Psyllid ID: psy15269
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1858 | 2.2.26 [Sep-21-2011] | |||||||
| Q15751 | 4861 | Probable E3 ubiquitin-pro | yes | N/A | 0.475 | 0.181 | 0.377 | 1e-157 | |
| Q9VR91 | 4912 | Probable E3 ubiquitin-pro | yes | N/A | 0.190 | 0.072 | 0.374 | 4e-54 | |
| Q4U2R1 | 4836 | E3 ubiquitin-protein liga | no | N/A | 0.171 | 0.065 | 0.380 | 9e-50 | |
| O95714 | 4834 | E3 ubiquitin-protein liga | no | N/A | 0.171 | 0.065 | 0.377 | 3e-49 | |
| Q9FN03 | 440 | Ultraviolet-B receptor UV | no | N/A | 0.142 | 0.6 | 0.364 | 2e-33 | |
| Q6PAV2 | 1057 | Probable E3 ubiquitin-pro | no | N/A | 0.161 | 0.283 | 0.305 | 4e-27 | |
| Q5PQN1 | 1057 | Probable E3 ubiquitin-pro | no | N/A | 0.144 | 0.253 | 0.315 | 8e-27 | |
| Q15034 | 1050 | Probable E3 ubiquitin-pro | no | N/A | 0.139 | 0.247 | 0.318 | 1e-26 | |
| Q5GLZ8 | 1057 | Probable E3 ubiquitin-pro | no | N/A | 0.144 | 0.253 | 0.312 | 2e-26 | |
| Q9UII4 | 1024 | E3 ISG15--protein ligase | no | N/A | 0.109 | 0.198 | 0.364 | 3e-25 |
| >sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 | Back alignment and function desciption |
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Score = 558 bits (1437), Expect = e-157, Method: Compositional matrix adjust.
Identities = 381/1010 (37%), Positives = 548/1010 (54%), Gaps = 127/1010 (12%)
Query: 37 TLGNQVLTTSLSIVRNLPPLSLSNETQLSSLGIESLTQVSTFLRQTVTSTSPKADKTVQS 96
+L N V+ T++ +V +LPPLSL+NE+++ +G++ L+QV+TFL+ VT + AD T+
Sbjct: 187 SLCNDVIHTAIEVVSSLPPLSLANESKIPPMGLDCLSQVTTFLK-GVTIPNSGAD-TLGR 244
Query: 97 SLRSRVPLTKSLPPYNAALNLLEEVLRPAT---------------HYQVDLIRSACLVYL 141
L S + L L +L L E + A Q +I C + +
Sbjct: 245 RLASELLL--GLAAQRGSLRYLLEWIEMALGASAVVHTMEKGKLLSSQEGMISFDCFMTI 302
Query: 142 ILV-----------------TLADDNIKPLGD------RKSSNSNTDIDSTSTPKLTYNI 178
++ T D + L + + +D T +
Sbjct: 303 LMQMRRSLGSSADRSQWREPTRTSDGLCSLYEAALCLFEEVCRMASDYSRTCASPDSIQT 362
Query: 179 GDTDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTG 238
GD I +VY WG N HQ+++ + K +P+L S+ + IEAGQ+CTF++ + G
Sbjct: 363 GDAPIVSETCEVYVWGSNSSHQLVEGTQEKILQPKLAPSFSDAQTIEAGQYCTFVISTDG 422
Query: 239 GLLVYGKG---WLGLANTTIQPLPKRVPLEA--AIVSLSVSKCSEAHVLTVTSEGEVYSW 293
+ GKG LGL ++ Q K++ E +I +S SK S+ H L T+EGEV+SW
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFSW 482
Query: 294 GVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGR 353
G G++GKLGHGN+ +Q+ PKLI G L GK V VSAG+ HSAAVTEDG LYTWGEGD GR
Sbjct: 483 GDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGR 542
Query: 354 LGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKV 413
LGHGD SR+ PTLV ++S+VG VSCG SHT+ LS+DG TVWS G G+ GKLGH DT +V
Sbjct: 543 LGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRV 602
Query: 414 TTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG----LGLRSSSISFHTPVLVTGL 469
PKVIEAL+ +RKVCAG+ S+ALT G V+ WG LG SS + P L+ L
Sbjct: 603 YKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLGCGSSEATALRPKLIEEL 662
Query: 470 SSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQ 529
++ +IVDVSIGDSH LALS NEVYAWG+N+MGQCGQ N + P+ +P KV GL+ + ++Q
Sbjct: 663 AATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGNSTGPITKPKKVSGLDGIAIQQ 722
Query: 530 ICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTFTLIREFLEQYSACFETGDYI---P 586
I AG+ S+A+T P + + + P CVD+ TF+ +R FLE+Y C + I P
Sbjct: 723 ISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLRSFLERY--CDKINSEIPPLP 780
Query: 587 FCSKVTHAQFILLLLRLLSSHLYLALIGARSSSVLGNETAALRHVLFKLVDMETSPEIET 646
F S H F+ L L+LLS+HL LAL G ++S+LG + LR++LF+L+D EI+
Sbjct: 781 FPSSREHHSFLKLCLKLLSNHLALALAGGVATSILGRQAGPLRNLLFRLMDSTVPDEIQE 840
Query: 647 LLTDCLAIGASLLLPPVVEQLDLLKTLLSQD----HPLSNGQRMLLGVITSSLHKNEELA 702
++ + L++GA++LLPP+ E+++LL +LL Q LS GQRM L +I +SL + +A
Sbjct: 841 VVIETLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSKGQRMQLDIILTSLQDHTHVA 900
Query: 703 HIFYFDQNQDTNIL-------------------------MLEDLLKISCRKSYAYTLTHF 737
+ + D L + E L+K R YT F
Sbjct: 901 SLLGYSSPSDAADLSSVCTGYGNLSDQPYGTQSCHPDTHLAEILMKTLLRNLGFYTDQAF 960
Query: 738 ---QSNACKV------SPQETPV---SQVVTLLQSLIITQYVVKHSEICEEV--YQHYLD 783
+ N+ K S P + +L + L+ ++ SE V +L
Sbjct: 961 GELEKNSDKFLLGTSSSENSQPAHLHELLCSLQKQLLAFCHINNISENSSSVALLHKHLQ 1020
Query: 784 IVFPHVIDILERSIAWVNQ----GKDIEVLNELLYNSLAGKILFSIVHSLL---INIHRS 836
++ PH DI RS + + G E L +++Y S AG +L IV+SLL +++ R
Sbjct: 1021 LLLPHATDIYSRSANLLKESPWNGSVGEKLRDVIYVSAAGSMLCQIVNSLLLLPVSVARP 1080
Query: 837 MYPTLRYFLA-------ILPLLDSL-NQLL--PMQGN-----------YTETNSFLWLID 875
+ L L +LP D L +Q L P+ G S++WL+D
Sbjct: 1081 LLSYLLDLLPPLDCLNRLLPAADLLEDQELQWPLHGGPELIDPAGLPLPQPAQSWVWLVD 1140
Query: 876 MERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIID 925
+ER +ALLIG+ LG ML G P + EE +T +W+KT L S G+E T +D
Sbjct: 1141 LERTIALLIGRCLGGMLQGSPVSPEEQDTAYWMKTPLFSDGVEMDTPQLD 1190
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Involved in membrane trafficking via some guanine nucleotide exchange factor (GEF) activity and its ability to bind clathrin. Acts as a GEF for Arf and Rab, by exchanging bound GDP for free GTP. Binds phosphatidylinositol 4,5-bisphosphate, which is required for GEF activity. May also act as a E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Homo sapiens (taxid: 9606) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 214 bits (546), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 140/374 (37%), Positives = 198/374 (52%), Gaps = 20/374 (5%)
Query: 190 VYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIR--HIEAGQFCTFLLDSTGGLLVYGKG- 246
V WG N Q+ K P S +R HI G F++ G + G+G
Sbjct: 2988 VMVWGLNDKEQLGGLKGSKVKVPTFSQTISRLRPIHIAGGSKSLFIVSQDGKVYACGEGT 3047
Query: 247 --WLGLANTTIQPLPKRVP-LEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGH 303
LGL T PLP ++P L +V H L +T +G+V+SWG GE GKLGH
Sbjct: 3048 NGRLGLGVTHNVPLPHQLPVLRQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLGH 3107
Query: 304 GNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRH 363
GN + +P+L+ L K++ V+ G SHSAA++ G LYTWG G++GRLGHGD ++
Sbjct: 3108 GNRTTLDKPRLVEA-LRAKKIRDVACGSSHSAAISSQGELYTWGLGEYGRLGHGDNTTQL 3166
Query: 364 TPTLVTELSD--VGAVSCG--ESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVI 419
P LVT L+ V V+CG ++ TL L++DG V+S G G+ GKLG + TP I
Sbjct: 3167 KPKLVTALAGRRVVQVACGSRDAQTLALTEDG-AVFSWGDGDFGKLGRGGSEGSDTPHEI 3225
Query: 420 EALRKFRVRKVCAGTSFSVALTWDGLVFWWGLG-----LRSSSISFHTPVLVTGLSSHQI 474
E L V ++ G FS+ALT G V+ WG G P + GL ++
Sbjct: 3226 ERLSGIGVVQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRKPQPIGGLRGRRV 3285
Query: 475 VDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDN-FSNPVDQPSKVVGLEDVCVRQICAG 533
+ V++G H LA++ +VYAWG N GQ G N F N +P+ V+GL+ V V ++ G
Sbjct: 3286 IHVAVGALHCLAVTDAGQVYAWGDNDHGQQGSGNTFVN--KKPALVIGLDAVFVNRVACG 3343
Query: 534 SLFSIAYTVPPSNS 547
S SIA+ +P ++S
Sbjct: 3344 SSHSIAWGLPNASS 3357
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Probable E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Drosophila melanogaster (taxid: 7227) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 200 bits (509), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 129/339 (38%), Positives = 183/339 (53%), Gaps = 21/339 (6%)
Query: 280 HVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIM---GGLYGKRVTQVSAGHSHSAA 336
H L + + GEVYSWG G+ G+LGHG+T+ PK+I G GK V ++ G ++SAA
Sbjct: 507 HYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAA 566
Query: 337 VTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGA--VSCG--ESHTLVLSQDGH 392
+T +G LYTWG G++GRLGHG + P LV L + V+CG ++ TL ++++G
Sbjct: 567 ITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQ 626
Query: 393 TVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLG 452
VWS G G+ GKLG + TPK+IE L+ V KV G+ FS+ALT DG V+ WG G
Sbjct: 627 -VWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRCGSQFSIALTKDGQVYSWGKG 685
Query: 453 -----LRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQ- 506
+ P L+ GL +++DV+ G +H LAL++ +EV++WGSN QC
Sbjct: 686 DNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSND--QCQHF 743
Query: 507 DNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAF-TPLCVDVRPHTF 565
D +P+ + GL+ + I G S A++ S S S P VD+ TF
Sbjct: 744 DTLRVTKPEPTALPGLDSKHIVGIACGPAQSFAWS---SCSEWSIGLRVPFVVDICSMTF 800
Query: 566 TLIREFLEQYSACFE-TGDYIPFCSKVTHAQFILLLLRL 603
+ L Q S + T D+ P K A L LLRL
Sbjct: 801 EQLDLLLRQVSEGMDGTADWPPPQEKECMAVATLNLLRL 839
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E3 ubiquitin-protein ligase that regulates ubiquitin-dependent retention of repair proteins on damaged chromosomes. Recruited to sites of DNA damage in response to ionizing radiation (IR) and facilitates the assembly of UBE2N and RNF8 promoting DNA damage-induced formation of 'Lys-63'-linked ubiquitin chains. Acts as a mediator of binding specificity between UBE2N and RNF8. Involved in the maintenance of RNF168 levels. E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of XPA which influences the circadian oscillation of DNA excision repair activity. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 198 bits (504), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 128/339 (37%), Positives = 183/339 (53%), Gaps = 21/339 (6%)
Query: 280 HVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIM---GGLYGKRVTQVSAGHSHSAA 336
H L + + GEVYSWG G+ G+LGHG+T+ PK+I G GK V ++ G ++SAA
Sbjct: 506 HYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAA 565
Query: 337 VTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGA--VSCG--ESHTLVLSQDGH 392
+T +G LYTWG G++GRLGHG + P LV L + V+CG ++ TL ++++G
Sbjct: 566 ITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQ 625
Query: 393 TVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLG 452
VWS G G+ GKLG + TPK+IE L+ V KV G+ FS+ALT DG V+ WG G
Sbjct: 626 -VWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQVYSWGKG 684
Query: 453 -----LRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQ- 506
+ P L+ GL +++DV+ G +H LAL++ +EV++WGSN QC
Sbjct: 685 DNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSND--QCQHF 742
Query: 507 DNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAF-TPLCVDVRPHTF 565
D +P+ + GL+ + I G S A++ S S S P VD+ TF
Sbjct: 743 DTLRVTKPEPAALPGLDTKHIVGIACGPAQSFAWS---SCSEWSIGLRVPFVVDICSMTF 799
Query: 566 TLIREFLEQYSACFE-TGDYIPFCSKVTHAQFILLLLRL 603
+ L Q S + + D+ P K A L LLRL
Sbjct: 800 EQLDLLLRQVSEGMDGSADWPPPQEKECVAVATLNLLRL 838
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E3 ubiquitin-protein ligase that regulates ubiquitin-dependent retention of repair proteins on damaged chromosomes. Recruited to sites of DNA damage in response to ionizing radiation (IR) and facilitates the assembly of UBE2N and RNF8 promoting DNA damage-induced formation of 'Lys-63'-linked ubiquitin chains. Acts as a mediator of binding specificity between UBE2N and RNF8. Involved in the maintenance of RNF168 levels. E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of XPA which influences the circadian oscillation of DNA excision repair activity. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 149/285 (52%), Gaps = 21/285 (7%)
Query: 236 STGGLLVYGKGW-----LGLANTT--IQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEG 288
S G+ VY GW LG N++ PLP + I ++ C ++H L VT EG
Sbjct: 83 SQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA---CGDSHCLAVTMEG 139
Query: 289 EVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGE 348
EV SWG ++G+LG G+T P+ I G R+ V+AG H+AAVTEDG LY WG
Sbjct: 140 EVQSWGRNQNGQLGLGDTEDSLVPQKIQA-FEGIRIKMVAAGAEHTAAVTEDGDLYGWGW 198
Query: 349 GDHGRLGHGDLKSRHTPTLVTELSD--VGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLG 406
G +G LG GD R P VT + V+CG HT+ +S G +++ G G+LG
Sbjct: 199 GRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSG-ALYTYGWSKYGQLG 257
Query: 407 HEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISF 460
H D P +EAL + ++ G ++ALT DG ++ WG +G+ +++
Sbjct: 258 HGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV-GNNLDQ 316
Query: 461 HTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCG 505
+PV V ++V VS G H LA+++ N V+AWG T GQ G
Sbjct: 317 CSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 361
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UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 155/318 (48%), Gaps = 18/318 (5%)
Query: 243 YGKGWLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLG 302
YG+ LG + I P+R V C H + V +G VY+ G + G+LG
Sbjct: 9 YGQLGLGGIDEEIVLEPRRSDFFVNKKVRDVG-CGLRHTVFVLDDGTVYTCGCNDLGQLG 67
Query: 303 HGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLG-HGDLKS 361
H S+++P+ ++ L + + V+ G +H+ A+ + G +Y WG G+LG G +
Sbjct: 68 HEK--SRKKPEQVV-ALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQLGLQGSEEC 124
Query: 362 RHTPTLVTELSDVG--AVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHE-DTGKVTTPKV 418
P + LSD+ V+CG H+L LS+ V+ G G+LG D K T+P++
Sbjct: 125 IRVPRNIKSLSDIQIVQVACGYYHSLALSK-ASEVFCWGQNKYGQLGLGIDCQKQTSPQL 183
Query: 419 IEALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSSH 472
I++L +V AG + S LT G +F WG LGL + + P L+ L S
Sbjct: 184 IKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRY-VPNLLKSLRSQ 242
Query: 473 QIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICA 532
+IV + G+ H AL++ V+ +G+ GQ G ++ S+ ++ P KV L V Q+
Sbjct: 243 KIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRKVFELMGSIVTQVAC 301
Query: 533 GSLFSIAYTVPPSNSALS 550
G + A+ VP S S
Sbjct: 302 GRQHTSAF-VPSSGRIYS 318
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Probable E3 ubiquitin-protein ligase involved in either protein trafficking or in the distribution of cellular structures. Required for spermatozoon maturation and fertility, and for the removal of the cytoplasmic droplet of the spermatozoon. E3 ubiquitin-protein ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer it to targeted substrates. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 144/285 (50%), Gaps = 17/285 (5%)
Query: 276 CSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSA 335
C H + V +G VY+ G + G+LGH S+++P+ ++ L + + VS G +H+
Sbjct: 41 CGLRHTVFVLDDGTVYTCGCNDLGQLGHEK--SRKKPEQVV-ALDAQNIVAVSCGEAHTL 97
Query: 336 AVTEDGLLYTWGEGDHGRLG-HGDLKSRHTPTLVTELSDVG--AVSCGESHTLVLSQDGH 392
A+ + G +Y WG G+LG G + P + LSD+ V+CG H+L LS+
Sbjct: 98 ALNDKGQVYAWGLDSDGQLGLQGSEECIRVPRNIKSLSDIQIVQVACGYYHSLALSK-AS 156
Query: 393 TVWSMGSGNLGKLGHE-DTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG- 450
V+ G G+LG + K T+P++I++L +V AG + S LT G +F WG
Sbjct: 157 EVFCWGQNKYGQLGLGIECQKQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGR 216
Query: 451 -----LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCG 505
LGL + + P L+ L S +IV + G+ H AL++ V+ +G+ GQ G
Sbjct: 217 NKFGQLGLNDENDRY-VPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLG 275
Query: 506 QDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALS 550
++ S+ ++ P KV L V QI G + A+ VP S S
Sbjct: 276 HNSTSHEIN-PRKVFELMGSIVTQIACGRQHTSAF-VPSSGRIYS 318
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Probable E3 ubiquitin-protein ligase involved in either protein trafficking or in the distribution of cellular structures. Required for spermatozoon maturation and fertility, and for the removal of the cytoplasmic droplet of the spermatozoon. E3 ubiquitin-protein ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer it to targeted substrates. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 147/283 (51%), Gaps = 23/283 (8%)
Query: 276 CSEAHVLTVTSEGEVYSWGVGEHGKLGH---GNTLSQRRPKLIMGGLYGKRVTQVSAGHS 332
C H + + +GEVY+ G+ G+LGH GN Q +G L + + V+ G S
Sbjct: 41 CGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQ------IGALADQHIIHVACGES 94
Query: 333 HSAAVTEDGLLYTWGEGDHGRLGHGDLK-SRHTPTLVTELSD--VGAVSCGESHTLVLSQ 389
HS A+++ G L++WG G G+LG + S P L+ +L+ + VSCG H L L+
Sbjct: 95 HSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAA 154
Query: 390 DGHTVWSMGSGNLGKLG-HEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFW 448
DG ++ G + G+LG ++ +P+ + +L + +V AG + S AL+ G VF
Sbjct: 155 DGQ-FFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFG 213
Query: 449 WG------LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMG 502
WG LGL S +P V L + ++V +S G+ H L++ V+ +G+ + G
Sbjct: 214 WGMNNAGQLGL-SDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCG 272
Query: 503 QCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPS 545
Q G D+ ++ V+ P +V+ L V QI G ++A+ VP S
Sbjct: 273 QLGHDSMNDEVN-PRRVLELMGSEVTQIACGRQHTLAF-VPSS 313
|
E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 144/285 (50%), Gaps = 17/285 (5%)
Query: 276 CSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSA 335
C H + V +G VY+ G + G+LGH S+++P+ ++ L + + VS G +H+
Sbjct: 41 CGLRHTVFVLDDGTVYTCGCNDLGQLGHEK--SRKKPEQVV-ALDAQNIVAVSCGEAHTL 97
Query: 336 AVTEDGLLYTWGEGDHGRLGH-GDLKSRHTPTLVTELSDVG--AVSCGESHTLVLSQDGH 392
A+ + G +Y WG G+LG G + P + LSD+ V+CG H+L LS+
Sbjct: 98 ALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLSDIQIVQVACGYYHSLALSK-AS 156
Query: 393 TVWSMGSGNLGKLG-HEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG- 450
V+ G G+LG D K T+P+++++L +V AG + S LT G +F WG
Sbjct: 157 EVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGR 216
Query: 451 -----LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCG 505
LGL + + P L+ L S +IV + G+ H AL++ V+ +G+ GQ G
Sbjct: 217 NKFGQLGLNDENDRY-VPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLG 275
Query: 506 QDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALS 550
++ S+ ++ P KV L V +I G + A+ VP S S
Sbjct: 276 HNSTSHEIN-PRKVFELMGSIVTEIACGRQHTSAF-VPSSGRIYS 318
|
Probable E3 ubiquitin-protein ligase involved in either protein trafficking or in the distribution of cellular structures. Required for spermatozoon maturation and fertility, and for the removal of the cytoplasmic droplet of the spermatozoon. E3 ubiquitin-protein ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer it to targeted substrates. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9UII4|HERC5_HUMAN E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 109/211 (51%), Gaps = 8/211 (3%)
Query: 213 RLQSL--PSNIRHIEAGQFCTFLLDSTGGLLVYGK---GWLGLANTTIQPLPKRVPLEAA 267
R +S+ I I G + + L G L +G+ G LG+ ++ A
Sbjct: 130 RFESILQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTTPQIVEHLA 189
Query: 268 IVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQV 327
V L+ EAH + ++ G +YSWG E G+LG G+T S+ P LI GL ++V V
Sbjct: 190 GVPLAQISAGEAHSMALSMSGNIYSWGKNECGQLGLGHTESKDDPSLI-EGLDNQKVEFV 248
Query: 328 SAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTEL--SDVGAVSCGESHTL 385
+ G SHSA +T+DGLL+T+G G HG+LGH ++ P LV EL V ++CG HTL
Sbjct: 249 ACGGSHSALLTQDGLLFTFGAGKHGQLGHNSTQNELRPCLVAELVGYRVTQIACGRWHTL 308
Query: 386 VLSQDGHTVWSMGSGNLGKLGHEDTGKVTTP 416
D V+S GSG G+LG+ T P
Sbjct: 309 AYVSDLGKVFSFGSGKDGQLGNGGTRDQLMP 339
|
Major E3 ligase for ISG15 conjugation. Acts as a positive regulator of innate antiviral response in cells induced by interferon. Makes part of the ISGylation machinery that recognizes target proteins in a broad and relatively non-specific manner. Catalyzes ISGylation of IRF3 which results in sustained activation, it attenuates IRF3-PIN1 interaction, which antagonizes IRF3 ubiquitination and degradation, and boosts the antiviral response. Catalyzes ISGylation of influenza A viral NS1 which attenuates virulence; ISGylated NS1 fails to form homodimers and thus to interact with its RNA targets. Catalyzes ISGylation of papillomavirus type 16 L1 protein which results in dominant-negative effect on virus infectivity. Physically associated with polyribosomes, broadly modifies newly synthesized proteins in a cotranslational manner. In an interferon-stimulated cell, newly translated viral proteins are primary targets of ISG15. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1858 | ||||||
| 270002031 | 4191 | hypothetical protein TcasGA2_TC000971 [T | 0.482 | 0.214 | 0.371 | 1e-159 | |
| 348542108 | 4936 | PREDICTED: probable E3 ubiquitin-protein | 0.475 | 0.179 | 0.371 | 1e-157 | |
| 354474338 | 4859 | PREDICTED: probable E3 ubiquitin-protein | 0.475 | 0.181 | 0.379 | 1e-156 | |
| 440907021 | 4874 | Putative E3 ubiquitin-protein ligase HER | 0.475 | 0.181 | 0.370 | 1e-156 | |
| 125821491 | 4846 | PREDICTED: probable E3 ubiquitin-protein | 0.475 | 0.182 | 0.377 | 1e-156 | |
| 426233168 | 4856 | PREDICTED: probable E3 ubiquitin-protein | 0.475 | 0.182 | 0.370 | 1e-156 | |
| 224061683 | 4864 | PREDICTED: probable E3 ubiquitin-protein | 0.480 | 0.183 | 0.373 | 1e-156 | |
| 395822793 | 4828 | PREDICTED: probable E3 ubiquitin-protein | 0.474 | 0.182 | 0.373 | 1e-156 | |
| 410961060 | 4861 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.475 | 0.181 | 0.369 | 1e-155 | |
| 281347310 | 4871 | hypothetical protein PANDA_002155 [Ailur | 0.475 | 0.181 | 0.368 | 1e-155 |
| >gi|270002031|gb|EEZ98478.1| hypothetical protein TcasGA2_TC000971 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 375/1009 (37%), Positives = 566/1009 (56%), Gaps = 112/1009 (11%)
Query: 37 TLGNQVLTTSLSIVRNLPPLSLSNETQLSSLGIESLTQVSTFLRQTVTSTSPKADK---- 92
+L N VL TS +++ LPPL LSN+TQL++LGI SL QVS FL+ V + SP AD
Sbjct: 180 SLCNSVLETSFDLLQKLPPLCLSNDTQLTNLGITSLEQVSDFLKDAVLN-SPNADSHAKL 238
Query: 93 -------------------------TVQSSLRSRVPLTKSLPPYNAALNLLE-------- 119
+ +S ++ L S + +A+ LE
Sbjct: 239 LSCKLLLALALQRGSLRYLLDWIEMVLDASCKTEGILCDSF--FKSAIMQLESGKYKIKS 296
Query: 120 EVLRPATHYQVDLIRSACLVYLILVTLADDNIKPLGDRKSSNSNTDIDSTSTPKLTYNIG 179
++ + T +V + +A + IL +A D G S+ +++TS
Sbjct: 297 DLWKGQTSSEVSVYEAAINLMEILAGMAID----FGGVCSA-----VETTS--------- 338
Query: 180 DTDISV-AHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTG 238
++++ V S VY WG N HQ+ + + K P + + ++ +EAGQ+CTF + G
Sbjct: 339 ESEVGVYEKSDVYVWGSNSSHQLAEGNQEKILMPVKSKMFTQVQQVEAGQYCTFAIHWDG 398
Query: 239 GLLVYGKG---WLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGV 295
+ GKG LGL ++ Q LPKR+ L+ + LS SK S+ H L + G VYSWG
Sbjct: 399 SVSACGKGSYGRLGLGESSNQSLPKRILLDCVVKKLSSSKGSDGHTLALAETGVVYSWGD 458
Query: 296 GEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLG 355
G++GKLGHGN + ++P+ I G GK + + AG+ HSAAVT+DG LYTWGEGDHGRLG
Sbjct: 459 GDYGKLGHGNCATHKQPERITGPFLGKTIKYIHAGYRHSAAVTDDGKLYTWGEGDHGRLG 518
Query: 356 HGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTT 415
HGD +R+ PT V L++VG+V+CG SHTLV+S+DG TVWS GSG GKLG + GKV
Sbjct: 519 HGDSNARYVPTQVAGLAEVGSVACGSSHTLVVSKDGKTVWSFGSGEHGKLGTGELGKVYR 578
Query: 416 PKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG----LGLRSSSISFHTPVLVTGLSS 471
P+V+EAL+ ++KVCAGT FS+ALT G V+ WG LG S+ + P+ V L+
Sbjct: 579 PQVVEALQGLTIQKVCAGTWFSMALTTAGEVYTWGSGAILGKGSADAIVNLPMYVEDLAQ 638
Query: 472 HQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQIC 531
++IVD+S GD+H LAL+ +EV+AWG+N+MGQCGQ + +P+ +P KV+GLE V +RQI
Sbjct: 639 YRIVDISAGDNHCLALTDEHEVFAWGTNSMGQCGQGHTCSPITRPLKVIGLEGVSIRQIS 698
Query: 532 AGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTFTLIREFLEQYSACF--ETGDYIPFCS 589
AG+ S+A+T + + + P C+D+ TF L+++FLE+Y+ F ET PF +
Sbjct: 699 AGTSHSMAWTSMSTENHHMTKHKPFCLDLHEKTFILLKKFLEKYTVSFIYETPP-PPFKT 757
Query: 590 KVTHAQFILLLLRLLSSHLYLALIGARSSSVLGNETAALRHVLFKLVDMETSPEIETLLT 649
H +F+LL L+LL +HL L + G S ++L N T LR +LF+LVD++T PEI + +
Sbjct: 758 ATEHHRFVLLTLKLLCTHLSLCINGNLSDNILSNHTKQLRLILFRLVDIKTPPEIYSTVI 817
Query: 650 DCLAIGASLLLPPVVEQLDLLKTLLSQDHPLSNGQRMLLGVITSSLHKNEELAHIFYFDQ 709
+ + +GASLLLP + E+++ + LS+D L+ GQ+MLL ++ SL +A + +
Sbjct: 818 ELINVGASLLLPQLQERVEFVHEHLSKDG-LTQGQQMLLNIVLCSLEDPAHIAALLRIQE 876
Query: 710 NQDTNILM----------LEDLLKISCRKSYAYTLTHFQSNACKVSPQETPVSQVVTLLQ 759
Q T LM ED L S +K T NA S +T + ++++ LQ
Sbjct: 877 QQLTETLMSTLLQSFSKLTEDTLD-SVKKYMETQPTDEWKNA--ASTTQTHLQKLLSSLQ 933
Query: 760 SLIITQYVVKHSEICEEVYQHYLDIVFPHVIDILERSIAWVNQ-GKDIEVLNELLYNSLA 818
+ ++ V+K+++I ++ H L+ +FP +I +LE+S + Q +E+L +L +S++
Sbjct: 934 NHLLAHVVIKNNQIFHILHNH-LNQLFPLIIRVLEKSACILEQYPPSLELLYNVLLDSVS 992
Query: 819 GKILFSIVHSLLINIHRSMYPTLRYFLAILPLLDSLNQLLPMQ--------GNYTET--- 867
G + ++ SLL+ + L L +L LD N+LLP++ + +ET
Sbjct: 993 GSMFLKLLSSLLLIPPVFIKELLPELLNVLVSLDRFNKLLPVEITNDVSTVSSRSETPTL 1052
Query: 868 -----NSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTA 922
S+LW+ID++R +LLIG+ LG G P EE +WL T L SAG+
Sbjct: 1053 AQLADQSWLWIIDLQRTCSLLIGECLGGAFAGDPPTIEEISCWNWLNTDLFSAGIVND-- 1110
Query: 923 IIDID-KFVRDMRHVS-----NNILMS-PNYESDVNKYSVLLKYIPQQY 964
DID + V DM H + + +L+S N V Y L +PQQY
Sbjct: 1111 --DIDVQTVVDMSHTALLNLQDALLISLENMSPTVQNYCKLAFKLPQQY 1157
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|348542108|ref|XP_003458528.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Oreochromis niloticus] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 374/1008 (37%), Positives = 550/1008 (54%), Gaps = 124/1008 (12%)
Query: 38 LGNQVLTTSLSIVRNLPPLSLSNETQLSSLGIESLTQVSTFLRQTVTSTSPKAD------ 91
L N V+ T++ +V +LP LSL+NE+++ +G++ L+QV+TFL+ VT + AD
Sbjct: 195 LCNDVIHTAIDVVSSLPALSLANESKIPPMGLDCLSQVTTFLK-GVTMPNSGADILGRRL 253
Query: 92 --------KTVQSSLRSRVPLTKSLPPYNAALNLLEEVLRPATHYQVDLIRSACLVYLIL 143
+ + SLR + + +A ++ +E+ Q LI C + +++
Sbjct: 254 ASELLLGLASQRGSLRYLLEWIEMALAASAVVSTMEQ--NKLLQNQEGLISYDCFMNILM 311
Query: 144 V-----------------TLADDNIKPLGD------RKSSNSNTDIDSTSTPKLTYNIGD 180
T D + L + + +D T + G+
Sbjct: 312 QMRRSLGSSADRSQWREPTRTSDGLCSLYEAALCLFEEVCRMASDYSRTCVSPDSIQTGE 371
Query: 181 TDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGL 240
T + +VY WG N HQ+++ + K +P+L S ++ + IEAGQ+CTF++ S G +
Sbjct: 372 TPVVSETCEVYVWGSNSSHQLVEGTQEKILQPKLASSFADAQTIEAGQYCTFVISSDGSV 431
Query: 241 LVYGKG---WLGLANTTIQPLPKRVPLEA--AIVSLSVSKCSEAHVLTVTSEGEVYSWGV 295
GKG LGL ++ Q K++ E AI +S SK S+ H L T+EGEV+SWG
Sbjct: 432 RACGKGSYGRLGLGDSNNQSTLKKLTFEPHRAIKKVSSSKGSDGHTLAFTTEGEVFSWGD 491
Query: 296 GEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLG 355
G++GKLGHGN+ +Q+ PKLI G L GK V VSAG+ HSAAV+EDG LYTWGEGD GRLG
Sbjct: 492 GDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVSEDGELYTWGEGDFGRLG 551
Query: 356 HGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTT 415
HGD SR+ PTLV ++S+VG VSCG SHT+ LS+DG TVWS G G+ GKLGH DT +V
Sbjct: 552 HGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRVYK 611
Query: 416 PKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG----LGLRSSSISFHTPVLVTGLSS 471
PKV+EAL+ +RKVCAG+ S+ALT G V+ WG LG SS + P L+ L++
Sbjct: 612 PKVVEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLGCGSSEATALRPKLIEELAT 671
Query: 472 HQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQIC 531
++VD+SIGDSH LALS NEVYAWG+N+MGQCGQ N + P+ +P KV+GL+ V ++QI
Sbjct: 672 TRVVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGNSTGPITKPKKVIGLDGVAIQQIS 731
Query: 532 AGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTFTLIREFLEQYSACFETG-DYIPFCSK 590
AG+ S+A+T P + + + P CVD+ TF+ +R FLE+Y + +PF S
Sbjct: 732 AGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLRSFLERYCDGINSEVPPLPFPSS 791
Query: 591 VTHAQFILLLLRLLSSHLYLALIGARSSSVLGNETAALRHVLFKLVDMETSPEIETLLTD 650
H F+ L LRLLS+HL LAL G ++S+LG + LR++LF+L+D EI+ + +
Sbjct: 792 REHHNFLKLCLRLLSNHLALALAGGVATSILGRQARPLRNLLFRLMDSSVPDEIQEAVIE 851
Query: 651 CLAIGASLLLPPVVEQLDLLKTLLSQD----HPLSNGQRMLLGVITSSLHKNEELAHIFY 706
L++GA++LLPP+ E+++LL +LL Q LS GQRM L +I +SL + +A +
Sbjct: 852 TLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSKGQRMQLDIILTSLQDHTHVASLLG 911
Query: 707 FDQNQD-------------------------TNILMLEDLLKISCRKSYAYTLTHF---- 737
+ D + + E L+K R YT F
Sbjct: 912 YSSPADGPEVLSSGPAFTALPEPAYGTTTGHPDTHLAEILMKTLLRNLGFYTDQAFGELE 971
Query: 738 -------QSNACKVSPQETPVSQVVTLLQS-LIITQYVVKHSEICEEV--YQHYLDIVFP 787
Q + S Q + Q++ LQ L+ ++ +E V +L ++ P
Sbjct: 972 KNSDKLQQGTSSSDSSQPAHLHQLLCSLQKQLLAYCHINSVTENSSSVSLLHKHLQLLLP 1031
Query: 788 HVIDILERSIAWVNQ----GKDIEVLNELLYNSLAGKILFSIVHSLL---INIHRSMYPT 840
H DI RS A + + G E L +++Y S AG +L I+++LL +++ R +
Sbjct: 1032 HATDIYSRSAALIKESSWNGSIREKLQDVIYVSAAGSMLCQIINALLLLPVSVARPLLSQ 1091
Query: 841 L-----------RYFLAILPLLDSLNQLLPMQG--NYTETN----------SFLWLIDME 877
L R A PL D Q P+QG ++ E S++WL+D+E
Sbjct: 1092 LLELLPPLDCLNRLLPAASPLEDQELQ-WPLQGTSDFAEPASGMTLPQPALSWVWLVDLE 1150
Query: 878 RALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIID 925
R +ALL+G+ LG ML G P + EE +TV+WLKT L S GLE +D
Sbjct: 1151 RTVALLVGRCLGGMLQGAPTSLEEQDTVYWLKTPLFSNGLEMDIPQLD 1198
|
Source: Oreochromis niloticus Species: Oreochromis niloticus Genus: Oreochromis Family: Cichlidae Order: Perciformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|354474338|ref|XP_003499388.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Cricetulus griseus] | Back alignment and taxonomy information |
|---|
Score = 561 bits (1445), Expect = e-156, Method: Compositional matrix adjust.
Identities = 383/1010 (37%), Positives = 548/1010 (54%), Gaps = 127/1010 (12%)
Query: 37 TLGNQVLTTSLSIVRNLPPLSLSNETQLSSLGIESLTQVSTFLRQTVTSTSPKADKTVQS 96
+L N V+ T++ +V +LPPLSL+NE+++ +G++ L+QV+TFL+ VT + AD T+
Sbjct: 187 SLCNDVIHTAIEVVSSLPPLSLANESKIPPMGLDCLSQVTTFLK-GVTIPNSGAD-TLGR 244
Query: 97 SLRSRVPLTKSLPPYNAALNLLEEVLRPAT---------------HYQVDLIRSACLVYL 141
L S + L L +L L E + A Q +I C + +
Sbjct: 245 RLASELLL--GLAAQRGSLRYLLEWIEMALGASAVVHTMEKNKLLSSQEGMISFDCFMAI 302
Query: 142 I------LVTLADDNIKPLGDRKSSN-----------------SNTDIDSTSTPKLTYNI 178
+ L + AD + R S +D T +
Sbjct: 303 LMQMRRSLGSSADRSQWREPTRTSEGLCSLYEAALCLFEEVCRMASDYSRTCASPDSIQT 362
Query: 179 GDTDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTG 238
GD I +VY WG N HQ+++ + K +P+L S+ + IEAGQ+CTF++ + G
Sbjct: 363 GDAPIVSETCEVYVWGSNSSHQLVEGTQEKILQPKLAPSFSDAQTIEAGQYCTFVISTDG 422
Query: 239 GLLVYGKG---WLGLANTTIQPLPKRVPLEA--AIVSLSVSKCSEAHVLTVTSEGEVYSW 293
+ GKG LGL ++ Q K++ E +I +S SK S+ H L T+EGEV+SW
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFSW 482
Query: 294 GVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGR 353
G G++GKLGHGN+ +Q+ PKLI G L GK V VSAG+ HSAAVTEDG LYTWGEGD GR
Sbjct: 483 GDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGR 542
Query: 354 LGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKV 413
LGHGD SR+ PTLV ++S+VG VSCG SHT+ LS+DG TVWS G G+ GKLGH DT +V
Sbjct: 543 LGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRV 602
Query: 414 TTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG----LGLRSSSISFHTPVLVTGL 469
PKVIEAL+ +RKVCAG+ S+ALT G V+ WG LG SS + P L+ L
Sbjct: 603 YKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLGCGSSEATALRPKLIEEL 662
Query: 470 SSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQ 529
++ +IVD+SIGDSH L+LS NEVYAWG+N+MGQCGQ N + P+ +P KV GL+ + ++Q
Sbjct: 663 AATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQGNSTGPITKPKKVSGLDGIAIQQ 722
Query: 530 ICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTFTLIREFLEQYSACFETGDYI---P 586
I AG+ S+A+T P + + + P CVD+ TF+ +R FLE+Y C + I P
Sbjct: 723 ISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLRSFLERY--CDKINSEIPPLP 780
Query: 587 FCSKVTHAQFILLLLRLLSSHLYLALIGARSSSVLGNETAALRHVLFKLVDMETSPEIET 646
F S H F+ L L+LLS+HL LAL G ++S+LG + LR++LF+L+D EI+
Sbjct: 781 FPSSREHHNFLKLCLKLLSNHLALALAGGVATSILGRQAGPLRNLLFRLMDSTVPDEIQE 840
Query: 647 LLTDCLAIGASLLLPPVVEQLDLLKTLLSQD----HPLSNGQRMLLGVITSSLHKNEELA 702
++ + L++GA++LLPP+ E+++LL +LL Q LS GQRM L +I +SL + +A
Sbjct: 841 VVIETLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSKGQRMQLDIILTSLQDHTHVA 900
Query: 703 HIFYFDQNQDTNIL-------------------------MLEDLLKISCRKSYAYTLTHF 737
+ + D L + E L+K R YT F
Sbjct: 901 SLLGYSSPSDAADLSTVCMGYGNLSDQPYGPQTCHPDTHLAEILMKTLLRNLGFYTDQAF 960
Query: 738 ---QSNACK----VSPQETPVSQ-----VVTLLQSLIITQYVVKHSEICEEV--YQHYLD 783
+ N+ K SP E + +L + L+ ++ +E V +L
Sbjct: 961 GELEKNSDKYLFGTSPSENSQPAHLHELLCSLQKQLLAFCHINNITENSSSVALLHKHLQ 1020
Query: 784 IVFPHVIDILERSIAWVNQ----GKDIEVLNELLYNSLAGKILFSIVHSLLINIHRSMYP 839
++ PH DI RS + + G E L +++Y S AG +L IV+SLL+ P
Sbjct: 1021 LLLPHATDIYSRSANLLKESPWNGSVGEKLRDVIYVSAAGSMLCQIVNSLLLLPVSVAPP 1080
Query: 840 TLRYFLAILPLLDSLNQLLPMQGNYTE------------------------TNSFLWLID 875
L Y L +LP LD LN+LLP + S++WL+D
Sbjct: 1081 FLSYLLDLLPPLDCLNRLLPAAALLEDQELQWPLHGGPEVIDPAGVPLPQPAQSWVWLVD 1140
Query: 876 MERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIID 925
+ER +ALLIG+ LG ML G P + EE +T +W+KT L S G+E T +D
Sbjct: 1141 LERTIALLIGRCLGGMLQGSPVSPEEQDTAYWMKTPLFSDGVEMDTPQLD 1190
|
Source: Cricetulus griseus Species: Cricetulus griseus Genus: Cricetulus Family: Cricetidae Order: Rodentia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|440907021|gb|ELR57214.1| Putative E3 ubiquitin-protein ligase HERC1, partial [Bos grunniens mutus] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 374/1009 (37%), Positives = 545/1009 (54%), Gaps = 125/1009 (12%)
Query: 37 TLGNQVLTTSLSIVRNLPPLSLSNETQLSSLGIESLTQVSTFLRQTVTSTSPKAD----- 91
+L N V+ T++ +V +LPPLSL+NE+++ +G++ L+QV+TFL+ VT + AD
Sbjct: 185 SLCNDVIHTAIEVVSSLPPLSLANESKIPPMGLDCLSQVTTFLK-GVTIPNSGADTLGRR 243
Query: 92 ---------KTVQSSLRSRVPLTKSLPPYNAALNLLEEVLRPATHYQVDLIRSACLVYLI 142
+ SLR + + +A +N +E+ ++ Q +I C + ++
Sbjct: 244 LASELLLGLAAQRGSLRYLLEWIEMALGASAVVNSMEKSKLLSS--QEGMISFDCFMTIL 301
Query: 143 LV-----------------TLADDNIKPLGD------RKSSNSNTDIDSTSTPKLTYNIG 179
+ T D + L + + +D T + G
Sbjct: 302 MQMRRSLGSSADRSQWREPTRTSDGLCSLYEAALCLFEEVCRMASDYSRTCASPDSIQTG 361
Query: 180 DTDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGG 239
DT I +VY WG N HQ+++ + K +P+L S+ + IEAGQ+CTF++ + G
Sbjct: 362 DTPIVSETCEVYVWGSNSSHQLVEGTQEKILQPKLAPSFSDAQTIEAGQYCTFVISTDGS 421
Query: 240 LLVYGKG---WLGLANTTIQPLPKRVPLEA--AIVSLSVSKCSEAHVLTVTSEGEVYSWG 294
+ GKG LGL ++ Q K++ E +I +S SK S+ H L T+EGEV+SWG
Sbjct: 422 VRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFSWG 481
Query: 295 VGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRL 354
G++GKLGHGN+ +Q+ PKLI G L GK V VSAG+ HSAAVTEDG LYTWGEGD GRL
Sbjct: 482 DGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGRL 541
Query: 355 GHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVT 414
GHGD SR+ PTLV ++S+VG VSCG SHT+ LS+DG TVWS G G+ GKLGH DT +V
Sbjct: 542 GHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRVY 601
Query: 415 TPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG----LGLRSSSISFHTPVLVTGLS 470
PKVIEAL+ +RKVCAG+ S+ALT G V+ WG LG SS + P L+ L+
Sbjct: 602 KPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLGCGSSEATALRPKLIEELA 661
Query: 471 SHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQI 530
+ +IVD+SIGDSH LALS NEVYAWG+N+MGQCGQ N + P+ +P KV GL+ + ++QI
Sbjct: 662 ATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGNSTGPITKPKKVSGLDGIAIQQI 721
Query: 531 CAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTFTLIREFLEQYSACFETGDYI---PF 587
AG+ S+A+T P + + + P CVD+ TF+ +R FLE+Y C + I PF
Sbjct: 722 SAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLRSFLERY--CDKINSEIPPLPF 779
Query: 588 CSKVTHAQFILLLLRLLSSHLYLALIGARSSSVLGNETAALRHVLFKLVDMETSPEIETL 647
S H F+ L L+LLS+HL LAL G ++S+LG + LR++LF+L+D EI+ +
Sbjct: 780 PSSREHHNFLKLCLKLLSNHLALALAGGVATSILGRQAGPLRNLLFRLMDSTVPDEIQEV 839
Query: 648 LTDCLAIGASLLLPPVVEQLDLLKTLLSQD----HPLSNGQRMLLGVITSSLHKNEELAH 703
+ + L++GA++LLPP+ E+++LL +LL Q LS GQRM L +I +SL + +A
Sbjct: 840 VIETLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSKGQRMQLDIILTSLQDHTHVAS 899
Query: 704 IFYFDQNQDTNIL-------------------------MLEDLLKISCRKSYAYTLTHF- 737
+ + D L + E L+K R YT F
Sbjct: 900 LLGYSSPSDAADLSSVCTGYGNLSDQPYGTQSCHPDTHLAEILMKTLLRNLGFYTDQAFG 959
Query: 738 --QSNACKV------SPQETPV---SQVVTLLQSLIITQYVVKHSEICEEV--YQHYLDI 784
+ N+ K S P + +L + L+ ++ SE V +L +
Sbjct: 960 ELEKNSDKFLLGTSSSENSQPAHLHELLCSLQKQLLAFCHINNISENSSSVALLHKHLQL 1019
Query: 785 VFPHVIDILERSIAWVNQ----GKDIEVLNELLYNSLAGKILFSIVHSLL---INIHR-- 835
+ PH DI RS + + G E L +++Y S AG +L IV+SLL +++ R
Sbjct: 1020 LLPHATDIYSRSANLLKESPWNGSVGEKLRDVIYVSAAGSMLCQIVNSLLLLPVSVARPL 1079
Query: 836 --------SMYPTLRYFLAILPLLDSLNQLLPMQGN-----------YTETNSFLWLIDM 876
L L LL+ P+ G S++WL+D+
Sbjct: 1080 LSYLLDLLPPLDCLNRLLPAAALLEDQELQWPLHGGPELIDPAGMPLPQPAQSWVWLVDL 1139
Query: 877 ERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIID 925
ER +ALLIG+ LG ML G P + EE +T +W+KT L S G+E T +D
Sbjct: 1140 ERTIALLIGRCLGGMLQGSPVSPEEQDTAYWMKTPLFSDGVEMDTPQLD 1188
|
Source: Bos grunniens mutus Species: Bos grunniens Genus: Bos Family: Bovidae Order: Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|125821491|ref|XP_698091.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Danio rerio] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 385/1019 (37%), Positives = 561/1019 (55%), Gaps = 135/1019 (13%)
Query: 38 LGNQVLTTSLSIVRNLPPLSLSNETQLSSLGIESLTQVSTFLRQTVTSTSPKAD------ 91
L N V+TT++ +V +LPPLSL+NE+++ +G++ L QV++FL+ VT + AD
Sbjct: 188 LCNDVITTAIEVVGSLPPLSLANESKIPPMGLDCLAQVTSFLK-GVTMRNSGADVVGRRL 246
Query: 92 -------------------KTVQSSLRSRVPLT------KSLPPYNAALNLLEEVLRP-- 124
+ V+ +L + ++ + L Y+ +N+L ++ R
Sbjct: 247 ACELLLGLAAQRGSLRYLLEWVEMALAASAGVSSLEQSQEGLMGYDCFMNILMQMRRSLG 306
Query: 125 --ATHYQ-VDLIRSA---CLVYLILVTLADDNIKPLGDRKSSNSNTDIDSTSTPKLTYNI 178
A Q + R+A C +Y + L ++ + D + ++ D +
Sbjct: 307 SSADRSQWREPTRTADGLCSLYEAALCLFEEVCRMASDYSRTCASPD---------SIQA 357
Query: 179 GDTDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTG 238
G+ + +VY WG N HQ+++ + K +P+L S+ + IEAGQ+CTF++ S G
Sbjct: 358 GEAAMVSETCEVYVWGSNSSHQLVEGTQEKILQPKLAPSFSDAQTIEAGQYCTFVISSDG 417
Query: 239 GLLVYGKG---WLGLANTTIQPLPKRVPLEA--AIVSLSVSKCSEAHVLTVTSEGEVYSW 293
+ GKG LGL ++ Q K++ E AI +S SK S+ H L TSEGEV+SW
Sbjct: 418 SVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRAIKKVSSSKGSDGHTLAFTSEGEVFSW 477
Query: 294 GVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGR 353
G G++GKLGHGN+ +Q+ PKLI G L GK V VSAG+ HSAAV+EDG LYTWGEGD GR
Sbjct: 478 GDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVSEDGELYTWGEGDFGR 537
Query: 354 LGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKV 413
LGHGD SR+ PTLV ++S+VG VSCG SHT+ LS+DG TVWS G G+ GKLGH DT +V
Sbjct: 538 LGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRV 597
Query: 414 TTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG----LGLRSSSISFHTPVLVTGL 469
PKV+EAL+ +RKVCAG+ S+ALT G V+ WG LG SS + P L+ L
Sbjct: 598 YKPKVVEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLGCGSSEATALRPKLIEEL 657
Query: 470 SSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQ 529
++ ++VD+SIGDSH LALS NEVYAWG+N+MGQCGQ N + P+ +P KV+GL+ V ++Q
Sbjct: 658 ATTRVVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGNSTGPITKPKKVIGLDGVAIQQ 717
Query: 530 ICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTFTLIREFLEQYSACFETGDYI---P 586
I AG+ S+A+T P + + + P CVD+ TF+ +R FLE+Y C + I P
Sbjct: 718 ISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLRSFLERY--CDGINNEIPPLP 775
Query: 587 FCSKVTHAQFILLLLRLLSSHLYLALIGARSSSVLGNETAALRHVLFKLVDMETSPEIET 646
F S H F+ L LRLLS+HL LAL G ++S+LG + LR++LF+L+D EI+
Sbjct: 776 FPSSKEHHNFLKLCLRLLSNHLALALAGGVATSILGRQARPLRNLLFRLMDASVPDEIQE 835
Query: 647 LLTDCLAIGASLLLPPVVEQLDLLKTLLSQD----HPLSNGQRMLLGVITSSLHKNEELA 702
+ + L++GA++LLPP+ E+++LL +LL Q LS GQRM L +I +SL + +A
Sbjct: 836 AVIETLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSKGQRMQLDIILTSLQDHTHVA 895
Query: 703 HIFYF------------------------DQNQDTNILMLEDLLKISCRKSYAYTLTHF- 737
+ + D + DT+ + E L+K R YT F
Sbjct: 896 SLLGYSCPPDASEPPAQPSDSTHVPGTHSDTHPDTH--LAEILMKTLLRNLGFYTDQAFG 953
Query: 738 --QSNACKV--------SPQETPVSQVVTLLQS-LIITQYVVKHSEICEEV--YQHYLDI 784
+ N+ K+ S Q + +++ LQ L+ ++ +E V +L +
Sbjct: 954 ELEKNSDKILQGTSSSDSSQPAHLHELLCSLQKQLLAYCHINSVTEGSSSVALLHKHLQL 1013
Query: 785 VFPHVIDILERSIAWVNQ----GKDIEVLNELLYNSLAGKILFSIVHSLLINIHRSMYPT 840
+ PH DI RS + + G E L +++Y S AG +L IV SLL+ P
Sbjct: 1014 LLPHATDIFNRSATLLRESSGNGSVREKLRDVIYMSAAGSMLCQIVTSLLLLPVWVARPL 1073
Query: 841 LRYFLAILPLLDSLNQLLPMQGNYTE----------------------TNSFLWLIDMER 878
L + L +LP LD LN+LLP E S++WL+D+ER
Sbjct: 1074 LSFLLDLLPPLDRLNKLLPAATPLEEQELQWPLHGSPDLVDPVCVSGPAQSWVWLVDLER 1133
Query: 879 ALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVS 937
ALL+G+ LG ML G + EE T HWLKT L S GLE T I +D + + V+
Sbjct: 1134 TAALLVGRCLGGMLQGAAPSAEEQHTTHWLKTPLFSNGLE--TEIPQLDACISSLLEVA 1190
|
Source: Danio rerio Species: Danio rerio Genus: Danio Family: Cyprinidae Order: Cypriniformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|426233168|ref|XP_004010589.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Ovis aries] | Back alignment and taxonomy information |
|---|
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 374/1009 (37%), Positives = 545/1009 (54%), Gaps = 125/1009 (12%)
Query: 37 TLGNQVLTTSLSIVRNLPPLSLSNETQLSSLGIESLTQVSTFLRQTVTSTSPKAD----- 91
+L N V+ T++ +V +LPPLSL+NE+++ +G++ L+QV+TFL+ VT + AD
Sbjct: 187 SLCNDVIHTAIEVVSSLPPLSLANESKIPPMGLDCLSQVTTFLK-GVTIPNSGADTLGRR 245
Query: 92 ---------KTVQSSLRSRVPLTKSLPPYNAALNLLEEVLRPATHYQVDLIRSACLVYLI 142
+ SLR + + +A +N +E+ ++ Q +I C + ++
Sbjct: 246 LASELLLGLAAQRGSLRYLLEWIEMALGASAVVNSMEKSKLLSS--QEGMISFDCFMTIL 303
Query: 143 LV-----------------TLADDNIKPLGD------RKSSNSNTDIDSTSTPKLTYNIG 179
+ T D + L + + +D T + G
Sbjct: 304 MQMRRSLGSSADRSQWREPTRTSDGLCSLYEAALCLFEEVCRMASDYSRTCASPDSIQTG 363
Query: 180 DTDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGG 239
DT I +VY WG N HQ+++ + K +P+L S+ + IEAGQ+CTF++ + G
Sbjct: 364 DTPIVSETCEVYVWGSNSSHQLVEGTQEKILQPKLAPSFSDAQTIEAGQYCTFVISTDGS 423
Query: 240 LLVYGKG---WLGLANTTIQPLPKRVPLEA--AIVSLSVSKCSEAHVLTVTSEGEVYSWG 294
+ GKG LGL ++ Q K++ E +I +S SK S+ H L T+EGEV+SWG
Sbjct: 424 VRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFSWG 483
Query: 295 VGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRL 354
G++GKLGHGN+ +Q+ PKLI G L GK V VSAG+ HSAAVTEDG LYTWGEGD GRL
Sbjct: 484 DGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGRL 543
Query: 355 GHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVT 414
GHGD SR+ PTLV ++S+VG VSCG SHT+ LS+DG TVWS G G+ GKLGH DT +V
Sbjct: 544 GHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRVY 603
Query: 415 TPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG----LGLRSSSISFHTPVLVTGLS 470
PKVIEAL+ +RKVCAG+ S+ALT G V+ WG LG SS + P L+ L+
Sbjct: 604 KPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLGCGSSEATALRPKLIEELA 663
Query: 471 SHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQI 530
+ +IVD+SIGDSH LALS NEVYAWG+N+MGQCGQ N + P+ +P KV GL+ + ++QI
Sbjct: 664 ATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGNSTGPITKPKKVSGLDGIAIQQI 723
Query: 531 CAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTFTLIREFLEQYSACFETGDYI---PF 587
AG+ S+A+T P + + + P CVD+ TF+ +R FLE+Y C + I PF
Sbjct: 724 SAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLRSFLERY--CDKINSEIPPLPF 781
Query: 588 CSKVTHAQFILLLLRLLSSHLYLALIGARSSSVLGNETAALRHVLFKLVDMETSPEIETL 647
S H F+ L L+LLS+HL LAL G ++S+LG + LR++LF+L+D EI+ +
Sbjct: 782 PSSREHHNFLKLCLKLLSNHLALALAGGVATSILGRQAGPLRNLLFRLMDSTVPDEIQEV 841
Query: 648 LTDCLAIGASLLLPPVVEQLDLLKTLLSQD----HPLSNGQRMLLGVITSSLHKNEELAH 703
+ + L++GA++LLPP+ E+++LL +LL Q LS GQRM L +I +SL + +A
Sbjct: 842 VIETLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSKGQRMQLDIILTSLQDHTHVAS 901
Query: 704 IFYFDQNQDTNIL-------------------------MLEDLLKISCRKSYAYTLTHF- 737
+ + D L + E L+K R YT F
Sbjct: 902 LLGYSSPSDAADLSSVCTGYGNLSDQPYGTQSCHPDTHLAEILMKTLLRNLGFYTDQAFG 961
Query: 738 --QSNACKV------SPQETPV---SQVVTLLQSLIITQYVVKHSEICEEV--YQHYLDI 784
+ N+ K S P + +L + L+ ++ SE V +L +
Sbjct: 962 ELEKNSDKFLLGTSSSENSQPAHLHELLCSLQKQLLAFCHINNISENSSSVALLHKHLQL 1021
Query: 785 VFPHVIDILERSIAWVNQ----GKDIEVLNELLYNSLAGKILFSIVHSLL---INIHR-- 835
+ PH DI RS + + G E L +++Y S AG +L IV+SLL +++ R
Sbjct: 1022 LLPHATDIYSRSANLLKESPWNGSVGEKLRDVIYVSAAGSMLCQIVNSLLLLPVSVARPL 1081
Query: 836 --------SMYPTLRYFLAILPLLDSLNQLLPMQGN-----------YTETNSFLWLIDM 876
L L LL+ P+ G S++WL+D+
Sbjct: 1082 LSYLLDLLPPLDCLNRLLPAAALLEDQELQWPLHGGPELIDPAGVPLPQPAQSWVWLVDL 1141
Query: 877 ERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIID 925
ER +ALLIG+ LG ML G P + EE +T +W+KT L S G+E T +D
Sbjct: 1142 ERTIALLIGRCLGGMLQGSPVSPEEQDTAYWMKTPLFSDGVEMDTPQLD 1190
|
Source: Ovis aries Species: Ovis aries Genus: Ovis Family: Bovidae Order: Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|224061683|ref|XP_002192615.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Taeniopygia guttata] | Back alignment and taxonomy information |
|---|
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 382/1022 (37%), Positives = 550/1022 (53%), Gaps = 129/1022 (12%)
Query: 37 TLGNQVLTTSLSIVRNLPPLSLSNETQLSSLGIESLTQVSTFLRQTVTSTSPKADKTVQS 96
+L N V+ T++ +V +LPPLSL+NE+++ +G++ L+QV+TFL+ VT + AD T+
Sbjct: 187 SLCNDVIYTAIEVVSSLPPLSLANESKIPPMGLDCLSQVTTFLK-GVTIPNSGAD-TLGR 244
Query: 97 SLRSRVPLTKSLPPYNAALNLLEEVLRPA--------THYQVDLIRS-----ACLVYLIL 143
L S + L L AL L E + A T + L++S + ++ +
Sbjct: 245 RLASELLL--GLAAQRGALRYLLEWIEMALGASAVVNTMEKTKLLQSPEGMISFDCFMSI 302
Query: 144 VTLADDNIKPLGDRKSSNSNT-------------------------DIDSTSTPKLTYNI 178
+T ++ DR T D T +
Sbjct: 303 LTQMRRSLGSSADRSQWREPTRTSDGLCSLYEAALCLFEEVCRMASDYSRTCASPDSIQT 362
Query: 179 GDTDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTG 238
GD I +VY WG N HQ+++ + K +P+L S S+ + IEAGQ+CTF++ + G
Sbjct: 363 GDAPIVSETCEVYVWGSNSSHQLVEGTQEKILQPKLASSFSDAQTIEAGQYCTFVISTDG 422
Query: 239 GLLVYGKG---WLGLANTTIQPLPKRVPLEA--AIVSLSVSKCSEAHVLTVTSEGEVYSW 293
+ GKG LGL ++ Q K++ E +I +S SK S+ H L T+EGEV+SW
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFSW 482
Query: 294 GVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGR 353
G G++GKLGHGN+ +Q+ PKLI G L GK V VSAG+ HSAAVTEDG LYTWGEGD GR
Sbjct: 483 GDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGR 542
Query: 354 LGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKV 413
LGHGD SR+ PTLV ++ +VG VSCG SHT+ LS+DG TVWS G G+ GKLGH DT +V
Sbjct: 543 LGHGDSNSRNIPTLVKDIINVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRV 602
Query: 414 TTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG----LGLRSSSISFHTPVLVTGL 469
PKVIEAL+ +RKVCAG+ S+ALT G V+ WG LG SS + P L+ L
Sbjct: 603 YKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLGCGSSEATALRPKLIEEL 662
Query: 470 SSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQ 529
++ +IVD+SIGDSH LALS NEVYAWG+N+MGQCGQ N + P+ +P KV GL+ + ++Q
Sbjct: 663 AATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGNSTGPITKPKKVGGLDGIAIQQ 722
Query: 530 ICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTFTLIREFLEQYSACFETGDYIP--- 586
I AG+ S+A+T P + + + P CVD+ TF+ +R FLE Y C + IP
Sbjct: 723 ISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLRSFLEHY--CDKINSEIPPLP 780
Query: 587 FCSKVTHAQFILLLLRLLSSHLYLALIGARSSSVLGNETAALRHVLFKLVDMETSPEIET 646
F S H F+ L L+LLS+HL LAL G ++S+LG + LR++LF+L+D EI+
Sbjct: 781 FPSSREHHNFLKLCLKLLSNHLALALAGGVATSILGRQAGPLRNLLFRLMDSSVPDEIQE 840
Query: 647 LLTDCLAIGASLLLPPVVEQLDLLKTLLSQD----HPLSNGQRMLLGVITSSLHKNEELA 702
++ + L++GA++LLPP+ E+++LL +LL Q LS GQRM L +I +SL + +A
Sbjct: 841 VVIETLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSKGQRMQLDIILTSLQDHTHVA 900
Query: 703 HIF-------------------------YFDQNQDTNILMLEDLLKISCRKSYAYTLTHF 737
+ Y Q+ + + E L+K R YT F
Sbjct: 901 SLLGYSSPSDTTETASMCISYGNLSDQAYAVQSSHPDTHLAEILMKTLLRNLGFYTDQAF 960
Query: 738 ---QSNACKV-----SPQETPVSQVVTLLQSLIITQYVVKHSEICEE------VYQHYLD 783
+ N+ K S + + + + LL SL H E + +L
Sbjct: 961 GELEKNSDKFLLGTSSSENSQPAHLHELLCSLQKQLLAYCHINSVTENSSSVALLHKHLQ 1020
Query: 784 IVFPHVIDILERSIAWVNQ----GKDIEVLNELLYNSLAGKILFSIVHSLL---INIHRS 836
++ PH DI RS + + G E L +++Y S AG +L IV+SLL +++ R
Sbjct: 1021 LLLPHATDIYSRSATLLKESSWNGSVGEKLRDVIYVSAAGSMLCQIVNSLLLLPVSVARP 1080
Query: 837 MYPTL----------RYFLAILPLLDSLNQLLPMQGNY-----------TETNSFLWLID 875
+ L L LL+ P+ G S++WL+D
Sbjct: 1081 LLSYLLDLLPPLDRLNRLLPAAALLEDQELQWPLHGGPELIDPAGVPLPQPAQSWVWLVD 1140
Query: 876 MERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRH 935
+ER +ALLIG+ LG ML GPP + EE +T +WLKT L S G+E I +DK + +
Sbjct: 1141 LERTVALLIGRCLGGMLQGPPVSPEEQDTAYWLKTPLFSDGVE--MDIPHLDKCMSSLLE 1198
Query: 936 VS 937
V+
Sbjct: 1199 VA 1200
|
Source: Taeniopygia guttata Species: Taeniopygia guttata Genus: Taeniopygia Family: Estrildidae Order: Passeriformes Class: Aves Phylum: Chordata Superkingdom: Eukaryota |
| >gi|395822793|ref|XP_003784693.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Otolemur garnettii] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 378/1011 (37%), Positives = 549/1011 (54%), Gaps = 129/1011 (12%)
Query: 37 TLGNQVLTTSLSIVRNLPPLSLSNETQLSSLGIESLTQVSTFLRQTVTSTSPKAD----- 91
+L N V+ T++ +V +LPPLSL+NE+++ +G++ L+QV+TFL+ VT + AD
Sbjct: 187 SLCNDVIHTAIEVVSSLPPLSLANESKIPPMGLDCLSQVTTFLK-GVTIPNSGADILGRR 245
Query: 92 ---------KTVQSSLRSRVPLTKSLPPYNAALNLLEEVLRPATHYQVDLIRSACLVYLI 142
+ SLR + + +A +N +E+ ++ Q +I C ++
Sbjct: 246 LASELLLGLAAQRGSLRYLLEWIEMALGASAVVNTMEKSKLLSS--QEGMISFDC--FMT 301
Query: 143 LVTLADDNIKPLGDRKSSNSNT-------------------------DIDSTSTPKLTYN 177
++T ++ DR T D T +
Sbjct: 302 ILTQMRRSLGSSADRSQWREPTRTSDGLCSLYEAALCLFEEVCRMASDYSRTCASPDSIQ 361
Query: 178 IGDTDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDST 237
GD I +VY WG N HQ+++ + K +P+L S+ + IEAGQ+CTF++ +
Sbjct: 362 TGDAPIVSETCEVYVWGSNSSHQLVEGTQEKILQPKLAPSFSDAQTIEAGQYCTFVISTD 421
Query: 238 GGLLVYGKG---WLGLANTTIQPLPKRVPLEA--AIVSLSVSKCSEAHVLTVTSEGEVYS 292
G + GKG LGL ++ Q K++ E +I +S SK S+ H L T+EGEV+S
Sbjct: 422 GSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481
Query: 293 WGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHG 352
WG G++GKLGHGN+ +Q+ PKLI G L GK V VSAG+ HSAAVTEDG LYTWGEGD G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541
Query: 353 RLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGK 412
RLGHGD SR+ PTLV ++S+VG VSCG SHT+ LS+DG TVWS G G+ GKLGH DT +
Sbjct: 542 RLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNR 601
Query: 413 VTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG----LGLRSSSISFHTPVLVTG 468
V PKVIEAL+ +RKVCAG+ S+ALT G V+ WG LG SS + P L+
Sbjct: 602 VYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLGCGSSEATALRPKLIEE 661
Query: 469 LSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVR 528
L++ +IVD+SIGDSH LALS NEVYAWG+N+MGQCGQ N + P+ +P KV GL+ + ++
Sbjct: 662 LAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGNSTGPITKPKKVSGLDGIAIQ 721
Query: 529 QICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTFTLIREFLEQYSACFETGDYI--- 585
QI AG+ S+A+T P + + + P CVD+ TF+ +R FLE+Y C + I
Sbjct: 722 QISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLRSFLERY--CDKINSEIPPL 779
Query: 586 PFCSKVTHAQFILLLLRLLSSHLYLALIGARSSSVLGNETAALRHVLFKLVDMETSPEIE 645
PF S H F+ L L+LLS+HL LAL G ++S+LG + LR++LF+L+D EI+
Sbjct: 780 PFPSSREHHNFLKLCLKLLSNHLALALAGGVATSILGRQAGPLRNLLFRLMDSTVPDEIQ 839
Query: 646 TLLTDCLAIGASLLLPPVVEQLDLLKTLLSQD----HPLSNGQRMLLGVITSSLHKNEEL 701
++ + L++GA++LLPP+ E+++LL +LL Q LS GQRM L +I +SL + +
Sbjct: 840 EVVIETLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSKGQRMQLDIILTSLQDHTHV 899
Query: 702 AHIFYFDQNQDTNIL-------------------------MLEDLLKISCRKSYAYTLTH 736
A + + D L + E L+K R YT
Sbjct: 900 ASLLGYSSPSDAADLSSVCTGYGNLSDQPYGTQSCHPDTHLAEILMKTLLRNLGFYTDQA 959
Query: 737 F---QSNACKV------SPQETPV---SQVVTLLQSLIITQYVVKHSEICEEV--YQHYL 782
F + N+ K S P + +L + L+ ++ SE V +L
Sbjct: 960 FGELEKNSDKFLLGTSSSENSQPAHLHELLCSLQKQLLAFCHINNISENSSSVALLHKHL 1019
Query: 783 DIVFPHVIDILERSIAWVNQ----GKDIEVLNELLYNSLAGKILFSIVHSLL---INIHR 835
++ PH DI RS + + G E L +++Y S AG +L IV+SLL +++ R
Sbjct: 1020 QLLLPHATDIYSRSANLLKESPWNGSVGEKLRDVIYVSAAGSMLCQIVNSLLLLPVSVAR 1079
Query: 836 SMYPTLRYFLA-------ILPLLDSL-NQLL--PMQGN-----------YTETNSFLWLI 874
+ L L +LP D L +Q L P+ G S++WL+
Sbjct: 1080 PLLSYLLDLLPPLDCLNRLLPAADLLEDQELQWPLHGGPELIDPAGVPLPQPAQSWVWLV 1139
Query: 875 DMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIID 925
D+ER +ALLIG+ LG ML G P + EE +T +W+KT L S G+E T +D
Sbjct: 1140 DLERTIALLIGRCLGGMLQGSPVSPEEQDTAYWMKTPLFSDGVEMDTPQLD 1190
|
Source: Otolemur garnettii Species: Otolemur garnettii Genus: Otolemur Family: Galagidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|410961060|ref|XP_003987103.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC1 [Felis catus] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1438), Expect = e-155, Method: Compositional matrix adjust.
Identities = 373/1009 (36%), Positives = 545/1009 (54%), Gaps = 125/1009 (12%)
Query: 37 TLGNQVLTTSLSIVRNLPPLSLSNETQLSSLGIESLTQVSTFLRQTVTSTSPKAD----- 91
+L N V+ T++ +V +LPPLSL+NE+++ +G++ L+QV+TFL+ VT + AD
Sbjct: 187 SLCNDVIHTAIEVVSSLPPLSLANESKIPPMGLDCLSQVTTFLK-GVTIPNSGADTLGRR 245
Query: 92 ---------KTVQSSLRSRVPLTKSLPPYNAALNLLEEVLRPATHYQVDLIRSACLVYLI 142
+ SLR + + +A +N +E+ ++ Q +I C + ++
Sbjct: 246 LASELLLGLAAQRGSLRYLLEWIEMALGASAVVNSMEKSKLLSS--QEGMISFDCFMTIL 303
Query: 143 LV-----------------TLADDNIKPLGD------RKSSNSNTDIDSTSTPKLTYNIG 179
+ T D + L + + +D T + G
Sbjct: 304 MQMRRSLGSSADRSQWREPTRTSDGLCSLYEAALCLFEEVCRMASDYSRTCASPDSIQTG 363
Query: 180 DTDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGG 239
DT I +VY WG N HQ+++ + K +P+L S+ + IEAGQ+CTF++ + G
Sbjct: 364 DTPIVSETCEVYVWGSNSSHQLVEGTQEKILQPKLAPSFSDAQTIEAGQYCTFVISTDGS 423
Query: 240 LLVYGKG---WLGLANTTIQPLPKRVPLEA--AIVSLSVSKCSEAHVLTVTSEGEVYSWG 294
+ GKG LGL ++ Q K++ E +I +S SK S+ H L T+EGEV+SWG
Sbjct: 424 VRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFSWG 483
Query: 295 VGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRL 354
G++GKLGHGN+ +Q+ PKLI G L GK V VSAG+ HSAAVTEDG LYTWGEGD GRL
Sbjct: 484 DGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGRL 543
Query: 355 GHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVT 414
GHGD SR+ PTLV ++S+VG VSCG SHT+ LS+DG TVWS G G+ GKLGH DT +V
Sbjct: 544 GHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRVY 603
Query: 415 TPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG----LGLRSSSISFHTPVLVTGLS 470
PKV+EAL+ +RKVCAG+ S+ALT G V+ WG LG SS + P L+ L+
Sbjct: 604 KPKVVEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLGCGSSEATALRPKLIEELA 663
Query: 471 SHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQI 530
+ +IVD+SIGDSH LALS NEVYAWG+N+MGQCGQ N + P+ +P KV GL+ + ++QI
Sbjct: 664 ATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGNSTGPITKPKKVSGLDGIAIQQI 723
Query: 531 CAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTFTLIREFLEQYSACFETGDYI---PF 587
AG+ S+A+T P + + + P CVD+ TF+ +R FLE+Y C + I PF
Sbjct: 724 SAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLRSFLERY--CDKINSEIPPLPF 781
Query: 588 CSKVTHAQFILLLLRLLSSHLYLALIGARSSSVLGNETAALRHVLFKLVDMETSPEIETL 647
S H F+ L L+LLS+HL LAL G ++S+LG + LR++LF+L+D EI+ +
Sbjct: 782 PSSREHHSFLKLCLKLLSNHLALALAGGVATSILGRQAGPLRNLLFRLMDSTVPDEIQEV 841
Query: 648 LTDCLAIGASLLLPPVVEQLDLLKTLLSQD----HPLSNGQRMLLGVITSSLHKNEELAH 703
+ + L++GA++LLPP+ E+++LL +LL Q LS GQRM L +I +SL + +A
Sbjct: 842 VIETLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSKGQRMQLDIILTSLQDHTHVAS 901
Query: 704 IFYFDQNQDTNIL-------------------------MLEDLLKISCRKSYAYTLTHF- 737
+ + D L + E L+K R YT F
Sbjct: 902 LLGYSSPSDAADLSSVCTGYGNLSDQPYGTQSCHPDTHLAEILMKTLLRNLGFYTDQAFG 961
Query: 738 --QSNACKV------SPQETPV---SQVVTLLQSLIITQYVVKHSEICEEV--YQHYLDI 784
+ N+ K S P + +L + L+ ++ SE V +L +
Sbjct: 962 ELEKNSDKFLLGTSSSENSQPAHLHELLCSLQKQLLAFCHINNISENSSSVALLHKHLQL 1021
Query: 785 VFPHVIDILERSIAWVNQ----GKDIEVLNELLYNSLAGKILFSIVHSLL---INIHR-- 835
+ PH DI RS + + G E L +++Y S AG +L IV+SLL +++ R
Sbjct: 1022 LLPHATDIYSRSANLLKESPWNGSVGEKLRDVIYVSAAGSMLCQIVNSLLLLPVSVARPL 1081
Query: 836 --------SMYPTLRYFLAILPLLDSLNQLLPMQGN-----------YTETNSFLWLIDM 876
L L LL+ P+ G S++WL+D+
Sbjct: 1082 LSYLLDLLPPLDCLNRLLPAAALLEDQELQWPLHGGPELIDPAGMPLPQPAQSWVWLVDL 1141
Query: 877 ERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIID 925
ER +ALLIG+ LG ML G P + EE +T +W+KT L S G+E T +D
Sbjct: 1142 ERTIALLIGRCLGGMLQGSPVSPEEQDTAYWMKTPLFSDGVEMDTPQLD 1190
|
Source: Felis catus Species: Felis catus Genus: Felis Family: Felidae Order: Carnivora Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|281347310|gb|EFB22894.1| hypothetical protein PANDA_002155 [Ailuropoda melanoleuca] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1438), Expect = e-155, Method: Compositional matrix adjust.
Identities = 372/1009 (36%), Positives = 545/1009 (54%), Gaps = 125/1009 (12%)
Query: 37 TLGNQVLTTSLSIVRNLPPLSLSNETQLSSLGIESLTQVSTFLRQTVTSTSPKAD----- 91
+L N V+ T++ +V +LPPLSL+NE+++ +G++ L+QV+TFL+ VT + AD
Sbjct: 187 SLCNDVIHTAIEVVSSLPPLSLANESKIPPMGLDCLSQVTTFLK-GVTIPNSGADTLGRR 245
Query: 92 ---------KTVQSSLRSRVPLTKSLPPYNAALNLLEEVLRPATHYQVDLIRSACLVYLI 142
+ SLR + + +A +N +E+ ++ Q +I C + ++
Sbjct: 246 LASELLLGLAAQRGSLRYLLEWIEMALGASAVVNSMEKSKLLSS--QEGMISFDCFMTIL 303
Query: 143 LV-----------------TLADDNIKPLGD------RKSSNSNTDIDSTSTPKLTYNIG 179
+ T D + L + + +D T + G
Sbjct: 304 MQMRRSLGSSADRSQWREPTRTSDGLCSLYEAALCLFEEVCRMASDYSRTCASPDSIQTG 363
Query: 180 DTDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGG 239
D I +VY WG N HQ+++ + K +P+L S+ + IEAGQ+CTF++ + G
Sbjct: 364 DAPIVSETCEVYVWGSNSSHQLVEGTQEKILQPKLAPSFSDAQTIEAGQYCTFVISTDGS 423
Query: 240 LLVYGKG---WLGLANTTIQPLPKRVPLEA--AIVSLSVSKCSEAHVLTVTSEGEVYSWG 294
+ GKG LGL ++ Q K++ E +I +S SK S+ H L T+EGEV+SWG
Sbjct: 424 VRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFSWG 483
Query: 295 VGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRL 354
G++GKLGHGN+ +Q+ PKLI G L GK V VSAG+ HSAAVTEDG LYTWGEGD GRL
Sbjct: 484 DGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGRL 543
Query: 355 GHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVT 414
GHGD SR+ PTLV ++S+VG VSCG SHT+ LS+DG TVWS G G+ GKLGH DT +V
Sbjct: 544 GHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRVY 603
Query: 415 TPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG----LGLRSSSISFHTPVLVTGLS 470
PKV+EAL+ +RKVCAG+ S+ALT G V+ WG LG SS + P L+ L+
Sbjct: 604 KPKVVEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLGCGSSEATALRPKLIEELA 663
Query: 471 SHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQI 530
+ +IVD+SIGDSH LALS NEVYAWG+N+MGQCGQ N + P+ +P KV GL+ + ++QI
Sbjct: 664 ATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGNSTGPITKPKKVSGLDGIAIQQI 723
Query: 531 CAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTFTLIREFLEQYSACFETGDYI---PF 587
AG+ S+A+T P + + + P CVD+ TF+ +R FLE+Y C + I PF
Sbjct: 724 SAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLRSFLERY--CDKINSEIPPLPF 781
Query: 588 CSKVTHAQFILLLLRLLSSHLYLALIGARSSSVLGNETAALRHVLFKLVDMETSPEIETL 647
S H F+ L L+LLS+HL LAL G ++S+LG + LR++LF+L+D EI+ +
Sbjct: 782 PSSREHHNFLKLCLKLLSNHLALALAGGVATSILGRQAGPLRNLLFRLMDSTVPDEIQEV 841
Query: 648 LTDCLAIGASLLLPPVVEQLDLLKTLLSQD----HPLSNGQRMLLGVITSSLHKNEELAH 703
+ + L++GA++LLPP+ E+++LL +LL Q LS GQRM L +I +SL + +A
Sbjct: 842 VIETLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSKGQRMQLDIILTSLQDHTHVAS 901
Query: 704 IFYFDQNQDTNIL-------------------------MLEDLLKISCRKSYAYTLTHF- 737
+ + D L + E L+K R YT F
Sbjct: 902 LLGYSSPSDAADLSSVCTGYGNLSDQPYGAQSCHPDTHLAEILMKTLLRNLGFYTDQAFG 961
Query: 738 --QSNACKV------SPQETPV---SQVVTLLQSLIITQYVVKHSEICEEV--YQHYLDI 784
+ N+ K S P + +L + L+ ++ SE V +L +
Sbjct: 962 ELEKNSDKFLLGTSSSENSQPAHLHELLCSLQKQLLAFCHINNISENSSSVALLHKHLQL 1021
Query: 785 VFPHVIDILERSIAWVNQ----GKDIEVLNELLYNSLAGKILFSIVHSLL---INIHR-- 835
+ PH DI RS + + G E L +++Y S AG +L IV+SLL +++ R
Sbjct: 1022 LLPHATDIYSRSANLLKESPWNGSVGEKLRDVIYVSAAGSMLCQIVNSLLLLPVSVARPL 1081
Query: 836 --------SMYPTLRYFLAILPLLDSLNQLLPMQGN-----------YTETNSFLWLIDM 876
L L LL+ P+ G +++WL+D+
Sbjct: 1082 LSYLLDLLPPLDCLNRLLPAAALLEDQELQWPLHGGPELIDPAGMPLPQPAQAWVWLVDL 1141
Query: 877 ERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIID 925
ER +ALLIG+ LG MLLG P + EE +T +W+KT L S G+E T +D
Sbjct: 1142 ERTIALLIGRCLGGMLLGSPVSPEEQDTAYWMKTPLFSDGVEMDTPQLD 1190
|
Source: Ailuropoda melanoleuca Species: Ailuropoda melanoleuca Genus: Ailuropoda Family: Ursidae Order: Carnivora Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1858 | ||||||
| UNIPROTKB|F1MNS0 | 4857 | HERC1 "Uncharacterized protein | 0.286 | 0.109 | 0.46 | 1.4e-227 | |
| UNIPROTKB|Q15751 | 4861 | HERC1 "Probable E3 ubiquitin-p | 0.286 | 0.109 | 0.46 | 7.8e-227 | |
| UNIPROTKB|F1S098 | 4859 | HERC1 "Uncharacterized protein | 0.286 | 0.109 | 0.458 | 3.2e-225 | |
| UNIPROTKB|E2QYQ5 | 4863 | HERC1 "Uncharacterized protein | 0.286 | 0.109 | 0.450 | 1.9e-223 | |
| UNIPROTKB|E1C4H7 | 4863 | HERC1 "Uncharacterized protein | 0.286 | 0.109 | 0.460 | 5e-222 | |
| RGD|1306366 | 1203 | Herc1 "HECT and RLD domain con | 0.286 | 0.442 | 0.456 | 6e-152 | |
| UNIPROTKB|J9NWD8 | 4118 | HERC1 "Uncharacterized protein | 0.184 | 0.083 | 0.469 | 1.1e-124 | |
| UNIPROTKB|E1BW48 | 4841 | HERC2 "Uncharacterized protein | 0.219 | 0.084 | 0.330 | 6.6e-53 | |
| UNIPROTKB|E1C8K2 | 4841 | HERC2 "Uncharacterized protein | 0.219 | 0.084 | 0.330 | 6.6e-53 | |
| ZFIN|ZDB-GENE-070718-6 | 4832 | herc2 "hect domain and RLD 2" | 0.263 | 0.101 | 0.313 | 2.3e-52 |
| UNIPROTKB|F1MNS0 HERC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1203 (428.5 bits), Expect = 1.4e-227, Sum P(9) = 1.4e-227
Identities = 253/550 (46%), Positives = 349/550 (63%)
Query: 179 GDTDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTG 238
GDT I +VY WG N HQ+++ + K +P+L S+ + IEAGQ+CTF++ + G
Sbjct: 363 GDTPIVSETCEVYVWGSNSSHQLVEGTQEKILQPKLAPSFSDAQTIEAGQYCTFVISTDG 422
Query: 239 GLLVYGKGW---LGLANTTIQPLPKRVPLEA--AIVSLSVSKCSEAHVLTVTSEGEVYSW 293
+ GKG LGL ++ Q K++ E +I +S SK S+ H L T+EGEV+SW
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFSW 482
Query: 294 GVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGR 353
G G++GKLGHGN+ +Q+ PKLI G L GK V VSAG+ HSAAVTEDG LYTWGEGD GR
Sbjct: 483 GDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGR 542
Query: 354 LGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKV 413
LGHGD SR+ PTLV ++S+VG VSCG SHT+ LS+DG TVWS G G+ GKLGH DT +V
Sbjct: 543 LGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRV 602
Query: 414 TTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG----LGLRSSSISFHTPVLVTGL 469
PKVIEAL+ +RKVCAG+ S+ALT G V+ WG LG SS + P L+ L
Sbjct: 603 YKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLGCGSSEATALRPKLIEEL 662
Query: 470 SSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQ 529
++ +IVD+SIGDSH LALS NEVYAWG+N+MGQCGQ N + P+ +P KV GL+ + ++Q
Sbjct: 663 AATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGNSTGPITKPKKVSGLDGIAIQQ 722
Query: 530 ICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTFTLIREFLEQYSACFETGDYIP--- 586
I AG+ S+A+T P + + + P CVD+ TF+ +R FLE+Y C + IP
Sbjct: 723 ISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLRSFLERY--CDKINSEIPPLP 780
Query: 587 FCSKVTHAQFIXXXXXXXXXXXXXXXIGARSSSVLGNETAALRHVLFKLVDMETSPEIET 646
F S H F+ G ++S+LG + LR++LF+L+D EI+
Sbjct: 781 FPSSREHHNFLKLCLKLLSNHLALALAGGVATSILGRQAGPLRNLLFRLMDSTVPDEIQE 840
Query: 647 LLTDCLAIGASLLLPPVVEQLDLLKTLLSQD----HPLSNGQRMLLGVITSSLHKNEELA 702
++ + L++GA++LLPP+ E+++LL +LL Q LS GQRM L +I +SL + +A
Sbjct: 841 VVIETLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSKGQRMQLDIILTSLQDHTHVA 900
Query: 703 HIFYFDQNQD 712
+ + D
Sbjct: 901 SLLGYSSPSD 910
|
|
| UNIPROTKB|Q15751 HERC1 "Probable E3 ubiquitin-protein ligase HERC1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1199 (427.1 bits), Expect = 7.8e-227, Sum P(9) = 7.8e-227
Identities = 253/550 (46%), Positives = 348/550 (63%)
Query: 179 GDTDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTG 238
GD I +VY WG N HQ+++ + K +P+L S+ + IEAGQ+CTF++ + G
Sbjct: 363 GDAPIVSETCEVYVWGSNSSHQLVEGTQEKILQPKLAPSFSDAQTIEAGQYCTFVISTDG 422
Query: 239 GLLVYGKGW---LGLANTTIQPLPKRVPLEA--AIVSLSVSKCSEAHVLTVTSEGEVYSW 293
+ GKG LGL ++ Q K++ E +I +S SK S+ H L T+EGEV+SW
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFSW 482
Query: 294 GVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGR 353
G G++GKLGHGN+ +Q+ PKLI G L GK V VSAG+ HSAAVTEDG LYTWGEGD GR
Sbjct: 483 GDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGR 542
Query: 354 LGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKV 413
LGHGD SR+ PTLV ++S+VG VSCG SHT+ LS+DG TVWS G G+ GKLGH DT +V
Sbjct: 543 LGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRV 602
Query: 414 TTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG----LGLRSSSISFHTPVLVTGL 469
PKVIEAL+ +RKVCAG+ S+ALT G V+ WG LG SS + P L+ L
Sbjct: 603 YKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLGCGSSEATALRPKLIEEL 662
Query: 470 SSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQ 529
++ +IVDVSIGDSH LALS NEVYAWG+N+MGQCGQ N + P+ +P KV GL+ + ++Q
Sbjct: 663 AATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGNSTGPITKPKKVSGLDGIAIQQ 722
Query: 530 ICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTFTLIREFLEQYSACFETGDYIP--- 586
I AG+ S+A+T P + + + P CVD+ TF+ +R FLE+Y C + IP
Sbjct: 723 ISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLRSFLERY--CDKINSEIPPLP 780
Query: 587 FCSKVTHAQFIXXXXXXXXXXXXXXXIGARSSSVLGNETAALRHVLFKLVDMETSPEIET 646
F S H F+ G ++S+LG + LR++LF+L+D EI+
Sbjct: 781 FPSSREHHSFLKLCLKLLSNHLALALAGGVATSILGRQAGPLRNLLFRLMDSTVPDEIQE 840
Query: 647 LLTDCLAIGASLLLPPVVEQLDLLKTLLSQD----HPLSNGQRMLLGVITSSLHKNEELA 702
++ + L++GA++LLPP+ E+++LL +LL Q LS GQRM L +I +SL + +A
Sbjct: 841 VVIETLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSKGQRMQLDIILTSLQDHTHVA 900
Query: 703 HIFYFDQNQD 712
+ + D
Sbjct: 901 SLLGYSSPSD 910
|
|
| UNIPROTKB|F1S098 HERC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1198 (426.8 bits), Expect = 3.2e-225, Sum P(9) = 3.2e-225
Identities = 252/550 (45%), Positives = 348/550 (63%)
Query: 179 GDTDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTG 238
GD I +VY WG N HQ+++ + K +P+L S+ + IEAGQ+CTF++ + G
Sbjct: 363 GDAPIVSETCEVYVWGSNSSHQLVEGTQEKILQPKLAPSFSDAQTIEAGQYCTFVISTDG 422
Query: 239 GLLVYGKGW---LGLANTTIQPLPKRVPLEA--AIVSLSVSKCSEAHVLTVTSEGEVYSW 293
+ GKG LGL ++ Q K++ E +I +S SK S+ H L T+EGEV+SW
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFSW 482
Query: 294 GVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGR 353
G G++GKLGHGN+ +Q+ PKLI G L GK V VSAG+ HSAAVTEDG LYTWGEGD GR
Sbjct: 483 GDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGR 542
Query: 354 LGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKV 413
LGHGD SR+ PTLV ++S+VG VSCG SHT+ LS+DG TVWS G G+ GKLGH DT +V
Sbjct: 543 LGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRV 602
Query: 414 TTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG----LGLRSSSISFHTPVLVTGL 469
PKVIEAL+ +RKVCAG+ S+ALT G V+ WG LG SS + P L+ L
Sbjct: 603 YKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLGCGSSEATALRPKLIEEL 662
Query: 470 SSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQ 529
++ +IVD+SIGDSH LALS NEVYAWG+N+MGQCGQ N + P+ +P KV GL+ + ++Q
Sbjct: 663 AATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGNSTGPITKPKKVSGLDGIAIQQ 722
Query: 530 ICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTFTLIREFLEQYSACFETGDYIP--- 586
I AG+ S+A+T P + + + P CVD+ TF+ +R FLE+Y C + IP
Sbjct: 723 ISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLRSFLERY--CDKINSEIPPLP 780
Query: 587 FCSKVTHAQFIXXXXXXXXXXXXXXXIGARSSSVLGNETAALRHVLFKLVDMETSPEIET 646
F S H F+ G ++S+LG + LR++LF+L+D EI+
Sbjct: 781 FPSSREHHNFLKLCLKLLSNHLALALAGGVATSILGRQAGPLRNLLFRLMDSTVPDEIQE 840
Query: 647 LLTDCLAIGASLLLPPVVEQLDLLKTLLSQD----HPLSNGQRMLLGVITSSLHKNEELA 702
++ + L++GA++LLPP+ E+++LL +LL Q LS GQRM L +I +SL + +A
Sbjct: 841 VVIETLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSKGQRMQLDIILTSLQDHTHVA 900
Query: 703 HIFYFDQNQD 712
+ + D
Sbjct: 901 SLLGYSSPSD 910
|
|
| UNIPROTKB|E2QYQ5 HERC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1178 (419.7 bits), Expect = 1.9e-223, Sum P(9) = 1.9e-223
Identities = 248/551 (45%), Positives = 346/551 (62%)
Query: 179 GDTDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTG 238
GD I +VY WG N HQ+++ + K +P++ S+ + IEAGQ+CTF++ + G
Sbjct: 363 GDAPIVSETCEVYVWGSNSSHQLVEGTQEKILQPKMALSFSDAQTIEAGQYCTFVISTDG 422
Query: 239 GLLVYGKGW---LGLANTTIQPLPKRVPLEA--AIVSLSVSKCSEAHVLTVTSEGEVYSW 293
+ GKG LGL ++ Q K++ E +I +S SK S+ H L T+EGEV+SW
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFSW 482
Query: 294 GVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGR 353
G G++GKLGHGN+ +Q+ PKLI G L GK V VSAG+ HSAAVTEDG LYTWGEGD GR
Sbjct: 483 GDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGR 542
Query: 354 LGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSG-NLGKLGHEDTGK 412
LGHGD SR+ PTLV ++S+VG VSCG SHT+ LS+DG TVWS G G N+GKLGH DT +
Sbjct: 543 LGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNVGKLGHGDTNR 602
Query: 413 VTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG----LGLRSSSISFHTPVLVTG 468
V PKV+EAL+ +RKVCAG+ S+ALT G V+ WG LG SS + P L+
Sbjct: 603 VYKPKVVEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLGCGSSEATALRPKLIEE 662
Query: 469 LSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVR 528
L++ +IVD+SIGDSHV NEVYAWG+N+MGQCGQ N + P+ +P KV GL+ + ++
Sbjct: 663 LAATRIVDISIGDSHVWLFVMDNEVYAWGNNSMGQCGQGNSTGPITKPKKVSGLDGIAIQ 722
Query: 529 QICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTFTLIREFLEQYSACFETGDYIP-- 586
QI AG+ S+A+T P + + + P CVD+ TF+ +R FLE+Y C + IP
Sbjct: 723 QISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLRSFLERY--CDKINSEIPPL 780
Query: 587 -FCSKVTHAQFIXXXXXXXXXXXXXXXIGARSSSVLGNETAALRHVLFKLVDMETSPEIE 645
F S H F+ G ++S+LG + LR++LF+L+D EI+
Sbjct: 781 PFPSSREHHNFLKLCLKLLSNHLALALAGGVATSILGRQAGPLRNLLFRLMDSTVPDEIQ 840
Query: 646 TLLTDCLAIGASLLLPPVVEQLDLLKTLLSQD----HPLSNGQRMLLGVITSSLHKNEEL 701
++ + L++GA++LLPP+ E+++LL +LL Q LS GQRM L +I +SL + +
Sbjct: 841 EVVIETLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSKGQRMQLDIILTSLQDHTHV 900
Query: 702 AHIFYFDQNQD 712
A + + D
Sbjct: 901 ASLLGYSSPSD 911
|
|
| UNIPROTKB|E1C4H7 HERC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1203 (428.5 bits), Expect = 5.0e-222, Sum P(8) = 5.0e-222
Identities = 254/551 (46%), Positives = 348/551 (63%)
Query: 179 GDTDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTG 238
GD I +VY WG N HQ+++ + K +P+L S+ + IEAGQ+CTF++ + G
Sbjct: 363 GDAPIVSETCEVYVWGSNSSHQLVEGTQEKILQPKLAPSFSDAQTIEAGQYCTFVISTDG 422
Query: 239 GLLVYGKGW---LGLANTTIQPLPKRVPLEA--AIVSLSVSKCSEAHVLTVTSEGEVYSW 293
+ GKG LGL ++ Q K++ E +I +S SK S+ H L T+EGEV+SW
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFSW 482
Query: 294 GVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGR 353
G G++GKLGHGN+ +Q+ PKLI G L GK V VSAG+ HSAAVTEDG LYTWGEGD GR
Sbjct: 483 GDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGR 542
Query: 354 LGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKV 413
LGHGD SR+ PTLV ++S+VG VSCG SHT+ LS+DG TVWS G G+ GKLGH DT +V
Sbjct: 543 LGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRV 602
Query: 414 TTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG----LGLRSSSISFHTPVLVTGL 469
PKVIEAL+ +RKVCAG+ S+ALT G V+ WG LG SS + P L+ L
Sbjct: 603 YKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLGCGSSEATALRPKLIEEL 662
Query: 470 SSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQ 529
++ +IVD+SIGDSH LALS NEVYAWG+N+MGQCGQ N + P+ +P KV GL+ V ++Q
Sbjct: 663 AATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGNSTGPITKPKKVSGLDGVSIQQ 722
Query: 530 ICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTFTLIREFLEQYSACFETGDYIP--- 586
I AG+ S+A+T P + + + P CVD+ TF+ +R FLE Y C + IP
Sbjct: 723 ISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLRSFLEHY--CDKINSEIPPLP 780
Query: 587 FCSKVTHAQFIXXXXXXXXXXXXXXXIGARSSSVLGNETAALRHVLFKLVDMETSPEIET 646
F S H F+ G ++S+LG + LR++LF+L+D EI+
Sbjct: 781 FPSSREHHSFLKLCLKLLSNHLALALAGGVATSILGRQAGPLRNLLFRLMDSSVPDEIQE 840
Query: 647 LLTDCLAIGASLLLPPVVEQLDLLKTLLSQD----HPLSNGQRMLLGVITSSLHKNEELA 702
++ + L++GA++LLPP+ E+++LL +LL Q LS GQRM L +I +SL + +A
Sbjct: 841 VVIETLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSKGQRMQLDIILTSLQDHTHVA 900
Query: 703 HIFYFDQNQDT 713
+ + DT
Sbjct: 901 SLLGYSSPSDT 911
|
|
| RGD|1306366 Herc1 "HECT and RLD domain containing E3 ubiquitin protein ligase family member 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1195 (425.7 bits), Expect = 6.0e-152, Sum P(4) = 6.0e-152
Identities = 251/550 (45%), Positives = 348/550 (63%)
Query: 179 GDTDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTG 238
GD I +VY WG N HQ+++ + K +P+L S+ + IEAGQ+CTF++ + G
Sbjct: 363 GDAPIVSETCEVYVWGSNSSHQLVEGTQEKILQPKLAPSFSDAQTIEAGQYCTFVISTDG 422
Query: 239 GLLVYGKGW---LGLANTTIQPLPKRVPLEA--AIVSLSVSKCSEAHVLTVTSEGEVYSW 293
+ GKG LGL ++ Q K++ E +I +S SK S+ H L T+EGEV+SW
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFSW 482
Query: 294 GVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGR 353
G G++GKLGHGN+ +Q+ PKLI G L GK V VSAG+ HSAAVTEDG LYTWGEGD GR
Sbjct: 483 GDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGR 542
Query: 354 LGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKV 413
LGHGD SR+ PTLV ++S+VG VSCG SHT+ LS+DG TVWS G G+ GKLGH DT +V
Sbjct: 543 LGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRV 602
Query: 414 TTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG----LGLRSSSISFHTPVLVTGL 469
PKVIEAL+ +RKVCAG+ S+ALT G V+ WG LG SS + P L+ L
Sbjct: 603 YKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLGCGSSEATALRPKLIEEL 662
Query: 470 SSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQ 529
++ +IVD+SIGDSH L+LS NEVYAWG+N+MGQCGQ N + P+ +P KV GL+ + ++Q
Sbjct: 663 AATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQGNSTGPITKPKKVSGLDGIAIQQ 722
Query: 530 ICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTFTLIREFLEQYSACFETGDYIP--- 586
I AG+ S+A+T P + + + P CVD+ TF+ +R FLE+Y C + IP
Sbjct: 723 ISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLRSFLERY--CDKINSEIPPLP 780
Query: 587 FCSKVTHAQFIXXXXXXXXXXXXXXXIGARSSSVLGNETAALRHVLFKLVDMETSPEIET 646
F S H F+ G ++S+LG + LR++LF+L+D EI+
Sbjct: 781 FPSSREHHNFLKLCLKLLSNHLALALAGGVATSILGRQAGPLRNLLFRLMDSTVPDEIQE 840
Query: 647 LLTDCLAIGASLLLPPVVEQLDLLKTLLSQD----HPLSNGQRMLLGVITSSLHKNEELA 702
++ + L++GA++LLPP+ E+++LL +LL Q LS GQRM L +I +SL + +A
Sbjct: 841 VVIETLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSKGQRMQLDIILTSLQDHTHVA 900
Query: 703 HIFYFDQNQD 712
+ + D
Sbjct: 901 SLLGYSSPSD 910
|
|
| UNIPROTKB|J9NWD8 HERC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 808 (289.5 bits), Expect = 1.1e-124, Sum P(8) = 1.1e-124
Identities = 168/358 (46%), Positives = 225/358 (62%)
Query: 1276 HTEERNLAYYLSFIYSLTSVSTVCQLLATQPWIQSLLYLLSIS-PSGLCKXXXXXXXXXX 1334
H E +L +L F+ + S + +A+ W + LL + S SG+
Sbjct: 1205 HAAELHLGDFLVFLRRVVSSKAIQSKMASPKWTEVLLNIASQKCSSGIPLVGNLRTRLLA 1264
Query: 1335 XXXXXXILPHAQQG----ELGIITE-LLTQLSHNMWKVPRTVAHHNALKKEEELDKQIEH 1389
+LP + G ++ + E L + LS MW+ P A H KE+E ++I+
Sbjct: 1265 LHVLEAVLPACESGVEDDQMAQVVERLFSLLSDCMWETPIAQAKHAIQIKEKE--QEIKS 1322
Query: 1390 LYCPPPSGTSNASRQGYVDIDSVSFDKEKCVCCTVECGGQSLIHGPGTRGYGVANIGITR 1449
G + + I VSFD EK CC VE GQ L HG G +GYG+A+ G+T
Sbjct: 1323 ----QKQGELEEEDEN-LPIQEVSFDPEKAQCCLVE-NGQILTHGSGGKGYGLASTGVTS 1376
Query: 1450 GCYQWKFLIVNEHKGNEGTCIGVTRWPIRDYNHRTTGDMWLYRAYSGNVYHSGEQTTMLP 1509
GCYQWKF IV E++GNEGTC+GV+RWP+ D+NHRTT DMWLYRAYSGN+YH+GEQT L
Sbjct: 1377 GCYQWKFYIVKENRGNEGTCVGVSRWPVHDFNHRTTSDMWLYRAYSGNLYHNGEQTLTLS 1436
Query: 1510 SFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNANGEKVKIT 1569
SFTQGD+IT VLDM+A+T+SFGKNGEEP LAF+D+D +A LYP V+FYS+N GEKVKI
Sbjct: 1437 SFTQGDFITCVLDMEARTISFGKNGEEPKLAFEDVD-AAELYPCVMFYSSNP-GEKVKIC 1494
Query: 1570 DMTVCETPRDLLCGEPYCAPVPILMVESYISLLRQLHKIDRWKAHVNQCLLDRLSVIK 1627
DM + TPRDLL G+P C+PV ++ E+ I L+R LH+ DRW +N+ +++RL IK
Sbjct: 1495 DMQMRGTPRDLLPGDPICSPVAAVLAEATIQLIRILHRTDRWTYCINKKMMERLHKIK 1552
|
|
| UNIPROTKB|E1BW48 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 524 (189.5 bits), Expect = 6.6e-53, Sum P(5) = 6.6e-53
Identities = 146/442 (33%), Positives = 221/442 (50%)
Query: 280 HVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIM---GGLYGKRVTQVSAGHSHSAA 336
H L +++ GEV+SWG G+ G+LGHG+T+ PKLI G GK V ++ G ++SAA
Sbjct: 507 HYLALSANGEVFSWGCGDGGRLGHGDTVPLEEPKLISALSGKQAGKHVVHIACGSTYSAA 566
Query: 337 VTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGA--VSCG--ESHTLVLSQDGH 392
+T +G LYTWG G++GRLGHG + + P LVT L + VSCG ++ TL ++++G
Sbjct: 567 ITAEGELYTWGRGNYGRLGHGSSEDQTIPMLVTGLKGLKVIDVSCGSGDAQTLAVTENGQ 626
Query: 393 TVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLG 452
VWS G G+ GKLG + TPK+IE L+ + KV G+ FS+ALT DG V+ WG G
Sbjct: 627 -VWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDIVKVRCGSQFSIALTKDGQVYTWGKG 685
Query: 453 LRSS---SISFHT--PVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQ- 506
H P L+ GL +++DV+ G +H LAL++ +EV++WGSN QC
Sbjct: 686 DNQRLGHGTEEHVRYPKLLEGLKGKKVIDVAAGSTHCLALTEDSEVHSWGSND--QCQHF 743
Query: 507 DNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAF-TPLCVDVRPHTF 565
D +P+ + GL+ + I G S A++ S S S P VDV P TF
Sbjct: 744 DTLRITKPEPAALPGLDTKHIVGIACGPAQSFAWS---SCSEWSIGLRVPFVVDVCPMTF 800
Query: 566 TLIREFLEQYSACFE-TGDYIP----FCSKVTHAQFIXXXXXXXXXXXXXXX-IGARSSS 619
+ L Q + + + D+ P C V + +G
Sbjct: 801 EQLDLLLRQVTEGMDGSSDWPPPQEKECMAVATLNLLRLQLHAAISHQVDPECLGLGLGG 860
Query: 620 VLGNETAALRHVLFKLV-DMETSPEIETLLTDCLAIGASLLLPPVVEQLDLLKTLL---- 674
+L N +L+ + L + +++ L G S+LLP E+ L LL
Sbjct: 861 ILLN---SLKQTVVTLASNAGVLNTVQSAAQAVLQSGWSVLLPTAEERARALSALLPSAV 917
Query: 675 -SQDHPLSNGQRMLLGVITSSL 695
+ +S G+R ++ ++ SL
Sbjct: 918 SGNEMNVSPGRRFMIDLLVGSL 939
|
|
| UNIPROTKB|E1C8K2 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 524 (189.5 bits), Expect = 6.6e-53, Sum P(5) = 6.6e-53
Identities = 146/442 (33%), Positives = 221/442 (50%)
Query: 280 HVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIM---GGLYGKRVTQVSAGHSHSAA 336
H L +++ GEV+SWG G+ G+LGHG+T+ PKLI G GK V ++ G ++SAA
Sbjct: 507 HYLALSANGEVFSWGCGDGGRLGHGDTVPLEEPKLISALSGKQAGKHVVHIACGSTYSAA 566
Query: 337 VTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGA--VSCG--ESHTLVLSQDGH 392
+T +G LYTWG G++GRLGHG + + P LVT L + VSCG ++ TL ++++G
Sbjct: 567 ITAEGELYTWGRGNYGRLGHGSSEDQTIPMLVTGLKGLKVIDVSCGSGDAQTLAVTENGQ 626
Query: 393 TVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLG 452
VWS G G+ GKLG + TPK+IE L+ + KV G+ FS+ALT DG V+ WG G
Sbjct: 627 -VWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDIVKVRCGSQFSIALTKDGQVYTWGKG 685
Query: 453 LRSS---SISFHT--PVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQ- 506
H P L+ GL +++DV+ G +H LAL++ +EV++WGSN QC
Sbjct: 686 DNQRLGHGTEEHVRYPKLLEGLKGKKVIDVAAGSTHCLALTEDSEVHSWGSND--QCQHF 743
Query: 507 DNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAF-TPLCVDVRPHTF 565
D +P+ + GL+ + I G S A++ S S S P VDV P TF
Sbjct: 744 DTLRITKPEPAALPGLDTKHIVGIACGPAQSFAWS---SCSEWSIGLRVPFVVDVCPMTF 800
Query: 566 TLIREFLEQYSACFE-TGDYIP----FCSKVTHAQFIXXXXXXXXXXXXXXX-IGARSSS 619
+ L Q + + + D+ P C V + +G
Sbjct: 801 EQLDLLLRQVTEGMDGSSDWPPPQEKECMAVATLNLLRLQLHAAISHQVDPECLGLGLGG 860
Query: 620 VLGNETAALRHVLFKLV-DMETSPEIETLLTDCLAIGASLLLPPVVEQLDLLKTLL---- 674
+L N +L+ + L + +++ L G S+LLP E+ L LL
Sbjct: 861 ILLN---SLKQTVVTLASNAGVLNTVQSAAQAVLQSGWSVLLPTAEERARALSALLPSAV 917
Query: 675 -SQDHPLSNGQRMLLGVITSSL 695
+ +S G+R ++ ++ SL
Sbjct: 918 SGNEMNVSPGRRFMIDLLVGSL 939
|
|
| ZFIN|ZDB-GENE-070718-6 herc2 "hect domain and RLD 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 539 (194.8 bits), Expect = 2.3e-52, Sum P(4) = 2.3e-52
Identities = 167/532 (31%), Positives = 252/532 (47%)
Query: 189 KVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGWL 248
+V WG L + V G L +L + I + +L TG VY + +
Sbjct: 414 EVIGWGL-LGWKPYANVNGPIQCKALSNL--GVTQIVCSEKGFLILTITGA--VYTQNY- 467
Query: 249 GLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLS 308
+TT+ P+ I+ L+ + H L ++ GEV+SWG G+ G+LGHG+T
Sbjct: 468 --KSTTLAPMLVHALTSRKIMKLAAHPDGQ-HYLALSVNGEVFSWGCGDGGRLGHGDTTY 524
Query: 309 QRRPKLIM---GGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTP 365
P +I G GK+V ++ G ++SAA+T DG L+TWG G++GRLGHG + + TP
Sbjct: 525 LEEPTMISVFSGRPVGKQVVHIACGSTYSAAITADGELHTWGRGNYGRLGHGSSEDQTTP 584
Query: 366 TLVTELSDVGA--VSCG--ESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEA 421
LVT L + V+CG ++ TL ++++G VWS G G+ GKLG + TPK++E
Sbjct: 585 MLVTALKGLKVIDVACGSGDAQTLAVTENGQ-VWSWGDGDYGKLGRGGSDGCKTPKLVEK 643
Query: 422 LRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSS---SISFHT--PVLVTGLSSHQIVD 476
L+ + KVC G+ FSVALT DG V+ WG G H P L+ L ++VD
Sbjct: 644 LQDLDIVKVCCGSQFSVALTKDGQVYTWGKGDNQRLGHGTDEHVRYPKLLDSLQGKRVVD 703
Query: 477 VSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLF 536
+++G +H LAL++ EV++WGSN Q FSN QP + GL + I G
Sbjct: 704 IAVGSTHCLALTEEGEVHSWGSNDKLQHFDTLFSNK-KQPKALPGLNSKHIVGISCGPGQ 762
Query: 537 SIAYTVPPSNSALSSAF-TPLCVDVRPHTFTLIREFLEQYSACFE-TGDYIP----FCSK 590
S +++ S S S P VDV TF + L Q S + + D+ P C
Sbjct: 763 SFSWS---SCSEWSVGLRVPFVVDVCTMTFDQLDLLLRQVSEGMDGSSDWPPPQEKECMV 819
Query: 591 VTHAQFIXXXXXXXXXXXXX-XXIGARSSSVLGNETAALRHVLFKLVDME-TSPEIETLL 648
V + +G SVL N L+ + L ++
Sbjct: 820 VAALNLLRLQLHAAISNQVDPEELGLGLGSVLLNN---LKQTVVTLASNGGVLNTVQAAA 876
Query: 649 TDCLAIGASLLLPPVVEQLDLLKTLL-----SQDHPLSNGQRMLLGVITSSL 695
L G S+LLP E+ L +LL + + +S G+R ++ ++ SSL
Sbjct: 877 QTVLQSGWSVLLPTAEERARALSSLLPNAASANEMSVSPGRRFMIDLLVSSL 928
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1858 | |||
| cd12881 | 160 | cd12881, SPRY_HERC1, SPRY domain in HERC1 | 2e-70 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 1e-32 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 6e-27 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 5e-22 | |
| pfam00622 | 125 | pfam00622, SPRY, SPRY domain | 3e-19 | |
| smart00449 | 122 | smart00449, SPRY, Domain in SPla and the RYanodine | 9e-18 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 2e-15 | |
| cd11709 | 118 | cd11709, SPRY, SPRY domain | 2e-15 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 8e-15 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 7e-10 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 5e-09 | |
| cd12885 | 132 | cd12885, SPRY_RanBP_like, SPRY domain in Ran bindi | 2e-07 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 3e-07 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 8e-07 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 2e-06 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 3e-06 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 3e-06 | |
| cd12886 | 128 | cd12886, SPRY_like, SPRY domain-like in bacteria | 4e-06 | |
| cd12875 | 171 | cd12875, SPRY_SOCS_Fbox, SPRY domain in Fbxo45 and | 1e-05 | |
| cd12909 | 153 | cd12909, SPRY_RanBP9_10, SPRY domain in Ran bindin | 3e-05 | |
| cd12876 | 187 | cd12876, SPRY_SOCS3, SPRY domain in the suppressor | 2e-04 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 3e-04 | |
| cd12873 | 155 | cd12873, SPRY_DDX1, SPRY domain associated with DE | 0.002 |
| >gnl|CDD|240461 cd12881, SPRY_HERC1, SPRY domain in HERC1 | Back alignment and domain information |
|---|
Score = 232 bits (595), Expect = 2e-70
Identities = 97/162 (59%), Positives = 127/162 (78%), Gaps = 5/162 (3%)
Query: 1412 VSFDKEKC-VCCTVECGGQSLIHGPGTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCI 1470
SFD EK CC VE GG L+H G RGYG+A G++ G YQWKF +V +++G+EGTC+
Sbjct: 2 ASFDPEKSTKCCVVENGGT-LVHSSGGRGYGLAATGLSSGTYQWKFYLVKDNRGDEGTCV 60
Query: 1471 GVTRWPIRDYNHRTTGDMWLYRAYSGNVYHSGEQT-TMLPSFTQGDYITVVLDMDAQTLS 1529
GV+R P+ D+++RT+ DMWLYRAY+GN+YH+GE+ + P FTQGDYIT VLDM+ +TLS
Sbjct: 61 GVSRKPVTDFSYRTSSDMWLYRAYNGNLYHNGEKLSRLSPKFTQGDYITCVLDMEERTLS 120
Query: 1530 FGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNANGEKVKITDM 1571
FGKNGEEP +AF+D+D++ LYP V+FYS+N GEKVKI DM
Sbjct: 121 FGKNGEEPGVAFEDVDST-ELYPCVMFYSSN-PGEKVKIKDM 160
|
This SPRY domain is found in the HERC1, a large protein related to chromosome condensation regulator RCC1. It is widely expressed in many tissues, playing an important role in intracellular membrane trafficking in the cytoplasm as well as Golgi apparatus. HERC1 also interacts with tuberous sclerosis 2 (TSC2, tuberin), which suppresses cell growth, and results in the destabilization of TSC2. However, the biological function of HERC1 has yet to be defined. Length = 160 |
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 1e-32
Identities = 102/407 (25%), Positives = 164/407 (40%), Gaps = 53/407 (13%)
Query: 163 NTDIDSTSTPKLTYNIGDTDISVAH-------SKVYTWGCNLHHQI-LDEVRGKCSRPRL 214
N +S P I H + VY+WG N +++ L K RP+L
Sbjct: 36 NKRARKSSIPIPWIIRKVAQIINKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQL 95
Query: 215 QSLPS----NIRHIEAGQFCTFLLDSTGGLLVYGKGWLG------LANTTIQP------- 257
+I I G + LD G L +G G + Q
Sbjct: 96 NPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFD 155
Query: 258 ------LPKRVPLEAAIVS-LSVSK--CSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLS 308
P +VP ++ S L V K C + +T++G VYSWG G+LG G+ +
Sbjct: 156 DYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKN 215
Query: 309 QRRPKLIMGGLY--GKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPT 366
++ + L K + Q++AG H A+T +G +Y WG G+LG +
Sbjct: 216 SQKTSIQFTPLKVPKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVV 275
Query: 367 LVT---ELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGK----VTTPKVI 419
LV + ++ V+CG+ H+L L +DG +++ G G+LG G+ T P
Sbjct: 276 LVGDPFAIRNIKYVACGKDHSLALDEDGE-IYAWGVNIFGQLGAGSDGEIGALTTKPNYK 334
Query: 420 EALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRS-------SSISFHTPVLVTGLSSH 472
+ L + + AG S S+ L DG ++ +G G R +I TP ++
Sbjct: 335 QLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAI-- 392
Query: 473 QIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKV 519
++ V+ G H +A + VY+WG G G V P+ +
Sbjct: 393 KLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLI 439
|
Length = 476 |
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 6e-27
Identities = 85/300 (28%), Positives = 133/300 (44%), Gaps = 39/300 (13%)
Query: 272 SVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGN-TLSQRRPKLIMGGLYGKR-VTQVSA 329
V++ H + VYSWG +LG GN RP+L G K + +++
Sbjct: 52 KVAQIINKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIAC 111
Query: 330 GHSHSAAVTEDGLLYTWGEGDHGRLG---HGDLKSRH-------------TPTLVTELS- 372
G +HS + DG LY+WG+ D G LG H D+ ++ TP V S
Sbjct: 112 GGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSS 171
Query: 373 -----DVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLG---HEDTGKVTTPKVIEALRK 424
V ++CG +++L+ DG V+S G+ G+LG ++++ K + + K
Sbjct: 172 AKSHLRVVKLACGWEISVILTADGR-VYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPK 230
Query: 425 FRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSSHQIVD-V 477
+ ++ AG +ALT +G V+ WG LG +S VLV + + + V
Sbjct: 231 KAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSE-RLKLVVLVGDPFAIRNIKYV 289
Query: 478 SIGDSHVLALSQYNEVYAWGSNTMGQCGQD-NFSNPVD--QPSKVVGLEDVCVRQICAGS 534
+ G H LAL + E+YAWG N GQ G + +P+ L V + I AG
Sbjct: 290 ACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGE 349
|
Length = 476 |
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-22
Identities = 77/272 (28%), Positives = 117/272 (43%), Gaps = 25/272 (9%)
Query: 190 VYTWGCNLHHQILDEVRGKCSRPRLQSLP-----SNIRHIEAGQFCTFLLDSTGGLLVYG 244
VY+WG ++ + +Q P I + AG L + G + +G
Sbjct: 197 VYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIVQLAAGADHLIALTNEGKVYGWG 256
Query: 245 ---KGWLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKL 301
KG LG + L V AI ++ C + H L + +GE+Y+WGV G+L
Sbjct: 257 SNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQL 316
Query: 302 GHGN-------TLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRL 354
G G+ T +L L G + +SAG SHS + +DG LY +G GD G+L
Sbjct: 317 GAGSDGEIGALTTKPNYKQL----LSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQL 372
Query: 355 GHGDLKSRH--TPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHED-TG 411
G + + TPT ++ + V+CG H + + DG +V+S G G G LG+
Sbjct: 373 GIQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDDG-SVYSWGWGEHGNLGNGPKEA 431
Query: 412 KVTTPKVI-EALRKFR-VRKVCAGTSFSVALT 441
V P +I + L + G FSV
Sbjct: 432 DVLVPTLIRQPLLSGHNIILAGYGNQFSVIEE 463
|
Length = 476 |
| >gnl|CDD|216029 pfam00622, SPRY, SPRY domain | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 3e-19
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 1449 RGCYQWKFLIVNEHKGNEGTCIGVTRWPIRDYNHRTTGDM---WLYRAYSGNVYHSGEQT 1505
G + ++ + G +G ++ R GD W Y G+ YH+GE
Sbjct: 1 SGKHYFEVEVDTGGGG--HVRVGWATKSVKKPGFRLLGDDEGSWGYDGSGGSKYHNGESE 58
Query: 1506 TMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHL-AFQDLDTSAPLYPIVLFYSTNANGE 1564
F +GD I LD++ +SF KNG++ F++++ PLYP V + GE
Sbjct: 59 PYGLKFQEGDVIGCFLDLEEGEISFTKNGKDLGGYTFRNVEFGGPLYPAVSL---GSTGE 115
Query: 1565 KVKI 1568
V+
Sbjct: 116 AVQF 119
|
SPRY Domain is named from SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues. Length = 125 |
| >gnl|CDD|214669 smart00449, SPRY, Domain in SPla and the RYanodine Receptor | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 9e-18
Identities = 33/117 (28%), Positives = 46/117 (39%), Gaps = 9/117 (7%)
Query: 1449 RGCYQWKFLIVNEHKGNEGTCIGVTRWPIRDYNHRTTGD---MWLYRAYSGNVYHSGEQT 1505
G + ++ I +GV + G+ W Y G YH+
Sbjct: 1 SGRHYFEVEIG----DGGHWRVGVATKSVPRGYFALLGEDKGSWGYDGDGGKKYHNSTGP 56
Query: 1506 TMLPSFTQ-GDYITVVLDMDAQTLSFGKNGEE-PHLAFQDLDTSAPLYPIVLFYSTN 1560
+ GD I LD++A T+SF KNG+ LAF D+ S PLYP S N
Sbjct: 57 EYGLPLQEPGDVIGCFLDLEAGTISFYKNGKYLHGLAFFDVKFSGPLYPAFSLGSGN 113
|
Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues. Length = 122 |
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 2e-15
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 287 EGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAV 337
+G VY+WG E+G+LG G+ P+L+ GL G RV QV+ G SH+ A+
Sbjct: 1 DGRVYTWGRNEYGQLGLGDEEDVLVPQLVE-GLSGVRVVQVACGASHTVAL 50
|
Length = 50 |
| >gnl|CDD|240451 cd11709, SPRY, SPRY domain | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 2e-15
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 16/126 (12%)
Query: 1450 GCYQWKFLIVNEHKGNEGTCIGVTRWPIRDYNHRTTGD---MWLY---RAYSGNVYHSGE 1503
G + ++ + + + G +G R GD W + R G+ S
Sbjct: 1 GKWYYEVRVDSGNGGL--IQVGWATKSFSLDGERGVGDDEGSWGFDGSRLRKGHGGSSEP 58
Query: 1504 QTTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSA-PLYPIVLFYSTNAN 1562
+ GD + +LD+DA TLSF NG + +AF++L PLYP V S
Sbjct: 59 GGR---PWKSGDVVGCLLDLDAGTLSFSLNGVDLGVAFENLFRKGGPLYPAVSLGS---- 111
Query: 1563 GEKVKI 1568
G+ V I
Sbjct: 112 GQGVTI 117
|
SPRY domains, first identified in the SP1A kinase of Dictyostelium and rabbit Ryanodine receptor (hence the name), are homologous to B30.2. SPRY domains have been identified in at least 11 protein families, covering a wide range of functions, including regulation of cytokine signaling (SOCS), RNA metabolism (DDX1 and hnRNP), immunity to retroviruses (TRIM5alpha), intracellular calcium release (ryanodine receptors or RyR) and regulatory and developmental processes (HERC1 and Ash2L). B30.2 also contains residues in the N-terminus that form a distinct PRY domain structure; i.e. B30.2 domain consists of PRY and SPRY subdomains. B30.2 domains comprise the C-terminus of three protein families: BTNs (receptor glycoproteins of immunoglobulin superfamily); several TRIM proteins (composed of RING/B-box/coiled-coil or RBCC core); Stonutoxin (secreted poisonous protein of the stonefish Synanceia horrida). While SPRY domains are evolutionarily ancient, B30.2 domains are a more recent adaptation where the SPRY/PRY combination is a possible component of immune defense. Mutations found in the SPRY-containing proteins have shown to cause Mediterranean fever and Opitz syndrome. Length = 118 |
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 8e-15
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 340 DGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGA--VSCGESHTLVL 387
DG +YTWG ++G+LG GD + P LV LS V V+CG SHT+ L
Sbjct: 1 DGRVYTWGRNEYGQLGLGDEEDVLVPQLVEGLSGVRVVQVACGASHTVAL 50
|
Length = 50 |
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 7e-10
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 390 DGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVAL 440
DG V++ G G+LG D V P+++E L RV +V G S +VAL
Sbjct: 1 DGR-VYTWGRNEYGQLGLGDEEDVLVPQLVEGLSGVRVVQVACGASHTVAL 50
|
Length = 50 |
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 5e-09
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 492 EVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIA 539
VY WG N GQ G + + V P V GL V V Q+ G+ ++A
Sbjct: 3 RVYTWGRNEYGQLGLGDEED-VLVPQLVEGLSGVRVVQVACGASHTVA 49
|
Length = 50 |
| >gnl|CDD|240465 cd12885, SPRY_RanBP_like, SPRY domain in Ran binding proteins, SSH4, HECT E3 and SPRYD3 | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 7/111 (6%)
Query: 1461 EHKGNEGTC-IGVTRWPIRDYNH-RTTGDMWLYRAYSGNVYHSGEQTTM-LPSFTQGDYI 1517
G +G IG + Y G VY G + P F GD +
Sbjct: 23 LDLGEKGIVSIGFCTSGFPLNRMPGWEDGSYGYHGDDGRVYLGGGEGENYGPPFGTGDVV 82
Query: 1518 TVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNANGEKVKI 1568
++ + F KNGE AF+++ LYP V S G KV++
Sbjct: 83 GCGINFKTGEIFFTKNGELLGTAFENVV-KGRLYPTVGLGS---PGVKVRV 129
|
This family includes SPRY domains found in Ran binding proteins (RBP or RanBPM) 9 and 10, SSH4 (suppressor of SHR3 null mutation protein 4), SPRY domain-containing protein 3 (SPRYD3) as well as HECT, a C-terminal catalytic domain of a subclass of ubiquitin-protein ligase (E3). RanBP9 and RanBP10 act as androgen receptor (AR) coactivators. Both consist of the N-terminal proline- and glutamine-rich regions, the SPRY domain, and LisH-CTLH and CRA motifs. The SPRY domain in SSH4 may be involved in cargo recognition, either directly or by combination with other adaptors, possibly leading to a higher selectivity. SPRYD3 is highly expressed in most tissues in humans, possibly involved in important cellular processes. HECT E3 mediates the direct transfer of ubiquitin from E2 to substrate. Length = 132 |
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 3e-07
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 474 IVDVSIGDSHVLALSQYNEVYAWGSNTMGQ 503
+V ++ GD H LAL+ VY WG N+ GQ
Sbjct: 1 VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30
|
Length = 30 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 8e-07
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 23/165 (13%)
Query: 1058 HLVKQYLIRTPKSQKIVNLLSFL-----EGKRSLIFVKTYRDASRIISAVQDSNMMTIPM 1112
H +KQ + + +K L L +G + LIFV+T + A + ++ + +
Sbjct: 348 HNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCI 407
Query: 1113 SNNGT----SWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINH 1168
+ +W +LN F TGKS ++I T G D +V+ VI ++ P I
Sbjct: 408 HGDKKQEERTW-------VLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIED 460
Query: 1169 YVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207
YV +I AG + F P LA L+K+L + + VP
Sbjct: 461 YVHRIGRTGRAGAKGASYTFLTP-DKYRLARDLVKVLREAKQPVP 504
|
Length = 545 |
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-06
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 324 VTQVSAGHSHSAAVTEDGLLYTWGEGDHGR 353
V ++AG H+ A+T DG +Y WG+ +G+
Sbjct: 1 VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30
|
Length = 30 |
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 3e-06
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 443 DGLVFWWG------LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLAL 487
DG V+ WG LGL P LV GLS ++V V+ G SH +AL
Sbjct: 1 DGRVYTWGRNEYGQLGLGDEE-DVLVPQLVEGLSGVRVVQVACGASHTVAL 50
|
Length = 50 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 3e-06
Identities = 45/202 (22%), Positives = 75/202 (37%), Gaps = 41/202 (20%)
Query: 1035 DIEEESNIEVEDPIMKLVKP----SSVHLVKQYLIRTP----KSQKIVNLLSFLEGKRSL 1086
DI E + + DP+ V ++ +KQ+ + K + ++ LL + R +
Sbjct: 218 DIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVI 277
Query: 1087 IFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECL----------ELLNLFNTGKS 1136
+FV+T R + +++ V L L F G+
Sbjct: 278 VFVRTKRLVEELAESLRKRGF-------------KVAALHGDLPQEERDRALEKFKDGEL 324
Query: 1137 SLVIMTLSDFI--GNDFTNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVAD 1188
+++ T D G D +V VI Y+LPL YV +I AG K AI+F +
Sbjct: 325 RVLVAT--DVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEE 382
Query: 1189 IGLASSLIKLLEYSNKHVPTHP 1210
+ + K LE P
Sbjct: 383 VKKLKRIEKRLERKLPSAVLLP 404
|
Length = 513 |
| >gnl|CDD|240466 cd12886, SPRY_like, SPRY domain-like in bacteria | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 4e-06
Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 16/81 (19%)
Query: 1494 YSGNVY-HSGEQTTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQ---DLDTSA- 1548
SGN Y + FT GD I V LD+DA + F KNG +Q
Sbjct: 47 SSGNTYSGGSTVASFGAGFTAGDVIGVALDLDAGKIWFYKNG-----VWQGSGSPAPGTN 101
Query: 1549 ------PLYPIVLFYSTNANG 1563
+YP V S+
Sbjct: 102 PAFAGTQVYPAVTGGSSTGGS 122
|
This family contains SPRY-like domains that are found only in bacterial and are mostly uncharacterized. SPRY domains, first identified in the SP1A kinase of Dictyostelium and rabbit Ryanodine receptor (hence the name), are homologous to B30.2. SPRY domains have been identified in at least 11 eukaryotic protein families, covering a wide range of functions, including regulation of cytokine signaling (SOCS), RNA metabolism (DDX1 and hnRNP), immunity to retroviruses (TRIM5alpha), intracellular calcium release (ryanodine receptors or RyR) and regulatory and developmental processes (HERC1 and Ash2L). Length = 128 |
| >gnl|CDD|240455 cd12875, SPRY_SOCS_Fbox, SPRY domain in Fbxo45 and suppressors of cytokine signaling (SOCS) proteins | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 1489 WLYRAYSGNVYHSGEQT-TMLPSFTQG------DYITVVLDMDAQTLSFGKNGEEPHLAF 1541
W + + +YH G+ P+ + D + V+LDM+ TL+F NGE +AF
Sbjct: 86 WGWDLSTNKLYHDGKVVIGSYPAGSATENYSVPDRVLVILDMEDGTLAFEANGEYLGVAF 145
Query: 1542 QDLDTSAPLYPIV 1554
+ L LYP V
Sbjct: 146 RGL-PGKLLYPAV 157
|
This family consists of the SPRY domain-containing SOCS box protein family (SPSB1-4, also known as SSB-1 to -4) as well as F-box protein 45 (Fbxo45), a novel synaptic E3 and ubiquitin ligase. The SPSB protein is composed of a central SPRY protein interaction domain and a C-terminal SOCS box. SPSB1, SPSB2, and SPSB4 interact with prostate apoptosis response protein 4 (Par-4) and are negative regulators that recruit the ECS E3 ubiquitin ligase complex to polyubiquitinate inducible nitric-oxide synthase (iNOS), resulting in its proteasomal degradation. Fbxo45 is related to this family; it is located N-terminal to the SPRY domain, and known to induce the degradation of a synaptic vesicle-priming factor, Munc13-1, via the SPRY domain, thus playing an important role in the regulation of neurotransmission by modulating Munc13-1 at the synapse. Suppressor of cytokine signaling (SOCS) proteins negatively regulate signaling from JAK-associated cytokine receptor complexes, and play key roles in the regulation of immune homeostasis. Length = 171 |
| >gnl|CDD|240489 cd12909, SPRY_RanBP9_10, SPRY domain in Ran binding proteins 9 and 10 | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 41/145 (28%), Positives = 60/145 (41%), Gaps = 19/145 (13%)
Query: 1434 GPGTRGYGVANI----GITRGC--YQWKFLIVNEHKGNEGT-CIGVTRWPIRDYNHRTTG 1486
G G A + I C Y ++ I++ KG +G IG++ + N R G
Sbjct: 12 GSGKTDKDAAAVRANHPIPPQCGIYYFEVKILS--KGRDGYIGIGLST-KGVNLN-RLPG 67
Query: 1487 ---DMWLYRAYSGNVYH-SGEQTTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQ 1542
W Y G+ + SG P+FT GD I ++ T+ + KNG AF+
Sbjct: 68 WEKHSWGYHGDDGHSFSSSGTGKPYGPTFTTGDVIGCGINFVDNTIFYTKNGVNLGTAFR 127
Query: 1543 DLDTSAPLYPIVLFYSTNANGEKVK 1567
DL LYP V + GE V+
Sbjct: 128 DLPD-KNLYPTVGLRTP---GEHVE 148
|
This family includes SPRY domain in Ran binding protein (RBP or RanBPM) 9 and 10, and similar proteins. RanBP9 (also known as RanBPM), a binding partner of Ran, is a small Ras-like GTPase that exerts multiple functions via interactions with various proteins. RanBP9 and RanBP10 also act as androgen receptor (AR) coactivators. Both consist of the N-terminal proline- and glutamine-rich regions, the SPRY domain, and LisH-CTLH and CRA motifs. SPRY domain of RanBPM forms a complex with CD39, a prototypic member of the NTPDase family, thus down-regulating activity substantially. RanBP10 enhances the transcriptional activity of AR in a ligand-dependent manner and exhibits a protein expression pattern different from RanBPM in various cell lines. RanBP10 is highly expressed in AR-positive prostate cancer LNCaP cells, while RanBPM is abundant in WI-38 and MCF-7 cells. Length = 153 |
| >gnl|CDD|240456 cd12876, SPRY_SOCS3, SPRY domain in the suppressor of cytokine signaling 3 (SOCS3) family | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 1494 YSGNVYHSGEQTTML--PSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSA-PL 1550
Y G ++H+G ++ QG I V LDM + TL+F KNG+ +AF L L
Sbjct: 95 YKGLLWHNG-ESRPYTEKFGNQGTIIGVHLDMWSGTLTFYKNGKPLGVAFTGLQNDGKKL 153
Query: 1551 YPIVLFYSTNANGEKVKITDMTVCET 1576
YP+V ST A ++M +
Sbjct: 154 YPMVS--STAAK------SEMKLINA 171
|
The SPRY domain-containing SOCS box protein family (SPSB1-4, also known as SSB-1 to -4) is composed of a central SPRY protein interaction domain and a C-terminal SOCS box. All four SPSB proteins interact with c-Met, the hepatocyte growth factor receptor, but SOCS3 regulates cellular response to a variety of cytokines such as leukemia inhibitory factor (LIF) and interleukin 6. SOCS3, along with SOCS1, are expressed by immune cells and cells of the central nervous system (CNS) and have the potential to impact immune processes within the CNS. In non-small cell lung cancer (NSCLC), SOCS3 is silenced and proline-rich tyrosine kinase 2 (Pyk2) is over-expressed; it has been suggested that SOCS3 could be an effective way to prevent the progression of NSCLC due to its role in regulating Pyk2 expression. Length = 187 |
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 3e-04
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 376 AVSCGESHTLVLSQDGHTVWSMGSGNLG 403
+++ G+ HTL L+ DG TV+ G + G
Sbjct: 3 SIAAGDYHTLALTSDG-TVYCWGDNSYG 29
|
Length = 30 |
| >gnl|CDD|240453 cd12873, SPRY_DDX1, SPRY domain associated with DEAD box gene DDX1 | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 1511 FTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSA--PLYPIV 1554
F +GD I +LD+D T+SF KNG++ +AF L+P V
Sbjct: 95 FGKGDVIGCLLDLDNGTISFSKNGKDLGVAFDIPPKLRNQALFPAV 140
|
This SPRY domain is associated with the DEAD box gene, DDX1, an RNA-dependent ATPase involved in HIV-1 Rev function and virus replication. It is suggested that DDX1 acts as a cellular cofactor by promoting oligomerization of Rev on the Rev response element (RRE). DDX1 RNA is overexpressed in breast cancer, data showing a strong and independent association between poor prognosis and deregulation of the DEAD box protein DDX1, thus potentially serving as an effective prognostic biomarker for early recurrence in primary breast cancer. DDX1 also interacts with RelA and enhances nuclear factor kappaB-mediated transcription. DEAD-box proteins are associated with all levels of RNA metabolism and function, and have been implicated in translation initiation, transcription, RNA splicing, ribosome assembly, RNA transport, and RNA decay. Length = 155 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1858 | |||
| KOG0331|consensus | 519 | 100.0 | ||
| KOG0330|consensus | 476 | 100.0 | ||
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0333|consensus | 673 | 100.0 | ||
| KOG0328|consensus | 400 | 100.0 | ||
| KOG0336|consensus | 629 | 100.0 | ||
| COG5184 | 476 | ATS1 Alpha-tubulin suppressor and related RCC1 dom | 100.0 | |
| KOG0342|consensus | 543 | 100.0 | ||
| KOG0338|consensus | 691 | 100.0 | ||
| KOG0335|consensus | 482 | 100.0 | ||
| KOG0341|consensus | 610 | 100.0 | ||
| KOG0340|consensus | 442 | 100.0 | ||
| KOG0343|consensus | 758 | 100.0 | ||
| COG5184 | 476 | ATS1 Alpha-tubulin suppressor and related RCC1 dom | 100.0 | |
| KOG0345|consensus | 567 | 100.0 | ||
| KOG0326|consensus | 459 | 100.0 | ||
| KOG0339|consensus | 731 | 100.0 | ||
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| KOG1427|consensus | 443 | 100.0 | ||
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| KOG0348|consensus | 708 | 100.0 | ||
| KOG0327|consensus | 397 | 100.0 | ||
| KOG0334|consensus | 997 | 100.0 | ||
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| KOG0337|consensus | 529 | 100.0 | ||
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.98 | |
| KOG0332|consensus | 477 | 99.97 | ||
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.97 | |
| KOG0347|consensus | 731 | 99.97 | ||
| KOG1427|consensus | 443 | 99.97 | ||
| KOG0346|consensus | 569 | 99.96 | ||
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.96 | |
| KOG4284|consensus | 980 | 99.96 | ||
| KOG4367|consensus | 699 | 99.96 | ||
| KOG0344|consensus | 593 | 99.95 | ||
| PTZ00424 | 401 | helicase 45; Provisional | 99.94 | |
| KOG0329|consensus | 387 | 99.92 | ||
| KOG0783|consensus | 1267 | 99.91 | ||
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.91 | |
| KOG3953|consensus | 242 | 99.9 | ||
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.9 | |
| KOG0350|consensus | 620 | 99.9 | ||
| KOG0783|consensus | 1267 | 99.89 | ||
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.86 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.86 | |
| KOG0349|consensus | 725 | 99.86 | ||
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.85 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.83 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.83 | |
| KOG1428|consensus | 3738 | 99.82 | ||
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.82 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.81 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.8 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.8 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.78 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.77 | |
| KOG1428|consensus | 3738 | 99.75 | ||
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.75 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.75 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.74 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.71 | |
| PF00622 | 124 | SPRY: SPRY domain; InterPro: IPR003877 The SPRY do | 99.67 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.67 | |
| smart00449 | 122 | SPRY Domain in SPla and the RYanodine Receptor. Do | 99.67 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.65 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.64 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.62 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.62 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.6 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.56 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.54 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.51 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.5 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.49 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.46 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.44 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.43 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.41 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.37 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.36 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.28 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.25 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.22 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.21 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.2 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.18 | |
| KOG0354|consensus | 746 | 99.12 | ||
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.11 | |
| KOG0351|consensus | 941 | 99.08 | ||
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.02 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.01 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 98.96 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 98.94 | |
| KOG0941|consensus | 850 | 98.9 | ||
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 98.89 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 98.84 | |
| KOG0352|consensus | 641 | 98.8 | ||
| KOG2626|consensus | 544 | 98.78 | ||
| PRK09694 | 878 | helicase Cas3; Provisional | 98.77 | |
| PF00415 | 51 | RCC1: Regulator of chromosome condensation (RCC1) | 98.71 | |
| PF00415 | 51 | RCC1: Regulator of chromosome condensation (RCC1) | 98.71 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 98.57 | |
| KOG0941|consensus | 850 | 98.57 | ||
| PF13540 | 30 | RCC1_2: Regulator of chromosome condensation (RCC1 | 98.51 | |
| PF13540 | 30 | RCC1_2: Regulator of chromosome condensation (RCC1 | 98.47 | |
| KOG0349|consensus | 725 | 98.46 | ||
| KOG4030|consensus | 197 | 98.39 | ||
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 98.38 | |
| KOG0353|consensus | 695 | 98.32 | ||
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 98.23 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 98.19 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 98.15 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 98.12 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 97.92 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 97.76 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 97.75 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 97.65 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 97.43 | |
| KOG2243|consensus | 5019 | 97.42 | ||
| KOG1477|consensus | 469 | 97.36 | ||
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 97.17 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 97.07 | |
| KOG0391|consensus | 1958 | 97.0 | ||
| KOG1002|consensus | 791 | 96.75 | ||
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 96.75 | |
| KOG0385|consensus | 971 | 96.72 | ||
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 96.69 | |
| KOG0384|consensus | 1373 | 96.62 | ||
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 96.45 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 96.43 | |
| KOG0389|consensus | 941 | 96.22 | ||
| KOG0953|consensus | 700 | 96.2 | ||
| KOG0392|consensus | 1549 | 96.19 | ||
| KOG0390|consensus | 776 | 96.1 | ||
| KOG4150|consensus | 1034 | 96.09 | ||
| KOG0387|consensus | 923 | 95.95 | ||
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 95.89 | |
| KOG0952|consensus | 1230 | 95.83 | ||
| KOG1000|consensus | 689 | 95.79 | ||
| COG1204 | 766 | Superfamily II helicase [General function predicti | 95.48 | |
| KOG0922|consensus | 674 | 95.28 | ||
| KOG0951|consensus | 1674 | 95.23 | ||
| KOG1477|consensus | 469 | 95.21 | ||
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 94.27 | |
| KOG0950|consensus | 1008 | 93.75 | ||
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 93.42 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 93.29 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 92.14 | |
| KOG3669|consensus | 705 | 91.72 | ||
| KOG4439|consensus | 901 | 91.37 | ||
| KOG0948|consensus | 1041 | 91.19 | ||
| KOG0388|consensus | 1185 | 90.98 | ||
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 90.92 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 90.63 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 90.6 | |
| KOG0947|consensus | 1248 | 89.75 | ||
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 89.54 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 89.0 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 88.92 | |
| KOG3669|consensus | 705 | 88.82 | ||
| KOG2340|consensus | 698 | 88.3 | ||
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 87.95 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 87.53 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 87.32 | |
| KOG0924|consensus | 1042 | 87.09 | ||
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 86.93 | |
| KOG0923|consensus | 902 | 86.79 | ||
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 86.45 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 86.38 | |
| KOG0920|consensus | 924 | 85.86 | ||
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 85.03 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 83.87 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 83.77 | |
| PF13765 | 49 | PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2V | 82.3 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 81.59 | |
| KOG0943|consensus | 3015 | 80.5 | ||
| KOG0386|consensus | 1157 | 80.39 |
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=493.48 Aligned_cols=311 Identities=20% Similarity=0.288 Sum_probs=279.4
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.|.+++|++.+|.+..... .+ .+..-+++++||||||.||.+.+..+..+..+ ++.+++||+++
T Consensus 142 TLay~lP~i~~l~~~~~~~---~~--~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~-----------~~~cvyGG~~~ 205 (519)
T KOG0331|consen 142 TLAYLLPAIVHLNNEQGKL---SR--GDGPIVLVLAPTRELAVQVQAEAREFGKSLRL-----------RSTCVYGGAPK 205 (519)
T ss_pred hhhhhhHHHHHHHhccccc---cC--CCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCc-----------cEEEEeCCCCc
Confidence 5678999999999852222 11 24556799999999999999999988887774 88999999999
Q ss_pred chhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHh-HHH
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVV-NKF 996 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~L-pk~ 996 (1858)
++|..+++++++++++||+|++| ..+..+++...++||||||| |++|||+++ ++.|+..+ +..
T Consensus 206 ~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADr----------MldmGFe~q----I~~Il~~i~~~~ 271 (519)
T KOG0331|consen 206 GPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADR----------MLDMGFEPQ----IRKILSQIPRPD 271 (519)
T ss_pred cHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHh----------hhccccHHH----HHHHHHhcCCCc
Confidence 99999999999999999999998 66677788899999999999 999999999 99999999 678
Q ss_pred HHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccC----CcccEEEEEEECChhhH
Q psy15269 997 RAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPS----SVHLVKQYLIRTPKSQK 1072 (1858)
Q Consensus 997 RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~----~~~~I~Q~~~~v~~~~K 1072 (1858)
|||+|| |||+|.+++.+|.+||++|+.|.+... +..+|.|.+..|++..|
T Consensus 272 rQtlm~--------------------------saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K 325 (519)
T KOG0331|consen 272 RQTLMF--------------------------SATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAK 325 (519)
T ss_pred ccEEEE--------------------------eeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHH
Confidence 899999 999999999999999999999988643 34459999999998888
Q ss_pred HHHHHHhhcC------CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccc
Q psy15269 1073 IVNLLSFLEG------KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDF 1146 (1858)
Q Consensus 1073 l~~Ll~lL~~------~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAA 1146 (1858)
...|..+|.. +|+||||+||+.|++|+..|+..++++.+|||+++ |.||..+|+.||+|+..|||||||||
T Consensus 326 ~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~s---Q~eR~~~L~~FreG~~~vLVATdVAa 402 (519)
T KOG0331|consen 326 LRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKS---QSERDWVLKGFREGKSPVLVATDVAA 402 (519)
T ss_pred HHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeeccccc---HHHHHHHHHhcccCCcceEEEccccc
Confidence 7777766643 69999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cCCCCCCcceEEEcCCCCChhhhhhhc-----cCcc-eEEEEecCcccHHHHHHHHHHHhhcCCCCCCCc
Q psy15269 1147 IGNDFTNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNKHVPTHP 1210 (1858)
Q Consensus 1147 RGLDIp~V~~VINyDlP~~~e~YIHRI-----ag~~-~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~ 1210 (1858)
|||||++|++|||||+|.++|+||||+ |+++ +|++|+++ .+......+.+.++...+.+|+.+
T Consensus 403 RGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~-~~~~~a~~l~~~l~e~~q~v~~~l 471 (519)
T KOG0331|consen 403 RGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTS-DNAKLARELIKVLREAGQTVPPDL 471 (519)
T ss_pred ccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeH-HHHHHHHHHHHHHHHccCCCChHH
Confidence 999999999999999999999999999 2333 99999998 999999999999999999999733
|
|
| >KOG0330|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=424.58 Aligned_cols=302 Identities=19% Similarity=0.239 Sum_probs=270.2
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.+.+++|+|++|=+-+++ -.+.++.|+|+||.||+.+...+.++..+ +..++.||+.|
T Consensus 112 T~afaLPIl~~LL~~p~~-----------~~~lVLtPtRELA~QI~e~fe~Lg~~igl-----------r~~~lvGG~~m 169 (476)
T KOG0330|consen 112 TGAFALPILQRLLQEPKL-----------FFALVLTPTRELAQQIAEQFEALGSGIGL-----------RVAVLVGGMDM 169 (476)
T ss_pred hhhhHHHHHHHHHcCCCC-----------ceEEEecCcHHHHHHHHHHHHHhccccCe-----------EEEEEecCchH
Confidence 455788888877653333 35689999999999999999999999998 55888999999
Q ss_pred chhhhhhhhhcccccccccccccCcc---ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHH
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILMSPN---YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKF 996 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~~~~---~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~ 996 (1858)
..|..++.+-++++++||+++.++.+ --+.....++|+||||| +++|.|.++ +..|++.+|+.
T Consensus 170 ~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADr----------lLd~dF~~~----ld~ILk~ip~e 235 (476)
T KOG0330|consen 170 MLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADR----------LLDMDFEEE----LDYILKVIPRE 235 (476)
T ss_pred HHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHh----------hhhhhhHHH----HHHHHHhcCcc
Confidence 99999999999999999999998444 22333455666777776 999999999 99999999999
Q ss_pred HHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccC--CcccEEEEEEECChhhHHH
Q psy15269 997 RAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPS--SVHLVKQYLIRTPKSQKIV 1074 (1858)
Q Consensus 997 RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~--~~~~I~Q~~~~v~~~~Kl~ 1074 (1858)
|||+|| |||||+.|+++-+.-+++|+.|.+... ....++|+|++++..+|-.
T Consensus 236 rqt~Lf--------------------------sATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~ 289 (476)
T KOG0330|consen 236 RQTFLF--------------------------SATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDT 289 (476)
T ss_pred ceEEEE--------------------------EeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccch
Confidence 999999 999999999999999999999988654 4445999999999999999
Q ss_pred HHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCC
Q psy15269 1075 NLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDF 1151 (1858)
Q Consensus 1075 ~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDI 1151 (1858)
.|+++++. ...||||+|+.++++++-.|+..|+.+..|||+|+ |..|..++++|++|..+||||||||+|||||
T Consensus 290 yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqms---q~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDi 366 (476)
T KOG0330|consen 290 YLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMS---QSKRLGALNKFKAGARSILVCTDVASRGLDI 366 (476)
T ss_pred hHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhh---HHHHHHHHHHHhccCCcEEEecchhcccCCC
Confidence 99999875 78999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCcceEEEcCCCCChhhhhhhc-----cCcc-eEEEEecCcccHHHHHHHHHHHhhcCCCCC
Q psy15269 1152 TNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207 (1858)
Q Consensus 1152 p~V~~VINyDlP~~~e~YIHRI-----ag~~-~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip 1207 (1858)
|.|++|||||+|.+..+||||+ ||+. .+|+||+. .|...+++||..++++..+.+
T Consensus 367 p~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtq-yDve~~qrIE~~~gkkl~~~~ 427 (476)
T KOG0330|consen 367 PHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQ-YDVELVQRIEHALGKKLPEYK 427 (476)
T ss_pred CCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEeh-hhhHHHHHHHHHHhcCCCccC
Confidence 9999999999999999999999 4444 99999999 999999999999999887644
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=452.25 Aligned_cols=303 Identities=21% Similarity=0.253 Sum_probs=270.4
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.+.+++|+|+.|++. ... .... +.++.|||+||.||...+..+..+.+ .++...++||..+
T Consensus 80 T~Af~lP~l~~l~~~-~~~-------~~~~-aLil~PTRELA~Qi~~~~~~~~~~~~----------~~~~~~i~GG~~~ 140 (513)
T COG0513 80 TAAFLLPLLQKILKS-VER-------KYVS-ALILAPTRELAVQIAEELRKLGKNLG----------GLRVAVVYGGVSI 140 (513)
T ss_pred HHHHHHHHHHHHhcc-ccc-------CCCc-eEEECCCHHHHHHHHHHHHHHHhhcC----------CccEEEEECCCCH
Confidence 667899999998865 111 0111 79999999999999999999988874 2357889999999
Q ss_pred chhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHH
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFR 997 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~R 997 (1858)
..|...++++++++++||+|++| ..+..+......+||||||| |++|||.++ ++.|++.+|+.|
T Consensus 141 ~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr----------mLd~Gf~~~----i~~I~~~~p~~~ 206 (513)
T COG0513 141 RKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR----------MLDMGFIDD----IEKILKALPPDR 206 (513)
T ss_pred HHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh----------hhcCCCHHH----HHHHHHhCCccc
Confidence 99999999999999999999998 44455777788889999988 999999999 999999999999
Q ss_pred HHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCC----cccEEEEEEECChhh-H
Q psy15269 998 AELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSS----VHLVKQYLIRTPKSQ-K 1072 (1858)
Q Consensus 998 QtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~----~~~I~Q~~~~v~~~~-K 1072 (1858)
|+++| |||+|+.|+++++.+|+||+.|.+..+. ...|+|+|+.++..+ |
T Consensus 207 qtllf--------------------------SAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k 260 (513)
T COG0513 207 QTLLF--------------------------SATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEK 260 (513)
T ss_pred EEEEE--------------------------ecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHH
Confidence 99999 9999999999999999999999887443 345999999999776 9
Q ss_pred HHHHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCC
Q psy15269 1073 IVNLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGN 1149 (1858)
Q Consensus 1073 l~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGL 1149 (1858)
+..|.++++. .++||||+|++.|++|+..|+..|+++..|||+|+ |++|.+++++|++|+++||||||||||||
T Consensus 261 ~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~---q~~R~~~l~~F~~g~~~vLVaTDvaaRGi 337 (513)
T COG0513 261 LELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLP---QEERDRALEKFKDGELRVLVATDVAARGL 337 (513)
T ss_pred HHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCC---HHHHHHHHHHHHcCCCCEEEEechhhccC
Confidence 9999999975 67999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCCcceEEEcCCCCChhhhhhhc-----cCcc-eEEEEecCcccHHHHHHHHHHHhhcCC
Q psy15269 1150 DFTNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNK 1204 (1858)
Q Consensus 1150 DIp~V~~VINyDlP~~~e~YIHRI-----ag~~-~aitfvt~~~e~~~l~~Ie~~l~~~~q 1204 (1858)
||++|+||||||+|.++++||||| ||++ .|++|+++..|...+..|++.++....
T Consensus 338 Di~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 338 DIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred CccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999 3333 999999984499999999999877633
|
|
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=418.09 Aligned_cols=358 Identities=18% Similarity=0.218 Sum_probs=288.4
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHhhhhhhhhHHHHHHHHhhccccccCccHHHHHHHHHHHHhhhccccccccccccC
Q psy15269 789 VIDILERSIAWVNQGKDIEVLNELLYNSLAGKILFSIVHSLLINIHRSMYPTLRYFLAILPLLDSLNQLLPMQGNYTETN 868 (1858)
Q Consensus 789 ~~~~l~~a~~l~~~~~~~~~l~~vl~~~~~g~ll~~~~~~l~ll~~~~~~~~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~ 868 (1858)
+.-|-++|+=+..|.+++..+.+ ..+|+- +.+++|||..+-++..+.+...+. .+
T Consensus 268 ptpIqR~aipl~lQ~rD~igvaE----TgsGkt-------------------aaf~ipLl~~IsslP~~~~~en~~--~g 322 (673)
T KOG0333|consen 268 PTPIQRQAIPLGLQNRDPIGVAE----TGSGKT-------------------AAFLIPLLIWISSLPPMARLENNI--EG 322 (673)
T ss_pred CchHHHhhccchhccCCeeeEEe----ccCCcc-------------------ccchhhHHHHHHcCCCcchhhhcc--cC
Confidence 55667888888888877655554 233332 236677777777766555433333 45
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCcc--c
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPN--Y 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~--~ 946 (1858)
....++.|+|+||+||-.....++++.-. +...+.||.....|-.+++.|++++++||++|+|..+ +
T Consensus 323 pyaiilaptReLaqqIeeEt~kf~~~lg~-----------r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~ 391 (673)
T KOG0333|consen 323 PYAIILAPTRELAQQIEEETNKFGKPLGI-----------RTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRY 391 (673)
T ss_pred ceeeeechHHHHHHHHHHHHHHhcccccc-----------eEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHH
Confidence 56789999999999999888877765543 6678899999999999999999999999999998444 4
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccc------cccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDD------NNVSMGVT 1020 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~------~~~s~~~~ 1020 (1858)
.-.....+++||+||| |.||||+++ +..|++.+|..- ..+.+...+ .+.+- ..
T Consensus 392 lvl~qctyvvldeadr----------miDmgfE~d----v~~iL~~mPssn------~k~~tde~~~~~~~~~~~~~-~k 450 (673)
T KOG0333|consen 392 LVLNQCTYVVLDEADR----------MIDMGFEPD----VQKILEQMPSSN------AKPDTDEKEGEERVRKNFSS-SK 450 (673)
T ss_pred HHhccCceEeccchhh----------hhcccccHH----HHHHHHhCCccc------cCCCccchhhHHHHHhhccc-cc
Confidence 4445566778888877 999999999 999999988421 011111100 11122 22
Q ss_pred ccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcc--cEEEEEEECChhhHHHHHHHhhcC---CcEEEEecChHHH
Q psy15269 1021 STQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVH--LVKQYLIRTPKSQKIVNLLSFLEG---KRSLIFVKTYRDA 1095 (1858)
Q Consensus 1021 ~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~--~I~Q~~~~v~~~~Kl~~Ll~lL~~---~k~IIFvnTk~~a 1095 (1858)
.+.++.|++||||+.+++||+.||.+|+.+.++....+ .++|.++.++..+|...|..++.. .++|||+|||+.|
T Consensus 451 ~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~ 530 (673)
T KOG0333|consen 451 KYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGA 530 (673)
T ss_pred ceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhH
Confidence 66788888999999999999999999999998755443 499999999999999999999875 7899999999999
Q ss_pred HHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc--
Q psy15269 1096 SRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-- 1173 (1858)
Q Consensus 1096 d~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-- 1173 (1858)
+.|++.|.+.||.+..|||+.+ |+||..+|..||+|...||||||||+||||||||+||||||++.++++|+|||
T Consensus 531 d~lAk~LeK~g~~~~tlHg~k~---qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGR 607 (673)
T KOG0333|consen 531 DALAKILEKAGYKVTTLHGGKS---QEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGR 607 (673)
T ss_pred HHHHHHHhhccceEEEeeCCcc---HHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhcc
Confidence 9999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ---cCcc-eEEEEecCcccHHHHHHHHHHHhh-cCCCCC
Q psy15269 1174 ---AGHK-EAIAFYDPVADIGLASSLIKLLEY-SNKHVP 1207 (1858)
Q Consensus 1174 ---ag~~-~aitfvt~~~e~~~l~~Ie~~l~~-~~q~ip 1207 (1858)
||+. +||+|+++ +|...+.+|.+.+.. .....|
T Consensus 608 TgRAGk~GtaiSflt~-~dt~v~ydLkq~l~es~~s~~P 645 (673)
T KOG0333|consen 608 TGRAGKSGTAISFLTP-ADTAVFYDLKQALRESVKSHCP 645 (673)
T ss_pred ccccccCceeEEEecc-chhHHHHHHHHHHHHhhhccCC
Confidence 5554 99999999 777777777777775 334444
|
|
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-44 Score=393.95 Aligned_cols=287 Identities=19% Similarity=0.221 Sum_probs=260.6
Q ss_pred cCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cc
Q psy15269 867 TNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SP 944 (1858)
Q Consensus 867 ~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~ 944 (1858)
.+..+.++.|+|+||.||+.....+.-.+.++- -.-.||-..+.+++.++-|+..+..||+|++| ..
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~-----------hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr 162 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDYMNVQC-----------HACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR 162 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhcccccceE-----------EEEecCCccchhhhhhcccceEeeCCCchHHHHHHh
Confidence 334579999999999999999988877777744 33479999999999999999999999999997 44
Q ss_pred cccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccc
Q psy15269 945 NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQH 1024 (1858)
Q Consensus 945 ~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~ 1024 (1858)
+-.....+.-.||||||+ |+..||..| +..||+.+|+--|-.++
T Consensus 163 ~~L~tr~vkmlVLDEaDe----------mL~kgfk~Q----iydiyr~lp~~~Qvv~~---------------------- 206 (400)
T KOG0328|consen 163 RSLRTRAVKMLVLDEADE----------MLNKGFKEQ----IYDIYRYLPPGAQVVLV---------------------- 206 (400)
T ss_pred ccccccceeEEEeccHHH----------HHHhhHHHH----HHHHHHhCCCCceEEEE----------------------
Confidence 444444567788999998 888899999 99999999999999999
Q ss_pred ccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCccc--EEEEEEECChhh-HHHHHHHhhcC---CcEEEEecChHHHHHH
Q psy15269 1025 NSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHL--VKQYLIRTPKSQ-KIVNLLSFLEG---KRSLIFVKTYRDASRI 1098 (1858)
Q Consensus 1025 ~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~--I~Q~~~~v~~~~-Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L 1098 (1858)
|||+|.+|.++.++||.||++|.++..+.+. |+|+|+.+++++ |+..|+++... .++|||||||+.+++|
T Consensus 207 ----SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwL 282 (400)
T KOG0328|consen 207 ----SATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWL 282 (400)
T ss_pred ----eccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHH
Confidence 9999999999999999999999998776664 999999998877 88888877654 8999999999999999
Q ss_pred HHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----
Q psy15269 1099 ISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI----- 1173 (1858)
Q Consensus 1099 ~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI----- 1173 (1858)
.+.|++..+.++++||+|. |++|++++++||+|+.+|||+|||.|||||+|.|++|||||+|.+.|.|||||
T Consensus 283 tekm~~~nftVssmHGDm~---qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGR 359 (400)
T KOG0328|consen 283 TEKMREANFTVSSMHGDME---QKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR 359 (400)
T ss_pred HHHHHhhCceeeeccCCcc---hhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccc
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred -cCcceEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1174 -AGHKEAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1174 -ag~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
|++|.||.|+.. +|.+.+++|++++.....++|-
T Consensus 360 FGRkGvainFVk~-~d~~~lrdieq~yst~i~emp~ 394 (400)
T KOG0328|consen 360 FGRKGVAINFVKS-DDLRILRDIEQYYSTQIDEMPM 394 (400)
T ss_pred cCCcceEEEEecH-HHHHHHHHHHHHHhhhcccccc
Confidence 556699999998 9999999999999999999885
|
|
| >KOG0336|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=403.13 Aligned_cols=283 Identities=20% Similarity=0.268 Sum_probs=256.2
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+..+.|+|+||++|-.... ++..+=+++.+|+||-.-..|+.|++++++++++||+++.| ..+..
T Consensus 296 ~~lvl~ptreLalqie~e~~------------kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i 363 (629)
T KOG0336|consen 296 GVLVLTPTRELALQIEGEVK------------KYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVI 363 (629)
T ss_pred ceEEEeccHHHHHHHHhHHh------------HhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCee
Confidence 35889999999999954432 23445567899999999999999999999999999999997 55577
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccC
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNST 1027 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~ 1027 (1858)
++.+.-++||||||| |+||||+++ |+.|+--+...|||.|-
T Consensus 364 ~l~siTYlVlDEADr----------MLDMgFEpq----IrkilldiRPDRqtvmT------------------------- 404 (629)
T KOG0336|consen 364 NLASITYLVLDEADR----------MLDMGFEPQ----IRKILLDIRPDRQTVMT------------------------- 404 (629)
T ss_pred eeeeeEEEEecchhh----------hhcccccHH----HHHHhhhcCCcceeeee-------------------------
Confidence 778888999999999 999999999 99999999999999998
Q ss_pred CCCCCcHhHHHHHHHhcCCCEEEEEccCCc---ccEEEEEEECChhhHHHHHHHhhcC----CcEEEEecChHHHHHHHH
Q psy15269 1028 DSLFSWGDIEEESNIEVEDPIMKLVKPSSV---HLVKQYLIRTPKSQKIVNLLSFLEG----KRSLIFVKTYRDASRIIS 1100 (1858)
Q Consensus 1028 eSAT~p~~I~~la~~~L~dpv~I~v~~~~~---~~I~Q~~~~v~~~~Kl~~Ll~lL~~----~k~IIFvnTk~~ad~L~~ 1100 (1858)
|||+|+.|++||..||++|+.+-++.-.. ..++|.++.....+|++.+-.++.. .|+||||..|..||.|..
T Consensus 405 -SATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSS 483 (629)
T KOG0336|consen 405 -SATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSS 483 (629)
T ss_pred -cccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccc
Confidence 99999999999999999999998765443 3489999888888998877777653 899999999999999999
Q ss_pred HHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cC
Q psy15269 1101 AVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AG 1175 (1858)
Q Consensus 1101 ~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag 1175 (1858)
-|.-.|+.+.+|||+.. |.+|+.+++.||+|+++||||||+|+||||+++|+||+|||+|.++|.||||| ||
T Consensus 484 d~~l~gi~~q~lHG~r~---Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaG 560 (629)
T KOG0336|consen 484 DFCLKGISSQSLHGNRE---QSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAG 560 (629)
T ss_pred hhhhcccchhhccCChh---hhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCC
Confidence 99999999999999998 99999999999999999999999999999999999999999999999999999 44
Q ss_pred cc-eEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1176 HK-EAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1176 ~~-~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
+. ++++|++. +|..++..|.+.+.++.|++|+
T Consensus 561 r~G~sis~lt~-~D~~~a~eLI~ILe~aeQevPd 593 (629)
T KOG0336|consen 561 RTGTSISFLTR-NDWSMAEELIQILERAEQEVPD 593 (629)
T ss_pred CCcceEEEEeh-hhHHHHHHHHHHHHHhhhhCcH
Confidence 33 99999998 9999999999999999999997
|
|
| >COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=394.74 Aligned_cols=352 Identities=27% Similarity=0.472 Sum_probs=281.4
Q ss_pred ceeeCCeEEEEcCCCCCCCCcCCCCC-cccccccCCC----CCeEEEEEcCCEEEEEecCCcEEEEccc---ccCCCC--
Q psy15269 183 ISVAHSKVYTWGCNLHHQILDEVRGK-CSRPRLQSLP----SNIRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLAN-- 252 (1858)
Q Consensus 183 ~a~s~g~Vy~WGsN~~GQLG~g~~~~-~~~P~~v~~~----~~IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg~-- 252 (1858)
..+.-..||+||+|..+|||.|..+. ...|+..+.. ..|++++||..|+++|++||+||+||.| ++|...
T Consensus 63 ~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~ 142 (476)
T COG5184 63 LLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHK 142 (476)
T ss_pred hhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccccccccc
Confidence 33456789999999999999998765 4788888776 4699999999999999999999999998 444222
Q ss_pred --------------CCCCCCceeecCc---cCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCccc------
Q psy15269 253 --------------TTIQPLPKRVPLE---AAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQ------ 309 (1858)
Q Consensus 253 --------------~~~~~~P~~V~~~---~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~------ 309 (1858)
.....+|.+++.. ..-.+|++++||++++++++++|+||+||.+..+.++.+...+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~ 222 (476)
T COG5184 143 DICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQ 222 (476)
T ss_pred ccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceee
Confidence 1124577777762 11235788889999999999999999999999999888854432
Q ss_pred ccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccC---CCceEEeecCceEEE
Q psy15269 310 RRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTEL---SDVGAVSCGESHTLV 386 (1858)
Q Consensus 310 ~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l---~~I~~IAcG~~HTla 386 (1858)
.+|.++. .+.|+++++|.+|.++|+++|++|+||+|..||||.........+..+..+ ..|+.|+||.+|+++
T Consensus 223 ~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~a 298 (476)
T COG5184 223 FTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLA 298 (476)
T ss_pred eeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcceEEE
Confidence 3444443 467999999999999999999999999999999999988777766666543 347789999999999
Q ss_pred EEcCCCEEEEEeCCCCCCCCCCCCC----ceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEe------CCCCCC
Q psy15269 387 LSQDGHTVWSMGSGNLGKLGHEDTG----KVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSS 456 (1858)
Q Consensus 387 Lt~dG~tVysWG~N~~GQLG~g~~~----~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WG------LG~gss 456 (1858)
|+++|+ ||+||.|.+||+|.+... ....|+....+.+..|..|++|..|+++|..+|.||+|| +|....
T Consensus 299 l~~~G~-i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~ 377 (476)
T COG5184 299 LDEDGE-IYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEE 377 (476)
T ss_pred EcCCCe-EEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCccc
Confidence 999995 999999999999998221 234555556667778999999999999999999999999 454442
Q ss_pred C-ccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeec--CCCceEEEEEec
Q psy15269 457 S-ISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVG--LEDVCVRQICAG 533 (1858)
Q Consensus 457 ~-~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~--L~~~~I~~Ia~G 533 (1858)
. .....|.++... .++.+++||..|.++.+.+|+||+||+|++||||.|+.......|..+.. ++...++..-||
T Consensus 378 ~~~~~~~~~~ls~~--~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~i~~g~~ 455 (476)
T COG5184 378 ITIDVSTPTKLSVA--IKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGYG 455 (476)
T ss_pred ceeecCCccccccc--cceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccccccCCCceEEeccC
Confidence 1 123334444332 37999999999999999999999999999999999998877778888864 566667777777
Q ss_pred CcceEEEe
Q psy15269 534 SLFSIAYT 541 (1858)
Q Consensus 534 ~~hS~alt 541 (1858)
.++++...
T Consensus 456 ~~~~v~~~ 463 (476)
T COG5184 456 NQFSVIEE 463 (476)
T ss_pred cceEEEec
Confidence 76666554
|
|
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=395.65 Aligned_cols=296 Identities=17% Similarity=0.214 Sum_probs=260.3
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.+.+|+|..+.|-+..-.. ....-+.||.|+|+||+|+-..+.-++.+.|- . -=.++.||...
T Consensus 133 TlAFLiPaie~l~k~~~~~-------r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~-~---------~v~~viGG~~~ 195 (543)
T KOG0342|consen 133 TLAFLLPAIELLRKLKFKP-------RNGTGVLIICPTRELAMQIFAEAKELLKYHES-I---------TVGIVIGGNNF 195 (543)
T ss_pred eeeehhHHHHHHHhcccCC-------CCCeeEEEecccHHHHHHHHHHHHHHHhhCCC-c---------ceEEEeCCccc
Confidence 5678999999988776555 35666799999999999999999998888741 1 12578999999
Q ss_pred chhhhhhhhhcccccccccccccCcccccc---ccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHH
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILMSPNYESD---VNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKF 996 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~~~~~~~~---~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~ 996 (1858)
..+...+.+++.+++||||||+|+....+. .....+|+||||| +++|||.++ |+.|++.+|+.
T Consensus 196 ~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADr----------lLd~GF~~d----i~~Ii~~lpk~ 261 (543)
T KOG0342|consen 196 SVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADR----------LLDIGFEED----VEQIIKILPKQ 261 (543)
T ss_pred hHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchh----------hhhcccHHH----HHHHHHhcccc
Confidence 999999999999999999999996654442 1123566888877 999999999 99999999999
Q ss_pred HHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcC-CCEEEEEccCC----cccEEEEEEECChhh
Q psy15269 997 RAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVE-DPIMKLVKPSS----VHLVKQYLIRTPKSQ 1071 (1858)
Q Consensus 997 RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~-dpv~I~v~~~~----~~~I~Q~~~~v~~~~ 1071 (1858)
|||+|| |||.|++|+++++..|+ ||++|.+.... ...+.|.|+.++...
T Consensus 262 rqt~LF--------------------------SAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~ 315 (543)
T KOG0342|consen 262 RQTLLF--------------------------SATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS 315 (543)
T ss_pred ceeeEe--------------------------eCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc
Confidence 999999 99999999999999885 69999885432 223999999999999
Q ss_pred HHHHHHHhhcC----CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccccc
Q psy15269 1072 KIVNLLSFLEG----KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFI 1147 (1858)
Q Consensus 1072 Kl~~Ll~lL~~----~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAAR 1147 (1858)
++..|+.+|+. .|+||||.|+..+.++++.|+...++|..|||+++ |..|..+..+|++.+..||||||||||
T Consensus 316 ~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~---Q~kRT~~~~~F~kaesgIL~cTDVaAR 392 (543)
T KOG0342|consen 316 RFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQK---QNKRTSTFFEFCKAESGILVCTDVAAR 392 (543)
T ss_pred hHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCc---ccccchHHHHHhhcccceEEecchhhc
Confidence 99999998875 78999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCCCCcceEEEcCCCCChhhhhhhc------cCcceEEEEecCcccHHHHHHHH
Q psy15269 1148 GNDFTNVEQVIIYNLPLSINHYVFQI------AGHKEAIAFYDPVADIGLASSLI 1196 (1858)
Q Consensus 1148 GLDIp~V~~VINyDlP~~~e~YIHRI------ag~~~aitfvt~~~e~~~l~~Ie 1196 (1858)
|+|||+|++||+||+|.++++||||+ ++.|.++.|+.| .|..+++.|+
T Consensus 393 GlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p-~El~Flr~LK 446 (543)
T KOG0342|consen 393 GLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAP-WELGFLRYLK 446 (543)
T ss_pred cCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeCh-hHHHHHHHHh
Confidence 99999999999999999999999999 333489999999 9999999988
|
|
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=388.08 Aligned_cols=295 Identities=18% Similarity=0.228 Sum_probs=255.0
Q ss_pred HHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCch
Q psy15269 842 RYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPST 921 (1858)
Q Consensus 842 ~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~ 921 (1858)
-+.+|+|+-|==-.+.. ...-|+++-|||+||.|+-.....+.+...+ .-.+..||+....
T Consensus 234 AF~lPiLERLlYrPk~~--------~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I-----------~~~L~vGGL~lk~ 294 (691)
T KOG0338|consen 234 AFALPILERLLYRPKKV--------AATRVLVLVPTRELAIQVHSVTKQLAQFTDI-----------TVGLAVGGLDLKA 294 (691)
T ss_pred hhHHHHHHHHhcCcccC--------cceeEEEEeccHHHHHHHHHHHHHHHhhccc-----------eeeeeecCccHHH
Confidence 46777777554333333 4456799999999999998888888888776 4488999999999
Q ss_pred hhhhhhhhcccccccccccccCccc---cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHH
Q psy15269 922 AIIDIDKFVRDMRHVSNNILMSPNY---ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRA 998 (1858)
Q Consensus 922 q~~dl~~~v~~l~~t~~~ll~~~~~---~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQ 998 (1858)
|-..|.+..|++++||||+||+.+. -+..+..-+|||+||| |++.||+.+ |.+|++.+|+.||
T Consensus 295 QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR----------MLeegFade----mnEii~lcpk~RQ 360 (691)
T KOG0338|consen 295 QEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR----------MLEEGFADE----MNEIIRLCPKNRQ 360 (691)
T ss_pred HHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHH----------HHHHHHHHH----HHHHHHhcccccc
Confidence 9999999999999999999984442 2334566677999988 999999999 9999999999999
Q ss_pred HHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcc--cEEEEEEECC---hhhHH
Q psy15269 999 ELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVH--LVKQYLIRTP---KSQKI 1073 (1858)
Q Consensus 999 tLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~--~I~Q~~~~v~---~~~Kl 1073 (1858)
|||| ||||.++|.+|+.--|++|++|.+.+...+ .+.|.|+.+. ..++-
T Consensus 361 TmLF--------------------------SATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRe 414 (691)
T KOG0338|consen 361 TMLF--------------------------SATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDRE 414 (691)
T ss_pred ceee--------------------------hhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccH
Confidence 9999 999999999999999999999999866544 4899998775 23344
Q ss_pred HHHHHhhc---CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCC
Q psy15269 1074 VNLLSFLE---GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGND 1150 (1858)
Q Consensus 1074 ~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLD 1150 (1858)
..|..++. ..++|||+.||+.|.++.-.|--.|+.+..|||.++ |.||..+|++||++++.|||||||||||||
T Consensus 415 a~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLt---Q~QRlesL~kFk~~eidvLiaTDvAsRGLD 491 (691)
T KOG0338|consen 415 AMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLT---QEQRLESLEKFKKEEIDVLIATDVASRGLD 491 (691)
T ss_pred HHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhccccc---HHHHHHHHHHHHhccCCEEEEechhhccCC
Confidence 44555554 489999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCcceEEEcCCCCChhhhhhhc-----cCcc-eEEEEecCcccHHHHHHHHHHH
Q psy15269 1151 FTNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLL 1199 (1858)
Q Consensus 1151 Ip~V~~VINyDlP~~~e~YIHRI-----ag~~-~aitfvt~~~e~~~l~~Ie~~l 1199 (1858)
|++|..||||++|.+.++|+||+ ||+. +++||+.. .|+.+++.|.+--
T Consensus 492 I~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE-~dRkllK~iik~~ 545 (691)
T KOG0338|consen 492 IEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGE-SDRKLLKEIIKSS 545 (691)
T ss_pred ccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEecc-ccHHHHHHHHhhh
Confidence 99999999999999999999999 4444 99999998 8999999988764
|
|
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=398.91 Aligned_cols=317 Identities=20% Similarity=0.237 Sum_probs=277.4
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
-..+|+|++..+=+-+...|....-+ .-.-..|+.|||+||-||=..+..+..+ .|+++...+||...
T Consensus 125 T~aFLiPii~~~~~~~~~~~~~~~~~-~~P~~lIlapTReL~~Qi~nea~k~~~~-----------s~~~~~~~ygg~~~ 192 (482)
T KOG0335|consen 125 TAAFLIPIISYLLDEGPEDRGESGGG-VYPRALILAPTRELVDQIYNEARKFSYL-----------SGMKSVVVYGGTDL 192 (482)
T ss_pred hHHHHHHHHHHHHhcCcccCcccCCC-CCCceEEEeCcHHHhhHHHHHHHhhccc-----------ccceeeeeeCCcch
Confidence 56799999999988888775333221 1123489999999999997777766554 45678899999999
Q ss_pred chhhhhhhhhcccccccccccccCc--cccccccccceeecccchhhhhhHHhhhhhh-cCCCchhhHHHHHHHHHhHH-
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILMSP--NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQ-TALSPREKTVLEQIFSVVNK- 995 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~~~--~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~-mGF~~~~~esL~~Il~~Lpk- 995 (1858)
+.|.+.+.++++++++||++|.+-. +-..+....++||||||| |+| |||.|+ |+.|+.++..
T Consensus 193 ~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADr----------MlD~mgF~p~----Ir~iv~~~~~~ 258 (482)
T KOG0335|consen 193 GAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADR----------MLDEMGFEPQ----IRKIVEQLGMP 258 (482)
T ss_pred hhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHH----------hhhhcccccc----HHHHhcccCCC
Confidence 9999999999999999999999844 444555566788888888 999 999999 9999999865
Q ss_pred ---HHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCC-CEEEEEcc--CCcccEEEEEEECCh
Q psy15269 996 ---FRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVED-PIMKLVKP--SSVHLVKQYLIRTPK 1069 (1858)
Q Consensus 996 ---~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~d-pv~I~v~~--~~~~~I~Q~~~~v~~ 1069 (1858)
.|||+|| |||+|..++.++..|+.+ ++++.|.. .+..++.|.+.+|.+
T Consensus 259 ~~~~~qt~mF--------------------------SAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~ 312 (482)
T KOG0335|consen 259 PKNNRQTLLF--------------------------SATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNE 312 (482)
T ss_pred CccceeEEEE--------------------------eccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecc
Confidence 8999999 999999999999999986 88887764 445569999999999
Q ss_pred hhHHHHHHHhhcC------------CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCc
Q psy15269 1070 SQKIVNLLSFLEG------------KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSS 1137 (1858)
Q Consensus 1070 ~~Kl~~Ll~lL~~------------~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ 1137 (1858)
.+|...|++++.. ++++|||+|++.|+.++.+|...++++..|||+.+ |.+|.++++.||+|++.
T Consensus 313 ~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~t---q~er~~al~~Fr~g~~p 389 (482)
T KOG0335|consen 313 MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRT---QIEREQALNDFRNGKAP 389 (482)
T ss_pred hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhh---hhHHHHHHHHhhcCCcc
Confidence 9999999988862 37999999999999999999999999999999999 99999999999999999
Q ss_pred EEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cCcc-eEEEEecCcccHHHHHHHHHHHhhcCCCCCCCcc
Q psy15269 1138 LVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNKHVPTHPH 1211 (1858)
Q Consensus 1138 ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag~~-~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~~ 1211 (1858)
+||||+||||||||++|+||||||+|.+.++||||| +|++ .|++|++. .+....+.|.+.+..+.|++|+|+.
T Consensus 390 vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~-~~~~i~~~L~~~l~ea~q~vP~wl~ 468 (482)
T KOG0335|consen 390 VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNE-KNQNIAKALVEILTEANQEVPQWLS 468 (482)
T ss_pred eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEecc-ccchhHHHHHHHHHHhcccCcHHHH
Confidence 999999999999999999999999999999999999 3333 89999996 8899999999999999999999876
Q ss_pred c
Q psy15269 1212 A 1212 (1858)
Q Consensus 1212 ~ 1212 (1858)
+
T Consensus 469 ~ 469 (482)
T KOG0335|consen 469 E 469 (482)
T ss_pred h
Confidence 5
|
|
| >KOG0341|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=384.58 Aligned_cols=303 Identities=20% Similarity=0.238 Sum_probs=263.1
Q ss_pred hhhccccccccccccCccceechHhHHHHHHHHHHhCCcC-----CCCCCCccchhhhccccccccccccCCchhhhhhh
Q psy15269 853 SLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDML-----LGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDID 927 (1858)
Q Consensus 853 ~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~-----~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~ 927 (1858)
+.-..+|+... .+...+||.|-|+||-|.=.-+..|. .|.|. |++.+-.||+.+..|..+++
T Consensus 234 eqE~~lPf~~~---EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~----------lRs~LciGG~~v~eql~~v~ 300 (610)
T KOG0341|consen 234 EQEMMLPFARG---EGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPE----------LRSLLCIGGVPVREQLDVVR 300 (610)
T ss_pred HHHhcCccccC---CCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChh----------hhhhhhhcCccHHHHHHHHh
Confidence 34455664332 44556999999999998755444432 24444 68899999999999999999
Q ss_pred hhcccccccccccccCccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCC
Q psy15269 928 KFVRDMRHVSNNILMSPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNA 1007 (1858)
Q Consensus 928 ~~v~~l~~t~~~ll~~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~ 1007 (1858)
+||.++++||+||.|-.. ...+.=.+|| |..+|+||+|.||||+++ ++.||......||||||
T Consensus 301 ~GvHivVATPGRL~DmL~-------KK~~sLd~CR-yL~lDEADRmiDmGFEdd----ir~iF~~FK~QRQTLLF----- 363 (610)
T KOG0341|consen 301 RGVHIVVATPGRLMDMLA-------KKIMSLDACR-YLTLDEADRMIDMGFEDD----IRTIFSFFKGQRQTLLF----- 363 (610)
T ss_pred cCeeEEEcCcchHHHHHH-------HhhccHHHHH-HhhhhhHHHHhhccchhh----HHHHHHHHhhhhheeee-----
Confidence 999999999999987221 1122234677 888888888999999999 99999999999999999
Q ss_pred CCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCccc--EEEEEEECChhhHHHHHHHhhcC--C
Q psy15269 1008 PSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHL--VKQYLIRTPKSQKIVNLLSFLEG--K 1083 (1858)
Q Consensus 1008 ~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~--I~Q~~~~v~~~~Kl~~Ll~lL~~--~ 1083 (1858)
|||||..|+.+|+..|..|+.|.|+.....+ +.|.+.++....|+..|+..|.. .
T Consensus 364 ---------------------SATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT~P 422 (610)
T KOG0341|consen 364 ---------------------SATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKTSP 422 (610)
T ss_pred ---------------------eccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccCCC
Confidence 9999999999999999999999998766555 66777778889999999999976 8
Q ss_pred cEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCC
Q psy15269 1084 RSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLP 1163 (1858)
Q Consensus 1084 k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP 1163 (1858)
+++|||..|..+|.+.++|--.|+.+++|||+.+ |++|..+++.||.|+..||||||||+.|||||++.||||||+|
T Consensus 423 pVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKD---QedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP 499 (610)
T KOG0341|consen 423 PVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKD---QEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMP 499 (610)
T ss_pred ceEEEeccccChHHHHHHHHHccceeEEeecCcc---hhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCCh
Confidence 8999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhc------cCcceEEEEecCcccHHHHHHHHHHHhhcCCCCCCC
Q psy15269 1164 LSINHYVFQI------AGHKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTH 1209 (1858)
Q Consensus 1164 ~~~e~YIHRI------ag~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~ 1209 (1858)
.++|.||||| +.+|.|.||++...+...+-++..++....|++|+.
T Consensus 500 ~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~ 551 (610)
T KOG0341|consen 500 EEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPV 551 (610)
T ss_pred HHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHH
Confidence 9999999999 333489999998889999999999999999999973
|
|
| >KOG0340|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=373.43 Aligned_cols=316 Identities=17% Similarity=0.126 Sum_probs=264.3
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCcccc-
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPNYE- 947 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~~~- 947 (1858)
....++.|+|+||+||...+--+.+-+.+ +..+++||..+-+|..+|.+..+++++||+++-+.-.-.
T Consensus 76 iFalvlTPTrELA~QiaEQF~alGk~l~l-----------K~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~ 144 (442)
T KOG0340|consen 76 IFALVLTPTRELALQIAEQFIALGKLLNL-----------KVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNL 144 (442)
T ss_pred ceEEEecchHHHHHHHHHHHHHhcccccc-----------eEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCC
Confidence 35699999999999999988776666665 779999999999999999999999999999998732211
Q ss_pred -----ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccc
Q psy15269 948 -----SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTST 1022 (1858)
Q Consensus 948 -----~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~ 1022 (1858)
.......+++||||| |++-+|.++ |+.|++.+|+.||||+|
T Consensus 145 ~~~~~~~~rlkflVlDEADr----------vL~~~f~d~----L~~i~e~lP~~RQtLlf-------------------- 190 (442)
T KOG0340|consen 145 GVCSWIFQRLKFLVLDEADR----------VLAGCFPDI----LEGIEECLPKPRQTLLF-------------------- 190 (442)
T ss_pred ccchhhhhceeeEEecchhh----------hhccchhhH----HhhhhccCCCccceEEE--------------------
Confidence 224466778888888 999899999 99999999999999999
Q ss_pred ccccCCCCCCcHhHHHHHHHhcCC--CEEEEEcc--CCcccEEEEEEECChhhHHHHHHHhhcC------CcEEEEecCh
Q psy15269 1023 QHNSTDSLFSWGDIEEESNIEVED--PIMKLVKP--SSVHLVKQYLIRTPKSQKIVNLLSFLEG------KRSLIFVKTY 1092 (1858)
Q Consensus 1023 ~~~~~eSAT~p~~I~~la~~~L~d--pv~I~v~~--~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~------~k~IIFvnTk 1092 (1858)
|||+.+.++++-.--.++ +.++.+.+ ...+.+.|.|+.|+...|-..|+++|+. ..++||+||+
T Consensus 191 ------SATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvntt 264 (442)
T KOG0340|consen 191 ------SATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTT 264 (442)
T ss_pred ------EeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehh
Confidence 999999999987766665 44454432 2333489999999999999999999974 5699999999
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhh
Q psy15269 1093 RDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQ 1172 (1858)
Q Consensus 1093 ~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHR 1172 (1858)
+.|+.|+..|+..++.+.++|+.|+ |++|..+|.+||++.++||||||||+||||||.|++|||||+|.+|.+||||
T Consensus 265 r~cQ~l~~~l~~le~r~~~lHs~m~---Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHR 341 (442)
T KOG0340|consen 265 RECQLLSMTLKNLEVRVVSLHSQMP---QKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHR 341 (442)
T ss_pred HHHHHHHHHHhhhceeeeehhhcch---HHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHh
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred c-----cCcc-eEEEEecCcccHHHHHHHHHHHhhcCCCCCCCccccCchhhHhhhhcHHHHHHHHHhhhhhh
Q psy15269 1173 I-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNKHVPTHPHANGNTLLREVSSNMIHILAIACANHIED 1239 (1858)
Q Consensus 1173 I-----ag~~-~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~~~~~~~~~kia~~rl~~il~~aa~~~ed~ 1239 (1858)
+ ||++ .||+|+++ .|..++..||..++++..+.+......-.-+.++..++....+.+......|.
T Consensus 342 vGRtARAGR~G~aiSivt~-rDv~l~~aiE~~igkKl~e~~~~~~~~~~~~t~V~~akrea~m~m~~~~F~er 413 (442)
T KOG0340|consen 342 VGRTARAGRKGMAISIVTQ-RDVELLQAIEEEIGKKLTEYNKVQRTVELYVTQVTVAKREAEMKMDNNGFGER 413 (442)
T ss_pred hcchhcccCCcceEEEech-hhHHHHHHHHHHHhcccccccccchhhheehhhHHHHHHHHHHHhhhcchhHH
Confidence 9 5555 99999998 99999999999999998887643332222344554444444455544444443
|
|
| >KOG0343|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=386.80 Aligned_cols=297 Identities=19% Similarity=0.244 Sum_probs=252.2
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.|.+++|+|++|-+.---- .++.-+.||.|||+||+|+=..+.......-. +..++.||-..
T Consensus 120 TLAFlvPvlE~L~r~kWs~-------~DGlGalIISPTRELA~QtFevL~kvgk~h~f-----------SaGLiiGG~~~ 181 (758)
T KOG0343|consen 120 TLAFLVPVLEALYRLKWSP-------TDGLGALIISPTRELALQTFEVLNKVGKHHDF-----------SAGLIIGGKDV 181 (758)
T ss_pred eeeehHHHHHHHHHcCCCC-------CCCceeEEecchHHHHHHHHHHHHHHhhcccc-----------ccceeecCchh
Confidence 5678999999997753322 56777899999999999998888877776665 44666676553
Q ss_pred chhhhhhhhhccccccccccccc--Ccc-ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHH
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILM--SPN-YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKF 996 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~--~~~-~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~ 996 (1858)
..+...+ ..|.+++-||||+|. ++. +-+......+||||||| |++|||... |.+|++.+|+.
T Consensus 182 k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR----------~LDMGFk~t----L~~Ii~~lP~~ 246 (758)
T KOG0343|consen 182 KFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADR----------MLDMGFKKT----LNAIIENLPKK 246 (758)
T ss_pred HHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHH----------HHHHhHHHH----HHHHHHhCChh
Confidence 3222222 258899999999995 333 33334456667999988 999999999 99999999999
Q ss_pred HHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccC----CcccEEEEEEECChhhH
Q psy15269 997 RAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPS----SVHLVKQYLIRTPKSQK 1072 (1858)
Q Consensus 997 RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~----~~~~I~Q~~~~v~~~~K 1072 (1858)
|||||| |||....+++||+--++||.+|.+... ...+++|+|+.++-.+|
T Consensus 247 RQTLLF--------------------------SATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~K 300 (758)
T KOG0343|consen 247 RQTLLF--------------------------SATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDK 300 (758)
T ss_pred heeeee--------------------------ecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhH
Confidence 999999 999999999999999999999998633 33459999999999999
Q ss_pred HHHHHHhhcC---CcEEEEecChHHHHHHHHHHhh--CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccccc
Q psy15269 1073 IVNLLSFLEG---KRSLIFVKTYRDASRIISAVQD--SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFI 1147 (1858)
Q Consensus 1073 l~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~--~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAAR 1147 (1858)
++.|..||+. .++|||+.|++.|.++++.+++ -|++..+|||.|+ |..|..++++|-..+.-||+||||+||
T Consensus 301 i~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~---Q~~R~ev~~~F~~~~~~vLF~TDv~aR 377 (758)
T KOG0343|consen 301 IDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMS---QKKRIEVYKKFVRKRAVVLFCTDVAAR 377 (758)
T ss_pred HHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchh---HHHHHHHHHHHHHhcceEEEeehhhhc
Confidence 9999999986 7899999999999999999997 5999999999999 999999999999989999999999999
Q ss_pred CCCCCCcceEEEcCCCCChhhhhhhc---cC---cceEEEEecCcccHHHHHHHHHH
Q psy15269 1148 GNDFTNVEQVIIYNLPLSINHYVFQI---AG---HKEAIAFYDPVADIGLASSLIKL 1198 (1858)
Q Consensus 1148 GLDIp~V~~VINyDlP~~~e~YIHRI---ag---~~~aitfvt~~~e~~~l~~Ie~~ 1198 (1858)
|||||.|++||+||+|.+.++||||+ |+ +|.++.+++|.++..++..|++.
T Consensus 378 GLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 378 GLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred cCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 99999999999999999999999999 33 34899999996667888877764
|
|
| >COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=375.43 Aligned_cols=332 Identities=27% Similarity=0.415 Sum_probs=268.7
Q ss_pred cCCEEEEEecCCcEEEEccc---ccCCCCCCCC-CCceeecCc-cCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCc
Q psy15269 227 GQFCTFLLDSTGGLLVYGKG---WLGLANTTIQ-PLPKRVPLE-AAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKL 301 (1858)
Q Consensus 227 G~~hTlaLt~dG~VyawG~N---qLGlg~~~~~-~~P~~V~~~-~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQL 301 (1858)
-..|...++.-+.||+||+| ++|+++.... ..|...++. .....|..++||+.|+++|++||+||+||.|..|+|
T Consensus 57 ~~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~L 136 (476)
T COG5184 57 INKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGAL 136 (476)
T ss_pred cccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccc
Confidence 34566688888999999997 9998876655 778887766 244677789999999999999999999999999999
Q ss_pred CCCCC----------------cccccceeeec---CCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCcc
Q psy15269 302 GHGNT----------------LSQRRPKLIMG---GLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSR 362 (1858)
Q Consensus 302 G~g~~----------------~~~~~P~~V~~---~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~ 362 (1858)
|.... ....+|..+.. .....+|++++||++++++++++|+||+||.+..+.++.+...+.
T Consensus 137 gr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s 216 (476)
T COG5184 137 GRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNS 216 (476)
T ss_pred ccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccccc
Confidence 98761 12457888875 223458999999999999999999999999998888888844332
Q ss_pred ------ccccccccCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeeccc-ccEEEEEecCc
Q psy15269 363 ------HTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRK-FRVRKVCAGTS 435 (1858)
Q Consensus 363 ------~~P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~-~~Iv~IaaG~~ 435 (1858)
.+|..+. ...|+++++|.+|.++|+++|+ ||+||+|..||||.........+..+..+.. ..|.+|+||.+
T Consensus 217 ~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~-vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~ 294 (476)
T COG5184 217 QKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGK-VYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKD 294 (476)
T ss_pred ccceeeeeeeecC-chheeeeccCCceEEEEecCCc-EEEecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcc
Confidence 3455544 3569999999999999999995 9999999999999998887766666654332 34789999999
Q ss_pred eEEEEecCCcEEEEe------CCCCCC---CccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCC
Q psy15269 436 FSVALTWDGLVFWWG------LGLRSS---SISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQ 506 (1858)
Q Consensus 436 hSlALT~dG~Vy~WG------LG~gss---~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~ 506 (1858)
|++||+++|++|+|| +|.++. ......|.....+.+..|..|++|..|+++|..+|.+|+||+++.||||.
T Consensus 295 h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~ 374 (476)
T COG5184 295 HSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGI 374 (476)
T ss_pred eEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccC
Confidence 999999999999999 444411 12345566666667778999999999999999999999999999999999
Q ss_pred CCCCC-CcccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEeeccCcccccCCcch
Q psy15269 507 DNFSN-PVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTF 565 (1858)
Q Consensus 507 G~~~~-~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~WG~n~~gqLg~~t~ 565 (1858)
.+..+ .++.|.++... .++.+++||..|+++.+ .+|.||+||.+.++++|....
T Consensus 375 ~~~~~~~~~~~~~ls~~--~~~~~v~~gt~~~~~~t---~~gsvy~wG~ge~gnlG~g~~ 429 (476)
T COG5184 375 QEEITIDVSTPTKLSVA--IKLEQVACGTHHNIART---DDGSVYSWGWGEHGNLGNGPK 429 (476)
T ss_pred cccceeecCCccccccc--cceEEEEecCccceeec---cCCceEEecCchhhhccCCch
Confidence 87432 23344444332 35899999999999998 789999999999999997655
|
|
| >KOG0345|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=373.05 Aligned_cols=294 Identities=17% Similarity=0.205 Sum_probs=254.9
Q ss_pred cHHHHHHHHHHHHhhhc-cccccccccccCccceechHhHHHHHHHHHHhCCcCCC-CCCCccchhhhcccccccccccc
Q psy15269 840 TLRYFLAILPLLDSLNQ-LLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLG-PPEAHEETETVHWLKTSLLSAGL 917 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~-~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~-~pl~~~e~~~~~wL~s~~~~GG~ 917 (1858)
.|-+++|+|+.+-+.+- ..|. ..-..||.|+|+||.||-..+..++.. ++ |+..++.||.
T Consensus 57 TlAFllP~le~i~rr~~~~~~~-------~vgalIIsPTRELa~QI~~V~~~F~~~l~~-----------l~~~l~vGG~ 118 (567)
T KOG0345|consen 57 TLAFLLPMLEIIYRREAKTPPG-------QVGALIISPTRELARQIREVAQPFLEHLPN-----------LNCELLVGGR 118 (567)
T ss_pred hhhHHHHHHHHHHhhccCCCcc-------ceeEEEecCcHHHHHHHHHHHHHHHHhhhc-----------cceEEEecCc
Confidence 57799999999955554 4422 122389999999999998888877777 33 4678999998
Q ss_pred CCchhhhhhhh-hccccccccccccc--Cccccccc--cccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHH
Q psy15269 918 EPSTAIIDIDK-FVRDMRHVSNNILM--SPNYESDV--NKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSV 992 (1858)
Q Consensus 918 ~~~~q~~dl~~-~v~~l~~t~~~ll~--~~~~~~~~--~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~ 992 (1858)
.+..++.-+.. +..++++|||||+| ..+.+... ...-+||||||| |++|||+.+ ++.|++.
T Consensus 119 ~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADr----------LldmgFe~~----~n~ILs~ 184 (567)
T KOG0345|consen 119 SVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADR----------LLDMGFEAS----VNTILSF 184 (567)
T ss_pred cHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHh----------HhcccHHHH----HHHHHHh
Confidence 88888877775 88899999999997 44344333 566677999999 999999999 9999999
Q ss_pred hHHHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc--c--cEEEEEEECC
Q psy15269 993 VNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV--H--LVKQYLIRTP 1068 (1858)
Q Consensus 993 Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~--~--~I~Q~~~~v~ 1068 (1858)
|||.|.|-|| |||+.+++.+|++..|+||+.|.|+.+.. + .+.-+|+.|+
T Consensus 185 LPKQRRTGLF--------------------------SATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~ 238 (567)
T KOG0345|consen 185 LPKQRRTGLF--------------------------SATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCE 238 (567)
T ss_pred cccccccccc--------------------------cchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEec
Confidence 9999999999 99999999999999999999999976654 2 3889999999
Q ss_pred hhhHHHHHHHhhcC---CcEEEEecChHHHHHHHHHHhh--CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc
Q psy15269 1069 KSQKIVNLLSFLEG---KRSLIFVKTYRDASRIISAVQD--SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL 1143 (1858)
Q Consensus 1069 ~~~Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~--~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD 1143 (1858)
..+|+..|+++|.. .|+|||..|+..+++....|.. ...++.++||+|+ |.+|.++++.|++..-.+|+|||
T Consensus 239 a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~---q~~R~k~~~~F~~~~~~vl~~TD 315 (567)
T KOG0345|consen 239 ADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMS---QKARAKVLEAFRKLSNGVLFCTD 315 (567)
T ss_pred HHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhc---chhHHHHHHHHHhccCceEEeeh
Confidence 99999999999987 8999999999999999999987 4778999999999 99999999999998999999999
Q ss_pred ccccCCCCCCcceEEEcCCCCChhhhhhhc------cCcceEEEEecCcccHHHHHHH
Q psy15269 1144 SDFIGNDFTNVEQVIIYNLPLSINHYVFQI------AGHKEAIAFYDPVADIGLASSL 1195 (1858)
Q Consensus 1144 VAARGLDIp~V~~VINyDlP~~~e~YIHRI------ag~~~aitfvt~~~e~~~l~~I 1195 (1858)
|||||||||+|++||+||+|.++..|+||+ ++.|.||.|+.| .|..++..+
T Consensus 316 VaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p-~E~aYveFl 372 (567)
T KOG0345|consen 316 VAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNP-REEAYVEFL 372 (567)
T ss_pred hhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecc-cHHHHHHHH
Confidence 999999999999999999999999999999 334499999999 776665543
|
|
| >KOG0326|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=358.07 Aligned_cols=302 Identities=17% Similarity=0.155 Sum_probs=269.5
Q ss_pred HHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchh
Q psy15269 843 YFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTA 922 (1858)
Q Consensus 843 ~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q 922 (1858)
+++|+|+-+|--+. .....++=|+|+||+|+.+.+.-|..++.+ +..+..||..+.-+
T Consensus 139 ~~IP~Lekid~~~~-----------~IQ~~ilVPtrelALQtSqvc~~lskh~~i-----------~vmvttGGT~lrDD 196 (459)
T KOG0326|consen 139 YCIPVLEKIDPKKN-----------VIQAIILVPTRELALQTSQVCKELSKHLGI-----------KVMVTTGGTSLRDD 196 (459)
T ss_pred eechhhhhcCcccc-----------ceeEEEEeecchhhHHHHHHHHHHhcccCe-----------EEEEecCCcccccc
Confidence 67787777664433 334578899999999999999999998887 44667999999999
Q ss_pred hhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHH
Q psy15269 923 IIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAEL 1000 (1858)
Q Consensus 923 ~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtL 1000 (1858)
+..+...|..+++||+|.+| .++....+...-+|+||||+ |+...|++- ++.++..+|+.||-|
T Consensus 197 I~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADK----------lLs~~F~~~----~e~li~~lP~~rQil 262 (459)
T KOG0326|consen 197 IMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADK----------LLSVDFQPI----VEKLISFLPKERQIL 262 (459)
T ss_pred eeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhh----------hhchhhhhH----HHHHHHhCCccceee
Confidence 99999999999999999997 77777777778888999988 999999999 999999999999999
Q ss_pred hhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccC-CcccEEEEEEECChhhHHHHHHHh
Q psy15269 1001 LSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPS-SVHLVKQYLIRTPKSQKIVNLLSF 1079 (1858)
Q Consensus 1001 Lf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~-~~~~I~Q~~~~v~~~~Kl~~Ll~l 1079 (1858)
|| |||+|-.|..+..++|++|..|.+-.+ +...+.|+|.++.+++|+..|-.+
T Consensus 263 ly--------------------------SATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntL 316 (459)
T KOG0326|consen 263 LY--------------------------SATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTL 316 (459)
T ss_pred EE--------------------------ecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHHH
Confidence 99 999999999999999999999977533 334599999999999996655544
Q ss_pred ---hcCCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcce
Q psy15269 1080 ---LEGKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQ 1156 (1858)
Q Consensus 1080 ---L~~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~ 1156 (1858)
|.-.+.|||||+.++++.||..+.+.|+++..+|.+|. |+.|.+++.+||+|.++.|||||+.-|||||+.|+.
T Consensus 317 fskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~---Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNv 393 (459)
T KOG0326|consen 317 FSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMA---QEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNV 393 (459)
T ss_pred HHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHH---HhhhhhhhhhhhccccceeeehhhhhcccccceeeE
Confidence 44589999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhhhhccC------cceEEEEecCcccHHHHHHHHHHHhhcCCCCCCCc
Q psy15269 1157 VIIYNLPLSINHYVFQIAG------HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTHP 1210 (1858)
Q Consensus 1157 VINyDlP~~~e~YIHRIag------~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~ 1210 (1858)
|||||+|.++|+|+||||+ -|.||++++- +|+..+.+||+.++.+++++|...
T Consensus 394 VINFDfpk~aEtYLHRIGRsGRFGhlGlAInLity-edrf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 394 VINFDFPKNAETYLHRIGRSGRFGHLGLAINLITY-EDRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred EEecCCCCCHHHHHHHccCCccCCCcceEEEEEeh-hhhhhHHHHHHHhccccccCCCcC
Confidence 9999999999999999933 2389999998 999999999999999999999643
|
|
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=362.77 Aligned_cols=305 Identities=17% Similarity=0.176 Sum_probs=272.4
Q ss_pred HHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchh
Q psy15269 843 YFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTA 922 (1858)
Q Consensus 843 ~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q 922 (1858)
++.|.+.++-+...|.|..| ....++-|+|+||.||=..+..+..+-.+ +...++||..+..|
T Consensus 277 fi~pm~~himdq~eL~~g~g------Pi~vilvPTrela~Qi~~eaKkf~K~ygl-----------~~v~~ygGgsk~eQ 339 (731)
T KOG0339|consen 277 FIWPMIVHIMDQPELKPGEG------PIGVILVPTRELASQIFSEAKKFGKAYGL-----------RVVAVYGGGSKWEQ 339 (731)
T ss_pred HHHHHHHHhcchhhhcCCCC------CeEEEEeccHHHHHHHHHHHHHhhhhccc-----------eEEEeecCCcHHHH
Confidence 56677777777777774333 34589999999999998888777666555 55889999999999
Q ss_pred hhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHH
Q psy15269 923 IIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAEL 1000 (1858)
Q Consensus 923 ~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtL 1000 (1858)
+..|+.+.+++++||+|+|| .....+...+.++|+||+|| |++|||.++ ++.|-..+...||||
T Consensus 340 ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadr----------mfdmGfe~q----VrSI~~hirpdrQtl 405 (731)
T KOG0339|consen 340 SKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADR----------MFDMGFEPQ----VRSIKQHIRPDRQTL 405 (731)
T ss_pred HHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhh----------hhccccHHH----HHHHHhhcCCcceEE
Confidence 99999999999999999997 77788889999999999999 999999999 999999999999999
Q ss_pred hhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCC--cccEEEEEEECCh-hhHHHHHH
Q psy15269 1001 LSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSS--VHLVKQYLIRTPK-SQKIVNLL 1077 (1858)
Q Consensus 1001 Lf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~--~~~I~Q~~~~v~~-~~Kl~~Ll 1077 (1858)
|| |||++..|+++|+.+|.||++|...... ...|.|.+..|+. ..|+..|+
T Consensus 406 lF--------------------------saTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~ 459 (731)
T KOG0339|consen 406 LF--------------------------SATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLL 459 (731)
T ss_pred Ee--------------------------eccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHH
Confidence 99 9999999999999999999998766443 3449999988864 56777776
Q ss_pred Hhhc----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCC
Q psy15269 1078 SFLE----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTN 1153 (1858)
Q Consensus 1078 ~lL~----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~ 1153 (1858)
+-|. .+++|||+..+..++.++..|+..|+++..+||+|. |.+|.++|.+||++...||||||||+||+||++
T Consensus 460 ~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkd---qa~rn~~ls~fKkk~~~VlvatDvaargldI~~ 536 (731)
T KOG0339|consen 460 RHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKD---QAERNEVLSKFKKKRKPVLVATDVAARGLDIPS 536 (731)
T ss_pred HHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchh---hHHHHHHHHHHhhcCCceEEEeeHhhcCCCccc
Confidence 6554 379999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1154 VEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1154 V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
+..|||||+-.+++.|+||| +| +|+++|++++ .|..+...|.+.|....|.+|+
T Consensus 537 ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTe-KDa~fAG~LVnnLe~agQnVP~ 596 (731)
T KOG0339|consen 537 IKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTE-KDAEFAGHLVNNLEGAGQNVPD 596 (731)
T ss_pred cceeecccccchhHHHHHHhhhcccccccceeeEEech-hhHHHhhHHHHHHhhccccCCh
Confidence 99999999999999999999 33 3399999999 8999999999999999999997
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=378.29 Aligned_cols=305 Identities=21% Similarity=0.273 Sum_probs=260.8
Q ss_pred HHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchh
Q psy15269 843 YFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTA 922 (1858)
Q Consensus 843 ~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q 922 (1858)
+++|+|.++.....+. .++...+++|.|+|+||.||-..+..+.....+ +..+.+||.....|
T Consensus 184 ylLP~l~~i~~~~~~~------~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i-----------~~~~~~gg~~~~~q 246 (545)
T PTZ00110 184 FLLPAIVHINAQPLLR------YGDGPIVLVLAPTRELAEQIREQCNKFGASSKI-----------RNTVAYGGVPKRGQ 246 (545)
T ss_pred HHHHHHHHHHhccccc------CCCCcEEEEECChHHHHHHHHHHHHHHhcccCc-----------cEEEEeCCCCHHHH
Confidence 4566666665433222 123345799999999999999988887665544 55778999999999
Q ss_pred hhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHH
Q psy15269 923 IIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAEL 1000 (1858)
Q Consensus 923 ~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtL 1000 (1858)
...+.++++++++||+++++ ..+..+......+|+||||+ |+++||.++ ++.|+..++..||++
T Consensus 247 ~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~----------mld~gf~~~----i~~il~~~~~~~q~l 312 (545)
T PTZ00110 247 IYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADR----------MLDMGFEPQ----IRKIVSQIRPDRQTL 312 (545)
T ss_pred HHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHh----------hhhcchHHH----HHHHHHhCCCCCeEE
Confidence 99999999999999999986 33445555667777888877 999999999 999999999999999
Q ss_pred hhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcC-CCEEEEEccCC---cccEEEEEEECChhhHHHHH
Q psy15269 1001 LSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVE-DPIMKLVKPSS---VHLVKQYLIRTPKSQKIVNL 1076 (1858)
Q Consensus 1001 Lf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~-dpv~I~v~~~~---~~~I~Q~~~~v~~~~Kl~~L 1076 (1858)
+| |||+|++++++++.++. +|+.+.+.... ..+++|.++.++..+|...|
T Consensus 313 ~~--------------------------SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L 366 (545)
T PTZ00110 313 MW--------------------------SATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKL 366 (545)
T ss_pred EE--------------------------EeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHH
Confidence 99 99999999999999986 69988876433 34588998888877787777
Q ss_pred HHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCC
Q psy15269 1077 LSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDF 1151 (1858)
Q Consensus 1077 l~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDI 1151 (1858)
..++. ..++||||+|++.|+.+++.|+..|+++..+||+|+ |.+|.+++++|++|+++||||||+++|||||
T Consensus 367 ~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~---~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi 443 (545)
T PTZ00110 367 KMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKK---QEERTWVLNEFKTGKSPIMIATDVASRGLDV 443 (545)
T ss_pred HHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCc---HHHHHHHHHHHhcCCCcEEEEcchhhcCCCc
Confidence 76664 369999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCcceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1152 TNVEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1152 p~V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
++|++|||||+|.++++|+||+ +| ++.+++|+++ ++...++.|.+.++...+++|+
T Consensus 444 ~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~-~~~~~~~~l~~~l~~~~q~vp~ 505 (545)
T PTZ00110 444 KDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTP-DKYRLARDLVKVLREAKQPVPP 505 (545)
T ss_pred ccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECc-chHHHHHHHHHHHHHccCCCCH
Confidence 9999999999999999999999 22 2389999998 8899999999999999999997
|
|
| >KOG1427|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=321.82 Aligned_cols=350 Identities=22% Similarity=0.352 Sum_probs=283.4
Q ss_pred eCCeEEEEcCCCCCCCCcCCC---CCcccccccCCCC--CeEEEEEc--CCEEEEEecCCcEEEEccc---ccCCCCCCC
Q psy15269 186 AHSKVYTWGCNLHHQILDEVR---GKCSRPRLQSLPS--NIRHIEAG--QFCTFLLDSTGGLLVYGKG---WLGLANTTI 255 (1858)
Q Consensus 186 s~g~Vy~WGsN~~GQLG~g~~---~~~~~P~~v~~~~--~IkqVA~G--~~hTlaLt~dG~VyawG~N---qLGlg~~~~ 255 (1858)
..|+++..|.-...+.|.... .+...|.+..... +|+-|+.| ..|+++|+-+|+.|.||.| |||.++...
T Consensus 18 ~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~ 97 (443)
T KOG1427|consen 18 KGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQ 97 (443)
T ss_pred CCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccchhh
Confidence 447788888777666664432 2345566554333 47777766 4899999999999999987 999998888
Q ss_pred CCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcc-cccceeeecCCCCCcEEEEEecCceE
Q psy15269 256 QPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLS-QRRPKLIMGGLYGKRVTQVSAGHSHS 334 (1858)
Q Consensus 256 ~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~-~~~P~~V~~~l~~~~IvqVa~G~~HS 334 (1858)
...|+.|+..... +|.+.+||++|+++||++|+||+||.|.+||||.++..+ ...|..+. ..+..|+.|+||..++
T Consensus 98 ~e~Ptvi~gL~~~-~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~--~~~~~v~~v~cga~ft 174 (443)
T KOG1427|consen 98 RERPTVISGLSKH-KIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPC--VVSDEVTNVACGADFT 174 (443)
T ss_pred ccCCchhhhhhhh-hHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCcc--ccCccceeeccccceE
Confidence 8888888765444 345578999999999999999999999999999998754 33333332 3456799999999999
Q ss_pred EEEEeCCeEEEEecCCCCCCCCCCCCc--------------cccccccccCCC--ceEEeecCceEEEEEcCCCEEEEEe
Q psy15269 335 AAVTEDGLLYTWGEGDHGRLGHGDLKS--------------RHTPTLVTELSD--VGAVSCGESHTLVLSQDGHTVWSMG 398 (1858)
Q Consensus 335 ~aLT~dG~VYtWG~N~~GQLG~G~~~~--------------~~~P~~V~~l~~--I~~IAcG~~HTlaLt~dG~tVysWG 398 (1858)
+.|+..+.+.++|.-.|||||+++... +..|..|..+.+ |++++||.+||++++++++ ||+||
T Consensus 175 v~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkr-VysWG 253 (443)
T KOG1427|consen 175 VWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKR-VYSWG 253 (443)
T ss_pred EEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCcc-EEEec
Confidence 999999999999999999999985432 234555666655 7899999999999999996 99999
Q ss_pred CCCCCCCCCCCCCceeccEEeeecc--cccEEEEEecCceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEE
Q psy15269 399 SGNLGKLGHEDTGKVTTPKVIEALR--KFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVD 476 (1858)
Q Consensus 399 ~N~~GQLG~g~~~~~~~P~~V~~l~--~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~ 476 (1858)
.+.||.||+....+...|+.++.+. +.--.++.||+.+++++.+-|.+|.||.-.. +.....+|+.+..+.+-++..
T Consensus 254 FGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~-~ge~~mypkP~~dlsgwnl~~ 332 (443)
T KOG1427|consen 254 FGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN-NGEDWMYPKPMMDLSGWNLRW 332 (443)
T ss_pred cccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc-CcccccCCCchhhcCCccCCC
Confidence 9999999999999999999887653 3345689999999999999999999993221 223456899999999999999
Q ss_pred EEEcCceEEEEEeCCeEEEEeCCCCCCC-CCCCCCCCcccCeeeecCCCceEEEEEecCcceEEEe
Q psy15269 477 VSIGDSHVLALSQYNEVYAWGSNTMGQC-GQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYT 541 (1858)
Q Consensus 477 Ia~G~~HtlALt~dG~VYaWG~N~~GQL-G~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt 541 (1858)
+.||..|.++- .|....+||...+|.+ |.+........|.+++.+.+..|.+|++|..||+++.
T Consensus 333 ~~~~~~h~~v~-ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~VamGysHs~viv 397 (443)
T KOG1427|consen 333 MDSGSMHHFVG-ADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGVAMGYSHSMVIV 397 (443)
T ss_pred cCccceeeeec-ccccccccccccccccccCccccccccCccccchhcceeccceeeccceEEEEE
Confidence 99999998765 5678999999988874 5555555667899999999999999999999999997
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=367.63 Aligned_cols=350 Identities=16% Similarity=0.152 Sum_probs=279.1
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|+++.++.-. ....+.++-|+|+||.|+...+..+....+- ++...++||..+.
T Consensus 58 ~af~lpll~~l~~~~-----------~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~----------i~v~~~~gG~~~~ 116 (629)
T PRK11634 58 AAFSLPLLHNLDPEL-----------KAPQILVLAPTRELAVQVAEAMTDFSKHMRG----------VNVVALYGGQRYD 116 (629)
T ss_pred HHHHHHHHHHhhhcc-----------CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCC----------ceEEEEECCcCHH
Confidence 347788887775321 1234689999999999998887766543321 2345678999888
Q ss_pred hhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRA 998 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQ 998 (1858)
.|...+.+++++++.||+++++ ............+|+|||++ |++|||..+ ++.|++.+|+.+|
T Consensus 117 ~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~----------ml~~gf~~d----i~~Il~~lp~~~q 182 (629)
T PRK11634 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE----------MLRMGFIED----VETIMAQIPEGHQ 182 (629)
T ss_pred HHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH----------HhhcccHHH----HHHHHHhCCCCCe
Confidence 8888888899999999999997 33344455667788888887 999999999 9999999999999
Q ss_pred HHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc--ccEEEEEEECChhhHHHHH
Q psy15269 999 ELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV--HLVKQYLIRTPKSQKIVNL 1076 (1858)
Q Consensus 999 tLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~--~~I~Q~~~~v~~~~Kl~~L 1076 (1858)
+++| |||+|+.+.++++.|+++|..|.+..... ..+.|.|+.+...+|...|
T Consensus 183 ~llf--------------------------SAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L 236 (629)
T PRK11634 183 TALF--------------------------SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL 236 (629)
T ss_pred EEEE--------------------------EccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHH
Confidence 9999 99999999999999999999988765443 3488999999888898888
Q ss_pred HHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCC
Q psy15269 1077 LSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTN 1153 (1858)
Q Consensus 1077 l~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~ 1153 (1858)
.+++.. .++||||+|+..++.+++.|.+.|+.+..+||+|+ |.+|.+++++|++|+++||||||+++||||+|+
T Consensus 237 ~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~---q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~ 313 (629)
T PRK11634 237 VRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMN---QALREQTLERLKDGRLDILIATDVAARGLDVER 313 (629)
T ss_pred HHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCC---HHHHHHHHHHHhCCCCCEEEEcchHhcCCCccc
Confidence 888764 68999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cceEEEcCCCCChhhhhhhc-----cCc-ceEEEEecCcccHHHHHHHHHHHhhcCCCCCCCcccc--Cchh--------
Q psy15269 1154 VEQVIIYNLPLSINHYVFQI-----AGH-KEAIAFYDPVADIGLASSLIKLLEYSNKHVPTHPHAN--GNTL-------- 1217 (1858)
Q Consensus 1154 V~~VINyDlP~~~e~YIHRI-----ag~-~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~~~~--~~~~-------- 1217 (1858)
|++|||||+|.++++|+||+ +|+ +.|++|+++ .|..+++.|++.++....+++....+. ....
T Consensus 314 V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~-~e~~~l~~ie~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~ 392 (629)
T PRK11634 314 ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN-RERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQ 392 (629)
T ss_pred CCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEech-HHHHHHHHHHHHhCCCcceecCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 333 389999998 888999999999988776543211110 0001
Q ss_pred hHhhhhcHHHHHHHHHhhhh-----hhchHHHHHHHHHHHHHH
Q psy15269 1218 LREVSSNMIHILAIACANHI-----EDLNESVRSKLTSCLHVY 1255 (1858)
Q Consensus 1218 ~kia~~rl~~il~~aa~~~e-----d~l~~~v~~all~ll~~q 1255 (1858)
..+....+..+..++..+.+ +....+++++++.+....
T Consensus 393 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~a~~~~~~~~ 435 (629)
T PRK11634 393 QQLESSDLDQYRALLAKIQPTAEGEELDLETLAAALLKMAQGE 435 (629)
T ss_pred HHhhhhhHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHHcCC
Confidence 11112223344444444443 356777788888777653
|
|
| >KOG0348|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=334.53 Aligned_cols=303 Identities=17% Similarity=0.246 Sum_probs=253.5
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.|.+|+|++++|-+.--.+ .+ -++.++++|-||||||+||=..+..++. +-+|+-...+.||-..
T Consensus 188 TLAYllPiVq~Lq~m~~ki---~R--s~G~~ALVivPTREL~~Q~y~~~qKLl~----------~~hWIVPg~lmGGEkk 252 (708)
T KOG0348|consen 188 TLAYLLPIVQSLQAMEPKI---QR--SDGPYALVIVPTRELALQIYETVQKLLK----------PFHWIVPGVLMGGEKK 252 (708)
T ss_pred cHHHHHHHHHHHHhcCccc---cc--cCCceEEEEechHHHHHHHHHHHHHHhc----------CceEEeeceeeccccc
Confidence 6789999999987765444 11 2566789999999999999877776653 4689999999999999
Q ss_pred chhhhhhhhhcccccccccccccCcc---ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHh---
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILMSPN---YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVV--- 993 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~~~~---~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~L--- 993 (1858)
..+.-.|+||+.++|.|||||+|+.. ....+..-.+||||+|| ++++||.++ |.+|++.+
T Consensus 253 KSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDr----------lleLGfekd----it~Il~~v~~~ 318 (708)
T KOG0348|consen 253 KSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADR----------LLELGFEKD----ITQILKAVHSI 318 (708)
T ss_pred ccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhH----------HHhccchhh----HHHHHHHHhhc
Confidence 99999999999999999999998443 33333445566666666 999999999 88888887
Q ss_pred ----------HHHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEcc---------
Q psy15269 994 ----------NKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKP--------- 1054 (1858)
Q Consensus 994 ----------pk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~--------- 1054 (1858)
|..+|++|- |||+.+.|.+||..-|+||++|..+.
T Consensus 319 ~~~e~~~~~lp~q~q~mLl--------------------------SATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~ 372 (708)
T KOG0348|consen 319 QNAECKDPKLPHQLQNMLL--------------------------SATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKD 372 (708)
T ss_pred cchhcccccccHHHHhHhh--------------------------hhhhHHHHHHHhhccccCceeeeccchhhhcCcch
Confidence 336899998 99999999999999999999998321
Q ss_pred ------------------CCcccEEEEEEECChhhHHHHHHHhhcC-------CcEEEEecChHHHHHHHHHHhhC----
Q psy15269 1055 ------------------SSVHLVKQYLIRTPKSQKIVNLLSFLEG-------KRSLIFVKTYRDASRIISAVQDS---- 1105 (1858)
Q Consensus 1055 ------------------~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~-------~k~IIFvnTk~~ad~L~~~L~~~---- 1105 (1858)
...+.+.|.|..||..-++..|..+|.. .|+|||+.|++.|++-+..|.+.
T Consensus 373 ~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~ 452 (708)
T KOG0348|consen 373 KAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSH 452 (708)
T ss_pred hhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcc
Confidence 0112368999999999999888887753 68999999999999999988742
Q ss_pred ------------------CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChh
Q psy15269 1106 ------------------NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSIN 1167 (1858)
Q Consensus 1106 ------------------g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e 1167 (1858)
+.++..|||+|+ |++|..++..|+..+-.||.||||||||||+|+|.+||+||.|.+++
T Consensus 453 ~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~---QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~a 529 (708)
T KOG0348|consen 453 LEGSSGAPDSEGLPPLFMDLKFYRLHGSME---QEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTA 529 (708)
T ss_pred cccccCCcccCCChhhhhcceEEEecCchh---HHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHH
Confidence 345888999998 99999999999998888999999999999999999999999999999
Q ss_pred hhhhhc------cCcceEEEEecCcccHHHHHHHHHHHhh
Q psy15269 1168 HYVFQI------AGHKEAIAFYDPVADIGLASSLIKLLEY 1201 (1858)
Q Consensus 1168 ~YIHRI------ag~~~aitfvt~~~e~~~l~~Ie~~l~~ 1201 (1858)
+|+||| |.+|.|+.|+.| .|..+++.|++....
T Consensus 530 dylHRvGRTARaG~kG~alLfL~P-~Eaey~~~l~~~~~~ 568 (708)
T KOG0348|consen 530 DYLHRVGRTARAGEKGEALLFLLP-SEAEYVNYLKKHHIM 568 (708)
T ss_pred HHHHHhhhhhhccCCCceEEEecc-cHHHHHHHHHhhcch
Confidence 999999 334499999999 777788888776554
|
|
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=332.37 Aligned_cols=290 Identities=18% Similarity=0.198 Sum_probs=258.2
Q ss_pred cccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhh-hcccccccccccccC
Q psy15269 865 TETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDK-FVRDMRHVSNNILMS 943 (1858)
Q Consensus 865 ~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~-~v~~l~~t~~~ll~~ 943 (1858)
+++...+.++.|+|+||.|+-.....+...+.. +.....||.....+...+.+ ...+++.||+++++-
T Consensus 91 ~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~-----------~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dm 159 (397)
T KOG0327|consen 91 SVKETQALILAPTRELAQQIQKVVRALGDHMDV-----------SVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDM 159 (397)
T ss_pred chHHHHHHHhcchHHHHHHHHHHHHhhhcccce-----------eeeeecCcccchhhhhhhhccCceeecCCchhHHHh
Confidence 356667899999999999998766666555555 33556889888878777777 567899999999984
Q ss_pred cccccccc--ccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccc
Q psy15269 944 PNYESDVN--KYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTS 1021 (1858)
Q Consensus 944 ~~~~~~~~--~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~ 1021 (1858)
-++..+.. ..-+++|+||+ |+..||.++ +.+|++.+|..-|.++|
T Consensus 160 l~~~~l~~~~iKmfvlDEaDE----------mLs~gfkdq----I~~if~~lp~~vQv~l~------------------- 206 (397)
T KOG0327|consen 160 LNRGSLSTDGIKMFVLDEADE----------MLSRGFKDQ----IYDIFQELPSDVQVVLL------------------- 206 (397)
T ss_pred hccccccccceeEEeecchHh----------hhccchHHH----HHHHHHHcCcchhheee-------------------
Confidence 44444333 45667888888 999999999 99999999999999999
Q ss_pred cccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCccc--EEEEEEECChhhHHHHHHHhhcC-CcEEEEecChHHHHHH
Q psy15269 1022 TQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHL--VKQYLIRTPKSQKIVNLLSFLEG-KRSLIFVKTYRDASRI 1098 (1858)
Q Consensus 1022 ~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~--I~Q~~~~v~~~~Kl~~Ll~lL~~-~k~IIFvnTk~~ad~L 1098 (1858)
|||+|.++.+++++||++|+.|.++..+.+. ++|+|+.+.+.+|+..|+++.+. .+.+|||||++.++.+
T Consensus 207 -------SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~~~~q~~if~nt~r~v~~l 279 (397)
T KOG0327|consen 207 -------SATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYRRVTQAVIFCNTRRKVDNL 279 (397)
T ss_pred -------cccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHHhhhcceEEecchhhHHHH
Confidence 9999999999999999999999998776664 99999999999999999998886 8899999999999999
Q ss_pred HHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----
Q psy15269 1099 ISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI----- 1173 (1858)
Q Consensus 1099 ~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI----- 1173 (1858)
...|...++.++++||+|. |.+|..+++.||+|..+|||.||+.|||||+.++++|||||+|.+.++|+||+
T Consensus 280 ~~~L~~~~~~~s~~~~d~~---q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr 356 (397)
T KOG0327|consen 280 TDKLRAHGFTVSAIHGDME---QNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGR 356 (397)
T ss_pred HHHHhhCCceEEEeecccc---hhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccc
Confidence 9999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred -cCcceEEEEecCcccHHHHHHHHHHHhhcCCCCCCC
Q psy15269 1174 -AGHKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTH 1209 (1858)
Q Consensus 1174 -ag~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~ 1209 (1858)
++++.+++|++. .|.+.+++++++++..+.++|..
T Consensus 357 ~grkg~~in~v~~-~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 357 FGRKGVAINFVTE-EDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred cCCCceeeeeehH-hhHHHHHhHHHhcCCcceecccc
Confidence 555599999998 89999999999999999998863
|
|
| >KOG0334|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=359.82 Aligned_cols=313 Identities=19% Similarity=0.249 Sum_probs=270.0
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.+.+++|.+.|.+....+- + +++.-..|+.|+|+||.||.+.+..+.+..-+.. .+++||..+
T Consensus 416 T~af~LPmirhi~dQr~~~--~----gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~-----------v~vygg~~~ 478 (997)
T KOG0334|consen 416 TLAFLLPMIRHIKDQRPLE--E----GDGPIALILAPTRELAMQIHREVRKFLKLLGIRV-----------VCVYGGSGI 478 (997)
T ss_pred chhhhcchhhhhhcCCChh--h----CCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceE-----------EEecCCccH
Confidence 4667788886666555444 1 2455569999999999999999999998866644 567999999
Q ss_pred chhhhhhhhhcccccccccccccCccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHH
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILMSPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAE 999 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQt 999 (1858)
..|+-++.++.++++-||++.+|-.-..+ .-|+-.-+..|.++++||+|++|||.|+ +..|++.++..|||
T Consensus 479 ~~qiaelkRg~eIvV~tpGRmiD~l~~n~-----grvtnlrR~t~lv~deaDrmfdmgfePq----~~~Ii~nlrpdrQt 549 (997)
T KOG0334|consen 479 SQQIAELKRGAEIVVCTPGRMIDILCANS-----GRVTNLRRVTYLVLDEADRMFDMGFEPQ----ITRILQNLRPDRQT 549 (997)
T ss_pred HHHHHHHhcCCceEEeccchhhhhHhhcC-----CccccccccceeeechhhhhheeccCcc----cchHHhhcchhhhh
Confidence 99999999999999999999998332211 1222222335555556666999999999 77799999999999
Q ss_pred HhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCccc--EEEEEEECC-hhhHHHHH
Q psy15269 1000 LLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHL--VKQYLIRTP-KSQKIVNL 1076 (1858)
Q Consensus 1000 LLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~--I~Q~~~~v~-~~~Kl~~L 1076 (1858)
.+| |||+|..++.+|++.|+.|+.|.+...+... +.|.+..|+ +.+|+..|
T Consensus 550 vlf--------------------------Satfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL 603 (997)
T KOG0334|consen 550 VLF--------------------------SATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKL 603 (997)
T ss_pred hhh--------------------------hhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHH
Confidence 999 9999999999999999999999998666554 899999998 89999999
Q ss_pred HHhhcC----CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCC
Q psy15269 1077 LSFLEG----KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFT 1152 (1858)
Q Consensus 1077 l~lL~~----~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp 1152 (1858)
+.+|.. .++||||..+..|+.+.+.|.+.|+.+..|||+.+ |.+|..++++||++.+++||||+++|||||+.
T Consensus 604 ~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~---q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~ 680 (997)
T KOG0334|consen 604 LELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVD---QHDRSSTIEDFKNGVVNLLVATSVVARGLDVK 680 (997)
T ss_pred HHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCc---hHHHHhHHHHHhccCceEEEehhhhhcccccc
Confidence 998864 89999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CcceEEEcCCCCChhhhhhhc-----cCcc-eEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1153 NVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1153 ~V~~VINyDlP~~~e~YIHRI-----ag~~-~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
++.+|||||+|...++|+||+ +|++ .|++|++| ++..+..+|.+.+....+.+|.
T Consensus 681 ~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p-~q~~~a~dl~~al~~~~~~~P~ 741 (997)
T KOG0334|consen 681 ELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITP-DQLKYAGDLCKALELSKQPVPK 741 (997)
T ss_pred cceEEEEcccchhHHHHHHHhcccccCCccceeEEEeCh-HHhhhHHHHHHHHHhccCCCch
Confidence 999999999999999999999 3433 89999999 9999999999999888888885
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=350.16 Aligned_cols=300 Identities=17% Similarity=0.175 Sum_probs=256.8
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|+++.|+.-. ....++++-|+|+||.|+...+..+....+- ++...+.||..++
T Consensus 56 ~a~~lpil~~l~~~~-----------~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~----------~~v~~~~Gg~~~~ 114 (460)
T PRK11776 56 AAFGLGLLQKLDVKR-----------FRVQALVLCPTRELADQVAKEIRRLARFIPN----------IKVLTLCGGVPMG 114 (460)
T ss_pred HHHHHHHHHHhhhcc-----------CCceEEEEeCCHHHHHHHHHHHHHHHhhCCC----------cEEEEEECCCChH
Confidence 346777877774211 1123588999999999999988777654421 2456689999999
Q ss_pred hhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRA 998 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQ 998 (1858)
.|...+.+.+++++.||+++++ ..+.........+|+|||++ |.++||.++ ++.|++.+|+.||
T Consensus 115 ~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~----------~l~~g~~~~----l~~i~~~~~~~~q 180 (460)
T PRK11776 115 PQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR----------MLDMGFQDA----IDAIIRQAPARRQ 180 (460)
T ss_pred HHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH----------HhCcCcHHH----HHHHHHhCCcccE
Confidence 9999999999999999999997 33334455566778888877 999999999 9999999999999
Q ss_pred HHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc-ccEEEEEEECChhhHHHHHH
Q psy15269 999 ELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV-HLVKQYLIRTPKSQKIVNLL 1077 (1858)
Q Consensus 999 tLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~-~~I~Q~~~~v~~~~Kl~~Ll 1077 (1858)
+++| |||+|+.++++++.++++|..+.+..... ..++|+++.++..+|...|.
T Consensus 181 ~ll~--------------------------SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 234 (460)
T PRK11776 181 TLLF--------------------------SATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQ 234 (460)
T ss_pred EEEE--------------------------EecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHH
Confidence 9999 99999999999999999999998865443 34999999999888999888
Q ss_pred HhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCc
Q psy15269 1078 SFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNV 1154 (1858)
Q Consensus 1078 ~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V 1154 (1858)
+++.. .++||||+|++.++.+++.|++.|+.+..+||+|+ |.+|..++++|++|+.+||||||+++||||+|+|
T Consensus 235 ~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~---~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v 311 (460)
T PRK11776 235 RLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLE---QRDRDQVLVRFANRSCSVLVATDVAARGLDIKAL 311 (460)
T ss_pred HHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCC---HHHHHHHHHHHHcCCCcEEEEecccccccchhcC
Confidence 88864 68999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred ceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCCC
Q psy15269 1155 EQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKH 1205 (1858)
Q Consensus 1155 ~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ 1205 (1858)
++|||||+|.+++.|+||+ +| .+.+++|+++ +|...++.|++.++.....
T Consensus 312 ~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~-~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 312 EAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAP-EEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred CeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEch-hHHHHHHHHHHHhCCCCce
Confidence 9999999999999999999 22 2389999998 8888999999998876553
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=345.91 Aligned_cols=306 Identities=17% Similarity=0.149 Sum_probs=255.8
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|++..|.+..... +.- .....+++|-|+|+||.|+-..+..+.....+ +..++.||....
T Consensus 60 la~llp~l~~l~~~~~~~---~~~-~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~-----------~v~~~~gg~~~~ 124 (423)
T PRK04837 60 MAFLTATFHYLLSHPAPE---DRK-VNQPRALIMAPTRELAVQIHADAEPLAQATGL-----------KLGLAYGGDGYD 124 (423)
T ss_pred HHHHHHHHHHHHhccccc---ccc-cCCceEEEECCcHHHHHHHHHHHHHHhccCCc-----------eEEEEECCCCHH
Confidence 346778887776532211 000 12345799999999999998887777666554 346678998888
Q ss_pred hhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHH--H
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNK--F 996 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk--~ 996 (1858)
.+...+++.+++++.||+++++ .....+......+|+||||+ |.++||..+ ++.|++.++. .
T Consensus 125 ~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~----------l~~~~f~~~----i~~i~~~~~~~~~ 190 (423)
T PRK04837 125 KQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADR----------MFDLGFIKD----IRWLFRRMPPANQ 190 (423)
T ss_pred HHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHH----------HhhcccHHH----HHHHHHhCCCccc
Confidence 8888888889999999999986 34445556677788888887 899999999 9999999984 5
Q ss_pred HHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc--ccEEEEEEECChhhHHH
Q psy15269 997 RAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV--HLVKQYLIRTPKSQKIV 1074 (1858)
Q Consensus 997 RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~--~~I~Q~~~~v~~~~Kl~ 1074 (1858)
|++++| |||++..+.+++..++.+|..+.+..... ..+++.++.....+|..
T Consensus 191 ~~~~l~--------------------------SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~ 244 (423)
T PRK04837 191 RLNMLF--------------------------SATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMR 244 (423)
T ss_pred eeEEEE--------------------------eccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHH
Confidence 667888 99999999999999999999998865443 34888888888888988
Q ss_pred HHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCC
Q psy15269 1075 NLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDF 1151 (1858)
Q Consensus 1075 ~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDI 1151 (1858)
.|..++.. .++||||+|++.|+.+++.|.+.|+++..+||+|+ +++|..++++|++|+++||||||+++|||||
T Consensus 245 ~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~---~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDi 321 (423)
T PRK04837 245 LLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVA---QKKRLRILEEFTRGDLDILVATDVAARGLHI 321 (423)
T ss_pred HHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCC---hhHHHHHHHHHHcCCCcEEEEechhhcCCCc
Confidence 88888764 78999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCcceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCCC
Q psy15269 1152 TNVEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKH 1205 (1858)
Q Consensus 1152 p~V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ 1205 (1858)
|+|++|||||+|.++++|+||+ +| .|.+|+|+++ +|...+..|+++++.....
T Consensus 322 p~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~-~~~~~~~~i~~~~~~~~~~ 380 (423)
T PRK04837 322 PAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE-EYALNLPAIETYIGHSIPV 380 (423)
T ss_pred cccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCH-HHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999999 22 3389999998 8888899999988776543
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=351.95 Aligned_cols=311 Identities=21% Similarity=0.266 Sum_probs=262.5
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|+|.++..+....+- ......+.++-|+|+||.|+-..+..+.++.++ +..+++||..+.
T Consensus 173 layllPil~~l~~~~~~~~~----~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~-----------~~~~~~gG~~~~ 237 (518)
T PLN00206 173 ASFLVPIISRCCTIRSGHPS----EQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPF-----------KTALVVGGDAMP 237 (518)
T ss_pred HHHHHHHHHHHHhhcccccc----ccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCc-----------eEEEEECCcchH
Confidence 44778888877655432210 013345799999999999998888877777665 457789999988
Q ss_pred hhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRA 998 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQ 998 (1858)
.|...+.++++++++||+++++ .+..........+|+||||+ |.++||.++ +.+|+..++ .+|
T Consensus 238 ~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~----------ml~~gf~~~----i~~i~~~l~-~~q 302 (518)
T PLN00206 238 QQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDC----------MLERGFRDQ----VMQIFQALS-QPQ 302 (518)
T ss_pred HHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHH----------HhhcchHHH----HHHHHHhCC-CCc
Confidence 8888888899999999999986 34444555666777888877 999999999 999998886 578
Q ss_pred HHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcc--cEEEEEEECChhhHHHHH
Q psy15269 999 ELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVH--LVKQYLIRTPKSQKIVNL 1076 (1858)
Q Consensus 999 tLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~--~I~Q~~~~v~~~~Kl~~L 1076 (1858)
+++| |||+|++++++++.++++|+.|.+...... .++|.++.++..+|...|
T Consensus 303 ~l~~--------------------------SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l 356 (518)
T PLN00206 303 VLLF--------------------------SATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKL 356 (518)
T ss_pred EEEE--------------------------EeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHH
Confidence 8888 999999999999999999999988755433 388988888888888888
Q ss_pred HHhhcC-----CcEEEEecChHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCC
Q psy15269 1077 LSFLEG-----KRSLIFVKTYRDASRIISAVQD-SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGND 1150 (1858)
Q Consensus 1077 l~lL~~-----~k~IIFvnTk~~ad~L~~~L~~-~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLD 1150 (1858)
+.++.. .++||||+|+..++.+++.|.. .|+.+..+||+|+ |.+|..++++|++|+++||||||+++||||
T Consensus 357 ~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~---~~eR~~il~~Fr~G~~~ILVaTdvl~rGiD 433 (518)
T PLN00206 357 FDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKS---MKERREVMKSFLVGEVPVIVATGVLGRGVD 433 (518)
T ss_pred HHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCC---HHHHHHHHHHHHCCCCCEEEEecHhhccCC
Confidence 887753 5799999999999999999985 6999999999999 999999999999999999999999999999
Q ss_pred CCCcceEEEcCCCCChhhhhhhcc-----C-cceEEEEecCcccHHHHHHHHHHHhhcCCCCCCCcc
Q psy15269 1151 FTNVEQVIIYNLPLSINHYVFQIA-----G-HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTHPH 1211 (1858)
Q Consensus 1151 Ip~V~~VINyDlP~~~e~YIHRIa-----g-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~~ 1211 (1858)
+|+|++|||||+|.++++|+||+| | .|.+++|+++ ++...+.++.+.++...+.+|+++.
T Consensus 434 ip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~-~~~~~~~~l~~~l~~~~~~vp~~l~ 499 (518)
T PLN00206 434 LLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNE-EDRNLFPELVALLKSSGAAIPRELA 499 (518)
T ss_pred cccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEch-hHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 999999999999999999999992 2 2389999998 8889999999999999999997443
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=344.57 Aligned_cols=304 Identities=17% Similarity=0.187 Sum_probs=257.4
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|+|+.|..-+... .+ .....+++|.|+|+||.|+...+..+....++ +...++||....
T Consensus 53 la~~lpil~~l~~~~~~~--~~---~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~-----------~~~~~~gg~~~~ 116 (456)
T PRK10590 53 AGFTLPLLQHLITRQPHA--KG---RRPVRALILTPTRELAAQIGENVRDYSKYLNI-----------RSLVVFGGVSIN 116 (456)
T ss_pred HHHHHHHHHHhhhccccc--cc---CCCceEEEEeCcHHHHHHHHHHHHHHhccCCC-----------EEEEEECCcCHH
Confidence 447778887775432211 01 12234689999999999999998877655443 567789999988
Q ss_pred hhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRA 998 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQ 998 (1858)
.+...+....+++++||.++++ ............+|+|||++ |.++||..+ ++.|+..+++.+|
T Consensus 117 ~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~----------ll~~~~~~~----i~~il~~l~~~~q 182 (456)
T PRK10590 117 PQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR----------MLDMGFIHD----IRRVLAKLPAKRQ 182 (456)
T ss_pred HHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH----------HhccccHHH----HHHHHHhCCccCe
Confidence 8888888888999999999986 34444556667777888877 899999999 9999999999999
Q ss_pred HHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCC--cccEEEEEEECChhhHHHHH
Q psy15269 999 ELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSS--VHLVKQYLIRTPKSQKIVNL 1076 (1858)
Q Consensus 999 tLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~--~~~I~Q~~~~v~~~~Kl~~L 1076 (1858)
+++| |||++.++.+++..++.+|..+.+.... ...+.|.+..++..+|...|
T Consensus 183 ~l~~--------------------------SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 236 (456)
T PRK10590 183 NLLF--------------------------SATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELL 236 (456)
T ss_pred EEEE--------------------------eCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHH
Confidence 9999 9999999999999999999988775433 34488999899988888888
Q ss_pred HHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCC
Q psy15269 1077 LSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTN 1153 (1858)
Q Consensus 1077 l~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~ 1153 (1858)
..++.. .++||||+|++.++.+++.|++.|+.+..+||+|+ |.+|.+++++|++|+++||||||+++||||||+
T Consensus 237 ~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~---~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~ 313 (456)
T PRK10590 237 SQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKS---QGARTRALADFKSGDIRVLVATDIAARGLDIEE 313 (456)
T ss_pred HHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCC---HHHHHHHHHHHHcCCCcEEEEccHHhcCCCccc
Confidence 777764 68999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCC
Q psy15269 1154 VEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNK 1204 (1858)
Q Consensus 1154 V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q 1204 (1858)
|++|||||+|.++++|+||+ ++ .+.+++|+++ +|..+++.|++.++....
T Consensus 314 v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~-~d~~~~~~ie~~l~~~~~ 369 (456)
T PRK10590 314 LPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCV-DEHKLLRDIEKLLKKEIP 369 (456)
T ss_pred CCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecH-HHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999 22 2389999998 899999999999887653
|
|
| >KOG0337|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=325.10 Aligned_cols=302 Identities=20% Similarity=0.200 Sum_probs=265.1
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
...+++|.++.|...- ..+.-..++.|+|+||+|.=....-+.+|..+ ++.+.+||..+
T Consensus 72 taaf~ipm~e~Lk~~s----------~~g~RalilsptreLa~qtlkvvkdlgrgt~l-----------r~s~~~ggD~~ 130 (529)
T KOG0337|consen 72 TAAFLIPMIEKLKSHS----------QTGLRALILSPTRELALQTLKVVKDLGRGTKL-----------RQSLLVGGDSI 130 (529)
T ss_pred hhhHHHHHHHHHhhcc----------ccccceeeccCcHHHHHHHHHHHHHhccccch-----------hhhhhcccchH
Confidence 3457788888876654 12334578999999999999999999999988 66899999999
Q ss_pred chhhhhhhhhcccccccccccccCccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHH
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILMSPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAE 999 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQt 999 (1858)
+.|+.-+....|+++|||++++...--. .+-|.+| ||.+||+||.+++|||+++ +.+|+..+|..|||
T Consensus 131 eeqf~~l~~npDii~ATpgr~~h~~vem------~l~l~sv--eyVVfdEadrlfemgfqeq----l~e~l~rl~~~~QT 198 (529)
T KOG0337|consen 131 EEQFILLNENPDIIIATPGRLLHLGVEM------TLTLSSV--EYVVFDEADRLFEMGFQEQ----LHEILSRLPESRQT 198 (529)
T ss_pred HHHHHHhccCCCEEEecCceeeeeehhe------eccccce--eeeeehhhhHHHhhhhHHH----HHHHHHhCCCcceE
Confidence 9999999999999999999999633211 1234555 6666777777999999999 99999999999999
Q ss_pred HhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEc--cCCcccEEEEEEECChhhHHHHHH
Q psy15269 1000 LLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVK--PSSVHLVKQYLIRTPKSQKIVNLL 1077 (1858)
Q Consensus 1000 LLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~--~~~~~~I~Q~~~~v~~~~Kl~~Ll 1077 (1858)
++| |||.|..+-++++..+.+|+.|.++ .+-.+.++..+..+++.+|...|+
T Consensus 199 llf--------------------------Satlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl 252 (529)
T KOG0337|consen 199 LLF--------------------------SATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALL 252 (529)
T ss_pred EEE--------------------------eccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHH
Confidence 999 9999999999999999999888754 444455888999999999999999
Q ss_pred HhhcC----CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCC
Q psy15269 1078 SFLEG----KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTN 1153 (1858)
Q Consensus 1078 ~lL~~----~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~ 1153 (1858)
+++.+ +++||||.|+..|+++...|+..|+.+..+.|.|+ |..|...+.+|+.++..+||.||+||||+|||-
T Consensus 253 ~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD---~~aRk~~~~~F~~~k~~~lvvTdvaaRG~dipl 329 (529)
T KOG0337|consen 253 SILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLD---QEARKINGRDFRGRKTSILVVTDVAARGLDIPL 329 (529)
T ss_pred HHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccC---hHhhhhccccccCCccceEEEehhhhccCCCcc
Confidence 99875 58999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCC
Q psy15269 1154 VEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNK 1204 (1858)
Q Consensus 1154 V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q 1204 (1858)
.+.|||||+|.+..-|+||+ || .+++++||.+ +|..++-+|..++++...
T Consensus 330 ldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~-~~~~yl~DL~lflgr~~~ 385 (529)
T KOG0337|consen 330 LDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVAS-TDDPYLLDLQLFLGRPLI 385 (529)
T ss_pred ccccccccCCCCCceEEEEecchhhccccceEEEEEec-ccchhhhhhhhhcCCcee
Confidence 99999999999999999999 45 4499999999 889999999999988544
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.3e-32 Score=343.78 Aligned_cols=308 Identities=18% Similarity=0.171 Sum_probs=254.3
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.+-+++|+++.|..-.... .. ......+.+|-|+|+||.|+-..+..+.....+ +...++||..+
T Consensus 60 Tlafllpil~~l~~~~~~~---~~-~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i-----------~v~~l~Gg~~~ 124 (572)
T PRK04537 60 TLAFLVAVMNRLLSRPALA---DR-KPEDPRALILAPTRELAIQIHKDAVKFGADLGL-----------RFALVYGGVDY 124 (572)
T ss_pred HHHHHHHHHHHHHhccccc---cc-ccCCceEEEEeCcHHHHHHHHHHHHHHhccCCc-----------eEEEEECCCCH
Confidence 3456777777765422111 11 012345799999999999998887766655443 55778999998
Q ss_pred chhhhhhhhhcccccccccccccC--c-cccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHH-
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILMS--P-NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNK- 995 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~~--~-~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk- 995 (1858)
..+...+.+..++++.||+++++. . ..........+|+|||++ |.++||..+ ++.|++.+++
T Consensus 125 ~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~----------lld~gf~~~----i~~il~~lp~~ 190 (572)
T PRK04537 125 DKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADR----------MFDLGFIKD----IRFLLRRMPER 190 (572)
T ss_pred HHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHH----------HhhcchHHH----HHHHHHhcccc
Confidence 888887888899999999999862 2 233344555677777777 899999999 9999999987
Q ss_pred -HHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc--ccEEEEEEECChhhH
Q psy15269 996 -FRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV--HLVKQYLIRTPKSQK 1072 (1858)
Q Consensus 996 -~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~--~~I~Q~~~~v~~~~K 1072 (1858)
.||+++| |||++..+.+++..++.+|..+.+..... ..+.|.++.+...+|
T Consensus 191 ~~~q~ll~--------------------------SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k 244 (572)
T PRK04537 191 GTRQTLLF--------------------------SATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEK 244 (572)
T ss_pred cCceEEEE--------------------------eCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHH
Confidence 6889999 99999999999999999998887754433 348899988888899
Q ss_pred HHHHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCC
Q psy15269 1073 IVNLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGN 1149 (1858)
Q Consensus 1073 l~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGL 1149 (1858)
+..|+.++.. .++||||+|++.|+.+++.|.+.|+.+..+||+|+ +.+|.+++++|++|+++||||||+++|||
T Consensus 245 ~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~---~~eR~~il~~Fr~G~~~VLVaTdv~arGI 321 (572)
T PRK04537 245 QTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVP---QKKRESLLNRFQKGQLEILVATDVAARGL 321 (572)
T ss_pred HHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCC---HHHHHHHHHHHHcCCCeEEEEehhhhcCC
Confidence 9988888764 78999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCCcceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCCCC
Q psy15269 1150 DFTNVEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKHV 1206 (1858)
Q Consensus 1150 DIp~V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~i 1206 (1858)
||++|++|||||+|.++++|+||+ +| .+.+|+|+++ .+...+.+|++.++.++...
T Consensus 322 Dip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~-~~~~~l~~i~~~~~~~~~~~ 383 (572)
T PRK04537 322 HIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACE-RYAMSLPDIEAYIEQKIPVE 383 (572)
T ss_pred CccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecH-HHHHHHHHHHHHHcCCCCcc
Confidence 999999999999999999999999 22 2389999998 78888999999887765443
|
|
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=305.60 Aligned_cols=281 Identities=15% Similarity=0.128 Sum_probs=231.8
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccc-cCCchhhhhhhhhcccccccccccccCc---c
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAG-LEPSTAIIDIDKFVRDMRHVSNNILMSP---N 945 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG-~~~~~q~~dl~~~v~~l~~t~~~ll~~~---~ 945 (1858)
.++-|.|||+||.|+|.-.-.|.....++- .+ .+.|+ ...|.. -.-.+++.||+.++|.. .
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita-----~y-----air~sk~~rG~~-----i~eqIviGTPGtv~Dlm~klk 226 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTA-----SY-----AIRGSKAKRGNK-----LTEQIVIGTPGTVLDLMLKLK 226 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeE-----EE-----EecCcccccCCc-----chhheeeCCCccHHHHHHHHH
Confidence 346679999999999999999888774422 11 12222 111111 01236899999999833 3
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
-....+..-++||+||- |+-+.||+++ --.|+..+|+.-|-++|
T Consensus 227 ~id~~kikvfVlDEAD~---------Mi~tqG~~D~----S~rI~~~lP~~~QllLF----------------------- 270 (477)
T KOG0332|consen 227 CIDLEKIKVFVLDEADV---------MIDTQGFQDQ----SIRIMRSLPRNQQLLLF----------------------- 270 (477)
T ss_pred hhChhhceEEEecchhh---------hhhccccccc----chhhhhhcCCcceEEee-----------------------
Confidence 34555667788999955 5666899999 78899999999999999
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcc--cEEEEEEECCh-hhHHHHHHHhhc---CCcEEEEecChHHHHHHH
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSSVH--LVKQYLIRTPK-SQKIVNLLSFLE---GKRSLIFVKTYRDASRII 1099 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~--~I~Q~~~~v~~-~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~ 1099 (1858)
|||+-+.+.++|.+.++||..+.++.+..+ +|+|+|+.|+. .+|++.|..+.. -+++||||.||++|..|+
T Consensus 271 ---SATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~ 347 (477)
T KOG0332|consen 271 ---SATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLY 347 (477)
T ss_pred ---echhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHH
Confidence 999999999999999999988888766544 59999999974 567777766543 489999999999999999
Q ss_pred HHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCC------Chhhhhhhc
Q psy15269 1100 SAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPL------SINHYVFQI 1173 (1858)
Q Consensus 1100 ~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~------~~e~YIHRI 1173 (1858)
..|+..|+.+..+||+|. -.+|.+++++||.|+.+|||+|+|.|||||++.|++|||||+|. |+++|+|||
T Consensus 348 ~~m~~~Gh~V~~l~G~l~---~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRi 424 (477)
T KOG0332|consen 348 EEMRAEGHQVSLLHGDLT---VEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRI 424 (477)
T ss_pred HHHHhcCceeEEeeccch---hHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHh
Confidence 999999999999999999 99999999999999999999999999999999999999999995 679999999
Q ss_pred ------cCcceEEEEecCcccHHHHHHHHHHHhhcCCCCC
Q psy15269 1174 ------AGHKEAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207 (1858)
Q Consensus 1174 ------ag~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip 1207 (1858)
|++|.||+|+...+...++..|+++++.....+.
T Consensus 425 GRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~ 464 (477)
T KOG0332|consen 425 GRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLD 464 (477)
T ss_pred cccccccccceEEEeecccCcHHHHHHHHHHHhhcceecC
Confidence 4555899999987888999999999988766544
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-31 Score=326.83 Aligned_cols=302 Identities=16% Similarity=0.210 Sum_probs=253.6
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|+|..|.++.+.- .....++++-|+|+||.|+-+.+..+.....+ +...+.||..+.
T Consensus 53 ~~~~lp~l~~l~~~~~~~-------~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~-----------~v~~~~gg~~~~ 114 (434)
T PRK11192 53 AAFLLPALQHLLDFPRRK-------SGPPRILILTPTRELAMQVADQARELAKHTHL-----------DIATITGGVAYM 114 (434)
T ss_pred HHHHHHHHHHHhhccccC-------CCCceEEEECCcHHHHHHHHHHHHHHHccCCc-----------EEEEEECCCCHH
Confidence 446788888887653322 12335699999999999999988888776655 346678999988
Q ss_pred hhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRA 998 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQ 998 (1858)
.+...+....+++++||+++++ ..+.........+|+|||++ |.++||..+ ++.|...++..+|
T Consensus 115 ~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~----------~l~~~~~~~----~~~i~~~~~~~~q 180 (434)
T PRK11192 115 NHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADR----------MLDMGFAQD----IETIAAETRWRKQ 180 (434)
T ss_pred HHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHH----------HhCCCcHHH----HHHHHHhCccccE
Confidence 8887787788999999999986 22333334456677888877 999999999 9999999999999
Q ss_pred HHhhhccCCCCcccccccccccccccccCCCCCCcH-hHHHHHHHhcCCCEEEEEccCCc--ccEEEEEEECC-hhhHHH
Q psy15269 999 ELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWG-DIEEESNIEVEDPIMKLVKPSSV--HLVKQYLIRTP-KSQKIV 1074 (1858)
Q Consensus 999 tLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~-~I~~la~~~L~dpv~I~v~~~~~--~~I~Q~~~~v~-~~~Kl~ 1074 (1858)
+++| |||++. .+.++++.++++|+.+.+..... ..+.|.++.++ ...|..
T Consensus 181 ~~~~--------------------------SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~ 234 (434)
T PRK11192 181 TLLF--------------------------SATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTA 234 (434)
T ss_pred EEEE--------------------------EeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHH
Confidence 9999 999985 59999999999999998765443 34888888776 467888
Q ss_pred HHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCC
Q psy15269 1075 NLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDF 1151 (1858)
Q Consensus 1075 ~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDI 1151 (1858)
.|.++++. .++||||+|++.++.+++.|++.|+.+..+||+|+ |.+|..++++|++|+++||||||+++||||+
T Consensus 235 ~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~---~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDi 311 (434)
T PRK11192 235 LLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMV---QAKRNEAIKRLTDGRVNVLVATDVAARGIDI 311 (434)
T ss_pred HHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCC---HHHHHHHHHHHhCCCCcEEEEccccccCccC
Confidence 88888864 78999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCcceEEEcCCCCChhhhhhhcc-----C-cceEEEEecCcccHHHHHHHHHHHhhcCC
Q psy15269 1152 TNVEQVIIYNLPLSINHYVFQIA-----G-HKEAIAFYDPVADIGLASSLIKLLEYSNK 1204 (1858)
Q Consensus 1152 p~V~~VINyDlP~~~e~YIHRIa-----g-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q 1204 (1858)
|+|++|||||+|.+.+.|+||+| | .+.+++|++. .|..++..|++++.....
T Consensus 312 p~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~-~d~~~~~~i~~~~~~~~~ 369 (434)
T PRK11192 312 DDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEA-HDHLLLGKIERYIEEPLK 369 (434)
T ss_pred CCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecH-HHHHHHHHHHHHHhcccc
Confidence 99999999999999999999992 2 2379999997 889999999998876543
|
|
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-32 Score=326.11 Aligned_cols=327 Identities=16% Similarity=0.172 Sum_probs=246.1
Q ss_pred HHHHHHHHHHHhhhccccccccccccCc--cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 842 RYFLAILPLLDSLNQLLPMQGNYTETNS--FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 842 ~~l~~LL~~Ld~~n~~~P~~~~~~~~~~--~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
-+-+|+++-|++..-+--+..+...... ..+++.|||+||.||=+|+......+.++. ..++||+..
T Consensus 235 AFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v-----------~si~GGLav 303 (731)
T KOG0347|consen 235 AFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRV-----------ASITGGLAV 303 (731)
T ss_pred eecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEE-----------EEeechhHH
Confidence 3556666655544433322222211111 469999999999999999999988887744 667999999
Q ss_pred chhhhhhhhhccccccccccccc--Ccc---ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhH
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILM--SPN---YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVN 994 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~--~~~---~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lp 994 (1858)
..|++=|....++++|||||+.. .+. -.+.....-+|+||+|| |.+-|.-.+ +..|++.|.
T Consensus 304 qKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDR----------mvekghF~E----ls~lL~~L~ 369 (731)
T KOG0347|consen 304 QKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADR----------MVEKGHFEE----LSKLLKHLN 369 (731)
T ss_pred HHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHH----------HhhhccHHH----HHHHHHHhh
Confidence 99999999999999999999983 222 22333455567999999 999999899 777777665
Q ss_pred -----HHHHHHhhhcc-CCCCcccccccccccccccccCCCCCCcHhHHHHHHH--hcCCCEEEEEccCCccc--EEEEE
Q psy15269 995 -----KFRAELLSAVS-NAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNI--EVEDPIMKLVKPSSVHL--VKQYL 1064 (1858)
Q Consensus 995 -----k~RQtLLf~~~-~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~--~L~dpv~I~v~~~~~~~--I~Q~~ 1064 (1858)
+.||||.|... .-.-.......+.. ... ..+....|+.+.++ |-.+|..|.+.+...+. +....
T Consensus 370 e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~-----~~k-~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~ 443 (731)
T KOG0347|consen 370 EEQKNRQRQTLVFSATLTLVLQQPLSSSRKK-----KDK-EDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESL 443 (731)
T ss_pred hhhcccccceEEEEEEeehhhcChhHHhhhc-----cch-hhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHh
Confidence 57899999100 00000000000000 000 02233445555543 23478888887665443 77777
Q ss_pred EECChhhHHHHHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEec
Q psy15269 1065 IRTPKSQKIVNLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMT 1142 (1858)
Q Consensus 1065 ~~v~~~~Kl~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVAT 1142 (1858)
+.|+..+|--.|+.||.. +++|||||+.+.+.+|+-+|+..+++...||..|. |.+|.+.|++|++....|||||
T Consensus 444 I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~---QKqRLknLEkF~~~~~~VLiaT 520 (731)
T KOG0347|consen 444 IECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMI---QKQRLKNLEKFKQSPSGVLIAT 520 (731)
T ss_pred hcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHH---HHHHHHhHHHHhcCCCeEEEee
Confidence 889999999999999876 89999999999999999999999999999999999 9999999999999999999999
Q ss_pred cccccCCCCCCcceEEEcCCCCChhhhhhhc-----cCcc-eEEEEecCcccHHHHHHHHHHHhhcC
Q psy15269 1143 LSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSN 1203 (1858)
Q Consensus 1143 DVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag~~-~aitfvt~~~e~~~l~~Ie~~l~~~~ 1203 (1858)
||||||||||+|+|||||.+|++.+-||||. |+.. .++.|+.| .|...++.|-+-+++..
T Consensus 521 DVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P-~e~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 521 DVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGP-QEVGPLKKLCKTLKKKE 586 (731)
T ss_pred hhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeCh-HHhHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999998 3333 78889999 78888888888887643
|
|
| >KOG1427|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-31 Score=293.95 Aligned_cols=300 Identities=26% Similarity=0.400 Sum_probs=247.7
Q ss_pred cccceeeCCeEEEEcCCCCCCCCcCCCCCcccccccCCCC--CeEEEEEcCCEEEEEecCCcEEEEccc---ccCCCCCC
Q psy15269 180 DTDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPS--NIRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLANTT 254 (1858)
Q Consensus 180 ~t~~a~s~g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~--~IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~~ 254 (1858)
|+.....+++.|.||.|..||||+++......|+.++... +|++.+||.+||++|+++|+||+||.| |+|+++..
T Consensus 69 H~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~ 148 (443)
T KOG1427|consen 69 HCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAK 148 (443)
T ss_pred hEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccc
Confidence 4445568999999999999999999888888999998775 589999999999999999999999987 88888754
Q ss_pred CCC-CceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcc--------------cccceeeecCC
Q psy15269 255 IQP-LPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLS--------------QRRPKLIMGGL 319 (1858)
Q Consensus 255 ~~~-~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~--------------~~~P~~V~~~l 319 (1858)
..- .|..+... ...|..|+||..+++.|+..+.+.++|.-.|||||+++... +..|..|. .+
T Consensus 149 ~~v~s~~~~~~~--~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~-~~ 225 (443)
T KOG1427|consen 149 NEVESTPLPCVV--SDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIA-SL 225 (443)
T ss_pred cccccCCCcccc--CccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccc-cc
Confidence 321 22222111 22455677999999999999999999999999999987542 23455555 37
Q ss_pred CCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCC----ceEEeecCceEEEEEcCCCEEE
Q psy15269 320 YGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSD----VGAVSCGESHTLVLSQDGHTVW 395 (1858)
Q Consensus 320 ~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~----I~~IAcG~~HTlaLt~dG~tVy 395 (1858)
.+..|++++||.+|++|++++++||+||.+.||+||+...++...|++++.+.. -.++.||+..++++.+-|. +|
T Consensus 226 dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~-Lf 304 (443)
T KOG1427|consen 226 DGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQ-LF 304 (443)
T ss_pred cceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccce-eE
Confidence 888999999999999999999999999999999999999988899998876542 5789999999999999995 99
Q ss_pred EEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEe-------CCCCCCCccccccEEecC
Q psy15269 396 SMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG-------LGLRSSSISFHTPVLVTG 468 (1858)
Q Consensus 396 sWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WG-------LG~gss~~~~~~P~~V~~ 468 (1858)
.||.+.. +......|+.+..+.+-++..+-||+.|.+ +..|.....|| +|.+........|+.++.
T Consensus 305 ~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~-v~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~ 377 (443)
T KOG1427|consen 305 MWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHF-VGADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDM 377 (443)
T ss_pred Eeecccc------CcccccCCCchhhcCCccCCCcCccceeee-ecccccccccccccccccccCccccccccCccccch
Confidence 9998763 223456788888888888999999988754 56677888999 555555556678999999
Q ss_pred CCCCCEEEEEEcCceEEEEEeC
Q psy15269 469 LSSHQIVDVSIGDSHVLALSQY 490 (1858)
Q Consensus 469 l~~~~Iv~Ia~G~~HtlALt~d 490 (1858)
+.+.+|-+|++|..|+++|.++
T Consensus 378 l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 378 LEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred hcceeccceeeccceEEEEEcc
Confidence 9999999999999999999764
|
|
| >KOG0346|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-29 Score=290.77 Aligned_cols=308 Identities=17% Similarity=0.214 Sum_probs=248.0
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.+.+|+|||+.|=.--..- ..+......|+-|+|+||.|+=..+..+.. .|.+-++..=+..-+..
T Consensus 70 T~AYliPllqkll~~k~t~-----~~e~~~sa~iLvPTkEL~qQvy~viekL~~---------~c~k~lr~~nl~s~~sd 135 (569)
T KOG0346|consen 70 TAAYLIPLLQKLLAEKKTN-----DGEQGPSAVILVPTKELAQQVYKVIEKLVE---------YCSKDLRAINLASSMSD 135 (569)
T ss_pred hHHHHHHHHHHHHHhhhcc-----cccccceeEEEechHHHHHHHHHHHHHHHH---------HHHHhhhhhhhhcccch
Confidence 4568889988874433322 224555668999999999998766555433 23333333333333333
Q ss_pred chhhhhhhhhcccccccccccccCccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHH
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILMSPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAE 999 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQt 999 (1858)
.....-|.+..+++++||++++........ ..+|.+ .|.+.|+||+|+.-||+++ +..|.+.||+.-|.
T Consensus 136 sv~~~~L~d~pdIvV~TP~~ll~~~~~~~~-----~~~~~l--~~LVvDEADLllsfGYeed----lk~l~~~LPr~~Q~ 204 (569)
T KOG0346|consen 136 SVNSVALMDLPDIVVATPAKLLRHLAAGVL-----EYLDSL--SFLVVDEADLLLSFGYEED----LKKLRSHLPRIYQC 204 (569)
T ss_pred HHHHHHHccCCCeEEeChHHHHHHHhhccc-----hhhhhe--eeEEechhhhhhhcccHHH----HHHHHHhCCchhhh
Confidence 333455556778999999999975443321 345555 5667777889999999999 99999999999999
Q ss_pred HhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcc---cEEEEEEECChhhHHHHH
Q psy15269 1000 LLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVH---LVKQYLIRTPKSQKIVNL 1076 (1858)
Q Consensus 1000 LLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~---~I~Q~~~~v~~~~Kl~~L 1076 (1858)
+|- |||..++|+.+.+.+|+||+.+.+...+.. .+.|+++.|.+.+|+..+
T Consensus 205 ~Lm--------------------------SATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 205 FLM--------------------------SATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred eee--------------------------hhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 998 999999999999999999999988765544 399999999999999999
Q ss_pred HHhhcC----CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc---------
Q psy15269 1077 LSFLEG----KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL--------- 1143 (1858)
Q Consensus 1077 l~lL~~----~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD--------- 1143 (1858)
+.+++- +|+|||+||.+++-+|--+|++.|++...+.|.|+ +..|..++++|..|-.+|+||||
T Consensus 259 yallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP---~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~e 335 (569)
T KOG0346|consen 259 YALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELP---ANSRCHIIEQFNKGLYDIVIATDDSADGDKLE 335 (569)
T ss_pred HHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhccccc---ccchhhHHHHhhCcceeEEEEccCccchhhhh
Confidence 888763 89999999999999999999999999999999999 99999999999999999999999
Q ss_pred --------------------------ccccCCCCCCcceEEEcCCCCChhhhhhhc-----cCcc-eEEEEecCcccHHH
Q psy15269 1144 --------------------------SDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGL 1191 (1858)
Q Consensus 1144 --------------------------VAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag~~-~aitfvt~~~e~~~ 1191 (1858)
-++|||||.+|..|||||+|.+++.||||+ |++. .+++|+.| .+..-
T Consensus 336 ee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P-~e~~g 414 (569)
T KOG0346|consen 336 EEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSP-KEEFG 414 (569)
T ss_pred ccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecc-hHHhh
Confidence 246999999999999999999999999999 3333 99999999 66665
Q ss_pred HHHHHHHHhhc
Q psy15269 1192 ASSLIKLLEYS 1202 (1858)
Q Consensus 1192 l~~Ie~~l~~~ 1202 (1858)
...|+..+...
T Consensus 415 ~~~le~~~~d~ 425 (569)
T KOG0346|consen 415 KESLESILKDE 425 (569)
T ss_pred hhHHHHHHhhH
Confidence 57777777664
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=310.10 Aligned_cols=285 Identities=18% Similarity=0.205 Sum_probs=240.8
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhh-hccccccccccccc--Ccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDK-FVRDMRHVSNNILM--SPN 945 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~-~v~~l~~t~~~ll~--~~~ 945 (1858)
..+++|-|+|+||.|+-+.+..+.....+ +...+.||.....+..++.+ ..++++.||.++++ ...
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~-----------~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~ 231 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGL-----------NVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG 231 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCC-----------EEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC
Confidence 45689999999999998888777654433 44667899888888888875 68899999999986 222
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHH--HHHHHhhhccCCCCcccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNK--FRAELLSAVSNAPSFDDNNVSMGVTSTQ 1023 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk--~RQtLLf~~~~~~s~~~~~~s~~~~~~~ 1023 (1858)
.........+|+||+++ +.++||.++ ++.|++.++. .+|.+++
T Consensus 232 ~~~l~~l~~lViDEah~----------l~~~~~~~~----l~~i~~~~~~~~~~q~i~~--------------------- 276 (475)
T PRK01297 232 EVHLDMVEVMVLDEADR----------MLDMGFIPQ----VRQIIRQTPRKEERQTLLF--------------------- 276 (475)
T ss_pred CcccccCceEEechHHH----------HHhcccHHH----HHHHHHhCCCCCCceEEEE---------------------
Confidence 33344455666777766 889999999 9999998875 4688888
Q ss_pred cccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc--ccEEEEEEECChhhHHHHHHHhhcC---CcEEEEecChHHHHHH
Q psy15269 1024 HNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV--HLVKQYLIRTPKSQKIVNLLSFLEG---KRSLIFVKTYRDASRI 1098 (1858)
Q Consensus 1024 ~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~--~~I~Q~~~~v~~~~Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L 1098 (1858)
|||++..+.++++.++.+|..+.+..... ..+.|.++.+...+|...|.+++.. .++||||++++.++.+
T Consensus 277 -----SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l 351 (475)
T PRK01297 277 -----SATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRI 351 (475)
T ss_pred -----EeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHH
Confidence 99999999999999999999987765443 3478888888888888888887764 6899999999999999
Q ss_pred HHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc---cC
Q psy15269 1099 ISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI---AG 1175 (1858)
Q Consensus 1099 ~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI---ag 1175 (1858)
++.|.+.|+.+..+||+++ +.+|.+++++|++|+++||||||+++|||||++|++|||||+|.+.++|+||+ |+
T Consensus 352 ~~~L~~~~~~~~~~~g~~~---~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR 428 (475)
T PRK01297 352 EERLVKDGINAAQLSGDVP---QHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGR 428 (475)
T ss_pred HHHHHHcCCCEEEEECCCC---HHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCC
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999 22
Q ss_pred ---cceEEEEecCcccHHHHHHHHHHHhhcC-CCCCC
Q psy15269 1176 ---HKEAIAFYDPVADIGLASSLIKLLEYSN-KHVPT 1208 (1858)
Q Consensus 1176 ---~~~aitfvt~~~e~~~l~~Ie~~l~~~~-q~ip~ 1208 (1858)
.+.+++|++. +|..++..++++++... .++|+
T Consensus 429 ~g~~g~~i~~~~~-~d~~~~~~~~~~~~~~~~~~~~~ 464 (475)
T PRK01297 429 AGASGVSISFAGE-DDAFQLPEIEELLGRKISCEMPP 464 (475)
T ss_pred CCCCceEEEEecH-HHHHHHHHHHHHhCCCCcccCCc
Confidence 2378999997 78889999999998876 35443
|
|
| >KOG4284|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-29 Score=300.65 Aligned_cols=270 Identities=15% Similarity=0.192 Sum_probs=231.9
Q ss_pred eechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccccc
Q psy15269 872 WLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYESD 949 (1858)
Q Consensus 872 ~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~ 949 (1858)
.|+.|||++|.||-.....+..++.= ++..+|.||.....+..++.+ .++++.||||++. ..++.+-
T Consensus 97 ~Iv~PTREiaVQI~~tv~~v~~sf~g----------~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~ 165 (980)
T KOG4284|consen 97 VIVTPTREIAVQIKETVRKVAPSFTG----------ARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNM 165 (980)
T ss_pred EEEecchhhhhHHHHHHHHhcccccC----------cceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCc
Confidence 89999999999999887776553322 355899999887666666654 4589999999996 7778888
Q ss_pred ccccceeecccchhhhhhHHhhhhhhcC-CCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCC
Q psy15269 950 VNKYSVLLKYIPQQYKNLVYSYLIQQTA-LSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTD 1028 (1858)
Q Consensus 950 ~~~~~~lLd~a~r~y~~~~~A~lL~~mG-F~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~e 1028 (1858)
+..--+||||||+ |.++| |+.+ +..|+.+||+.||-+.|
T Consensus 166 s~vrlfVLDEADk----------L~~t~sfq~~----In~ii~slP~~rQv~a~-------------------------- 205 (980)
T KOG4284|consen 166 SHVRLFVLDEADK----------LMDTESFQDD----INIIINSLPQIRQVAAF-------------------------- 205 (980)
T ss_pred cceeEEEeccHHh----------hhchhhHHHH----HHHHHHhcchhheeeEE--------------------------
Confidence 8888899999999 77766 9999 99999999999999999
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCccc--EEEEEEECCh--------hhHHHHHHHhhcC---CcEEEEecChHHH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHL--VKQYLIRTPK--------SQKIVNLLSFLEG---KRSLIFVKTYRDA 1095 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~--I~Q~~~~v~~--------~~Kl~~Ll~lL~~---~k~IIFvnTk~~a 1095 (1858)
|||-|..+.++..+||+||..|......... |+|+|+.++. +.|+..|-++++. .++||||+...+|
T Consensus 206 SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra 285 (980)
T KOG4284|consen 206 SATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRA 285 (980)
T ss_pred eccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhh
Confidence 9999999999999999999999987666554 8999987753 2356666666554 8999999999999
Q ss_pred HHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc--
Q psy15269 1096 SRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-- 1173 (1858)
Q Consensus 1096 d~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-- 1173 (1858)
+-++..|...|+++..|.|.|+ |.+|..+++++|+-.++|||+||+.|||||-++|++|||.|.|.|-++|.|||
T Consensus 286 ~~~a~~L~ssG~d~~~ISgaM~---Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGR 362 (980)
T KOG4284|consen 286 EPIATHLKSSGLDVTFISGAMS---QKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGR 362 (980)
T ss_pred hHHHHHhhccCCCeEEeccccc---hhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhh
Confidence 9999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ----cCcceEEEEecCcccHHHHHHH
Q psy15269 1174 ----AGHKEAIAFYDPVADIGLASSL 1195 (1858)
Q Consensus 1174 ----ag~~~aitfvt~~~e~~~l~~I 1195 (1858)
|..|.|+||+...++..-+..+
T Consensus 363 AgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 363 AGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred cccccccceeEEEeccchhhhhhHHH
Confidence 3334899999875664443344
|
|
| >KOG4367|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-29 Score=284.76 Aligned_cols=162 Identities=19% Similarity=0.274 Sum_probs=156.1
Q ss_pred ceeeeEecCCCceE-EEEecCCeEEEecCCCCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeeccc-cCCCCCC
Q psy15269 1408 DIDSVSFDKEKCVC-CTVECGGQSLIHGPGTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR-DYNHRTT 1485 (1858)
Q Consensus 1408 ~v~~f~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~~-~~~~~~~ 1485 (1858)
.||||.|||..++. ++++|+..|++++|..||.+||+.+|++|+||||+.||+++++++ +.||||+-.|+ +-|+|+|
T Consensus 531 ~vawfqlt~spsqrdmilsnecatlsgssleyrtilgsiafskgvhywevtidrhdgnsd-ivigvaqpavnrnvmlgkd 609 (699)
T KOG4367|consen 531 EVAWFQLTPSPSQRDMILSNECATLSGSSLEYRTILGSIAFSKGVHYWEVTIDRHDGNSD-IVIGVAQPAVNRNVMLGKD 609 (699)
T ss_pred ceeeeeccCCchhhceeeecccceecccccchheeeeecccccceeEEEEEEeccCCCCC-ceEEecchhhhhceeeccc
Confidence 49999999999999 999999999999999999999999999999999999999998888 99999999999 9999999
Q ss_pred Ccee-EEEeCCceee-eCCCC-CccCCCcCCCCEEEEEEeccCceEEEEeCCcccc-ccccCCCCCCceeEEEEEeecCC
Q psy15269 1486 GDMW-LYRAYSGNVY-HSGEQ-TTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPH-LAFQDLDTSAPLYPIVLFYSTNA 1561 (1858)
Q Consensus 1486 ~~~W-~y~~~~g~~~-h~~~~-~~~~~~~~~gd~i~v~lDm~~~tl~f~~ng~~~G-vAF~~l~~~~~lyP~Vs~y~~~~ 1561 (1858)
.++| ||.+..++|| ||..+ +|..++++.|.+|||.||+|+||+.|++|+++.| +||.|+.+ -+|||+|+
T Consensus 610 lhgwsmyvdgerswylhnethhnrvlggvtrgtvigvrldcdrgtmeytvndrqddsmaftnmrg--lyypafsv----- 682 (699)
T KOG4367|consen 610 LHGWSMYVDGERSWYLHNETHHNRVLGGVTRGTVIGVRLDCDRGTMEYTVNDRQDDSMAFTNMRG--LYYPAFSV----- 682 (699)
T ss_pred ccceeEEEcCcceeEEeccccccccccccccccEEEEEEeccCCceEEEeccccCCceeeecccc--eeeeeeEe-----
Confidence 9999 9999999999 88887 9999999999999999999999999999999999 99999955 49999999
Q ss_pred CCCeEEEEEeeeccCCC
Q psy15269 1562 NGEKVKITDMTVCETPR 1578 (1858)
Q Consensus 1562 ~~~~v~~~~~~~~~~p~ 1578 (1858)
|++++|+.++++..|.
T Consensus 683 -nanssitvhtglssps 698 (699)
T KOG4367|consen 683 -NANSSITVHTGLSSPS 698 (699)
T ss_pred -ccCceEEEecCCCCCC
Confidence 9999999999998885
|
|
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=289.05 Aligned_cols=315 Identities=21% Similarity=0.175 Sum_probs=252.4
Q ss_pred cccCccHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcC--CCCCCCccchhhhccccccc
Q psy15269 835 RSMYPTLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDML--LGPPEAHEETETVHWLKTSL 912 (1858)
Q Consensus 835 ~~~~~~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~--~~~pl~~~e~~~~~wL~s~~ 912 (1858)
.+.+ .|.+++|+|..|-.+++-- + -.+..+.|++|+|+||-||=+.+..+- .++..+-...
T Consensus 183 GsgK-tlaf~~Pil~~L~~~~~~~----~--~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~---------- 245 (593)
T KOG0344|consen 183 GSGK-TLAFNLPILQHLKDLSQEK----H--KVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQF---------- 245 (593)
T ss_pred CCcc-hhhhhhHHHHHHHHhhccc----C--ccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhc----------
Confidence 3444 7889999999999999721 0 134456899999999999999988887 5555533211
Q ss_pred cccccCCchhhhhhhh-hcccccccccccccC----ccccccccccceeecccchhhhhhHHhhhhhhc-CCCchhhHHH
Q psy15269 913 LSAGLEPSTAIIDIDK-FVRDMRHVSNNILMS----PNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQT-ALSPREKTVL 986 (1858)
Q Consensus 913 ~~GG~~~~~q~~dl~~-~v~~l~~t~~~ll~~----~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~m-GF~~~~~esL 986 (1858)
..-.........+++ --|+++.||++++.. .-......+..+|+||+|+ +++- +|..| +
T Consensus 246 -~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~----------lfe~~~f~~Q----l 310 (593)
T KOG0344|consen 246 -SKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADL----------LFEPEFFVEQ----L 310 (593)
T ss_pred -ccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHh----------hhChhhHHHH----H
Confidence 211111112222222 355789999998852 2235667778888888877 6665 88889 8
Q ss_pred HHHHHHhHHHHH-HHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCC--cccEEEE
Q psy15269 987 EQIFSVVNKFRA-ELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSS--VHLVKQY 1063 (1858)
Q Consensus 987 ~~Il~~Lpk~RQ-tLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~--~~~I~Q~ 1063 (1858)
..||+.+....- .-+| |||+|..|++.++..+.+++.|.++..+ .+.|+|.
T Consensus 311 a~I~sac~s~~i~~a~F--------------------------Sat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~Qe 364 (593)
T KOG0344|consen 311 ADIYSACQSPDIRVALF--------------------------SATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQE 364 (593)
T ss_pred HHHHHHhcCcchhhhhh--------------------------hccccHHHHHHHHHhhccceeEEEecchhHhhhhhhh
Confidence 888887754221 2255 9999999999999999999999887554 3458888
Q ss_pred EEECC-hhhHHHHHHHhhcC---CcEEEEecChHHHHHHHHHH-hhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcE
Q psy15269 1064 LIRTP-KSQKIVNLLSFLEG---KRSLIFVKTYRDASRIISAV-QDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSL 1138 (1858)
Q Consensus 1064 ~~~v~-~~~Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L-~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~I 1138 (1858)
.++|. ...|+..+.+++.. ..++||+.++++|..|.+.| .-.++++..+||+.+ |.+|..++++||.|++.+
T Consensus 365 lvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~---~~qrde~~~~FR~g~Iwv 441 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERS---QKQRDETMERFRIGKIWV 441 (593)
T ss_pred heeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccc---hhHHHHHHHHHhccCeeE
Confidence 88775 56788888888875 78999999999999999999 678999999999999 999999999999999999
Q ss_pred EEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cCcc-eEEEEecCcccHHHHHHHHHHHhhcCCCCCCCcc
Q psy15269 1139 VIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNKHVPTHPH 1211 (1858)
Q Consensus 1139 LVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag~~-~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~~ 1211 (1858)
|||||+.+|||||.+|+.|||||+|...-.||||| ||++ .|||||+. +|..+++.|...+.....++|++.-
T Consensus 442 LicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd-~d~~~ir~iae~~~~sG~evpe~~m 519 (593)
T KOG0344|consen 442 LICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTD-QDMPRIRSIAEVMEQSGCEVPEKIM 519 (593)
T ss_pred EEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEecc-ccchhhhhHHHHHHHcCCcchHHHH
Confidence 99999999999999999999999999999999999 4444 89999998 9999999999999999999997543
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-26 Score=284.31 Aligned_cols=284 Identities=18% Similarity=0.169 Sum_probs=234.0
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.++-|+|+||.|+...+..+.....+ +.....||.....+...+.++.++++.||+++.+ ..++.
T Consensus 98 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~-----------~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~ 166 (401)
T PTZ00424 98 QALILAPTRELAQQIQKVVLALGDYLKV-----------RCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHL 166 (401)
T ss_pred eEEEECCCHHHHHHHHHHHHHHhhhcCc-----------eEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCc
Confidence 4689999999999998876665443322 2233467766656666666778899999999875 44455
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccC
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNST 1027 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~ 1027 (1858)
.......+|+|||+. +.+.||... +.+|++.++...|.+++
T Consensus 167 ~l~~i~lvViDEah~----------~~~~~~~~~----~~~i~~~~~~~~~~i~~------------------------- 207 (401)
T PTZ00424 167 RVDDLKLFILDEADE----------MLSRGFKGQ----IYDVFKKLPPDVQVALF------------------------- 207 (401)
T ss_pred ccccccEEEEecHHH----------HHhcchHHH----HHHHHhhCCCCcEEEEE-------------------------
Confidence 556666777888877 788888888 88999888887888888
Q ss_pred CCCCCcHhHHHHHHHhcCCCEEEEEccCC--cccEEEEEEECCh-hhHHHHHHHhhc---CCcEEEEecChHHHHHHHHH
Q psy15269 1028 DSLFSWGDIEEESNIEVEDPIMKLVKPSS--VHLVKQYLIRTPK-SQKIVNLLSFLE---GKRSLIFVKTYRDASRIISA 1101 (1858)
Q Consensus 1028 eSAT~p~~I~~la~~~L~dpv~I~v~~~~--~~~I~Q~~~~v~~-~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~ 1101 (1858)
|||+|.++.++...++.+|..+.+.... ...++++++.++. ..+...+..++. ..++||||+|++.++.+++.
T Consensus 208 -SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~ 286 (401)
T PTZ00424 208 -SATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKK 286 (401)
T ss_pred -EecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHH
Confidence 9999999999999999999888765433 3347888877765 345555665554 37899999999999999999
Q ss_pred HhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccC------
Q psy15269 1102 VQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAG------ 1175 (1858)
Q Consensus 1102 L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag------ 1175 (1858)
|+..++.+..+||+|+ +.+|..++++|++|+++||||||+++||||+|+|++|||||+|.+..+|+||+|+
T Consensus 287 l~~~~~~~~~~h~~~~---~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 363 (401)
T PTZ00424 287 MHERDFTVSCMHGDMD---QKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGR 363 (401)
T ss_pred HHHCCCcEEEEeCCCC---HHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCC
Confidence 9999999999999999 9999999999999999999999999999999999999999999999999999922
Q ss_pred cceEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1176 HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1176 ~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
.|.+++|+++ ++...++.+++.++...++.+.
T Consensus 364 ~G~~i~l~~~-~~~~~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 364 KGVAINFVTP-DDIEQLKEIERHYNTQIEEMPM 395 (401)
T ss_pred CceEEEEEcH-HHHHHHHHHHHHHCCcccccCc
Confidence 2379999998 8899999999999988777664
|
|
| >KOG0329|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-26 Score=254.71 Aligned_cols=253 Identities=19% Similarity=0.236 Sum_probs=213.4
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.++.-+|+||+||...-..+...+|- .+..+|+||+.+..+..-+.+...++++||+|++- ..+..
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~----------vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l 181 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPS----------VKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSL 181 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCC----------ceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccC
Confidence 4588999999999998887766666665 36789999999999998888888899999999994 66778
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccC
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNST 1027 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~ 1027 (1858)
++.+...+|||+.|+ ||-+....++ +.+|++..|..+|-++|
T Consensus 182 ~lk~vkhFvlDEcdk---------mle~lDMrRD----vQEifr~tp~~KQvmmf------------------------- 223 (387)
T KOG0329|consen 182 NLKNVKHFVLDECDK---------MLEQLDMRRD----VQEIFRMTPHEKQVMMF------------------------- 223 (387)
T ss_pred chhhcceeehhhHHH---------HHHHHHHHHH----HHHHhhcCcccceeeee-------------------------
Confidence 888899999999988 3444556677 99999999999999999
Q ss_pred CCCCCcHhHHHHHHHhcCCCEEEEEccCCccc---EEEEEEECChhhH---HHHHHHhhcCCcEEEEecChHHHHHHHHH
Q psy15269 1028 DSLFSWGDIEEESNIEVEDPIMKLVKPSSVHL---VKQYLIRTPKSQK---IVNLLSFLEGKRSLIFVKTYRDASRIISA 1101 (1858)
Q Consensus 1028 eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~---I~Q~~~~v~~~~K---l~~Ll~lL~~~k~IIFvnTk~~ad~L~~~ 1101 (1858)
|||.+++|+...++||.||..|-++.++.-. ++|+|+...+.+| +..|++.|.-.+++||+.+..+
T Consensus 224 -satlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~R------- 295 (387)
T KOG0329|consen 224 -SATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQR------- 295 (387)
T ss_pred -eeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhh-------
Confidence 9999999999999999999999998765544 7999988765554 5555555666999999987665
Q ss_pred HhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc------cC
Q psy15269 1102 VQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI------AG 1175 (1858)
Q Consensus 1102 L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI------ag 1175 (1858)
++ | ..+ +||||+..||+||..|++|||||+|.++++|.||+ |.
T Consensus 296 --------------l~-------------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGt 344 (387)
T KOG0329|consen 296 --------------LS-------------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 344 (387)
T ss_pred --------------hh-------------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccc
Confidence 22 4 224 89999999999999999999999999999999999 22
Q ss_pred cceEEEEecCcccHHHHHHHHHHHhhcCCCCCCC
Q psy15269 1176 HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTH 1209 (1858)
Q Consensus 1176 ~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~ 1209 (1858)
++.||+|+...++...+..+...+...+.++|+.
T Consensus 345 kglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 345 KGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred ccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 3389999998788899999999888888888863
|
|
| >KOG0783|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-24 Score=263.79 Aligned_cols=294 Identities=28% Similarity=0.397 Sum_probs=223.0
Q ss_pred CCeEEEEcCCCCCCCCcCCCCCcccccccCCCCC----eEEEEEcCCEEEEEecCCcEEEEccc---ccCCCCCCCCCCc
Q psy15269 187 HSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSN----IRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLANTTIQPLP 259 (1858)
Q Consensus 187 ~g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~~----IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~~~~~~P 259 (1858)
..+||+||+|.+.-||.|.......|..+..+.. +.+|+.|.+|++|+++.|+||+||.| ++|.|+......|
T Consensus 141 pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq~~~iP 220 (1267)
T KOG0783|consen 141 PNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQYNFIP 220 (1267)
T ss_pred ccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCcccccccc
Confidence 3789999999999999999999999999987754 78999999999999999999999986 9999998889999
Q ss_pred eeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcc-cccceeeecC-CCC-CcEEEEEecCceEEE
Q psy15269 260 KRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLS-QRRPKLIMGG-LYG-KRVTQVSAGHSHSAA 336 (1858)
Q Consensus 260 ~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~-~~~P~~V~~~-l~~-~~IvqVa~G~~HS~a 336 (1858)
++|+.. ...+|.+|+....|+++||++|.||+||.|.++|||..+... ...|..|... +.+ +.|+.|+||..|+++
T Consensus 221 krV~gL-~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hsVa 299 (1267)
T KOG0783|consen 221 KRVPGL-IGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHSVA 299 (1267)
T ss_pred cccccc-cccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcccceeee
Confidence 998863 345677788999999999999999999999999999876653 3456665421 122 379999999999999
Q ss_pred EEeCCeEEEEecCCCCCCCCCCC-Ccccccccccc-CCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCcee
Q psy15269 337 VTEDGLLYTWGEGDHGRLGHGDL-KSRHTPTLVTE-LSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVT 414 (1858)
Q Consensus 337 LT~dG~VYtWG~N~~GQLG~G~~-~~~~~P~~V~~-l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~ 414 (1858)
.|+. .||+||.|. ||||..+. ....+|..+.. ...|..|+|....|++++.+| .+|++-+-+.-.+..+ ....
T Consensus 300 wt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~~~~~v~~v~a~~~ATVc~~~~~-~i~~~ady~~~k~~~n--~~~l 374 (1267)
T KOG0783|consen 300 WTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAGLLSPVIHVVATTRATVCLLQNN-SIIAFADYNQVKLPFN--VDFL 374 (1267)
T ss_pred eecc-eEEEecccC-ceecCCCCCceeecchhhcccccceEEEEecCccEEEEecCC-cEEEEecccceecCcc--hhcc
Confidence 9966 799999986 99998764 45677865543 345899999999999999999 4998875443322211 1111
Q ss_pred ccEEeee----cccccEEEEEecCceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcCceEEEEEeC
Q psy15269 415 TPKVIEA----LRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQY 490 (1858)
Q Consensus 415 ~P~~V~~----l~~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~d 490 (1858)
.-..|.+ ..-.++.+..+....-+++|+-|.||.|-.-+.........| +.-..|.+|+--.+..+++|.|
T Consensus 375 ks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~~~c~ftp-----~r~~~isdIa~~~N~~~~~t~d 449 (1267)
T KOG0783|consen 375 KSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTRTSCKFTP-----LRIFEISDIAWTANSLILCTRD 449 (1267)
T ss_pred ceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCceeeeeccc-----ceeeehhhhhhccceEEEEecC
Confidence 1111110 111345666777788899999999999982222211112222 2223577899888999999999
Q ss_pred C
Q psy15269 491 N 491 (1858)
Q Consensus 491 G 491 (1858)
|
T Consensus 450 G 450 (1267)
T KOG0783|consen 450 G 450 (1267)
T ss_pred c
Confidence 9
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-24 Score=277.49 Aligned_cols=294 Identities=12% Similarity=0.090 Sum_probs=211.7
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|+|+.|.+- ....+.+|-|+|+||.++-+.+..+. ... ++...+.|+.. .
T Consensus 66 la~~LPiL~~l~~~------------~~~~aL~l~PtraLa~q~~~~l~~l~-~~~-----------i~v~~~~Gdt~-~ 120 (742)
T TIGR03817 66 LAYQLPVLSALADD------------PRATALYLAPTKALAADQLRAVRELT-LRG-----------VRPATYDGDTP-T 120 (742)
T ss_pred HHHHHHHHHHHhhC------------CCcEEEEEcChHHHHHHHHHHHHHhc-cCC-----------eEEEEEeCCCC-H
Confidence 44677887777541 12246889999999999999888764 111 23344555544 4
Q ss_pred hhhhhhhhhccccccccccccc-----Cccc-cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILM-----SPNY-ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVN 994 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~-----~~~~-~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lp 994 (1858)
.+...+.+..++++.||..+.. ...| ........+|+|||++ |.+ .|..+ +..+++.++
T Consensus 121 ~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~----------~~g-~fg~~----~~~il~rL~ 185 (742)
T TIGR03817 121 EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS----------YRG-VFGSH----VALVLRRLR 185 (742)
T ss_pred HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh----------ccC-ccHHH----HHHHHHHHH
Confidence 4555556677889999977652 2223 2245567788888887 655 36667 666766665
Q ss_pred HH-------HHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc-ccEEEEEEE
Q psy15269 995 KF-------RAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV-HLVKQYLIR 1066 (1858)
Q Consensus 995 k~-------RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~-~~I~Q~~~~ 1066 (1858)
+. +|.+++ |||++...+ +++.++.+|+.+ +..+.. ....+.++.
T Consensus 186 ri~~~~g~~~q~i~~--------------------------SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~~~~~~~ 237 (742)
T TIGR03817 186 RLCARYGASPVFVLA--------------------------SATTADPAA-AASRLIGAPVVA-VTEDGSPRGARTVALW 237 (742)
T ss_pred HHHHhcCCCCEEEEE--------------------------ecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCceEEEEe
Confidence 54 456677 999998865 788888888765 332222 222233222
Q ss_pred CCh-----------------hhHHHHHHHhhcC-CcEEEEecChHHHHHHHHHHhhC--------CCeEEEEecCCCCcc
Q psy15269 1067 TPK-----------------SQKIVNLLSFLEG-KRSLIFVKTYRDASRIISAVQDS--------NMMTIPMSNNGTSWS 1120 (1858)
Q Consensus 1067 v~~-----------------~~Kl~~Ll~lL~~-~k~IIFvnTk~~ad~L~~~L~~~--------g~~~~~LHG~ms~~~ 1120 (1858)
.+. .++...+.++++. .++||||+|++.|+.+++.|++. +..+..+||+++
T Consensus 238 ~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~--- 314 (742)
T TIGR03817 238 EPPLTELTGENGAPVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYL--- 314 (742)
T ss_pred cCCccccccccccccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCC---
Confidence 221 2455556666654 89999999999999999998763 678899999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc---cC--c-ceEEEEecC-cccHHHHH
Q psy15269 1121 HVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI---AG--H-KEAIAFYDP-VADIGLAS 1193 (1858)
Q Consensus 1121 Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI---ag--~-~~aitfvt~-~~e~~~l~ 1193 (1858)
|++|.+++++|++|++++|||||+++|||||++|++|||||+|.+.++|+||+ |+ + +.++++... ..|..+++
T Consensus 315 ~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 315 PEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVH 394 (742)
T ss_pred HHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999 22 2 278888763 15667788
Q ss_pred HHHHHHhhcCCC
Q psy15269 1194 SLIKLLEYSNKH 1205 (1858)
Q Consensus 1194 ~Ie~~l~~~~q~ 1205 (1858)
.++++++...++
T Consensus 395 ~~~~~~~~~~e~ 406 (742)
T TIGR03817 395 HPEALFDRPVEA 406 (742)
T ss_pred CHHHHhcCCCcc
Confidence 888888765543
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG3953|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-24 Score=234.41 Aligned_cols=159 Identities=23% Similarity=0.314 Sum_probs=138.3
Q ss_pred eEecCCCceE--EEEecCCeEEEecC--CCCceEEecccccCceEEEEEEEEeecCCCc-ceEEEEEeeccc----cCCC
Q psy15269 1412 VSFDKEKCVC--CTVECGGQSLIHGP--GTRGYGVANIGITRGCYQWKFLIVNEHKGNE-GTCIGVTRWPIR----DYNH 1482 (1858)
Q Consensus 1412 f~~D~~~~~~--~~~~~~~~~~~~~~--~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~-~~~vGva~~~~~----~~~~ 1482 (1858)
++|-|+..+. .+.+++++++.-.- ....-+.|..+|++|.|+|+++|+...+|.+ ++||+++.+|++ -.+.
T Consensus 27 ~~w~~~drs~nv~vk~~~~~tfhrhpvaqstd~~rGk~g~~~g~h~w~i~w~~r~~GT~avVGIaTk~Aplha~gy~aLl 106 (242)
T KOG3953|consen 27 HGWSPSDRSLNVFVKLPDGLTFHRHPVAQSTDGIRGKRGYSRGRHAWEIAWPNRQRGTHAVVGIATKVAPLHAVGYTALL 106 (242)
T ss_pred hccCcccccceeEEecCCcceEEecCCccccccccceeeeccCceEEEEEecCCccCCcceEEEEcccCchhhhHHHHHh
Confidence 5788876555 55666667765332 2366788999999999999999999999999 699999999999 5677
Q ss_pred CCCCceeEEEeCCceeeeCCCC------CccCCCcCCCCEEEEEEeccCceEEEEeCCccccccccCCCCCCceeEEEE-
Q psy15269 1483 RTTGDMWLYRAYSGNVYHSGEQ------TTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPIVL- 1555 (1858)
Q Consensus 1483 ~~~~~~W~y~~~~g~~~h~~~~------~~~~~~~~~gd~i~v~lDm~~~tl~f~~ng~~~GvAF~~l~~~~~lyP~Vs- 1555 (1858)
|+++++|||.-.+++|||+|.. ....|+|.+||+|+|+|||++||++|++|++|+||||++++ +++|||+||
T Consensus 107 Gs~~qswGw~l~~~~l~H~g~~~~~yp~~~~~p~~~vp~ri~viLDm~egtl~F~~~~e~LGvAFRgL~-~~~LYP~Vsa 185 (242)
T KOG3953|consen 107 GSNSQSWGWDLGRNVLYHDGQVAGLYPALNRQPKYNVPDRILVILDMIEGTLSFAADGEYLGVAFRGLK-DKKLYPAVSA 185 (242)
T ss_pred CCCCCccceecccceeeecCccccccccccCCchhcCCceEEEEEeeccceEEEEECCeEEeeeecCCC-CCcceeeeee
Confidence 8999999999999999999953 33477899999999999999999999999999999999997 557999999
Q ss_pred EeecCCCCCeEEEEEeeeccCCC
Q psy15269 1556 FYSTNANGEKVKITDMTVCETPR 1578 (1858)
Q Consensus 1556 ~y~~~~~~~~v~~~~~~~~~~p~ 1578 (1858)
+||+++ +.|+|+|.|+
T Consensus 186 v~g~~E-------vtm~Ylg~~~ 201 (242)
T KOG3953|consen 186 VWGHCE-------VTMKYLGTLD 201 (242)
T ss_pred hhccee-------EEEEEeCCcC
Confidence 999999 9999999997
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=271.97 Aligned_cols=261 Identities=12% Similarity=0.119 Sum_probs=200.0
Q ss_pred echHhHHHHHHHHHHhCCcCCCCCCCccchhhhcc-------------ccccccccccCCchhhhhhhhhcccccccc--
Q psy15269 873 LIDMERALALLIGKTLGDMLLGPPEAHEETETVHW-------------LKTSLLSAGLEPSTAIIDIDKFVRDMRHVS-- 937 (1858)
Q Consensus 873 lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~w-------------L~s~~~~GG~~~~~q~~dl~~~v~~l~~t~-- 937 (1858)
++-|+|+||.|+-.++..+....+..+ +.+...| ++...++||..++.|...+.+++.++++|+
T Consensus 67 ~~vPtReLa~Qi~~~~~~~~k~l~~~~-~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~ 145 (844)
T TIGR02621 67 YVVNRRTVVDQVTEEAEKIGERLPDVP-EVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDM 145 (844)
T ss_pred EeCchHHHHHHHHHHHHHHHHHhcccc-hhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHH
Confidence 466999999999999999888765433 2333344 788899999999999999999999999995
Q ss_pred --ccccc-----Cc-----cccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHh--HHH---HHHH
Q psy15269 938 --NNILM-----SP-----NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVV--NKF---RAEL 1000 (1858)
Q Consensus 938 --~~ll~-----~~-----~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~L--pk~---RQtL 1000 (1858)
++.|. +. .....++...+||||| + ++|||..+ +++|++.+ ++. ||++
T Consensus 146 i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEA----------D--Ld~gF~~~----l~~Il~~l~rp~~~rprQtL 209 (844)
T TIGR02621 146 IGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEA----------H--LEPAFQEL----LKQIMNEQQRPPDFLPLRVV 209 (844)
T ss_pred HcCCccccccccccccccchhhhhccceEEEEehh----------h--hccccHHH----HHHHHHhcccCcccccceEE
Confidence 22221 00 0011334455555555 4 57999999 99999976 432 6999
Q ss_pred hhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcc--cEEEEEEECChhhHHHHHHH
Q psy15269 1001 LSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVH--LVKQYLIRTPKSQKIVNLLS 1078 (1858)
Q Consensus 1001 Lf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~--~I~Q~~~~v~~~~Kl~~Ll~ 1078 (1858)
+| |||+|.++.++++.++++|+.+.+..+..+ .+.|+ +.++...|+..++.
T Consensus 210 LF--------------------------SAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~-v~v~~e~Kl~~lv~ 262 (844)
T TIGR02621 210 EL--------------------------TATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKL-VPPSDEKFLSTMVK 262 (844)
T ss_pred EE--------------------------ecCCCccHHHHHHHHccCCceeecccccccccceEEE-EecChHHHHHHHHH
Confidence 99 999999999999999999988777544333 36664 45555555554443
Q ss_pred h----hc--CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHH-----HHHHHHhc----CC-------C
Q psy15269 1079 F----LE--GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECL-----ELLNLFNT----GK-------S 1136 (1858)
Q Consensus 1079 l----L~--~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~-----~~L~~Fr~----G~-------~ 1136 (1858)
. +. .+++||||||+++|+.+++.|++.++ ..|||+|+ |.+|. +++++|++ |+ .
T Consensus 263 ~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~---q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~ 337 (844)
T TIGR02621 263 ELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLR---GAERDDLVKKEIFNRFLPQMLSGSRARPQQGT 337 (844)
T ss_pred HHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCC---HHHHhhHHHHHHHHHHhccccccccccccccc
Confidence 2 22 37899999999999999999999887 89999999 99999 88999987 54 6
Q ss_pred cEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cCc-c-eEEEEecC
Q psy15269 1137 SLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AGH-K-EAIAFYDP 1185 (1858)
Q Consensus 1137 ~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag~-~-~aitfvt~ 1185 (1858)
.|||||||++|||||+. ++|||++.| .++||||+ +|+ + .+++++.+
T Consensus 338 ~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 338 VYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred eEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 89999999999999987 899999887 58999999 222 2 45788754
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-23 Score=244.11 Aligned_cols=310 Identities=19% Similarity=0.178 Sum_probs=222.6
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.|.+.+|+++.|-.-. -+...+.+|=|+|+|++||-+.+..+-+|.-++. ....|--.+
T Consensus 197 TLaY~iPIVQ~L~~R~----------v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V-----------~~~sgq~sl 255 (620)
T KOG0350|consen 197 TLAYVIPIVQLLSSRP----------VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAV-----------CSLSGQNSL 255 (620)
T ss_pred eeeehhHHHHHHccCC----------ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEE-----------Eecccccch
Confidence 4667788888775431 1222357899999999999999999999988854 344555444
Q ss_pred chhhhhhhh-----hcccccccccccccCcc---ccccccccceeecccchhhhhhHH----hhhhhhcC----------
Q psy15269 920 STAIIDIDK-----FVRDMRHVSNNILMSPN---YESDVNKYSVLLKYIPQQYKNLVY----SYLIQQTA---------- 977 (1858)
Q Consensus 920 ~~q~~dl~~-----~v~~l~~t~~~ll~~~~---~~~~~~~~~~lLd~a~r~y~~~~~----A~lL~~mG---------- 977 (1858)
..+..+|.. .+|++++||+||.|+-+ --++....++|+|||||-. +.++ ..+|.+.+
T Consensus 256 ~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll-~qsfQ~Wl~~v~~~~~~~k~~~~~~n 334 (620)
T KOG0350|consen 256 EDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLL-DQSFQEWLDTVMSLCKTMKRVACLDN 334 (620)
T ss_pred HHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHH-HHHHHHHHHHHHHHhCCchhhcChhh
Confidence 556666653 36899999999998544 3445567788899999911 1111 11122211
Q ss_pred -------CCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEE
Q psy15269 978 -------LSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMK 1050 (1858)
Q Consensus 978 -------F~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I 1050 (1858)
+++-.-.++...+-.+++-.+.|+| |||+.+.-.+++.--+..|-..
T Consensus 335 ii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~--------------------------satLsqdP~Kl~~l~l~~Prl~ 388 (620)
T KOG0350|consen 335 IIRQRQAPQPTVLSELLTKLGKLYPPLWKLVF--------------------------SATLSQDPSKLKDLTLHIPRLF 388 (620)
T ss_pred hhhhcccCCchhhHHHHhhcCCcCchhHhhhc--------------------------chhhhcChHHHhhhhcCCCceE
Confidence 0111011111111112223334444 9999888888888888999444
Q ss_pred EEcc------CCcccEEEEEEECChhhHHHHHHHhhcC---CcEEEEecChHHHHHHHHHHh----hCCCeEEEEecCCC
Q psy15269 1051 LVKP------SSVHLVKQYLIRTPKSQKIVNLLSFLEG---KRSLIFVKTYRDASRIISAVQ----DSNMMTIPMSNNGT 1117 (1858)
Q Consensus 1051 ~v~~------~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~----~~g~~~~~LHG~ms 1117 (1858)
.+.. .-...+.++++.++...|-..++.++.. .++|+|+++...+.+++..|+ ...+++..+.|.++
T Consensus 389 ~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~ 468 (620)
T KOG0350|consen 389 HVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLN 468 (620)
T ss_pred EeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhh
Confidence 3321 1222378888888888888888888865 899999999999999999988 35778889999999
Q ss_pred CccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cCcc-eEEEEecCcccHHH
Q psy15269 1118 SWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGL 1191 (1858)
Q Consensus 1118 ~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag~~-~aitfvt~~~e~~~ 1191 (1858)
+..|.+.+++|++|++++|||||+.|||||+.+|+.|||||+|.+...||||+ ||+. .|+++++. .+.+.
T Consensus 469 ---~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~-~~~r~ 544 (620)
T KOG0350|consen 469 ---GKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDK-HEKRL 544 (620)
T ss_pred ---HHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeecc-ccchH
Confidence 99999999999999999999999999999999999999999999999999999 4444 89999998 55555
Q ss_pred HHHHHHHHhh
Q psy15269 1192 ASSLIKLLEY 1201 (1858)
Q Consensus 1192 l~~Ie~~l~~ 1201 (1858)
+.++.+..+.
T Consensus 545 F~klL~~~~~ 554 (620)
T KOG0350|consen 545 FSKLLKKTNL 554 (620)
T ss_pred HHHHHHHhcc
Confidence 4444444433
|
|
| >KOG0783|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-23 Score=252.60 Aligned_cols=297 Identities=27% Similarity=0.413 Sum_probs=219.4
Q ss_pred EEEecCCcEEEEccc---ccCCCCCCCCCCceeecCcc-CcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCc
Q psy15269 232 FLLDSTGGLLVYGKG---WLGLANTTIQPLPKRVPLEA-AIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTL 307 (1858)
Q Consensus 232 laLt~dG~VyawG~N---qLGlg~~~~~~~P~~V~~~~-~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~ 307 (1858)
++++.-..||.||.| .||.|+......|.+|.+.. ...-+.+|+.+..|++++++.|+||++|.+..|.||+|+..
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq 215 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQ 215 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCccc
Confidence 445666899999987 89999999999999998662 22224445689999999999999999999999999999988
Q ss_pred ccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCC-ccc-----cccccccCCCceEEeecC
Q psy15269 308 SQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLK-SRH-----TPTLVTELSDVGAVSCGE 381 (1858)
Q Consensus 308 ~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~-~~~-----~P~~V~~l~~I~~IAcG~ 381 (1858)
....|+.|++ +.+.+|.+|++...|+++||++|.||+||.|..+|||..+.. ... ++..+++.+.|+.|+||.
T Consensus 216 ~~~iPkrV~g-L~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~ 294 (1267)
T KOG0783|consen 216 YNFIPKRVPG-LIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGK 294 (1267)
T ss_pred cccccccccc-ccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhccc
Confidence 8899999997 899999999999999999999999999999999999997643 223 344556666799999999
Q ss_pred ceEEEEEcCCCEEEEEeCCCCCCCCCCCCCc-eeccEEeeecccccEEEEEecCceEEEEecCCcEEEEe-CCCCC--CC
Q psy15269 382 SHTLVLSQDGHTVWSMGSGNLGKLGHEDTGK-VTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG-LGLRS--SS 457 (1858)
Q Consensus 382 ~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~-~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WG-LG~gs--s~ 457 (1858)
.|+++-++.- ||+||.|+ ||||..+... +.+|..+.. ....|..+.|....+++++.+|.+|++- ...-. ..
T Consensus 295 ~hsVawt~~~--VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~~~n 370 (1267)
T KOG0783|consen 295 SHSVAWTDTD--VYSWGLNN-GQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSIIAFADYNQVKLPFN 370 (1267)
T ss_pred ceeeeeecce--EEEecccC-ceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEecCCcEEEEecccceecCcc
Confidence 9999999876 99999875 9999876643 466765532 3446899999999999999999999987 11000 00
Q ss_pred ccccccEEecC----CCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEEec
Q psy15269 458 ISFHTPVLVTG----LSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAG 533 (1858)
Q Consensus 458 ~~~~~P~~V~~----l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G 533 (1858)
.....-..|.+ +.-.++..-.+...-.+++|+-|+||.|-.++.-. +.-. -.|..+. .|.+|+--
T Consensus 371 ~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~-----~~c~-ftp~r~~-----~isdIa~~ 439 (1267)
T KOG0783|consen 371 VDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTR-----TSCK-FTPLRIF-----EISDIAWT 439 (1267)
T ss_pred hhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCce-----eeee-cccceee-----ehhhhhhc
Confidence 00001111111 01123455555666678999999999999764211 0001 1233332 24566655
Q ss_pred CcceEEEeecCCCC
Q psy15269 534 SLFSIAYTVPPSNS 547 (1858)
Q Consensus 534 ~~hS~alt~~~~dG 547 (1858)
.+.-++.| .||
T Consensus 440 ~N~~~~~t---~dG 450 (1267)
T KOG0783|consen 440 ANSLILCT---RDG 450 (1267)
T ss_pred cceEEEEe---cCc
Confidence 55556666 677
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-21 Score=248.29 Aligned_cols=254 Identities=14% Similarity=0.077 Sum_probs=184.5
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCcccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPNYESD 949 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~~~~~ 949 (1858)
.+.++-|+|+||.|++..++..+....... ++-.+.+||... .+.....+..++++.|++-.+ ...
T Consensus 224 ~ilvt~PrreLa~qi~~~i~~~vg~~~~~g--------~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l-----~~L 289 (675)
T PHA02653 224 PIVLSLPRVALVRLHSITLLKSLGFDEIDG--------SPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL-----NKL 289 (675)
T ss_pred EEEEECcHHHHHHHHHHHHHHHhCccccCC--------ceEEEEECCcch-HHhhcccCCCCEEEEeCcccc-----ccc
Confidence 467888999999998888765443222111 122567888761 111112235567777765211 134
Q ss_pred ccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHh-HHHHHHHhhhccCCCCcccccccccccccccccCC
Q psy15269 950 VNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVV-NKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTD 1028 (1858)
Q Consensus 950 ~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~L-pk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~e 1028 (1858)
.....+|+|||++ +..+| +.+..+++.+ ++.||+++|
T Consensus 290 ~~v~~VVIDEaHE----------r~~~~------DllL~llk~~~~~~rq~ILm-------------------------- 327 (675)
T PHA02653 290 FDYGTVIIDEVHE----------HDQIG------DIIIAVARKHIDKIRSLFLM-------------------------- 327 (675)
T ss_pred ccCCEEEcccccc----------Cccch------hHHHHHHHHhhhhcCEEEEE--------------------------
Confidence 4566788999999 44444 2366666555 455789999
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECC----------hhhH---HHHHHHhhc--CCcEEEEecChH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTP----------KSQK---IVNLLSFLE--GKRSLIFVKTYR 1093 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~----------~~~K---l~~Ll~lL~--~~k~IIFvnTk~ 1093 (1858)
|||+|++++++ ++++++|..|.+.......|+|+|+... ..+| +..+..... .+++|||+++++
T Consensus 328 SATl~~dv~~l-~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ 406 (675)
T PHA02653 328 TATLEDDRDRI-KEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVS 406 (675)
T ss_pred ccCCcHhHHHH-HHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHH
Confidence 99999999888 5899999999887554566888887543 1122 222222222 268999999999
Q ss_pred HHHHHHHHHhhC--CCeEEEEecCCCCccHHHHHHHHHHH-hcCCCcEEEeccccccCCCCCCcceEEEcC---CCC---
Q psy15269 1094 DASRIISAVQDS--NMMTIPMSNNGTSWSHVECLELLNLF-NTGKSSLVIMTLSDFIGNDFTNVEQVIIYN---LPL--- 1164 (1858)
Q Consensus 1094 ~ad~L~~~L~~~--g~~~~~LHG~ms~~~Q~eR~~~L~~F-r~G~~~ILVATDVAARGLDIp~V~~VINyD---lP~--- 1164 (1858)
+++.+++.|++. ++.+..|||+|+ |. .+++++| ++|+.+||||||+|+||||||+|++|||+| .|.
T Consensus 407 ei~~l~~~L~~~~~~~~v~~LHG~Ls---q~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~ 481 (675)
T PHA02653 407 QCEEYKKYLEKRLPIYDFYIIHGKVP---NI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFG 481 (675)
T ss_pred HHHHHHHHHHhhcCCceEEeccCCcC---HH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCccc
Confidence 999999999987 799999999998 64 5778888 799999999999999999999999999999 665
Q ss_pred ------ChhhhhhhccC-----cceEEEEecC
Q psy15269 1165 ------SINHYVFQIAG-----HKEAIAFYDP 1185 (1858)
Q Consensus 1165 ------~~e~YIHRIag-----~~~aitfvt~ 1185 (1858)
+.++|+||+|+ .|.++.|+++
T Consensus 482 g~~~~iSkasa~QRaGRAGR~~~G~c~rLyt~ 513 (675)
T PHA02653 482 GKEMFISKSMRTQRKGRVGRVSPGTYVYFYDL 513 (675)
T ss_pred CcccccCHHHHHHhccCcCCCCCCeEEEEECH
Confidence 67899999922 2289999997
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-21 Score=263.02 Aligned_cols=271 Identities=11% Similarity=0.056 Sum_probs=185.8
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC-chh----hhhhhh-hccccccccccccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP-STA----IIDIDK-FVRDMRHVSNNILM 942 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~-~~q----~~dl~~-~v~~l~~t~~~ll~ 942 (1858)
..+.+|-|+|+||.|+-..+..+.....+. ..++.||-.+ ..+ ...+.+ ..+++++||+++.+
T Consensus 124 ~~alIL~PTreLa~Qi~~~l~~l~~~~~~~-----------~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~ 192 (1176)
T PRK09401 124 KKSYIIFPTRLLVEQVVEKLEKFGEKVGCG-----------VKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSK 192 (1176)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHhhhcCce-----------EEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHH
Confidence 346899999999999999988887655542 2445555432 122 223333 37899999999987
Q ss_pred Cccccccccccceeecccchhhhhh-HHhhhhhhcCCC-chhhHHHHHHHHHhHHHHH------HHhhhccCCCCccccc
Q psy15269 943 SPNYESDVNKYSVLLKYIPQQYKNL-VYSYLIQQTALS-PREKTVLEQIFSVVNKFRA------ELLSAVSNAPSFDDNN 1014 (1858)
Q Consensus 943 ~~~~~~~~~~~~~lLd~a~r~y~~~-~~A~lL~~mGF~-~~~~esL~~Il~~Lpk~RQ------tLLf~~~~~~s~~~~~ 1014 (1858)
.-+.........+|+||||+-...- .+..+|..+||. ++ ++.|++.++..+. .+-. .....
T Consensus 193 ~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~----i~~i~~~i~~~~~~~~~~~~i~~-------l~~~i 261 (1176)
T PRK09401 193 NFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEED----IEKAMELIRLKRKYEEIYEKIRE-------LEEKI 261 (1176)
T ss_pred HHHhccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHH----HHHHHHhcccccccchhhhHHHH-------HHHhh
Confidence 4433333446778899999811100 123345569997 46 8888888875111 0000 00000
Q ss_pred ccccccccccccCCCCCCcHh-HHHHHHHhcCCCEEEEEccCC--cccEEEEEEECChhhHHHHHHHhhcC--CcEEEEe
Q psy15269 1015 VSMGVTSTQHNSTDSLFSWGD-IEEESNIEVEDPIMKLVKPSS--VHLVKQYLIRTPKSQKIVNLLSFLEG--KRSLIFV 1089 (1858)
Q Consensus 1015 ~s~~~~~~~~~~~eSAT~p~~-I~~la~~~L~dpv~I~v~~~~--~~~I~Q~~~~v~~~~Kl~~Ll~lL~~--~k~IIFv 1089 (1858)
... .....+....|||+++. ++. .++.++..+.+.... ..+|.|.|+.++ +|...|..+++. .++||||
T Consensus 262 ~~~-~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l~~~~LIFv 335 (1176)
T PRK09401 262 AEL-KDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYLRNIVDSYIVDE--DSVEKLVELVKRLGDGGLIFV 335 (1176)
T ss_pred hhc-ccCCceEEEEeCCCCccchHH---HHhhccceEEecCcccccCCceEEEEEcc--cHHHHHHHHHHhcCCCEEEEE
Confidence 000 01123344459999875 443 344566666665433 345899988875 455555555543 6899999
Q ss_pred cChHH---HHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEe----ccccccCCCCCC-cceEEEcC
Q psy15269 1090 KTYRD---ASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIM----TLSDFIGNDFTN-VEQVIIYN 1161 (1858)
Q Consensus 1090 nTk~~---ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVA----TDVAARGLDIp~-V~~VINyD 1161 (1858)
+|++. |+.+++.|+..|+++..+||+|. +.+++|++|+++|||| ||+++||||+|+ |++|||||
T Consensus 336 ~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l~--------~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~ 407 (1176)
T PRK09401 336 PSDKGKEYAEELAEYLEDLGINAELAISGFE--------RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYG 407 (1176)
T ss_pred ecccChHHHHHHHHHHHHCCCcEEEEeCcHH--------HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeC
Confidence 99888 99999999999999999999982 2469999999999999 799999999999 89999999
Q ss_pred CCC------ChhhhhhhccC
Q psy15269 1162 LPL------SINHYVFQIAG 1175 (1858)
Q Consensus 1162 lP~------~~e~YIHRIag 1175 (1858)
+|. ..+.|+||+++
T Consensus 408 vP~~~~~~~~~~~~~~~~~r 427 (1176)
T PRK09401 408 VPKFKFSLEEELAPPFLLLR 427 (1176)
T ss_pred CCCEEEeccccccCHHHHHH
Confidence 999 78999999943
|
|
| >KOG0349|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=226.16 Aligned_cols=292 Identities=14% Similarity=0.147 Sum_probs=207.1
Q ss_pred ceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccccc
Q psy15269 871 LWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYES 948 (1858)
Q Consensus 871 ~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~~ 948 (1858)
..|+.|-|+||-+.=..+..+- +.++.+|. ++-++.||+....|-.++.+++++++.||+|+++ +++-..
T Consensus 289 avivepsrelaEqt~N~i~~Fk--~h~~np~~------r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~ 360 (725)
T KOG0349|consen 289 AVIVEPSRELAEQTHNQIEEFK--MHTSNPEV------RSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVT 360 (725)
T ss_pred eeEecCcHHHHHHHHhhHHHHH--hhcCChhh------hhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcccee
Confidence 3789999999998865333332 22333343 7789999999999999999999999999999996 544444
Q ss_pred cccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCC
Q psy15269 949 DVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTD 1028 (1858)
Q Consensus 949 ~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~e 1028 (1858)
.+..- |.+.|+|++++.-|+.+- |.....++|+.-..-. +.+...|
T Consensus 361 lt~cr----------FlvlDead~lL~qgy~d~----I~r~h~qip~~tsdg~-----------------rlq~~vC--- 406 (725)
T KOG0349|consen 361 LTHCR----------FLVLDEADLLLGQGYDDK----IYRFHGQIPHMTSDGF-----------------RLQSPVC--- 406 (725)
T ss_pred eeeeE----------EEEecchhhhhhcccHHH----HHHHhccchhhhcCCc-----------------cccccee---
Confidence 33333 444455566887787666 6666666665432110 1111122
Q ss_pred CCCCc-HhHHHHHHHhcCCCEEEEEccCCccc--EEEEEEEC-Chh-----------------------------hHHHH
Q psy15269 1029 SLFSW-GDIEEESNIEVEDPIMKLVKPSSVHL--VKQYLIRT-PKS-----------------------------QKIVN 1075 (1858)
Q Consensus 1029 SAT~p-~~I~~la~~~L~dpv~I~v~~~~~~~--I~Q~~~~v-~~~-----------------------------~Kl~~ 1075 (1858)
|||.. =+|.+++++.|+-|..|.++.+.... +.|.+..+ ++- +-...
T Consensus 407 satlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~ 486 (725)
T KOG0349|consen 407 SATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSS 486 (725)
T ss_pred eeEEeEEEeeehhhhhccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhh
Confidence 45543 35777888888888877765433221 33322221 110 01222
Q ss_pred HHHhhcC------------CcEEEEecChHHHHHHHHHHhhC---CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEE
Q psy15269 1076 LLSFLEG------------KRSLIFVKTYRDASRIISAVQDS---NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVI 1140 (1858)
Q Consensus 1076 Ll~lL~~------------~k~IIFvnTk~~ad~L~~~L~~~---g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILV 1140 (1858)
-..++++ +|+||||+||..||.|-++|++. .|+++++|||.. +.+|.+.++.|+++.++.||
T Consensus 487 a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrk---P~Erk~nle~Fkk~dvkfli 563 (725)
T KOG0349|consen 487 ATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRK---PDERKANLESFKKFDVKFLI 563 (725)
T ss_pred hhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCC---hhHHHHHHHhhhhcCeEEEE
Confidence 2223321 78999999999999999999975 478999999998 99999999999999999999
Q ss_pred eccccccCCCCCCcceEEEcCCCCChhhhhhhc---cCcc---eEEEEecCc----------------------------
Q psy15269 1141 MTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI---AGHK---EAIAFYDPV---------------------------- 1186 (1858)
Q Consensus 1141 ATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI---ag~~---~aitfvt~~---------------------------- 1186 (1858)
|||||||||||.++.+|||.-+|.+-..|+||| ++.+ .||+++...
T Consensus 564 ctdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~ 643 (725)
T KOG0349|consen 564 CTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCC 643 (725)
T ss_pred EehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchheeehhhhccCCcccCCccccccceE
Confidence 999999999999999999999999999999999 2222 688876432
Q ss_pred ---ccHHHHHHHHHHHhhcCCCCC
Q psy15269 1187 ---ADIGLASSLIKLLEYSNKHVP 1207 (1858)
Q Consensus 1187 ---~e~~~l~~Ie~~l~~~~q~ip 1207 (1858)
+|..++.++|..++..++.+.
T Consensus 644 iwyne~~llaeve~hln~ti~qv~ 667 (725)
T KOG0349|consen 644 IWYNEPNLLAEVEDHLNITIQQVD 667 (725)
T ss_pred EEeCchhHHHHHHHhhcceeeeeC
Confidence 234678888888888777554
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.8e-21 Score=249.03 Aligned_cols=265 Identities=14% Similarity=0.129 Sum_probs=183.9
Q ss_pred ceechHhHHHHH-HHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhh------hcccccccccccccC
Q psy15269 871 LWLIDMERALAL-LIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDK------FVRDMRHVSNNILMS 943 (1858)
Q Consensus 871 ~~lld~eR~lal-liG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~------~v~~l~~t~~~ll~~ 943 (1858)
+.+|.|.|+|+. |+-.... ..++...+.||+....+...+.+ ..++++.||.++...
T Consensus 503 TLVISPLiSLmqDQV~~L~~----------------~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~ 566 (1195)
T PLN03137 503 TLVISPLVSLIQDQIMNLLQ----------------ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKS 566 (1195)
T ss_pred EEEEeCHHHHHHHHHHHHHh----------------CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcc
Confidence 589999999987 5544321 12455667788776666555543 256889999998742
Q ss_pred cc---c----cccccccceeecccchhhhhhHHhhhhhhcC--CCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccc
Q psy15269 944 PN---Y----ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTA--LSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNN 1014 (1858)
Q Consensus 944 ~~---~----~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mG--F~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~ 1014 (1858)
.. . ...+....+++|||+. +.+.| |.++ |+.+...|+.+-.
T Consensus 567 d~ll~~L~~L~~~~~LslIVIDEAHc----------VSqWGhDFRpd--------Yr~L~~Lr~~fp~------------ 616 (1195)
T PLN03137 567 DSLLRHLENLNSRGLLARFVIDEAHC----------VSQWGHDFRPD--------YQGLGILKQKFPN------------ 616 (1195)
T ss_pred hHHHHHHHhhhhccccceeccCcchh----------hhhcccchHHH--------HHHHHHHHHhCCC------------
Confidence 11 1 0111233455666655 88988 5555 3333333332100
Q ss_pred ccccccccccccCCCCCCcHhHHHHHHHhc--CCCEEEEEccCCcccEEEEEEECChhhH-HHHHHHhhc----CCcEEE
Q psy15269 1015 VSMGVTSTQHNSTDSLFSWGDIEEESNIEV--EDPIMKLVKPSSVHLVKQYLIRTPKSQK-IVNLLSFLE----GKRSLI 1087 (1858)
Q Consensus 1015 ~s~~~~~~~~~~~eSAT~p~~I~~la~~~L--~dpv~I~v~~~~~~~I~Q~~~~v~~~~K-l~~Ll~lL~----~~k~II 1087 (1858)
......+||.+..+++.....| .+++.+ ...-...++. |..+++..+ +..+.+++. ..++||
T Consensus 617 --------vPilALTATAT~~V~eDI~~~L~l~~~~vf-r~Sf~RpNL~--y~Vv~k~kk~le~L~~~I~~~~~~esgII 685 (1195)
T PLN03137 617 --------IPVLALTATATASVKEDVVQALGLVNCVVF-RQSFNRPNLW--YSVVPKTKKCLEDIDKFIKENHFDECGII 685 (1195)
T ss_pred --------CCeEEEEecCCHHHHHHHHHHcCCCCcEEe-ecccCccceE--EEEeccchhHHHHHHHHHHhcccCCCcee
Confidence 0111238999999887665555 344432 2222333443 333444433 456666664 267999
Q ss_pred EecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChh
Q psy15269 1088 FVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSIN 1167 (1858)
Q Consensus 1088 FvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e 1167 (1858)
||+|++.|+.+++.|++.|+.+..+||+|+ +.+|..++++|++|+++|||||++++||||+|+|++|||||+|.+++
T Consensus 686 YC~SRke~E~LAe~L~~~Gika~~YHAGLs---~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiE 762 (1195)
T PLN03137 686 YCLSRMDCEKVAERLQEFGHKAAFYHGSMD---PAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIE 762 (1195)
T ss_pred EeCchhHHHHHHHHHHHCCCCeeeeeCCCC---HHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHH
Confidence 999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred hhhhhc--cCc-c---eEEEEecCcccHHHHHHHH
Q psy15269 1168 HYVFQI--AGH-K---EAIAFYDPVADIGLASSLI 1196 (1858)
Q Consensus 1168 ~YIHRI--ag~-~---~aitfvt~~~e~~~l~~Ie 1196 (1858)
.|+||+ ||+ | .|++|+.+ .|...++.+.
T Consensus 763 sYyQriGRAGRDG~~g~cILlys~-~D~~~~~~lI 796 (1195)
T PLN03137 763 GYHQECGRAGRDGQRSSCVLYYSY-SDYIRVKHMI 796 (1195)
T ss_pred HHHhhhcccCCCCCCceEEEEecH-HHHHHHHHHH
Confidence 999999 222 2 79999987 5654444443
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-20 Score=232.31 Aligned_cols=270 Identities=15% Similarity=0.161 Sum_probs=181.6
Q ss_pred ceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhh---hhhhh-hcccccccccccccCcc-
Q psy15269 871 LWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAI---IDIDK-FVRDMRHVSNNILMSPN- 945 (1858)
Q Consensus 871 ~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~---~dl~~-~v~~l~~t~~~ll~~~~- 945 (1858)
..++.|+|+|+.+.-+.+..+ |. +...+.|+.....+. .++.. ..+++..||.++.....
T Consensus 54 ~lVi~P~~~L~~dq~~~l~~~--gi-------------~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~ 118 (470)
T TIGR00614 54 TLVISPLISLMEDQVLQLKAS--GI-------------PATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRL 118 (470)
T ss_pred EEEEecHHHHHHHHHHHHHHc--CC-------------cEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhH
Confidence 478999999998765555322 11 223333333322111 12222 25678899988765331
Q ss_pred ---ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccc
Q psy15269 946 ---YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTST 1022 (1858)
Q Consensus 946 ---~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~ 1022 (1858)
.........+++|||++ +.+.|.. .+..|..+...|+.+-.
T Consensus 119 ~~~l~~~~~i~~iViDEaH~----------i~~~g~~------fr~~~~~l~~l~~~~~~-------------------- 162 (470)
T TIGR00614 119 LQTLEERKGITLIAVDEAHC----------ISQWGHD------FRPDYKALGSLKQKFPN-------------------- 162 (470)
T ss_pred HHHHHhcCCcCEEEEeCCcc----------cCccccc------cHHHHHHHHHHHHHcCC--------------------
Confidence 11334556677888877 7777732 22224444433332200
Q ss_pred ccccCCCCCCcHhHHHHHHHh--cCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhc----CCcEEEEecChHHHH
Q psy15269 1023 QHNSTDSLFSWGDIEEESNIE--VEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLE----GKRSLIFVKTYRDAS 1096 (1858)
Q Consensus 1023 ~~~~~eSAT~p~~I~~la~~~--L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~----~~k~IIFvnTk~~ad 1096 (1858)
......|||.++.+++..... +.+|..+... -...++...+.. ...+++..+..++. ..++||||+|++.++
T Consensus 163 ~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s-~~r~nl~~~v~~-~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e 240 (470)
T TIGR00614 163 VPIMALTATASPSVREDILRQLNLKNPQIFCTS-FDRPNLYYEVRR-KTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSE 240 (470)
T ss_pred CceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC-CCCCCcEEEEEe-CCccHHHHHHHHHHHhcCCCceEEEECcHHHHH
Confidence 001123899999887655554 3566554432 223334322222 12245666666664 256799999999999
Q ss_pred HHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc---
Q psy15269 1097 RIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI--- 1173 (1858)
Q Consensus 1097 ~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI--- 1173 (1858)
.+++.|++.|+.+..+||+|+ +.+|.+++++|++|+++||||||+++||||+|+|++|||||+|.+++.|+||+
T Consensus 241 ~la~~L~~~g~~~~~~H~~l~---~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRa 317 (470)
T TIGR00614 241 QVTASLQNLGIAAGAYHAGLE---ISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRA 317 (470)
T ss_pred HHHHHHHhcCCCeeEeeCCCC---HHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCc
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cC---cceEEEEecCcccHHHHHHHHH
Q psy15269 1174 AG---HKEAIAFYDPVADIGLASSLIK 1197 (1858)
Q Consensus 1174 ag---~~~aitfvt~~~e~~~l~~Ie~ 1197 (1858)
|+ .+.+++|+++ .|...++.+..
T Consensus 318 GR~G~~~~~~~~~~~-~d~~~~~~~~~ 343 (470)
T TIGR00614 318 GRDGLPSECHLFYAP-ADINRLRRLLM 343 (470)
T ss_pred CCCCCCceEEEEech-hHHHHHHHHHh
Confidence 22 2279999998 66665555543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=246.71 Aligned_cols=297 Identities=12% Similarity=0.111 Sum_probs=198.7
Q ss_pred cCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhcc--ccccccccccCCchhhhhhhhhccccccccccccc--
Q psy15269 867 TNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHW--LKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM-- 942 (1858)
Q Consensus 867 ~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~w--L~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~-- 942 (1858)
+...+..|.|.|+||.++-+.+...+.+..-.. ....... ++-.+..|+.....+.+.+.+-.++++.||.++..
T Consensus 36 ~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~-~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LL 114 (1490)
T PRK09751 36 KTSRILYISPIKALGTDVQRNLQIPLKGIADER-RRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLML 114 (1490)
T ss_pred CCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhh-hhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHH
Confidence 345679999999999999988764332211000 0000000 23456778887666666666778999999999864
Q ss_pred -CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccc
Q psy15269 943 -SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTS 1021 (1858)
Q Consensus 943 -~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~ 1021 (1858)
++......+...+|+||++. |.+..+-..+..+++.|...+++..|++.+
T Consensus 115 tsk~r~~L~~Vr~VIVDE~H~----------L~g~kRG~~Lel~LeRL~~l~~~~~QrIgL------------------- 165 (1490)
T PRK09751 115 TSRARETLRGVETVIIDEVHA----------VAGSKRGAHLALSLERLDALLHTSAQRIGL------------------- 165 (1490)
T ss_pred hhhhhhhhccCCEEEEecHHH----------hcccccccHHHHHHHHHHHhCCCCCeEEEE-------------------
Confidence 33344567788888999977 666544444334466666666666788888
Q ss_pred cccccCCCCCCcHhHHHHHHHhc-CCCEEEEEccCCcc-cEEEEEEECChhhH------------------------HHH
Q psy15269 1022 TQHNSTDSLFSWGDIEEESNIEV-EDPIMKLVKPSSVH-LVKQYLIRTPKSQK------------------------IVN 1075 (1858)
Q Consensus 1022 ~~~~~~eSAT~p~~I~~la~~~L-~dpv~I~v~~~~~~-~I~Q~~~~v~~~~K------------------------l~~ 1075 (1858)
|||+++ .+++++... ++|+.|........ .++ .++.+....+ ...
T Consensus 166 -------SATI~n-~eevA~~L~g~~pv~Iv~~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 166 -------SATVRS-ASDVAAFLGGDRPVTVVNPPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred -------EeeCCC-HHHHHHHhcCCCCEEEECCCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 999987 567775433 35776633222111 233 2222221110 112
Q ss_pred HHHhh-cCCcEEEEecChHHHHHHHHHHhhCC---------------------------------CeEEEEecCCCCccH
Q psy15269 1076 LLSFL-EGKRSLIFVKTYRDASRIISAVQDSN---------------------------------MMTIPMSNNGTSWSH 1121 (1858)
Q Consensus 1076 Ll~lL-~~~k~IIFvnTk~~ad~L~~~L~~~g---------------------------------~~~~~LHG~ms~~~Q 1121 (1858)
++..+ ...++|||||||+.|+.++..|++.. +.+..+||+|+ +
T Consensus 237 il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLS---k 313 (1490)
T PRK09751 237 ILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVS---K 313 (1490)
T ss_pred HHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCC---H
Confidence 33333 34789999999999999999997631 12567899999 9
Q ss_pred HHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccCcc-----eEEEEecCcccHHHHH---
Q psy15269 1122 VECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAGHK-----EAIAFYDPVADIGLAS--- 1193 (1858)
Q Consensus 1122 ~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag~~-----~aitfvt~~~e~~~l~--- 1193 (1858)
++|..+.++||+|++++||||+.+++||||++|++|||||.|.+..+|+||+|+.+ .+..++.+.+...+++
T Consensus 314 eeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r~dlle~~~ 393 (1490)
T PRK09751 314 EQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAV 393 (1490)
T ss_pred HHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999993332 3444555423333333
Q ss_pred HHHHHHhhcCCC
Q psy15269 1194 SLIKLLEYSNKH 1205 (1858)
Q Consensus 1194 ~Ie~~l~~~~q~ 1205 (1858)
.++.+++...++
T Consensus 394 ~ve~~l~g~iE~ 405 (1490)
T PRK09751 394 IVECMFAGRLEN 405 (1490)
T ss_pred HHHHHhcCCCCc
Confidence 355566555444
|
|
| >KOG1428|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-19 Score=226.06 Aligned_cols=316 Identities=19% Similarity=0.268 Sum_probs=206.2
Q ss_pred eEEEEEcCCEEEEEecCCcEEEEccc-ccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEee--CCcEEEEeCCC
Q psy15269 221 IRHIEAGQFCTFLLDSTGGLLVYGKG-WLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTS--EGEVYSWGVGE 297 (1858)
Q Consensus 221 IkqVA~G~~hTlaLt~dG~VyawG~N-qLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~--dG~VysWG~N~ 297 (1858)
-+++-.|..+.++-+.+|+||..|++ .+|+-...... ..+.++++|+.| +.|-+.++++.- +|-+++-|...
T Consensus 481 tv~L~~~RE~A~iqa~sGKvYYaGn~t~~Gl~e~G~nW--mEL~l~~~IVq~---SVG~D~~~~~~~A~~G~I~~v~D~k 555 (3738)
T KOG1428|consen 481 TVDLHFTREMAFIQARSGKVYYAGNGTRFGLFETGNNW--MELCLPEPIVQI---SVGIDTIMFRSGAGHGWIASVDDKK 555 (3738)
T ss_pred heecccchhhhhhhhcCccEEEecCccEEeEEccCCce--EEecCCCceEEE---EeccchhheeeccCcceEEeccCcc
Confidence 35667788888888999999999998 77755444322 223333444444 467666666655 44455544321
Q ss_pred CCCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCC--ce
Q psy15269 298 HGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSD--VG 375 (1858)
Q Consensus 298 ~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~--I~ 375 (1858)
..| ..-+.++ ....+|+.+.+...-.-+++++|++|..|.... .......++.++.+ |.
T Consensus 556 --~~~-------~~Rr~~P--~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm--------~~n~SSqmln~L~~~~is 616 (3738)
T KOG1428|consen 556 --RNG-------RLRRLVP--SNRRKIVHVCASGHVYGYVSENGKIFMGGLHTM--------RVNVSSQMLNGLDNVMIS 616 (3738)
T ss_pred --ccc-------chhhcCC--CCcceeEEEeeeeEEEEEEccCCeEEeecceeE--------EecchHHHhhccccceee
Confidence 111 1111222 344678888655444457899999999986421 11123346667777 78
Q ss_pred EEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCce-eccEEeee-------------cccccEEEEEecCceE----
Q psy15269 376 AVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKV-TTPKVIEA-------------LRKFRVRKVCAGTSFS---- 437 (1858)
Q Consensus 376 ~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~-~~P~~V~~-------------l~~~~Iv~IaaG~~hS---- 437 (1858)
+++.|..|+++++.+|+ +|.||-|+.||+|+-..... ..|..-.. +.+..-+-..||.-..
T Consensus 617 slAlGKsH~~av~rNG~-l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~Gva 695 (3738)
T KOG1428|consen 617 SLALGKSHGVAVTRNGH-LFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVA 695 (3738)
T ss_pred hhhccccceeEEEeCCe-EEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccc
Confidence 99999999999999996 99999999999998544322 12211110 0111111122222111
Q ss_pred EE--EecCCcEEEEeCC--------------CCCC------------------CccccccEEec---CCCCCCEEEEEEc
Q psy15269 438 VA--LTWDGLVFWWGLG--------------LRSS------------------SISFHTPVLVT---GLSSHQIVDVSIG 480 (1858)
Q Consensus 438 lA--LT~dG~Vy~WGLG--------------~gss------------------~~~~~~P~~V~---~l~~~~Iv~Ia~G 480 (1858)
+. -...|.+..+|.| .+.. ......|..|. +..+.++++|+||
T Consensus 696 C~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG 775 (3738)
T KOG1428|consen 696 CGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCG 775 (3738)
T ss_pred cccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEecc
Confidence 10 0124555555511 1100 00112233332 2334589999999
Q ss_pred CceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEeeccCccccc
Q psy15269 481 DSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAFTPLCVDV 560 (1858)
Q Consensus 481 ~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~WG~n~~gqL 560 (1858)
.+|+++|.+||+||+||.|.+||||.|++.. ...|+.+..+++..|++|++|++|+++.. .||+||.+|....|||
T Consensus 776 ~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~S-k~~Pq~V~~~~~t~~vQVaAGSNHT~l~~---~DGsVFTFGaF~KGQL 851 (3738)
T KOG1428|consen 776 NFHTVLLASDRRVFTFGSNCHGQLGVGDTLS-KNTPQQVILPSDTVIVQVAAGSNHTILRA---NDGSVFTFGAFGKGQL 851 (3738)
T ss_pred CceEEEEecCCcEEEecCCcccccCcCcccc-CCCcceEEcCCCCceEEEecCCCceEEEe---cCCcEEEeccccCccc
Confidence 9999999999999999999999999998754 35799999999989999999999999987 8999999999999999
Q ss_pred CCcch
Q psy15269 561 RPHTF 565 (1858)
Q Consensus 561 g~~t~ 565 (1858)
+.+.-
T Consensus 852 ~RP~~ 856 (3738)
T KOG1428|consen 852 ARPAG 856 (3738)
T ss_pred cCccc
Confidence 98653
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-19 Score=246.72 Aligned_cols=250 Identities=10% Similarity=0.086 Sum_probs=174.1
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhh---hhh-hcccccccccccccCc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIID---IDK-FVRDMRHVSNNILMSP 944 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~d---l~~-~v~~l~~t~~~ll~~~ 944 (1858)
..+.+|-|+|+||.|+-..+..+.....+... .-..+.||+....+... +.+ ..+++++||+++.+..
T Consensus 122 ~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~--------~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~ 193 (1171)
T TIGR01054 122 KRCYIILPTTLLVIQVAEKISSLAEKAGVGTV--------NIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNY 193 (1171)
T ss_pred CeEEEEeCHHHHHHHHHHHHHHHHHhcCCcee--------eeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHH
Confidence 34689999999999999998887765444221 11235688776554333 334 3889999999998632
Q ss_pred cccccccccceeecccchhhhhh-HHhhhhhhcCCCchhhHHHHHHH----------------------HHhHHHHHHHh
Q psy15269 945 NYESDVNKYSVLLKYIPQQYKNL-VYSYLIQQTALSPREKTVLEQIF----------------------SVVNKFRAELL 1001 (1858)
Q Consensus 945 ~~~~~~~~~~~lLd~a~r~y~~~-~~A~lL~~mGF~~~~~esL~~Il----------------------~~Lpk~RQtLL 1001 (1858)
..... ....+++||||+-...- .....|..|||.++ +++.|+ +.+++.||+.+
T Consensus 194 ~~l~~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e---~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l 269 (1171)
T TIGR01054 194 DELGP-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEE---LIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCL 269 (1171)
T ss_pred HHhcC-CCCEEEEeChHhhhhccccHHHHHHHcCCCHH---HHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEE
Confidence 21111 55678899999811100 01223444999875 244443 33444455422
Q ss_pred hhccCCCCcccccccccccccccccCCCCC-CcHhHHHHHHHhcCCCEEEEEccCC--cccEEEEEEECCh-hhHHHHHH
Q psy15269 1002 SAVSNAPSFDDNNVSMGVTSTQHNSTDSLF-SWGDIEEESNIEVEDPIMKLVKPSS--VHLVKQYLIRTPK-SQKIVNLL 1077 (1858)
Q Consensus 1002 f~~~~~~s~~~~~~s~~~~~~~~~~~eSAT-~p~~I~~la~~~L~dpv~I~v~~~~--~~~I~Q~~~~v~~-~~Kl~~Ll 1077 (1858)
...||| .|..++. .+++++..+.+.... ..+|.|.|+.++. .+++..++
T Consensus 270 ------------------------i~~SAT~~p~~~~~---~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~~~~~L~~ll 322 (1171)
T TIGR01054 270 ------------------------IVSSATGRPRGKRA---KLFRELLGFEVGGGSDTLRNVVDVYVEDEDLKETLLEIV 322 (1171)
T ss_pred ------------------------EEEeCCCCccccHH---HHcccccceEecCccccccceEEEEEecccHHHHHHHHH
Confidence 113999 6766543 345677667775443 3358888876654 33333333
Q ss_pred HhhcCCcEEEEecCh---HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEe----ccccccCCC
Q psy15269 1078 SFLEGKRSLIFVKTY---RDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIM----TLSDFIGND 1150 (1858)
Q Consensus 1078 ~lL~~~k~IIFvnTk---~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVA----TDVAARGLD 1150 (1858)
+.+ ..++||||+|+ +.|+++++.|++.|+++..+||+|+ + +++++|++|+++|||| ||+++||||
T Consensus 323 ~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~---~----~~l~~Fr~G~~~vLVata~~tdv~aRGID 394 (1171)
T TIGR01054 323 KKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP---K----EDYEKFAEGEIDVLIGVASYYGTLVRGLD 394 (1171)
T ss_pred HHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC---H----HHHHHHHcCCCCEEEEeccccCcccccCC
Confidence 333 37899999999 9999999999999999999999997 4 6899999999999999 599999999
Q ss_pred CCC-cceEEEcCCCCC
Q psy15269 1151 FTN-VEQVIIYNLPLS 1165 (1858)
Q Consensus 1151 Ip~-V~~VINyDlP~~ 1165 (1858)
+|+ |++|||||+|..
T Consensus 395 ip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 395 LPERVRYAVFLGVPKF 410 (1171)
T ss_pred CCccccEEEEECCCCE
Confidence 999 899999999987
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-19 Score=242.86 Aligned_cols=249 Identities=10% Similarity=0.006 Sum_probs=189.6
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhh---h-hcccccccccccccCcc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDID---K-FVRDMRHVSNNILMSPN 945 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~---~-~v~~l~~t~~~ll~~~~ 945 (1858)
.+.++-|+|+||.|+-..+...+...|+ +..++.||.....+..-++ + .+++++.||. ++. .
T Consensus 651 qvlvLvPT~eLA~Q~~~~f~~~~~~~~v-----------~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~-lL~-~- 716 (1147)
T PRK10689 651 QVAVLVPTTLLAQQHYDNFRDRFANWPV-----------RIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHK-LLQ-S- 716 (1147)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCc-----------eEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHH-HHh-C-
Confidence 4689999999999998888766555444 3345566665544444333 3 4788999985 332 1
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
.........+|+||+++ + |+. ..++++.+++.+|+|+|
T Consensus 717 ~v~~~~L~lLVIDEahr----f---------G~~------~~e~lk~l~~~~qvLl~----------------------- 754 (1147)
T PRK10689 717 DVKWKDLGLLIVDEEHR----F---------GVR------HKERIKAMRADVDILTL----------------------- 754 (1147)
T ss_pred CCCHhhCCEEEEechhh----c---------chh------HHHHHHhcCCCCcEEEE-----------------------
Confidence 12234566788999988 2 543 23455677778899999
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChh-hHHHHHHHhhcCCcEEEEecChHHHHHHHHHHhh
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKS-QKIVNLLSFLEGKRSLIFVKTYRDASRIISAVQD 1104 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~-~Kl~~Ll~lL~~~k~IIFvnTk~~ad~L~~~L~~ 1104 (1858)
|||+++.+..++..++.||..|...+.....+++++...... .|...+..+.+.++++||||+++.++.+++.|++
T Consensus 755 ---SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~ 831 (1147)
T PRK10689 755 ---TATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAE 831 (1147)
T ss_pred ---cCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHH
Confidence 999999999999999999999987665555577666554432 3444455566678999999999999999999998
Q ss_pred C--CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEE-----EcCCCCChhhhhhhc---c
Q psy15269 1105 S--NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVI-----IYNLPLSINHYVFQI---A 1174 (1858)
Q Consensus 1105 ~--g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VI-----NyDlP~~~e~YIHRI---a 1174 (1858)
. ++.+..+||+|+ |.+|.+++++|++|+++||||||+++||||||+|++|| ||++| .|+||+ |
T Consensus 832 ~~p~~~v~~lHG~m~---q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fgla----q~~Qr~GRvG 904 (1147)
T PRK10689 832 LVPEARIAIGHGQMR---ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA----QLHQLRGRVG 904 (1147)
T ss_pred hCCCCcEEEEeCCCC---HHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHH----HHHHHhhccC
Confidence 6 789999999999 99999999999999999999999999999999999999 66654 599998 2
Q ss_pred Ccc---eEEEEec
Q psy15269 1175 GHK---EAIAFYD 1184 (1858)
Q Consensus 1175 g~~---~aitfvt 1184 (1858)
+.+ .|+.++.
T Consensus 905 R~g~~g~a~ll~~ 917 (1147)
T PRK10689 905 RSHHQAYAWLLTP 917 (1147)
T ss_pred CCCCceEEEEEeC
Confidence 222 6676654
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7e-19 Score=227.69 Aligned_cols=265 Identities=14% Similarity=0.200 Sum_probs=177.6
Q ss_pred ceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhh---hhhh-hcccccccccccccCcc-
Q psy15269 871 LWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAII---DIDK-FVRDMRHVSNNILMSPN- 945 (1858)
Q Consensus 871 ~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~---dl~~-~v~~l~~t~~~ll~~~~- 945 (1858)
+.++.|.++|+.+.-..+..+ | +....+.++.....+.. ++.. -.+++..||.+++...-
T Consensus 68 tlVisPl~sL~~dqv~~l~~~--g-------------i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~ 132 (607)
T PRK11057 68 TLVVSPLISLMKDQVDQLLAN--G-------------VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL 132 (607)
T ss_pred EEEEecHHHHHHHHHHHHHHc--C-------------CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH
Confidence 478899999988765554332 1 11222233332222111 1222 24567788888774211
Q ss_pred -ccccccccceeecccchhhhhhHHhhhhhhcC--CCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccc
Q psy15269 946 -YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTA--LSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTST 1022 (1858)
Q Consensus 946 -~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mG--F~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~ 1022 (1858)
.........+++|||+. +.+.| |.++ |..+...|+.+-.
T Consensus 133 ~~l~~~~l~~iVIDEaH~----------i~~~G~~fr~~--------y~~L~~l~~~~p~-------------------- 174 (607)
T PRK11057 133 EHLAHWNPALLAVDEAHC----------ISQWGHDFRPE--------YAALGQLRQRFPT-------------------- 174 (607)
T ss_pred HHHhhCCCCEEEEeCccc----------cccccCcccHH--------HHHHHHHHHhCCC--------------------
Confidence 11112335567888877 77766 5555 3444444433200
Q ss_pred ccccCCCCCCcHhHHHHHHHh--cCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhc---CCcEEEEecChHHHHH
Q psy15269 1023 QHNSTDSLFSWGDIEEESNIE--VEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLE---GKRSLIFVKTYRDASR 1097 (1858)
Q Consensus 1023 ~~~~~eSAT~p~~I~~la~~~--L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~ 1097 (1858)
......|||.++.++...... +.+|... +......++. |..+.+..++..++.++. ..++||||+|++.|+.
T Consensus 175 ~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~~r~nl~--~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~ 251 (607)
T PRK11057 175 LPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFDRPNIR--YTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVED 251 (607)
T ss_pred CcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCCCCCcce--eeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 000112899998877644333 4566543 2222333442 333445556667777664 3789999999999999
Q ss_pred HHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc--cC
Q psy15269 1098 IISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI--AG 1175 (1858)
Q Consensus 1098 L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI--ag 1175 (1858)
+++.|++.|+.+..+||+|+ +.+|.+++++|++|+++|||||++++||||+|+|++|||||+|.+.++|+||+ +|
T Consensus 252 la~~L~~~g~~v~~~Ha~l~---~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaG 328 (607)
T PRK11057 252 TAARLQSRGISAAAYHAGLD---NDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAG 328 (607)
T ss_pred HHHHHHhCCCCEEEecCCCC---HHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhcc
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999 22
Q ss_pred c----ceEEEEecCcccHHHHHHH
Q psy15269 1176 H----KEAIAFYDPVADIGLASSL 1195 (1858)
Q Consensus 1176 ~----~~aitfvt~~~e~~~l~~I 1195 (1858)
+ +.+++|+++ .|...++.+
T Consensus 329 R~G~~~~~ill~~~-~d~~~~~~~ 351 (607)
T PRK11057 329 RDGLPAEAMLFYDP-ADMAWLRRC 351 (607)
T ss_pred CCCCCceEEEEeCH-HHHHHHHHH
Confidence 2 278999998 665554443
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.8e-19 Score=232.24 Aligned_cols=254 Identities=11% Similarity=0.039 Sum_probs=192.1
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhh---hhhhhh-cccccccccccccCcc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAI---IDIDKF-VRDMRHVSNNILMSPN 945 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~---~dl~~~-v~~l~~t~~~ll~~~~ 945 (1858)
.+.++-|+|+||.|+-..+..++...|++ ..++.|+.....+. ..+.++ +++++.||. ++. +
T Consensus 502 qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~-----------v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~-ll~-~- 567 (926)
T TIGR00580 502 QVAVLVPTTLLAQQHFETFKERFANFPVT-----------IELLSRFRSAKEQNEILKELASGKIDILIGTHK-LLQ-K- 567 (926)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCcE-----------EEEEeccccHHHHHHHHHHHHcCCceEEEchHH-Hhh-C-
Confidence 46899999999999988888777666552 34556665533333 334443 778899983 442 2
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
........-+|+||++| | | .. .+++++.+++..|.|++
T Consensus 568 ~v~f~~L~llVIDEahr----f---------g--v~----~~~~L~~~~~~~~vL~~----------------------- 605 (926)
T TIGR00580 568 DVKFKDLGLLIIDEEQR----F---------G--VK----QKEKLKELRTSVDVLTL----------------------- 605 (926)
T ss_pred CCCcccCCEEEeecccc----c---------c--hh----HHHHHHhcCCCCCEEEE-----------------------
Confidence 22344567788999988 2 2 12 34455666666778888
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHH-hhcCCcEEEEecChHHHHHHHHHHhh
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLS-FLEGKRSLIFVKTYRDASRIISAVQD 1104 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~-lL~~~k~IIFvnTk~~ad~L~~~L~~ 1104 (1858)
|||+++....++...+.++..|...+.....+++++...........+.. +.++.+++||||+++.++.+++.|++
T Consensus 606 ---SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~ 682 (926)
T TIGR00580 606 ---SATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDPELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRE 682 (926)
T ss_pred ---ecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHH
Confidence 99998888888888889998888766555567777665443322333333 34568999999999999999999998
Q ss_pred C--CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCC-Chhhhhhhc---cC---
Q psy15269 1105 S--NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPL-SINHYVFQI---AG--- 1175 (1858)
Q Consensus 1105 ~--g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~-~~e~YIHRI---ag--- 1175 (1858)
. ++++..+||+|+ +.+|.+++++|++|+++||||||+++||||||++++||++|.|. ...+|+||+ |+
T Consensus 683 ~~p~~~v~~lHG~m~---~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~ 759 (926)
T TIGR00580 683 LVPEARIAIAHGQMT---ENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKK 759 (926)
T ss_pred hCCCCeEEEecCCCC---HHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCC
Confidence 4 789999999999 99999999999999999999999999999999999999999986 567899998 22
Q ss_pred cceEEEEecC
Q psy15269 1176 HKEAIAFYDP 1185 (1858)
Q Consensus 1176 ~~~aitfvt~ 1185 (1858)
++.|+.|+.+
T Consensus 760 ~g~aill~~~ 769 (926)
T TIGR00580 760 KAYAYLLYPH 769 (926)
T ss_pred CeEEEEEECC
Confidence 2278888864
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-19 Score=244.16 Aligned_cols=269 Identities=11% Similarity=0.028 Sum_probs=181.8
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhh---hhhh-cccccccccccccCcc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIID---IDKF-VRDMRHVSNNILMSPN 945 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~d---l~~~-v~~l~~t~~~ll~~~~ 945 (1858)
.+.++-|+|+|+.|+-..+..+.....+. .+...+.||+....+... +.++ .++++.||+++.+...
T Consensus 124 ~aLVl~PTreLa~Qi~~~l~~l~~~~~~~---------v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~ 194 (1638)
T PRK14701 124 KCYIILPTTLLVKQTVEKIESFCEKANLD---------VRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFP 194 (1638)
T ss_pred eEEEEECHHHHHHHHHHHHHHHHhhcCCc---------eeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHH
Confidence 46899999999999999888776544331 244566788876655433 3344 7899999998886332
Q ss_pred ccccccccceeecccchhhhhh-HHhhhhhhcCCCchhhHHHHH-HHHHhHH-----------HHHHHhhhccCCCCccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNL-VYSYLIQQTALSPREKTVLEQ-IFSVVNK-----------FRAELLSAVSNAPSFDD 1012 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~-~~A~lL~~mGF~~~~~esL~~-Il~~Lpk-----------~RQtLLf~~~~~~s~~~ 1012 (1858)
.........+++||||+-+.-- ....+|..|||.++ +.+ +++.++. ....|-.
T Consensus 195 ~l~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e----~~~~~~~il~~~~~~~~~~~~~~~~~l~~---------- 260 (1638)
T PRK14701 195 EMKHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEE----IIEKAWKIIYLKKQGNIEDAMEKREILNK---------- 260 (1638)
T ss_pred HHhhCCCCEEEEECceeccccccccchhhhcCCChHH----HHHHHHHhhhcccccccchhhhhhhhhhh----------
Confidence 2222345678899999811100 01223444899999 543 2222211 0011100
Q ss_pred ccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc--ccEEEEEEECChhhHHHHHHHhhcC--CcEEEE
Q psy15269 1013 NNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV--HLVKQYLIRTPKSQKIVNLLSFLEG--KRSLIF 1088 (1858)
Q Consensus 1013 ~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~--~~I~Q~~~~v~~~~Kl~~Ll~lL~~--~k~IIF 1088 (1858)
..... ....+...+.|||++..-. ..+++++|..+.+..... .++.|.|+.+++.+| ..|+++++. .++|||
T Consensus 261 ~~~~~-~~~~~~ll~~SAT~~~r~~--~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~g~~gIVF 336 (1638)
T PRK14701 261 EIEKI-GNKIGCLIVASATGKAKGD--RVKLYRELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKLGKGGLIF 336 (1638)
T ss_pred hhhhc-CCCccEEEEEecCCCchhH--HHHHhhcCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhCCCCeEEE
Confidence 00000 0111223446999986411 123457777777765443 358899888776655 456666654 789999
Q ss_pred ecChHHH---HHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEec----cccccCCCCCC-cceEEEc
Q psy15269 1089 VKTYRDA---SRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMT----LSDFIGNDFTN-VEQVIIY 1160 (1858)
Q Consensus 1089 vnTk~~a---d~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVAT----DVAARGLDIp~-V~~VINy 1160 (1858)
|+|++.+ +.+++.|++.|+++..+||+ |.+++++|++|+++||||| |+++||||+|+ |++||||
T Consensus 337 ~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--------R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~ 408 (1638)
T PRK14701 337 VPIDEGAEKAEEIEKYLLEDGFKIELVSAK--------NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFY 408 (1638)
T ss_pred EeccccchHHHHHHHHHHHCCCeEEEecch--------HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEe
Confidence 9999864 89999999999999999994 7789999999999999999 59999999999 9999999
Q ss_pred CCCC---Chhhhhhhc
Q psy15269 1161 NLPL---SINHYVFQI 1173 (1858)
Q Consensus 1161 DlP~---~~e~YIHRI 1173 (1858)
|+|. +.+.|.|.+
T Consensus 409 ~~Pk~~~~~e~~~~~~ 424 (1638)
T PRK14701 409 GVPKFRFRVDLEDPTI 424 (1638)
T ss_pred CCCCCCcchhhcccch
Confidence 9999 887666643
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-18 Score=227.54 Aligned_cols=255 Identities=11% Similarity=0.013 Sum_probs=183.2
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCc-cccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSP-NYES 948 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~-~~~~ 948 (1858)
.+.++-|+|++|.++...+..... .++- ..+|. .+..+ ..+++..++++.|+++++... ..-.
T Consensus 47 ~ilvlqPrR~aA~qiA~rva~~~~-~~~g-------------~~VGy-~vr~~-~~~s~~t~I~v~T~G~Llr~l~~d~~ 110 (819)
T TIGR01970 47 KIIMLEPRRLAARSAAQRLASQLG-EAVG-------------QTVGY-RVRGE-NKVSRRTRLEVVTEGILTRMIQDDPE 110 (819)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhC-CCcC-------------cEEEE-EEccc-cccCCCCcEEEECCcHHHHHHhhCcc
Confidence 468999999999999887642221 1110 00111 11111 122334668899999999511 1234
Q ss_pred cccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCC
Q psy15269 949 DVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTD 1028 (1858)
Q Consensus 949 ~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~e 1028 (1858)
......+|+||+++ ++++++|.-. .+.+|.+.+++..|.+++
T Consensus 111 L~~v~~VIiDEaHE---------R~L~~Dl~L~---ll~~i~~~lr~dlqlIlm-------------------------- 152 (819)
T TIGR01970 111 LDGVGALIFDEFHE---------RSLDADLGLA---LALDVQSSLREDLKILAM-------------------------- 152 (819)
T ss_pred cccCCEEEEeccch---------hhhccchHHH---HHHHHHHhcCCCceEEEE--------------------------
Confidence 55677788999984 2555444322 134555666677788888
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHH-----HHHHHhhc--CCcEEEEecChHHHHHHHHH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKI-----VNLLSFLE--GKRSLIFVKTYRDASRIISA 1101 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl-----~~Ll~lL~--~~k~IIFvnTk~~ad~L~~~ 1101 (1858)
|||++.+. + .+|+.++..|.+... ...|+++|..++..+++ ..+.++++ .+++|||++++++++.+++.
T Consensus 153 SATl~~~~--l-~~~l~~~~vI~~~gr-~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~ 228 (819)
T TIGR01970 153 SATLDGER--L-SSLLPDAPVVESEGR-SFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQ 228 (819)
T ss_pred eCCCCHHH--H-HHHcCCCcEEEecCc-ceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHH
Confidence 99999764 3 567877766766533 23488888877655553 23444444 37899999999999999999
Q ss_pred Hhh---CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCCh----h-------
Q psy15269 1102 VQD---SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSI----N------- 1167 (1858)
Q Consensus 1102 L~~---~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~----e------- 1167 (1858)
|++ .++.+..+||+|+ +++|.++++.|++|+.+|+||||+|+||||||+|++|||+++|... +
T Consensus 229 L~~~~~~~~~v~pLHg~L~---~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~ 305 (819)
T TIGR01970 229 LAERLDSDVLICPLYGELS---LAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLE 305 (819)
T ss_pred HHhhcCCCcEEEEecCCCC---HHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceee
Confidence 987 4899999999999 9999999999999999999999999999999999999999999743 3
Q ss_pred -------hhhhhc--cCc---ceEEEEecC
Q psy15269 1168 -------HYVFQI--AGH---KEAIAFYDP 1185 (1858)
Q Consensus 1168 -------~YIHRI--ag~---~~aitfvt~ 1185 (1858)
+|+||+ +|+ |.+|.|++.
T Consensus 306 ~~~iSkasa~QR~GRAGR~~~G~cyrL~t~ 335 (819)
T TIGR01970 306 TVRISQASATQRAGRAGRLEPGVCYRLWSE 335 (819)
T ss_pred EEEECHHHHHhhhhhcCCCCCCEEEEeCCH
Confidence 489999 332 389999987
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG1428|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-17 Score=202.79 Aligned_cols=326 Identities=24% Similarity=0.319 Sum_probs=210.5
Q ss_pred eCCeEEEEcCCCCCCCCcCCCCCcccccccCCCCCeEEEEEcCCEEEEEe--cCCcEEEEccc-ccCCCCCCCCCCceee
Q psy15269 186 AHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLD--STGGLLVYGKG-WLGLANTTIQPLPKRV 262 (1858)
Q Consensus 186 s~g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~~IkqVA~G~~hTlaLt--~dG~VyawG~N-qLGlg~~~~~~~P~~V 262 (1858)
.+|+||.-|... .+|.-........ ...+.+|++|+.|-....|+. .+|-++.-|++ ..|. -.+
T Consensus 496 ~sGKvYYaGn~t--~~Gl~e~G~nWmE--L~l~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k~~~~--------~Rr- 562 (3738)
T KOG1428|consen 496 RSGKVYYAGNGT--RFGLFETGNNWME--LCLPEPIVQISVGIDTIMFRSGAGHGWIASVDDKKRNGR--------LRR- 562 (3738)
T ss_pred cCccEEEecCcc--EEeEEccCCceEE--ecCCCceEEEEeccchhheeeccCcceEEeccCcccccc--------hhh-
Confidence 679999999643 3443333332221 123468999999998888876 45656655533 2111 111
Q ss_pred cCccCcceEEEEEecCcEEE-EEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCC
Q psy15269 263 PLEAAIVSLSVSKCSEAHVL-TVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDG 341 (1858)
Q Consensus 263 ~~~~~i~~Is~Ia~G~~Htl-aLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG 341 (1858)
..+.+-++|+.+ |+..|.+ .+++||++|..|....- .......+.+ +.+.-|.+++-|..|.++++.+|
T Consensus 563 ~~P~n~rKIv~v-~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln~-L~~~~isslAlGKsH~~av~rNG 632 (3738)
T KOG1428|consen 563 LVPSNRRKIVHV-CASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLNG-LDNVMISSLALGKSHGVAVTRNG 632 (3738)
T ss_pred cCCCCcceeEEE-eeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhhc-cccceeehhhccccceeEEEeCC
Confidence 112234455555 5566655 67899999999863210 0011223333 77888999999999999999999
Q ss_pred eEEEEecCCCCCCCCCCCCcc-ccccccc----------------cCCCc---------eEEeecCceEEEEEcCCCEEE
Q psy15269 342 LLYTWGEGDHGRLGHGDLKSR-HTPTLVT----------------ELSDV---------GAVSCGESHTLVLSQDGHTVW 395 (1858)
Q Consensus 342 ~VYtWG~N~~GQLG~G~~~~~-~~P~~V~----------------~l~~I---------~~IAcG~~HTlaLt~dG~tVy 395 (1858)
.||+||-|+.+|+|.-..... ..|..-. ....| .-++||. +-...| ++.
T Consensus 633 ~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~----~~RP~G-~mC 707 (3738)
T KOG1428|consen 633 HLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGR----VPRPKG-TMC 707 (3738)
T ss_pred eEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhccccccccccccc----CCCCCC-ccc
Confidence 999999999999998532211 1111100 00001 1222322 112456 477
Q ss_pred EEeCCCCCCCCCC--------CC-------------------CceeccEEeee---cccccEEEEEecCceEEEEecCCc
Q psy15269 396 SMGSGNLGKLGHE--------DT-------------------GKVTTPKVIEA---LRKFRVRKVCAGTSFSVALTWDGL 445 (1858)
Q Consensus 396 sWG~N~~GQLG~g--------~~-------------------~~~~~P~~V~~---l~~~~Iv~IaaG~~hSlALT~dG~ 445 (1858)
.+|.++.+.+--| .. .....|..|.. ..+.++.+|+||..|++.|.+|++
T Consensus 708 ~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~ 787 (3738)
T KOG1428|consen 708 HCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRR 787 (3738)
T ss_pred ccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCc
Confidence 7777766544221 00 01223444432 345689999999999999999999
Q ss_pred EEEEe------CCCCCCCccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCC--cccCe
Q psy15269 446 VFWWG------LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNP--VDQPS 517 (1858)
Q Consensus 446 Vy~WG------LG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~--vs~P~ 517 (1858)
||+|| +|.|... ....|+.|..+.+..|++|++|.+|++++..||.||+||.-..||||......+ -..|.
T Consensus 788 VfTFG~~~HGQLG~GDt~-Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe 866 (3738)
T KOG1428|consen 788 VFTFGSNCHGQLGVGDTL-SKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPE 866 (3738)
T ss_pred EEEecCCcccccCcCccc-cCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCCC
Confidence 99999 6666654 356799999999999999999999999999999999999999999998654321 23566
Q ss_pred eeecCC---CceEEEEEecCcceEEE
Q psy15269 518 KVVGLE---DVCVRQICAGSLFSIAY 540 (1858)
Q Consensus 518 ~V~~L~---~~~I~~Ia~G~~hS~al 540 (1858)
++.++. +.....|.+.++.++.-
T Consensus 867 ~v~~~G~~f~~~A~WIGAdGDss~i~ 892 (3738)
T KOG1428|consen 867 KVSGFGPGFNAFAGWIGADGDSSIIH 892 (3738)
T ss_pred cCCCCCccccccceeeccCCCcceee
Confidence 665542 33456677777766654
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=221.57 Aligned_cols=283 Identities=18% Similarity=0.172 Sum_probs=181.3
Q ss_pred cccccCccHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCC---------CCCCCccchh
Q psy15269 833 IHRSMYPTLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLL---------GPPEAHEETE 903 (1858)
Q Consensus 833 ~~~~~~~~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~---------~~pl~~~e~~ 903 (1858)
|...-+ .+-.++|+|+.|.+.... +.. .+...+.+|.|+|+||.++-+.+...+. |..+.
T Consensus 55 PTGSGK-Tlaa~Lpil~~l~~~~~~----~~~-~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~----- 123 (876)
T PRK13767 55 PTGSGK-TLAAFLAIIDELFRLGRE----GEL-EDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELP----- 123 (876)
T ss_pred CCCCcH-HHHHHHHHHHHHHhhccc----cCC-CCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC-----
Confidence 433444 334566777666543211 111 2344578899999999988654432110 11110
Q ss_pred hhccccccccccccCCchhhhhhhhhccccccccccccc---Cccc-cccccccceeecccchhhhhhHHhhhhhhcCCC
Q psy15269 904 TVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM---SPNY-ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALS 979 (1858)
Q Consensus 904 ~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~---~~~~-~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~ 979 (1858)
-++..+..|+.....+...+.+..++++.||.++.+ +..+ ........+|+||++. |.+....
T Consensus 124 ---~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~----------l~~~~RG 190 (876)
T PRK13767 124 ---EIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHS----------LAENKRG 190 (876)
T ss_pred ---CeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhh----------hccCccH
Confidence 134456778877666666676778899999998864 2222 2344566677888877 6655444
Q ss_pred chhhHHHHHHHHHhHH----HHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhc-------CCCE
Q psy15269 980 PREKTVLEQIFSVVNK----FRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEV-------EDPI 1048 (1858)
Q Consensus 980 ~~~~esL~~Il~~Lpk----~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L-------~dpv 1048 (1858)
.. ++.+++.+.+ ..|++.+ |||+++ .+++++... ..++
T Consensus 191 ~~----l~~~L~rL~~l~~~~~q~Igl--------------------------SATl~~-~~~va~~L~~~~~~~~~r~~ 239 (876)
T PRK13767 191 VH----LSLSLERLEELAGGEFVRIGL--------------------------SATIEP-LEEVAKFLVGYEDDGEPRDC 239 (876)
T ss_pred HH----HHHHHHHHHHhcCCCCeEEEE--------------------------ecccCC-HHHHHHHhcCccccCCCCce
Confidence 44 4444444432 3345555 898765 233443221 1122
Q ss_pred EEE-EccCCcccEEEE-----EEECCh----hhHHHHHHHhhcC-CcEEEEecChHHHHHHHHHHhhC------CCeEEE
Q psy15269 1049 MKL-VKPSSVHLVKQY-----LIRTPK----SQKIVNLLSFLEG-KRSLIFVKTYRDASRIISAVQDS------NMMTIP 1111 (1858)
Q Consensus 1049 ~I~-v~~~~~~~I~Q~-----~~~v~~----~~Kl~~Ll~lL~~-~k~IIFvnTk~~ad~L~~~L~~~------g~~~~~ 1111 (1858)
.+. ........+... ++.... ......+..+++. .++||||||++.|+.++..|++. +..+..
T Consensus 240 ~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~ 319 (876)
T PRK13767 240 EIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGA 319 (876)
T ss_pred EEEccCCCccceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceee
Confidence 221 110111111110 011111 1223344455543 78999999999999999999872 467999
Q ss_pred EecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc
Q psy15269 1112 MSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1112 LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI 1173 (1858)
+||+|+ +.+|..++++||+|+++|||||++++||||+++|++|||||.|.+..+|+||+
T Consensus 320 hHg~ls---~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRi 378 (876)
T PRK13767 320 HHSSLS---REVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRI 378 (876)
T ss_pred eeCCCC---HHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhc
Confidence 999999 99999999999999999999999999999999999999999999999999999
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-18 Score=224.90 Aligned_cols=255 Identities=13% Similarity=0.079 Sum_probs=181.0
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCcc-ccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPN-YES 948 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~-~~~ 948 (1858)
.+.++-|+|++|.++.+.+.... +.++- ..+ ....+|.. ..++..++++.||++++.... --.
T Consensus 50 ~ilvlqPrR~aA~qia~rva~~l-~~~~g-~~V--------Gy~vr~~~------~~~~~t~I~v~T~G~Llr~l~~d~~ 113 (812)
T PRK11664 50 KIIMLEPRRLAARNVAQRLAEQL-GEKPG-ETV--------GYRMRAES------KVGPNTRLEVVTEGILTRMIQRDPE 113 (812)
T ss_pred eEEEECChHHHHHHHHHHHHHHh-CcccC-ceE--------EEEecCcc------ccCCCCcEEEEChhHHHHHHhhCCC
Confidence 46899999999999988754322 11110 000 01111111 112334578999999985211 124
Q ss_pred cccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCC
Q psy15269 949 DVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTD 1028 (1858)
Q Consensus 949 ~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~e 1028 (1858)
......+|+||+++ . ..++.+.-. .+.+|++.+++..|.+++
T Consensus 114 L~~v~~IIlDEaHE----R-----~l~~Dl~L~---ll~~i~~~lr~~lqlilm-------------------------- 155 (812)
T PRK11664 114 LSGVGLVILDEFHE----R-----SLQADLALA---LLLDVQQGLRDDLKLLIM-------------------------- 155 (812)
T ss_pred cCcCcEEEEcCCCc----c-----ccccchHHH---HHHHHHHhCCccceEEEE--------------------------
Confidence 56677888999987 1 222211111 133455566666677788
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHH-----HHHHhhc--CCcEEEEecChHHHHHHHHH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIV-----NLLSFLE--GKRSLIFVKTYRDASRIISA 1101 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~-----~Ll~lL~--~~k~IIFvnTk~~ad~L~~~ 1101 (1858)
|||++.+ .+ ..|+.++..|.+... ...|+++|..++..+++. .+.+++. .+++|||++++++++.+++.
T Consensus 156 SATl~~~--~l-~~~~~~~~~I~~~gr-~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~ 231 (812)
T PRK11664 156 SATLDND--RL-QQLLPDAPVIVSEGR-SFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQ 231 (812)
T ss_pred ecCCCHH--HH-HHhcCCCCEEEecCc-cccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHH
Confidence 9999875 33 467777766766533 234888888877666654 3444554 37899999999999999999
Q ss_pred Hhh---CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCCh------------
Q psy15269 1102 VQD---SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSI------------ 1166 (1858)
Q Consensus 1102 L~~---~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~------------ 1166 (1858)
|++ .++.+..+||+|+ +.+|.++++.|++|+.+|+||||+|+|||||++|++|||+++|...
T Consensus 232 L~~~~~~~~~v~~Lhg~l~---~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~ 308 (812)
T PRK11664 232 LASRVASDVLLCPLYGALS---LAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLV 308 (812)
T ss_pred HHHhccCCceEEEeeCCCC---HHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeE
Confidence 997 5889999999999 9999999999999999999999999999999999999999988654
Q ss_pred ------hhhhhhc--cCc---ceEEEEecC
Q psy15269 1167 ------NHYVFQI--AGH---KEAIAFYDP 1185 (1858)
Q Consensus 1167 ------e~YIHRI--ag~---~~aitfvt~ 1185 (1858)
.+|+||. +|+ |.++.|+++
T Consensus 309 ~~~iSkasa~QR~GRaGR~~~G~cyrL~t~ 338 (812)
T PRK11664 309 TQRISQASMTQRAGRAGRLEPGICLHLYSK 338 (812)
T ss_pred EEeechhhhhhhccccCCCCCcEEEEecCH
Confidence 4799999 332 289999997
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=214.97 Aligned_cols=221 Identities=16% Similarity=0.177 Sum_probs=158.7
Q ss_pred ccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcC--CCchhhHHHHHHHHHhHHHHHHHhhhcc
Q psy15269 930 VRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTA--LSPREKTVLEQIFSVVNKFRAELLSAVS 1005 (1858)
Q Consensus 930 v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mG--F~~~~~esL~~Il~~Lpk~RQtLLf~~~ 1005 (1858)
++++..||.++.. ..+.........+++|||+. +.+.| |.++ . ..+...+..+-.
T Consensus 104 ~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~----------i~~~g~~frp~----y----~~l~~l~~~~~~--- 162 (591)
T TIGR01389 104 LKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHC----------VSQWGHDFRPE----Y----QRLGSLAERFPQ--- 162 (591)
T ss_pred CCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcc----------cccccCccHHH----H----HHHHHHHHhCCC---
Confidence 5677889988764 22222334556677888877 66666 5555 3 333333322100
Q ss_pred CCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcC--CCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhcC-
Q psy15269 1006 NAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVE--DPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEG- 1082 (1858)
Q Consensus 1006 ~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~--dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~- 1082 (1858)
. .....|||.++.+.+.....+. +|..+ +......++. +...++.++...+..++..
T Consensus 163 -------------~----~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~~~~r~nl~--~~v~~~~~~~~~l~~~l~~~ 222 (591)
T TIGR01389 163 -------------V----PRIALTATADAETRQDIRELLRLADANEF-ITSFDRPNLR--FSVVKKNNKQKFLLDYLKKH 222 (591)
T ss_pred -------------C----CEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ecCCCCCCcE--EEEEeCCCHHHHHHHHHHhc
Confidence 0 0112289999998876666553 44433 2222233332 2233445566667766653
Q ss_pred --CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEc
Q psy15269 1083 --KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIY 1160 (1858)
Q Consensus 1083 --~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINy 1160 (1858)
.++||||+|++.|+.+++.|+..|+++..+||+|+ +.+|..++++|++|+++|||||+++++|||+|+|++||||
T Consensus 223 ~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~---~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~ 299 (591)
T TIGR01389 223 RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLS---NKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHY 299 (591)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCC---HHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEc
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCCChhhhhhhc--cCc---c-eEEEEecCcccHHHHHHH
Q psy15269 1161 NLPLSINHYVFQI--AGH---K-EAIAFYDPVADIGLASSL 1195 (1858)
Q Consensus 1161 DlP~~~e~YIHRI--ag~---~-~aitfvt~~~e~~~l~~I 1195 (1858)
|+|.+.+.|+||+ +|+ . .++.|+++ .|...++.+
T Consensus 300 ~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~-~d~~~~~~~ 339 (591)
T TIGR01389 300 DMPGNLESYYQEAGRAGRDGLPAEAILLYSP-ADIALLKRR 339 (591)
T ss_pred CCCCCHHHHhhhhccccCCCCCceEEEecCH-HHHHHHHHH
Confidence 9999999999999 222 2 78888887 666555544
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=207.13 Aligned_cols=252 Identities=12% Similarity=0.045 Sum_probs=176.8
Q ss_pred ceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhh---hhhhh-cccccccccccccCccc
Q psy15269 871 LWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAII---DIDKF-VRDMRHVSNNILMSPNY 946 (1858)
Q Consensus 871 ~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~---dl~~~-v~~l~~t~~~ll~~~~~ 946 (1858)
+.++.|+|+||.|+-..+..++....+ +..++.||........ .+.++ .++++.||..+.+.-.
T Consensus 313 ~lilaPT~~LA~Q~~~~l~~l~~~~~i-----------~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~- 380 (681)
T PRK10917 313 AALMAPTEILAEQHYENLKKLLEPLGI-----------RVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVE- 380 (681)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhcCc-----------EEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccch-
Confidence 589999999999999888877755443 4578899987544333 34444 7889999987754322
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNS 1026 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~ 1026 (1858)
.....-+|+||++| + |. . .+..+.......+.|++
T Consensus 381 --~~~l~lvVIDE~Hr----f---------g~--~----qr~~l~~~~~~~~iL~~------------------------ 415 (681)
T PRK10917 381 --FHNLGLVIIDEQHR----F---------GV--E----QRLALREKGENPHVLVM------------------------ 415 (681)
T ss_pred --hcccceEEEechhh----h---------hH--H----HHHHHHhcCCCCCEEEE------------------------
Confidence 23456688999988 3 21 1 12222222223445555
Q ss_pred CCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHH-HHHHHhhc-CCcEEEEecC--------hHHHH
Q psy15269 1027 TDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKI-VNLLSFLE-GKRSLIFVKT--------YRDAS 1096 (1858)
Q Consensus 1027 ~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl-~~Ll~lL~-~~k~IIFvnT--------k~~ad 1096 (1858)
|||+.+....+......++..|...+.....+++.+....+.+++ ..+...+. +.+++|||++ ...++
T Consensus 416 --SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~ 493 (681)
T PRK10917 416 --TATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAE 493 (681)
T ss_pred --eCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHH
Confidence 999877666555433345444444334344566666655444443 34444443 3799999984 45677
Q ss_pred HHHHHHhhC--CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhh-hc
Q psy15269 1097 RIISAVQDS--NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVF-QI 1173 (1858)
Q Consensus 1097 ~L~~~L~~~--g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIH-RI 1173 (1858)
.+++.|++. ++++..+||+|+ +.+|.+++++|++|+++|||||++++||+|+|++++||+||.|.....|+| |+
T Consensus 494 ~~~~~L~~~~~~~~v~~lHG~m~---~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~ 570 (681)
T PRK10917 494 ETYEELQEAFPELRVGLLHGRMK---PAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLR 570 (681)
T ss_pred HHHHHHHHHCCCCcEEEEeCCCC---HHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHh
Confidence 888888865 578999999999 999999999999999999999999999999999999999999986555555 55
Q ss_pred ---cC---cceEEEEec
Q psy15269 1174 ---AG---HKEAIAFYD 1184 (1858)
Q Consensus 1174 ---ag---~~~aitfvt 1184 (1858)
|+ ++.|+.++.
T Consensus 571 GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 571 GRVGRGAAQSYCVLLYK 587 (681)
T ss_pred hcccCCCCceEEEEEEC
Confidence 22 238898885
|
|
| >PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-16 Score=161.24 Aligned_cols=114 Identities=31% Similarity=0.449 Sum_probs=100.5
Q ss_pred CceEEEEEEEEeecCCCcceEEEEEeecc---c-cCCCCCCCceeEEEeCCceeeeCCCCCccCCCcCC-CCEEEEEEec
Q psy15269 1449 RGCYQWKFLIVNEHKGNEGTCIGVTRWPI---R-DYNHRTTGDMWLYRAYSGNVYHSGEQTTMLPSFTQ-GDYITVVLDM 1523 (1858)
Q Consensus 1449 ~G~~~W~~~i~~~~~~~~~~~vGva~~~~---~-~~~~~~~~~~W~y~~~~g~~~h~~~~~~~~~~~~~-gd~i~v~lDm 1523 (1858)
+|+||||++|+.... +.||+++.+. . ....+.+..+|+|+.+++..+|++....+.+.+.. ||+|||.||+
T Consensus 1 sG~~YwEV~v~~~~~----~~iGv~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~dvIG~~lD~ 76 (124)
T PF00622_consen 1 SGKHYWEVEVDSGGS----ISIGVATSSASVSGDENLSGYDPFSWGFHGDGGKKYHGGTSEETGSPFQEPGDVIGCGLDL 76 (124)
T ss_dssp SSEEEEEEEETGGCT----EEEEEEETTSEESSSTS-TTSSTTEEEEETTTTTEEESTSSSECSCTSSTTTSEEEEEEET
T ss_pred CcCEEEEEEEecCcC----EEEEEeECccccCCccccCCccccceeeeccccccceeecccccccccccCCcEEEEEEee
Confidence 699999999988775 9999999999 3 66777888999999999999999999888899998 9999999999
Q ss_pred cCceEEEEeCCcccc-ccccCCCCCCceeEEEEEeecCCCCCeEEEEE
Q psy15269 1524 DAQTLSFGKNGEEPH-LAFQDLDTSAPLYPIVLFYSTNANGEKVKITD 1570 (1858)
Q Consensus 1524 ~~~tl~f~~ng~~~G-vAF~~l~~~~~lyP~Vs~y~~~~~~~~v~~~~ 1570 (1858)
++++|+|++||+.++ .+|++++..++|||+|++++ +.+|++..
T Consensus 77 ~~g~l~F~~ng~~~~~~~f~~~~~~~~l~P~v~~~~----~~~~~~n~ 120 (124)
T PF00622_consen 77 DNGELSFYKNGKFLGIYAFTDIDFSEPLYPAVSLGG----GQSVELNF 120 (124)
T ss_dssp TTTEEEEEETTEEEEEEEEESCTTSSSBEEEEEEES----TSEEEEEE
T ss_pred cccEEEEEECCccceeEEEECCCCCCcEEEEEEecC----CCEEEEEe
Confidence 999999999999999 99999988778999999976 33565543
|
Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A .... |
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-15 Score=195.42 Aligned_cols=155 Identities=9% Similarity=-0.050 Sum_probs=131.3
Q ss_pred CCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhcC-----CcEEEEecChHHHHHHHHHH
Q psy15269 1028 DSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEG-----KRSLIFVKTYRDASRIISAV 1102 (1858)
Q Consensus 1028 eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~-----~k~IIFvnTk~~ad~L~~~L 1102 (1858)
.|+|.+...+++.+.|..+|+.|...........+.++.+++.+|...|.+.+.. .++||||+|++.++.+++.|
T Consensus 414 mTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L 493 (656)
T PRK12898 414 MTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALL 493 (656)
T ss_pred ccCcChHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHH
Confidence 6789998899999999999988877655544466777888889999999888743 57999999999999999999
Q ss_pred hhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCC---Ccc-----eEEEcCCCCChhhhhhhc-
Q psy15269 1103 QDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFT---NVE-----QVIIYNLPLSINHYVFQI- 1173 (1858)
Q Consensus 1103 ~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp---~V~-----~VINyDlP~~~e~YIHRI- 1173 (1858)
++.|+++..|||+++ +|++.+..|+.++..|+||||+|+||+||+ +|. ||||||+|.+.+.|+||+
T Consensus 494 ~~~gi~~~~Lhg~~~-----~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~G 568 (656)
T PRK12898 494 REAGLPHQVLNAKQD-----AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAG 568 (656)
T ss_pred HHCCCCEEEeeCCcH-----HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcc
Confidence 999999999999764 555566667777778999999999999999 776 999999999999999999
Q ss_pred --cC---cceEEEEecCccc
Q psy15269 1174 --AG---HKEAIAFYDPVAD 1188 (1858)
Q Consensus 1174 --ag---~~~aitfvt~~~e 1188 (1858)
|+ .|.+++|++. +|
T Consensus 569 RTGRqG~~G~s~~~is~-eD 587 (656)
T PRK12898 569 RCGRQGDPGSYEAILSL-ED 587 (656)
T ss_pred cccCCCCCeEEEEEech-hH
Confidence 22 2389999997 44
|
|
| >smart00449 SPRY Domain in SPla and the RYanodine Receptor | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-16 Score=161.15 Aligned_cols=107 Identities=30% Similarity=0.386 Sum_probs=94.4
Q ss_pred CceEEEEEEEEeecCCCcceEEEEEeeccc---cCCCCCCCceeEEEeCCceeeeCCCCCccCCCcCC-CCEEEEEEecc
Q psy15269 1449 RGCYQWKFLIVNEHKGNEGTCIGVTRWPIR---DYNHRTTGDMWLYRAYSGNVYHSGEQTTMLPSFTQ-GDYITVVLDMD 1524 (1858)
Q Consensus 1449 ~G~~~W~~~i~~~~~~~~~~~vGva~~~~~---~~~~~~~~~~W~y~~~~g~~~h~~~~~~~~~~~~~-gd~i~v~lDm~ 1524 (1858)
+|+||||++|.. +....||+++.++. +...+++..+|+|+..+|..||++....+.+.+.. ||+|||.||++
T Consensus 1 sG~~YwEV~v~~----~~~~~vGv~~~~~~r~~~~~~G~~~~sw~~~~~~g~~~~~~~~~~~~~~~~~~gd~iGv~lD~~ 76 (122)
T smart00449 1 SGRHYFEVEIFD----GGHWRVGVATKSVPRGYFALLGEDKGSWGYDGDGGKKYHNSTGPEYGLPLQEPGDVIGCFLDLE 76 (122)
T ss_pred CCcEEEEEEEcC----CCeEEEEEEcCccCCCccccCCCCCCEEEEEcCCCcEEeCCCCCccCccccCCCCEEEEEEECC
Confidence 699999999986 23488999998887 67889999999999999999999877667778886 99999999999
Q ss_pred CceEEEEeCCccc-cccccCCCCCCceeEEEEEeec
Q psy15269 1525 AQTLSFGKNGEEP-HLAFQDLDTSAPLYPIVLFYST 1559 (1858)
Q Consensus 1525 ~~tl~f~~ng~~~-GvAF~~l~~~~~lyP~Vs~y~~ 1559 (1858)
+|+|+|++||+.+ |+||.+++-..++||+|++++.
T Consensus 77 ~g~l~F~~ng~~~~~~~f~~~~~~~~l~P~~~~~~~ 112 (122)
T smart00449 77 AGTISFYKNGKYLHGLAFFDVKFSGPLYPAVSLGSG 112 (122)
T ss_pred CCEEEEEECCCEeeeEEEeccCCCCcEeeEEEcCCC
Confidence 9999999999999 8999999765579999999643
|
Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues. |
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.7e-16 Score=207.17 Aligned_cols=242 Identities=12% Similarity=0.044 Sum_probs=170.6
Q ss_pred HhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCcc-ccccccccc
Q psy15269 876 MERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPN-YESDVNKYS 954 (1858)
Q Consensus 876 ~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~-~~~~~~~~~ 954 (1858)
..|++|.+|...++.-+. ..+ --++++..+ .++..++++.|||+++..-. -........
T Consensus 130 AArsLA~RVA~El~~~lG-~~V----------------GY~vrf~~~---~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~ 189 (1294)
T PRK11131 130 AARTVANRIAEELETELG-GCV----------------GYKVRFNDQ---VSDNTMVKLMTDGILLAEIQQDRLLMQYDT 189 (1294)
T ss_pred HHHHHHHHHHHHHhhhhc-cee----------------ceeecCccc---cCCCCCEEEEChHHHHHHHhcCCccccCcE
Confidence 489999999988764211 000 001222222 23467789999999996221 123556677
Q ss_pred eeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCCCCCCcH
Q psy15269 955 VLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWG 1034 (1858)
Q Consensus 955 ~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~ 1034 (1858)
+|+|||++ ++++++|... .+..++..- +.+|.+++ |||++.
T Consensus 190 IIIDEAHE---------RsLn~DfLLg---~Lk~lL~~r-pdlKvILm--------------------------SATid~ 230 (1294)
T PRK11131 190 IIIDEAHE---------RSLNIDFILG---YLKELLPRR-PDLKVIIT--------------------------SATIDP 230 (1294)
T ss_pred EEecCccc---------cccccchHHH---HHHHhhhcC-CCceEEEe--------------------------eCCCCH
Confidence 78999983 2777887643 133333221 23577788 999975
Q ss_pred hHHHHHHHhcCCCEEEEEccCCcccEEEEEEECCh------hhHHHHHHHhhc------CCcEEEEecChHHHHHHHHHH
Q psy15269 1035 DIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPK------SQKIVNLLSFLE------GKRSLIFVKTYRDASRIISAV 1102 (1858)
Q Consensus 1035 ~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~------~~Kl~~Ll~lL~------~~k~IIFvnTk~~ad~L~~~L 1102 (1858)
+++++.|.+.|+ |.+.... ..++++|..+.. .+++..++..+. .+++|||++++++++.+++.|
T Consensus 231 --e~fs~~F~~apv-I~V~Gr~-~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L 306 (1294)
T PRK11131 231 --ERFSRHFNNAPI-IEVSGRT-YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADAL 306 (1294)
T ss_pred --HHHHHHcCCCCE-EEEcCcc-ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHH
Confidence 578888877775 6665432 347777776642 334444444321 278999999999999999999
Q ss_pred hhCCCe---EEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcC---------------CCC
Q psy15269 1103 QDSNMM---TIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYN---------------LPL 1164 (1858)
Q Consensus 1103 ~~~g~~---~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyD---------------lP~ 1164 (1858)
++.+++ +..+||+|+ +.+|.++++. .|+.+|+||||+|+||||||+|++|||++ +|.
T Consensus 307 ~~~~~~~~~VlpLhg~Ls---~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~ 381 (1294)
T PRK11131 307 NKLNLRHTEILPLYARLS---NSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPI 381 (1294)
T ss_pred HhcCCCcceEeecccCCC---HHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCe
Confidence 987765 678999999 9999999886 47889999999999999999999999996 565
Q ss_pred Ch---hhhhhhccC-----cceEEEEecC
Q psy15269 1165 SI---NHYVFQIAG-----HKEAIAFYDP 1185 (1858)
Q Consensus 1165 ~~---e~YIHRIag-----~~~aitfvt~ 1185 (1858)
.+ ++|+||+|+ .|.+|.|+++
T Consensus 382 ~~iSkasa~QRaGRAGR~~~G~c~rLyte 410 (1294)
T PRK11131 382 EPISQASANQRKGRCGRVSEGICIRLYSE 410 (1294)
T ss_pred eecCHhhHhhhccccCCCCCcEEEEeCCH
Confidence 44 789999922 2379999996
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-15 Score=193.98 Aligned_cols=253 Identities=11% Similarity=0.029 Sum_probs=166.1
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhh---hh-cccccccccccccCcc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDID---KF-VRDMRHVSNNILMSPN 945 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~---~~-v~~l~~t~~~ll~~~~ 945 (1858)
.+.++.|+|+||.|+-+.+..++....+ +..++.||+........++ ++ .++++.|+..+.+...
T Consensus 286 qvlilaPT~~LA~Q~~~~~~~l~~~~gi-----------~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~ 354 (630)
T TIGR00643 286 QVALMAPTEILAEQHYNSLRNLLAPLGI-----------EVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVE 354 (630)
T ss_pred cEEEECCHHHHHHHHHHHHHHHhcccCc-----------EEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcccc
Confidence 3588999999999999888877665433 4577889987655333333 32 5788999887654332
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhH--HHHHHHhhhccCCCCcccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVN--KFRAELLSAVSNAPSFDDNNVSMGVTSTQ 1023 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lp--k~RQtLLf~~~~~~s~~~~~~s~~~~~~~ 1023 (1858)
.....-+|+||+++ | |.... ..+.+..+ ...+.+++
T Consensus 355 ---~~~l~lvVIDEaH~----f---------g~~qr-----~~l~~~~~~~~~~~~l~~--------------------- 392 (630)
T TIGR00643 355 ---FKRLALVIIDEQHR----F---------GVEQR-----KKLREKGQGGFTPHVLVM--------------------- 392 (630)
T ss_pred ---ccccceEEEechhh----c---------cHHHH-----HHHHHhcccCCCCCEEEE---------------------
Confidence 23456788999988 3 21111 11111111 02334444
Q ss_pred cccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhH-HHHHHHhhc-CCcEEEEecCh--------H
Q psy15269 1024 HNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQK-IVNLLSFLE-GKRSLIFVKTY--------R 1093 (1858)
Q Consensus 1024 ~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~K-l~~Ll~lL~-~~k~IIFvnTk--------~ 1093 (1858)
|||+.+....++...--+...+...+.....+...++.....++ +..+.+.+. ..+++|||++. +
T Consensus 393 -----SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~ 467 (630)
T TIGR00643 393 -----SATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLK 467 (630)
T ss_pred -----eCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcchHHHHHHHHHHHHHhCCcEEEEEccccccccchHH
Confidence 99976655444332211222222222222335555544333222 222223332 47899999865 5
Q ss_pred HHHHHHHHHhh--CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhh
Q psy15269 1094 DASRIISAVQD--SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVF 1171 (1858)
Q Consensus 1094 ~ad~L~~~L~~--~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIH 1171 (1858)
.++.+++.|++ .++.+..+||+|+ +.+|.+++++|++|+.+|||||+++++|+|+|++++||+||.|.....|+|
T Consensus 468 ~a~~~~~~L~~~~~~~~v~~lHG~m~---~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lh 544 (630)
T TIGR00643 468 AAEALYERLKKAFPKYNVGLLHGRMK---SDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLH 544 (630)
T ss_pred HHHHHHHHHHhhCCCCcEEEEeCCCC---HHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHH
Confidence 67788888876 4788999999999 999999999999999999999999999999999999999999986555555
Q ss_pred -hc---cC---cceEEEEe
Q psy15269 1172 -QI---AG---HKEAIAFY 1183 (1858)
Q Consensus 1172 -RI---ag---~~~aitfv 1183 (1858)
|+ |+ ++.++.++
T Consensus 545 Q~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 545 QLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred HHhhhcccCCCCcEEEEEE
Confidence 65 22 23788888
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-15 Score=198.88 Aligned_cols=131 Identities=14% Similarity=0.233 Sum_probs=108.4
Q ss_pred hhHHHHHHHhhc---CCcEEEEecChHHHHHHHHHHh-hCCCeEEEEecCCCCccHHHHHHHHHHHhcC--CCcEEEecc
Q psy15269 1070 SQKIVNLLSFLE---GKRSLIFVKTYRDASRIISAVQ-DSNMMTIPMSNNGTSWSHVECLELLNLFNTG--KSSLVIMTL 1143 (1858)
Q Consensus 1070 ~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~-~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G--~~~ILVATD 1143 (1858)
..|+..|.++++ .+|+||||+++..++.+.+.|+ +.|+++..+||+|+ +.+|.++++.|+++ ..+||||||
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s---~~eR~~~~~~F~~~~~~~~VLIsTd 554 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMS---IIERDRAAAYFADEEDGAQVLLCSE 554 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCC---HHHHHHHHHHHhcCCCCccEEEech
Confidence 457777777776 4899999999999999999995 67999999999999 99999999999984 699999999
Q ss_pred ccccCCCCCCcceEEEcCCCCChhhhhhhc-----cCcceEEEEecCcccHHHHHHHHHHHhhcC
Q psy15269 1144 SDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AGHKEAIAFYDPVADIGLASSLIKLLEYSN 1203 (1858)
Q Consensus 1144 VAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag~~~aitfvt~~~e~~~l~~Ie~~l~~~~ 1203 (1858)
+++||+|++.+++|||||+|++|+.|+||| .|++..+..+.+..+....+.|.+.+....
T Consensus 555 vgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 555 IGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred hhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhc
Confidence 999999999999999999999999999999 333333433333344445666666666644
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-14 Score=187.98 Aligned_cols=117 Identities=12% Similarity=0.049 Sum_probs=103.6
Q ss_pred EEECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcE
Q psy15269 1064 LIRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSL 1138 (1858)
Q Consensus 1064 ~~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~I 1138 (1858)
.+.+...+|...+++.+. ..++||||+|++.++.+++.|.+.|+++..|||++. +++|..+...|+.| +|
T Consensus 405 ~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~---~~e~~~i~~ag~~g--~V 479 (790)
T PRK09200 405 KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNA---AKEAQIIAEAGQKG--AV 479 (790)
T ss_pred eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCcc---HHHHHHHHHcCCCC--eE
Confidence 345677889888888773 378999999999999999999999999999999998 88888888888776 79
Q ss_pred EEeccccccCCCC---CCcc-----eEEEcCCCCChhhhhhhc---cC---cceEEEEecC
Q psy15269 1139 VIMTLSDFIGNDF---TNVE-----QVIIYNLPLSINHYVFQI---AG---HKEAIAFYDP 1185 (1858)
Q Consensus 1139 LVATDVAARGLDI---p~V~-----~VINyDlP~~~e~YIHRI---ag---~~~aitfvt~ 1185 (1858)
+||||+|+||+|| ++|. ||||||+|.+.+.|+||+ |+ .|.+++|++.
T Consensus 480 lIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~ 540 (790)
T PRK09200 480 TVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISL 540 (790)
T ss_pred EEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcc
Confidence 9999999999999 7999 999999999999999999 22 2388999987
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.5e-16 Score=186.69 Aligned_cols=139 Identities=14% Similarity=0.125 Sum_probs=105.1
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccE-EEEEEEC-----ChhhHHHHHHHhhc-CCcEEEEecChHHHHHHHHH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLV-KQYLIRT-----PKSQKIVNLLSFLE-GKRSLIFVKTYRDASRIISA 1101 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I-~Q~~~~v-----~~~~Kl~~Ll~lL~-~~k~IIFvnTk~~ad~L~~~ 1101 (1858)
|||+|+.++++++.+...+............+ .|.+..+ .+.+.+..+++.+. ..++||||+|++.|+.+++.
T Consensus 162 SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~ 241 (358)
T TIGR01587 162 SATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQ 241 (358)
T ss_pred ecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHH
Confidence 99999999888877655433222221111112 3333222 22333444444443 48999999999999999999
Q ss_pred HhhCCC--eEEEEecCCCCccHHHHHH----HHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc
Q psy15269 1102 VQDSNM--MTIPMSNNGTSWSHVECLE----LLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1102 L~~~g~--~~~~LHG~ms~~~Q~eR~~----~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI 1173 (1858)
|++.+. .+..+||+++ +.+|.+ ++++|++|+.+||||||+++||+||+ +++||+|+.| +++|+||+
T Consensus 242 L~~~~~~~~~~~~h~~~~---~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~ 313 (358)
T TIGR01587 242 LKENAPEEEIMLLHSRFT---EKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRL 313 (358)
T ss_pred HHhhcCCCeEEEEECCCC---HHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHh
Confidence 998776 5999999999 888876 48999999999999999999999995 8999999888 78999999
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.8e-14 Score=178.15 Aligned_cols=225 Identities=17% Similarity=0.196 Sum_probs=159.7
Q ss_pred cccccccccccccCcc--ccccccccceeecccchhhhhhHHhhhhhhcC--CCchhhHHHHHHHHHhHHHHHHHhhhcc
Q psy15269 930 VRDMRHVSNNILMSPN--YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTA--LSPREKTVLEQIFSVVNKFRAELLSAVS 1005 (1858)
Q Consensus 930 v~~l~~t~~~ll~~~~--~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mG--F~~~~~esL~~Il~~Lpk~RQtLLf~~~ 1005 (1858)
.+.+-..|-++....- ........-+++||| =.+.+-| |.|+ |..+-..++.+-.
T Consensus 108 ~klLyisPErl~~~~f~~~L~~~~i~l~vIDEA----------HCiSqWGhdFRP~--------Y~~lg~l~~~~~~--- 166 (590)
T COG0514 108 LKLLYISPERLMSPRFLELLKRLPISLVAIDEA----------HCISQWGHDFRPD--------YRRLGRLRAGLPN--- 166 (590)
T ss_pred eeEEEECchhhcChHHHHHHHhCCCceEEechH----------HHHhhcCCccCHh--------HHHHHHHHhhCCC---
Confidence 3445555655554211 111233344556665 4488988 9999 7778777777632
Q ss_pred CCCCcccccccccccccccccCCCCCCcHhHHHHHHHhc--CCCEEEEEccCCcccEEEEEEECC-hhhHHHHHHHhhcC
Q psy15269 1006 NAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEV--EDPIMKLVKPSSVHLVKQYLIRTP-KSQKIVNLLSFLEG 1082 (1858)
Q Consensus 1006 ~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L--~dpv~I~v~~~~~~~I~Q~~~~v~-~~~Kl~~Ll~lL~~ 1082 (1858)
.......||-++.+++-+...| ++|. +-+..-..++|.-.+.... ..+++..+......
T Consensus 167 -----------------~p~~AlTATA~~~v~~DI~~~L~l~~~~-~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~~~~~ 228 (590)
T COG0514 167 -----------------PPVLALTATATPRVRDDIREQLGLQDAN-IFRGSFDRPNLALKVVEKGEPSDQLAFLATVLPQ 228 (590)
T ss_pred -----------------CCEEEEeCCCChHHHHHHHHHhcCCCcc-eEEecCCCchhhhhhhhcccHHHHHHHHHhhccc
Confidence 1111236888888887666655 4442 3333344445433332222 34444433321222
Q ss_pred --CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEc
Q psy15269 1083 --KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIY 1160 (1858)
Q Consensus 1083 --~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINy 1160 (1858)
...||||.||+.|+.++++|++.|+++..+||+|+ ..+|..+.++|..+++.|+|||-+...|||.|||.+||||
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~---~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~ 305 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLS---NEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHY 305 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCC---HHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEe
Confidence 56899999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCCChhhhhhhc--cCcc----eEEEEecCcccHHHHHHHHH
Q psy15269 1161 NLPLSINHYVFQI--AGHK----EAIAFYDPVADIGLASSLIK 1197 (1858)
Q Consensus 1161 DlP~~~e~YIHRI--ag~~----~aitfvt~~~e~~~l~~Ie~ 1197 (1858)
|+|.++|+|++-+ ||+. .|+.|+.+ .|....+.+.+
T Consensus 306 ~lP~s~EsYyQE~GRAGRDG~~a~aill~~~-~D~~~~~~~i~ 347 (590)
T COG0514 306 DLPGSIESYYQETGRAGRDGLPAEAILLYSP-EDIRWQRYLIE 347 (590)
T ss_pred cCCCCHHHHHHHHhhccCCCCcceEEEeecc-ccHHHHHHHHH
Confidence 9999999999988 3332 79999999 77666655554
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.4e-14 Score=185.84 Aligned_cols=257 Identities=15% Similarity=0.066 Sum_probs=170.0
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.++-|.|+||.++-..+..+.. .. ++-.++.|+.....+ .-...+++++||.++.. .....
T Consensus 69 kal~i~P~raLa~q~~~~~~~~~~-~g-----------~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~ 133 (737)
T PRK02362 69 KALYIVPLRALASEKFEEFERFEE-LG-----------VRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAP 133 (737)
T ss_pred cEEEEeChHHHHHHHHHHHHHhhc-CC-----------CEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChh
Confidence 367899999999999877664321 11 133456676543221 11235688999987753 22222
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHH---HHHHhhhccCCCCccccccccccccccc
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKF---RAELLSAVSNAPSFDDNNVSMGVTSTQH 1024 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~---RQtLLf~~~~~~s~~~~~~s~~~~~~~~ 1024 (1858)
......-+|+||++. +.+.++.+. ++.++..+... .|.+.+
T Consensus 134 ~l~~v~lvViDE~H~----------l~d~~rg~~----le~il~rl~~~~~~~qii~l---------------------- 177 (737)
T PRK02362 134 WLDDITCVVVDEVHL----------IDSANRGPT----LEVTLAKLRRLNPDLQVVAL---------------------- 177 (737)
T ss_pred hhhhcCEEEEECccc----------cCCCcchHH----HHHHHHHHHhcCCCCcEEEE----------------------
Confidence 234566777888866 777777777 77777666432 233444
Q ss_pred ccCCCCCCcHhHHHHHHHhcC-------CCEEEEE--ccCCccc--EEEEEEECC-hhhHHHHHHHhhc-CCcEEEEecC
Q psy15269 1025 NSTDSLFSWGDIEEESNIEVE-------DPIMKLV--KPSSVHL--VKQYLIRTP-KSQKIVNLLSFLE-GKRSLIFVKT 1091 (1858)
Q Consensus 1025 ~~~eSAT~p~~I~~la~~~L~-------dpv~I~v--~~~~~~~--I~Q~~~~v~-~~~Kl~~Ll~lL~-~~k~IIFvnT 1091 (1858)
|||+|. .+++++..-. .|+.+.. ....... -.+..+..+ +..+...+.+.+. ..++||||+|
T Consensus 178 ----SATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s 252 (737)
T PRK02362 178 ----SATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLEEGGQCLVFVSS 252 (737)
T ss_pred ----cccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHHcCCCeEEEEeC
Confidence 888864 3344432211 1222211 1000000 011122211 2344555666554 4899999999
Q ss_pred hHHHHHHHHHHhhCC------------------------------------CeEEEEecCCCCccHHHHHHHHHHHhcCC
Q psy15269 1092 YRDASRIISAVQDSN------------------------------------MMTIPMSNNGTSWSHVECLELLNLFNTGK 1135 (1858)
Q Consensus 1092 k~~ad~L~~~L~~~g------------------------------------~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~ 1135 (1858)
++.|+.++..|.+.. ..+..+||+|+ +.+|..+.+.||+|+
T Consensus 253 r~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~---~~eR~~ve~~Fr~G~ 329 (737)
T PRK02362 253 RRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLS---REHRELVEDAFRDRL 329 (737)
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCC---HHHHHHHHHHHHcCC
Confidence 999999988886431 35788999999 999999999999999
Q ss_pred CcEEEeccccccCCCCCCcceEEE----cC-----CCCChhhhhhhc--cCc------ceEEEEecC
Q psy15269 1136 SSLVIMTLSDFIGNDFTNVEQVII----YN-----LPLSINHYVFQI--AGH------KEAIAFYDP 1185 (1858)
Q Consensus 1136 ~~ILVATDVAARGLDIp~V~~VIN----yD-----lP~~~e~YIHRI--ag~------~~aitfvt~ 1185 (1858)
++|||||+.+++|+|+|.+.+||+ || .|.+..+|+||+ ||+ |.++.++..
T Consensus 330 i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 330 IKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred CeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 999999999999999999999998 88 789999999999 433 357777765
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.9e-13 Score=169.56 Aligned_cols=115 Identities=11% Similarity=-0.014 Sum_probs=102.0
Q ss_pred ECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEE
Q psy15269 1066 RTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVI 1140 (1858)
Q Consensus 1066 ~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILV 1140 (1858)
+..+.+|...+...+. +.++||||+|+..++.++..|.+.|+++..|||+ |.+|+..+.+|+.+...|+|
T Consensus 384 ~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~-----q~~rEa~ii~~ag~~g~VtI 458 (745)
T TIGR00963 384 YKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK-----NHEREAEIIAQAGRKGAVTI 458 (745)
T ss_pred EcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC-----hHHHHHHHHHhcCCCceEEE
Confidence 4456778877777552 3789999999999999999999999999999997 67999999999999999999
Q ss_pred eccccccCCCCCC-------cceEEEcCCCCChhhhhhhc---cCcc---eEEEEecC
Q psy15269 1141 MTLSDFIGNDFTN-------VEQVIIYNLPLSINHYVFQI---AGHK---EAIAFYDP 1185 (1858)
Q Consensus 1141 ATDVAARGLDIp~-------V~~VINyDlP~~~e~YIHRI---ag~~---~aitfvt~ 1185 (1858)
|||+|+||+||+. .-|||||++|.+...|.||+ |+.| .+..|++.
T Consensus 459 ATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~ 516 (745)
T TIGR00963 459 ATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSL 516 (745)
T ss_pred EeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEec
Confidence 9999999999999 55999999999999999999 3333 78889887
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-13 Score=182.48 Aligned_cols=256 Identities=14% Similarity=0.028 Sum_probs=168.6
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.+|-|+|+||.++=..+..+. ... ++-..+.|+..... +.....++++.||.++.. .....
T Consensus 70 ~~l~l~P~~aLa~q~~~~~~~~~-~~g-----------~~v~~~~Gd~~~~~---~~~~~~~IiV~Tpe~~~~ll~~~~~ 134 (720)
T PRK00254 70 KAVYLVPLKALAEEKYREFKDWE-KLG-----------LRVAMTTGDYDSTD---EWLGKYDIIIATAEKFDSLLRHGSS 134 (720)
T ss_pred eEEEEeChHHHHHHHHHHHHHHh-hcC-----------CEEEEEeCCCCCch---hhhccCCEEEEcHHHHHHHHhCCch
Confidence 35788899999999876655321 111 12344566654322 122346789999988754 22112
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccC
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNST 1027 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~ 1027 (1858)
......-+|+||++. +.+.++.+. ++.|+..+++..|.+.+
T Consensus 135 ~l~~l~lvViDE~H~----------l~~~~rg~~----le~il~~l~~~~qiI~l------------------------- 175 (720)
T PRK00254 135 WIKDVKLVVADEIHL----------IGSYDRGAT----LEMILTHMLGRAQILGL------------------------- 175 (720)
T ss_pred hhhcCCEEEEcCcCc----------cCCccchHH----HHHHHHhcCcCCcEEEE-------------------------
Confidence 234556677888876 766667677 88888888777777777
Q ss_pred CCCCCcHhHHHHHHHhcCCCEEEE-EccCCc--ccEEEEEEECCh--hh-----HHHHHHHhhc-CCcEEEEecChHHHH
Q psy15269 1028 DSLFSWGDIEEESNIEVEDPIMKL-VKPSSV--HLVKQYLIRTPK--SQ-----KIVNLLSFLE-GKRSLIFVKTYRDAS 1096 (1858)
Q Consensus 1028 eSAT~p~~I~~la~~~L~dpv~I~-v~~~~~--~~I~Q~~~~v~~--~~-----Kl~~Ll~lL~-~~k~IIFvnTk~~ad 1096 (1858)
|||++. .+++++ ++..+.... ..+... ..+.+.+...+. .+ ....+.+.++ +.++||||+|++.|+
T Consensus 176 -SATl~n-~~~la~-wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vLVF~~sr~~~~ 252 (720)
T PRK00254 176 -SATVGN-AEELAE-WLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVKKGKGALVFVNTRRSAE 252 (720)
T ss_pred -EccCCC-HHHHHH-HhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHHhCCCEEEEEcChHHHH
Confidence 999875 466665 343322111 000000 001112221111 11 1233444454 378999999999998
Q ss_pred HHHHHHhhC---------------------------------CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc
Q psy15269 1097 RIISAVQDS---------------------------------NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL 1143 (1858)
Q Consensus 1097 ~L~~~L~~~---------------------------------g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD 1143 (1858)
.++..|.+. ...+..+||+|+ +.+|..+.+.|++|.++|||||+
T Consensus 253 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~---~~eR~~ve~~F~~G~i~VLvaT~ 329 (720)
T PRK00254 253 KEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG---RTERVLIEDAFREGLIKVITATP 329 (720)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC---HHHHHHHHHHHHCCCCeEEEeCc
Confidence 887666321 234889999999 99999999999999999999999
Q ss_pred ccccCCCCCCcceEE-------EcCCCCC-hhhhhhhc--cCc------ceEEEEecC
Q psy15269 1144 SDFIGNDFTNVEQVI-------IYNLPLS-INHYVFQI--AGH------KEAIAFYDP 1185 (1858)
Q Consensus 1144 VAARGLDIp~V~~VI-------NyDlP~~-~e~YIHRI--ag~------~~aitfvt~ 1185 (1858)
.+++|+|+|.+++|| +|+.|.. ..+|+||+ ||+ +.++.+++.
T Consensus 330 tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~ 387 (720)
T PRK00254 330 TLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATT 387 (720)
T ss_pred HHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecC
Confidence 999999999999999 4777764 46899999 433 368888775
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.1e-13 Score=176.37 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=117.3
Q ss_pred HHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccc
Q psy15269 1072 KIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDF 1146 (1858)
Q Consensus 1072 Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAA 1146 (1858)
++..|+..|+ +.++||||+|++.++.+++.|.+.|+++..+||+++ +.+|..++++|+.|++.|||||++++
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~---~~~R~~~l~~f~~g~i~vlV~t~~L~ 507 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDID---TLERVEIIRDLRLGEFDVLVGINLLR 507 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCC---HHHHHHHHHHHHcCCceEEEEeCHHh
Confidence 4445555443 378999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cCCCCCCcceEEEcCC-----CCChhhhhhhccC-----cceEEEEecCc--------ccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1147 IGNDFTNVEQVIIYNL-----PLSINHYVFQIAG-----HKEAIAFYDPV--------ADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1147 RGLDIp~V~~VINyDl-----P~~~e~YIHRIag-----~~~aitfvt~~--------~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
||+|+|++++||++|. |.+.++|+||+|+ .|.+++|++.. .|...+++|+..++.+...+|.
T Consensus 508 rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 587 (652)
T PRK05298 508 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPK 587 (652)
T ss_pred CCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 9999999999999995 7899999999932 23789999842 5678888899999998888885
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-13 Score=171.65 Aligned_cols=238 Identities=12% Similarity=0.051 Sum_probs=158.6
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCcccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPNYESD 949 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~~~~~ 949 (1858)
.++++-|+|+|+.|+-..+..+...+.. ....+.||.... ...+++++|+.++..... ...
T Consensus 160 ~vLilvpt~eL~~Q~~~~l~~~~~~~~~-----------~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~-~~~ 220 (501)
T PHA02558 160 KVLIIVPTTSLVTQMIDDFVDYRLFPRE-----------AMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK-EWF 220 (501)
T ss_pred eEEEEECcHHHHHHHHHHHHHhcccccc-----------ceeEEecCcccC-------CCCCEEEeeHHHHhhchh-hhc
Confidence 4689999999999998887665432211 122344554321 234578899988875321 122
Q ss_pred ccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCCC
Q psy15269 950 VNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDS 1029 (1858)
Q Consensus 950 ~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eS 1029 (1858)
.....+|+||+.+ +. .++ +..|++.+++.|+++.+ |
T Consensus 221 ~~~~~iIvDEaH~----------~~----~~~----~~~il~~~~~~~~~lGL--------------------------T 256 (501)
T PHA02558 221 DQFGMVIVDECHL----------FT----GKS----LTSIITKLDNCKFKFGL--------------------------T 256 (501)
T ss_pred cccCEEEEEchhc----------cc----chh----HHHHHHhhhccceEEEE--------------------------e
Confidence 3456677999987 22 234 88888888888888888 6
Q ss_pred CCCcHhHH-------------------HHHHH-hcCCCEEEEEccC--C--cccE-----EEEE-EECChhhHHHHHHHh
Q psy15269 1030 LFSWGDIE-------------------EESNI-EVEDPIMKLVKPS--S--VHLV-----KQYL-IRTPKSQKIVNLLSF 1079 (1858)
Q Consensus 1030 AT~p~~I~-------------------~la~~-~L~dpv~I~v~~~--~--~~~I-----~Q~~-~~v~~~~Kl~~Ll~l 1079 (1858)
||+++... ++.+. ++.++....+... . ...+ .+.+ ..+....|...+.++
T Consensus 257 ATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~ 336 (501)
T PHA02558 257 GSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANL 336 (501)
T ss_pred ccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHH
Confidence 66653221 11111 1112211111100 0 0000 0000 011122222222222
Q ss_pred ---hc--CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEec-cccccCCCCCC
Q psy15269 1080 ---LE--GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMT-LSDFIGNDFTN 1153 (1858)
Q Consensus 1080 ---L~--~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVAT-DVAARGLDIp~ 1153 (1858)
+. +.+++|||+..+.++.|++.|++.|+++..+||+++ +.+|.++++.|++|+..||||| ++++||+|+|+
T Consensus 337 ~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~---~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ 413 (501)
T PHA02558 337 ALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVD---TEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKN 413 (501)
T ss_pred HHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCC---HHHHHHHHHHHhCCCCeEEEEEcceecccccccc
Confidence 22 367888888888999999999999999999999999 9999999999999999999999 99999999999
Q ss_pred cceEEEcCCCCChhhhhhhc
Q psy15269 1154 VEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1154 V~~VINyDlP~~~e~YIHRI 1173 (1858)
+++||++++|.+...|+||+
T Consensus 414 ld~vIl~~p~~s~~~~~Qri 433 (501)
T PHA02558 414 LHHVIFAHPSKSKIIVLQSI 433 (501)
T ss_pred ccEEEEecCCcchhhhhhhh
Confidence 99999999999999999999
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.1e-13 Score=163.31 Aligned_cols=136 Identities=13% Similarity=0.070 Sum_probs=99.9
Q ss_pred CCCCcHhHHHHHHHh--cCCCEEEEEcc-----------CCc---------ccEEEEEEECChhhH---HHHHHHhh---
Q psy15269 1029 SLFSWGDIEEESNIE--VEDPIMKLVKP-----------SSV---------HLVKQYLIRTPKSQK---IVNLLSFL--- 1080 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~--L~dpv~I~v~~-----------~~~---------~~I~Q~~~~v~~~~K---l~~Ll~lL--- 1080 (1858)
|||+|+.+.+..+.. +.+|+.+.-+. ... ..+++.+.. ....| +..+.+.+
T Consensus 188 SAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~ 266 (357)
T TIGR03158 188 SATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIER 266 (357)
T ss_pred ecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHH
Confidence 999999877776654 55554332221 010 246666655 32222 22333333
Q ss_pred ----cCCcEEEEecChHHHHHHHHHHhhCC--CeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCc
Q psy15269 1081 ----EGKRSLIFVKTYRDASRIISAVQDSN--MMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNV 1154 (1858)
Q Consensus 1081 ----~~~k~IIFvnTk~~ad~L~~~L~~~g--~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V 1154 (1858)
...++||||||++.++.+++.|++.+ +.+..+||.++ |.+|.++ ++.+||||||+++|||||+.+
T Consensus 267 ~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~---~~~R~~~------~~~~iLVaTdv~~rGiDi~~~ 337 (357)
T TIGR03158 267 FRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAP---KKDRERA------MQFDILLGTSTVDVGVDFKRD 337 (357)
T ss_pred HhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCC---HHHHHHh------ccCCEEEEecHHhcccCCCCc
Confidence 23689999999999999999999864 67899999999 9888654 478999999999999999987
Q ss_pred ceEEEcCCCCChhhhhhhccCcc
Q psy15269 1155 EQVIIYNLPLSINHYVFQIAGHK 1177 (1858)
Q Consensus 1155 ~~VINyDlP~~~e~YIHRIag~~ 1177 (1858)
+|| ++ |.+.++|+||+|+.|
T Consensus 338 -~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 338 -WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -eEE-EC-CCCHHHHhhhcccCC
Confidence 666 66 999999999997754
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=170.05 Aligned_cols=125 Identities=15% Similarity=0.169 Sum_probs=107.1
Q ss_pred hhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccc
Q psy15269 1070 SQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLS 1144 (1858)
Q Consensus 1070 ~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDV 1144 (1858)
..++..|+..++ +.++||||+|++.++.+++.|.+.|+++..+||+++ +.+|.+++++|+.|++.|||||++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~---~~eR~~~l~~fr~G~i~VLV~t~~ 501 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEID---TLERVEIIRDLRLGEFDVLVGINL 501 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCC---HHHHHHHHHHHhcCCceEEEEcCh
Confidence 345555555543 378999999999999999999999999999999999 999999999999999999999999
Q ss_pred cccCCCCCCcceEEEcC-----CCCChhhhhhhccC-----cceEEEEecCcccHHHHHHHHHH
Q psy15269 1145 DFIGNDFTNVEQVIIYN-----LPLSINHYVFQIAG-----HKEAIAFYDPVADIGLASSLIKL 1198 (1858)
Q Consensus 1145 AARGLDIp~V~~VINyD-----lP~~~e~YIHRIag-----~~~aitfvt~~~e~~~l~~Ie~~ 1198 (1858)
++||+|+|+|++||++| .|.+.++||||+|+ .|.++.|++. .+..+.+.|...
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~-~~~~~~~ai~~~ 564 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADK-ITDSMQKAIEET 564 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcC-CCHHHHHHHHHH
Confidence 99999999999999999 89999999999922 2378999886 555555555544
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.7e-13 Score=179.39 Aligned_cols=211 Identities=12% Similarity=0.016 Sum_probs=147.1
Q ss_pred hhhcccccccccccccCcc-ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhcc
Q psy15269 927 DKFVRDMRHVSNNILMSPN-YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVS 1005 (1858)
Q Consensus 927 ~~~v~~l~~t~~~ll~~~~-~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~ 1005 (1858)
++..++...|+|+++.... -........+|+|||++ ++++++|.-. .+++|+..-+ ..+.+++
T Consensus 154 s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHE---------RsL~~D~LL~---lLk~il~~rp-dLKlIlm--- 217 (1283)
T TIGR01967 154 SSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHE---------RSLNIDFLLG---YLKQLLPRRP-DLKIIIT--- 217 (1283)
T ss_pred CCCceeeeccccHHHHHhhhCcccccCcEEEEcCcch---------hhccchhHHH---HHHHHHhhCC-CCeEEEE---
Confidence 3456688999999995211 12345566778999984 2666665433 1333333222 2344556
Q ss_pred CCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECCh------hhHHHHHHHh
Q psy15269 1006 NAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPK------SQKIVNLLSF 1079 (1858)
Q Consensus 1006 ~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~------~~Kl~~Ll~l 1079 (1858)
|||++. +++++.|.+.|+ |.+.... ..++.+|..... .++...++..
T Consensus 218 -----------------------SATld~--~~fa~~F~~apv-I~V~Gr~-~PVev~Y~~~~~~~~~~~~~~~~~i~~~ 270 (1283)
T TIGR01967 218 -----------------------SATIDP--ERFSRHFNNAPI-IEVSGRT-YPVEVRYRPLVEEQEDDDLDQLEAILDA 270 (1283)
T ss_pred -----------------------eCCcCH--HHHHHHhcCCCE-EEECCCc-ccceeEEecccccccchhhhHHHHHHHH
Confidence 999974 678888777775 5554322 235556654432 2344444443
Q ss_pred h----c--CCcEEEEecChHHHHHHHHHHhhCC---CeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCC
Q psy15269 1080 L----E--GKRSLIFVKTYRDASRIISAVQDSN---MMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGND 1150 (1858)
Q Consensus 1080 L----~--~~k~IIFvnTk~~ad~L~~~L~~~g---~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLD 1150 (1858)
+ . .+++|||+++++.++.+++.|++.+ +.+..+||+|+ +++|.++++.+ +..+|+||||+|++|||
T Consensus 271 I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls---~~eQ~~vf~~~--~~rkIVLATNIAEtSLT 345 (1283)
T TIGR01967 271 VDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLS---NKEQQRVFQPH--SGRRIVLATNVAETSLT 345 (1283)
T ss_pred HHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCC---HHHHHHHhCCC--CCceEEEeccHHHhccc
Confidence 3 2 2789999999999999999999764 45889999999 99999986654 24689999999999999
Q ss_pred CCCcceEEEcCCCC------------------Chhhhhhhc--cC---cceEEEEecC
Q psy15269 1151 FTNVEQVIIYNLPL------------------SINHYVFQI--AG---HKEAIAFYDP 1185 (1858)
Q Consensus 1151 Ip~V~~VINyDlP~------------------~~e~YIHRI--ag---~~~aitfvt~ 1185 (1858)
||+|++|||+++|. +-.+|+||. +| .|.++.|++.
T Consensus 346 IpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte 403 (1283)
T TIGR01967 346 VPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSE 403 (1283)
T ss_pred cCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCH
Confidence 99999999999664 236999999 22 3389999986
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=159.64 Aligned_cols=116 Identities=10% Similarity=0.047 Sum_probs=102.0
Q ss_pred EEECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcE
Q psy15269 1064 LIRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSL 1138 (1858)
Q Consensus 1064 ~~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~I 1138 (1858)
.+++...+|...+++.+. ..++||||+|++.++.+++.|.+.|+++..|||++. |++|..+..+|+.| .|
T Consensus 401 ~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~---~~E~~ii~~ag~~g--~V 475 (762)
T TIGR03714 401 KIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNA---AKEAQIIAEAGQKG--AV 475 (762)
T ss_pred eEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCCh---HHHHHHHHHcCCCC--eE
Confidence 456678889888887663 378999999999999999999999999999999998 99998888777776 79
Q ss_pred EEeccccccCCCCC---------CcceEEEcCCCCChhhhhhhc---cCc---ceEEEEecC
Q psy15269 1139 VIMTLSDFIGNDFT---------NVEQVIIYNLPLSINHYVFQI---AGH---KEAIAFYDP 1185 (1858)
Q Consensus 1139 LVATDVAARGLDIp---------~V~~VINyDlP~~~e~YIHRI---ag~---~~aitfvt~ 1185 (1858)
+||||+|+||+||+ ++.+||||++|....+ +||+ |+. |.+++|++.
T Consensus 476 lIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~ 536 (762)
T TIGR03714 476 TVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSL 536 (762)
T ss_pred EEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEcc
Confidence 99999999999999 9999999999999877 9999 322 388999987
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.5e-12 Score=167.04 Aligned_cols=266 Identities=14% Similarity=0.066 Sum_probs=161.7
Q ss_pred ceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccccc
Q psy15269 871 LWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYES 948 (1858)
Q Consensus 871 ~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~~ 948 (1858)
+.++-|.|+||.++-+.+..+. .... +-....|+...... .-+..++++.||.++.. ......
T Consensus 68 ~v~i~P~raLa~q~~~~~~~l~-~~g~-----------~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~ 132 (674)
T PRK01172 68 SIYIVPLRSLAMEKYEELSRLR-SLGM-----------RVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYI 132 (674)
T ss_pred EEEEechHHHHHHHHHHHHHHh-hcCC-----------eEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhH
Confidence 4567799999999877765431 1111 22334565543222 22456788999987653 221222
Q ss_pred cccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHH---HHHHhhhccCCCCcccccccccccccccc
Q psy15269 949 DVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKF---RAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 949 ~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~---RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
.....-+|+||+++ +.+.++.+. ++.++..+... .|.+.+
T Consensus 133 l~~v~lvViDEaH~----------l~d~~rg~~----le~ll~~~~~~~~~~riI~l----------------------- 175 (674)
T PRK01172 133 INDVGLIVADEIHI----------IGDEDRGPT----LETVLSSARYVNPDARILAL----------------------- 175 (674)
T ss_pred HhhcCEEEEecchh----------ccCCCccHH----HHHHHHHHHhcCcCCcEEEE-----------------------
Confidence 34556677888877 777677777 77776655432 233444
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEE-------EEEEECChhh--HHHH-HHHhhc-CCcEEEEecChHH
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVK-------QYLIRTPKSQ--KIVN-LLSFLE-GKRSLIFVKTYRD 1094 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~-------Q~~~~v~~~~--Kl~~-Ll~lL~-~~k~IIFvnTk~~ 1094 (1858)
|||++. .+++++. +..+... .... ...++ +.+....... .+.. +.+.+. .+++||||+|++.
T Consensus 176 ---SATl~n-~~~la~w-l~~~~~~-~~~r-~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~ 248 (674)
T PRK01172 176 ---SATVSN-ANELAQW-LNASLIK-SNFR-PVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKN 248 (674)
T ss_pred ---eCccCC-HHHHHHH-hCCCccC-CCCC-CCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHH
Confidence 888864 4566653 3211110 0000 00111 1111111111 1222 222233 4789999999999
Q ss_pred HHHHHHHHhhC-----C--------------------CeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCC
Q psy15269 1095 ASRIISAVQDS-----N--------------------MMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGN 1149 (1858)
Q Consensus 1095 ad~L~~~L~~~-----g--------------------~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGL 1149 (1858)
++.++..|.+. . ..+..+||+|+ +++|..+.+.|++|.++|||||+++++|+
T Consensus 249 ~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~---~~eR~~ve~~f~~g~i~VLvaT~~la~Gv 325 (674)
T PRK01172 249 AEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLS---NEQRRFIEEMFRNRYIKVIVATPTLAAGV 325 (674)
T ss_pred HHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCC---HHHHHHHHHHHHcCCCeEEEecchhhccC
Confidence 99999988653 1 23677899999 99999999999999999999999999999
Q ss_pred CCCCcceEEEcCCC---------CChhhhhhhc--cCc------ceEEEEecCcccHHHHHHHHHHHhhc
Q psy15269 1150 DFTNVEQVIIYNLP---------LSINHYVFQI--AGH------KEAIAFYDPVADIGLASSLIKLLEYS 1202 (1858)
Q Consensus 1150 DIp~V~~VINyDlP---------~~~e~YIHRI--ag~------~~aitfvt~~~e~~~l~~Ie~~l~~~ 1202 (1858)
|+|+. .||.+|.| .++.+|.||+ ||+ +.++.++...++. ..+++++...
T Consensus 326 nipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~---~~~~~~l~~~ 391 (674)
T PRK01172 326 NLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASY---DAAKKYLSGE 391 (674)
T ss_pred CCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccH---HHHHHHHcCC
Confidence 99986 56666654 4667899999 332 1356665442222 3355555443
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-11 Score=163.68 Aligned_cols=100 Identities=17% Similarity=0.277 Sum_probs=92.3
Q ss_pred CcEEEEecChHHHHHHHHHHhhCCCeEEEEecC--------CCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCc
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNN--------GTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNV 1154 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~--------ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V 1154 (1858)
.++||||++++.|+.|++.|...|+++..+||. |+ |.+|.+++++|++|+.++|||||++++|+|+|++
T Consensus 366 ~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~---~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~ 442 (773)
T PRK13766 366 SRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMS---QKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSV 442 (773)
T ss_pred CeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCC---HHHHHHHHHHHHcCCCCEEEECChhhcCCCcccC
Confidence 899999999999999999999999999999997 76 9999999999999999999999999999999999
Q ss_pred ceEEEcCCCCChhhhhhhc---cC--cceEEEEecC
Q psy15269 1155 EQVIIYNLPLSINHYVFQI---AG--HKEAIAFYDP 1185 (1858)
Q Consensus 1155 ~~VINyDlP~~~e~YIHRI---ag--~~~aitfvt~ 1185 (1858)
++|||||+|.++..|+||+ ++ .+.++.++..
T Consensus 443 ~~VI~yd~~~s~~r~iQR~GR~gR~~~~~v~~l~~~ 478 (773)
T PRK13766 443 DLVIFYEPVPSEIRSIQRKGRTGRQEEGRVVVLIAK 478 (773)
T ss_pred CEEEEeCCCCCHHHHHHHhcccCcCCCCEEEEEEeC
Confidence 9999999999999999999 22 2367777764
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.2e-11 Score=146.44 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=98.3
Q ss_pred EEEECChhhHHHHHHH-hhc---CCcEEEEecChHHHHHHHHHHhhCCCeEE-EEec--------CCCCccHHHHHHHHH
Q psy15269 1063 YLIRTPKSQKIVNLLS-FLE---GKRSLIFVKTYRDASRIISAVQDSNMMTI-PMSN--------NGTSWSHVECLELLN 1129 (1858)
Q Consensus 1063 ~~~~v~~~~Kl~~Ll~-lL~---~~k~IIFvnTk~~ad~L~~~L~~~g~~~~-~LHG--------~ms~~~Q~eR~~~L~ 1129 (1858)
..+.-||.+++..++. .++ +.|+|||++.+.+++.+...|.+.|..+. .+-| +|+ |.++.++++
T Consensus 343 ~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMs---QkeQ~eiI~ 419 (542)
T COG1111 343 SGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMS---QKEQKEIID 419 (542)
T ss_pred ccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccC---HHHHHHHHH
Confidence 3334455555555443 232 27999999999999999999999988875 5544 355 999999999
Q ss_pred HHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccCc-----ceEEEEecC
Q psy15269 1130 LFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAGH-----KEAIAFYDP 1185 (1858)
Q Consensus 1130 ~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag~-----~~aitfvt~ 1185 (1858)
+||+|+++|||||.|+..|||||+|++||-||.-.++.-+|||.|++ |..+.+++.
T Consensus 420 ~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~r~Grv~vLvt~ 480 (542)
T COG1111 420 QFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRKRKGRVVVLVTE 480 (542)
T ss_pred HHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccCCCCeEEEEEec
Confidence 99999999999999999999999999999999999999999999332 267777776
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-11 Score=116.22 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=70.0
Q ss_pred HHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccC
Q psy15269 1100 SAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAG 1175 (1858)
Q Consensus 1100 ~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag 1175 (1858)
++|++.|+++..+||+++ +.+|..++++|++++..|||||+++++|+|+|++++||+||+|+++..|+||+++
T Consensus 1 ~~L~~~~~~~~~i~~~~~---~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR 73 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMS---QKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGR 73 (78)
T ss_dssp HHHHHTTSSEEEESTTSH---HHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTT
T ss_pred CChHHCCCcEEEEECCCC---HHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhc
Confidence 368889999999999999 9999999999999999999999999999999999999999999999999999854
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-10 Score=148.39 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=103.1
Q ss_pred EEECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcE
Q psy15269 1064 LIRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSL 1138 (1858)
Q Consensus 1064 ~~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~I 1138 (1858)
.++..+.+|...+.+.+. +.++||||+|+..++.++..|.+.|+++..|||++. ++++..+.+.|+.|. |
T Consensus 417 ~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~---~~Ea~ii~~ag~~g~--V 491 (796)
T PRK12906 417 LLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNH---AKEAEIIMNAGQRGA--V 491 (796)
T ss_pred eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcH---HHHHHHHHhcCCCce--E
Confidence 345677888888888773 378999999999999999999999999999999997 888888888888776 9
Q ss_pred EEeccccccCCCC---CCcc-----eEEEcCCCCChhhhhhhc---cCcc---eEEEEecCc
Q psy15269 1139 VIMTLSDFIGNDF---TNVE-----QVIIYNLPLSINHYVFQI---AGHK---EAIAFYDPV 1186 (1858)
Q Consensus 1139 LVATDVAARGLDI---p~V~-----~VINyDlP~~~e~YIHRI---ag~~---~aitfvt~~ 1186 (1858)
+||||+|+||+|| ++|. ||||+++|.+...|.||+ |+.| .+..|++..
T Consensus 492 tIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 492 TIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred EEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 9999999999999 5999 999999999999999998 3333 788888873
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-10 Score=148.76 Aligned_cols=134 Identities=11% Similarity=0.066 Sum_probs=110.0
Q ss_pred EEECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcE
Q psy15269 1064 LIRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSL 1138 (1858)
Q Consensus 1064 ~~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~I 1138 (1858)
.++....+|...++..+. +.++||||+|++.++.|++.|++.|+++..||+ . |.+|+..+.+|+.+...|
T Consensus 575 ~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--k---q~~REa~Iia~AG~~g~V 649 (1025)
T PRK12900 575 LVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--K---QHDREAEIVAEAGQKGAV 649 (1025)
T ss_pred eEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--C---HHHhHHHHHHhcCCCCeE
Confidence 345677889999988773 378999999999999999999999999999997 4 899999999999999999
Q ss_pred EEeccccccCCCCC---Ccc-----eEEEcCCCCChhhhhhhc---cCcc---eEEEEecCcccHH-HH--HHHHHHHhh
Q psy15269 1139 VIMTLSDFIGNDFT---NVE-----QVIIYNLPLSINHYVFQI---AGHK---EAIAFYDPVADIG-LA--SSLIKLLEY 1201 (1858)
Q Consensus 1139 LVATDVAARGLDIp---~V~-----~VINyDlP~~~e~YIHRI---ag~~---~aitfvt~~~e~~-~l--~~Ie~~l~~ 1201 (1858)
+||||+|+||+||+ +|. |||+++.|.+...|+||+ |+.| .+++|++..++.. .+ ..|.+++..
T Consensus 650 tIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~~~~i~~~~~~ 729 (1025)
T PRK12900 650 TIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRVISVMDR 729 (1025)
T ss_pred EEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhCcHHHHHHHHH
Confidence 99999999999999 564 449999999999999999 3333 8999998733321 11 145555554
Q ss_pred c
Q psy15269 1202 S 1202 (1858)
Q Consensus 1202 ~ 1202 (1858)
.
T Consensus 730 ~ 730 (1025)
T PRK12900 730 L 730 (1025)
T ss_pred c
Confidence 3
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-10 Score=118.06 Aligned_cols=111 Identities=27% Similarity=0.445 Sum_probs=97.9
Q ss_pred EEEEEEECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC
Q psy15269 1060 VKQYLIRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG 1134 (1858)
Q Consensus 1060 I~Q~~~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G 1134 (1858)
|.+.+...+ ..|...+..++. ..++||||++++.++.+.+.|++.+..+..+||+++ ..+|..++++|+++
T Consensus 2 i~~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~f~~~ 77 (131)
T cd00079 2 IKQYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGS---QEEREEVLKDFREG 77 (131)
T ss_pred cEEEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCC---HHHHHHHHHHHHcC
Confidence 455565554 255555555554 378999999999999999999999999999999999 99999999999999
Q ss_pred CCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhcc
Q psy15269 1135 KSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIA 1174 (1858)
Q Consensus 1135 ~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIa 1174 (1858)
...||++|.++++|+|+|++++||.++.|++..+|+|++|
T Consensus 78 ~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~G 117 (131)
T cd00079 78 EIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIG 117 (131)
T ss_pred CCcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheeccc
Confidence 9999999999999999999999999999999999999983
|
|
| >KOG0354|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.1e-10 Score=144.91 Aligned_cols=119 Identities=19% Similarity=0.260 Sum_probs=96.4
Q ss_pred hhHHHHHHHhhc-------CCcEEEEecChHHHHHHHHHHhh---CCCeEEEEecCC-----CCccHHHHHHHHHHHhcC
Q psy15269 1070 SQKIVNLLSFLE-------GKRSLIFVKTYRDASRIISAVQD---SNMMTIPMSNNG-----TSWSHVECLELLNLFNTG 1134 (1858)
Q Consensus 1070 ~~Kl~~Ll~lL~-------~~k~IIFvnTk~~ad~L~~~L~~---~g~~~~~LHG~m-----s~~~Q~eR~~~L~~Fr~G 1134 (1858)
..|+..|.+++. ..|+||||+||..|+.|..+|.+ .|+.+..+-|.- .+|+|.++.+++++||+|
T Consensus 394 npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G 473 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG 473 (746)
T ss_pred ChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC
Confidence 456666666553 27999999999999999999983 466777776631 124499999999999999
Q ss_pred CCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhcc--Cc--ceEEEEecCcccH
Q psy15269 1135 KSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIA--GH--KEAIAFYDPVADI 1189 (1858)
Q Consensus 1135 ~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIa--g~--~~aitfvt~~~e~ 1189 (1858)
+++|||||.||..||||++|++||-||.-.++...|+|.| ++ +..+.+.+. .+.
T Consensus 474 ~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGRgRa~ns~~vll~t~-~~~ 531 (746)
T KOG0354|consen 474 EINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGRGRARNSKCVLLTTG-SEV 531 (746)
T ss_pred CccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhccccccCCeEEEEEcc-hhH
Confidence 9999999999999999999999999999999999999993 32 266666663 443
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.7e-09 Score=138.07 Aligned_cols=282 Identities=17% Similarity=0.099 Sum_probs=184.8
Q ss_pred cccccCccHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccc
Q psy15269 833 IHRSMYPTLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSL 912 (1858)
Q Consensus 833 ~~~~~~~~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~ 912 (1858)
|...-+ .+.-|+|+|+.|-+.. ..-+++...+.-|.|=|+|+-=|=+.+..++..+-+.. .+
T Consensus 45 PTGsGK-TeAAfLpil~~l~~~~------~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v-----------~v 106 (814)
T COG1201 45 PTGSGK-TEAAFLPVINELLSLG------KGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEV-----------AV 106 (814)
T ss_pred CCCCCh-HHHHHHHHHHHHHhcc------CCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCcc-----------ce
Confidence 444444 3344555555554442 11125667778888889998888888888777444422 33
Q ss_pred cccccCCchhhhhhhhhccccccccccccc---C-ccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHH
Q psy15269 913 LSAGLEPSTAIIDIDKFVRDMRHVSNNILM---S-PNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQ 988 (1858)
Q Consensus 913 ~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~---~-~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~ 988 (1858)
-.|=+.-...++++.+=.++++-||-.+-- + +-......+..+++||+-. +. ...+|-+-. =+|+.
T Consensus 107 RhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHe----l~----~sKRG~~Ls--l~LeR 176 (814)
T COG1201 107 RHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHA----LA----ESKRGVQLA--LSLER 176 (814)
T ss_pred ecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhh----hh----ccccchhhh--hhHHH
Confidence 344455444555555567789999987762 2 3345566788899999966 21 122443322 12332
Q ss_pred HHHHhHHHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCC--CEEEE-EccCCcccEEEEEE
Q psy15269 989 IFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVED--PIMKL-VKPSSVHLVKQYLI 1065 (1858)
Q Consensus 989 Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~d--pv~I~-v~~~~~~~I~Q~~~ 1065 (1858)
.-+..+ .=|++=- |||.- +..++++....+ +..|. +..... .+..++
T Consensus 177 L~~l~~-~~qRIGL--------------------------SATV~-~~~~varfL~g~~~~~~Iv~~~~~k~--~~i~v~ 226 (814)
T COG1201 177 LRELAG-DFQRIGL--------------------------SATVG-PPEEVAKFLVGFGDPCEIVDVSAAKK--LEIKVI 226 (814)
T ss_pred HHhhCc-ccEEEee--------------------------hhccC-CHHHHHHHhcCCCCceEEEEcccCCc--ceEEEE
Confidence 222222 1122211 66654 334444444332 55543 322222 222222
Q ss_pred EC---------ChhhHHHHHHHhhcC-CcEEEEecChHHHHHHHHHHhhCC-CeEEEEecCCCCccHHHHHHHHHHHhcC
Q psy15269 1066 RT---------PKSQKIVNLLSFLEG-KRSLIFVKTYRDASRIISAVQDSN-MMTIPMSNNGTSWSHVECLELLNLFNTG 1134 (1858)
Q Consensus 1066 ~v---------~~~~Kl~~Ll~lL~~-~k~IIFvnTk~~ad~L~~~L~~~g-~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G 1134 (1858)
.. ........+.++++. ..++||+||+..++.++..|++.+ ..+..-||.++ .++|..+-++||+|
T Consensus 227 ~p~~~~~~~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlS---re~R~~vE~~lk~G 303 (814)
T COG1201 227 SPVEDLIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLS---RELRLEVEERLKEG 303 (814)
T ss_pred ecCCccccccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeeccccc---HHHHHHHHHHHhcC
Confidence 11 112345666667765 679999999999999999999976 88999999999 99999999999999
Q ss_pred CCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccC
Q psy15269 1135 KSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAG 1175 (1858)
Q Consensus 1135 ~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag 1175 (1858)
+.+++|||.-..-|||+.+|++||||.-|......+||||+
T Consensus 304 ~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGR 344 (814)
T COG1201 304 ELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGR 344 (814)
T ss_pred CceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccc
Confidence 99999999999999999999999999999999999999933
|
|
| >KOG0351|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.5e-10 Score=145.97 Aligned_cols=195 Identities=15% Similarity=0.166 Sum_probs=140.6
Q ss_pred HHhhhhhhcC--CCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHH--h
Q psy15269 968 VYSYLIQQTA--LSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNI--E 1043 (1858)
Q Consensus 968 ~~A~lL~~mG--F~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~--~ 1043 (1858)
|+|--..+=| |.|+ |+.+...|++..- .+. .. -.||-+..|++-+-. .
T Consensus 392 DEAHCVSqWgHdFRp~--------Yk~l~~l~~~~~~----------------vP~--iA--LTATAT~~v~~DIi~~L~ 443 (941)
T KOG0351|consen 392 DEAHCVSQWGHDFRPS--------YKRLGLLRIRFPG----------------VPF--IA--LTATATERVREDVIRSLG 443 (941)
T ss_pred cHHHHhhhhcccccHH--------HHHHHHHHhhCCC----------------CCe--EE--eehhccHHHHHHHHHHhC
Confidence 4445567766 6666 8888877776532 111 11 145655666654333 3
Q ss_pred cCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhcC----CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCc
Q psy15269 1044 VEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEG----KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSW 1119 (1858)
Q Consensus 1044 L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~----~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~ 1119 (1858)
+.+|.... ..-..+++...+..-...+....++..++. ..+||+|.+|+.|+.++..|+..|+.+..+|++|+
T Consensus 444 l~~~~~~~-~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~-- 520 (941)
T KOG0351|consen 444 LRNPELFK-SSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLP-- 520 (941)
T ss_pred CCCcceec-ccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCC--
Confidence 56776332 223444554444332212333344444432 78999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc--cCc-c---eEEEEecCcccHHHHH
Q psy15269 1120 SHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI--AGH-K---EAIAFYDPVADIGLAS 1193 (1858)
Q Consensus 1120 ~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI--ag~-~---~aitfvt~~~e~~~l~ 1193 (1858)
..+|..+.++|-.++++|.|||=+...|||.+||..||||.+|.+.|.|.+-+ ||+ | .++.|+.. .|...++
T Consensus 521 -~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~-~D~~~l~ 598 (941)
T KOG0351|consen 521 -PKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGY-ADISELR 598 (941)
T ss_pred -HHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecch-hHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988 333 2 78999998 5554444
Q ss_pred HH
Q psy15269 1194 SL 1195 (1858)
Q Consensus 1194 ~I 1195 (1858)
.+
T Consensus 599 ~l 600 (941)
T KOG0351|consen 599 RL 600 (941)
T ss_pred HH
Confidence 33
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-09 Score=140.68 Aligned_cols=125 Identities=10% Similarity=0.119 Sum_probs=98.4
Q ss_pred hhhHHHHHHHhh-----cCCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC-CCcEEEec
Q psy15269 1069 KSQKIVNLLSFL-----EGKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG-KSSLVIMT 1142 (1858)
Q Consensus 1069 ~~~Kl~~Ll~lL-----~~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G-~~~ILVAT 1142 (1858)
...|+..+..++ ...++||||++.+.++.+++.|. +..|||+++ +.+|.+++++|++| ++++||+|
T Consensus 478 np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts---~~ER~~il~~Fr~~~~i~vLv~S 549 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTS---QQERMQILQNFQHNPKVNTIFLS 549 (732)
T ss_pred ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCC---HHHHHHHHHHHHhCCCccEEEEe
Confidence 345666544444 23799999999999999999873 456999999 99999999999975 88999999
Q ss_pred cccccCCCCCCcceEEEcCCCC-Chhhhhhhc-----cCcc-eE-------EEEecCc-ccHHHHHHHHHHHhh
Q psy15269 1143 LSDFIGNDFTNVEQVIIYNLPL-SINHYVFQI-----AGHK-EA-------IAFYDPV-ADIGLASSLIKLLEY 1201 (1858)
Q Consensus 1143 DVAARGLDIp~V~~VINyDlP~-~~e~YIHRI-----ag~~-~a-------itfvt~~-~e~~~l~~Ie~~l~~ 1201 (1858)
+|+.+|||+|++++||+++.|. +...|+||+ .+.+ .+ ++|++++ .|..+..+=++++-.
T Consensus 550 kVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~ 623 (732)
T TIGR00603 550 KVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVD 623 (732)
T ss_pred cccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999984 999999998 1111 33 8899873 344555555555544
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.7e-09 Score=140.36 Aligned_cols=245 Identities=15% Similarity=0.107 Sum_probs=150.7
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhh----hcccccccccccccCcc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDK----FVRDMRHVSNNILMSPN 945 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~----~v~~l~~t~~~ll~~~~ 945 (1858)
.++++-||++|+.|+-..+...+ | . +..++.||+....+...+.+ ..++++.|++.+...
T Consensus 192 ~vLvLvPt~~L~~Q~~~~l~~~f-g--~-----------~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p-- 255 (679)
T PRK05580 192 QALVLVPEIALTPQMLARFRARF-G--A-----------PVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFLP-- 255 (679)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHh-C--C-----------CEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhccc--
Confidence 35899999999999988775432 1 1 34566778775555444433 267889998776532
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHH--HHHhHHHHHHHhhhccCCCCcccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQI--FSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQ 1023 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~I--l~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~ 1023 (1858)
..+..-+|+||++. +.+. .+.+..-. .++| ++......+.+++
T Consensus 256 ---~~~l~liVvDEeh~----~s~~---~~~~p~y~----~r~va~~ra~~~~~~~il~--------------------- 300 (679)
T PRK05580 256 ---FKNLGLIIVDEEHD----SSYK---QQEGPRYH----ARDLAVVRAKLENIPVVLG--------------------- 300 (679)
T ss_pred ---ccCCCEEEEECCCc----cccc---cCcCCCCc----HHHHHHHHhhccCCCEEEE---------------------
Confidence 23345678999866 2110 01121111 1222 2222233345566
Q ss_pred cccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc--ccEEEEEEECCh-----------hhHHHHHHHhhcC-CcEEEEe
Q psy15269 1024 HNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV--HLVKQYLIRTPK-----------SQKIVNLLSFLEG-KRSLIFV 1089 (1858)
Q Consensus 1024 ~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~--~~I~Q~~~~v~~-----------~~Kl~~Ll~lL~~-~k~IIFv 1089 (1858)
|||++.+....++.. ....+.+..... ....-.++...+ ..-+..+.+.++. +++|||+
T Consensus 301 -----SATps~~s~~~~~~g--~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~ 373 (679)
T PRK05580 301 -----SATPSLESLANAQQG--RYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFL 373 (679)
T ss_pred -----cCCCCHHHHHHHhcc--ceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEE
Confidence 999886666555321 222222222110 001111111111 1112233333433 6899998
Q ss_pred cCh------------------------------------------------------------HHHHHHHHHHhhC--CC
Q psy15269 1090 KTY------------------------------------------------------------RDASRIISAVQDS--NM 1107 (1858)
Q Consensus 1090 nTk------------------------------------------------------------~~ad~L~~~L~~~--g~ 1107 (1858)
|++ ..++.+++.|++. +.
T Consensus 374 nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~ 453 (679)
T PRK05580 374 NRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEA 453 (679)
T ss_pred cCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCC
Confidence 862 2467888888885 88
Q ss_pred eEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceE--EEcCCCCCh----------hhhhhhc
Q psy15269 1108 MTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQV--IIYNLPLSI----------NHYVFQI 1173 (1858)
Q Consensus 1108 ~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~V--INyDlP~~~----------e~YIHRI 1173 (1858)
++..+|+++. ..+.+|++++++|++|+++|||+|++++||+|+|+|++| +|+|.+-+. ..|+|++
T Consensus 454 ~v~~~~~d~~-~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~ 530 (679)
T PRK05580 454 RILRIDRDTT-RRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVA 530 (679)
T ss_pred cEEEEecccc-ccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHH
Confidence 9999999997 124679999999999999999999999999999999999 566766544 5688888
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-08 Score=134.22 Aligned_cols=85 Identities=11% Similarity=0.053 Sum_probs=76.0
Q ss_pred EEECChhhHHHHHHHhhcC-----CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcE
Q psy15269 1064 LIRTPKSQKIVNLLSFLEG-----KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSL 1138 (1858)
Q Consensus 1064 ~~~v~~~~Kl~~Ll~lL~~-----~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~I 1138 (1858)
.++....+|...+...+.. .++||||+|+..++.+++.|.+.|+++..|||+ |.+|+..+.+|+.++.+|
T Consensus 407 ~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak-----q~eREa~Iia~Ag~~g~V 481 (830)
T PRK12904 407 LIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK-----NHEREAEIIAQAGRPGAV 481 (830)
T ss_pred eEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc-----hHHHHHHHHHhcCCCceE
Confidence 3445677888888887742 789999999999999999999999999999993 789999999999999999
Q ss_pred EEeccccccCCCCCC
Q psy15269 1139 VIMTLSDFIGNDFTN 1153 (1858)
Q Consensus 1139 LVATDVAARGLDIp~ 1153 (1858)
+||||+|+||+||+-
T Consensus 482 tIATNmAGRGtDI~L 496 (830)
T PRK12904 482 TIATNMAGRGTDIKL 496 (830)
T ss_pred EEecccccCCcCccC
Confidence 999999999999865
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-08 Score=134.35 Aligned_cols=82 Identities=11% Similarity=0.077 Sum_probs=73.5
Q ss_pred ECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEE
Q psy15269 1066 RTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVI 1140 (1858)
Q Consensus 1066 ~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILV 1140 (1858)
+....+|...++..+. +..+||||+|+..++.++..|.+.|+++..||+++. |.+|..+.+.|+.| .|+|
T Consensus 423 ~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~---q~Ea~iia~Ag~~G--~VtI 497 (896)
T PRK13104 423 YLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFH---EKEAQIIAEAGRPG--AVTI 497 (896)
T ss_pred EcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCC---hHHHHHHHhCCCCC--cEEE
Confidence 3456677777776653 278999999999999999999999999999999999 99999999999999 4999
Q ss_pred eccccccCCCCC
Q psy15269 1141 MTLSDFIGNDFT 1152 (1858)
Q Consensus 1141 ATDVAARGLDIp 1152 (1858)
|||+|+||+||.
T Consensus 498 ATNmAGRGtDI~ 509 (896)
T PRK13104 498 ATNMAGRGTDIV 509 (896)
T ss_pred eccCccCCccee
Confidence 999999999985
|
|
| >KOG0941|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-10 Score=147.07 Aligned_cols=290 Identities=23% Similarity=0.303 Sum_probs=173.4
Q ss_pred CCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCc--eEEeecCceEEEEEc-------
Q psy15269 319 LYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDV--GAVSCGESHTLVLSQ------- 389 (1858)
Q Consensus 319 l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I--~~IAcG~~HTlaLt~------- 389 (1858)
+.-++|.+++||++|+.+++..|++|+||.|.+||+|.+.......|..+..+.++ .+|+||.+|+++++.
T Consensus 11 l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~ 90 (850)
T KOG0941|consen 11 LNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTD 90 (850)
T ss_pred HhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcch
Confidence 44567999999999999999999999999999999999955444448888888874 789999998887765
Q ss_pred CCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEeCCCCCCCccccccEEecCC
Q psy15269 390 DGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGL 469 (1858)
Q Consensus 390 dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l 469 (1858)
+|. ++.+|....||+|++...+ ...|..+..+
T Consensus 91 e~~-~fs~Ga~~~~q~~h~~~~~-----------------------------------------------~~~~~~v~e~ 122 (850)
T KOG0941|consen 91 EGK-VFSFGAGSTGQLGHSLTEN-----------------------------------------------EVLPLLVLEL 122 (850)
T ss_pred hcc-ccccCCccccccccccccc-----------------------------------------------ccccHHHHHH
Confidence 884 8888888888887643222 2235555556
Q ss_pred CCCCEEEEEEcCceEEEEEe-CCeEEEEeCCCCCCCCCCCCCCCcccCeeeec---CCCceEEEEEecCcceEEEeecCC
Q psy15269 470 SSHQIVDVSIGDSHVLALSQ-YNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVG---LEDVCVRQICAGSLFSIAYTVPPS 545 (1858)
Q Consensus 470 ~~~~Iv~Ia~G~~HtlALt~-dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~---L~~~~I~~Ia~G~~hS~alt~~~~ 545 (1858)
.+..+.+|+||..|+++... -|++|.+|.+..| .+...... .+..... -.+..+..+.+|+++++.+.....
T Consensus 123 i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG---k~~i~s~s-~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~~ 198 (850)
T KOG0941|consen 123 IGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG---KGVIVSLS-GEDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKGE 198 (850)
T ss_pred HhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC---Cceeeccc-hhhhcccccHHHHHHHHHHhcCCCceEEEEeecc
Confidence 67789999999999998875 5999999999887 11111100 0100000 112235568899999999874211
Q ss_pred CCcEEeeccCcccccC-CcchhhHHH--HHHhhhccccCCCC--------CCccccch-hHHHHHHHHHhhhhhhhhhhh
Q psy15269 546 NSALSSAFTPLCVDVR-PHTFTLIRE--FLEQYSACFETGDY--------IPFCSKVT-HAQFILLLLRLLSSHLYLALI 613 (1858)
Q Consensus 546 dG~vy~WG~n~~gqLg-~~t~~~l~~--~l~~~~~~~~~~d~--------~p~~s~~~-~~~f~~~~l~l~s~~~~~~~~ 613 (1858)
+.+ |.+...++. ..++-.+.. -......+.+.+++ .-+++.+| +..|.. +..+.+
T Consensus 199 ~~~----~~~d~~n~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~llss~a~~~~s~l~---k~~~~~------ 265 (850)
T KOG0941|consen 199 NSQ----GDNDLSNLNPSDHYVDLIAERRVALLLKKLEKGDNTAILNAIELLLSSLACDNTSFLD---KSRDCN------ 265 (850)
T ss_pred ccc----ccchhhhcCCcccceechhhhhHHHHHhhcccchHHHHHHHHHHHhhhHhhccchhhh---hhhccc------
Confidence 111 111111111 112211100 00111111111111 22444444 222221 222222
Q ss_pred cCCcccccccchHHHHHHHHHHhcCCCcHHHHHH---HHHHHhccccccCCCHHHHHHHHHhhcC
Q psy15269 614 GARSSSVLGNETAALRHVLFKLVDMETSPEIETL---LTDCLAIGASLLLPPVVEQLDLLKTLLS 675 (1858)
Q Consensus 614 ~~~~~~~lg~~~~~l~~l~~~li~~~~~~~~~~~---~~~~L~~g~s~llp~~~Er~~~l~~ll~ 675 (1858)
.+++....|++.+.++..+..+.....-.+.+++ ++..|---||-- |+..|+++.+ .+||
T Consensus 266 ~~c~~~~~~ld~~~~~~~f~~l~~~~~~~~~~~l~~~~~~~L~~~~s~~-~~d~e~~~i~-l~l~ 328 (850)
T KOG0941|consen 266 VFCSFQIHGLDLNLARPAFLELTLPLFCKILSELLVAIQKRLIRLWSKY-PADQEALYIL-LLLP 328 (850)
T ss_pred cccceecccccHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhC-CcHHHHHHHH-HHcc
Confidence 2355667999999999998888764444444333 333344444433 5566665543 3444
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.2e-09 Score=99.78 Aligned_cols=76 Identities=26% Similarity=0.392 Sum_probs=72.3
Q ss_pred HHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccC
Q psy15269 1097 RIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAG 1175 (1858)
Q Consensus 1097 ~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag 1175 (1858)
.+++.|++.++.+..+||+++ +.+|..+++.|++++..|||+|+++++|+|++++++||.+++|.+...|+||+++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~---~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR 77 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLS---QEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGR 77 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCC---HHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcc
Confidence 577888888999999999999 9999999999999999999999999999999999999999999999999999854
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-08 Score=128.37 Aligned_cols=76 Identities=20% Similarity=0.194 Sum_probs=64.9
Q ss_pred HHHHHHHHhhC--CCeEEEEecCCCCccHHHH--HHHHHHHhcCCCcEEEeccccccCCCCCCcceE--EEcCCCCC---
Q psy15269 1095 ASRIISAVQDS--NMMTIPMSNNGTSWSHVEC--LELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQV--IIYNLPLS--- 1165 (1858)
Q Consensus 1095 ad~L~~~L~~~--g~~~~~LHG~ms~~~Q~eR--~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~V--INyDlP~~--- 1165 (1858)
++.+.+.|++. +.++..+|++++ +.++ .+++++|++|+.+|||+|++++||+|+|+|++| +|+|..-.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~---~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTT---SRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccc---cCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 58888888875 889999999998 5555 899999999999999999999999999999998 58886433
Q ss_pred -------hhhhhhhc
Q psy15269 1166 -------INHYVFQI 1173 (1858)
Q Consensus 1166 -------~e~YIHRI 1173 (1858)
...|+|++
T Consensus 348 ~ra~E~~~~ll~q~~ 362 (505)
T TIGR00595 348 FRAAERGFQLLTQVA 362 (505)
T ss_pred cchHHHHHHHHHHHH
Confidence 35678877
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0352|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-08 Score=121.14 Aligned_cols=196 Identities=12% Similarity=0.171 Sum_probs=138.9
Q ss_pred hHHhhhhhhcC--CCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHH--HHH
Q psy15269 967 LVYSYLIQQTA--LSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEE--SNI 1042 (1858)
Q Consensus 967 ~~~A~lL~~mG--F~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~l--a~~ 1042 (1858)
.|+|-...+-| |.|+ |=.|-..|..+-- ..+..-.||-..+|++- ++.
T Consensus 147 VDEAHCVSQWGHDFRPD--------YL~LG~LRS~~~~--------------------vpwvALTATA~~~VqEDi~~qL 198 (641)
T KOG0352|consen 147 VDEAHCVSQWGHDFRPD--------YLTLGSLRSVCPG--------------------VPWVALTATANAKVQEDIAFQL 198 (641)
T ss_pred echhhhHhhhccccCcc--------hhhhhhHHhhCCC--------------------CceEEeecccChhHHHHHHHHH
Confidence 33444577766 8888 7777788877632 11122246666676653 334
Q ss_pred hcCCCEEEEEccCCcccEEEEEEECC----hhhHHHHHHHhh----cC------------CcEEEEecChHHHHHHHHHH
Q psy15269 1043 EVEDPIMKLVKPSSVHLVKQYLIRTP----KSQKIVNLLSFL----EG------------KRSLIFVKTYRDASRIISAV 1102 (1858)
Q Consensus 1043 ~L~dpv~I~v~~~~~~~I~Q~~~~v~----~~~Kl~~Ll~lL----~~------------~k~IIFvnTk~~ad~L~~~L 1102 (1858)
-|++|+-|--.+.-..++ ||.+. -.+-+..|-+|- -. +=.||||+|++.|+.++-.|
T Consensus 199 ~L~~PVAiFkTP~FR~NL---FYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l 275 (641)
T KOG0352|consen 199 KLRNPVAIFKTPTFRDNL---FYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIML 275 (641)
T ss_pred hhcCcHHhccCcchhhhh---hHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHh
Confidence 568998765443322222 11111 011222333322 10 23899999999999999999
Q ss_pred hhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc--cC-cc--
Q psy15269 1103 QDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI--AG-HK-- 1177 (1858)
Q Consensus 1103 ~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI--ag-~~-- 1177 (1858)
...|+++.++|.++. ..+|..+.+++-++++.|++||.....|+|-|+|.+||++|+|.+...|.+-. || .|
T Consensus 276 ~~~Gi~A~AYHAGLK---~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~ 352 (641)
T KOG0352|consen 276 EIAGIPAMAYHAGLK---KKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKR 352 (641)
T ss_pred hhcCcchHHHhcccc---cchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCc
Confidence 999999999999998 99999999999999999999999999999999999999999999999999977 22 22
Q ss_pred -eEEEEecCcccHHHHHHHHH
Q psy15269 1178 -EAIAFYDPVADIGLASSLIK 1197 (1858)
Q Consensus 1178 -~aitfvt~~~e~~~l~~Ie~ 1197 (1858)
.+-.+|.. +|.+.+..|.+
T Consensus 353 SyCRLYYsR-~D~~~i~FLi~ 372 (641)
T KOG0352|consen 353 SYCRLYYSR-QDKNALNFLVS 372 (641)
T ss_pred cceeeeecc-cchHHHHHHHh
Confidence 45556666 67666665543
|
|
| >KOG2626|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.9e-08 Score=121.29 Aligned_cols=135 Identities=16% Similarity=0.254 Sum_probs=103.1
Q ss_pred EEEecCCeEEEecCCCCceEEecccccCceEEEEEEEEeecCCCcc-eEEEEEeeccc-cCCCCCCCceeEEEeCCceee
Q psy15269 1422 CTVECGGQSLIHGPGTRGYGVANIGITRGCYQWKFLIVNEHKGNEG-TCIGVTRWPIR-DYNHRTTGDMWLYRAYSGNVY 1499 (1858)
Q Consensus 1422 ~~~~~~~~~~~~~~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~-~~vGva~~~~~-~~~~~~~~~~W~y~~~~g~~~ 1499 (1858)
..+++ ...-..++-||+-|+|++|+..|+|| |+|.++...++. +=+|..+.--. .--.|.|--+|+||+-.|.-|
T Consensus 304 l~Is~-drlt~tgeKGy~MvRAshgv~~G~WY--FEI~vd~~pd~~a~RlGwsq~~g~LqApvGYdkfsY~wRdk~GtKf 380 (544)
T KOG2626|consen 304 LKISE-DRLTATGEKGYRMVRASHGVLEGAWY--FEIKVDEMPDDAAIRLGWSQLYGNLQAPVGYDKFSYGWRDKKGTKF 380 (544)
T ss_pred ccccc-cceeeecccceeeeeeccccccccee--EEEEeecCCCccceeeeccccccccccccccccccccccccCCcch
Confidence 44554 34444577899999999999999655 555554443331 44555443333 444567777999999999999
Q ss_pred eCCCCCccCCCcCCCCEEEEEEeccCce--------------------------------------------EEEEeCCc
Q psy15269 1500 HSGEQTTMLPSFTQGDYITVVLDMDAQT--------------------------------------------LSFGKNGE 1535 (1858)
Q Consensus 1500 h~~~~~~~~~~~~~gd~i~v~lDm~~~t--------------------------------------------l~f~~ng~ 1535 (1858)
|-+....|..+|..||+||+.+++=+.+ |.|+|||.
T Consensus 381 h~s~gk~Y~~gf~qGDvLGf~I~LP~~~~~~~~lp~~~kdk~lI~yK~~lyfe~~d~v~k~~k~l~~~pgS~I~f~KNG~ 460 (544)
T KOG2626|consen 381 HESLGKHYSDGFGQGDVLGFYINLPKDLSPEKYLPLTHKDKFLIKYKGHLYFEDPDNVAKIEKTLKIKPGSEIEFFKNGV 460 (544)
T ss_pred hhhhhhhhhhhccCCceEEEEEecCCcccccccCCccccccceeeeeeeeEEEccchhhhhhhccccCCCceEEEeeccc
Confidence 9999999999999999999999875544 46999999
Q ss_pred cccccccCCC-CCCceeEEEEEeecC
Q psy15269 1536 EPHLAFQDLD-TSAPLYPIVLFYSTN 1560 (1858)
Q Consensus 1536 ~~GvAF~~l~-~~~~lyP~Vs~y~~~ 1560 (1858)
.+|+||+||- .| ..||+||.|.+.
T Consensus 461 ~qG~Ay~ni~~~G-~YyPaIS~yks~ 485 (544)
T KOG2626|consen 461 SQGVAYENIYKAG-AYYPAISIYKSC 485 (544)
T ss_pred chhhhhhhhhccc-cccceeeecccc
Confidence 9999999998 46 499999999763
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=6e-08 Score=129.46 Aligned_cols=97 Identities=11% Similarity=0.165 Sum_probs=82.2
Q ss_pred HHHHHHHhhcC-CcEEEEecChHHHHHHHHHHhhCC---CeEEEEecCCCCccHHHH----HHHHHHH-hcCC---CcEE
Q psy15269 1072 KIVNLLSFLEG-KRSLIFVKTYRDASRIISAVQDSN---MMTIPMSNNGTSWSHVEC----LELLNLF-NTGK---SSLV 1139 (1858)
Q Consensus 1072 Kl~~Ll~lL~~-~k~IIFvnTk~~ad~L~~~L~~~g---~~~~~LHG~ms~~~Q~eR----~~~L~~F-r~G~---~~IL 1139 (1858)
.+..+.+.+.. .+++|||||++.|+.+++.|++.+ .++..+||.++ +.+| .++++.| |+|+ ..||
T Consensus 549 ~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~---~~dR~~~E~~vl~~fgk~g~r~~~~IL 625 (878)
T PRK09694 549 LLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFT---LNDRREKEQRVIENFGKNGKRNQGRIL 625 (878)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCC---HHHHHHHHHHHHHHHHhcCCcCCCeEE
Confidence 34455554443 789999999999999999999764 68999999999 8888 5678899 7776 4799
Q ss_pred EeccccccCCCCCCcceEEEcCCCCChhhhhhhcc
Q psy15269 1140 IMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIA 1174 (1858)
Q Consensus 1140 VATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIa 1174 (1858)
|||+|+.+|||| +++.+|+...| .+.||||+|
T Consensus 626 VaTQViE~GLDI-d~DvlItdlaP--idsLiQRaG 657 (878)
T PRK09694 626 VATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLG 657 (878)
T ss_pred EECcchhheeec-CCCeEEECCCC--HHHHHHHHh
Confidence 999999999999 68999999998 679999993
|
|
| >PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-08 Score=89.61 Aligned_cols=51 Identities=37% Similarity=0.551 Sum_probs=45.3
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEEecCcceEEE
Q psy15269 490 YNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAY 540 (1858)
Q Consensus 490 dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~al 540 (1858)
||+||+||.|++||||..........|+++..+.+.+|++|+||.+||+++
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 699999999999999954555556789999999999999999999999986
|
The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A. |
| >PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-08 Score=89.33 Aligned_cols=50 Identities=38% Similarity=0.710 Sum_probs=46.0
Q ss_pred CCcEEEEeCCCCCCcC-CCCCcccccceeeecCCCCCcEEEEEecCceEEEE
Q psy15269 287 EGEVYSWGVGEHGKLG-HGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAV 337 (1858)
Q Consensus 287 dG~VysWG~N~~GQLG-~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aL 337 (1858)
||+||+||.|++|||| .++......|++|.. +.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~-~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPF-LSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGG-GTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECC-CCCCCEEEEEeCcceEEEC
Confidence 7999999999999999 788888999999986 6778999999999999986
|
The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A. |
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.9e-07 Score=124.18 Aligned_cols=127 Identities=19% Similarity=0.186 Sum_probs=99.2
Q ss_pred hhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC---CCcEEEe
Q psy15269 1070 SQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG---KSSLVIM 1141 (1858)
Q Consensus 1070 ~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G---~~~ILVA 1141 (1858)
..|+..|..++. +.|+|||++-....+.|.+.|...|+....|||+++ +.+|..++++|.+. ..-+|++
T Consensus 470 SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts---~~eRq~~Id~Fn~~~s~~~VfLLS 546 (1033)
T PLN03142 470 SGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTG---GEDRDASIDAFNKPGSEKFVFLLS 546 (1033)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCC---HHHHHHHHHHhccccCCceEEEEe
Confidence 345555444443 379999999999999999999999999999999999 99999999999753 3457999
Q ss_pred ccccccCCCCCCcceEEEcCCCCChhhhhh------hccCcc--eEEEEecCc-ccHHHHHHHHHHH
Q psy15269 1142 TLSDFIGNDFTNVEQVIIYNLPLSINHYVF------QIAGHK--EAIAFYDPV-ADIGLASSLIKLL 1199 (1858)
Q Consensus 1142 TDVAARGLDIp~V~~VINyDlP~~~e~YIH------RIag~~--~aitfvt~~-~e~~~l~~Ie~~l 1199 (1858)
|.+++.||++...++||+||+|++|..+.| |||.+. ..+.|++.. -|..++....+.+
T Consensus 547 TrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl 613 (1033)
T PLN03142 547 TRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKL 613 (1033)
T ss_pred ccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999955555 555555 567777753 2344444444333
|
|
| >KOG0941|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-09 Score=136.29 Aligned_cols=134 Identities=32% Similarity=0.636 Sum_probs=114.0
Q ss_pred cceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEe-------C
Q psy15269 268 IVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTE-------D 340 (1858)
Q Consensus 268 i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~-------d 340 (1858)
.++|.+++||.+|+++++..|++|+||.|.+||+|++.......|..++. +.+....+|+||..|+++++. +
T Consensus 13 ~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~s-l~g~p~a~v~~g~~hs~~lS~~~~~lt~e 91 (850)
T KOG0941|consen 13 YKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVES-LKGVPLAQVSAGEAHSFALSSHTVLLTDE 91 (850)
T ss_pred hhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchh-hcCCcHHHHhcCCCcchhhhhchhhcchh
Confidence 34677788999999999999999999999999999995544444888875 788889999999999888776 9
Q ss_pred CeEEEEecCCCCCCCCCCCCccccccccccCC--CceEEeecCceEEEEEc-CCCEEEEEeCCCCC
Q psy15269 341 GLLYTWGEGDHGRLGHGDLKSRHTPTLVTELS--DVGAVSCGESHTLVLSQ-DGHTVWSMGSGNLG 403 (1858)
Q Consensus 341 G~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~--~I~~IAcG~~HTlaLt~-dG~tVysWG~N~~G 403 (1858)
|.++++|....||+|++.......|..+...- .+.+|+||..|+++... -|+ +|.+|.+..|
T Consensus 92 ~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~q-sf~~~~~~sG 156 (850)
T KOG0941|consen 92 GKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQ-SFSFGKGASG 156 (850)
T ss_pred ccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcc-eeecccCCCC
Confidence 99999999999999997777777787776543 38999999999998764 464 9999998877
|
|
| >PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.5e-07 Score=74.58 Aligned_cols=30 Identities=43% Similarity=0.839 Sum_probs=26.2
Q ss_pred EEEEEEcCceEEEEEeCCeEEEEeCCCCCC
Q psy15269 474 IVDVSIGDSHVLALSQYNEVYAWGSNTMGQ 503 (1858)
Q Consensus 474 Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQ 503 (1858)
|++|+||.+|+++|+++|+||+||.|++||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
|
|
| >PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-07 Score=74.03 Aligned_cols=30 Identities=40% Similarity=0.873 Sum_probs=26.1
Q ss_pred EEEEEecCceEEEEEeCCeEEEEecCCCCC
Q psy15269 324 VTQVSAGHSHSAAVTEDGLLYTWGEGDHGR 353 (1858)
Q Consensus 324 IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQ 353 (1858)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
|
|
| >KOG0349|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.3e-07 Score=107.87 Aligned_cols=110 Identities=26% Similarity=0.411 Sum_probs=83.5
Q ss_pred ceEEeccccc-CceEEEEEEEEeecCCCcceE-EEEEeeccccCCCCCCCceeEEEeCCceeeeCCCCCccCCCcCCCCE
Q psy15269 1439 GYGVANIGIT-RGCYQWKFLIVNEHKGNEGTC-IGVTRWPIRDYNHRTTGDMWLYRAYSGNVYHSGEQTTMLPSFTQGDY 1516 (1858)
Q Consensus 1439 ~~~l~~~~~s-~G~~~W~~~i~~~~~~~~~~~-vGva~~~~~~~~~~~~~~~W~y~~~~g~~~h~~~~~~~~~~~~~gd~ 1516 (1858)
-=..|++|+- .|.||||+.+... |-| ||-++..- .-.+|+.-.+.|| +..|.--||-.-..|+..|+..|+
T Consensus 118 hGcRaT~Gl~gkGK~YyEvtitd~-----GLCRVGWsT~qa-sLdlGt~~~gFGf-GGTGkKS~nkqFDdYGe~Ft~~Dv 190 (725)
T KOG0349|consen 118 HGCRATAGLYGKGKYYYEVTITDK-----GLCRVGWSTLQA-SLDLGTGLDGFGF-GGTGKKSTNKQFDDYGEPFTLNDV 190 (725)
T ss_pred hccccccccccCceEEEEEEeccC-----ceeeechhhccc-ccccCcccccccc-CccCccccccccccccCcccccce
Confidence 3456777877 8999999987643 333 34333211 4456788888888 566666565555889999999999
Q ss_pred EEEEEeccCceEEEEeCCcccccccc---CCCCCCceeEEEEE
Q psy15269 1517 ITVVLDMDAQTLSFGKNGEEPHLAFQ---DLDTSAPLYPIVLF 1556 (1858)
Q Consensus 1517 i~v~lDm~~~tl~f~~ng~~~GvAF~---~l~~~~~lyP~Vs~ 1556 (1858)
|||.||+|.+|+.|+|||+.+|+||+ ++ +...|||||-+
T Consensus 191 IGCyLDld~~~v~fsKNG~~lg~AF~ip~~~-kn~~lfPAvvl 232 (725)
T KOG0349|consen 191 IGCYLDLDSRTVWFSKNGEQLGAAFSIPVKY-KNSNLFPAVVL 232 (725)
T ss_pred eeEEEeccCceEEEecCccccceeEEcChhh-cccccchheee
Confidence 99999999999999999999999998 34 23369999976
|
|
| >KOG4030|consensus | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.4e-06 Score=89.68 Aligned_cols=145 Identities=20% Similarity=0.308 Sum_probs=107.0
Q ss_pred eeeeEecCCCceE--EEEecCCeEEEecCCCCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeeccc--cCCCCC
Q psy15269 1409 IDSVSFDKEKCVC--CTVECGGQSLIHGPGTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR--DYNHRT 1484 (1858)
Q Consensus 1409 v~~f~~D~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~~--~~~~~~ 1484 (1858)
+-.+..|...+.+ +++.+ |..+. |.+=+||++++-..+.|+||.|... |. -+||+|+.... ..-.|.
T Consensus 26 ~P~V~LD~~hMG~dVvilk~-g~Ric----GtGG~lAtaPlvQnKsYFevkiQ~t--G~--WgiGlat~q~~l~~~p~g~ 96 (197)
T KOG4030|consen 26 VPTVRLDVGHMGKDVVILKE-GERIC----GTGGALATAPLVQNKSYFEVKIQQT--GT--WGIGLATKQSPLDKVPGGC 96 (197)
T ss_pred CCcEEeehhccCCcEEEEec-CcEEe----ccCceeeeeeeecccceEEEEEeec--ce--eeeeeeeccCccccCCCCC
Confidence 4567889988888 55554 44432 3445899999999999999987642 22 35555555555 555568
Q ss_pred CCceeEEEeCCceeeeCCCC-CccCCCc--CCCCEEEEEEeccCceEEEEeCCccccccccCCCCCCceeEEEEEeecCC
Q psy15269 1485 TGDMWLYRAYSGNVYHSGEQ-TTMLPSF--TQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNA 1561 (1858)
Q Consensus 1485 ~~~~W~y~~~~g~~~h~~~~-~~~~~~~--~~gd~i~v~lDm~~~tl~f~~ng~~~GvAF~~l~~~~~lyP~Vs~y~~~~ 1561 (1858)
+.++|+.+ ++|-++||++. .|..-.. ..||.|||-.|-.| |.||+||+.+-.-|+|+.+ ++||.|=+
T Consensus 97 d~~sw~~r-~dga~~hnnee~~r~pa~~~p~EGDvVGvayDHVE--LnfY~NGKn~e~p~~gvRG--~vyPvvYV----- 166 (197)
T KOG4030|consen 97 DEKSWGIR-DDGAIAHNNEEVARMPATVFPEEGDVVGVAYDHVE--LNFYVNGKNVEDPITGVRG--PVYPVVYV----- 166 (197)
T ss_pred cceeEEEc-cCCchhcccHHHhcCccccCCccCcEEEEEeeeEE--EEEEEcCceeccccccccc--ceeeEEEe-----
Confidence 99999886 78889999987 4433233 68999999998765 8899999999999999955 59999987
Q ss_pred CCCeEEEEEeeec
Q psy15269 1562 NGEKVKITDMTVC 1574 (1858)
Q Consensus 1562 ~~~~v~~~~~~~~ 1574 (1858)
+. =.|.|.++.
T Consensus 167 -dd-sAILD~~f~ 177 (197)
T KOG4030|consen 167 -DD-SAILDLKFK 177 (197)
T ss_pred -CC-ceEEEEEec
Confidence 22 246666654
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.2e-06 Score=100.46 Aligned_cols=113 Identities=18% Similarity=0.184 Sum_probs=94.7
Q ss_pred hhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc
Q psy15269 1069 KSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL 1143 (1858)
Q Consensus 1069 ~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD 1143 (1858)
.....+.|+.-++ ++|++|-+=||+.|+.|+++|.+.|+++..||++.. .-+|.+++++.|.|.+.|||--+
T Consensus 428 ~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdid---TlER~eIirdLR~G~~DvLVGIN 504 (663)
T COG0556 428 TKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDID---TLERVEIIRDLRLGEFDVLVGIN 504 (663)
T ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccch---HHHHHHHHHHHhcCCccEEEeeh
Confidence 3445666666554 389999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccccCCCCCCcceEEEcCC-----CCChhhhhhhc---cCcc--eEEEEec
Q psy15269 1144 SDFIGNDFTNVEQVIIYNL-----PLSINHYVFQI---AGHK--EAIAFYD 1184 (1858)
Q Consensus 1144 VAARGLDIp~V~~VINyDl-----P~~~e~YIHRI---ag~~--~aitfvt 1184 (1858)
+.-.|||+|.|.+|.-+|. .++..+-||-| |++. .+|.+.+
T Consensus 505 LLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 505 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred hhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCeEEEEch
Confidence 9999999999999999884 34455555544 5444 6666544
|
|
| >KOG0353|consensus | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.2e-07 Score=103.84 Aligned_cols=111 Identities=18% Similarity=0.260 Sum_probs=98.0
Q ss_pred ccEEEEEEECC--hhhHHHHHHHhhcC----CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHH
Q psy15269 1058 HLVKQYLIRTP--KSQKIVNLLSFLEG----KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLF 1131 (1858)
Q Consensus 1058 ~~I~Q~~~~v~--~~~Kl~~Ll~lL~~----~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~F 1131 (1858)
.++...+..-| ..+-.+.+.+++++ ...||||=+++.++.++..|+..|+.+..+|..|. +.+|..+-+.+
T Consensus 287 ~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~le---p~dks~~hq~w 363 (695)
T KOG0353|consen 287 PNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLE---PEDKSGAHQGW 363 (695)
T ss_pred CCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccC---ccccccccccc
Confidence 34444433333 45557778888875 67899999999999999999999999999999998 99999999999
Q ss_pred hcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhh
Q psy15269 1132 NTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVF 1171 (1858)
Q Consensus 1132 r~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIH 1171 (1858)
-.|+++|+|||-....|||-|+|++||+..+|.++|.|.+
T Consensus 364 ~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 364 IAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred cccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHH
Confidence 9999999999999999999999999999999999999999
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.9e-05 Score=102.57 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=75.1
Q ss_pred EECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEE
Q psy15269 1065 IRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLV 1139 (1858)
Q Consensus 1065 ~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~IL 1139 (1858)
++....+|..+++.-+. +.++||||+|...++.++..|.+.|+++..||++++ +.+|..+.+.|+.|. |+
T Consensus 427 iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~---~~Ea~ii~~Ag~~G~--Vt 501 (908)
T PRK13107 427 VYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFH---EREAEIVAQAGRTGA--VT 501 (908)
T ss_pred EEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCccc---HHHHHHHHhCCCCCc--EE
Confidence 34567788888777654 378999999999999999999999999999999999 999999999999998 99
Q ss_pred EeccccccCCCCC
Q psy15269 1140 IMTLSDFIGNDFT 1152 (1858)
Q Consensus 1140 VATDVAARGLDIp 1152 (1858)
||||+|+||+||.
T Consensus 502 IATnmAGRGTDIk 514 (908)
T PRK13107 502 IATNMAGRGTDIV 514 (908)
T ss_pred EecCCcCCCccee
Confidence 9999999999986
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-05 Score=108.91 Aligned_cols=87 Identities=15% Similarity=0.204 Sum_probs=77.1
Q ss_pred CcEEEEecChHHHHHHHHHHhhC------CC---eEEEEecCCCCccHHHHHHHHHHHhcCCC-cEEEeccccccCCCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDS------NM---MTIPMSNNGTSWSHVECLELLNLFNTGKS-SLVIMTLSDFIGNDFT 1152 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~------g~---~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~-~ILVATDVAARGLDIp 1152 (1858)
.|+||||.+++.|+.+.+.|++. ++ .+..+||+.+ +|.+++++|++++. +|+|++|++.+|+|+|
T Consensus 699 ~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~-----~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP 773 (1123)
T PRK11448 699 GKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID-----KPDQLIRRFKNERLPNIVVTVDLLTTGIDVP 773 (1123)
T ss_pred CcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc-----chHHHHHHHhCCCCCeEEEEecccccCCCcc
Confidence 68999999999999999988752 22 4667999886 46779999999887 6999999999999999
Q ss_pred CcceEEEcCCCCChhhhhhhcc
Q psy15269 1153 NVEQVIIYNLPLSINHYVFQIA 1174 (1858)
Q Consensus 1153 ~V~~VINyDlP~~~e~YIHRIa 1174 (1858)
.|.+||.++.|.+...|+|+||
T Consensus 774 ~v~~vVf~rpvkS~~lf~QmIG 795 (1123)
T PRK11448 774 SICNLVFLRRVRSRILYEQMLG 795 (1123)
T ss_pred cccEEEEecCCCCHHHHHHHHh
Confidence 9999999999999999999993
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.1e-06 Score=103.20 Aligned_cols=88 Identities=18% Similarity=0.252 Sum_probs=85.1
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYN 1161 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyD 1161 (1858)
..+++||+..+..++.++..|...|+ +..+.|+.+ +.+|..++++||.|++++||++.|+..|+|+|+++.+|...
T Consensus 283 ~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~---~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~ 358 (442)
T COG1061 283 GDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETP---KEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILR 358 (442)
T ss_pred CCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCC---HHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeC
Confidence 57999999999999999999999888 999999999 99999999999999999999999999999999999999999
Q ss_pred CCCChhhhhhhc
Q psy15269 1162 LPLSINHYVFQI 1173 (1858)
Q Consensus 1162 lP~~~e~YIHRI 1173 (1858)
...++..|+||+
T Consensus 359 ~t~S~~~~~Q~l 370 (442)
T COG1061 359 PTGSRRLFIQRL 370 (442)
T ss_pred CCCcHHHHHHHh
Confidence 999999999998
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.7e-06 Score=102.65 Aligned_cols=150 Identities=12% Similarity=0.110 Sum_probs=107.0
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECC-hhhHHHHHHHhhcC-----------CcEEEEecChHHHH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTP-KSQKIVNLLSFLEG-----------KRSLIFVKTYRDAS 1096 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~-~~~Kl~~Ll~lL~~-----------~k~IIFvnTk~~ad 1096 (1858)
|||.-. -+++|+++=-+++.- . .....++.+.+++. ..+|.+.+.++.+. +++|||++++++|.
T Consensus 379 SATVgN-p~elA~~l~a~lV~y--~-~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h 454 (830)
T COG1202 379 SATVGN-PEELAKKLGAKLVLY--D-ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCH 454 (830)
T ss_pred EeecCC-hHHHHHHhCCeeEee--c-CCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHH
Confidence 666432 234565554443322 1 22233555555554 67777666665541 78999999999999
Q ss_pred HHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEE-------EcCCCCChhhh
Q psy15269 1097 RIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVI-------IYNLPLSINHY 1169 (1858)
Q Consensus 1097 ~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VI-------NyDlP~~~e~Y 1169 (1858)
+|+.+|...|+++..+|++++ +.+|..+-..|.++++.+.|+|-..+-|+|||.-..++ .+=.|.+..+.
T Consensus 455 ~lA~~L~~kG~~a~pYHaGL~---y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM 531 (830)
T COG1202 455 ELADALTGKGLKAAPYHAGLP---YKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQM 531 (830)
T ss_pred HHHHHhhcCCcccccccCCCc---HHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHH
Confidence 999999999999999999999 99999999999999999999999999999998754432 22234444444
Q ss_pred hhhccC-----cceEEEEecC
Q psy15269 1170 VFQIAG-----HKEAIAFYDP 1185 (1858)
Q Consensus 1170 IHRIag-----~~~aitfvt~ 1185 (1858)
.-|.|+ +|..+.++.|
T Consensus 532 ~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 532 LGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred hcccCCCCcccCceEEEEecC
Confidence 555522 3367777776
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00014 Score=97.58 Aligned_cols=255 Identities=13% Similarity=0.097 Sum_probs=186.3
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhh-ccccccccccccc-Cccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKF-VRDMRHVSNNILM-SPNY 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~-v~~l~~t~~~ll~-~~~~ 946 (1858)
-.|-++-||=-||.|==..+.--.++-|+..+.. ++|...-+...-...+..| +|+++.| .+||. +-.|
T Consensus 644 KQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~L--------SRF~s~kE~~~il~~la~G~vDIvIGT-HrLL~kdv~F 714 (1139)
T COG1197 644 KQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVL--------SRFRSAKEQKEILKGLAEGKVDIVIGT-HRLLSKDVKF 714 (1139)
T ss_pred CeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEe--------cccCCHHHHHHHHHHHhcCCccEEEec-hHhhCCCcEE
Confidence 3568889999999998888888888889876544 5666665544445555554 7788887 66665 5556
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNS 1026 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~ 1026 (1858)
.++| =+++||=.| | |...- +.|.+.|... ++.
T Consensus 715 kdLG---LlIIDEEqR----F---------GVk~K---------EkLK~Lr~~V-----------------------DvL 746 (1139)
T COG1197 715 KDLG---LLIIDEEQR----F---------GVKHK---------EKLKELRANV-----------------------DVL 746 (1139)
T ss_pred ecCC---eEEEechhh----c---------CccHH---------HHHHHHhccC-----------------------cEE
Confidence 6633 356898877 5 65444 3333333322 233
Q ss_pred CCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHH-hhcCCcEEEEecChHHHHHHHHHHhhC
Q psy15269 1027 TDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLS-FLEGKRSLIFVKTYRDASRIISAVQDS 1105 (1858)
Q Consensus 1027 ~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~-lL~~~k~IIFvnTk~~ad~L~~~L~~~ 1105 (1858)
+-|||+=+..-.++-..++|--.|...+...-.|+-++..-+..--.+.+++ +.+++++.--.|..++.+.+++.|++.
T Consensus 747 TLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~L 826 (1139)
T COG1197 747 TLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLREL 826 (1139)
T ss_pred EeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHh
Confidence 4499999999999999999988888777777778777766555544555554 556799999999999999999999984
Q ss_pred --CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhh----hccCcc-e
Q psy15269 1106 --NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVF----QIAGHK-E 1178 (1858)
Q Consensus 1106 --g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIH----RIag~~-~ 1178 (1858)
...+...||.|+ .++=+++|.+|-+|+.+|||||-+..=|||||+++-+|-.+.-.--=.=+| |||+.. .
T Consensus 827 VPEarI~vaHGQM~---e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~ 903 (1139)
T COG1197 827 VPEARIAVAHGQMR---ERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQ 903 (1139)
T ss_pred CCceEEEEeecCCC---HHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccce
Confidence 667899999999 999999999999999999999999999999999998885543332222233 345544 5
Q ss_pred EEEEe
Q psy15269 1179 AIAFY 1183 (1858)
Q Consensus 1179 aitfv 1183 (1858)
|+.++
T Consensus 904 AYAYf 908 (1139)
T COG1197 904 AYAYF 908 (1139)
T ss_pred EEEEE
Confidence 55543
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00051 Score=88.24 Aligned_cols=254 Identities=12% Similarity=0.087 Sum_probs=155.3
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhh---hh-cccccccccccc-cCc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDID---KF-VRDMRHVSNNIL-MSP 944 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~---~~-v~~l~~t~~~ll-~~~ 944 (1858)
.+-|+.||--||-|--+.+..++.-..++ -.++.|.+--......++ .| +++++.|= -|+ |.-
T Consensus 313 Q~ALMAPTEILA~QH~~~~~~~l~~~~i~-----------V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH-ALiQd~V 380 (677)
T COG1200 313 QAALMAPTEILAEQHYESLRKWLEPLGIR-----------VALLTGSLKGKARKEILEQLASGEIDIVVGTH-ALIQDKV 380 (677)
T ss_pred eeEEeccHHHHHHHHHHHHHHHhhhcCCe-----------EEEeecccchhHHHHHHHHHhCCCCCEEEEcc-hhhhcce
Confidence 34678888888888877765555422221 255566655444444444 34 55666662 233 233
Q ss_pred cccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccc
Q psy15269 945 NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQH 1024 (1858)
Q Consensus 945 ~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~ 1024 (1858)
++. +..-+++||=-| | |.. .|..|.- ++. . ..|
T Consensus 381 ~F~---~LgLVIiDEQHR----F---------GV~----------------QR~~L~~----------KG~----~-~Ph 413 (677)
T COG1200 381 EFH---NLGLVIIDEQHR----F---------GVH----------------QRLALRE----------KGE----Q-NPH 413 (677)
T ss_pred eec---ceeEEEEecccc----c---------cHH----------------HHHHHHH----------hCC----C-CCc
Confidence 333 234566777655 4 211 1222221 000 0 223
Q ss_pred ccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHH-HHHHhh-cCCcEEEEecCh--------HH
Q psy15269 1025 NSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIV-NLLSFL-EGKRSLIFVKTY--------RD 1094 (1858)
Q Consensus 1025 ~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~-~Ll~lL-~~~k~IIFvnTk--------~~ 1094 (1858)
.-.-|||+=+..-.++.-.--|--.|.-.+.....|.-+.+..+..++.- .+..-+ ++.|+.+-|+-. +.
T Consensus 414 ~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~ 493 (677)
T COG1200 414 VLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQA 493 (677)
T ss_pred EEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhh
Confidence 33338888777766654333333333333444445666666554433322 222223 347787777533 35
Q ss_pred HHHHHHHHhh--CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhh
Q psy15269 1095 ASRIISAVQD--SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQ 1172 (1858)
Q Consensus 1095 ad~L~~~L~~--~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHR 1172 (1858)
|+.+++.|+. .++.+..+||.|+ ..+.+++|++||+|+++|||||-|..=|+|+|+.+.+|-+|.=+--=.=+|.
T Consensus 494 a~~~~~~L~~~~~~~~vgL~HGrm~---~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQ 570 (677)
T COG1200 494 AEELYEELKSFLPELKVGLVHGRMK---PAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQ 570 (677)
T ss_pred HHHHHHHHHHHcccceeEEEecCCC---hHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHH
Confidence 7788888885 3677999999999 9999999999999999999999999999999999999998865555556775
Q ss_pred c----cCcc---eEEEEecC
Q psy15269 1173 I----AGHK---EAIAFYDP 1185 (1858)
Q Consensus 1173 I----ag~~---~aitfvt~ 1185 (1858)
. |+-. .|+.++.+
T Consensus 571 LRGRVGRG~~qSyC~Ll~~~ 590 (677)
T COG1200 571 LRGRVGRGDLQSYCVLLYKP 590 (677)
T ss_pred hccccCCCCcceEEEEEeCC
Confidence 4 2222 67878776
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.6e-05 Score=88.11 Aligned_cols=125 Identities=17% Similarity=0.146 Sum_probs=84.2
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChh-hHH-----H-HHHHhhcC-----CcEEEEecChHHHH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKS-QKI-----V-NLLSFLEG-----KRSLIFVKTYRDAS 1096 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~-~Kl-----~-~Ll~lL~~-----~k~IIFvnTk~~ad 1096 (1858)
+||+|++.++-+...-..++.+...-.......=.++.+... .|+ . .|...|+. ..++||+++....+
T Consensus 240 TATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~e 319 (441)
T COG4098 240 TATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETME 319 (441)
T ss_pred ecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHH
Confidence 899998877654443333333222111122222223333322 222 1 45555542 67999999999999
Q ss_pred HHHHHHhh-CC-CeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEE
Q psy15269 1097 RIISAVQD-SN-MMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVI 1158 (1858)
Q Consensus 1097 ~L~~~L~~-~g-~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VI 1158 (1858)
.+++.|++ .. ....+.|+. -..|.+..+.||+|++.+||+|-+..||.-+|+|+.+|
T Consensus 320 q~a~~lk~~~~~~~i~~Vhs~-----d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~V 378 (441)
T COG4098 320 QVAAALKKKLPKETIASVHSE-----DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFV 378 (441)
T ss_pred HHHHHHHhhCCccceeeeecc-----CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEE
Confidence 99999954 33 345778875 35799999999999999999999999999999999655
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.001 Score=87.73 Aligned_cols=269 Identities=13% Similarity=0.098 Sum_probs=147.6
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccc-cCCc---hhhhhhhhh-cccccccccccccC
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAG-LEPS---TAIIDIDKF-VRDMRHVSNNILMS 943 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG-~~~~---~q~~dl~~~-v~~l~~t~~~ll~~ 943 (1858)
-.+.+|=||++|+-|...-+..|....- +. +..+++=| +... .-...+++| .|+++.|...+--
T Consensus 126 kr~yii~PT~~Lv~Q~~~kl~~~~e~~~-~~---------~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k- 194 (1187)
T COG1110 126 KRVYIIVPTTTLVRQVYERLKKFAEDAG-SL---------DVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSK- 194 (1187)
T ss_pred CeEEEEecCHHHHHHHHHHHHHHHhhcC-Cc---------ceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHh-
Confidence 4457888999999999888887764332 11 11111111 1111 122233332 5566666555442
Q ss_pred ccccccc-ccccee-ecccchhhhhh--HHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCC-----ccccc
Q psy15269 944 PNYESDV-NKYSVL-LKYIPQQYKNL--VYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPS-----FDDNN 1014 (1858)
Q Consensus 944 ~~~~~~~-~~~~~l-Ld~a~r~y~~~--~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s-----~~~~~ 1014 (1858)
+++.+. .+.+++ .|-||- +.+. ....+|+-.||..+. ++.-++. -+.|.++-........ ..+..
T Consensus 195 -~~e~L~~~kFdfifVDDVDA-~LkaskNvDriL~LlGf~eE~---i~~a~~~-~~lr~~~~~~~~~~~~~e~~~~~e~~ 268 (1187)
T COG1110 195 -RFEELSKLKFDFIFVDDVDA-ILKASKNVDRLLRLLGFSEEV---IESAYEL-IKLRRKLYGEKRAERVREELREVERE 268 (1187)
T ss_pred -hHHHhcccCCCEEEEccHHH-HHhccccHHHHHHHcCCCHHH---HHHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 222222 234444 677765 1111 124557778998872 2111111 1222222110000000 00000
Q ss_pred ccccccccccccCCCCCCcH-hHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhcCCcEEEEecC--
Q psy15269 1015 VSMGVTSTQHNSTDSLFSWG-DIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEGKRSLIFVKT-- 1091 (1858)
Q Consensus 1015 ~s~~~~~~~~~~~eSAT~p~-~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~~k~IIFvnT-- 1091 (1858)
..............|||-.+ ..+-..-+.|-+.. +.-.....-+|...|+..+..+|...|++.+.. -.|||+++
T Consensus 269 ~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFe-vG~~~~~LRNIvD~y~~~~~~e~~~elvk~lG~-GgLIfV~~d~ 346 (1187)
T COG1110 269 REKKRRKLGILVVSSATGKPRGSRLKLFRELLGFE-VGSGGEGLRNIVDIYVESESLEKVVELVKKLGD-GGLIFVPIDY 346 (1187)
T ss_pred HHHhccCCceEEEeeccCCCCCchHHHHHHHhCCc-cCccchhhhheeeeeccCccHHHHHHHHHHhCC-CeEEEEEcHH
Confidence 01111122222223666432 23322222222221 111122233466666666666777777776654 58999999
Q ss_pred -hHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEec----cccccCCCCCC-cceEEEcCCCC
Q psy15269 1092 -YRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMT----LSDFIGNDFTN-VEQVIIYNLPL 1164 (1858)
Q Consensus 1092 -k~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVAT----DVAARGLDIp~-V~~VINyDlP~ 1164 (1858)
++.++++++.|+..|+++..+|... .+.+++|..|++++||.. .++.||||.|. +.++|=|++|.
T Consensus 347 G~e~aeel~e~Lr~~Gi~a~~~~a~~--------~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 347 GREKAEELAEYLRSHGINAELIHAEK--------EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred hHHHHHHHHHHHHhcCceEEEeeccc--------hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 9999999999999999999999843 578999999999999875 47889999986 67999999995
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00058 Score=92.40 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=108.3
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcc-cEEEEEEECC---------hhhHHH---HHHHhh--cCCcEEEEecChH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVH-LVKQYLIRTP---------KSQKIV---NLLSFL--EGKRSLIFVKTYR 1093 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~-~I~Q~~~~v~---------~~~Kl~---~Ll~lL--~~~k~IIFvnTk~ 1093 (1858)
|||.-. ..++++++...+....+...... ..+..+..-+ ...+.. .+...+ ..-++|+|+.+++
T Consensus 239 SAT~~n-p~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~ 317 (851)
T COG1205 239 SATLAN-PGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRK 317 (851)
T ss_pred eccccC-hHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhh
Confidence 666433 34455566655555434433322 2444444433 113332 333222 3479999999999
Q ss_pred HHHHHH----HHHhhCC----CeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCC-
Q psy15269 1094 DASRII----SAVQDSN----MMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPL- 1164 (1858)
Q Consensus 1094 ~ad~L~----~~L~~~g----~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~- 1164 (1858)
.++.++ +.+...+ ..+...+|++. ..+|.++..+|++|+..++++|..+.=||||.+++.||++..|.
T Consensus 318 ~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~---~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~ 394 (851)
T COG1205 318 QVELLYLSPRRRLVREGGKLLDAVSTYRAGLH---REERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGV 394 (851)
T ss_pred hhhhhhhchhHHHhhcchhhhhheeeccccCC---HHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCc
Confidence 999997 4454555 56888999998 99999999999999999999999999999999999999999999
Q ss_pred Chhhhhhhc---cCcc-eEEEEec
Q psy15269 1165 SINHYVFQI---AGHK-EAIAFYD 1184 (1858)
Q Consensus 1165 ~~e~YIHRI---ag~~-~aitfvt 1184 (1858)
+..+|.+|. ++++ .++.++.
T Consensus 395 s~~~~~Q~~GRaGR~~~~~l~~~v 418 (851)
T COG1205 395 SVLSFRQRAGRAGRRGQESLVLVV 418 (851)
T ss_pred hHHHHHHhhhhccCCCCCceEEEE
Confidence 789999998 3333 4555544
|
|
| >KOG2243|consensus | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00035 Score=90.03 Aligned_cols=124 Identities=20% Similarity=0.338 Sum_probs=0.0
Q ss_pred EEEecCCCCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeeccc-cCCCCCCCceeEEEeCCceeeeCCCCCccC
Q psy15269 1430 SLIHGPGTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR-DYNHRTTGDMWLYRAYSGNVYHSGEQTTML 1508 (1858)
Q Consensus 1430 ~~~~~~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~~-~~~~~~~~~~W~y~~~~g~~~h~~~~~~~~ 1508 (1858)
..+-.+.-.|+-.+-..+.--..-|+|+.+..+.|+. -||-+|-.-+ |+-+|.|+..+.|.+..+.-+|.| +..++
T Consensus 1084 ~~sgt~dk~r~fr~eksyavkagkwyfefe~vt~gdm--rvgwarpgc~pd~elgadd~af~fdg~k~qrwhqg-~~~~g 1160 (5019)
T KOG2243|consen 1084 KCSGTGDKFRFFRAEKSYAVKAGKWYFEFETVTAGDM--RVGWARPGCQPDQELGADDQAFAFDGFKAQRWHQG-NEHFG 1160 (5019)
T ss_pred HhcCCcceeEEEeeehhheeeccceEEEEEEeeccce--eecccCCCCCcchhhCCccceeeeccchhhhhhcc-ccccc
Q ss_pred CCcCCCCEEEEEEeccCceEEEEeCCc----ccc--ccccCCCCCCceeEEEEE
Q psy15269 1509 PSFTQGDYITVVLDMDAQTLSFGKNGE----EPH--LAFQDLDTSAPLYPIVLF 1556 (1858)
Q Consensus 1509 ~~~~~gd~i~v~lDm~~~tl~f~~ng~----~~G--vAF~~l~~~~~lyP~Vs~ 1556 (1858)
.+.++||+|||++||++.++-|+.||+ .-| +||.+.+-+..|.|+-++
T Consensus 1161 rswq~gdvvgcmi~l~d~sm~ftlngeili~~~gselaf~d~di~~gfipic~l 1214 (5019)
T KOG2243|consen 1161 RSWQAGDVVGCMIDLDDASMIFTLNGEILIDDKGSELAFADFDIEDGFIPICCL 1214 (5019)
T ss_pred cccCCCCeEEEEEecccceEEEEEcCeEEEcCCCCeeeeccccccCCceeeeeh
|
|
| >KOG1477|consensus | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00073 Score=85.49 Aligned_cols=153 Identities=21% Similarity=0.125 Sum_probs=119.3
Q ss_pred EecCCCceE--EEEecCCeEEEecC-----CCCceEEecccccCceEEEEEEEEeecCCCcc-eEEEEEeeccc-cCCCC
Q psy15269 1413 SFDKEKCVC--CTVECGGQSLIHGP-----GTRGYGVANIGITRGCYQWKFLIVNEHKGNEG-TCIGVTRWPIR-DYNHR 1483 (1858)
Q Consensus 1413 ~~D~~~~~~--~~~~~~~~~~~~~~-----~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~-~~vGva~~~~~-~~~~~ 1483 (1858)
.||+--..+ -....|.-+.-... .+.++.-++...+.-+...+|++...+.+.++ +.||....... +...|
T Consensus 33 ~~~~~~~~~~~~~~~~~~gi~f~~~~~~~~~dvg~~~~~~~~~~N~~~~~Fe~~i~d~g~~~~i~i~~~~~~~~~~~~~g 112 (469)
T KOG1477|consen 33 EVNTINGSDFFTKNGPDMGIAFYTPPALLYHDVGVVQAGEPLPANFGIYYFEFDILDYGIEGRIKIGFLIDSFSIIESEG 112 (469)
T ss_pred eEeccCCceeEEEEcCCcceeeecCccccCCCcceeeCCCCCCcccccceeeeeHHHhhhhhceEEEEEecccccccccc
Confidence 556555555 33444443333332 46777888999999988888888888888885 88999888888 88999
Q ss_pred CCCceeEEEeCCceeee-CCCC-CccCCCcCCCCEEEEEEeccCceEEEEeCCccccccccCCCCCCceeEE-----EEE
Q psy15269 1484 TTGDMWLYRAYSGNVYH-SGEQ-TTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPI-----VLF 1556 (1858)
Q Consensus 1484 ~~~~~W~y~~~~g~~~h-~~~~-~~~~~~~~~gd~i~v~lDm~~~tl~f~~ng~~~GvAF~~l~~~~~lyP~-----Vs~ 1556 (1858)
+..++|+|++.+|.+|| ..+. .++.|+|+.||.|+|=.+-....+.|++||...|.+|+.+... +||= +.|
T Consensus 113 ~~~~s~~y~g~~g~l~~~~~~~~~~~~~~~~~~D~ig~~~~~~~q~i~~t~~g~~~~~~~~~~~~~--~~~~~~n~~~~~ 190 (469)
T KOG1477|consen 113 YTMNSLGYHGNSGLLDNGGAELGEEFGPTFTTGDEIGCGINEITQEIFFTKNGTEVGEIIKPLSPD--LLEENGNLAWLF 190 (469)
T ss_pred hhhhhhcccCCchhhhhhhhhhchhhcCCCCccceeeeccchhhheeeeccCcccccccccccccc--ccccccceeeEe
Confidence 88889999999999999 5555 9999999999999999999999999999999999999999876 4443 333
Q ss_pred eecCCCCCeEEEEEe
Q psy15269 1557 YSTNANGEKVKITDM 1571 (1858)
Q Consensus 1557 y~~~~~~~~v~~~~~ 1571 (1858)
.+ ||.|.+.--
T Consensus 191 ---s~-~~~I~~~~g 201 (469)
T KOG1477|consen 191 ---SP-NEEVEVNFG 201 (469)
T ss_pred ---cc-Cceeeeeec
Confidence 33 666665544
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.052 Score=73.14 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=77.4
Q ss_pred ChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCC-CcEEEe
Q psy15269 1068 PKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGK-SSLVIM 1141 (1858)
Q Consensus 1068 ~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~-~~ILVA 1141 (1858)
...+|..+++.-+. +..++|-|.+....+.++..|.+.|++...|+..- .+++..+-. +.|+ -.|-||
T Consensus 549 t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~-----~~~Ea~iia-~AG~~g~VTIA 622 (970)
T PRK12899 549 TEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKN-----HAQEAEIIA-GAGKLGAVTVA 622 (970)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccch-----hhhHHHHHH-hcCCCCcEEEe
Confidence 34556666655442 26699999999999999999999999998888863 344433322 3444 468999
Q ss_pred ccccccCCCCCCc--------ceEEEcCCCCChh---hhhhhccCcc---eEEEEecC
Q psy15269 1142 TLSDFIGNDFTNV--------EQVIIYNLPLSIN---HYVFQIAGHK---EAIAFYDP 1185 (1858)
Q Consensus 1142 TDVAARGLDIp~V--------~~VINyDlP~~~e---~YIHRIag~~---~aitfvt~ 1185 (1858)
|+.|+||-||.-- =|||--..|.+.- .-.-|.|++| .+.-|++-
T Consensus 623 TNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSl 680 (970)
T PRK12899 623 TNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSF 680 (970)
T ss_pred eccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEc
Confidence 9999999998432 2888877777652 2222445555 56666665
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0005 Score=77.41 Aligned_cols=131 Identities=14% Similarity=0.120 Sum_probs=100.2
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~ 946 (1858)
..++++-|+++|+.|+...+..+....+ ++...+.||..+......++...++++.||..+++ ....
T Consensus 70 ~~viii~p~~~L~~q~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~ 138 (203)
T cd00268 70 PQALILAPTRELALQIAEVARKLGKHTN-----------LKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK 138 (203)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHhccCC-----------ceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC
Confidence 3468999999999999888776655432 34466788887766666666567789999988775 2222
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNS 1026 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~ 1026 (1858)
.........++||++. +.+.+|... +.++++.+++.+|.+.+
T Consensus 139 ~~~~~l~~lIvDE~h~----------~~~~~~~~~----~~~~~~~l~~~~~~~~~------------------------ 180 (203)
T cd00268 139 LDLSKVKYLVLDEADR----------MLDMGFEDQ----IREILKLLPKDRQTLLF------------------------ 180 (203)
T ss_pred CChhhCCEEEEeChHH----------hhccChHHH----HHHHHHhCCcccEEEEE------------------------
Confidence 3333445566777766 667788888 99999999888888888
Q ss_pred CCCCCCcHhHHHHHHHhcCCCEEE
Q psy15269 1027 TDSLFSWGDIEEESNIEVEDPIMK 1050 (1858)
Q Consensus 1027 ~eSAT~p~~I~~la~~~L~dpv~I 1050 (1858)
|||+++.+.++++.++++|+.|
T Consensus 181 --SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 181 --SATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred --eccCCHHHHHHHHHHCCCCEEe
Confidence 9999999999999999999886
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >KOG0391|consensus | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.011 Score=78.47 Aligned_cols=123 Identities=17% Similarity=0.246 Sum_probs=104.6
Q ss_pred EEEEEEECChhhHHHHHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC-CC
Q psy15269 1060 VKQYLIRTPKSQKIVNLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG-KS 1136 (1858)
Q Consensus 1060 I~Q~~~~v~~~~Kl~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G-~~ 1136 (1858)
++-.-|.|.|-+++..|++-|+. .|++||+.-.+..|-|-.+|..+|+--..|-|.-+ -++|...+++|... ++
T Consensus 1252 lrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~---vEqRQaLmerFNaD~RI 1328 (1958)
T KOG0391|consen 1252 LRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTS---VEQRQALMERFNADRRI 1328 (1958)
T ss_pred hheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCcc---HHHHHHHHHHhcCCCce
Confidence 34444578899999999998875 79999999999999999999999999999999998 89999999999653 33
Q ss_pred -cEEEeccccccCCCCCCcceEEEcCCCCCh------hhhhhhccCcc-eEE-EEecC
Q psy15269 1137 -SLVIMTLSDFIGNDFTNVEQVIIYNLPLSI------NHYVFQIAGHK-EAI-AFYDP 1185 (1858)
Q Consensus 1137 -~ILVATDVAARGLDIp~V~~VINyDlP~~~------e~YIHRIag~~-~ai-tfvt~ 1185 (1858)
..++.|-...-||++.+.+.||=||--+++ .+..||||... +.| -|+..
T Consensus 1329 fcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe 1386 (1958)
T KOG0391|consen 1329 FCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISE 1386 (1958)
T ss_pred EEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeecc
Confidence 347899999999999999999999998886 89999998777 444 45543
|
|
| >KOG1002|consensus | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0043 Score=76.16 Aligned_cols=114 Identities=12% Similarity=0.140 Sum_probs=93.4
Q ss_pred hhhHHHHHHHhhc---C----CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC-CCcE-E
Q psy15269 1069 KSQKIVNLLSFLE---G----KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG-KSSL-V 1139 (1858)
Q Consensus 1069 ~~~Kl~~Ll~lL~---~----~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G-~~~I-L 1139 (1858)
...|+++|..-|. . -|.|||..=....+.+.-.|.+.|+.++-+-|+|+ +.+|..+++.|++. .++| |
T Consensus 618 sSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs---~~ardatik~F~nd~~c~vfL 694 (791)
T KOG1002|consen 618 SSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMS---PAARDATIKYFKNDIDCRVFL 694 (791)
T ss_pred chhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCC---hHHHHHHHHHhccCCCeEEEE
Confidence 4567777766442 2 67999998888999999999999999999999999 99999999999874 4555 4
Q ss_pred EeccccccCCCCCCcceEEEcCCCCCh------hhhhhhccCcc--eEEEEecC
Q psy15269 1140 IMTLSDFIGNDFTNVEQVIIYNLPLSI------NHYVFQIAGHK--EAIAFYDP 1185 (1858)
Q Consensus 1140 VATDVAARGLDIp~V~~VINyDlP~~~------e~YIHRIag~~--~aitfvt~ 1185 (1858)
|.--..+-.|+....++|+-.|+=+++ .+-|||||... ..+.|+..
T Consensus 695 vSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE 748 (791)
T KOG1002|consen 695 VSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIE 748 (791)
T ss_pred EEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehh
Confidence 555555556899999999999987776 78999997766 77888765
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0058 Score=82.31 Aligned_cols=139 Identities=13% Similarity=0.048 Sum_probs=98.7
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccC-----CcccEEEEEE-ECChh---hHHHHHHHhhc-CCcEEEEecChHHHHHH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPS-----SVHLVKQYLI-RTPKS---QKIVNLLSFLE-GKRSLIFVKTYRDASRI 1098 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~-----~~~~I~Q~~~-~v~~~---~Kl~~Ll~lL~-~~k~IIFvnTk~~ad~L 1098 (1858)
|||+|+..++..+..+.+...+..... ....+.+... .+... +........++ +.+++|-|||.+.|.++
T Consensus 377 SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~ 456 (733)
T COG1203 377 SATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIEL 456 (733)
T ss_pred ecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHH
Confidence 999999999988888766655544311 1112222211 11111 22333333333 38899999999999999
Q ss_pred HHHHhhCCCeEEEEecCCCCccHHHHHHHHHHH----hcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc
Q psy15269 1099 ISAVQDSNMMTIPMSNNGTSWSHVECLELLNLF----NTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1099 ~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~F----r~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI 1173 (1858)
++.|+..+.++..+||.+. ...|.+.++.. +.+...|+|||-|..=|+||. .+.+|== +.-+++-|||.
T Consensus 457 Y~~Lk~~~~~v~LlHSRf~---~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe--~aPidSLIQR~ 529 (733)
T COG1203 457 YEKLKEKGPKVLLLHSRFT---LKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITE--LAPIDSLIQRA 529 (733)
T ss_pred HHHHHhcCCCEEEEecccc---hhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeec--CCCHHHHHHHH
Confidence 9999998878999999999 88888888864 456888999999999999997 6776632 44457778876
|
|
| >KOG0385|consensus | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.011 Score=76.28 Aligned_cols=143 Identities=17% Similarity=0.170 Sum_probs=114.6
Q ss_pred HHHhcCCCEEEE-Ecc-CCcccEEEEEEECChhhHHHHHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecC
Q psy15269 1040 SNIEVEDPIMKL-VKP-SSVHLVKQYLIRTPKSQKIVNLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNN 1115 (1858)
Q Consensus 1040 a~~~L~dpv~I~-v~~-~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ 1115 (1858)
.++..+.|.... +.+ ..-+..+|.+....+..-++.|+..|+. .|++||..--+..|-|-.++.-.+|....|-|.
T Consensus 441 LRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGS 520 (971)
T KOG0385|consen 441 LRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGS 520 (971)
T ss_pred HHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCC
Confidence 455566776543 333 2223345555555666677888777754 899999998899999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHhcC---CCcEEEeccccccCCCCCCcceEEEcCCCCCh------hhhhhhccCcc--eEEEEec
Q psy15269 1116 GTSWSHVECLELLNLFNTG---KSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSI------NHYVFQIAGHK--EAIAFYD 1184 (1858)
Q Consensus 1116 ms~~~Q~eR~~~L~~Fr~G---~~~ILVATDVAARGLDIp~V~~VINyDlP~~~------e~YIHRIag~~--~aitfvt 1184 (1858)
.+ .++|..+++.|... ++-.|++|-+++-||+....+.||=||--++| .+--||||.++ .++-|++
T Consensus 521 t~---~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLit 597 (971)
T KOG0385|consen 521 TS---HEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLIT 597 (971)
T ss_pred CC---cHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEec
Confidence 99 99999999999654 34469999999999999999999999999987 67889998877 7888888
Q ss_pred C
Q psy15269 1185 P 1185 (1858)
Q Consensus 1185 ~ 1185 (1858)
.
T Consensus 598 e 598 (971)
T KOG0385|consen 598 E 598 (971)
T ss_pred c
Confidence 5
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.025 Score=71.17 Aligned_cols=232 Identities=16% Similarity=0.224 Sum_probs=157.1
Q ss_pred ccccccccccc--------CccccccccccceeecccchhhhhhHH------hhhhhhcCCCchh--hHHHHHHHHH-h-
Q psy15269 932 DMRHVSNNILM--------SPNYESDVNKYSVLLKYIPQQYKNLVY------SYLIQQTALSPRE--KTVLEQIFSV-V- 993 (1858)
Q Consensus 932 ~l~~t~~~ll~--------~~~~~~~~~~~~~lLd~a~r~y~~~~~------A~lL~~mGF~~~~--~esL~~Il~~-L- 993 (1858)
+++|.|=.|=+ ..+++.+++.+-+++|.||= +-. -..+.++-.+|.. .-++..|..- |
T Consensus 134 IIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~----l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 134 IIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADV----LLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred EEEEChHHHHHHhccccccccccchhheeeeEeechhhH----HHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 67777744432 45688888888899999864 211 2334444444421 1123333221 1
Q ss_pred ---HHHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCE-EEEEcc--C-------CcccE
Q psy15269 994 ---NKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPI-MKLVKP--S-------SVHLV 1060 (1858)
Q Consensus 994 ---pk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv-~I~v~~--~-------~~~~I 1060 (1858)
...|||++| |+...+++..+.+..+.|.. .+.+.. . -...|
T Consensus 210 g~a~~~RQtii~--------------------------S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v 263 (442)
T PF06862_consen 210 GQAKYYRQTIIF--------------------------SSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQV 263 (442)
T ss_pred CcchheeEeEEe--------------------------cCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCC
Confidence 345777777 99999999999999887763 222221 1 11237
Q ss_pred EEEEEECC-------hhhHHHHHHH----hhc-C---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHH
Q psy15269 1061 KQYLIRTP-------KSQKIVNLLS----FLE-G---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECL 1125 (1858)
Q Consensus 1061 ~Q~~~~v~-------~~~Kl~~Ll~----lL~-~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~ 1125 (1858)
+|.+...+ ...+++.... -+. . .+++||+++--.=-++-..|++.++....+|.-.+ +.+-.
T Consensus 264 ~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts---~~~is 340 (442)
T PF06862_consen 264 RQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTS---NSDIS 340 (442)
T ss_pred ceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCC---HHHHH
Confidence 88887643 1223332222 222 2 78999999999999999999999999999999988 89988
Q ss_pred HHHHHHhcCCCcEEEeccccc--cCCCCCCcceEEEcCCCCChhhhhhhc-----cC-------cceEEEEecCcccHHH
Q psy15269 1126 ELLNLFNTGKSSLVIMTLSDF--IGNDFTNVEQVIIYNLPLSINHYVFQI-----AG-------HKEAIAFYDPVADIGL 1191 (1858)
Q Consensus 1126 ~~L~~Fr~G~~~ILVATDVAA--RGLDIp~V~~VINyDlP~~~e~YIHRI-----ag-------~~~aitfvt~~~e~~~ 1191 (1858)
++-..|.+|+.+||+-|.=+- |=..|.+|.+||=|.+|..++-|-.=+ .. ...++.+++. -|.-
T Consensus 341 RAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk-~D~~- 418 (442)
T PF06862_consen 341 RARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK-YDAL- 418 (442)
T ss_pred HHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH-hHHH-
Confidence 999999999999999998443 445678899999999999998887755 11 1267788887 4433
Q ss_pred HHHHHHHHh
Q psy15269 1192 ASSLIKLLE 1200 (1858)
Q Consensus 1192 l~~Ie~~l~ 1200 (1858)
+||+..+
T Consensus 419 --~LErIVG 425 (442)
T PF06862_consen 419 --RLERIVG 425 (442)
T ss_pred --HHHHHhC
Confidence 3444443
|
; GO: 0005634 nucleus |
| >KOG0384|consensus | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0099 Score=79.99 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=95.9
Q ss_pred HHHHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhc---CCCcEEEecccccc
Q psy15269 1073 IVNLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNT---GKSSLVIMTLSDFI 1147 (1858)
Q Consensus 1073 l~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~---G~~~ILVATDVAAR 1147 (1858)
++.|+--|+. .|++||..-.+..|-|+++|...+|+...|-|.+. -..|..+|+.|.+ ..+-.|.+|-+.+=
T Consensus 688 LDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvr---gelRq~AIDhFnap~SddFvFLLSTRAGGL 764 (1373)
T KOG0384|consen 688 LDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVR---GELRQQAIDHFNAPDSDDFVFLLSTRAGGL 764 (1373)
T ss_pred HHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcc---hHHHHHHHHhccCCCCCceEEEEecccCcc
Confidence 4455544443 79999999999999999999999999999999998 9999999999965 45668999999999
Q ss_pred CCCCCCcceEEEcCCCCCh------hhhhhhccCcc--eEEEEecC
Q psy15269 1148 GNDFTNVEQVIIYNLPLSI------NHYVFQIAGHK--EAIAFYDP 1185 (1858)
Q Consensus 1148 GLDIp~V~~VINyDlP~~~------e~YIHRIag~~--~aitfvt~ 1185 (1858)
||+....+.||-||--++| ..--||||.+. ..+=||+.
T Consensus 765 GINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk 810 (1373)
T KOG0384|consen 765 GINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTK 810 (1373)
T ss_pred cccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecC
Confidence 9999999999999999988 56789998777 67778885
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.021 Score=78.01 Aligned_cols=99 Identities=12% Similarity=0.183 Sum_probs=87.9
Q ss_pred cEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC--CCcEEEeccccccCCCCCCcceEEEcC
Q psy15269 1084 RSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG--KSSLVIMTLSDFIGNDFTNVEQVIIYN 1161 (1858)
Q Consensus 1084 k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G--~~~ILVATDVAARGLDIp~V~~VINyD 1161 (1858)
+++||++-....+-+...|+..++....++|.++ .++|...+++|.++ ..-+++.|-++.-||+....++||.||
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~---~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d 789 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTP---AKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFD 789 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCC---hhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEec
Confidence 8999999999999999999999999999999998 99999999999986 444678888999999999999999999
Q ss_pred CCCCh------hhhhhhccCcc--eEEEEecC
Q psy15269 1162 LPLSI------NHYVFQIAGHK--EAIAFYDP 1185 (1858)
Q Consensus 1162 lP~~~------e~YIHRIag~~--~aitfvt~ 1185 (1858)
..+++ .+..||||.+. ..+-|++.
T Consensus 790 ~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~ 821 (866)
T COG0553 790 PWWNPAVELQAIDRAHRIGQKRPVKVYRLITR 821 (866)
T ss_pred cccChHHHHHHHHHHHHhcCcceeEEEEeecC
Confidence 99998 66777886666 67777776
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0081 Score=82.33 Aligned_cols=76 Identities=17% Similarity=0.303 Sum_probs=61.5
Q ss_pred CcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcc--e
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVE--Q 1156 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~--~ 1156 (1858)
++++||+++.+..+.+++.|.. .++++ +..+. ...|.+++++|++++..||++|+.++||+|+++.. .
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~----~~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~ 748 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGI----NGSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVC 748 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCC----CccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEE
Confidence 7899999999999999999975 34443 33333 24789999999999999999999999999999887 4
Q ss_pred EEEcCCCC
Q psy15269 1157 VIIYNLPL 1164 (1858)
Q Consensus 1157 VINyDlP~ 1164 (1858)
||-.-+|.
T Consensus 749 viI~~LPf 756 (850)
T TIGR01407 749 LVIPRLPF 756 (850)
T ss_pred EEEeCCCC
Confidence 55566664
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >KOG0389|consensus | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.036 Score=72.11 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=96.9
Q ss_pred ChhhHHHHHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC-CCc-EEEecc
Q psy15269 1068 PKSQKIVNLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG-KSS-LVIMTL 1143 (1858)
Q Consensus 1068 ~~~~Kl~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G-~~~-ILVATD 1143 (1858)
.|-.++..|+.-++. .|++||..=-...|-|-..|.-.++....|-|.-. -..|...+++|... .+. .|..|-
T Consensus 761 gK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTq---V~~RQ~lId~Fn~d~difVFLLSTK 837 (941)
T KOG0389|consen 761 GKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQ---VNDRQDLIDEFNTDKDIFVFLLSTK 837 (941)
T ss_pred hhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCcc---chHHHHHHHhhccCCceEEEEEeec
Confidence 344556666655543 89999998888899999999999999999999886 78999999999654 333 489999
Q ss_pred ccccCCCCCCcceEEEcCCCCCh------hhhhhhccCcc--eEEEEecC
Q psy15269 1144 SDFIGNDFTNVEQVIIYNLPLSI------NHYVFQIAGHK--EAIAFYDP 1185 (1858)
Q Consensus 1144 VAARGLDIp~V~~VINyDlP~~~------e~YIHRIag~~--~aitfvt~ 1185 (1858)
+.+-||+....++||-||+-.+| |+-.||+|..+ +.+.|++.
T Consensus 838 AGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk 887 (941)
T KOG0389|consen 838 AGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITK 887 (941)
T ss_pred cCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEec
Confidence 99999999999999999998776 99999998777 67778886
|
|
| >KOG0953|consensus | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.12 Score=65.30 Aligned_cols=79 Identities=14% Similarity=0.221 Sum_probs=66.1
Q ss_pred hcCCcEEEEecChHHHHHHHHHHhhCCCe-EEEEecCCCCccHHHHHHHHHHHhc--CCCcEEEeccccccCCCCCCcce
Q psy15269 1080 LEGKRSLIFVKTYRDASRIISAVQDSNMM-TIPMSNNGTSWSHVECLELLNLFNT--GKSSLVIMTLSDFIGNDFTNVEQ 1156 (1858)
Q Consensus 1080 L~~~k~IIFvnTk~~ad~L~~~L~~~g~~-~~~LHG~ms~~~Q~eR~~~L~~Fr~--G~~~ILVATDVAARGLDIp~V~~ 1156 (1858)
++.+-+||=. +|+..-.+...+++.|.. +..|+|+++ ++.|.+--..|.+ ++.+||||||+...||+. +++-
T Consensus 355 lk~GDCvV~F-Skk~I~~~k~kIE~~g~~k~aVIYGsLP---PeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrR 429 (700)
T KOG0953|consen 355 LKPGDCVVAF-SKKDIFTVKKKIEKAGNHKCAVIYGSLP---PETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRR 429 (700)
T ss_pred CCCCCeEEEe-ehhhHHHHHHHHHHhcCcceEEEecCCC---CchhHHHHHHhCCCCCccceEEeeccccccccc-ceeE
Confidence 3345566644 577788899999988776 999999999 9999999999976 999999999999999997 5777
Q ss_pred EEEcCCC
Q psy15269 1157 VIIYNLP 1163 (1858)
Q Consensus 1157 VINyDlP 1163 (1858)
||=|++-
T Consensus 430 iiF~sl~ 436 (700)
T KOG0953|consen 430 IIFYSLI 436 (700)
T ss_pred EEEeecc
Confidence 8877775
|
|
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.025 Score=76.08 Aligned_cols=100 Identities=12% Similarity=0.146 Sum_probs=84.9
Q ss_pred CcEEEEecChHHHHHHHHHHhhCCCe-EE--EEecCCCCccHHHHHHHHHHHhcC-CCcE-EEeccccccCCCCCCcceE
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSNMM-TI--PMSNNGTSWSHVECLELLNLFNTG-KSSL-VIMTLSDFIGNDFTNVEQV 1157 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g~~-~~--~LHG~ms~~~Q~eR~~~L~~Fr~G-~~~I-LVATDVAARGLDIp~V~~V 1157 (1858)
.|++|||+-|...+.+-+-|.+.-++ +. .+-|..+ +.+|.++.++|.++ .+.+ |.+|-|.+-||+..+.+.|
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVp---p~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTV 1417 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVP---PGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTV 1417 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCC---cHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceE
Confidence 47999999999999999998875443 33 5788887 99999999999998 7777 5899999999999999999
Q ss_pred EEcCCCCCh------hhhhhhccCcc--eEEEEecC
Q psy15269 1158 IIYNLPLSI------NHYVFQIAGHK--EAIAFYDP 1185 (1858)
Q Consensus 1158 INyDlP~~~------e~YIHRIag~~--~aitfvt~ 1185 (1858)
|=++--|+| -+--||||.++ ..+-|++.
T Consensus 1418 VFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItr 1453 (1549)
T KOG0392|consen 1418 VFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITR 1453 (1549)
T ss_pred EEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhc
Confidence 999988887 67889998777 45667765
|
|
| >KOG0390|consensus | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.032 Score=73.89 Aligned_cols=131 Identities=11% Similarity=0.085 Sum_probs=92.0
Q ss_pred EEECChhhHHHHHHHhhcC--CcEEE----EecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCC-
Q psy15269 1064 LIRTPKSQKIVNLLSFLEG--KRSLI----FVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKS- 1136 (1858)
Q Consensus 1064 ~~~v~~~~Kl~~Ll~lL~~--~k~II----FvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~- 1136 (1858)
.....+..|+..|..++.. .++.+ -.|.+..-+.+....+-.|+.+..|||+|+ +.+|.++++.|.+-..
T Consensus 571 ~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~---~~qRq~~vd~FN~p~~~ 647 (776)
T KOG0390|consen 571 AGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTS---IKQRQKLVDTFNDPESP 647 (776)
T ss_pred cccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCc---hHHHHHHHHhccCCCCC
Confidence 3334456777777777632 33333 346666666666666668999999999999 9999999999966332
Q ss_pred -c-EEEeccccccCCCCCCcceEEEcCCCCChhhh---hhhc---cCcc--eEEEEecCc--ccHHHHHHHHH
Q psy15269 1137 -S-LVIMTLSDFIGNDFTNVEQVIIYNLPLSINHY---VFQI---AGHK--EAIAFYDPV--ADIGLASSLIK 1197 (1858)
Q Consensus 1137 -~-ILVATDVAARGLDIp~V~~VINyDlP~~~e~Y---IHRI---ag~~--~aitfvt~~--~e~~~l~~Ie~ 1197 (1858)
. .|..|=+.+.||..-+.+.||-||..++|..= +-|+ |.++ ..+.|++.. +|..+-++..+
T Consensus 648 ~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K 720 (776)
T KOG0390|consen 648 SFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHK 720 (776)
T ss_pred ceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHh
Confidence 3 57888889999999999999999999999433 3344 5555 566777642 34444444433
|
|
| >KOG4150|consensus | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.034 Score=69.36 Aligned_cols=120 Identities=19% Similarity=0.196 Sum_probs=90.3
Q ss_pred CCcEEEEecChHHHHHHHHHHhhC----CC----eEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDS----NM----MTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTN 1153 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~----g~----~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~ 1153 (1858)
+-++|.||..++-|+.+...-+.. |- .+..+.|+-+ .++|.++-.+.-.|+..-+|||+...-||||..
T Consensus 525 ~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~---A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~ 601 (1034)
T KOG4150|consen 525 GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYI---AEDRRKIESDLFGGKLCGIIATNALELGIDIGH 601 (1034)
T ss_pred CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccc---hhhHHHHHHHhhCCeeeEEEecchhhhcccccc
Confidence 478999999999988876655532 21 3567789988 999999999988899999999999999999999
Q ss_pred cceEEEcCCCCChhhhhhhc--cCcc--eEEEE----ecCcccHHHHHHHHHHHhhcCCC
Q psy15269 1154 VEQVIIYNLPLSINHYVFQI--AGHK--EAIAF----YDPVADIGLASSLIKLLEYSNKH 1205 (1858)
Q Consensus 1154 V~~VINyDlP~~~e~YIHRI--ag~~--~aitf----vt~~~e~~~l~~Ie~~l~~~~q~ 1205 (1858)
++.|+...+|.+...+-+.. ||+. -+.++ ..| -|..++..=+.++...+.+
T Consensus 602 LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~P-VDQ~Y~~HP~~l~~~pN~E 660 (1034)
T KOG4150|consen 602 LDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGP-VDQYYMSHPDKLFGSPNEE 660 (1034)
T ss_pred ceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccc-hhhHhhcCcHHHhCCCcce
Confidence 99999999999999998877 3332 23333 334 4445555555555444333
|
|
| >KOG0387|consensus | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.052 Score=70.75 Aligned_cols=125 Identities=18% Similarity=0.216 Sum_probs=98.3
Q ss_pred hhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHh-hCCCeEEEEecCCCCccHHHHHHHHHHHhcCCC-c-EEEe
Q psy15269 1070 SQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQ-DSNMMTIPMSNNGTSWSHVECLELLNLFNTGKS-S-LVIM 1141 (1858)
Q Consensus 1070 ~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~-~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~-~-ILVA 1141 (1858)
.-|+..+..++. +.++++|..|+...+.|-.+|. ..||....|-|.-+ -..|...+++|.++.. . .|++
T Consensus 529 sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~---~~~R~~lVd~Fne~~s~~VFLLT 605 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTP---AALRQKLVDRFNEDESIFVFLLT 605 (923)
T ss_pred cchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCc---cchhhHHHHhhcCCCceEEEEEE
Confidence 345555555554 3899999999999999999999 58999999999998 9999999999987654 3 4899
Q ss_pred ccccccCCCCCCcceEEEcCCCCChhhhhh------hccCcc--eEEEEecCc--ccHHHHHHHHH
Q psy15269 1142 TLSDFIGNDFTNVEQVIIYNLPLSINHYVF------QIAGHK--EAIAFYDPV--ADIGLASSLIK 1197 (1858)
Q Consensus 1142 TDVAARGLDIp~V~~VINyDlP~~~e~YIH------RIag~~--~aitfvt~~--~e~~~l~~Ie~ 1197 (1858)
|-|..-|++....+-||-||+-|+|.+=.| |+|.++ ..+=|++.. +|.-+-++|-+
T Consensus 606 TrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~K 671 (923)
T KOG0387|consen 606 TRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFK 671 (923)
T ss_pred ecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHH
Confidence 999999999999999999999999854443 456655 455566642 34455555544
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.26 Score=66.13 Aligned_cols=115 Identities=17% Similarity=0.091 Sum_probs=84.0
Q ss_pred EECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC-CCcE
Q psy15269 1065 IRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG-KSSL 1138 (1858)
Q Consensus 1065 ~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G-~~~I 1138 (1858)
++....+|..+++.-+. +..++|.|.+....+.|+..|.+.|++...|+..- .+|+..+-. +.| .-.|
T Consensus 404 iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~-----~e~EA~IIa-~AG~~GaV 477 (925)
T PRK12903 404 IFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQ-----NAREAEIIA-KAGQKGAI 477 (925)
T ss_pred EEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccc-----hhhHHHHHH-hCCCCCeE
Confidence 45567788888777554 26899999999999999999999999999998853 445544443 556 4568
Q ss_pred EEeccccccCCCCCCcc--------eEEEcCCCCCh---hhhhhhccCcc---eEEEEecC
Q psy15269 1139 VIMTLSDFIGNDFTNVE--------QVIIYNLPLSI---NHYVFQIAGHK---EAIAFYDP 1185 (1858)
Q Consensus 1139 LVATDVAARGLDIp~V~--------~VINyDlP~~~---e~YIHRIag~~---~aitfvt~ 1185 (1858)
-|||+.|+||-||.--. |||....|.+. ..---|.|++| .+--|++-
T Consensus 478 TIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSL 538 (925)
T PRK12903 478 TIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISL 538 (925)
T ss_pred EEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEec
Confidence 99999999999997544 99998887765 12222445555 44445554
|
|
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.18 Score=67.63 Aligned_cols=233 Identities=12% Similarity=0.067 Sum_probs=140.2
Q ss_pred cCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhh-hhcccccccccccccCcc
Q psy15269 867 TNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDID-KFVRDMRHVSNNILMSPN 945 (1858)
Q Consensus 867 ~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~-~~v~~l~~t~~~ll~~~~ 945 (1858)
++-..--|.|.++||.-+-+..+.-+..-.++.-|. .|-.+ .-.-+ .-.++++-|| +.
T Consensus 163 ~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~EL-----------TGD~q----l~~tei~~tqiiVTTP------EK 221 (1230)
T KOG0952|consen 163 DDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVREL-----------TGDTQ----LTKTEIADTQIIVTTP------EK 221 (1230)
T ss_pred CCceEEEEechHHHHHHHHHHHhhhcccccceEEEe-----------cCcch----hhHHHHHhcCEEEecc------cc
Confidence 455567899999999999877776666555555444 33322 22222 1234566665 23
Q ss_pred cccc-----------ccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccc
Q psy15269 946 YESD-----------VNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNN 1014 (1858)
Q Consensus 946 ~~~~-----------~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~ 1014 (1858)
|+-. +.+.=+++|||- ||. ++.+.+++.|...+-+.=.+...
T Consensus 222 wDvvTRk~~~d~~l~~~V~LviIDEVH----------lLh-----d~RGpvlEtiVaRtlr~vessqs------------ 274 (1230)
T KOG0952|consen 222 WDVVTRKSVGDSALFSLVRLVIIDEVH----------LLH-----DDRGPVLETIVARTLRLVESSQS------------ 274 (1230)
T ss_pred eeeeeeeeccchhhhhheeeEEeeeeh----------hhc-----CcccchHHHHHHHHHHHHHhhhh------------
Confidence 3322 223335577772 122 23345588887776543222111
Q ss_pred ccccccccccccCCCCCCcHhHHHHHHHhcCCCEE-EE-EccC-CcccEEEEEEECChh-----------hHHHHHHHhh
Q psy15269 1015 VSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIM-KL-VKPS-SVHLVKQYLIRTPKS-----------QKIVNLLSFL 1080 (1858)
Q Consensus 1015 ~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~-I~-v~~~-~~~~I~Q~~~~v~~~-----------~Kl~~Ll~lL 1080 (1858)
. ....--|||.|. ++++|+..=.||.. +. .... -...++|.++-.+.. -+.+++.+++
T Consensus 275 -----~--IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~ 346 (1230)
T KOG0952|consen 275 -----M--IRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL 346 (1230)
T ss_pred -----h--eEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHH
Confidence 0 001123899884 44566433334321 21 1111 122367776655433 1245556666
Q ss_pred cC-CcEEEEecChHHHHHHHHHHhhC----CCe-------------------EEEEecCCCCccHHHHHHHHHHHhcCCC
Q psy15269 1081 EG-KRSLIFVKTYRDASRIISAVQDS----NMM-------------------TIPMSNNGTSWSHVECLELLNLFNTGKS 1136 (1858)
Q Consensus 1081 ~~-~k~IIFvnTk~~ad~L~~~L~~~----g~~-------------------~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~ 1136 (1858)
.. .+++|||.++.++.+.|+.|.+. |.. ...-|.+|. .+.|.-+-+.|+.|.+
T Consensus 347 ~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~---r~DR~l~E~~F~~G~i 423 (1230)
T KOG0952|consen 347 QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGML---RSDRQLVEKEFKEGHI 423 (1230)
T ss_pred HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccc---hhhHHHHHHHHhcCCc
Confidence 55 78999999999999999998753 222 233477777 8999999999999999
Q ss_pred cEEEeccccccCCCCCCcceEE
Q psy15269 1137 SLVIMTLSDFIGNDFTNVEQVI 1158 (1858)
Q Consensus 1137 ~ILVATDVAARGLDIp~V~~VI 1158 (1858)
+||+||.-.|=|.+.|.--.+|
T Consensus 424 ~vL~cTaTLAwGVNLPA~aViI 445 (1230)
T KOG0952|consen 424 KVLCCTATLAWGVNLPAYAVII 445 (1230)
T ss_pred eEEEecceeeeccCCcceEEEe
Confidence 9999999999999999765554
|
|
| >KOG1000|consensus | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.064 Score=66.64 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=95.0
Q ss_pred CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhc-CCCcE-EEeccccccCCCCCCcceEEEc
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNT-GKSSL-VIMTLSDFIGNDFTNVEQVIIY 1160 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~-G~~~I-LVATDVAARGLDIp~V~~VINy 1160 (1858)
.|.+||+..+.-.|.+...+.+.++....|-|.-+ ...|....++|.. .+++| ++.--.+.-||++...+.||=.
T Consensus 493 ~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~---s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFa 569 (689)
T KOG1000|consen 493 RKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTP---SHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFA 569 (689)
T ss_pred ceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCC---chhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEE
Confidence 78999999999999999999999999999999998 8999999999965 34554 4556678899999999999999
Q ss_pred CCCCCh------hhhhhhccCcc-eEEE-EecCc-ccHHHHHHHHHHHhh
Q psy15269 1161 NLPLSI------NHYVFQIAGHK-EAIA-FYDPV-ADIGLASSLIKLLEY 1201 (1858)
Q Consensus 1161 DlP~~~------e~YIHRIag~~-~ait-fvt~~-~e~~~l~~Ie~~l~~ 1201 (1858)
++|++| |+-+||||.+. +-|. |+... .|..+...|.+.++.
T Consensus 570 EL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~v 619 (689)
T KOG1000|consen 570 ELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDV 619 (689)
T ss_pred EecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHH
Confidence 999997 99999998887 4443 44321 345566666666555
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.04 Score=74.21 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=76.9
Q ss_pred HHHHHHhhcC-CcEEEEecChHHHHHHHHHHhh---C---------------CC-------------------eEEEEec
Q psy15269 1073 IVNLLSFLEG-KRSLIFVKTYRDASRIISAVQD---S---------------NM-------------------MTIPMSN 1114 (1858)
Q Consensus 1073 l~~Ll~lL~~-~k~IIFvnTk~~ad~L~~~L~~---~---------------g~-------------------~~~~LHG 1114 (1858)
+..++..++. ++++|||++++.+...+..|+. . .+ .+..-|.
T Consensus 243 ~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhA 322 (766)
T COG1204 243 LELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHA 322 (766)
T ss_pred HHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccccc
Confidence 3344444544 8999999999999999999982 0 00 1334588
Q ss_pred CCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEE----EcC-----CCCChhhhhhhc
Q psy15269 1115 NGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVI----IYN-----LPLSINHYVFQI 1173 (1858)
Q Consensus 1115 ~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VI----NyD-----lP~~~e~YIHRI 1173 (1858)
+++ .++|..+-+.||+|+++||+||.-.|.|++.|.=..|| -|| .+-+.-+|+|-.
T Consensus 323 GL~---~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~ 387 (766)
T COG1204 323 GLP---REDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMA 387 (766)
T ss_pred CCC---HHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhcc
Confidence 898 99999999999999999999999999999999877766 466 555667777766
|
|
| >KOG0922|consensus | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.099 Score=67.55 Aligned_cols=173 Identities=12% Similarity=0.110 Sum_probs=113.6
Q ss_pred hHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEE
Q psy15269 983 KTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQ 1062 (1858)
Q Consensus 983 ~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q 1062 (1858)
.|.|..+++.+-++|.-|-- ..| |||+. .+++. .|..+-..+.+.. ....|+.
T Consensus 179 TDiLlGlLKki~~~R~~Lkl----------------------Iim-SATld--a~kfS-~yF~~a~i~~i~G-R~fPVei 231 (674)
T KOG0922|consen 179 TDILLGLLKKILKKRPDLKL----------------------IIM-SATLD--AEKFS-EYFNNAPILTIPG-RTFPVEI 231 (674)
T ss_pred HHHHHHHHHHHHhcCCCceE----------------------EEE-eeeec--HHHHH-HHhcCCceEeecC-CCCceeE
Confidence 45566677777666665421 112 77776 33344 4445433333432 2223555
Q ss_pred EEEECChhhHHHH----HHHhhcC---CcEEEEecChHHHHHHHHHHhhC------CC--eEEEEecCCCCccHHHHHHH
Q psy15269 1063 YLIRTPKSQKIVN----LLSFLEG---KRSLIFVKTYRDASRIISAVQDS------NM--MTIPMSNNGTSWSHVECLEL 1127 (1858)
Q Consensus 1063 ~~~~v~~~~Kl~~----Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~------g~--~~~~LHG~ms~~~Q~eR~~~ 1127 (1858)
.|..-+..+-+.. .+++... +-++||-.-+++.+..++.|++. +. -+..+||.++ .+++.++
T Consensus 232 ~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~---~e~Q~rv 308 (674)
T KOG0922|consen 232 LYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALP---SEEQSRV 308 (674)
T ss_pred EeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCC---HHHhhcc
Confidence 5555444443333 3333322 67999999999999999999864 11 2467999999 9999999
Q ss_pred HHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCC------------------Chhhhhhhc--cCcc---eEEEEec
Q psy15269 1128 LNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPL------------------SINHYVFQI--AGHK---EAIAFYD 1184 (1858)
Q Consensus 1128 L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~------------------~~e~YIHRI--ag~~---~aitfvt 1184 (1858)
++.-..|.-+|.+||++|.=-|-|++|.+||.-.+-. +-.+=.||. ||+. .++-+|+
T Consensus 309 F~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYt 388 (674)
T KOG0922|consen 309 FDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYT 388 (674)
T ss_pred ccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeee
Confidence 8888888999999999999999999999999544322 224445555 3333 7888998
Q ss_pred C
Q psy15269 1185 P 1185 (1858)
Q Consensus 1185 ~ 1185 (1858)
.
T Consensus 389 e 389 (674)
T KOG0922|consen 389 E 389 (674)
T ss_pred H
Confidence 6
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.044 Score=74.03 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=94.4
Q ss_pred CCCCCcH--hHHHHHHHhcCCCEEEEE-ccC-CcccEEEEEEECChhhHHHH-----------HHHhhcCCcEEEEecCh
Q psy15269 1028 DSLFSWG--DIEEESNIEVEDPIMKLV-KPS-SVHLVKQYLIRTPKSQKIVN-----------LLSFLEGKRSLIFVKTY 1092 (1858)
Q Consensus 1028 eSAT~p~--~I~~la~~~L~dpv~I~v-~~~-~~~~I~Q~~~~v~~~~Kl~~-----------Ll~lL~~~k~IIFvnTk 1092 (1858)
-|||.|. +|..+.+. +|.-+-. +++ ....++|.|+-+..+..+.. ++.-....++||||.+|
T Consensus 480 LSATLPNy~DV~~Fl~v---~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsR 556 (1674)
T KOG0951|consen 480 LSATLPNYEDVASFLRV---DPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSR 556 (1674)
T ss_pred ecccCCchhhhHHHhcc---CcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 4889884 45444333 3322211 111 22238888887753322222 12222238999999999
Q ss_pred HHHHHHHHHHhh--------------C-----------------------CCeEEEEecCCCCccHHHHHHHHHHHhcCC
Q psy15269 1093 RDASRIISAVQD--------------S-----------------------NMMTIPMSNNGTSWSHVECLELLNLFNTGK 1135 (1858)
Q Consensus 1093 ~~ad~L~~~L~~--------------~-----------------------g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~ 1135 (1858)
+.+-+.|++++. . -+.+..-|.+|+ ..+|..+-+-|+.|+
T Consensus 557 kET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~---R~dR~~~EdLf~~g~ 633 (1674)
T KOG0951|consen 557 KETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLN---RKDRELVEDLFADGH 633 (1674)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCC---cchHHHHHHHHhcCc
Confidence 988777777661 0 223566799999 999999999999999
Q ss_pred CcEEEeccccccCCCCCCcceEEE----cCC------CCChhhhhhhc
Q psy15269 1136 SSLVIMTLSDFIGNDFTNVEQVII----YNL------PLSINHYVFQI 1173 (1858)
Q Consensus 1136 ~~ILVATDVAARGLDIp~V~~VIN----yDl------P~~~e~YIHRI 1173 (1858)
+++||+|--.|+|++.|.-+.+|- ||. +.++.+-+++.
T Consensus 634 iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qml 681 (1674)
T KOG0951|consen 634 IQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQML 681 (1674)
T ss_pred eeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHH
Confidence 999999999999999998887773 653 33567777777
|
|
| >KOG1477|consensus | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.011 Score=75.29 Aligned_cols=70 Identities=26% Similarity=0.297 Sum_probs=63.1
Q ss_pred EEEeCCceeeeCCCC-CccCCCcCCCCEEEEEEeccCceEEEEeCCccccccccCCCCCCceeEEEEEeecCC
Q psy15269 1490 LYRAYSGNVYHSGEQ-TTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNA 1561 (1858)
Q Consensus 1490 ~y~~~~g~~~h~~~~-~~~~~~~~~gd~i~v~lDm~~~tl~f~~ng~~~GvAF~~l~~~~~lyP~Vs~y~~~~ 1561 (1858)
+||+++|+.|-.+.. .+++|.|+.||.|+|.+|-..++-+|++||...||||-..+.. +||=|.+|..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~i~~~~~~~~~~~~~~~~~~~~gi~f~~~~~~--~~~dvg~~~~~~ 72 (469)
T KOG1477|consen 2 GYHGDDGNFFLKSGDGQLYGPVFTTGDVIPCEVNTINGSDFFTKNGPDMGIAFYTPPAL--LYHDVGVVQAGE 72 (469)
T ss_pred CCcccchhhhhhcccccccCCcCCccccccceEeccCCceeEEEEcCCcceeeecCccc--cCCCcceeeCCC
Confidence 689999999977776 9999999999999999999999999999999999999999775 888888864444
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.23 Score=67.27 Aligned_cols=129 Identities=13% Similarity=0.097 Sum_probs=90.4
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECC-hhh-HHHHHHHhh----cC--CcEEEEecChHHHHHHHH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTP-KSQ-KIVNLLSFL----EG--KRSLIFVKTYRDASRIIS 1100 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~-~~~-Kl~~Ll~lL----~~--~k~IIFvnTk~~ad~L~~ 1100 (1858)
|||... +++++ |+.+.-.+.+....- .|+-+|.... ..+ -...+...+ .. +.++||..-.++.+...+
T Consensus 202 SATld~--~rfs~-~f~~apvi~i~GR~f-PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~ 277 (845)
T COG1643 202 SATLDA--ERFSA-YFGNAPVIEIEGRTY-PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAE 277 (845)
T ss_pred ecccCH--HHHHH-HcCCCCEEEecCCcc-ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHH
Confidence 777654 34544 445444444542222 2444453332 222 222233322 22 789999999999999999
Q ss_pred HHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCC
Q psy15269 1101 AVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPL 1164 (1858)
Q Consensus 1101 ~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~ 1164 (1858)
.|++ ..+.+..+||.++ +.++.++++--..|+-+|.+||+||.=+|=|++|.+||.-.+-+
T Consensus 278 ~L~~~~l~~~~~i~PLy~~L~---~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak 342 (845)
T COG1643 278 WLEKAELGDDLEILPLYGALS---AEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAK 342 (845)
T ss_pred HHHhccccCCcEEeeccccCC---HHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccc
Confidence 9997 4578999999999 88888888777777666999999999999999999999766654
|
|
| >KOG0950|consensus | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.2 Score=66.98 Aligned_cols=108 Identities=12% Similarity=0.091 Sum_probs=82.9
Q ss_pred CcEEEEecChHHHHHHHHHHhhC--------------------------------------CCeEEEEecCCCCccHHHH
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDS--------------------------------------NMMTIPMSNNGTSWSHVEC 1124 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~--------------------------------------g~~~~~LHG~ms~~~Q~eR 1124 (1858)
.++||||.+|+.|+.++..+.+. -+.+...|.+++ +.+|
T Consensus 461 ~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT---~eER 537 (1008)
T KOG0950|consen 461 SSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLT---SEER 537 (1008)
T ss_pred CeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccc---cchH
Confidence 56999999999999988666421 122677799999 9999
Q ss_pred HHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCC----CCChhhhhhhccCcc--------eEEEEecCcccHHHH
Q psy15269 1125 LELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNL----PLSINHYVFQIAGHK--------EAIAFYDPVADIGLA 1192 (1858)
Q Consensus 1125 ~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDl----P~~~e~YIHRIag~~--------~aitfvt~~~e~~~l 1192 (1858)
+.+=..||+|-+.|++||+-.+=|.+.|..+++|-.-. +.+.-.|-+++|+++ .+|..+.+ .|...+
T Consensus 538 ~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~-~e~~~~ 616 (1008)
T KOG0950|consen 538 EIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKS-SEKKRV 616 (1008)
T ss_pred HHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeec-cchhHH
Confidence 99999999999999999999999999999999986532 124467888872222 47888887 555444
Q ss_pred HH
Q psy15269 1193 SS 1194 (1858)
Q Consensus 1193 ~~ 1194 (1858)
.+
T Consensus 617 ~~ 618 (1008)
T KOG0950|consen 617 RE 618 (1008)
T ss_pred HH
Confidence 43
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=93.42 E-value=2.1 Score=57.23 Aligned_cols=116 Identities=11% Similarity=0.098 Sum_probs=81.1
Q ss_pred EEECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCC-Cc
Q psy15269 1064 LIRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGK-SS 1137 (1858)
Q Consensus 1064 ~~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~-~~ 1137 (1858)
.++..+.+|..+++.-+. +..++|.|.+....+.+++.|.+.|++...|+..-. +++..+-. +.|+ -.
T Consensus 404 ~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-----~~EA~IIa-~AG~~ga 477 (764)
T PRK12326 404 RVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-----AEEARIIA-EAGKYGA 477 (764)
T ss_pred ceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-----HhHHHHHH-hcCCCCc
Confidence 345567788888877653 378999999999999999999999999999988643 33322221 3443 46
Q ss_pred EEEeccccccCCCCCC---------------cceEEEcCCCCCh---hhhhhhccCcc---eEEEEecC
Q psy15269 1138 LVIMTLSDFIGNDFTN---------------VEQVIIYNLPLSI---NHYVFQIAGHK---EAIAFYDP 1185 (1858)
Q Consensus 1138 ILVATDVAARGLDIp~---------------V~~VINyDlP~~~---e~YIHRIag~~---~aitfvt~ 1185 (1858)
|-|||+.|.||-||.- -=|||--..|.+. .+-.-|.|++| .+--|++-
T Consensus 478 VTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSl 546 (764)
T PRK12326 478 VTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSL 546 (764)
T ss_pred EEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEc
Confidence 8999999999999862 2388887777765 22222445555 45555554
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.12 Score=57.23 Aligned_cols=75 Identities=24% Similarity=0.413 Sum_probs=57.6
Q ss_pred CcEEEEecChHHHHHHHHHHhhCC----CeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc--ccccCCCCCC--c
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSN----MMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL--SDFIGNDFTN--V 1154 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g----~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD--VAARGLDIp~--V 1154 (1858)
+.++||+++.+..+.+.+.++..+ +.+. .++ ..++...+++|++++-.||+++. ..+.|||+++ +
T Consensus 10 g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~-~q~------~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~ 82 (167)
T PF13307_consen 10 GGVLVFFPSYRRLEKVYERLKERLEEKGIPVF-VQG------SKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLL 82 (167)
T ss_dssp SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEE-EST------CCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhhcccccceee-ecC------cchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchh
Confidence 789999999999999999998753 3222 222 45788999999999999999999 9999999986 7
Q ss_pred ceEEEcCCCC
Q psy15269 1155 EQVIIYNLPL 1164 (1858)
Q Consensus 1155 ~~VINyDlP~ 1164 (1858)
+.||-..+|.
T Consensus 83 r~vii~glPf 92 (167)
T PF13307_consen 83 RAVIIVGLPF 92 (167)
T ss_dssp EEEEEES---
T ss_pred heeeecCCCC
Confidence 7899999995
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.82 Score=64.31 Aligned_cols=283 Identities=15% Similarity=0.163 Sum_probs=148.3
Q ss_pred CeEEEEEcCCEEEEEecCCcEEEEcccccCCCCCCCCCCceee--------------c-Cc----cCcceEEEEEecCcE
Q psy15269 220 NIRHIEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRV--------------P-LE----AAIVSLSVSKCSEAH 280 (1858)
Q Consensus 220 ~IkqVA~G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V--------------~-~~----~~i~~Is~Ia~G~~H 280 (1858)
..++|......-|+.+.+|++|.---...+.+...-...|.+. . |. ..+..++.-.-|..|
T Consensus 490 ~A~~VgLs~drLFvADseGkLYsa~l~~~~~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~~GQ~H 569 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSEGKLYSADLPAAQDNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDRQGQRH 569 (1774)
T ss_pred hhhheeecCCeEEEEeCCCCEEecccccccCCCcceEeccccccccccccccccceeeccccCCCCeeeEEEeccCCcee
Confidence 3677888888888899999999754333332222222222222 0 00 111222333457778
Q ss_pred EEEEeeCCcEEEEeCCCCCCcCCCCCcccc---cceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCC--
Q psy15269 281 VLTVTSEGEVYSWGVGEHGKLGHGNTLSQR---RPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLG-- 355 (1858)
Q Consensus 281 tlaLT~dG~VysWG~N~~GQLG~g~~~~~~---~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG-- 355 (1858)
+++|+++|.=|.=|+|-.-.|=..+..-.. .|.. .. .+--|..-.++|. +|+|+.|-....+--.
T Consensus 570 s~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~-------~~--~ldl~r~G~v~L~-~G~i~~wD~ttq~W~~~~ 639 (1774)
T PF11725_consen 570 SHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAP-------HE--ILDLGRAGLVGLQ-DGKIQYWDSTTQCWKDAG 639 (1774)
T ss_pred eccccccCCccCCCCcccceeEeeccCCCCCCCCCCh-------HH--hhccccccceeec-cceEeeecCcchhhhhcc
Confidence 888877777777777654443322221111 1111 11 1234666678888 5999999654322211
Q ss_pred --------CCCCCccc--c---ccccccCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeec
Q psy15269 356 --------HGDLKSRH--T---PTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEAL 422 (1858)
Q Consensus 356 --------~G~~~~~~--~---P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l 422 (1858)
.|-...-+ . ...+.....--.|+-|.+|.++++.-.. -+..| ..++.+
T Consensus 640 ~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~-~~e~G------------------~~l~Gl 700 (1774)
T PF11725_consen 640 VKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRN-KVELG------------------DALEGL 700 (1774)
T ss_pred CcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccC-CCCCC------------------ccccCC
Confidence 11111000 0 0000001112244555555555543321 22222 123444
Q ss_pred ccccEEEEE-ecCceEEEEecCCcEEEEeCCCCCCCccccccEEec--CCCCCCEEEEEEcCceE-EEEEeCCeEEEEeC
Q psy15269 423 RKFRVRKVC-AGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVT--GLSSHQIVDVSIGDSHV-LALSQYNEVYAWGS 498 (1858)
Q Consensus 423 ~~~~Iv~Ia-aG~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~--~l~~~~Iv~Ia~G~~Ht-lALt~dG~VYaWG~ 498 (1858)
.+..|..++ .+.++.+++++.|++-..- .. ..|..++ ++. ..|++|++-..|. +|++.+|++|.--.
T Consensus 701 ~~~~i~a~Avv~~~~fvald~qg~lt~h~-k~-------g~p~~l~~~gl~-G~ik~l~lD~~~nL~Alt~~G~Lf~~~k 771 (1774)
T PF11725_consen 701 EDRVITAFAVVNDNKFVALDDQGDLTAHQ-KP-------GRPVPLSRPGLS-GEIKDLALDEKQNLYALTSTGELFRLPK 771 (1774)
T ss_pred CcCcceeEEEEcCCceEEeccCCcccccc-CC-------CCCccCCCCCCC-cchhheeeccccceeEecCCCceeecCH
Confidence 444555554 4668889999999987754 11 1133332 343 4799999998865 68999999998654
Q ss_pred CCCCCCCCCCCCCCcccCeeeecCCCceEEEEEecCcceEEEee
Q psy15269 499 NTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTV 542 (1858)
Q Consensus 499 N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~ 542 (1858)
-.+-+.-.+....+ ...+|....+..|..+....+|...+.-
T Consensus 772 ~~WQ~~~~~~~~~~--~W~~v~lP~~~~v~~l~~~~~~~l~~~~ 813 (1774)
T PF11725_consen 772 EAWQGNAEGDQMAA--KWQKVALPDEQPVKSLRTNDDNHLSAQI 813 (1774)
T ss_pred HHhhCcccCCcccc--CceeccCCCCCchhhhhcCCCCceEEEe
Confidence 43333222222222 3344444456678889999999887763
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >KOG3669|consensus | Back alignment and domain information |
|---|
Probab=91.72 E-value=17 Score=46.94 Aligned_cols=69 Identities=12% Similarity=0.169 Sum_probs=45.8
Q ss_pred CCCeEEEEEcC-CEEEEEecCCcEEE-Ecc---cccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEE
Q psy15269 218 PSNIRHIEAGQ-FCTFLLDSTGGLLV-YGK---GWLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYS 292 (1858)
Q Consensus 218 ~~~IkqVA~G~-~hTlaLt~dG~Vya-wG~---NqLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~Vys 292 (1858)
..++.+|++|. ....+++.+|.||. -|- |+.|. . =+.|+.+.....++.|+.|....-+||.+|++|.
T Consensus 226 ~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~Gd--s-----WkdI~tP~~a~~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 226 YTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGD--S-----WKDIVTPRQALEPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred CCccceEeecCcceEEEEeeCCcEEEEecccccCCCCc--h-----hhhccCcccccceEEEEeccceEEEEecCCcEEE
Confidence 34789999999 77788999999975 232 12221 1 1122222223336667789888899999999975
Q ss_pred E
Q psy15269 293 W 293 (1858)
Q Consensus 293 W 293 (1858)
=
T Consensus 299 r 299 (705)
T KOG3669|consen 299 R 299 (705)
T ss_pred E
Confidence 3
|
|
| >KOG4439|consensus | Back alignment and domain information |
|---|
Probab=91.37 E-value=1 Score=58.60 Aligned_cols=120 Identities=13% Similarity=0.204 Sum_probs=84.8
Q ss_pred EEEECChhhHHHHHHHhhcC------CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHH--hcC
Q psy15269 1063 YLIRTPKSQKIVNLLSFLEG------KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLF--NTG 1134 (1858)
Q Consensus 1063 ~~~~v~~~~Kl~~Ll~lL~~------~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~F--r~G 1134 (1858)
.|-......|+..++..++. +++||-..=-.-.+-+...|++.|+....+||... -.+|..+++.| ++|
T Consensus 721 ~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~---vK~Rq~iv~~FN~~k~ 797 (901)
T KOG4439|consen 721 AFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVL---VKDRQEIVDEFNQEKG 797 (901)
T ss_pred hcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccc---hhHHHHHHHHHHhccC
Confidence 34444455566666555432 45555433333346667788899999999999999 99999999999 456
Q ss_pred CCcEEEec-cccccCCCCCCcceEEEcCCCCCh------hhhhhhccCcc-eEEE-EecC
Q psy15269 1135 KSSLVIMT-LSDFIGNDFTNVEQVIIYNLPLSI------NHYVFQIAGHK-EAIA-FYDP 1185 (1858)
Q Consensus 1135 ~~~ILVAT-DVAARGLDIp~V~~VINyDlP~~~------e~YIHRIag~~-~ait-fvt~ 1185 (1858)
..+|++-. -..+-||+.-+.+|+|-.|+-|+| -+-|.|+|.++ +-|- |+..
T Consensus 798 ~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~ 857 (901)
T KOG4439|consen 798 GARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCK 857 (901)
T ss_pred CceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEec
Confidence 67776544 445567999999999999999998 46677777777 4443 4443
|
|
| >KOG0948|consensus | Back alignment and domain information |
|---|
Probab=91.19 E-value=1.7 Score=57.07 Aligned_cols=161 Identities=11% Similarity=0.057 Sum_probs=107.1
Q ss_pred CCCCcHhHHHHHHH---hcCCCEEEEEccCCcccEEEEEEEC---------C-----hhhHHHHHHHhhc----------
Q psy15269 1029 SLFSWGDIEEESNI---EVEDPIMKLVKPSSVHLVKQYLIRT---------P-----KSQKIVNLLSFLE---------- 1081 (1858)
Q Consensus 1029 SAT~p~~I~~la~~---~L~dpv~I~v~~~~~~~I~Q~~~~v---------~-----~~~Kl~~Ll~lL~---------- 1081 (1858)
|||.|...+ +|++ .-+.|..|....-..+.++||+++. + +.+.+......|.
T Consensus 273 SATiPNA~q-FAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~ 351 (1041)
T KOG0948|consen 273 SATIPNARQ-FAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKK 351 (1041)
T ss_pred eccCCCHHH-HHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccc
Confidence 899997643 4443 4468999988878888898887653 1 1222332222221
Q ss_pred -------------------------------CCcEEEEecChHHHHHHHHHHhhCCCe----------------------
Q psy15269 1082 -------------------------------GKRSLIFVKTYRDASRIISAVQDSNMM---------------------- 1108 (1858)
Q Consensus 1082 -------------------------------~~k~IIFvnTk~~ad~L~~~L~~~g~~---------------------- 1108 (1858)
...+|||+=+|+.|+.+|..|.+..++
T Consensus 352 ~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~Lsee 431 (1041)
T KOG0948|consen 352 ANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEE 431 (1041)
T ss_pred cccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChh
Confidence 045999999999999999998765433
Q ss_pred -----------------EEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEE----cCCCC---
Q psy15269 1109 -----------------TIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVII----YNLPL--- 1164 (1858)
Q Consensus 1109 -----------------~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VIN----yDlP~--- 1164 (1858)
+..-|+++- +--.+-+---|..|-+++|.||.-.+-||+.|.=+.|+- ||=-.
T Consensus 432 Dr~LPqie~iLPLL~RGIGIHHsGLL---PIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRw 508 (1041)
T KOG0948|consen 432 DRELPQIENILPLLRRGIGIHHSGLL---PILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRW 508 (1041)
T ss_pred hccchHHHHHHHHHHhccccccccch---HHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceee
Confidence 344578775 555555555699999999999999999999998877762 22111
Q ss_pred -Chhhhhhhc---cCcc-----eEEEEecCcccHHHHH
Q psy15269 1165 -SINHYVFQI---AGHK-----EAIAFYDPVADIGLAS 1193 (1858)
Q Consensus 1165 -~~e~YIHRI---ag~~-----~aitfvt~~~e~~~l~ 1193 (1858)
+.-.|||-. |++| .+|..++..-+....+
T Consensus 509 issGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak 546 (1041)
T KOG0948|consen 509 ISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAK 546 (1041)
T ss_pred ecccceEEecccccccCCCCCceEEEEecCcCCHHHHH
Confidence 235688865 3333 5677776533333333
|
|
| >KOG0388|consensus | Back alignment and domain information |
|---|
Probab=90.98 E-value=1.1 Score=58.15 Aligned_cols=114 Identities=11% Similarity=0.165 Sum_probs=94.7
Q ss_pred hhhHHHHHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCc-EEEecccc
Q psy15269 1069 KSQKIVNLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSS-LVIMTLSD 1145 (1858)
Q Consensus 1069 ~~~Kl~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~-ILVATDVA 1145 (1858)
+-.+++.|+.-|+. .++++|+.-.+..+.+-++|...||.-..+-|... ...|..++.+|...++= .|+.|-..
T Consensus 1029 KL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk---~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSK---ASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred ceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcch---hhHHHHHHhhccCCceEEEEEecccC
Confidence 33456666666654 79999999999999999999999999999999988 99999999999875544 48999999
Q ss_pred ccCCCCCCcceEEEcCCCCCh------hhhhhhccCcc--eEEEEecC
Q psy15269 1146 FIGNDFTNVEQVIIYNLPLSI------NHYVFQIAGHK--EAIAFYDP 1185 (1858)
Q Consensus 1146 ARGLDIp~V~~VINyDlP~~~------e~YIHRIag~~--~aitfvt~ 1185 (1858)
+-||++...+.||=||--++| -+--||.|... +.+-+++.
T Consensus 1106 GLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITR 1153 (1185)
T ss_pred cccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccc
Confidence 999999999999999999887 45667776555 55666654
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=90.92 E-value=1.8 Score=59.43 Aligned_cols=116 Identities=10% Similarity=0.027 Sum_probs=81.4
Q ss_pred EEECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC-CCc
Q psy15269 1064 LIRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG-KSS 1137 (1858)
Q Consensus 1064 ~~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G-~~~ 1137 (1858)
.++..+.+|..+++.-+. +..++|-+.+....+.|++.|++.|++...|+.... +|+.-+-. +.| .-.
T Consensus 605 ~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-----~~EAeIVA-~AG~~Ga 678 (1112)
T PRK12901 605 LVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-----QKEAEIVA-EAGQPGT 678 (1112)
T ss_pred eEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-----hhHHHHHH-hcCCCCc
Confidence 345677888888877654 378999999999999999999999999888877643 33333322 233 346
Q ss_pred EEEeccccccCCCCC--------CcceEEEcCCCCCh---hhhhhhccCcc---eEEEEecC
Q psy15269 1138 LVIMTLSDFIGNDFT--------NVEQVIIYNLPLSI---NHYVFQIAGHK---EAIAFYDP 1185 (1858)
Q Consensus 1138 ILVATDVAARGLDIp--------~V~~VINyDlP~~~---e~YIHRIag~~---~aitfvt~ 1185 (1858)
|-|||+.|+||-||. +-=|||--..|.+. .+-.-|.|++| .+--|++-
T Consensus 679 VTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSL 740 (1112)
T PRK12901 679 VTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSL 740 (1112)
T ss_pred EEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEc
Confidence 889999999999986 33488877777664 12222345555 45555554
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=90.63 E-value=0.98 Score=61.10 Aligned_cols=86 Identities=16% Similarity=0.072 Sum_probs=63.9
Q ss_pred EEECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcE
Q psy15269 1064 LIRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSL 1138 (1858)
Q Consensus 1064 ~~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~I 1138 (1858)
.++....+|...++.-+. +..++|-|.|....+.++..|.+.|++...++..-. +.+++..+=.=.-..-.|
T Consensus 401 ~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~---~~~~EA~IIA~AG~~G~V 477 (870)
T CHL00122 401 LIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPE---NVRRESEIVAQAGRKGSI 477 (870)
T ss_pred eEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCc---cchhHHHHHHhcCCCCcE
Confidence 345566777777766543 378999999999999999999999999999999742 334443333322234468
Q ss_pred EEeccccccCCCCC
Q psy15269 1139 VIMTLSDFIGNDFT 1152 (1858)
Q Consensus 1139 LVATDVAARGLDIp 1152 (1858)
-|||+.|+||-||.
T Consensus 478 TIATNMAGRGTDI~ 491 (870)
T CHL00122 478 TIATNMAGRGTDII 491 (870)
T ss_pred EEeccccCCCcCee
Confidence 99999999999974
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=90.60 E-value=1.9 Score=58.85 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=64.0
Q ss_pred EECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC-CCcE
Q psy15269 1065 IRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG-KSSL 1138 (1858)
Q Consensus 1065 ~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G-~~~I 1138 (1858)
++..+.+|...++.-+. +..++|-+.|....+.|+..|++.|++...|+..- .+++..+-. +.| .-.|
T Consensus 427 vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~-----~~~EA~IIa-~AG~~GaV 500 (913)
T PRK13103 427 VYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKY-----HEKEAEIIA-QAGRPGAL 500 (913)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhcccc-----chhHHHHHH-cCCCCCcE
Confidence 45677888888877654 37899999999999999999999999988887754 344433333 455 4468
Q ss_pred EEeccccccCCCCC
Q psy15269 1139 VIMTLSDFIGNDFT 1152 (1858)
Q Consensus 1139 LVATDVAARGLDIp 1152 (1858)
-|||+.|.||-||.
T Consensus 501 TIATNMAGRGTDIk 514 (913)
T PRK13103 501 TIATNMAGRGTDIL 514 (913)
T ss_pred EEeccCCCCCCCEe
Confidence 99999999999984
|
|
| >KOG0947|consensus | Back alignment and domain information |
|---|
Probab=89.75 E-value=1.8 Score=58.14 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=72.7
Q ss_pred HHHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCe---------------------------------------EEE
Q psy15269 1074 VNLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMM---------------------------------------TIP 1111 (1858)
Q Consensus 1074 ~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~---------------------------------------~~~ 1111 (1858)
..++..++. -.+||||=+|++||+.++.|....+. +..
T Consensus 556 l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaV 635 (1248)
T KOG0947|consen 556 LDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAV 635 (1248)
T ss_pred HHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchh
Confidence 334444443 46999999999999999999743221 455
Q ss_pred EecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCC--------CChhhhhhhc---cCcc
Q psy15269 1112 MSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLP--------LSINHYVFQI---AGHK 1177 (1858)
Q Consensus 1112 LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP--------~~~e~YIHRI---ag~~ 1177 (1858)
-||++- +--.+-+---|..|-++||+||.-.|.|++.|.=..|+.-=-- -.|-.|+|-. |++|
T Consensus 636 HH~GlL---PivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRG 709 (1248)
T KOG0947|consen 636 HHGGLL---PIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRG 709 (1248)
T ss_pred hcccch---HHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccc
Confidence 688776 6666666667999999999999999999999988888742110 1356777765 5555
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=89.54 E-value=1.4 Score=59.84 Aligned_cols=84 Identities=13% Similarity=0.126 Sum_probs=64.4
Q ss_pred EECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCC-CcE
Q psy15269 1065 IRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGK-SSL 1138 (1858)
Q Consensus 1065 ~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~-~~I 1138 (1858)
++....+|...++.-+. +..++|-|.|.+..+.+++.|.+.|++...++..-. +.+|+..+-. ..|+ -.|
T Consensus 417 vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~---~~~~EA~IIa-~AG~~GaV 492 (939)
T PRK12902 417 VYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPE---NVEREAEIVA-QAGRKGAV 492 (939)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCc---chHhHHHHHH-hcCCCCcE
Confidence 45567788888776554 378999999999999999999999999999999732 3344443332 2444 458
Q ss_pred EEeccccccCCCCC
Q psy15269 1139 VIMTLSDFIGNDFT 1152 (1858)
Q Consensus 1139 LVATDVAARGLDIp 1152 (1858)
-|||+.|+||-||.
T Consensus 493 TIATNMAGRGTDIk 506 (939)
T PRK12902 493 TIATNMAGRGTDII 506 (939)
T ss_pred EEeccCCCCCcCEe
Confidence 99999999999974
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=89.00 E-value=6.8 Score=55.85 Aligned_cols=246 Identities=17% Similarity=0.169 Sum_probs=122.5
Q ss_pred eEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCccccccee--------------eecCCCCC-----cEEEEEec
Q psy15269 270 SLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKL--------------IMGGLYGK-----RVTQVSAG 330 (1858)
Q Consensus 270 ~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~--------------V~~~l~~~-----~IvqVa~G 330 (1858)
....|....++-++.+.+|++|+--....+ .+.......|.. |.+++.++ -.++=..|
T Consensus 490 ~A~~VgLs~drLFvADseGkLYsa~l~~~~---~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~~G 566 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSEGKLYSADLPAAQ---DNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDRQG 566 (1774)
T ss_pred hhhheeecCCeEEEEeCCCCEEeccccccc---CCCcceEeccccccccccccccccceeeccccCCCCeeeEEEeccCC
Confidence 555566677789999999999985433221 111111122222 22222221 13333567
Q ss_pred CceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCC----
Q psy15269 331 HSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLG---- 406 (1858)
Q Consensus 331 ~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG---- 406 (1858)
..|+++|.++|.=|.=|+|-.-.|=..+..-...|. .+.. -..+-.|..-.++|. +|+ |+.|-....+--.
T Consensus 567 Q~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~-~p~~--~~~ldl~r~G~v~L~-~G~-i~~wD~ttq~W~~~~~k 641 (1774)
T PF11725_consen 567 QRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPP-APAP--HEILDLGRAGLVGLQ-DGK-IQYWDSTTQCWKDAGVK 641 (1774)
T ss_pred ceeeccccccCCccCCCCcccceeEeeccCCCCCCC-CCCh--HHhhccccccceeec-cce-EeeecCcchhhhhccCc
Confidence 788888888888777777754443322211100000 0001 112234555567777 485 9888543332211
Q ss_pred ------CCCCCceecc--EEeeec-ccccEEEEEecCceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEE
Q psy15269 407 ------HEDTGKVTTP--KVIEAL-RKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDV 477 (1858)
Q Consensus 407 ------~g~~~~~~~P--~~V~~l-~~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~I 477 (1858)
+|-..+.+.- -+|..+ -...--+|+-|.++.++++.--.-+. .=..+.++.+..|+.+
T Consensus 642 d~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e-------------~G~~l~Gl~~~~i~a~ 708 (1774)
T PF11725_consen 642 DIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVE-------------LGDALEGLEDRVITAF 708 (1774)
T ss_pred CHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCC-------------CCccccCCCcCcceeE
Confidence 1111111100 000000 00011133444444444432221111 1133556666678877
Q ss_pred EE-cCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEEecCcceE-EEeecCCCCcEEee
Q psy15269 478 SI-GDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSI-AYTVPPSNSALSSA 552 (1858)
Q Consensus 478 a~-G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~-alt~~~~dG~vy~W 552 (1858)
+. +.++.+++++.|++-+.= .-| . +.|....++++ .|+.|+.-..|.+ |++ .+|++|+-
T Consensus 709 Avv~~~~fvald~qg~lt~h~--k~g-----~-----p~~l~~~gl~G-~ik~l~lD~~~nL~Alt---~~G~Lf~~ 769 (1774)
T PF11725_consen 709 AVVNDNKFVALDDQGDLTAHQ--KPG-----R-----PVPLSRPGLSG-EIKDLALDEKQNLYALT---STGELFRL 769 (1774)
T ss_pred EEEcCCceEEeccCCcccccc--CCC-----C-----CccCCCCCCCc-chhheeeccccceeEec---CCCceeec
Confidence 75 788999999998876543 111 1 12222335544 5889999888764 565 79999964
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=88.92 E-value=1.8 Score=59.57 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=59.7
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCC--cceEEE
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTN--VEQVII 1159 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~--V~~VIN 1159 (1858)
.++++||+++.+..+.+++.|....+++ ...|.-. .|.+++++|++++-.||++|+...+|+|+|+ ...||-
T Consensus 647 ~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~-----~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI 720 (820)
T PRK07246 647 QQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG-----TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVI 720 (820)
T ss_pred CCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc-----cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEE
Confidence 3889999999999999999998765555 4555322 2566899999998999999999999999973 445555
Q ss_pred cCCC
Q psy15269 1160 YNLP 1163 (1858)
Q Consensus 1160 yDlP 1163 (1858)
.-+|
T Consensus 721 ~kLP 724 (820)
T PRK07246 721 TRLP 724 (820)
T ss_pred ecCC
Confidence 5566
|
|
| >KOG3669|consensus | Back alignment and domain information |
|---|
Probab=88.82 E-value=10 Score=48.79 Aligned_cols=109 Identities=18% Similarity=0.262 Sum_probs=72.4
Q ss_pred ecCceEEEEEeCCeEEEEecCCCCCCCCCCCCc-cccccccccCCCceEEeecC-ceEEEEEcCCCEEEEEeCCCCCCCC
Q psy15269 329 AGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKS-RHTPTLVTELSDVGAVSCGE-SHTLVLSQDGHTVWSMGSGNLGKLG 406 (1858)
Q Consensus 329 ~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~-~~~P~~V~~l~~I~~IAcG~-~HTlaLt~dG~tVysWG~N~~GQLG 406 (1858)
.|.....|++.+|++|.= -|.....+ -..-+.|....++.+|++|. .-..+++.+|..+|-.|-..+.+.|
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~G 262 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEG 262 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEecccccCCCC
Confidence 455666778888887751 22221111 11222334444788999999 7778999999866677877777766
Q ss_pred CCCCCceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEe
Q psy15269 407 HEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG 450 (1858)
Q Consensus 407 ~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WG 450 (1858)
..=. ++.+|.... .++.|+.|....-+||.+|.+|.--
T Consensus 263 dsWk-dI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfrr 300 (705)
T KOG3669|consen 263 DSWK-DIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFRR 300 (705)
T ss_pred chhh-hccCccccc-----ceEEEEeccceEEEEecCCcEEEEe
Confidence 5422 444444332 2899999999999999999998753
|
|
| >KOG2340|consensus | Back alignment and domain information |
|---|
Probab=88.30 E-value=1.7 Score=55.25 Aligned_cols=142 Identities=14% Similarity=0.164 Sum_probs=99.8
Q ss_pred CCCCcHhHHHHHHHhcCCCE-EEEEccCCcc--------cEEEEEE--EC-----ChhhHHHHHHHhhcC-------CcE
Q psy15269 1029 SLFSWGDIEEESNIEVEDPI-MKLVKPSSVH--------LVKQYLI--RT-----PKSQKIVNLLSFLEG-------KRS 1085 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv-~I~v~~~~~~--------~I~Q~~~--~v-----~~~~Kl~~Ll~lL~~-------~k~ 1085 (1858)
|+-..+.+..+...++.|.. .|........ .|.|.+. .+ ....++.....-+-. .-+
T Consensus 476 s~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~ 555 (698)
T KOG2340|consen 476 SRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGI 555 (698)
T ss_pred HhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhhchhhcccccCce
Confidence 88888888888888877642 1222111111 1333332 12 134455555443321 457
Q ss_pred EEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccc--cCCCCCCcceEEEcCCC
Q psy15269 1086 LIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDF--IGNDFTNVEQVIIYNLP 1163 (1858)
Q Consensus 1086 IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAA--RGLDIp~V~~VINyDlP 1163 (1858)
+|+.++--.--++-..|++.++..+.+|.=-+ +.+-.++-+-|-.|+.++|+-|.=|- |--+|.+|..||-|.+|
T Consensus 556 LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYss---k~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP 632 (698)
T KOG2340|consen 556 LIYIPSYFDFVRVRNYMKKEEISFVMINEYSS---KSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPP 632 (698)
T ss_pred EEEecchhhHHHHHHHhhhhhcchHHHhhhhh---HhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCC
Confidence 99999999989999999999888888887655 66656666679999999999998664 66789999999999999
Q ss_pred CChhhhhhhc
Q psy15269 1164 LSINHYVFQI 1173 (1858)
Q Consensus 1164 ~~~e~YIHRI 1173 (1858)
.+|.-|.-=|
T Consensus 633 ~~P~FYsEii 642 (698)
T KOG2340|consen 633 NNPHFYSEII 642 (698)
T ss_pred CCcHHHHHHH
Confidence 9998886644
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=87.95 E-value=1.8 Score=58.68 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=59.7
Q ss_pred CcEEEEecChHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHHhc----CCCcEEEeccccccCCCCCC--cc
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQD-SNMMTIPMSNNGTSWSHVECLELLNLFNT----GKSSLVIMTLSDFIGNDFTN--VE 1155 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~-~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~----G~~~ILVATDVAARGLDIp~--V~ 1155 (1858)
+.++||+++.+..+.++..|.. .++. ...+|+. .|.+++++|++ ++-.||++|.....|+|+|+ ++
T Consensus 535 gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~------~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~ 607 (697)
T PRK11747 535 KGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ------PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLT 607 (697)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc------hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceE
Confidence 5699999999999999999974 3433 3446643 36778877764 67789999999999999976 78
Q ss_pred eEEEcCCCC
Q psy15269 1156 QVIIYNLPL 1164 (1858)
Q Consensus 1156 ~VINyDlP~ 1164 (1858)
+||-.-+|.
T Consensus 608 ~vII~kLPF 616 (697)
T PRK11747 608 QVIITKIPF 616 (697)
T ss_pred EEEEEcCCC
Confidence 998877774
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=87.53 E-value=1.9 Score=57.37 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=68.6
Q ss_pred HHHHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC----CCcEEEeccccc
Q psy15269 1073 IVNLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG----KSSLVIMTLSDF 1146 (1858)
Q Consensus 1073 l~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G----~~~ILVATDVAA 1146 (1858)
...+..++.. ++++|-+.+.+..+.+++.|+..---...++|+.+ .|...+++||.. .-.||++|+.+-
T Consensus 459 ~~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~-----~~~~l~~~f~~~~~~~~~~vL~gt~sfw 533 (636)
T TIGR03117 459 SLSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN-----RLASAEQQFLALYANGIQPVLIAAGGAW 533 (636)
T ss_pred HHHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc-----cHHHHHHHHHHhhcCCCCcEEEeCCccc
Confidence 4445555553 78999999999999999999763223445667553 467789999884 789999999999
Q ss_pred cCCCC----------CCcceEEEcCCCCCh
Q psy15269 1147 IGNDF----------TNVEQVIIYNLPLSI 1166 (1858)
Q Consensus 1147 RGLDI----------p~V~~VINyDlP~~~ 1166 (1858)
.|+|+ +.+++||-.-+|.-+
T Consensus 534 eGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~ 563 (636)
T TIGR03117 534 TGIDLTHKPVSPDKDNLLTDLIITCAPFGL 563 (636)
T ss_pred cccccCCccCCCCCCCcccEEEEEeCCCCc
Confidence 99999 458999988888544
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=87.32 E-value=1.8 Score=60.56 Aligned_cols=77 Identities=16% Similarity=0.252 Sum_probs=61.8
Q ss_pred CcEEEEecChHHHHHHHHHHhhCC----CeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCC--cce
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSN----MMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTN--VEQ 1156 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g----~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~--V~~ 1156 (1858)
++++||+++.+..+.+++.|+... +.+. .+| ++ ...|.+.+++|++++-.||++|+....|+|+|+ ++.
T Consensus 753 g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll-~Qg-~~---~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~ 827 (928)
T PRK08074 753 GRMLVLFTSYEMLKKTYYNLKNEEELEGYVLL-AQG-VS---SGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSC 827 (928)
T ss_pred CCEEEEECCHHHHHHHHHHHhhcccccCceEE-ecC-CC---CCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEE
Confidence 789999999999999999997542 2222 233 32 346889999999998899999999999999987 478
Q ss_pred EEEcCCCC
Q psy15269 1157 VIIYNLPL 1164 (1858)
Q Consensus 1157 VINyDlP~ 1164 (1858)
||-.-+|.
T Consensus 828 viI~kLPF 835 (928)
T PRK08074 828 LVIVRLPF 835 (928)
T ss_pred EEEecCCC
Confidence 88777775
|
|
| >KOG0924|consensus | Back alignment and domain information |
|---|
Probab=87.09 E-value=3.1 Score=54.27 Aligned_cols=128 Identities=13% Similarity=0.079 Sum_probs=84.9
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHH-hhc------CCcEEEEecChHHH----HH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLS-FLE------GKRSLIFVKTYRDA----SR 1097 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~-lL~------~~k~IIFvnTk~~a----d~ 1097 (1858)
||||. .++++.-|=+-|.+- +...+ -.++-.|...+-.+-.+..+. .+. .+-++||..-++.+ +.
T Consensus 507 SATm~--a~kf~nfFgn~p~f~-IpGRT-yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~ 582 (1042)
T KOG0924|consen 507 SATMD--AQKFSNFFGNCPQFT-IPGRT-YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDI 582 (1042)
T ss_pred ecccc--HHHHHHHhCCCceee-ecCCc-cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHH
Confidence 78875 455665554445432 21111 123334444554554444332 221 16799999766654 45
Q ss_pred HHHHHhhC------CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCC
Q psy15269 1098 IISAVQDS------NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLP 1163 (1858)
Q Consensus 1098 L~~~L~~~------g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP 1163 (1858)
+.+.|.+. ++.+..|++.++ +.-+.+++.+-..|.-+++|||++|.--|-|+++.+||...+-
T Consensus 583 i~~~l~ql~~~~~~~L~vlpiYSQLp---~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~ 651 (1042)
T KOG0924|consen 583 IKEKLEQLDSAPTTDLAVLPIYSQLP---ADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYC 651 (1042)
T ss_pred HHHHHHhhhcCCCCceEEEeehhhCc---hhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCce
Confidence 55555542 678999999999 8888888887778888899999999999999999999976553
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=86.93 E-value=2.5 Score=57.15 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=65.7
Q ss_pred CCcEEEEecChHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEc
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQD-SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIY 1160 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~-~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINy 1160 (1858)
+.++||.++|+.-+..+.+.|++ .|..+..+||+++ ..+|.+.+.+.++|+.+|+|+|--+.. +.+.++.+||=-
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s---~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvD 265 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLS---DGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVD 265 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCC---HHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEE
Confidence 46899999999999999999987 5889999999999 999999999999999999999975543 567888888843
Q ss_pred C
Q psy15269 1161 N 1161 (1858)
Q Consensus 1161 D 1161 (1858)
+
T Consensus 266 E 266 (679)
T PRK05580 266 E 266 (679)
T ss_pred C
Confidence 3
|
|
| >KOG0923|consensus | Back alignment and domain information |
|---|
Probab=86.79 E-value=3.4 Score=53.81 Aligned_cols=127 Identities=12% Similarity=0.139 Sum_probs=90.0
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhcC-------CcEEEEecChHHHHHHHHH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEG-------KRSLIFVKTYRDASRIISA 1101 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~-------~k~IIFvnTk~~ad~L~~~ 1101 (1858)
|||+..+ ++..-|=.-|++..-+ ..-.+.-+|-..|+.+-+++.+.-+.. +-+|||.--.+..+...+.
T Consensus 417 SAT~DAe--kFS~fFDdapIF~iPG--RRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~ 492 (902)
T KOG0923|consen 417 SATMDAE--KFSAFFDDAPIFRIPG--RRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKEN 492 (902)
T ss_pred ccccCHH--HHHHhccCCcEEeccC--cccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHH
Confidence 8887643 4443333456554332 222355566677777776665443221 6799999888777766666
Q ss_pred Hhh----C-----CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCC
Q psy15269 1102 VQD----S-----NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNL 1162 (1858)
Q Consensus 1102 L~~----~-----g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDl 1162 (1858)
|++ . .+-+..||.+++ +..+.++++--..|.-+|.+||++|.--|-|++|.+||.=.+
T Consensus 493 l~~~~~~LGski~eliv~PiYaNLP---selQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf 559 (902)
T KOG0923|consen 493 LKERCRRLGSKIRELIVLPIYANLP---SELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGF 559 (902)
T ss_pred HHHHHHHhccccceEEEeeccccCC---hHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcc
Confidence 653 2 344888999999 888999988888898999999999999999999999995443
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=86.45 E-value=1.8 Score=58.34 Aligned_cols=91 Identities=13% Similarity=0.142 Sum_probs=67.0
Q ss_pred CCcEEEEecChHHHHHHHHHHhhC-----CCeEEEEecCCCCc------------------cHHHHHHHHHHHhc-CCCc
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDS-----NMMTIPMSNNGTSW------------------SHVECLELLNLFNT-GKSS 1137 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~-----g~~~~~LHG~ms~~------------------~Q~eR~~~L~~Fr~-G~~~ 1137 (1858)
..|++|||.++..|..+.+.|.+. +..+..++++.+.. ....+.+++++|++ +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 378999999999999999998653 35677777765410 00123478999987 6889
Q ss_pred EEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc
Q psy15269 1138 LVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1138 ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI 1173 (1858)
|||.+|..--|.|.|.++.++=.- |-.-..++|-|
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldK-plk~h~LlQai 628 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDK-PLKYHGLLQAI 628 (667)
T ss_pred EEEEEcccccccCCCccceEEEec-cccccHHHHHH
Confidence 999999999999999999887544 43333455544
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=86.38 E-value=2.6 Score=57.02 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=62.0
Q ss_pred cCCcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccc-cCCCCCCcc
Q psy15269 1081 EGKRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDF-IGNDFTNVE 1155 (1858)
Q Consensus 1081 ~~~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAA-RGLDIp~V~ 1155 (1858)
.+.+++|.++|+.-|...++.+++ .|+++..+||+++ ..+|.+.++..++|+..|+|+|...- ..+.+.++.
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~---~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~ 385 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLK---GKERREILEAIASGEADIVIGTHALIQDDVEFHNLG 385 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCC---HHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccc
Confidence 347899999999999888777765 4799999999999 99999999999999999999997432 345566666
Q ss_pred eEE
Q psy15269 1156 QVI 1158 (1858)
Q Consensus 1156 ~VI 1158 (1858)
+||
T Consensus 386 lvV 388 (681)
T PRK10917 386 LVI 388 (681)
T ss_pred eEE
Confidence 666
|
|
| >KOG0920|consensus | Back alignment and domain information |
|---|
Probab=85.86 E-value=1.7 Score=59.24 Aligned_cols=239 Identities=12% Similarity=0.076 Sum_probs=134.9
Q ss_pred HHHHHHHhhcC----CcEEEEecChHHHHHHHHHHhhC-------CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEE
Q psy15269 1072 KIVNLLSFLEG----KRSLIFVKTYRDASRIISAVQDS-------NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVI 1140 (1858)
Q Consensus 1072 Kl~~Ll~lL~~----~k~IIFvnTk~~ad~L~~~L~~~-------g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILV 1140 (1858)
-+..|+..+.. +.+|||-........+.+.|... .+-+..+|+.|+ ..++..++++--.|.-+|++
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~---s~eQ~~VF~~pp~g~RKIIl 475 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIP---SEEQQAVFKRPPKGTRKIIL 475 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCC---hHHHHHhcCCCCCCcchhhh
Confidence 34455554443 77999999999999999999742 366888999999 77888888888889999999
Q ss_pred eccccccCCCCCCcceEEE--------cCCCCCh----hhhhhhc------cCcc-----eEEEEecCcccHHHHHHHHH
Q psy15269 1141 MTLSDFIGNDFTNVEQVII--------YNLPLSI----NHYVFQI------AGHK-----EAIAFYDPVADIGLASSLIK 1197 (1858)
Q Consensus 1141 ATDVAARGLDIp~V~~VIN--------yDlP~~~----e~YIHRI------ag~~-----~aitfvt~~~e~~~l~~Ie~ 1197 (1858)
||++|.=.|=|+||-+||. ||.-.+. +++|-|. |++| .++.+++... + ++
T Consensus 476 aTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~----~---~~ 548 (924)
T KOG0920|consen 476 ATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSR----Y---EK 548 (924)
T ss_pred hhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhh----h---hh
Confidence 9999999999999999995 4443332 4444443 3333 6888988611 1 11
Q ss_pred HHhhcCCCCCCCccccC-chhhHhhhhcHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHhhCCCCCCCCCccccccch
Q psy15269 1198 LLEYSNKHVPTHPHANG-NTLLREVSSNMIHILAIACANHIEDLNESVRSKLTSCLHVYLETLLPPSDTQGNLEHDVHNH 1276 (1858)
Q Consensus 1198 ~l~~~~q~ip~~~~~~~-~~~~kia~~rl~~il~~aa~~~ed~l~~~v~~all~ll~~ql~~lL~~~~~~~~~~~~~~~~ 1276 (1858)
.+. ...+|+....-. ...+++..-....+.+.- +..-+.-+.+.+..++..|.+ -..|...+ ..
T Consensus 549 ~~~--~~q~PEilR~pL~~l~L~iK~l~~~~~~~fL-skaldpP~~~~v~~a~~~L~~--igaL~~~e-------~L--- 613 (924)
T KOG0920|consen 549 LML--AYQLPEILRTPLEELCLHIKVLEQGSIKAFL-SKALDPPPADAVDLAIERLKQ--IGALDESE-------EL--- 613 (924)
T ss_pred ccc--ccCChHHHhChHHHhhheeeeccCCCHHHHH-HHhcCCCChHHHHHHHHHHHH--hccccCcc-------cc---
Confidence 111 022232111100 011111111111111111 111223334444444444432 11122222 11
Q ss_pred hhhhccchhhhhhhhhhhhhhHHhhccCchhHHHHHHHhccCCCcchhhhHHHHHHHHHHHH
Q psy15269 1277 TEERNLAYYLSFIYSLTSVSTVCQLLATQPWIQSLLYLLSISPSGLCKLNLLRARLLTLNLL 1338 (1858)
Q Consensus 1277 ~~E~~l~~flvf~r~~~s~~~~~~~~~~~~wi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 1338 (1858)
+.||-||.-+=.=.-...+--..+-.+=+|+.++++...+...|.+..+-.+=.+-...
T Consensus 614 ---T~LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~ 672 (924)
T KOG0920|consen 614 ---TPLGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAK 672 (924)
T ss_pred ---hHHHHHHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHH
Confidence 34565555444333333344445566677888877777777777776665544443333
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=85.03 E-value=3.2 Score=55.79 Aligned_cols=92 Identities=21% Similarity=0.309 Sum_probs=70.4
Q ss_pred HHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCe-EEEEecCCCCccHHHHHHHHHHHhcCCC-cEEEeccccccCCCC
Q psy15269 1076 LLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMM-TIPMSNNGTSWSHVECLELLNLFNTGKS-SLVIMTLSDFIGNDF 1151 (1858)
Q Consensus 1076 Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~-~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~-~ILVATDVAARGLDI 1151 (1858)
+..+++. ++++||+.+.+..+.+++.+...... ....+|+- .+...+++|+++.- .++|+|...++|+|+
T Consensus 471 i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~------~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~ 544 (654)
T COG1199 471 LREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED------EREELLEKFKASGEGLILVGGGSFWEGVDF 544 (654)
T ss_pred HHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC------cHHHHHHHHHHhcCCeEEEeeccccCcccC
Confidence 3444443 68999999999999999999987653 45556644 46689999988665 899999999999999
Q ss_pred CCc--ceEEEcCCCCC-hhhhhhhc
Q psy15269 1152 TNV--EQVIIYNLPLS-INHYVFQI 1173 (1858)
Q Consensus 1152 p~V--~~VINyDlP~~-~e~YIHRI 1173 (1858)
++= ..||-..+|.- +++.+...
T Consensus 545 ~g~~l~~vvI~~lPfp~p~dp~~~~ 569 (654)
T COG1199 545 PGDALRLVVIVGLPFPNPDDPLLKA 569 (654)
T ss_pred CCCCeeEEEEEecCCCCCCCHHHHH
Confidence 765 78888888864 55555543
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=83.87 E-value=0.27 Score=53.36 Aligned_cols=119 Identities=15% Similarity=0.093 Sum_probs=79.1
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCch-hhhhhhhhccccccccccccc--Cccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPST-AIIDIDKFVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~-q~~dl~~~v~~l~~t~~~ll~--~~~~ 946 (1858)
.+.++-|+++|+-+..+.+..+.....+ +...+.||..... +...+....++++.||.++++ ....
T Consensus 46 ~~lii~P~~~l~~q~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~ 114 (169)
T PF00270_consen 46 RVLIIVPTRALAEQQFERLRKFFSNTNV-----------RVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK 114 (169)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTTTTTS-----------SEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS
T ss_pred eEEEEeeccccccccccccccccccccc-----------ccccccccccccccccccccccccccccCcchhhccccccc
Confidence 3578999999999999888777776444 4455678876442 233333468899999999986 2211
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHH--HHHHhhhccCCCCccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKF--RAELLSAVSNAPSFDDNNVSMGVTSTQH 1024 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~--RQtLLf~~~~~~s~~~~~~s~~~~~~~~ 1024 (1858)
.+......+++||++. +...++... +..|++.+.+. .+.++.
T Consensus 115 ~~~~~~~~iViDE~h~----------l~~~~~~~~----~~~i~~~~~~~~~~~~i~~---------------------- 158 (169)
T PF00270_consen 115 INISRLSLIVIDEAHH----------LSDETFRAM----LKSILRRLKRFKNIQIILL---------------------- 158 (169)
T ss_dssp STGTTESEEEEETHHH----------HHHTTHHHH----HHHHHHHSHTTTTSEEEEE----------------------
T ss_pred cccccceeeccCcccc----------cccccHHHH----HHHHHHHhcCCCCCcEEEE----------------------
Confidence 1333356667888877 555555555 77787777543 233444
Q ss_pred ccCCCCCCcHhHHHH
Q psy15269 1025 NSTDSLFSWGDIEEE 1039 (1858)
Q Consensus 1025 ~~~eSAT~p~~I~~l 1039 (1858)
|||+++.++++
T Consensus 159 ----SAT~~~~~~~~ 169 (169)
T PF00270_consen 159 ----SATLPSNVEKL 169 (169)
T ss_dssp ----ESSSTHHHHHH
T ss_pred ----eeCCChhHhhC
Confidence 99999777764
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=83.77 E-value=4.1 Score=53.23 Aligned_cols=74 Identities=20% Similarity=0.233 Sum_probs=64.6
Q ss_pred CCcEEEEecChHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEE
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQD-SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVII 1159 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~-~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VIN 1159 (1858)
+.++||-+++..-+..+++.|++ .|..+..+||+++ ..+|.+++.+.++|+.+|+|+|-.+.. +.+.++.+||=
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~---~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIV 99 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLS---DSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIV 99 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCC---HHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEE
Confidence 36899999999999999999986 5788999999999 999999999999999999999987654 56788888884
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF13765 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2VOL_B 2FBE_B 2WL1_A 2IWG_E | Back alignment and domain information |
|---|
Probab=82.30 E-value=1.5 Score=39.11 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=19.8
Q ss_pred eEecCCCceE-EEEecCCeEEEecCCC
Q psy15269 1412 VSFDKEKCVC-CTVECGGQSLIHGPGT 1437 (1858)
Q Consensus 1412 f~~D~~~~~~-~~~~~~~~~~~~~~~~ 1437 (1858)
++|||+++|. +++++|+..|+++...
T Consensus 1 ltlDp~TAh~~L~lS~d~k~v~~~~~~ 27 (49)
T PF13765_consen 1 LTLDPNTAHPSLVLSEDGKSVRYSEQP 27 (49)
T ss_dssp -EB-TTTS-TTEEEETTSSEEEE-SST
T ss_pred CEECcccCCCCeEECCCCeEEEEccCC
Confidence 4799999999 9999999999987744
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=81.59 E-value=3.6 Score=55.21 Aligned_cols=86 Identities=15% Similarity=0.223 Sum_probs=67.0
Q ss_pred CcEEEEecChHHHHHHHHHHhhC-----CCeEEEEecCCCCccHHHHHHHHHHHh--cCCCcEEEeccccccCCCCCCcc
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDS-----NMMTIPMSNNGTSWSHVECLELLNLFN--TGKSSLVIMTLSDFIGNDFTNVE 1155 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~-----g~~~~~LHG~ms~~~Q~eR~~~L~~Fr--~G~~~ILVATDVAARGLDIp~V~ 1155 (1858)
.|+||||.+...|+++.+.|... |--+..|.|+-. +.+ ..++.|. +.--+|-|+.|+..=|+|+|.|-
T Consensus 427 ~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~---~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~ 501 (875)
T COG4096 427 GKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE---QAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVV 501 (875)
T ss_pred CceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch---hhH--HHHHHHHhcCCCCceEEehhhhhcCCCchhee
Confidence 68999999999999999999863 344778888765 443 3566674 45567999999999999999999
Q ss_pred eEEEcCCCCChhhhhhhc
Q psy15269 1156 QVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1156 ~VINyDlP~~~e~YIHRI 1173 (1858)
.+|=+-.=.+..-|-|-+
T Consensus 502 nlVF~r~VrSktkF~QMv 519 (875)
T COG4096 502 NLVFDRKVRSKTKFKQMV 519 (875)
T ss_pred eeeehhhhhhHHHHHHHh
Confidence 888666556666666655
|
|
| >KOG0943|consensus | Back alignment and domain information |
|---|
Probab=80.50 E-value=0.41 Score=63.83 Aligned_cols=131 Identities=20% Similarity=0.292 Sum_probs=86.8
Q ss_pred cCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCC--CCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeE
Q psy15269 266 AAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGH--GNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLL 343 (1858)
Q Consensus 266 ~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~--g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~V 343 (1858)
.+..++.+|.+-.+..+||..+|++|.|-....--+-. ....+...|..-...+.+.+|+..++..--.-++|++|+|
T Consensus 371 ddan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghl 450 (3015)
T KOG0943|consen 371 DDANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHL 450 (3015)
T ss_pred CCCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCch
Confidence 34456666766677788999999999998865544333 1222334455444347889999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCC--ccccccccccCC-CceEEeecCceEEEEEcCCCEEEEEeCCC
Q psy15269 344 YTWGEGDHGRLGHGDLK--SRHTPTLVTELS-DVGAVSCGESHTLVLSQDGHTVWSMGSGN 401 (1858)
Q Consensus 344 YtWG~N~~GQLG~G~~~--~~~~P~~V~~l~-~I~~IAcG~~HTlaLt~dG~tVysWG~N~ 401 (1858)
-+|=+- +|.|-.. ....-+.+..-. -+++..|...|+++...++ .+|.||---
T Consensus 451 asWlDE----cgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dn-iihWcGiVP 506 (3015)
T KOG0943|consen 451 ASWLDE----CGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDN-IIHWCGIVP 506 (3015)
T ss_pred hhHHhh----hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhc-eeeEEeeee
Confidence 999432 2222111 111122222111 1567788889999999988 699999433
|
|
| >KOG0386|consensus | Back alignment and domain information |
|---|
Probab=80.39 E-value=11 Score=51.69 Aligned_cols=99 Identities=18% Similarity=0.254 Sum_probs=83.6
Q ss_pred CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCC---cEEEeccccccCCCCCCcceEEE
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKS---SLVIMTLSDFIGNDFTNVEQVII 1159 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~---~ILVATDVAARGLDIp~V~~VIN 1159 (1858)
.+++.|+.-.+--+-+-.+|.-.++.-..+-|.-. ..+|-..++.|..-.. -.|..|-.+..|++....+.||-
T Consensus 727 HRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK---~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtvii 803 (1157)
T KOG0386|consen 727 HRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTK---VEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVII 803 (1157)
T ss_pred cchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcc---hhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEE
Confidence 78999999888889999999988999899999887 8999999999976543 35899999999999999999999
Q ss_pred cCCCCCh------hhhhhhccCcc--eEEEEec
Q psy15269 1160 YNLPLSI------NHYVFQIAGHK--EAIAFYD 1184 (1858)
Q Consensus 1160 yDlP~~~------e~YIHRIag~~--~aitfvt 1184 (1858)
||--++| .+-.|||+.+. +.+-+++
T Consensus 804 fdsdwnp~~d~qaqdrahrigq~~evRv~rl~t 836 (1157)
T KOG0386|consen 804 FDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLIT 836 (1157)
T ss_pred ecCCCCchhHHHHHHHHHHhhchhheeeeeeeh
Confidence 9999887 66778885555 4444444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1858 | ||||
| 3kci_A | 389 | The Third Rld Domain Of Herc2 Length = 389 | 1e-46 | ||
| 4d9s_A | 406 | Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv | 2e-34 | ||
| 4d9s_A | 406 | Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv | 5e-24 | ||
| 4dnv_A | 370 | Crystal Structure Of The W285f Mutant Of Uvb-Resist | 3e-34 | ||
| 4dnv_A | 370 | Crystal Structure Of The W285f Mutant Of Uvb-Resist | 5e-24 | ||
| 4dnw_A | 374 | Crystal Structure Of Uvb-Resistance Protein Uvr8 Le | 3e-34 | ||
| 4dnw_A | 374 | Crystal Structure Of Uvb-Resistance Protein Uvr8 Le | 7e-24 | ||
| 4dnu_A | 372 | Crystal Structure Of The W285a Mutant Of Uvb-Resist | 9e-34 | ||
| 4dnu_A | 372 | Crystal Structure Of The W285a Mutant Of Uvb-Resist | 4e-24 | ||
| 1a12_A | 413 | Regulator Of Chromosome Condensation (Rcc1) Of Huma | 4e-14 | ||
| 1i2m_B | 402 | Ran-Rcc1-So4 Complex Length = 402 | 8e-14 | ||
| 3of7_A | 473 | The Crystal Structure Of Prp20p From Saccharomyces | 1e-13 | ||
| 3of7_A | 473 | The Crystal Structure Of Prp20p From Saccharomyces | 9e-12 | ||
| 3mvd_K | 423 | Crystal Structure Of The Chromatin Factor Rcc1 In C | 2e-10 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 5e-08 |
| >pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 | Back alignment and structure |
|
| >pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 | Back alignment and structure |
|
| >pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 | Back alignment and structure |
|
| >pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 | Back alignment and structure |
|
| >pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 | Back alignment and structure |
|
| >pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 | Back alignment and structure |
|
| >pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 | Back alignment and structure |
|
| >pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 | Back alignment and structure |
|
| >pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 | Back alignment and structure |
|
| >pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 | Back alignment and structure |
|
| >pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 | Back alignment and structure |
|
| >pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 | Back alignment and structure |
|
| >pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 | Back alignment and structure |
|
| >pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
Score = 331 bits (851), Expect = e-102
Identities = 128/370 (34%), Positives = 179/370 (48%), Gaps = 22/370 (5%)
Query: 189 KVYTWGCNLHHQILDEVRGKCSRPRLQSLPSN--IRHIEAGQFCTFLLDSTGGLLVYGKG 246
+Y WG N Q+ K P + + G+ F + + G L G G
Sbjct: 21 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 80
Query: 247 W---LGLANTTIQPLPKRVP--LEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKL 301
LG+ T P + I ++V+ H L ++SEGEVYSWG E GKL
Sbjct: 81 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVN-SGGKHCLALSSEGEVYSWGEAEDGKL 139
Query: 302 GHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKS 361
GHGN RP++I L G V V+AG +HSA VT G LYTWG+G +GRLGH D +
Sbjct: 140 GHGNRSPCDRPRVIES-LRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSED 198
Query: 362 RHTPTLVTELSD--VGAVSC--GESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPK 417
+ P LV L V ++C G++ TL L+ D TVWS G G+ GKLG + P
Sbjct: 199 QLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDD-TVWSWGDGDYGKLGRGGSDGCKVPM 257
Query: 418 VIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSS 471
I++L V KV G+ FSVALT G V+ WG LG S P V GL
Sbjct: 258 KIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDD-HVRRPRQVQGLQG 316
Query: 472 HQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQIC 531
+++ ++ G H + ++ EVY WG N GQ G + + +P V L+ V ++
Sbjct: 317 KKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNA-IQRPRLVAALQGKKVNRVA 375
Query: 532 AGSLFSIAYT 541
GS ++A++
Sbjct: 376 CGSAHTLAWS 385
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
Score = 281 bits (720), Expect = 3e-84
Identities = 94/278 (33%), Positives = 127/278 (45%), Gaps = 16/278 (5%)
Query: 276 CSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSA 335
S L G +Y WG G+LG + P L R Q+ G
Sbjct: 8 SSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPC-EALATLRPVQLIGGEQTLF 66
Query: 336 AVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVG----AVSCGESHTLVLSQDG 391
AVT DG LY G G GRLG G +S TPTL+ + V AV+ G H L LS +G
Sbjct: 67 AVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEG 126
Query: 392 HTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG- 450
V+S G GKLGH + P+VIE+LR V V AG + S +T G ++ WG
Sbjct: 127 -EVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGK 185
Query: 451 -----LGLRSSSISFHTPVLVTGLSSHQIVDVSI--GDSHVLALSQYNEVYAWGSNTMGQ 503
LG S P LV L H++VD++ GD+ L L+ + V++WG G+
Sbjct: 186 GRYGRLGHSDSE-DQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGK 244
Query: 504 CGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYT 541
G+ P K+ L + V ++ GS FS+A T
Sbjct: 245 LGRGGSDG-CKVPMKIDSLTGLGVVKVECGSQFSVALT 281
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 1e-59
Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 15/228 (6%)
Query: 324 VTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELS--DVGAVSCGE 381
+ + G +Y WG G+LG + PT L+ + GE
Sbjct: 3 HHHHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGE 62
Query: 382 SHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKV--CAGTSFSVA 439
++ DG +++ G G G+LG T V+TP ++E+++ ++KV +G +A
Sbjct: 63 QTLFAVTADG-KLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLA 121
Query: 440 LTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEV 493
L+ +G V+ WG LG + S P ++ L ++VDV+ G +H ++ ++
Sbjct: 122 LSSEGEVYSWGEAEDGKLGHGNRSPC-DRPRVIESLRGIEVVDVAAGGAHSACVTAAGDL 180
Query: 494 YAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQI-C-AGSLFSIA 539
Y WG G+ G + + +P V L+ V I C +G ++
Sbjct: 181 YTWGKGRYGRLGHSDSED-QLKPKLVEALQGHRVVDIACGSGDAQTLC 227
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 2e-29
Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 21/194 (10%)
Query: 165 DIDSTSTPKLTYNIGD---TDISVA----HS-------KVYTWGCNLHHQILDEVRGKCS 210
D + PKL + DI+ + V++WG + ++ C
Sbjct: 195 DSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCK 254
Query: 211 RP-RLQSLPS-NIRHIEAGQFCTFLLDSTGGLLVYGKGW---LGLANTTIQPLPKRVPLE 265
P ++ SL + +E G + L +G + +GKG LG + P++V
Sbjct: 255 VPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL 314
Query: 266 AAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVT 325
++++ H + T +GEVY+WG + G+LG G T + +RP+L+ L GK+V
Sbjct: 315 QGKKVIAIA-TGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAA-LQGKKVN 372
Query: 326 QVSAGHSHSAAVTE 339
+V+ G +H+ A +
Sbjct: 373 RVACGSAHTLAWST 386
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 7e-08
Identities = 15/69 (21%), Positives = 20/69 (28%), Gaps = 1/69 (1%)
Query: 473 QIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICA 532
L +Y WG N GQ G + V P+ L + Q+
Sbjct: 2 HHHHHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAK-VKVPTPCEALATLRPVQLIG 60
Query: 533 GSLFSIAYT 541
G A T
Sbjct: 61 GEQTLFAVT 69
|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
Score = 300 bits (771), Expect = 1e-90
Identities = 90/390 (23%), Positives = 154/390 (39%), Gaps = 47/390 (12%)
Query: 189 KVYTWGCNLHHQI-LDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGW 247
V T G Q+ L E + +P L S+P ++ EAG T L +G + +G
Sbjct: 28 LVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCND 87
Query: 248 ---LGLANTT--IQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGE--HGK 300
LG + + +P +V L+ +V +S ++H +T +G V+ WG +G
Sbjct: 88 EGALGRDTSVEGSEMVPGKVELQEKVVQVS---AGDSHTAALTDDGRVFLWGSFRDNNGV 144
Query: 301 LGHGNTLS-QRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGD- 358
+G + P + V +V++G+ H +T DG LYT G G+ G+LG
Sbjct: 145 IGLLEPMKKSMVPVQVQLD---VPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPE 201
Query: 359 ----------LKSRHTPTLVT-------ELSDVGAVSCGESHTLVLSQDGHTVWSMGSGN 401
L+ P V CG T +S +G V+ G N
Sbjct: 202 LFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEG-HVYGFGLSN 260
Query: 402 LGKLGHEDTGKVTTPKVIEALR--KFRVRKVCAGTSFSVALTWDGLVFWWG------LGL 453
+LG T P+ + + + G +V + +G + G LGL
Sbjct: 261 YHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGL 320
Query: 454 RSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPV 513
+ P L++ L + + V+ G S A+++ V+AWG T Q G +
Sbjct: 321 GEGAEEKSIPTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDED-A 377
Query: 514 DQPSKVVG--LEDVCVRQICAGSLFSIAYT 541
P +++G LE+ V + +G ++
Sbjct: 378 WSPVEMMGKQLENRVVLSVSSGGQHTVLLV 407
|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
Score = 257 bits (658), Expect = 1e-75
Identities = 91/377 (24%), Positives = 149/377 (39%), Gaps = 55/377 (14%)
Query: 164 TDIDSTSTPKLTYNIGD-TDISV--AHS-------KVYTWGCNLHHQIL---DEVRGKCS 210
++ P L D H+ +VY++GCN L V G
Sbjct: 44 ENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGA-LGRDTSVEGSEM 102
Query: 211 RPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGW-----LGLANTT-IQPLPKRVPL 264
P L + + AG T L G + ++G +GL +P +V L
Sbjct: 103 VPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQL 162
Query: 265 EAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRR-----------PK 313
+ +V ++ H++ +T++G++Y+ G GE G+LG L R PK
Sbjct: 163 DVPVVKVA---SGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPK 219
Query: 314 LIM----GGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVT 369
+M G R G + A++ +G +Y +G ++ +LG +S P +T
Sbjct: 220 CVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLT 279
Query: 370 ELSDVG----AVSCGESHTLVLSQDGHTVWSMGSGNLGKLGH-EDTGKVTTPKVIEALRK 424
+ S G+ HT+ + +G +S+G G+LG E + + P +I L
Sbjct: 280 SFKNSTKSWVGFSGGQHHTVCMDSEG-KAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA 338
Query: 425 FRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFHTPVLVTG--LSSHQIVD 476
V V G S A+T DG VF WG LG +PV + G L + ++
Sbjct: 339 --VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDE-DAWSPVEMMGKQLENRVVLS 395
Query: 477 VSIGDSHVLALSQYNEV 493
VS G H + L + E
Sbjct: 396 VSSGGQHTVLLVKDKEQ 412
|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
Score = 202 bits (517), Expect = 6e-57
Identities = 69/254 (27%), Positives = 103/254 (40%), Gaps = 32/254 (12%)
Query: 310 RRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGD-LKSRHTPTLV 368
RR SH + TE GL+ T G+GD G+LG G+ + R P LV
Sbjct: 1 RRSPPA-----DAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALV 55
Query: 369 TELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVR 428
+ DV G HT+ LS+ G V+S G + G LG + + + + + + +V
Sbjct: 56 SIPEDVVQAEAGGMHTVCLSKSG-QVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVV 114
Query: 429 KVCAGTSFSVALTWDGLVFWWG--------LGLRSSSISFHTPVLVTGLSSHQIVDVSIG 480
+V AG S + ALT DG VF WG +GL PV V +V V+ G
Sbjct: 115 QVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDV--PVVKVASG 172
Query: 481 DSHVLALSQYNEVYAWGSNTMGQCG----------QDNFSNPVDQPSKVV-----GLEDV 525
+ H++ L+ ++Y G GQ G + P V+ V
Sbjct: 173 NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHV 232
Query: 526 CVRQICAGSLFSIA 539
+ G+ F+ A
Sbjct: 233 RFQDAFCGAYFTFA 246
|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
Score = 296 bits (760), Expect = 3e-89
Identities = 82/382 (21%), Positives = 138/382 (36%), Gaps = 38/382 (9%)
Query: 189 KVYTWGCNLHHQI-LDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGW 247
V G Q+ L E + R + + I AG +L +G + +G
Sbjct: 44 NVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCND 103
Query: 248 ---LGLANTT--IQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGE--HGK 300
LG + + P + L + +S ++H + +G V++WG HG
Sbjct: 104 EGALGRDTSEDGSESKPDLIDLPGKALCIS---AGDSHSACLLEDGRVFAWGSFRDSHGN 160
Query: 301 LGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLK 360
+G ++R P +M G +++G H +T G ++T G + G+LG +
Sbjct: 161 MGLTIDGNKRTPIDLMEG---TVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSER 217
Query: 361 SR-----------HTPTLVT--ELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGH 407
S PT + A+ T + +W+ G N +L H
Sbjct: 218 SISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAH 277
Query: 408 EDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFH 461
E GK I+ K +R + G +V LT D G LGL
Sbjct: 278 ETKGKEFALTPIKTELK-DIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVE 336
Query: 462 TPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVG 521
P +V L+ IV V G+ A++ ++Y+WGS Q G + + +P VV
Sbjct: 337 KPTIVKKLTEK-IVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDD-ELEPIVVVS 394
Query: 522 --LEDVCVRQICAGSLFSIAYT 541
+ + G +I
Sbjct: 395 KNTQGKHMLLASGGGQHAIFLV 416
|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
Score = 251 bits (644), Expect = 1e-73
Identities = 76/361 (21%), Positives = 134/361 (37%), Gaps = 46/361 (12%)
Query: 167 DSTSTPKLTYNIGDTDI-SVA----HS-------KVYTWGCNLHHQ--ILDEVRGKCSRP 212
D +L+ G D ++ H+ +Y++GCN G S+P
Sbjct: 61 DILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKP 120
Query: 213 RLQSLPSNIRHIEAGQFCTFLLDSTG-----GLLVYGKGWLGLANTTIQPLPKRVPLEAA 267
L LP I AG + L G G G +GL + P +
Sbjct: 121 DLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTV 180
Query: 268 IVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIM----------G 317
S++ H++ +T+ G+V++ G E G+LG + S
Sbjct: 181 CCSIA---SGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLI 237
Query: 318 GLYGKRVTQVSAGHSHSAAVT-EDGLLYTWGEGDHGRLGHGDLKSRHTPTLV-TELSDVG 375
K + A + + + +++ G + +L H T + TEL D+
Sbjct: 238 ITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIR 297
Query: 376 AVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDT-GKVTTPKVIEALRKFRVRKVCAGT 434
++ G+ HT++L+ D +G G+LG D V P +++ L + ++ V G
Sbjct: 298 HIAGGQHHTVILTTDL-KCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGE 355
Query: 435 SFSVALTWDGLVFWWG------LGLRSSSISFHTPVLVTG--LSSHQIVDVSIGDSHVLA 486
S A+T DG ++ WG LG+ P++V ++ S G H +
Sbjct: 356 VCSYAVTIDGKLYSWGSGVNNQLGVGDGD-DELEPIVVVSKNTQGKHMLLASGGGQHAIF 414
Query: 487 L 487
L
Sbjct: 415 L 415
|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
Score = 251 bits (642), Expect = 2e-73
Identities = 69/319 (21%), Positives = 110/319 (34%), Gaps = 33/319 (10%)
Query: 245 KGWLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHG 304
L N ++ P +A ++ T G V G G+ G+LG G
Sbjct: 3 PRRKALTNNNNAGEAEQQPPKAKRARIA---FHLELPKRRTVLGNVLVCGNGDVGQLGLG 59
Query: 305 NTLSQR-RPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLK--S 361
+ +R R + G +SAG H+ +T+ G +Y++G D G LG + S
Sbjct: 60 EDILERKRLSPVAGI---PDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGS 116
Query: 362 RHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSG--NLGKLGHEDTGKVTTPKVI 419
P L+ +S G+SH+ L +DG V++ GS + G +G G TP +
Sbjct: 117 ESKPDLIDLPGKALCISAGDSHSACLLEDG-RVFAWGSFRDSHGNMGLTIDGNKRTPIDL 175
Query: 420 EALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGL----------RSSSISFHTP 463
+ +G V LT G VF G LG R P
Sbjct: 176 MEGTV--CCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRP 233
Query: 464 VLVTGLSSHQIVDVSIGDSHVLAL-SQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGL 522
+ + + + SQ ++A G N Q + L
Sbjct: 234 TQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTEL 293
Query: 523 EDVCVRQICAGSLFSIAYT 541
+D+ I G ++ T
Sbjct: 294 KDIR--HIAGGQHHTVILT 310
|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 1e-56
Identities = 63/323 (19%), Positives = 113/323 (34%), Gaps = 42/323 (13%)
Query: 154 LGDRKSSNSNTDIDSTSTPKLTYNIGDTDISVA----HS-------KVYTWGCNLHH--Q 200
LG S + S S P L G + ++ HS +V+ WG
Sbjct: 107 LGRDTSEDG-----SESKPDLIDLPGKA-LCISAGDSHSACLLEDGRVFAWGSFRDSHGN 160
Query: 201 ILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGW---LGLANTT--- 254
+ + G P + I +G +L + G + G LG +
Sbjct: 161 MGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSIS 220
Query: 255 --------IQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSE-GEVYSWGVGEHGKLGHGN 305
P ++ + A ++ + S+ +++ G+ +L H
Sbjct: 221 GEGRRGKRDLLRPTQLIITRAKPFEAIW-ATNYCTFMRESQTQVIWATGLNNFKQLAHET 279
Query: 306 TLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRH-T 364
+ I K + ++ G H+ +T D G ++GRLG GD+K
Sbjct: 280 KGKEFALTPIKTE--LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEK 337
Query: 365 PTLVTEL-SDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIE--A 421
PT+V +L + +V CGE + ++ DG ++S GSG +LG D P V+
Sbjct: 338 PTIVKKLTEKIVSVGCGEVCSYAVTIDG-KLYSWGSGVNNQLGVGDGDDELEPIVVVSKN 396
Query: 422 LRKFRVRKVCAGTSFSVALTWDG 444
+ + G ++ L
Sbjct: 397 TQGKHMLLASGGGQHAIFLVKAD 419
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 | Back alignment and structure |
|---|
Score = 283 bits (727), Expect = 5e-85
Identities = 87/362 (24%), Positives = 151/362 (41%), Gaps = 34/362 (9%)
Query: 165 DIDSTSTPKLTYNIGDTDI-SVA----HS--------KVYTWGCNLHHQILDEVRGKCSR 211
D + +P + I SV H+ +VY+WG ++
Sbjct: 52 DAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFT 111
Query: 212 PRLQSLPS--NIRHIEAGQFCTFLLDSTGGLLVYGKGW---LGLANTTIQPLPKRVPLEA 266
P I+ I G + G + +G+ LGL +T +P+++
Sbjct: 112 PLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE 171
Query: 267 AIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQ 326
I V+ H VT +G++Y WG G +G LG G+ + P+ + G++++
Sbjct: 172 GIRIKMVA-AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTS-TGGEKMSM 229
Query: 327 VSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVG--AVSCGESHT 384
V+ G H+ +V+ G LYT+G +G+LGHGDL+ P + LS+ +S G HT
Sbjct: 230 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHT 289
Query: 385 LVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDG 444
+ L+ DG ++ G G++G + +P + +V +V G ++A+T
Sbjct: 290 MALTSDG-KLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERN 348
Query: 445 LVFWWG------LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGS 498
VF WG LG+ S + P ++ LS VD + G + + +W S
Sbjct: 349 NVFAWGRGTNGQLGIGESV-DRNFPKIIEALS----VDGASGQHIESSNIDPSSGKSWVS 403
Query: 499 NT 500
Sbjct: 404 PA 405
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 | Back alignment and structure |
|---|
Score = 237 bits (608), Expect = 5e-69
Identities = 70/244 (28%), Positives = 120/244 (49%), Gaps = 13/244 (5%)
Query: 304 GNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRH 363
G ++ ++V +SAG SHS A+ ++ +WG G+ G+LGHGD + R
Sbjct: 1 GMAEDMAADEVT---APPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP 57
Query: 364 TPTLVTELS--DVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEA 421
+PT ++ L + +V+CG HT+ SQ G V+S G G+ G+LGH ++ + TP I+A
Sbjct: 58 SPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKA 117
Query: 422 LRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSSHQIV 475
L R++++ G S +A+T +G V WG LGL + P + +I
Sbjct: 118 LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTE-DSLVPQKIQAFEGIRIK 176
Query: 476 DVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSL 535
V+ G H A+++ ++Y WG G G + ++ P +V + + G
Sbjct: 177 MVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTD-RLVPERVTSTGGEKMSMVACGWR 235
Query: 536 FSIA 539
+I+
Sbjct: 236 HTIS 239
|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 | Back alignment and structure |
|---|
Score = 284 bits (728), Expect = 3e-84
Identities = 87/428 (20%), Positives = 156/428 (36%), Gaps = 74/428 (17%)
Query: 189 KVYTWGCNLHHQI---LDEVRGKCSRPR----LQSLPSNIRHIEAGQFCTFLLDSTGGLL 241
++ WG ++ + RPR L + I G T LD +
Sbjct: 30 DIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVW 89
Query: 242 VYG---KGWLGLANTT-----------------------IQPLPKRVPLEAAIVSLSVSK 275
+G G LG + ++ P ++P E+ K
Sbjct: 90 SWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHK 149
Query: 276 -----CSEAHVLTVTSEGEVYSWGVGE--HGKLGHGN--TLSQRRPKLIMGGLYGKRVTQ 326
++ + S GEVY+WG G LG Q+ P + + Q
Sbjct: 150 VVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPT-FSKYNIVQ 208
Query: 327 VSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTE---LSDVGAVSCGESH 383
++ G H + E+G+++ WG G +LG ++ TL L V ++ GE+H
Sbjct: 209 LAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENH 268
Query: 384 TLVLSQDGHTVWSMGSGNLGKLGH----EDTGKVTTPKVIEALRKFRVRKVCAGTSFSVA 439
L++D + S G G+ G ED VT PK + +R + AG S+
Sbjct: 269 CFALTKDN-KLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLI 327
Query: 440 LTWDGLVFWWG------LGLRSSSISFH-------------TPVLVTGLSSHQIVDVSIG 480
L+ DG ++ G +G+ ++ + P + + + V+ G
Sbjct: 328 LSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAG 385
Query: 481 DSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVG--LEDVCVRQICAGSLFSI 538
H +A++Q Y+WG G F + + P+++ +D + + G FS+
Sbjct: 386 SHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSV 445
Query: 539 AYTVPPSN 546
+ V S+
Sbjct: 446 SGGVKLSD 453
|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 3e-62
Identities = 63/371 (16%), Positives = 123/371 (33%), Gaps = 99/371 (26%)
Query: 219 SNIRHIEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVSKCSE 278
S+I + +
Sbjct: 10 SHIINAQED--------------------------------------------------Y 19
Query: 279 AHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQ---RRPKLI-MGGLYGKRVTQVSAGHSHS 334
H+ +++ WG G +LG G +RP+L ++ + G H+
Sbjct: 20 KHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHT 79
Query: 335 AAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSD--------------------- 373
A+ E+ +++WG D G LG ++ +
Sbjct: 80 LALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRE 139
Query: 374 ----------VGAVSCGESHTLVLSQDGHTVWSMGSG--NLGKLGH--EDTGKVTTPKVI 419
V ++ ++ + L +G V++ G+ N G LG + TP +
Sbjct: 140 SFPPLAEGHKVVQLAATDNMSCALFSNG-EVYAWGTFRCNEGILGFYQDKIKIQKTPWKV 198
Query: 420 EALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSSHQ 473
K+ + ++ G + L +G+VF WG LG + +
Sbjct: 199 PTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRH 258
Query: 474 IVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSN---PVDQPSKVVGLEDVCVRQI 530
+ ++ G++H AL++ N++ +WG N GQCG V +P ++ ++V +R I
Sbjct: 259 VKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSI 318
Query: 531 CAGSLFSIAYT 541
AG S+ +
Sbjct: 319 AAGEHHSLILS 329
|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 8e-56
Identities = 57/266 (21%), Positives = 93/266 (34%), Gaps = 48/266 (18%)
Query: 320 YGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKS-------RHTPTLVTELS 372
+ + + H + ++ WG G LG G L R P L + +
Sbjct: 8 HMSHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEA 67
Query: 373 DVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEA----------- 421
+ + + G HTL L ++ VWS G ++G LG + + K ++A
Sbjct: 68 KIISFAVGGMHTLALDEES-NVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDL 126
Query: 422 ------------------LRKFRVRKVCAGTSFSVALTWDGLVFWWG--------LGLRS 455
+V ++ A + S AL +G V+ WG LG
Sbjct: 127 NELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQ 186
Query: 456 SSISFH-TPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVD 514
I TP V S + IV ++ G H+L L + V+AWG+ Q G
Sbjct: 187 DKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLG-RKVMERFR 245
Query: 515 QPSKVVGLEDV-CVRQICAGSLFSIA 539
+ + V+ I +G A
Sbjct: 246 LKTLDPRPFGLRHVKYIASGENHCFA 271
|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 6e-31
Identities = 38/220 (17%), Positives = 71/220 (32%), Gaps = 43/220 (19%)
Query: 364 TPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGH---EDTGKVTTPKVIE 420
+S + H + Q ++ G+G++ +LG +V P++
Sbjct: 2 GHHHHHHMSHIINAQEDYKHMYLSVQPL-DIFCWGTGSMCELGLGPLAKNKEVKRPRLNP 60
Query: 421 ALRKF--RVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFH----------- 461
L + ++ G ++AL + V+ WG LG +S+
Sbjct: 61 FLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSD 120
Query: 462 -----------TPVLVTGLSS------HQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQC 504
TP + S H++V ++ D+ AL EVYAWG+ +
Sbjct: 121 DEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEG 180
Query: 505 G---QDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYT 541
+ P KV + Q+ G +
Sbjct: 181 ILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLD 220
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 1e-42
Identities = 60/290 (20%), Positives = 98/290 (33%), Gaps = 64/290 (22%)
Query: 252 NTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRR 311
N ++ + +++ H L + G+V WG +G+L
Sbjct: 10 NNDWGEATVPAEAQSGVDAIA---GGYFHGLALKG-GKVLGWGANLNGQLTMPAATQ--- 62
Query: 312 PKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTEL 371
V ++AG+ HS A+ DG + WG + G+
Sbjct: 63 ----------SGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVP----------AEAR 101
Query: 372 SDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVC 431
S V A++ G + L +DG V + G + G+ + V +
Sbjct: 102 SGVDAIAAGAWASYAL-KDG-KVIAWGDDSDGQTTVPAEAQS------------GVTALD 147
Query: 432 AGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYN 491
G ++A+ +G V WG + T V S + DV+ G H LAL
Sbjct: 148 GGVYTALAVK-NGGVIAWG-----DNYFGQTTVPAEAQSG--VDDVAGGIFHSLALKD-G 198
Query: 492 EVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYT 541
+V AWG N Q P + S V I +G +S+A
Sbjct: 199 KVIAWGDNRYKQTT-----VPTEALSGVS--------AIASGEWYSLALK 235
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 2e-41
Identities = 70/319 (21%), Positives = 106/319 (33%), Gaps = 74/319 (23%)
Query: 190 VYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYG---KG 246
V WG N G+ + P S + I G F L G +L +G G
Sbjct: 4 VVAWGGNNDW-------GEATVP--AEAQSGVDAIAGGYFHGLALKG-GKVLGWGANLNG 53
Query: 247 WLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNT 306
L + T ++ + +++ H L + GEV +WG E G+
Sbjct: 54 QLTMPAAT----------QSGVDAIA---AGNYHSLALKD-GEVIAWGGNEDGQTTVPAE 99
Query: 307 LSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPT 366
V ++AG S A+ DG + WG+ G+
Sbjct: 100 A-------------RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVP--------- 136
Query: 367 LVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFR 426
S V A+ G L + +G V + G G+ + A +
Sbjct: 137 -AEAQSGVTALDGGVYTALAVK-NG-GVIAWGDNYFGQTT------------VPAEAQSG 181
Query: 427 VRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLA 486
V V G S+AL DG V WG T V LS + ++ G+ + LA
Sbjct: 182 VDDVAGGIFHSLALK-DGKVIAWGDNRYKQ-----TTVPTEALSG--VSAIASGEWYSLA 233
Query: 487 LSQYNEVYAWGSNTMGQCG 505
L +V AWGS+
Sbjct: 234 LKN-GKVIAWGSSRTAPSS 251
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 3e-37
Identities = 58/252 (23%), Positives = 80/252 (31%), Gaps = 59/252 (23%)
Query: 288 GEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWG 347
V +WG G P G V ++ G+ H A+ G + WG
Sbjct: 2 TSVVAWGGNNDW--GEATV-----PAEAQSG-----VDAIAGGYFHGLALK-GGKVLGWG 48
Query: 348 EGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGH 407
+G+L S V A++ G H+L L DG V + G G+
Sbjct: 49 ANLNGQLTMP----------AATQSGVDAIAAGNYHSLALK-DG-EVIAWGGNEDGQTT- 95
Query: 408 EDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVT 467
+ A + V + AG S AL DG V WG T V
Sbjct: 96 -----------VPAEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQ-----TTVPAE 138
Query: 468 GLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCV 527
S + + G LA+ V AWG N GQ P + S V
Sbjct: 139 AQS--GVTALDGGVYTALAVKN-GGVIAWGDNYFGQTT-----VPAEAQSGVD------- 183
Query: 528 RQICAGSLFSIA 539
+ G S+A
Sbjct: 184 -DVAGGIFHSLA 194
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 2e-31
Identities = 54/300 (18%), Positives = 96/300 (32%), Gaps = 72/300 (24%)
Query: 189 KVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGWL 248
KV WG NL+ G+ + P + S + I AG + + L G ++ +G
Sbjct: 43 KVLGWGANLN--------GQLTMP--AATQSGVDAIAAGNYHSLALKD-GEVIAWGGNED 91
Query: 249 GLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLS 308
G Q + + +++ + G+V +WG G+
Sbjct: 92 G------Q-TTVPAEARSGVDAIA---AGAWASYALKD-GKVIAWGDDSDGQTTVPAEA- 139
Query: 309 QRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLV 368
VT + G ++A ++G + WG+ G+
Sbjct: 140 ------------QSGVTALDGG-VYTALAVKNGGVIAWGDNYFGQT----------TVPA 176
Query: 369 TELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVR 428
S V V+ G H+L L DG V + G + V
Sbjct: 177 EAQSGVDDVAGGIFHSLALK-DG-KVIAWGDNRYKQTTVPTEALSG------------VS 222
Query: 429 KVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALS 488
+ +G +S+AL +G V WG + + + S + + G + AL
Sbjct: 223 AIASGEWYSLALK-NGKVIAWGSSRTAP----------SSVQSG-VSSIEAGPNAAYALK 270
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 5e-23
Identities = 31/203 (15%), Positives = 63/203 (31%), Gaps = 50/203 (24%)
Query: 189 KVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGWL 248
KV WG + G+ + P S + ++ G + T L GG++ +G +
Sbjct: 121 KVIAWGDDSD--------GQTTVP--AEAQSGVTALDGGVY-TALAVKNGGVIAWGDNYF 169
Query: 249 GLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLS 308
G ++ + ++ H L + G+V +WG + +
Sbjct: 170 G-------QTTVPAEAQSGVDDVA---GGIFHSLALKD-GKVIAWGDNRYKQTTVPTEA- 217
Query: 309 QRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLV 368
V+ +++G +S A+ +G + WG
Sbjct: 218 ------------LSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ----------- 253
Query: 369 TELSDVGAVSCGESHTLVLSQDG 391
S V ++ G + L
Sbjct: 254 ---SGVSSIEAGPNAAYALKGGS 273
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 7e-11
Identities = 24/162 (14%), Positives = 46/162 (28%), Gaps = 44/162 (27%)
Query: 190 VYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGWLG 249
V WG N Q S + + G F + L G ++ +G
Sbjct: 161 VIAWGDNYFGQTTVPAEA----------QSGVDDVAGGIFHSLALKD-GKVIAWGDNRYK 209
Query: 250 LANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQ 309
+ + +++ E + L + + G+V +WG +
Sbjct: 210 -------QTTVPTEALSGVSAIA---SGEWYSLALKN-GKVIAWGSSRTAPSSVQSG--- 255
Query: 310 RRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDH 351
V+ + AG + + A+ G G H
Sbjct: 256 --------------VSSIEAGPNAAYALKGGS-----GSGHH 278
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 107 bits (267), Expect = 3e-23
Identities = 119/677 (17%), Positives = 215/677 (31%), Gaps = 207/677 (30%)
Query: 636 VDMETSPEIETLLTDCLAIGASLLLPPVVEQL------DLLKTLLSQ---DHPLS----- 681
+D ET E + D L++ V+ D+ K++LS+ DH +
Sbjct: 7 MDFETG-EHQYQYKDILSV----FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 682 NGQRMLLGVITSSLHKNEELAHIFYFDQNQDTNILMLEDLLKISCR------KSYAYTLT 735
+G L + L K EE+ F ++ N L +K R + Y
Sbjct: 62 SGTLRLFWTL---LSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 736 HFQSNACKVSP----QETPVSQVVTLLQSLIITQYVVKH-------SEICEEVYQHYLDI 784
++ + + P ++ L L + V+ + + +V Y
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY--- 174
Query: 785 VFPHVIDILERSIAWVNQGKD------IEVLNELLYN-SLAGKILFSIVHSLLINIHRSM 837
V ++ I W+N +E+L +LLY ++ + IH S+
Sbjct: 175 ---KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SI 230
Query: 838 YPTLRYFLAILPLLDSL-------------------------------NQLLPMQGNYTE 866
LR L P + L + L +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 867 TNSFLWLIDMERALALLIGKTLG---DMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAI 923
+ + + +LL+ K L L P E T + + S+++
Sbjct: 291 LDHHSMTLTPDEVKSLLL-KYLDCRPQDL--PREVL----TTNPRRLSIIAE-------- 335
Query: 924 IDIDKFVRDMRHVSNNILMSPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPRE- 982
+RD +N + D + ++ S L L P E
Sbjct: 336 -----SIRDGLATWDNWK---HVNCD-------------KLTTIIESSL---NVLEPAEY 371
Query: 983 KTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNI 1042
+ + ++ SV F ++ + S + W D+ +
Sbjct: 372 RKMFDR-LSV---FP-------------PSAHIPTILLSL-------I--WFDVIKS--- 402
Query: 1043 EVEDPIMKLVKPSSVHLVKQYLIRTPKSQKI------VNLLSFLEGKRSL--IFVKTYRD 1094
+V + KL K S LV+ + PK I + L LE + +L V Y
Sbjct: 403 DVMVVVNKLHKYS---LVE----KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN- 454
Query: 1095 ASRIISAVQDSNMMTIPMSNNGTSWSHV-------ECLELLNLFNTGKSSLVIMTLSDFI 1147
I DS+ + P + +SH+ E E + LF M DF
Sbjct: 455 ----IPKTFDSDDLIPP-YLDQYFYSHIGHHLKNIEHPERMTLFR--------MVFLDF- 500
Query: 1148 GNDFTNVEQVIIY-----NLPLSINHYVFQIAGHKEAIAFYDPVADIGLASSLIKLLEYS 1202
F +EQ I + N SI + + Q+ +K I DP + L ++++ L
Sbjct: 501 --RF--LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE-RLVNAILDFLPKI 555
Query: 1203 NKHVPTHPHANGNTLLR 1219
+++ + + LLR
Sbjct: 556 EENLICSKYTD---LLR 569
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 94.5 bits (234), Expect = 2e-19
Identities = 95/550 (17%), Positives = 175/550 (31%), Gaps = 157/550 (28%)
Query: 549 LSSAFTPLCVDVRPHTFTLIREFLEQYSACFETGDYIPFCSK--VTHAQFILLL---LRL 603
L S T R ++EQ + F +K V+ Q L L L
Sbjct: 94 LMSPIKTEQRQPSMMT----RMYIEQRDRLYNDNQ--VF-AKYNVSRLQPYLKLRQALLE 146
Query: 604 LSSHLYLALIGARSS--SVLGNETAALRHVLFKL------VDM--ETSPE--IETLLTDC 651
L + + G S + + + V K+ +++ SPE +E L
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 652 LAIGASLLLPPVVEQLDLLKTLLSQDHPLSNGQRMLLGVITSSLHKN--------EELAH 703
I P + D + + H + R LL S ++N +
Sbjct: 207 YQID-----PNWTSRSDHSSNIKLRIHSIQAELRRLL---KSKPYENCLLVLLNVQNAKA 258
Query: 704 IFYFDQN-------QDTNILMLEDLLKISCRK-----SYAYTLTHFQS------------ 739
F+ + + + D L + ++ TLT +
Sbjct: 259 WNAFNLSCKILLTTRFKQVT---DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 740 -----NACKVSPQETPVSQVVTLLQSLIIT----QYVV--KHSEICE---------EVYQ 779
+P+ +S + ++ + T ++V K + I E E +
Sbjct: 316 QDLPREVLTTNPRR--LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 780 HYLDI-VFPHVIDILER--SIAWVNQGKD--IEVLNELLYNSLAGK----ILFSIVHSLL 830
+ + VFP I S+ W + K + V+N+L SL K SI S+
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PSIY 432
Query: 831 I----------NIHRSM---YPTLRYFLAILPLLDSLNQLLPMQGNYTETNSFLW----- 872
+ +HRS+ Y + F DS + + P Y F
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTF-------DSDDLIPPYLDQY-----FYSHIGHH 480
Query: 873 LIDMERA-LALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVR 931
L ++E L D +L+ + A I ++
Sbjct: 481 LKNIEHPERMTLFRMVFLDF--------------RFLEQKIRHDST-AWNASGSILNTLQ 525
Query: 932 DMR----HVSNNILMSPNYESDVNKYSVLLKYIPQQYKNLVYS-YL-IQQTALSPREKTV 985
++ ++ +N P YE VN +L ++P+ +NL+ S Y + + AL ++ +
Sbjct: 526 QLKFYKPYICDN---DPKYERLVNA---ILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Query: 986 LEQIFSVVNK 995
E+ V +
Sbjct: 580 FEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 6e-11
Identities = 108/765 (14%), Positives = 205/765 (26%), Gaps = 277/765 (36%)
Query: 925 DI-----DKFVRDM--RHVSN------------NILMSPNYESDVNKYSVLLKYIPQQYK 965
DI D FV + + V + +I+MS + V+ L + + +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD---AVSGTLRLFWTLLSKQE 76
Query: 966 NLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025
+V ++ + VL + KF + PS + Q +
Sbjct: 77 EMVQKFV----------EEVLRINY----KFLMSPIKTEQRQPSMM-----TRMYIEQRD 117
Query: 1026 STDSLFSWGDIEEES--NIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEGK 1083
+ D + + N+ P +KL +Q L+ ++ ++ ++G
Sbjct: 118 RL-----YNDNQVFAKYNVSRLQPYLKL---------RQALLELRPAKNVL-----IDG- 157
Query: 1084 RSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL 1143
+ G+ GK+ + +
Sbjct: 158 ------------------------VL------GS----------------GKTWVALDVC 171
Query: 1144 SDF--------------IGNDFTNVEQVIIY-NLPLSINHYVFQIAGHKEAIAFYDPVAD 1188
+ + N + + + L I+ + H I +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI----KLRI 227
Query: 1189 IGLASSLIKLLEYSNKHVPTHPHANGNTLLREVSSNMIHILAIACANHIEDLNESVRSKL 1248
+ + L +LL+ + P+ N +L V + A N S + L
Sbjct: 228 HSIQAELRRLLK-------SKPYENCLLVLLNVQN----------AKAWNAFNLSCKILL 270
Query: 1249 TSCLHVYLETLLPPSDTQGNLEHDVHNHTEERNLAYYLSFIYSLTSVSTVCQLLATQPWI 1308
T+ + L + T +L+H T + LL +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-----------------SLLLK--Y- 310
Query: 1309 QSLLYLLSISPSGL----CKLNLLRARLLTLNLLTAILPHAQQGELGIITELLTQLSHNM 1364
L P L N R L II E +
Sbjct: 311 ------LDCRPQDLPREVLTTNPRR--------------------LSIIAESIRD-GLAT 343
Query: 1365 WKVPRTVAHHNALKKEEELDKQIEHLYCPPPSGTSNASRQGY---------VDI------ 1409
W H N K ++ + L R+ + I
Sbjct: 344 WD---NWKHVNCDKLTTIIESSLNVL-------EPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 1410 ----DSVSFDKEKCVCCTVECGGQSLIHGPGTRGYGVANIGITRGCYQ-WKFLIVNE--- 1461
D + D V + SL+ I I Y K + NE
Sbjct: 394 LIWFDVIKSDVMVVVN---KLHKYSLVEKQPKEST----ISI-PSIYLELKVKLENEYAL 445
Query: 1462 HKGNEGTCIGVTRWPIRDYNHRTTG----DMWLYRAYSGNVYH--SGEQTTMLPSFTQGD 1515
H+ + + P + ++ D + Y ++ G +H + E + F
Sbjct: 446 HR----SIVDHYNIP-KTFDSDDLIPPYLDQYFY-SHIG--HHLKNIEHPERMTLFRM-- 495
Query: 1516 YITVVLDMD-------AQTLSFGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNANGEKVK- 1567
V LD + ++ +G + Q L Y + + V
Sbjct: 496 ---VFLDFRFLEQKIRHDSTAWNASGSILNT-LQQLK----FYKPYICDNDPKYERLVNA 547
Query: 1568 ITD-MTVCETPRDLLCGEPYCAPVPI-LMVES---YISLLRQLHK 1607
I D + E +L+C Y + I LM E + +Q+ +
Sbjct: 548 ILDFLPKIEE--NLICS-KYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 2e-10
Identities = 102/706 (14%), Positives = 196/706 (27%), Gaps = 235/706 (33%)
Query: 75 VSTFLRQTVTSTSPKADKTVQSS---LRSRVPLTKSLP-PYNAALNLLEEVLRPATHYQV 130
V + ++ + D + S + L +EEVLR +Y+
Sbjct: 38 VQDMPKSILSKE--EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI--NYK- 92
Query: 131 DLIRSACLVYLILVTLADDNIKPLGDRKSSNSNTDIDSTSTPKLT-YNIGDTDISVAHSK 189
++ + + +P + D YN+
Sbjct: 93 ----------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV----------- 131
Query: 190 VYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGWLG 249
RLQ +R L +L+ G G
Sbjct: 132 ----------------------SRLQPY-LKLRQ------ALLELRPAKNVLIDGVLGSG 162
Query: 250 LANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQ 309
K +++ C V + +++ W L N
Sbjct: 163 ----------KTW--------VALDVCLSYKVQCK-MDFKIF-W-------LNLKN---C 192
Query: 310 RRPKLIMG---GLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPT 366
P+ ++ L + ++ HS+ + L + + RL LKS+
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK---LRIHSIQAELRRL----LKSKPYEN 245
Query: 367 --LVTELSDVG--------AVSCGESHTLVLSQDGHTVWSMGSGNLGK--LGHEDTGKVT 414
LV L +V +SC L+ ++ + + L H +T
Sbjct: 246 CLLV--LLNVQNAKAWNAFNLSC---KILLTTRFKQVTDFLSAATTTHISLDHHSMT-LT 299
Query: 415 TPKVIEALRKF---RV----RKVCAGTSFSVAL----------TWDGLVFWWGLGLRSSS 457
+V L K+ R R+V +++ TWD W +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD---NW----KHVNC 352
Query: 458 ISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPS 517
T I++ S+ +VL ++Y +++ + F P+
Sbjct: 353 DKLTT-----------IIESSL---NVLEPAEYRKMFD-------RLSV--FPPSAHIPT 389
Query: 518 KVVGL-----EDVCVRQI----CAGSL-----FSIAYTVPPSNSALSSAFTPLCVDVRPH 563
++ L V + SL ++P + ++++
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-----------SIYLELKVK 438
Query: 564 T---FTLIREFLEQYSA--CFETGDYIP------FCSKVTHAQFILLLLRLLSSHLYLAL 612
+ L R ++ Y+ F++ D IP F S + H HL
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-------------HLKNIE 485
Query: 613 IGARSSSVLGNETAALRHVLFKLVDMETSPEIETLLTDCLAIGASLLLPPVVEQLDLLKT 672
R V +E + + D A AS + ++QL K
Sbjct: 486 --------HPERMTLFRMVFLDFRFLE-----QKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 673 LLSQDHPLSNGQRMLLGVITSSLHKNEELAHIFYFDQNQDTNILML 718
+ + P L+ I L K EE ++ T++L +
Sbjct: 533 YICDNDPKYE---RLVNAILDFLPKIEENLIC-----SKYTDLLRI 570
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 9e-05
Identities = 86/682 (12%), Positives = 169/682 (24%), Gaps = 226/682 (33%)
Query: 1235 NHIEDLNESVRSKLTSCLHVYLETLLPPSDTQGNLEHDVHNHTEERNLAYYLSFIYSLTS 1294
++D+ +S+ SK H+ + + + L +
Sbjct: 36 KDVQDMPKSILSK-EEIDHIIMS---KDAVSG----------------TLRLFWTLLSKQ 75
Query: 1295 VSTVCQLLATQ-----PWIQSLLYLLSISPSGLCKLNLLRARLLTLNLLTAILPHAQQGE 1349
V + + ++ S + PS
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM---------------------------- 107
Query: 1350 LGIITELLTQLSHNMWKVPRTVAHHNALKKEEELDKQIEHLYCPPPSGTSNASRQGYVDI 1409
+T + + ++ + A +N + + + K + L V
Sbjct: 108 ---MTRMYIEQRDRLYNDNQVFAKYN-VSRLQPYLKLRQALL--------ELRPAKNV-- 153
Query: 1410 DSVSFDKEKCVCCTVECGGQSLIHGPGTRGYG----VANIGITRGCYQWKFLIVNEHK-- 1463
LI G G G ++ C +K + K
Sbjct: 154 ---------------------LIDGVL--GSGKTWVALDV-----CLSYKVQCKMDFKIF 185
Query: 1464 ----GNEGTCIGVTRWPIRDYNHRTTGDMWLYRAYSGNVYHSGEQTTMLPS--FTQGDYI 1517
N + V ++ ++ + +S N+ Y
Sbjct: 186 WLNLKNCNSPETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 1518 T--VVLD-------MDA-----QTL---------SFGKNGEEPHLAFQDLDTSAPLYPIV 1554
+VL +A + L F H++ +
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT------- 297
Query: 1555 LFYSTNANGEKVKITDMTVCETPRDLLCGEPYCAPVPILMVESYIS-LLRQ-LHKIDRWK 1612
+K D + PR++L P S I+ +R L D WK
Sbjct: 298 -LTPDEVKSLLLKYLDCRPQDLPREVLTTNP--------RRLSIIAESIRDGLATWDNWK 348
Query: 1613 AHVNQCLLDRLSVIKELTAAAEEDNASAFVPQADKGR---LVL--EEAQ--MELLCREVW 1665
HVN D+L+ I E + E P + L + A LL +W
Sbjct: 349 -HVN---CDKLTTIIESSLNVLE-------PAEYRKMFDRLSVFPPSAHIPTILLSL-IW 396
Query: 1666 PALVVMGGGDDGLRMGGKCVEKPSGRVGTLLGTLKEGIAKVKDLNFDEIDLPRDYSQQLL 1725
++ D + + K + + KE + + + + + + L
Sbjct: 397 FDVIK----SDVMVVVNKLHKY-----SLVEKQPKESTISIPSIYLE-LKVKLENEYALH 446
Query: 1726 RASVQGHRLVSQQQLWDFNPLDASS----------SQTRRSRLVAMF------------- 1762
R+ V + + D P + +F
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 1763 ---SGNQESAR----------------LTRSHPVL-RSVG-LSSPLPKFEELSLDSEYCT 1801
+A + + P R V + LPK EE + S+Y
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 1802 MCESVVPTNNSGDLRSHYEEVH 1823
+ + + +EE H
Sbjct: 567 LLRIALMAEDEA----IFEEAH 584
|
| >2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22 Length = 226 | Back alignment and structure |
|---|
Score = 87.1 bits (215), Expect = 5e-19
Identities = 39/214 (18%), Positives = 70/214 (32%), Gaps = 29/214 (13%)
Query: 1368 PRTVAHHNALKKEEELDKQIEHLYCPPPSGTSNASRQGYVDIDSVSFDKEKC-VCCTVEC 1426
++ AL + + +E L PP ++ + C V+
Sbjct: 5 RQSTPTSQALYSDFSPPEGLEELLSAPPPDLVAQRHH--------GWNPKDCSENIDVKE 56
Query: 1427 GGQSLIHGPGTRGYGV--ANIGITRGCYQWKFLIVNEHKGNEGTCIGV--TRWPIRDYNH 1482
GG P + G +RG + W+ E +G +GV P++ ++
Sbjct: 57 GGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHA-VVGVATALAPLQADHY 115
Query: 1483 R----TTGDMWLYRAYSGNVYHSGEQT--------TMLPSFTQGDYITVVLDMDAQTLSF 1530
+ + W + G +YH + + + VVLDM+ TL +
Sbjct: 116 AALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGY 175
Query: 1531 GKNGEEPHLAFQDLDTSAPLYPIVLFYSTNANGE 1564
G AF+ L LYP V + +
Sbjct: 176 SIGGTYLGPAFRGLKGR-TLYPSV--SAVWGQCQ 206
|
| >3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A Length = 217 | Back alignment and structure |
|---|
Score = 87.1 bits (215), Expect = 5e-19
Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 30/199 (15%)
Query: 1387 IEHLYCPPPSGTSNASRQGYVDIDSVSFDKEKC-VCCTVECGGQSLIHGPGTRGYGV--A 1443
+E L PP ++ + C V+ GG P +
Sbjct: 27 LEELLSAPPPDLGAQ--------RRHGWNPKDCSENIEVKEGGLYFERRPVAQSTDGARG 78
Query: 1444 NIGITRGCYQWKFLIVNEHKGNEGTCIGVTR--WPIRDYNHR----TTGDMWLYRAYSGN 1497
G +RG + W+ E +G +GV P++ ++ + + W + G
Sbjct: 79 KRGYSRGLHAWEISWPLEQRGTHA-VVGVATALAPLQTDHYAALLGSNSESWGWDIGRGK 137
Query: 1498 VYHSGEQT--------TMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAP 1549
+YH + T + + VVLDM+ TL + G AF+ L
Sbjct: 138 LYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEGTLGYAIGGTYLGPAFRGL-KGRT 196
Query: 1550 LYPIVLFYSTNANGEKVKI 1568
LYP V S +V+I
Sbjct: 197 LYPAV---SAVWGQCQVRI 212
|
| >2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A Length = 212 | Back alignment and structure |
|---|
Score = 83.2 bits (205), Expect = 7e-18
Identities = 40/199 (20%), Positives = 69/199 (34%), Gaps = 24/199 (12%)
Query: 1391 YCPPPSG--TSNASRQGYVDIDSVSFDKEKC-VCCTVECGGQSLIH-GPGTRGYGV--AN 1444
YC P + Y S++ + V+ + + H P +
Sbjct: 10 YCKPTRLDLLLDMPPVSYDVQLLHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGK 69
Query: 1445 IGITRGCYQWKFLIVNEHKGNEGTC-IGVTRWPIRDYNHRT----TGDMWLYRAYSGNVY 1499
+G TRG + W+ +G + P+ + T + W + +Y
Sbjct: 70 VGYTRGLHVWQITWAMRQRGTHAVVGVATADAPLHSVGYTTLVGNNHESWGWDLGRNRLY 129
Query: 1500 HSGEQT---------TMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPL 1550
H G+ +F D V LDMD TLSF +G+ +AF+ L L
Sbjct: 130 HDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGLKGK-KL 188
Query: 1551 YPIVLFYSTNANGEKVKIT 1569
YP+V S ++++
Sbjct: 189 YPVV---SAVWGHCEIRMR 204
|
| >2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} Length = 171 | Back alignment and structure |
|---|
Score = 80.4 bits (198), Expect = 2e-17
Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 33/182 (18%)
Query: 1397 GTSNASRQGYV--DIDSVSFDKEKCVCCTVECGGQSLIHGPGTRGYGVANIGITRGCYQW 1454
G+S +S ++ D D++S+ VA+ +T+ +
Sbjct: 1 GSSGSSGFKHILVDGDTLSYHGNSGEVGCY-----------------VASRPLTKDSNYF 43
Query: 1455 KFLIVNEHKGNEGTC-IGVTRWPIR-DYNHRTTGDMWLYRAYSGNVYHSGEQTTML-PSF 1511
+ IV+ G GT +G+ D+ D Y A G +Y+ +
Sbjct: 44 EVSIVD--SGVRGTIAVGLVPQYYSLDHQPGWLPDSVAYHADDGKLYNGRAKGRQFGSKC 101
Query: 1512 TQGDYITV-----VLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNANGEKV 1566
GD I D+ + F KNG+ + L+P V +S GE+V
Sbjct: 102 NSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMPMSPD-GLFPAVGMHS---LGEEV 157
Query: 1567 KI 1568
++
Sbjct: 158 RL 159
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 1e-14
Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 25/168 (14%)
Query: 1055 SSVHLVKQYLIRTPKSQKIVNLLSFLE--GKRSLIFVKTYRDASRIISAVQDSNMMTIPM 1112
++ V Q + + K+V LL L+ LIF + D I + + + +
Sbjct: 25 AASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84
Query: 1113 SNNGTSWSH-----VECLELLNLFNTGKSSLVIMTLSDFI--GNDFTNVEQVIIYNLPLS 1165
H E + + F GK +++ T D G DF ++ VI Y++P
Sbjct: 85 --------HGGKDQEERTKAIEAFREGKKDVLVAT--DVASKGLDFPAIQHVINYDMPEE 134
Query: 1166 INHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207
I +YV +I +G+ A F + D + L LL + + VP
Sbjct: 135 IENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVP 182
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 6e-14
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 24/168 (14%)
Query: 1055 SSVHLVKQYLIRTPKSQKIVNLLSFLE----GKRSLIFVKTYRDASRIISAVQDSNMMTI 1110
S+ + Q ++ +S K LL L +L+FV+T + A + +
Sbjct: 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACT 74
Query: 1111 PMSNNGTSWSH-----VECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLS 1165
+ H + E L+ F +GKS +++ T G D +NV+ VI ++LP
Sbjct: 75 SI--------HGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSD 126
Query: 1166 INHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207
I YV +I G+ A +F++ +I + L+ LL + + VP
Sbjct: 127 IEEYVHRIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVP 173
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-12
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 33/172 (19%)
Query: 1055 SSVHLVKQYLIRTPKSQKIVNLLSFL--EGKRSLIFVKTYRDASRIISAVQDSNMMTIPM 1112
+ VKQ + K K L+ L + +++FV+T R A + S + + T +
Sbjct: 271 GACSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSI 330
Query: 1113 SNNGTSWSH-----VECLELLNLFNTGKSSLVIMT------LSDFIGNDFTNVEQVIIYN 1161
H + + L F G ++I T L D N++ VI Y+
Sbjct: 331 --------HGDRLQSQREQALRDFKNGSMKVLIATSVASRGL------DIKNIKHVINYD 376
Query: 1162 LPLSINHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207
+P I+ YV +I G+ A +F+DP D +A+ L+K+LE S + VP
Sbjct: 377 MPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVP 428
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-10
Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 36/174 (20%)
Query: 1055 SSVHLVKQYLIRTPKSQKIVNLLSFLE----GKRSLIFVKTYRDASRIISAVQDSNMMTI 1110
S+ + Q ++ +S K LL L +L+FV+T + A + +
Sbjct: 245 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACT 304
Query: 1111 PMSNNGTSWSH-----VECLELLNLFNTGKSSLVIMT------LSDFIGNDFTNVEQVII 1159
+ H + E L+ F +GKS +++ T L D +NV+ VI
Sbjct: 305 SI--------HGDRSQRDREEALHQFRSGKSPILVATAVAARGL------DISNVKHVIN 350
Query: 1160 YNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207
++LP I YV +I G+ A +F++ +I + L+ LL + + VP
Sbjct: 351 FDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVP 403
|
| >3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens} Length = 213 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 1e-10
Identities = 25/138 (18%), Positives = 54/138 (39%), Gaps = 21/138 (15%)
Query: 1436 GTRGYGV--ANIGITRGCYQWKFLIVNEHKGNEGTC-IGVTRWPIRDYN-HRTTGDM--- 1488
G +GY + A+ G+ +G + ++ + + +G ++ N G
Sbjct: 35 GEKGYSMVRASHGVRKGAWYFEITVD--EMPPDTAARLGWSQ---PLGNLQAPLGYDKFS 89
Query: 1489 WLYRAYSGNVYHSGEQTTMLPSFTQGDYITVVLDMDAQTLS--------FGKNGEEPHLA 1540
+ +R+ G +H + QGD + +++ T+S F KNG +A
Sbjct: 90 YSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNGVNQGVA 149
Query: 1541 FQDLDTSAPLYPIVLFYS 1558
++D+ +P + Y
Sbjct: 150 YKDI-FEGVYFPAISLYK 166
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1858 | |||
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 100.0 | |
| 1a12_A | 413 | RCC1, regulator of chromosome condensation 1; guan | 100.0 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 100.0 | |
| 3mvd_K | 423 | Regulator of chromosome condensation; protein-DNA | 100.0 | |
| 3of7_A | 473 | Regulator of chromosome condensation; beta-propell | 100.0 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 100.0 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 100.0 | |
| 3mvd_K | 423 | Regulator of chromosome condensation; protein-DNA | 100.0 | |
| 1a12_A | 413 | RCC1, regulator of chromosome condensation 1; guan | 100.0 | |
| 3of7_A | 473 | Regulator of chromosome condensation; beta-propell | 100.0 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 100.0 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.95 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.95 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.94 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.93 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.93 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.92 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.92 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.92 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.91 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.91 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.91 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.9 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.9 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.9 | |
| 3toj_A | 213 | SET1/ASH2 histone methyltransferase complex subun; | 99.89 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.88 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.88 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.88 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.87 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.87 | |
| 3emw_A | 217 | SPRY domain-containing SOCS box protein 2; apoptos | 99.87 | |
| 2yyo_A | 171 | SPRY domain-containing protein 3; NPPSFA, national | 99.87 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.87 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.87 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.86 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.86 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.86 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.86 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.85 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.84 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.84 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.83 | |
| 2jk9_A | 212 | SPRY domain-containing SOCS box protein 1; transcr | 99.82 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.82 | |
| 2afj_A | 226 | Gene rich cluster, C9 gene; beta sandwich, gene re | 99.81 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.8 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.8 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.8 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.67 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.79 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.77 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.76 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.75 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.74 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.73 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.71 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.7 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.7 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.69 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.69 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.67 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.66 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.64 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.64 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.62 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.61 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.6 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.59 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.58 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.56 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.56 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.56 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.52 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.49 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.46 | |
| 2vok_A | 188 | 52 kDa RO protein; polymorphism, immune system, me | 99.46 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.43 | |
| 2wl1_A | 191 | Pyrin, marenostrin; amyloidosis, polymorphism, cyt | 99.42 | |
| 2fbe_A | 201 | Predicted: similar to RET finger protein-like 1; d | 99.42 | |
| 3uv9_A | 186 | TRIM5alpha, tripartite motif-containing protein 5; | 99.41 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.39 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.36 | |
| 3kb5_A | 193 | Tripartite motif-containing protein 72; B30.2, gus | 99.32 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.24 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.22 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.19 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.11 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 98.96 | |
| 4b3n_A | 602 | Maltose-binding periplasmic protein, tripartite mo | 98.93 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 98.9 | |
| 2e63_A | 170 | KIAA1787 protein; structure genomics, neuralized d | 98.69 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 98.68 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 98.51 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 98.48 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 98.41 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 98.4 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 98.34 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 98.34 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 98.31 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 98.16 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 98.11 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 98.03 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 98.02 | |
| 2yue_A | 168 | Protein neuralized; structure genomics, NEUZ(NHR) | 97.98 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 97.96 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 97.95 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 97.76 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 97.24 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 96.89 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 95.73 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 94.69 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 93.47 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 92.76 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 92.47 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 91.97 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 90.76 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 89.98 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 89.42 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 89.13 | |
| 4gbf_A | 400 | Phikz131; 7-bladed beta-propeller, possibly partic | 88.06 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 87.2 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 86.77 | |
| 4gbf_A | 400 | Phikz131; 7-bladed beta-propeller, possibly partic | 86.5 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 85.61 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 85.02 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 82.65 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 82.3 |
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-58 Score=561.76 Aligned_cols=355 Identities=35% Similarity=0.610 Sum_probs=316.4
Q ss_pred ceeeCCeEEEEcCCCCCCCCcCCCCCcccccccCCC--CCeEEEEEcCCEEEEEecCCcEEEEccc---ccCCCCCCCCC
Q psy15269 183 ISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLP--SNIRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLANTTIQP 257 (1858)
Q Consensus 183 ~a~s~g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~--~~IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~~~~~ 257 (1858)
....+|+||+||+|.+||||.+.......|+.+..+ .+|++|+||..|+++|++||+||+||.| |||.++.....
T Consensus 15 ~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~ 94 (389)
T 3kci_A 15 YFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVS 94 (389)
T ss_dssp ------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEE
T ss_pred eECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCcc
Confidence 455889999999999999998887777778776543 3699999999999999999999999987 88888777777
Q ss_pred CceeecCcc-CcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEE
Q psy15269 258 LPKRVPLEA-AIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAA 336 (1858)
Q Consensus 258 ~P~~V~~~~-~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~a 336 (1858)
.|..+.... ...++++|+||.+|++||+++|+||+||.|.+||||+++......|+.+.. +.+.+|++|+||.+|+++
T Consensus 95 ~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-l~~~~i~~va~G~~hs~a 173 (389)
T 3kci_A 95 TPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIES-LRGIEVVDVAAGGAHSAC 173 (389)
T ss_dssp EEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG-GTTSCEEEEEECSSEEEE
T ss_pred CCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecc-cCCCeEEEEEeCcCeEEE
Confidence 888877543 234556788999999999999999999999999999999888889999985 677899999999999999
Q ss_pred EEeCCeEEEEecCCCCCCCCCCCCccccccccccCCC--ceEEeecC--ceEEEEEcCCCEEEEEeCCCCCCCCCCCCCc
Q psy15269 337 VTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSD--VGAVSCGE--SHTLVLSQDGHTVWSMGSGNLGKLGHEDTGK 412 (1858)
Q Consensus 337 LT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~--I~~IAcG~--~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~ 412 (1858)
|+++|+||+||.|.+||||.++......|..+..+.+ |++|+||. .|+++++++| .||+||.|.+||||.+....
T Consensus 174 lt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G-~v~~wG~n~~GqLG~g~~~~ 252 (389)
T 3kci_A 174 VTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDD-TVWSWGDGDYGKLGRGGSDG 252 (389)
T ss_dssp EETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTT-EEEEEECCGGGTTSSSSCCC
T ss_pred EeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCC-EEEEEeCCCCCCCCCCCCCC
Confidence 9999999999999999999999888889999887754 89999995 8999999999 59999999999999999988
Q ss_pred eeccEEeeecccccEEEEEecCceEEEEecCCcEEEEe------CCCCCCCccccccEEecCCCCCCEEEEEEcCceEEE
Q psy15269 413 VTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLA 486 (1858)
Q Consensus 413 ~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WG------LG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlA 486 (1858)
...|..++.+.+.+|++|+||.+|+++|+++|+||+|| +|.+... ....|+.+..+.+.+|++|+||.+|++|
T Consensus 253 ~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~-~~~~P~~v~~l~~~~v~~ia~G~~h~~a 331 (389)
T 3kci_A 253 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDD-HVRRPRQVQGLQGKKVIAIATGSLHCVC 331 (389)
T ss_dssp EEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCC-CEEEEEECGGGTTCCEEEEEECSSEEEE
T ss_pred ccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCc-cccCCeEeccCCCCCEEEEEeccCeEEE
Confidence 99999999988889999999999999999999999999 6666543 4668999999988899999999999999
Q ss_pred EEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEEecCcceEEEe
Q psy15269 487 LSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYT 541 (1858)
Q Consensus 487 Lt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt 541 (1858)
++++|+||+||.|++||||.|...+ ...|+.|..+.+.+|.+|+||.+||++++
T Consensus 332 l~~~G~v~~wG~n~~GqLG~g~~~~-~~~P~~v~~~~~~~v~~va~G~~ht~al~ 385 (389)
T 3kci_A 332 CTEDGEVYTWGDNDEGQLGDGTTNA-IQRPRLVAALQGKKVNRVACGSAHTLAWS 385 (389)
T ss_dssp EETTCCEEEEECCTTSTTCSSSCCC-EEEEEECGGGTTSCCCEEEEETTEEEEEC
T ss_pred ECCCCCEEEeeCCCCCcCCCCCCCC-ccCcEEecccCCCCEEEEEecCCcEEEEe
Confidence 9999999999999999999998655 56899999999999999999999999997
|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-56 Score=544.76 Aligned_cols=352 Identities=25% Similarity=0.400 Sum_probs=304.4
Q ss_pred cccceeeCCeEEEEcCCCCCCCCcCCCCC-cccccccCCCCCeEEEEEcCCEEEEEecCCcEEEEccc---ccCCCCCC-
Q psy15269 180 DTDISVAHSKVYTWGCNLHHQILDEVRGK-CSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLANTT- 254 (1858)
Q Consensus 180 ~t~~a~s~g~Vy~WGsN~~GQLG~g~~~~-~~~P~~v~~~~~IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~~- 254 (1858)
|+.+...+|+||+||.|.+||||.+.... ...|+.+..+.+|++|+||..|+++|++||+||+||.| |||.+...
T Consensus 19 h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~ 98 (413)
T 1a12_A 19 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVE 98 (413)
T ss_dssp CTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCST
T ss_pred cceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCCCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCC
Confidence 45556688999999999999999997654 66888888888999999999999999999999999987 77766542
Q ss_pred -CCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeC--CCCCCcCCCCCccc-ccceeeecCCCCCcEEEEEec
Q psy15269 255 -IQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGV--GEHGKLGHGNTLSQ-RRPKLIMGGLYGKRVTQVSAG 330 (1858)
Q Consensus 255 -~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~--N~~GQLG~g~~~~~-~~P~~V~~~l~~~~IvqVa~G 330 (1858)
....|.++.+.. +|++|+||.+|+++|+++|+||+||. |.+||||.+..... ..|.+|. .+.+|++|+||
T Consensus 99 ~~~~~P~~v~l~~---~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~---~~~~i~~ia~G 172 (413)
T 1a12_A 99 GSEMVPGKVELQE---KVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQ---LDVPVVKVASG 172 (413)
T ss_dssp TGGGSCEECCCCS---CEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEEC---CSSCEEEEEEC
T ss_pred ccccCCeEecCCC---cEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEec---CCCCEEEEEec
Confidence 345688776543 67778899999999999999999999 99999999876543 4587773 45789999999
Q ss_pred CceEEEEEeCCeEEEEecCCCCCCCCCCCC-----------cccccccccc-------CCCceEEeecCceEEEEEcCCC
Q psy15269 331 HSHSAAVTEDGLLYTWGEGDHGRLGHGDLK-----------SRHTPTLVTE-------LSDVGAVSCGESHTLVLSQDGH 392 (1858)
Q Consensus 331 ~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~-----------~~~~P~~V~~-------l~~I~~IAcG~~HTlaLt~dG~ 392 (1858)
.+|+++|+++|+||+||.|.+||||.+... ....|..+.. ..+|++|+||.+|+++|+++|+
T Consensus 173 ~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~ 252 (413)
T 1a12_A 173 NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 252 (413)
T ss_dssp SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCC
T ss_pred CceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCC
Confidence 999999999999999999999999987532 1245654443 2459999999999999999996
Q ss_pred EEEEEeCCCCCCCCCCCCCceeccEEeeeccc--ccEEEEEecCceEEEEecCCcEEEEe------CCCCCCCccccccE
Q psy15269 393 TVWSMGSGNLGKLGHEDTGKVTTPKVIEALRK--FRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFHTPV 464 (1858)
Q Consensus 393 tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~--~~Iv~IaaG~~hSlALT~dG~Vy~WG------LG~gss~~~~~~P~ 464 (1858)
||+||.|.+||||.++......|..+..+.+ .+|++|+||.+|+++|+++|+||+|| +|.+........|+
T Consensus 253 -v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~ 331 (413)
T 1a12_A 253 -VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPT 331 (413)
T ss_dssp -EEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEE
T ss_pred -EEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCE
Confidence 9999999999999999988899999988776 67999999999999999999999999 66664445577899
Q ss_pred EecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeec--CCCceEEEEEecCcceEEEe
Q psy15269 465 LVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVG--LEDVCVRQICAGSLFSIAYT 541 (1858)
Q Consensus 465 ~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~--L~~~~I~~Ia~G~~hS~alt 541 (1858)
.|+.+. +|++|+||.+|++|++++|+||+||.|.+||||.+...+ ...|.+|.. +.+.+|.+|+||.+|+++++
T Consensus 332 ~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~-~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~ 407 (413)
T 1a12_A 332 LISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDED-AWSPVEMMGKQLENRVVLSVSSGGQHTVLLV 407 (413)
T ss_dssp ECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSC-EEEEEECCSTTTTTEEEEEEEECSSEEEEEE
T ss_pred EecccC--ceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCC-cccCeEccccccCCCeEEEEeeCCCcEEEEE
Confidence 998876 899999999999999999999999999999999998744 567888874 56788999999999999998
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-55 Score=541.14 Aligned_cols=346 Identities=27% Similarity=0.446 Sum_probs=308.5
Q ss_pred ccccCCCCCeEEEEEcCCEEEEEecCCcEEEEccc---ccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEeeCC
Q psy15269 212 PRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEG 288 (1858)
Q Consensus 212 P~~v~~~~~IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG 288 (1858)
|.....+.+|++|+||..|+++|+++|+||+||.| |||.+.......|.++.... ..+|++|+||..|+++|+++|
T Consensus 9 ~~v~~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~-~~~i~~va~G~~ht~al~~~g 87 (406)
T 4d9s_A 9 DEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALD-GHQIVSVTCGADHTVAYSQSG 87 (406)
T ss_dssp ------CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGT-TSCEEEEEECSSEEEEEETTT
T ss_pred ccCCCCccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccC-CCCEEEEEeCcceEEEEECCC
Confidence 33344456899999999999999999999999987 88888887777888776443 236778889999999999986
Q ss_pred -cEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccc
Q psy15269 289 -EVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTL 367 (1858)
Q Consensus 289 -~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~ 367 (1858)
+||+||.|.+||||+++......|..+.. +.+.+|++|+||.+|+++|+++|+||+||.|.+||||.++......|..
T Consensus 88 g~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~ 166 (406)
T 4d9s_A 88 MEVYSWGWGDFGRLGHGNSSDLFTPLPIKA-LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQK 166 (406)
T ss_dssp TEEEEEECCGGGTTCSSSCCCEEEEEECGG-GTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEE
T ss_pred CEEEEEcCCCCcCCCCCCCCccccceEecc-cCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceE
Confidence 99999999999999999888888988875 6778999999999999999999999999999999999999888889999
Q ss_pred cccCC--CceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEecCCc
Q psy15269 368 VTELS--DVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGL 445 (1858)
Q Consensus 368 V~~l~--~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~ 445 (1858)
+..+. +|++|+||.+|+++|+++|+ ||+||.|.+||||.++......|..+..+.+.+|++|+||.+|+++|+++|+
T Consensus 167 v~~~~~~~i~~va~G~~hs~alt~~G~-v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~ 245 (406)
T 4d9s_A 167 IQAFEGIRIKMVAAGAEHTAAVTEDGD-LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 245 (406)
T ss_dssp CGGGTTCCEEEEEECSSEEEEEETTSC-EEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCC
T ss_pred ecccCCCcEEEEecCCCeEEEEeCCCC-EEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCC
Confidence 98776 58999999999999999996 9999999999999999999999999998888899999999999999999999
Q ss_pred EEEEe------CCCCCCCccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeee
Q psy15269 446 VFWWG------LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKV 519 (1858)
Q Consensus 446 Vy~WG------LG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V 519 (1858)
||+|| +|.+... ....|..+..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+...+ ...|.++
T Consensus 246 v~~wG~n~~GqlG~g~~~-~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~-~~~p~~v 323 (406)
T 4d9s_A 246 LYTYGWSKYGQLGHGDLE-DHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLD-QCSPVQV 323 (406)
T ss_dssp EEEEECCTTSTTCSSSCC-CEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSC-EEEEEEE
T ss_pred EEEeeCCCCCCCCCCCCc-CccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCC-CccCEEE
Confidence 99999 5555443 45689999999888999999999999999999999999999999999997655 4578888
Q ss_pred ecCCCceEEEEEecCcceEEEeecCCCCcEEeeccCcccccCCcch
Q psy15269 520 VGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTF 565 (1858)
Q Consensus 520 ~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~WG~n~~gqLg~~t~ 565 (1858)
..+.+.+|++|+||.+|+++++ ++|++|+||+|..+|||....
T Consensus 324 ~~~~~~~v~~va~G~~hs~alt---~~G~v~~wG~n~~GqLG~g~~ 366 (406)
T 4d9s_A 324 RFPDDQKVVQVSCGWRHTLAVT---ERNNVFAWGRGTNGQLGIGES 366 (406)
T ss_dssp CCGGGCCEEEEEECSSEEEEEE---TTSCEEEEECCTTSTTCSSSC
T ss_pred eccCCCcEEEEEeCCCeEEEEe---CCCCEEEecCCCCCccCCCCC
Confidence 7777778999999999999999 899999999999999997653
|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-54 Score=533.90 Aligned_cols=351 Identities=23% Similarity=0.312 Sum_probs=300.6
Q ss_pred cccceeeCCeEEEEcCCCCCCCCcCCC-CCcccccccCCCCCeEEEEEcCCEEEEEecCCcEEEEccc---ccCCCCCCC
Q psy15269 180 DTDISVAHSKVYTWGCNLHHQILDEVR-GKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLANTTI 255 (1858)
Q Consensus 180 ~t~~a~s~g~Vy~WGsN~~GQLG~g~~-~~~~~P~~v~~~~~IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~~~ 255 (1858)
++...+.+|+||+||+|.+||||.+.. .....|..+..+.+|++|+||..|+++|++||+||+||.| |||.+....
T Consensus 35 ~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~ 114 (423)
T 3mvd_K 35 LPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSED 114 (423)
T ss_dssp CCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCST
T ss_pred cceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCC
Confidence 445666899999999999999999864 4466888888888999999999999999999999999987 777776543
Q ss_pred --CCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeC--CCCCCcCCCCCcccccceeeecCCCCCcEEEEEecC
Q psy15269 256 --QPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGV--GEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGH 331 (1858)
Q Consensus 256 --~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~--N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~ 331 (1858)
...|.++.+.. +|++|+||.+|+++|+++|+||+||. |.+||||.+.......|..+ +.+.+|++|+||.
T Consensus 115 ~~~~~P~~v~~~~---~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~---~~~~~i~~va~G~ 188 (423)
T 3mvd_K 115 GSESKPDLIDLPG---KALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL---MEGTVCCSIASGA 188 (423)
T ss_dssp TSSSSCEECCCSS---CEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEES---STTCCEEEEEECS
T ss_pred ccccCCeEEcCCC---CEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEe---cCCCcEEEEecCC
Confidence 56787777544 46678899999999999999999999 99999999988777666655 4567899999999
Q ss_pred ceEEEEEeCCeEEEEecCCCCCCCCCCCC-----------ccccccccccC--CCceEEeecCceEEEE-EcCCCEEEEE
Q psy15269 332 SHSAAVTEDGLLYTWGEGDHGRLGHGDLK-----------SRHTPTLVTEL--SDVGAVSCGESHTLVL-SQDGHTVWSM 397 (1858)
Q Consensus 332 ~HS~aLT~dG~VYtWG~N~~GQLG~G~~~-----------~~~~P~~V~~l--~~I~~IAcG~~HTlaL-t~dG~tVysW 397 (1858)
+|+++|+++|+||+||.|.+||||.+... ....|..+... ..|++|+||.+|++++ +.+|+ ||+|
T Consensus 189 ~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~-v~~w 267 (423)
T 3mvd_K 189 DHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQV-IWAT 267 (423)
T ss_dssp SEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCC-EEEE
T ss_pred CeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCe-EEEE
Confidence 99999999999999999999999997642 34467666543 3589999999999999 58996 9999
Q ss_pred eCCCCCCCCCCCCC--ceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEe------CCCCCCCccccccEEecCC
Q psy15269 398 GSGNLGKLGHEDTG--KVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFHTPVLVTGL 469 (1858)
Q Consensus 398 G~N~~GQLG~g~~~--~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WG------LG~gss~~~~~~P~~V~~l 469 (1858)
|.|.+||||.+... ....|..+. ..+|++|+||.+|+++|+++|+||+|| +|.+........|..+..+
T Consensus 268 G~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l 344 (423)
T 3mvd_K 268 GLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKL 344 (423)
T ss_dssp EECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTC
T ss_pred eCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccC
Confidence 99999999996543 344565554 346999999999999999999999999 6777666556789999888
Q ss_pred CCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeec--CCCceEEEEEecCcceEEEee
Q psy15269 470 SSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVG--LEDVCVRQICAGSLFSIAYTV 542 (1858)
Q Consensus 470 ~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~--L~~~~I~~Ia~G~~hS~alt~ 542 (1858)
.+ +|++|+||.+|++|++++|+||+||.|.+||||.|+..+ ...|++|.. +.+.+|.+|+||.+|+++++.
T Consensus 345 ~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~-~~~P~~v~~~~~~~~~v~~va~G~~ht~~l~~ 417 (423)
T 3mvd_K 345 TE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDD-ELEPIVVVSKNTQGKHMLLASGGGQHAIFLVK 417 (423)
T ss_dssp CS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCC-EEEEEECCSTTTTTCCEEEEEECSSEEEEEEE
T ss_pred CC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCC-cccCeEEeCcccCCCEEEEEEECCCcEEEEEc
Confidence 76 899999999999999999999999999999999998755 457998875 677889999999999999984
|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-54 Score=542.21 Aligned_cols=356 Identities=23% Similarity=0.426 Sum_probs=297.4
Q ss_pred cceeeCCeEEEEcCCCCCCCCcCCCC---CcccccccCCC----CCeEEEEEcCCEEEEEecCCcEEEEccc---ccCCC
Q psy15269 182 DISVAHSKVYTWGCNLHHQILDEVRG---KCSRPRLQSLP----SNIRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLA 251 (1858)
Q Consensus 182 ~~a~s~g~Vy~WGsN~~GQLG~g~~~---~~~~P~~v~~~----~~IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg 251 (1858)
...+.+++||+||+|.+||||.|... ....|+.++.+ .+|++|+||..|+++|+++|+||+||.| |||.+
T Consensus 23 ~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~ 102 (473)
T 3of7_A 23 YLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRD 102 (473)
T ss_dssp HCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSC
T ss_pred ccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCC
Confidence 34457899999999999999999743 35567666544 4799999999999999999999999987 77776
Q ss_pred CCCC-----------------------CCCceeecC--cc---CcceEEEEEecCcEEEEEeeCCcEEEEeC--CCCCCc
Q psy15269 252 NTTI-----------------------QPLPKRVPL--EA---AIVSLSVSKCSEAHVLTVTSEGEVYSWGV--GEHGKL 301 (1858)
Q Consensus 252 ~~~~-----------------------~~~P~~V~~--~~---~i~~Is~Ia~G~~HtlaLT~dG~VysWG~--N~~GQL 301 (1858)
.... ...|.+++. .. ...+|++|+||..|++||+++|+||+||. |.+|||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqL 182 (473)
T 3of7_A 103 TSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGIL 182 (473)
T ss_dssp CC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEE
T ss_pred CcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCcc
Confidence 5543 345766653 11 23678889999999999999999999998 689999
Q ss_pred CCCCC--cccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCc----cccccccccCCCce
Q psy15269 302 GHGNT--LSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKS----RHTPTLVTELSDVG 375 (1858)
Q Consensus 302 G~g~~--~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~----~~~P~~V~~l~~I~ 375 (1858)
|.+.. .....|..|.. +.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|..+. +.+|+
T Consensus 183 G~~~~~~~~~~~P~~v~~-l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~-~~~v~ 260 (473)
T 3of7_A 183 GFYQDKIKIQKTPWKVPT-FSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFG-LRHVK 260 (473)
T ss_dssp ESBTTTBSCEEEEEECCC-CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECS-CCSEE
T ss_pred CCCCCCCccccCcEEccc-cCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecC-CcceE
Confidence 98544 35667888875 6777899999999999999999999999999999999986543 34566553 36799
Q ss_pred EEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCC----ceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEe-
Q psy15269 376 AVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTG----KVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG- 450 (1858)
Q Consensus 376 ~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~----~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WG- 450 (1858)
+|+||.+|+++|+.+|+ ||+||.|.+||||.+... ....|+.+..+.+.+|++|+||.+|+++|+++|+||+||
T Consensus 261 ~Ia~G~~hs~alt~~G~-v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~ 339 (473)
T 3of7_A 261 YIASGENHCFALTKDNK-LVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGR 339 (473)
T ss_dssp EEEECSSEEEEEETTSC-EEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred EEecCCCeEEEEecCCC-EEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEEC
Confidence 99999999999999996 999999999999998754 457899998888889999999999999999999999999
Q ss_pred -----CCCCCC-------------CccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCC
Q psy15269 451 -----LGLRSS-------------SISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNP 512 (1858)
Q Consensus 451 -----LG~gss-------------~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~ 512 (1858)
+|.+.. ......|..++.+. +|++|+||.+|++|++++|+||+||.|.+||||.|.....
T Consensus 340 n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~~~~ 417 (473)
T 3of7_A 340 LDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDD 417 (473)
T ss_dssp CTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSCCSC
T ss_pred CCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCCCCcc
Confidence 554321 11234677776554 7999999999999999999999999999999999985556
Q ss_pred cccCeeee--cCCCceEEEEEecCcceEEEee
Q psy15269 513 VDQPSKVV--GLEDVCVRQICAGSLFSIAYTV 542 (1858)
Q Consensus 513 vs~P~~V~--~L~~~~I~~Ia~G~~hS~alt~ 542 (1858)
...|++|. .+.+.+|.+|+||.+||+++..
T Consensus 418 ~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~ 449 (473)
T 3of7_A 418 TEVPTRIKNTATQDHNIILVGCGGQFSVSGGV 449 (473)
T ss_dssp EEEEEECCCTTTTTEEEEEEEECSSEEEEEEE
T ss_pred ccCCeEecccccCCCeEEEEeeCCCeEEEEEe
Confidence 77899997 4567789999999999999973
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-54 Score=531.02 Aligned_cols=338 Identities=32% Similarity=0.510 Sum_probs=300.4
Q ss_pred cccceeeCCeEEEEcCCCCCCCCcCCCCCcccccccCCCC--CeEEEEEcCCEEEEEecCC-cEEEEccc---ccCCCCC
Q psy15269 180 DTDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPS--NIRHIEAGQFCTFLLDSTG-GLLVYGKG---WLGLANT 253 (1858)
Q Consensus 180 ~t~~a~s~g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~--~IkqVA~G~~hTlaLt~dG-~VyawG~N---qLGlg~~ 253 (1858)
++.+...+|+||+||+|.+||||.+.......|+.+..+. +|++|+||..|+++|+++| +||+||.| |+|.+..
T Consensus 27 hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~ 106 (406)
T 4d9s_A 27 HSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNS 106 (406)
T ss_dssp EEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSC
T ss_pred eEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCC
Confidence 3445558999999999999999999988888888776544 7999999999999999886 99999987 7887777
Q ss_pred CCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCce
Q psy15269 254 TIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSH 333 (1858)
Q Consensus 254 ~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~H 333 (1858)
.....|.++.... -.+|++|+||..|++||+++|+||+||.|.+||||.++......|+++.. +.+.+|++|+||.+|
T Consensus 107 ~~~~~p~~v~~l~-~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~~~~i~~va~G~~h 184 (406)
T 4d9s_A 107 SDLFTPLPIKALH-GIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA-FEGIRIKMVAAGAEH 184 (406)
T ss_dssp CCEEEEEECGGGT-TCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGG-GTTCCEEEEEECSSE
T ss_pred CccccceEecccC-CCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecc-cCCCcEEEEecCCCe
Confidence 6666777666443 23577888999999999999999999999999999999988889999985 677899999999999
Q ss_pred EEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCC--CceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCC
Q psy15269 334 SAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELS--DVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTG 411 (1858)
Q Consensus 334 S~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~--~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~ 411 (1858)
+++|+++|+||+||.|.+||||.++......|..+..+. +|++|+||.+|+++|+.+|+ ||+||.|.+||||.++..
T Consensus 185 s~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~-v~~wG~n~~GqlG~g~~~ 263 (406)
T 4d9s_A 185 TAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA-LYTYGWSKYGQLGHGDLE 263 (406)
T ss_dssp EEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCC-EEEEECCTTSTTCSSSCC
T ss_pred EEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCC-EEEeeCCCCCCCCCCCCc
Confidence 999999999999999999999999988888899887764 59999999999999999996 999999999999999999
Q ss_pred ceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEe------CCCCCCCccccccEEecCCCCCCEEEEEEcCceEE
Q psy15269 412 KVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVL 485 (1858)
Q Consensus 412 ~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WG------LG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~Htl 485 (1858)
....|+.+..+.+.+|++|+||.+|+++|+++|+||+|| +|.+... ....|..+..+...+|++|+||.+|++
T Consensus 264 ~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~-~~~~p~~v~~~~~~~v~~va~G~~hs~ 342 (406)
T 4d9s_A 264 DHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL-DQCSPVQVRFPDDQKVVQVSCGWRHTL 342 (406)
T ss_dssp CEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSS-CEEEEEEECCGGGCCEEEEEECSSEEE
T ss_pred CccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCC-CCccCEEEeccCCCcEEEEEeCCCeEE
Confidence 999999999988889999999999999999999999999 5555443 456788888777789999999999999
Q ss_pred EEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecC
Q psy15269 486 ALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGL 522 (1858)
Q Consensus 486 ALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L 522 (1858)
|++++|+||+||.|.+||||.|+..+ ...|..|+.+
T Consensus 343 alt~~G~v~~wG~n~~GqLG~g~~~~-~~~P~~v~~l 378 (406)
T 4d9s_A 343 AVTERNNVFAWGRGTNGQLGIGESVD-RNFPKIIEAL 378 (406)
T ss_dssp EEETTSCEEEEECCTTSTTCSSSCCC-EEEEEECGGG
T ss_pred EEeCCCCEEEecCCCCCccCCCCCCC-CcCCEEeeee
Confidence 99999999999999999999998765 4578888765
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-52 Score=508.89 Aligned_cols=335 Identities=27% Similarity=0.487 Sum_probs=285.3
Q ss_pred EEEEcCCEEEEEecCCcEEEEccc---ccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCC
Q psy15269 223 HIEAGQFCTFLLDSTGGLLVYGKG---WLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHG 299 (1858)
Q Consensus 223 qVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~G 299 (1858)
++..-..+.+++++||+||+||.| |||.++......|.++..... .+|++|+||..|+++|+++|+||+||.|.+|
T Consensus 5 ~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~-~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~G 83 (389)
T 3kci_A 5 HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALAT-LRPVQLIGGEQTLFAVTADGKLYATGYGAGG 83 (389)
T ss_dssp ----------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHH-TCEEEEEEETTEEEEEETTSCEEEEECCGGG
T ss_pred ccccCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccC-CceEEEEeCCCeEEEEcCCCcEEEEECCCCC
Confidence 445566788999999999999987 777766666666776654332 3466788999999999999999999999999
Q ss_pred CcCCCCCcccccceeeecCCCCC--cEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCC--Cce
Q psy15269 300 KLGHGNTLSQRRPKLIMGGLYGK--RVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELS--DVG 375 (1858)
Q Consensus 300 QLG~g~~~~~~~P~~V~~~l~~~--~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~--~I~ 375 (1858)
|||.++......|..+.. +.+. ++++|+||.+|+++|+++|+||+||.|.+||||.++......|..|..+. +|+
T Consensus 84 qLG~g~~~~~~~p~~v~~-~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~ 162 (389)
T 3kci_A 84 RLGIGGTESVSTPTLLES-IQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVV 162 (389)
T ss_dssp TTSSSSSCCEEEEEECGG-GTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEE
T ss_pred CCCCCCcCCccCCEEccc-ccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEE
Confidence 999999888888998875 4444 45789999999999999999999999999999999988888999998776 489
Q ss_pred EEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecC--ceEEEEecCCcEEEEe---
Q psy15269 376 AVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGT--SFSVALTWDGLVFWWG--- 450 (1858)
Q Consensus 376 ~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~--~hSlALT~dG~Vy~WG--- 450 (1858)
+|+||..|+++|+++|+ ||+||.|.+||||.++......|+.+..+.+.+|++|+||. .|+++++++|+||+||
T Consensus 163 ~va~G~~hs~alt~~G~-v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~ 241 (389)
T 3kci_A 163 DVAAGGAHSACVTAAGD-LYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241 (389)
T ss_dssp EEEECSSEEEEEETTSC-EEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCG
T ss_pred EEEeCcCeEEEEeCCCe-EEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCC
Confidence 99999999999999996 99999999999999999999999999999999999999995 8999999999999999
Q ss_pred ---CCCCCCCccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceE
Q psy15269 451 ---LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCV 527 (1858)
Q Consensus 451 ---LG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I 527 (1858)
+|.+... ....|..+..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+.... ...|.++..+.+.+|
T Consensus 242 ~GqLG~g~~~-~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~-~~~P~~v~~l~~~~v 319 (389)
T 3kci_A 242 YGKLGRGGSD-GCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDH-VRRPRQVQGLQGKKV 319 (389)
T ss_dssp GGTTSSSSCC-CEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCC-EEEEEECGGGTTCCE
T ss_pred CCCCCCCCCC-CccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCcc-ccCCeEeccCCCCCE
Confidence 6666543 45679999998888999999999999999999999999999999999997654 568999999988999
Q ss_pred EEEEecCcceEEEeecCCCCcEEeeccCcccccCCcch
Q psy15269 528 RQICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTF 565 (1858)
Q Consensus 528 ~~Ia~G~~hS~alt~~~~dG~vy~WG~n~~gqLg~~t~ 565 (1858)
++|+||.+|+++++ ++|+||+||.|..+|||..+.
T Consensus 320 ~~ia~G~~h~~al~---~~G~v~~wG~n~~GqLG~g~~ 354 (389)
T 3kci_A 320 IAIATGSLHCVCCT---EDGEVYTWGDNDEGQLGDGTT 354 (389)
T ss_dssp EEEEECSSEEEEEE---TTCCEEEEECCTTSTTCSSSC
T ss_pred EEEEeccCeEEEEC---CCCCEEEeeCCCCCcCCCCCC
Confidence 99999999999998 899999999999999997654
|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-52 Score=509.26 Aligned_cols=334 Identities=22% Similarity=0.308 Sum_probs=284.9
Q ss_pred CCCeEEEEEcCCEEEEEecCCcEEEEccc---ccCCCCC-CCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEE
Q psy15269 218 PSNIRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLANT-TIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSW 293 (1858)
Q Consensus 218 ~~~IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~-~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysW 293 (1858)
..++++|+||..|+++++++|+||+||.| |||.+.. .....|.++.... .|++|+||..|+++|+++|+||+|
T Consensus 23 ~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~---~v~~va~G~~h~~~l~~~G~v~~w 99 (423)
T 3mvd_K 23 KAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP---DAVDISAGGMHNLVLTKSGDIYSF 99 (423)
T ss_dssp ------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS---SEEEEEECSSEEEEEETTSCEEEE
T ss_pred cceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC---CceEEeeCCCeEEEEeCCCeEEEe
Confidence 34788999999999999999999999987 7887754 3344566665433 467788999999999999999999
Q ss_pred eCCCCCCcCCCCCcc--cccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEec--CCCCCCCCCCCCccccccccc
Q psy15269 294 GVGEHGKLGHGNTLS--QRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGE--GDHGRLGHGDLKSRHTPTLVT 369 (1858)
Q Consensus 294 G~N~~GQLG~g~~~~--~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~--N~~GQLG~G~~~~~~~P~~V~ 369 (1858)
|.|.+||||++.... ...|..|.. ..+|++|+||.+|+++|+++|+||+||. |.+||||.+.......|..+.
T Consensus 100 G~n~~GqLG~~~~~~~~~~~P~~v~~---~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~ 176 (423)
T 3mvd_K 100 GCNDEGALGRDTSEDGSESKPDLIDL---PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLM 176 (423)
T ss_dssp ECCSSSTTCSCCCSTTSSSSCEECCC---SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESS
T ss_pred ECCCCcCCCCCCcCCccccCCeEEcC---CCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEec
Confidence 999999999998764 567887762 3579999999999999999999999999 999999999888788888877
Q ss_pred cCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCC-----------ceeccEEeeecccccEEEEEecCceEE
Q psy15269 370 ELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTG-----------KVTTPKVIEALRKFRVRKVCAGTSFSV 438 (1858)
Q Consensus 370 ~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~-----------~~~~P~~V~~l~~~~Iv~IaaG~~hSl 438 (1858)
...+|++|+||.+|+++|+++|+ ||+||.|.+||||.+... ....|..+.......|++|+||.+|++
T Consensus 177 ~~~~i~~va~G~~hs~alt~~G~-v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~ 255 (423)
T 3mvd_K 177 EGTVCCSIASGADHLVILTTAGK-VFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTF 255 (423)
T ss_dssp TTCCEEEEEECSSEEEEEETTSC-EEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEE
T ss_pred CCCcEEEEecCCCeEEEEecCCe-EEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEE
Confidence 66779999999999999999996 999999999999997642 456899888777888999999999999
Q ss_pred EE-ecCCcEEEEe------CCCCC-CCccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCC
Q psy15269 439 AL-TWDGLVFWWG------LGLRS-SSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFS 510 (1858)
Q Consensus 439 AL-T~dG~Vy~WG------LG~gs-s~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~ 510 (1858)
++ +++|+||+|| +|.+. .......|..+. ..+|++|+||.+|+++|+++|+||+||.|.+||||.+...
T Consensus 256 ~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~ 332 (423)
T 3mvd_K 256 MRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVK 332 (423)
T ss_dssp EEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCC
T ss_pred EEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCcc
Confidence 99 6999999999 45422 233445676665 3589999999999999999999999999999999999877
Q ss_pred CCcccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEeeccCcccccCCcch
Q psy15269 511 NPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTF 565 (1858)
Q Consensus 511 ~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~WG~n~~gqLg~~t~ 565 (1858)
+....|..+..+.+ +|++|+||.+|+++++ ++|++|+||.|..+|||.+..
T Consensus 333 ~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt---~~G~v~~wG~n~~GqLG~g~~ 383 (423)
T 3mvd_K 333 DVVEKPTIVKKLTE-KIVSVGCGEVCSYAVT---IDGKLYSWGSGVNNQLGVGDG 383 (423)
T ss_dssp SCEEEEEECTTCCS-CEEEEEEETTEEEEEE---TTSCEEEEECCTTSCSSSSSS
T ss_pred ccccCceEeccCCC-CEEEEEcCCCeEEEEc---CCCCEEEECCCCCCCCCCCCC
Confidence 76678888888877 8999999999999998 899999999999999997643
|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-51 Score=504.07 Aligned_cols=329 Identities=24% Similarity=0.421 Sum_probs=282.1
Q ss_pred EEEEcCCEEEEEecCCcEEEEccc---ccCCCCCCC-CCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCC
Q psy15269 223 HIEAGQFCTFLLDSTGGLLVYGKG---WLGLANTTI-QPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEH 298 (1858)
Q Consensus 223 qVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~~~-~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~ 298 (1858)
+.+.+..|+++++++|+||+||.| |||.+.... ...|..+... .+|++|+||..|+++|+++|+||+||.|.+
T Consensus 12 ~~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~---~~i~~va~G~~hs~~l~~~G~v~~wG~n~~ 88 (413)
T 1a12_A 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP---EDVVQAEAGGMHTVCLSKSGQVYSFGCNDE 88 (413)
T ss_dssp -CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS---SCEEEEEECSSEEEEEETTSCEEEEECCTT
T ss_pred hhhhccccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCC---CCeEEEEeCCCeEEEEcCCCCEEEEECCCC
Confidence 556668999999999999999987 888776543 4567777654 567778899999999999999999999999
Q ss_pred CCcCCCCCc--ccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEec--CCCCCCCCCCCCcc-ccccccccCCC
Q psy15269 299 GKLGHGNTL--SQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGE--GDHGRLGHGDLKSR-HTPTLVTELSD 373 (1858)
Q Consensus 299 GQLG~g~~~--~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~--N~~GQLG~G~~~~~-~~P~~V~~l~~ 373 (1858)
||||.++.. ....|..|. + ..+|++|+||.+|+++|+++|+||+||. |.+||||.++.... ..|..|....+
T Consensus 89 GqLG~~~~~~~~~~~P~~v~--l-~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~ 165 (413)
T 1a12_A 89 GALGRDTSVEGSEMVPGKVE--L-QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVP 165 (413)
T ss_dssp STTCSCCCSTTGGGSCEECC--C-CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSC
T ss_pred CCCCCCCCCCccccCCeEec--C-CCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEecCCCC
Confidence 999998763 456788884 3 3489999999999999999999999999 99999999875543 45888866677
Q ss_pred ceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCC-----------ceeccEEeeec-----ccccEEEEEecCceE
Q psy15269 374 VGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTG-----------KVTTPKVIEAL-----RKFRVRKVCAGTSFS 437 (1858)
Q Consensus 374 I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~-----------~~~~P~~V~~l-----~~~~Iv~IaaG~~hS 437 (1858)
|++|+||.+|+++|+++|+ ||+||.|.+||||.+... ....|+.+... ...+|++|+||.+|+
T Consensus 166 i~~ia~G~~hs~alt~~G~-v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs 244 (413)
T 1a12_A 166 VVKVASGNDHLVMLTADGD-LYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFT 244 (413)
T ss_dssp EEEEEECSSEEEEEETTSC-EEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEE
T ss_pred EEEEEecCceEEEEcCCCC-EEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEE
Confidence 9999999999999999996 999999999999987532 23567666543 456899999999999
Q ss_pred EEEecCCcEEEEe------CCCCCCCccccccEEecCCCC--CCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCC
Q psy15269 438 VALTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSS--HQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNF 509 (1858)
Q Consensus 438 lALT~dG~Vy~WG------LG~gss~~~~~~P~~V~~l~~--~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~ 509 (1858)
++|+++|+||+|| +|.+... ....|..+..+.+ .+|++|+||.+|+++++++|+||+||.|.+||||.+..
T Consensus 245 ~alt~~G~v~~wG~n~~gqLG~~~~~-~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~ 323 (413)
T 1a12_A 245 FAISHEGHVYGFGLSNYHQLGTPGTE-SCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEG 323 (413)
T ss_dssp EEEETTCCEEEEECCTTSTTSCSSCS-CEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTT
T ss_pred EEEeCCCCEEEEeCCCCcCCCCCCCC-cccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCC
Confidence 9999999999999 5555443 4578999988876 67999999999999999999999999999999999966
Q ss_pred CCCcccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEeeccCcccccCCcc
Q psy15269 510 SNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHT 564 (1858)
Q Consensus 510 ~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~WG~n~~gqLg~~t 564 (1858)
......|.+|..+. +|++|+||.+|+++++ ++|++|+||.|..+|||...
T Consensus 324 ~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt---~~G~v~~wG~n~~gqLG~g~ 373 (413)
T 1a12_A 324 AEEKSIPTLISRLP--AVSSVACGASVGYAVT---KDGRVFAWGMGTNYQLGTGQ 373 (413)
T ss_dssp CCCEEEEEECCSSS--SEEEEEECSSEEEEEE---TTSCEEEEECCTTSTTCSSS
T ss_pred CccccCCEEecccC--ceeEEEECcceEEEEe---CCCCEEEecCCCCCCCCCCC
Confidence 55567899998876 6999999999999999 79999999999999999754
|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-50 Score=502.06 Aligned_cols=336 Identities=24% Similarity=0.364 Sum_probs=281.5
Q ss_pred CeEEEEEcCCEEEEEecCCcEEEEccc---ccCCCCCC---CCCCceeecCc-cCcceEEEEEecCcEEEEEeeCCcEEE
Q psy15269 220 NIRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLANTT---IQPLPKRVPLE-AAIVSLSVSKCSEAHVLTVTSEGEVYS 292 (1858)
Q Consensus 220 ~IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~~---~~~~P~~V~~~-~~i~~Is~Ia~G~~HtlaLT~dG~Vys 292 (1858)
.|....++..|+++++++|+||+||.| |||.++.. ....|..+++. ....+|++|+||..|++||+++|+||+
T Consensus 11 ~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~ 90 (473)
T 3of7_A 11 HIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWS 90 (473)
T ss_dssp TCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEE
T ss_pred hhhhhcccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEE
Confidence 466777888999999999999999987 88888743 34456666544 234578889999999999999999999
Q ss_pred EeCCCCCCcCCCCCcc-----------------------cccceeeecC-C----CCCcEEEEEecCceEEEEEeCCeEE
Q psy15269 293 WGVGEHGKLGHGNTLS-----------------------QRRPKLIMGG-L----YGKRVTQVSAGHSHSAAVTEDGLLY 344 (1858)
Q Consensus 293 WG~N~~GQLG~g~~~~-----------------------~~~P~~V~~~-l----~~~~IvqVa~G~~HS~aLT~dG~VY 344 (1858)
||.|++||||.++... ...|..|... + .+.+|++|+||.+|+++|+++|+||
T Consensus 91 wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy 170 (473)
T 3of7_A 91 WGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVY 170 (473)
T ss_dssp EECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEE
T ss_pred eECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEE
Confidence 9999999999987654 4578888631 2 3678999999999999999999999
Q ss_pred EEec--CCCCCCCCCCC--CccccccccccCCC--ceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCc----ee
Q psy15269 345 TWGE--GDHGRLGHGDL--KSRHTPTLVTELSD--VGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGK----VT 414 (1858)
Q Consensus 345 tWG~--N~~GQLG~G~~--~~~~~P~~V~~l~~--I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~----~~ 414 (1858)
+||. |.+||||.+.. .....|..|..+.+ |++|+||.+|+++|+.+|+ ||+||.|.+||||.+.... ..
T Consensus 171 ~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~-v~~wG~n~~GqLG~~~~~~~~~~~~ 249 (473)
T 3of7_A 171 AWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGM-VFAWGNGQQNQLGRKVMERFRLKTL 249 (473)
T ss_dssp EEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSC-EEEEECCTTSTTSSCCCGGGTTTTC
T ss_pred EeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCe-EEEEeCCCCCCCCCCcccccccccc
Confidence 9998 68999998543 35678999988876 9999999999999999996 9999999999999987654 34
Q ss_pred ccEEeeecccccEEEEEecCceEEEEecCCcEEEEe------CCCCCCC---ccccccEEecCCCCCCEEEEEEcCceEE
Q psy15269 415 TPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSS---ISFHTPVLVTGLSSHQIVDVSIGDSHVL 485 (1858)
Q Consensus 415 ~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WG------LG~gss~---~~~~~P~~V~~l~~~~Iv~Ia~G~~Htl 485 (1858)
.|..+.. .+|++|+||.+|++||+++|+||+|| +|.+... .....|+.+..+.+.+|++|+||.+|++
T Consensus 250 ~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~ 326 (473)
T 3of7_A 250 DPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSL 326 (473)
T ss_dssp SCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEE
T ss_pred CceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCeEE
Confidence 6666543 56999999999999999999999999 5554432 2456799999888889999999999999
Q ss_pred EEEeCCeEEEEeCCCCCCCCCCCCC-------------CCcccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEee
Q psy15269 486 ALSQYNEVYAWGSNTMGQCGQDNFS-------------NPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSA 552 (1858)
Q Consensus 486 ALt~dG~VYaWG~N~~GQLG~G~~~-------------~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~W 552 (1858)
+|+++|+||+||.|.+||||.+... .....|..+..+. +|++|+||.+|+++++ ++|++|+|
T Consensus 327 ~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~al~---~~G~vy~w 401 (473)
T 3of7_A 327 ILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVAVA---QNGIAYSW 401 (473)
T ss_dssp EEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEEEEE---TTSCEEEE
T ss_pred EEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEEEEeCCCeEEEEe---CCCcEEEe
Confidence 9999999999999999999987531 1123566665543 6999999999999999 89999999
Q ss_pred ccCcccccCCcc
Q psy15269 553 FTPLCVDVRPHT 564 (1858)
Q Consensus 553 G~n~~gqLg~~t 564 (1858)
|.|..+|||.+.
T Consensus 402 G~n~~GqLG~g~ 413 (473)
T 3of7_A 402 GFGETYAVGLGP 413 (473)
T ss_dssp ECCTTCTTCCCS
T ss_pred eCCCCCCCCCCC
Confidence 999999999865
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-43 Score=410.22 Aligned_cols=269 Identities=26% Similarity=0.386 Sum_probs=215.0
Q ss_pred CeEEEEcCCCCCCCCcCCCCCcccccccCCCCCeEEEEEcCCEEEEEecCCcEEEEcccccCCCCCCCCCCceeecCccC
Q psy15269 188 SKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAA 267 (1858)
Q Consensus 188 g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~~IkqVA~G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~~~ 267 (1858)
.+||+||+|...++. |.......+|++|+||..|+++|+ ||+||+||.|..|+-. .|...
T Consensus 2 ~~v~~WG~n~~~~~~---------~~p~~~~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg-----~p~~~----- 61 (282)
T 3qhy_B 2 TSVVAWGGNNDWGEA---------TVPAEAQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLT-----MPAAT----- 61 (282)
T ss_dssp CEEEEECSCCTTSTT---------CCCGGGSSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTS-----CCGGG-----
T ss_pred eEEEEeCCCCCcCcc---------cCCccccCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCC-----CCccC-----
Confidence 469999999765543 122333458999999999999998 9999999998444211 12211
Q ss_pred cceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEe
Q psy15269 268 IVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWG 347 (1858)
Q Consensus 268 i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG 347 (1858)
..+|++|+||.+|+++|+ ||+||+||.|.+||||. |..+. .+|++|+||.+|+++|+ +|+||+||
T Consensus 62 ~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~--------P~~~~-----~~v~~ia~G~~hs~al~-~G~v~~wG 126 (282)
T 3qhy_B 62 QSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV--------PAEAR-----SGVDAIAAGAWASYALK-DGKVIAWG 126 (282)
T ss_dssp GSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------CGGGS-----SSEEEEEEETTEEEEEE-TTEEEEEE
T ss_pred CCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC--------CcccC-----CCeEEEECcCCEEEEEe-CCeEEEec
Confidence 235666779999999996 99999999999999985 44332 46999999999999999 99999999
Q ss_pred cCCCCCCCCCCCCccccccccccCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccE
Q psy15269 348 EGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRV 427 (1858)
Q Consensus 348 ~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I 427 (1858)
.|.+||||.. .....+|++|+||..|+++++ +|+ ||+||.|.+||+|. |.. ...+|
T Consensus 127 ~n~~gqlg~~----------~~~~~~i~~i~~G~~~~~~l~-~G~-v~~wG~n~~gqlg~--------p~~----~~~~v 182 (282)
T 3qhy_B 127 DDSDGQTTVP----------AEAQSGVTALDGGVYTALAVK-NGG-VIAWGDNYFGQTTV--------PAE----AQSGV 182 (282)
T ss_dssp CCTTSTTSCC----------GGGGSSEEEEEECSSEEEEEE-TTE-EEEEECCTTSTTSC--------CGG----GGSSE
T ss_pred CCCCCcCCCC----------ccCCCCeEEEEcccCEEEEEE-CCE-EEEecCCCCCCCCC--------cee----cCCCe
Confidence 9999999732 223467999999999999999 894 99999999999983 221 23569
Q ss_pred EEEEecCceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCC
Q psy15269 428 RKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQD 507 (1858)
Q Consensus 428 v~IaaG~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G 507 (1858)
++|+||.+|+++| ++|+||+||.+....- -.|. +. ..+|++|+||..|+++++ +|+||+||.|.+||++..
T Consensus 183 ~~i~~G~~hs~al-~~G~v~~wG~n~~gql---g~p~--~~--~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~ 253 (282)
T 3qhy_B 183 DDVAGGIFHSLAL-KDGKVIAWGDNRYKQT---TVPT--EA--LSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ 253 (282)
T ss_dssp EEEEECSSEEEEE-ETTEEEEEECCTTSTT---CCCG--GG--GSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS
T ss_pred EEEEecCCEEEEE-ECCeEEEEECCCCCCC---CCCc--cc--CCCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC
Confidence 9999999999999 8999999993322111 0121 11 247999999999999999 999999999999998751
Q ss_pred CCCCCcccCeeeecCCCceEEEEEecCcceEEEe
Q psy15269 508 NFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYT 541 (1858)
Q Consensus 508 ~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt 541 (1858)
..|++|+||..|+++++
T Consensus 254 -----------------~~v~~iaaG~~h~~al~ 270 (282)
T 3qhy_B 254 -----------------SGVSSIEAGPNAAYALK 270 (282)
T ss_dssp -----------------SCEEEEEECSSCEEEEE
T ss_pred -----------------CCcEEEEECcCeEEEEe
Confidence 14889999999999998
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=370.04 Aligned_cols=249 Identities=25% Similarity=0.373 Sum_probs=199.3
Q ss_pred cEEEEccc-ccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeec
Q psy15269 239 GLLVYGKG-WLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMG 317 (1858)
Q Consensus 239 ~VyawG~N-qLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~ 317 (1858)
+||+||.| ..+... .|. .. ..+|++|+||..|+++|+ +|+||+||.|.+||||. |..
T Consensus 3 ~v~~WG~n~~~~~~~-----~p~--~~---~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~--------p~~--- 60 (282)
T 3qhy_B 3 SVVAWGGNNDWGEAT-----VPA--EA---QSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM--------PAA--- 60 (282)
T ss_dssp EEEEECSCCTTSTTC-----CCG--GG---SSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSC--------CGG---
T ss_pred EEEEeCCCCCcCccc-----CCc--cc---cCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCC--------Ccc---
Confidence 69999987 444321 121 11 235666779999999998 99999999999999994 221
Q ss_pred CCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCceEEeecCceEEEEEcCCCEEEEE
Q psy15269 318 GLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSM 397 (1858)
Q Consensus 318 ~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysW 397 (1858)
...+|++|+||.+|+++|+ +|+||+||.|.+||||. |..+. .+|++|+||.+|+++|+ +|+ ||+|
T Consensus 61 --~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~--------P~~~~--~~v~~ia~G~~hs~al~-~G~-v~~w 125 (282)
T 3qhy_B 61 --TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV--------PAEAR--SGVDAIAAGAWASYALK-DGK-VIAW 125 (282)
T ss_dssp --GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------CGGGS--SSEEEEEEETTEEEEEE-TTE-EEEE
T ss_pred --CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC--------CcccC--CCeEEEECcCCEEEEEe-CCe-EEEe
Confidence 1246999999999999996 99999999999999984 54443 47999999999999999 995 9999
Q ss_pred eCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEE
Q psy15269 398 GSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDV 477 (1858)
Q Consensus 398 G~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~I 477 (1858)
|.|.+||||... ....+|++|+||.+|+++++ +|+||+||.+....- ..|..+ ..+|++|
T Consensus 126 G~n~~gqlg~~~------------~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gql---g~p~~~----~~~v~~i 185 (282)
T 3qhy_B 126 GDDSDGQTTVPA------------EAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQT---TVPAEA----QSGVDDV 185 (282)
T ss_dssp ECCTTSTTSCCG------------GGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTT---SCCGGG----GSSEEEE
T ss_pred cCCCCCcCCCCc------------cCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCC---CCceec----CCCeEEE
Confidence 999999998421 12346999999999999999 899999994322211 123222 3589999
Q ss_pred EEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEeeccCcc
Q psy15269 478 SIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAFTPLC 557 (1858)
Q Consensus 478 a~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~WG~n~~ 557 (1858)
+||.+|++++ ++|+||+||.|.+||||.+. + .+ .+|++|+||.+|+++++ +|++|+||.|..
T Consensus 186 ~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~---------~--~~--~~v~~i~~G~~h~~al~----~g~v~~wG~n~~ 247 (282)
T 3qhy_B 186 AGGIFHSLAL-KDGKVIAWGDNRYKQTTVPT---------E--AL--SGVSAIASGEWYSLALK----NGKVIAWGSSRT 247 (282)
T ss_dssp EECSSEEEEE-ETTEEEEEECCTTSTTCCCG---------G--GG--SSCCEEEECSSCEEEEE----TTEEEEESTTCC
T ss_pred EecCCEEEEE-ECCeEEEEECCCCCCCCCCc---------c--cC--CCceEEEcCCCEEEEEE----CCEEEEecCCCC
Confidence 9999999999 89999999999999998542 1 11 24889999999999996 899999999988
Q ss_pred cccCC
Q psy15269 558 VDVRP 562 (1858)
Q Consensus 558 gqLg~ 562 (1858)
++++-
T Consensus 248 gq~~v 252 (282)
T 3qhy_B 248 APSSV 252 (282)
T ss_dssp CCGGG
T ss_pred ccccC
Confidence 76653
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=355.02 Aligned_cols=312 Identities=21% Similarity=0.260 Sum_probs=265.6
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|++..+.+-+... ......+.++.|+|+||.|+-..+..+..... ++..+++||....
T Consensus 108 ~a~~lpil~~l~~~~~~~------~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~-----------~~~~~~~gg~~~~ 170 (434)
T 2db3_A 108 AAFLLPILSKLLEDPHEL------ELGRPQVVIVSPTRELAIQIFNEARKFAFESY-----------LKIGIVYGGTSFR 170 (434)
T ss_dssp HHHHHHHHHHHHHSCCCC------CTTCCSEEEECSSHHHHHHHHHHHHHHTTTSS-----------CCCCEECTTSCHH
T ss_pred HHHHHHHHHHHHhccccc------ccCCccEEEEecCHHHHHHHHHHHHHHhccCC-----------cEEEEEECCCCHH
Confidence 456777777776543221 12334579999999999999998887766544 3557889999988
Q ss_pred hhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHh--HHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVV--NKF 996 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~L--pk~ 996 (1858)
.+...+.++.+++++||+++++ ..+.........+|+|||++ |.++||.++ ++.|++.+ ++.
T Consensus 171 ~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~----------~~~~gf~~~----~~~i~~~~~~~~~ 236 (434)
T 2db3_A 171 HQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADR----------MLDMGFSED----MRRIMTHVTMRPE 236 (434)
T ss_dssp HHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHH----------HTSTTTHHH----HHHHHHCTTSCSS
T ss_pred HHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhh----------hhccCcHHH----HHHHHHhcCCCCC
Confidence 8888888899999999999986 33344455666778888887 999999999 99998875 466
Q ss_pred HHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCC--cccEEEEEEECChhhHHH
Q psy15269 997 RAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSS--VHLVKQYLIRTPKSQKIV 1074 (1858)
Q Consensus 997 RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~--~~~I~Q~~~~v~~~~Kl~ 1074 (1858)
||+++| |||+|+.++++++.++++|+.+.+.... ...+.|.++.++..+|..
T Consensus 237 ~q~l~~--------------------------SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 290 (434)
T 2db3_A 237 HQTLMF--------------------------SATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRS 290 (434)
T ss_dssp CEEEEE--------------------------ESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHH
T ss_pred ceEEEE--------------------------eccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHH
Confidence 788888 9999999999999999999999886543 345999999999999999
Q ss_pred HHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCC
Q psy15269 1075 NLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFT 1152 (1858)
Q Consensus 1075 ~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp 1152 (1858)
.|++++.. .++||||+|++.|+.+++.|++.|+++..+||+++ |.+|.+++++|++|+.+||||||+++||||+|
T Consensus 291 ~l~~~l~~~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~---~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~ 367 (434)
T 2db3_A 291 KLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRL---QSQREQALRDFKNGSMKVLIATSVASRGLDIK 367 (434)
T ss_dssp HHHHHHHHCCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSC---HHHHHHHHHHHHTSSCSEEEECGGGTSSCCCT
T ss_pred HHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCC---HHHHHHHHHHHHcCCCcEEEEchhhhCCCCcc
Confidence 99988864 66999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CcceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCCCCCCCccc
Q psy15269 1153 NVEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTHPHA 1212 (1858)
Q Consensus 1153 ~V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~~~ 1212 (1858)
+|++|||||+|.++++|+||+ +| .|.+++|+++.++..+++.|.+.++...+++|+++.+
T Consensus 368 ~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 368 NIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp TCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred cCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 999999999999999999999 22 2389999997678899999999999999999986543
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-28 Score=294.47 Aligned_cols=287 Identities=18% Similarity=0.206 Sum_probs=243.1
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~ 946 (1858)
..+.++-|+|+||.|+-+.+..+.....+ +...+.||.....+...+..+.++++.||+++++ ..+.
T Consensus 106 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-----------~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~ 174 (410)
T 2j0s_A 106 TQALILAPTRELAVQIQKGLLALGDYMNV-----------QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS 174 (410)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTC-----------CEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhccCCe-----------EEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCC
Confidence 35689999999999999888776655544 3356688988888888888888999999999886 2333
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNS 1026 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~ 1026 (1858)
........+|+|||++ |.+.||... +..|++.+++.+|.+++
T Consensus 175 ~~~~~~~~vViDEah~----------~~~~~~~~~----~~~i~~~~~~~~~~i~~------------------------ 216 (410)
T 2j0s_A 175 LRTRAIKMLVLDEADE----------MLNKGFKEQ----IYDVYRYLPPATQVVLI------------------------ 216 (410)
T ss_dssp SCCTTCCEEEEETHHH----------HTSTTTHHH----HHHHHTTSCTTCEEEEE------------------------
T ss_pred ccHhheeEEEEccHHH----------HHhhhhHHH----HHHHHHhCccCceEEEE------------------------
Confidence 3334456677888877 888999888 99998888888888888
Q ss_pred CCCCCCcHhHHHHHHHhcCCCEEEEEccC--CcccEEEEEEECChhh-HHHHHHHhhc---CCcEEEEecChHHHHHHHH
Q psy15269 1027 TDSLFSWGDIEEESNIEVEDPIMKLVKPS--SVHLVKQYLIRTPKSQ-KIVNLLSFLE---GKRSLIFVKTYRDASRIIS 1100 (1858)
Q Consensus 1027 ~eSAT~p~~I~~la~~~L~dpv~I~v~~~--~~~~I~Q~~~~v~~~~-Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~ 1100 (1858)
|||+|..+.++++.++.+|+.+.+... ....+.|.+..++..+ |...+..++. ..++||||+|++.++.+++
T Consensus 217 --SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~ 294 (410)
T 2j0s_A 217 --SATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTE 294 (410)
T ss_dssp --ESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHH
T ss_pred --EcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHH
Confidence 999999999999999999999877543 3345888888876544 7777776664 3799999999999999999
Q ss_pred HHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhcc------
Q psy15269 1101 AVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIA------ 1174 (1858)
Q Consensus 1101 ~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIa------ 1174 (1858)
.|++.|+.+..+||+++ +.+|.+++++|++|+.+||||||+++||+|+|++++|||||+|.+++.|+||+|
T Consensus 295 ~L~~~~~~~~~~h~~~~---~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g 371 (410)
T 2j0s_A 295 KMREANFTVSSMHGDMP---QKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYG 371 (410)
T ss_dssp HHHHTTCCCEEECTTSC---HHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGG
T ss_pred HHHhCCCceEEeeCCCC---HHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCC
Confidence 99999999999999999 999999999999999999999999999999999999999999999999999992
Q ss_pred CcceEEEEecCcccHHHHHHHHHHHhhcCCCCCCCc
Q psy15269 1175 GHKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTHP 1210 (1858)
Q Consensus 1175 g~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~ 1210 (1858)
..+.+++|+++ +|...++.|+++++....++|...
T Consensus 372 ~~g~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~ 406 (410)
T 2j0s_A 372 RKGVAINFVKN-DDIRILRDIEQYYSTQIDEMPMNV 406 (410)
T ss_dssp CCEEEEEEEEG-GGHHHHHHHHHHTTCCCEECCSCC
T ss_pred CceEEEEEecH-HHHHHHHHHHHHhCCCceecccch
Confidence 23389999998 899999999999999888887543
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=290.43 Aligned_cols=285 Identities=19% Similarity=0.266 Sum_probs=238.4
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~ 946 (1858)
..+.++-|+|+||.|+-+.+..+.....+ +...+.||.....+..++.+..++++.||.+++. ..+.
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-----------~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~ 170 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRV-----------RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK 170 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSC-----------CEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCc-----------eEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCC
Confidence 34689999999999999888776554443 4567789988888888888889999999999985 2222
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHH--hHH--HHHHHhhhccCCCCccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSV--VNK--FRAELLSAVSNAPSFDDNNVSMGVTST 1022 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~--Lpk--~RQtLLf~~~~~~s~~~~~~s~~~~~~ 1022 (1858)
........+|+|||++ +.+.||.+. ++.|+.. +++ .+|.+++
T Consensus 171 ~~~~~~~~iViDEah~----------~~~~~~~~~----~~~i~~~~~~~~~~~~~~i~~-------------------- 216 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADR----------MLDMGFEPQ----IRRIVEQDTMPPKGVRHTMMF-------------------- 216 (417)
T ss_dssp BCCTTCCEEEESSHHH----------HHHTTCHHH----HHHHHTSSSCCCBTTBEEEEE--------------------
T ss_pred cChhhCcEEEEEChhH----------hhccCcHHH----HHHHHHhccCCCcCCcEEEEE--------------------
Confidence 2334455677888877 888898888 7777653 221 3344555
Q ss_pred ccccCCCCCCcHhHHHHHHHhcCCCEEEEEccC--CcccEEEEEEECChhhHHHHHHHhhcC----CcEEEEecChHHHH
Q psy15269 1023 QHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPS--SVHLVKQYLIRTPKSQKIVNLLSFLEG----KRSLIFVKTYRDAS 1096 (1858)
Q Consensus 1023 ~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~--~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~----~k~IIFvnTk~~ad 1096 (1858)
|||+|..++++++.++.+|+.+.+... ....+.+.++.++..+|...+.++++. .++||||+|++.++
T Consensus 217 ------SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~ 290 (417)
T 2i4i_A 217 ------SATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGAD 290 (417)
T ss_dssp ------ESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHH
T ss_pred ------EEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHH
Confidence 999999999999999999998877543 344589999999999998888888763 68999999999999
Q ss_pred HHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc---
Q psy15269 1097 RIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI--- 1173 (1858)
Q Consensus 1097 ~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI--- 1173 (1858)
.+++.|++.|+.+..+||+++ +.+|.+++++|++|+.+||||||+++||+|+|++++||+||+|.++++|+||+
T Consensus 291 ~l~~~L~~~~~~~~~~h~~~~---~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~ 367 (417)
T 2i4i_A 291 SLEDFLYHEGYACTSIHGDRS---QRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRT 367 (417)
T ss_dssp HHHHHHHHTTCCEEEECTTSC---HHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTB
T ss_pred HHHHHHHHCCCCeeEecCCCC---HHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCcc
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred c--C-cceEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1174 A--G-HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1174 a--g-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
+ | .+.+++|+++ .|...++.|.+.++...+++|.
T Consensus 368 gR~g~~g~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~ 404 (417)
T 2i4i_A 368 GRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVPS 404 (417)
T ss_dssp CC--CCEEEEEEECG-GGGGGHHHHHHHHHHTTCCCCH
T ss_pred ccCCCCceEEEEEcc-ccHHHHHHHHHHHHHhcCcCCH
Confidence 2 2 2389999998 8889999999999998888875
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-26 Score=291.78 Aligned_cols=306 Identities=14% Similarity=0.149 Sum_probs=235.8
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|++..+.+-.... .....+.++-|+|+||.|+-..+..+..... ....+....+.||....
T Consensus 75 l~~~lpil~~l~~~~~~~-------~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~-------~~~~~~~~~~~gg~~~~ 140 (579)
T 3sqw_A 75 FAFLIPIFQHLINTKFDS-------QYMVKAVIVAPTRDLALQIEAEVKKIHDMNY-------GLKKYACVSLVGGTDFR 140 (579)
T ss_dssp HHHHHHHHHHHHHTTTSS-------TTSCCEEEECSSHHHHHHHHHHHHHHHHHCG-------GGTTSCEEEECTTSCHH
T ss_pred HHHHHHHHHHHHhccccc-------cCCCeEEEEcchHHHHHHHHHHHHHHHhhcc-------cccceEEEEEECCccHH
Confidence 446677777776543211 1233468999999999999888776532110 00112345678888877
Q ss_pred hhhhhhhh-hcccccccccccccCcc---ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHH
Q psy15269 921 TAIIDIDK-FVRDMRHVSNNILMSPN---YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKF 996 (1858)
Q Consensus 921 ~q~~dl~~-~v~~l~~t~~~ll~~~~---~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~ 996 (1858)
.+...+.+ ..++++.||+++++... .........+|+|||++ |.++||.++ ++.|+..+++.
T Consensus 141 ~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~----------l~~~gf~~~----~~~i~~~l~~~ 206 (579)
T 3sqw_A 141 AAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR----------LLEIGFRDD----LETISGILNEK 206 (579)
T ss_dssp HHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH----------HTSTTTHHH----HHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH----------hhcCCCHHH----HHHHHHHhhhh
Confidence 77777765 68899999999986221 12223345567888877 999999999 99999999886
Q ss_pred H-------HHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEcc------CCcccEEEE
Q psy15269 997 R-------AELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKP------SSVHLVKQY 1063 (1858)
Q Consensus 997 R-------QtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~------~~~~~I~Q~ 1063 (1858)
+ |++++ |||+|+.++++++.++.+|..+.+.. .....+.+.
T Consensus 207 ~~~~~~~~~~l~~--------------------------SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (579)
T 3sqw_A 207 NSKSADNIKTLLF--------------------------SATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQS 260 (579)
T ss_dssp CSSCTTCCEEEEE--------------------------ESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEE
T ss_pred hcccccCceEEEE--------------------------eccCChHHHHHHHHHcCCCceEEEeecCccccccccccceE
Confidence 5 57777 99999999999999999998776642 122347777
Q ss_pred EEECChh-hH----HHHHHHhhc----CCcEEEEecChHHHHHHHHHHhhC---CCeEEEEecCCCCccHHHHHHHHHHH
Q psy15269 1064 LIRTPKS-QK----IVNLLSFLE----GKRSLIFVKTYRDASRIISAVQDS---NMMTIPMSNNGTSWSHVECLELLNLF 1131 (1858)
Q Consensus 1064 ~~~v~~~-~K----l~~Ll~lL~----~~k~IIFvnTk~~ad~L~~~L~~~---g~~~~~LHG~ms~~~Q~eR~~~L~~F 1131 (1858)
+..++.. .+ +..+...+. ..++||||+|++.|+.+++.|++. ++.+..+||+|+ +.+|.+++++|
T Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~---~~~R~~~~~~F 337 (579)
T 3sqw_A 261 VVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKIT---QNKRTSLVKRF 337 (579)
T ss_dssp EEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSC---HHHHHHHHHHH
T ss_pred EEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCC---HHHHHHHHHHh
Confidence 7766542 22 233333332 378999999999999999999986 999999999999 99999999999
Q ss_pred hcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCC
Q psy15269 1132 NTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNK 1204 (1858)
Q Consensus 1132 r~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q 1204 (1858)
++|+.+||||||+++||||+|+|++|||||+|.+++.|+||+ +| .+.+++|+++ .|..+++.|++..+....
T Consensus 338 ~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~-~e~~~~~~l~~~~~~~~~ 415 (579)
T 3sqw_A 338 KKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICK-DELPFVRELEDAKNIVIA 415 (579)
T ss_dssp HHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEG-GGHHHHHHHHHHHCCCCC
T ss_pred hcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcc-cHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999999999 22 2389999998 899999999988765544
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-26 Score=279.84 Aligned_cols=288 Identities=18% Similarity=0.210 Sum_probs=230.2
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhh-hhccccccccccccc--Ccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDID-KFVRDMRHVSNNILM--SPN 945 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~-~~v~~l~~t~~~ll~--~~~ 945 (1858)
..+.++-|+|+||.|+-+.+..+...... +.....||.....+...+. ...++++.||+++++ ..+
T Consensus 109 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~ 177 (414)
T 3eiq_A 109 TQALVLAPTRELAQQIQKVVMALGDYMGA-----------SCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR 177 (414)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHGGGSCC-----------CEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHT
T ss_pred eeEEEEeChHHHHHHHHHHHHHHhcccCc-----------eEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 34689999999999999888776655444 2345677877666666666 467889999999885 333
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
+........+|+|||++ +.+.+|... +..|+..+++.+|.+++
T Consensus 178 ~~~~~~~~~vViDEah~----------~~~~~~~~~----~~~~~~~~~~~~~~i~~----------------------- 220 (414)
T 3eiq_A 178 YLSPKYIKMFVLDEADE----------MLSRGFKDQ----IYDIFQKLNSNTQVVLL----------------------- 220 (414)
T ss_dssp SSCSTTCCEEEECSHHH----------HHHTTTHHH----HHHHHTTSCTTCEEEEE-----------------------
T ss_pred CcccccCcEEEEECHHH----------hhccCcHHH----HHHHHHhCCCCCeEEEE-----------------------
Confidence 33344455677888877 788899888 99998888888888888
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc--ccEEEEEEECChhh-HHHHHHHhhcC---CcEEEEecChHHHHHHH
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSSV--HLVKQYLIRTPKSQ-KIVNLLSFLEG---KRSLIFVKTYRDASRII 1099 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~--~~I~Q~~~~v~~~~-Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~ 1099 (1858)
|||+|..+.++++.++.+|..+.+..... ..+.+.++.+...+ |+..+..++.. .++||||++++.++.++
T Consensus 221 ---SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 297 (414)
T 3eiq_A 221 ---SATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLT 297 (414)
T ss_dssp ---CSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHH
T ss_pred ---EEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHH
Confidence 99999999999999999999987754433 34788888776544 77777777654 78999999999999999
Q ss_pred HHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccC----
Q psy15269 1100 SAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAG---- 1175 (1858)
Q Consensus 1100 ~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag---- 1175 (1858)
+.|++.++.+..+||+++ +.+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|.++.+|+||+|+
T Consensus 298 ~~l~~~~~~~~~~h~~~~---~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~ 374 (414)
T 3eiq_A 298 EKMHARDFTVSAMHGDMD---QKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRF 374 (414)
T ss_dssp HHHHTTTCCCEEC---CH---HHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC---
T ss_pred HHHHhcCCeEEEecCCCC---HHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCC
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999922
Q ss_pred --cceEEEEecCcccHHHHHHHHHHHhhcCCCCCCCcc
Q psy15269 1176 --HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTHPH 1211 (1858)
Q Consensus 1176 --~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~~ 1211 (1858)
.+.++.|+++ .+...++.++++++....++|..+.
T Consensus 375 g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (414)
T 3eiq_A 375 GRKGVAINMVTE-EDKRTLRDIETFYNTSIEEMPLNVA 411 (414)
T ss_dssp ----CEEEEECS-THHHHHHHHHHHTTCCCEECCC---
T ss_pred CCCceEEEEEcH-HHHHHHHHHHHHHcCCccccChhhh
Confidence 2379999998 8999999999999999888886543
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=285.22 Aligned_cols=307 Identities=15% Similarity=0.148 Sum_probs=235.2
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|++..+.+-.... .....++++-|+|+||.|+-..+..+..... ...-+....+.||....
T Consensus 126 l~~~lpil~~l~~~~~~~-------~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~ 191 (563)
T 3i5x_A 126 FAFLIPIFQHLINTKFDS-------QYMVKAVIVAPTRDLALQIEAEVKKIHDMNY-------GLKKYACVSLVGGTDFR 191 (563)
T ss_dssp HHHHHHHHHHHHHTTTSS-------TTSCCEEEECSSHHHHHHHHHHHHHHHHHCG-------GGTTSCEEEECTTSCHH
T ss_pred HHHHHHHHHHHHhccccc-------cCCeeEEEEcCcHHHHHHHHHHHHHHHhhcc-------ccCceeEEEEECCcCHH
Confidence 446777777776543221 1233468999999999999888776532110 00112345678888877
Q ss_pred hhhhhhhh-hcccccccccccccCcc---ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHH
Q psy15269 921 TAIIDIDK-FVRDMRHVSNNILMSPN---YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKF 996 (1858)
Q Consensus 921 ~q~~dl~~-~v~~l~~t~~~ll~~~~---~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~ 996 (1858)
.+...+.+ ..++++.||+++++... .........+|+|||++ |.++||.++ ++.|+..+++.
T Consensus 192 ~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~----------l~~~~f~~~----~~~i~~~l~~~ 257 (563)
T 3i5x_A 192 AAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR----------LLEIGFRDD----LETISGILNEK 257 (563)
T ss_dssp HHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH----------HTSTTTHHH----HHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH----------HhccchHHH----HHHHHHhhhhc
Confidence 77777755 68899999999986221 11223345567888877 999999999 99999999876
Q ss_pred H-------HHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccC------CcccEEEE
Q psy15269 997 R-------AELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPS------SVHLVKQY 1063 (1858)
Q Consensus 997 R-------QtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~------~~~~I~Q~ 1063 (1858)
+ |++++ |||+|..++++++.++.+|..+.+... ....+.+.
T Consensus 258 ~~~~~~~~~~l~~--------------------------SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (563)
T 3i5x_A 258 NSKSADNIKTLLF--------------------------SATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQS 311 (563)
T ss_dssp CSSCTTCCEEEEE--------------------------ESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEE
T ss_pred cccCccCceEEEE--------------------------EccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceE
Confidence 5 46677 999999999999999999987765322 22337777
Q ss_pred EEECChh-hHH----HHHHHhhc----CCcEEEEecChHHHHHHHHHHhhC---CCeEEEEecCCCCccHHHHHHHHHHH
Q psy15269 1064 LIRTPKS-QKI----VNLLSFLE----GKRSLIFVKTYRDASRIISAVQDS---NMMTIPMSNNGTSWSHVECLELLNLF 1131 (1858)
Q Consensus 1064 ~~~v~~~-~Kl----~~Ll~lL~----~~k~IIFvnTk~~ad~L~~~L~~~---g~~~~~LHG~ms~~~Q~eR~~~L~~F 1131 (1858)
+...+.. .+. ..+...+. ..++||||+|++.|+.+++.|++. ++.+..+||+|+ +.+|.+++++|
T Consensus 312 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~---~~~R~~~~~~f 388 (563)
T 3i5x_A 312 VVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKIT---QNKRTSLVKRF 388 (563)
T ss_dssp EEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSC---HHHHHHHHHHH
T ss_pred EEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCC---HHHHHHHHHHH
Confidence 7766542 332 22333332 379999999999999999999976 999999999999 99999999999
Q ss_pred hcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhcc-----C-cceEEEEecCcccHHHHHHHHHHHhhcCCC
Q psy15269 1132 NTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIA-----G-HKEAIAFYDPVADIGLASSLIKLLEYSNKH 1205 (1858)
Q Consensus 1132 r~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIa-----g-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ 1205 (1858)
++|+.+||||||+++||||+|+|++|||||+|.++++|+||+| | .+.++.|+++ .|..+++.|++..+.....
T Consensus 389 ~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~-~e~~~~~~l~~~~~~~~~~ 467 (563)
T 3i5x_A 389 KKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICK-DELPFVRELEDAKNIVIAK 467 (563)
T ss_dssp HHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEG-GGHHHHHHHHHHHCCCCCE
T ss_pred hcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEch-hHHHHHHHHHHHhCCCccc
Confidence 9999999999999999999999999999999999999999992 2 2389999998 8999999999887665443
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-25 Score=269.62 Aligned_cols=288 Identities=15% Similarity=0.118 Sum_probs=235.3
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.++-|+|+|+.|+-+.+..+.....+ +...+.||.....+...+....++++.||.+++. ...+.
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~-----------~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~ 159 (400)
T 1s2m_A 91 QALIMVPTRELALQTSQVVRTLGKHCGI-----------SCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVA 159 (400)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTC-----------CEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCS
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhcccCc-----------eEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCc
Confidence 4688999999999999888777655443 3355677776655555565677889999999875 33344
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccC
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNST 1027 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~ 1027 (1858)
.......+++|||++ +.+.+|... ++.|+..+++.++.+++
T Consensus 160 ~~~~~~~vIiDEaH~----------~~~~~~~~~----~~~i~~~~~~~~~~i~l------------------------- 200 (400)
T 1s2m_A 160 DLSDCSLFIMDEADK----------MLSRDFKTI----IEQILSFLPPTHQSLLF------------------------- 200 (400)
T ss_dssp CCTTCCEEEEESHHH----------HSSHHHHHH----HHHHHTTSCSSCEEEEE-------------------------
T ss_pred ccccCCEEEEeCchH----------hhhhchHHH----HHHHHHhCCcCceEEEE-------------------------
Confidence 445556678999987 555555555 77776666655666666
Q ss_pred CCCCCcHhHHHHHHHhcCCCEEEEEccC-CcccEEEEEEECChhhHHHHHHHhhc---CCcEEEEecChHHHHHHHHHHh
Q psy15269 1028 DSLFSWGDIEEESNIEVEDPIMKLVKPS-SVHLVKQYLIRTPKSQKIVNLLSFLE---GKRSLIFVKTYRDASRIISAVQ 1103 (1858)
Q Consensus 1028 eSAT~p~~I~~la~~~L~dpv~I~v~~~-~~~~I~Q~~~~v~~~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~ 1103 (1858)
|||+|..+.+....++.+|..+.+... ....+.+++..++...|...+..+++ ..++||||++++.++.+++.|+
T Consensus 201 -SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~ 279 (400)
T 1s2m_A 201 -SATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKIT 279 (400)
T ss_dssp -ESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHH
T ss_pred -EecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHH
Confidence 999999999999999999988766433 33458899989988888877777664 4799999999999999999999
Q ss_pred hCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc---c---Ccc
Q psy15269 1104 DSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI---A---GHK 1177 (1858)
Q Consensus 1104 ~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI---a---g~~ 1177 (1858)
+.|+.+..+||+++ +.+|..++++|++|+.+|||||+++++|+|+|++++||+||+|.++..|+||+ + ..+
T Consensus 280 ~~~~~~~~~~~~~~---~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g 356 (400)
T 1s2m_A 280 DLGYSCYYSHARMK---QQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG 356 (400)
T ss_dssp HHTCCEEEECTTSC---HHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE
T ss_pred hcCCCeEEecCCCC---HHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCc
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999 2 223
Q ss_pred eEEEEecCcccHHHHHHHHHHHhhcCCCCCCCccc
Q psy15269 1178 EAIAFYDPVADIGLASSLIKLLEYSNKHVPTHPHA 1212 (1858)
Q Consensus 1178 ~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~~~ 1212 (1858)
.++.|+++ +|...++.|++.++...+++|....+
T Consensus 357 ~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~ 390 (400)
T 1s2m_A 357 LAINLINW-NDRFNLYKIEQELGTEIAAIPATIDK 390 (400)
T ss_dssp EEEEEECG-GGHHHHHHHHHHHTCCCEECCSSCCG
T ss_pred eEEEEecc-chHHHHHHHHHHhCCCcccccccccc
Confidence 89999998 88899999999999988888865443
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-25 Score=266.68 Aligned_cols=288 Identities=17% Similarity=0.206 Sum_probs=235.9
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhh-ccccccccccccc--Ccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKF-VRDMRHVSNNILM--SPN 945 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~-v~~l~~t~~~ll~--~~~ 945 (1858)
..+.++-|+|+|+.|+-+.+..+....|- ++...+.||.....+...+.++ .++++.||.+++. ...
T Consensus 77 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~ 146 (391)
T 1xti_A 77 VSVLVMCHTRELAFQISKEYERFSKYMPN----------VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK 146 (391)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTCTT----------CCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT
T ss_pred eeEEEECCCHHHHHHHHHHHHHHHhhCCC----------eEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 34689999999999998887766554321 2446678888766666666654 6789999999885 222
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhh-cCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQ-TALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQH 1024 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~-mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~ 1024 (1858)
.........+|+|||++ +.+ ++|... +..++...++.+|.+++
T Consensus 147 ~~~~~~~~~vViDEaH~----------~~~~~~~~~~----~~~~~~~~~~~~~~i~~---------------------- 190 (391)
T 1xti_A 147 SLNLKHIKHFILDECDK----------MLEQLDMRRD----VQEIFRMTPHEKQVMMF---------------------- 190 (391)
T ss_dssp SSCCTTCSEEEECSHHH----------HTSSHHHHHH----HHHHHHTSCSSSEEEEE----------------------
T ss_pred CccccccCEEEEeCHHH----------HhhccchHHH----HHHHHhhCCCCceEEEE----------------------
Confidence 23334556677898877 444 456566 77777777766677777
Q ss_pred ccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc---ccEEEEEEECChhhHHHHHHHhhc---CCcEEEEecChHHHHHH
Q psy15269 1025 NSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV---HLVKQYLIRTPKSQKIVNLLSFLE---GKRSLIFVKTYRDASRI 1098 (1858)
Q Consensus 1025 ~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~---~~I~Q~~~~v~~~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L 1098 (1858)
|||+|..++++++.++.+|..+.+..... ..+.+++..++..+|...+..+++ ..++||||++++.++.+
T Consensus 191 ----SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l 266 (391)
T 1xti_A 191 ----SATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIAL 266 (391)
T ss_dssp ----ESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHH
T ss_pred ----EeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHH
Confidence 99999999999999999999987765432 347888888888888887777764 48999999999999999
Q ss_pred HHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc---c-
Q psy15269 1099 ISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI---A- 1174 (1858)
Q Consensus 1099 ~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI---a- 1174 (1858)
++.|++.|+.+..+||+++ +.+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|.++..|+||+ +
T Consensus 267 ~~~L~~~~~~~~~~~~~~~---~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R 343 (391)
T 1xti_A 267 AQLLVEQNFPAIAIHRGMP---QEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGR 343 (391)
T ss_dssp HHHHHHTTCCEEEECTTSC---HHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSS
T ss_pred HHHHHhCCCcEEEEeCCCC---HHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccC
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999 2
Q ss_pred --CcceEEEEecCcccHHHHHHHHHHHhhcCCCCCCC
Q psy15269 1175 --GHKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTH 1209 (1858)
Q Consensus 1175 --g~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~ 1209 (1858)
..+.++.|+++.++..+++.+++.++...+++|..
T Consensus 344 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 344 FGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp SCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 22389999998667889999999998888888753
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=262.45 Aligned_cols=283 Identities=17% Similarity=0.171 Sum_probs=225.0
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc---Cccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM---SPNY 946 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~---~~~~ 946 (1858)
.+.++-|+|+||.|+.+.+..+....+- ++.....||....... ....++++.||+++++ ....
T Consensus 97 ~~lil~P~~~L~~q~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~ 163 (412)
T 3fht_A 97 QCLCLSPTYELALQTGKVIEQMGKFYPE----------LKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKF 163 (412)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTT----------CCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCS
T ss_pred CEEEECCCHHHHHHHHHHHHHHHhhccc----------ceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCC
Confidence 4688999999999998887776554321 2233445554322211 2345789999999986 3234
Q ss_pred cccccccceeecccchhhhhhHHhhhhhh-cCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQ-TALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~-mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
........+|+|||++ +.+ .+|... +..|++.+++.+|.+++
T Consensus 164 ~~~~~~~~iViDEah~----------~~~~~~~~~~----~~~~~~~~~~~~~~i~~----------------------- 206 (412)
T 3fht_A 164 IDPKKIKVFVLDEADV----------MIATQGHQDQ----SIRIQRMLPRNCQMLLF----------------------- 206 (412)
T ss_dssp SCGGGCCEEEEETHHH----------HHSTTTTHHH----HHHHHHTSCTTCEEEEE-----------------------
T ss_pred cChhhCcEEEEeCHHH----------HhhcCCcHHH----HHHHHhhCCCCceEEEE-----------------------
Confidence 4445566677888877 555 677777 78888888777788888
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCC--cccEEEEEEECCh-hhHHHHHHHhhc---CCcEEEEecChHHHHHHH
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSS--VHLVKQYLIRTPK-SQKIVNLLSFLE---GKRSLIFVKTYRDASRII 1099 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~--~~~I~Q~~~~v~~-~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~ 1099 (1858)
|||++..+.++++.++.+|..+.+.... ...+.+.++.++. ..|...+..++. ..++||||+|++.++.++
T Consensus 207 ---SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 283 (412)
T 3fht_A 207 ---SATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLA 283 (412)
T ss_dssp ---ESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHH
T ss_pred ---EeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHH
Confidence 9999999999999999999988775433 3348888877764 567777766664 489999999999999999
Q ss_pred HHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCC------Chhhhhhhc
Q psy15269 1100 SAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPL------SINHYVFQI 1173 (1858)
Q Consensus 1100 ~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~------~~e~YIHRI 1173 (1858)
+.|++.++.+..+||+|+ +.+|.+++++|++|+.+|||||++++||+|+|++++||+||+|. +.++|+||+
T Consensus 284 ~~L~~~~~~~~~~~~~~~---~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~ 360 (412)
T 3fht_A 284 AELSKEGHQVALLSGEMM---VEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 360 (412)
T ss_dssp HHHHHTTCCCEEECTTSC---HHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHH
T ss_pred HHHHhCCCeEEEecCCCC---HHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeeccc
Confidence 999999999999999999 99999999999999999999999999999999999999999995 568999999
Q ss_pred --c---Cc-ceEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1174 --A---GH-KEAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1174 --a---g~-~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
+ |+ +.++.|+++.++...++.|++.++....+++.
T Consensus 361 GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 361 GRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp TTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred CcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 2 22 38999999866789999999999988777664
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-24 Score=255.71 Aligned_cols=282 Identities=17% Similarity=0.175 Sum_probs=231.7
Q ss_pred CccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccc
Q psy15269 868 NSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPN 945 (1858)
Q Consensus 868 ~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~ 945 (1858)
...+.++-|+|+|+.++-+.+..+.....+ +...+.||.....+...+. ..++++.||.+++. ..+
T Consensus 74 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~ 141 (367)
T 1hv8_A 74 GIEAIILTPTRELAIQVADEIESLKGNKNL-----------KIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRG 141 (367)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHHCSSCC-----------CEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTT
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhCCCCc-----------eEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcC
Confidence 334688999999999999888776655443 2345667766555544443 56788999998885 222
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
.........+++|||++ +.+.+|... +..++..+++.++.+++
T Consensus 142 ~~~~~~~~~iIiDEah~----------~~~~~~~~~----~~~~~~~~~~~~~~i~~----------------------- 184 (367)
T 1hv8_A 142 TLNLKNVKYFILDEADE----------MLNMGFIKD----VEKILNACNKDKRILLF----------------------- 184 (367)
T ss_dssp CSCTTSCCEEEEETHHH----------HHTTTTHHH----HHHHHHTSCSSCEEEEE-----------------------
T ss_pred CcccccCCEEEEeCchH----------hhhhchHHH----HHHHHHhCCCCceEEEE-----------------------
Confidence 22233445577888877 778888777 88887777666666666
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhcC--CcEEEEecChHHHHHHHHHHh
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEG--KRSLIFVKTYRDASRIISAVQ 1103 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~ 1103 (1858)
|||+|..+.++++.++.++..+.... ...+.+.++.++..+|+..+..+++. .++||||++++.++.+++.|+
T Consensus 185 ---SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~ 259 (367)
T 1hv8_A 185 ---SATMPREILNLAKKYMGDYSFIKAKI--NANIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLR 259 (367)
T ss_dssp ---CSSCCHHHHHHHHHHCCSEEEEECCS--SSSSEEEEEECCGGGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHH
T ss_pred ---eeccCHHHHHHHHHHcCCCeEEEecC--CCCceEEEEEeChHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHH
Confidence 99999999999999999987776542 33678888899999999999998875 789999999999999999999
Q ss_pred hCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc---c--C-cc
Q psy15269 1104 DSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI---A--G-HK 1177 (1858)
Q Consensus 1104 ~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI---a--g-~~ 1177 (1858)
+.|+.+..+||+++ +.+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|.++.+|+||+ + | .+
T Consensus 260 ~~~~~~~~~~~~~~---~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g 336 (367)
T 1hv8_A 260 DIGFKAGAIHGDLS---QSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKG 336 (367)
T ss_dssp HTTCCEEEECSSSC---HHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCC
T ss_pred hcCCCeEEeeCCCC---HHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCcc
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999 2 2 23
Q ss_pred eEEEEecCcccHHHHHHHHHHHhhcCCCCC
Q psy15269 1178 EAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207 (1858)
Q Consensus 1178 ~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip 1207 (1858)
.++.++++ .|...++.|++.++.+..+++
T Consensus 337 ~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 337 KAISIINR-REYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp EEEEEECT-TSHHHHHHHHHHHTCCCCCBC
T ss_pred EEEEEEcH-HHHHHHHHHHHHhCCCCceec
Confidence 89999998 899999999999988776653
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-24 Score=237.79 Aligned_cols=167 Identities=22% Similarity=0.256 Sum_probs=138.6
Q ss_pred HHHhcCCCEEEEEccCCc--ccEEEEEEECChhhHHHHHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecC
Q psy15269 1040 SNIEVEDPIMKLVKPSSV--HLVKQYLIRTPKSQKIVNLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNN 1115 (1858)
Q Consensus 1040 a~~~L~dpv~I~v~~~~~--~~I~Q~~~~v~~~~Kl~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ 1115 (1858)
.-.||++|++|.++.... .+|+|+++.++..+|+..|++++.. .++||||+|++.++.+++.|++.|+.+..+||+
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 457899999998865543 4599999999999999999999975 789999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhcc------CcceEEEEecCcccH
Q psy15269 1116 GTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIA------GHKEAIAFYDPVADI 1189 (1858)
Q Consensus 1116 ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIa------g~~~aitfvt~~~e~ 1189 (1858)
|+ +.+|.+++++|++|+.+||||||+++||+|+|++++|||||+|.++++|+||+| ..+.+++|+++.++.
T Consensus 88 ~~---~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 88 KD---QEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp SC---HHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred CC---HHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 99 999999999999999999999999999999999999999999999999999992 223899999985688
Q ss_pred HHHHHHHHHHhhcCCCCCCC
Q psy15269 1190 GLASSLIKLLEYSNKHVPTH 1209 (1858)
Q Consensus 1190 ~~l~~Ie~~l~~~~q~ip~~ 1209 (1858)
.+++.|++.++...+++|+.
T Consensus 165 ~~~~~l~~~l~~~~~~~p~~ 184 (191)
T 2p6n_A 165 SVLMDLKALLLEAKQKVPPV 184 (191)
T ss_dssp HHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHHccCcCCHH
Confidence 99999999999999998863
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-26 Score=283.69 Aligned_cols=283 Identities=17% Similarity=0.177 Sum_probs=96.7
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc---Cccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM---SPNY 946 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~---~~~~ 946 (1858)
.+.++-|+|+||.|+.+.+..+....+- +......||....... ....++++.||+++++ ....
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~ 230 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPE----------LKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKF 230 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTT----------CCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCC
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCC----------ceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCC
Confidence 4689999999999998877666544221 1233444554332211 2245689999999986 3234
Q ss_pred cccccccceeecccchhhhhhHHhhhhhh-cCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQ-TALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~-mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
........+|+||+++ |.+ .||... +..|++.+++.+|.+++
T Consensus 231 ~~~~~~~~iViDEah~----------~~~~~~~~~~----~~~i~~~~~~~~~~i~~----------------------- 273 (479)
T 3fmp_B 231 IDPKKIKVFVLDEADV----------MIATQGHQDQ----SIRIQRMLPRNCQMLLF----------------------- 273 (479)
T ss_dssp CCGGGCCEEEECCHHH----------HHTSTTHHHH----HHHHHTTSCTTSEEEEE-----------------------
T ss_pred cCcccCCEEEEECHHH----------HhhcCCcHHH----HHHHHhhCCccceEEEE-----------------------
Confidence 4445667778999987 665 688777 88888888888888898
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCC--cccEEEEEEECCh-hhHHHHHHHhhcC---CcEEEEecChHHHHHHH
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSS--VHLVKQYLIRTPK-SQKIVNLLSFLEG---KRSLIFVKTYRDASRII 1099 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~--~~~I~Q~~~~v~~-~~Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~ 1099 (1858)
|||+|..+.++++.++.+|..+.+.... ...+.|.++.++. ..|...|..++.. .++||||+|++.++.++
T Consensus 274 ---SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~ 350 (479)
T 3fmp_B 274 ---SATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLA 350 (479)
T ss_dssp ---ESCCCHHHHHHHHHHSSSEEEEEEC----------------------------------------------------
T ss_pred ---eCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHH
Confidence 9999999999999999999998886543 3347888877764 5677777776653 78999999999999999
Q ss_pred HHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCC------Chhhhhhhc
Q psy15269 1100 SAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPL------SINHYVFQI 1173 (1858)
Q Consensus 1100 ~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~------~~e~YIHRI 1173 (1858)
+.|.+.++.+..+||+|+ +.+|..++++|++|+.+|||||++++||||+|+|++|||||+|. +.++|+||+
T Consensus 351 ~~L~~~~~~v~~lh~~~~---~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~ 427 (479)
T 3fmp_B 351 AELSKEGHQVALLSGEMM---VEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 427 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhCCccEEEecCCCC---HHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHh
Confidence 999999999999999999 99999999999999999999999999999999999999999995 568999999
Q ss_pred --c---Cc-ceEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1174 --A---GH-KEAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1174 --a---g~-~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
+ |+ |.+++|+++.++..+++.|++.++.....++.
T Consensus 428 GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 468 (479)
T 3fmp_B 428 GRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 468 (479)
T ss_dssp -----------------------------------------
T ss_pred cccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCC
Confidence 2 22 37999999866789999999999887776653
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-23 Score=250.27 Aligned_cols=282 Identities=17% Similarity=0.143 Sum_probs=221.6
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~ 946 (1858)
..+.++-|+|+|+.|+-+.+..+....++.. ....|+.... ......++++.||.++++ ....
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~-----------~~~~~~~~~~----~~~~~~~iiv~T~~~l~~~~~~~~ 140 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKFTKITS-----------QLIVPDSFEK----NKQINAQVIVGTPGTVLDLMRRKL 140 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCE-----------EEESTTSSCT----TSCBCCSEEEECHHHHHHHHHTTC
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhcccCeeE-----------EEEecCchhh----hccCCCCEEEEcHHHHHHHHHcCC
Confidence 3568999999999999998877765554422 2333332211 112246788999999885 2333
Q ss_pred cccccccceeecccchhhhhhHHhhhhhh-cCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQ-TALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~-mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
........+++|||++ +.+ .+|... +..+...+++.+|.+++
T Consensus 141 ~~~~~~~~iIiDEah~----------~~~~~~~~~~----~~~~~~~~~~~~~~i~~----------------------- 183 (395)
T 3pey_A 141 MQLQKIKIFVLDEADN----------MLDQQGLGDQ----CIRVKRFLPKDTQLVLF----------------------- 183 (395)
T ss_dssp BCCTTCCEEEEETHHH----------HHHSTTHHHH----HHHHHHTSCTTCEEEEE-----------------------
T ss_pred cccccCCEEEEEChhh----------hcCccccHHH----HHHHHHhCCCCcEEEEE-----------------------
Confidence 3444556677888877 555 677666 77777777777777777
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCC--cccEEEEEEECC-hhhHHHHHHHhhc---CCcEEEEecChHHHHHHH
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSS--VHLVKQYLIRTP-KSQKIVNLLSFLE---GKRSLIFVKTYRDASRII 1099 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~--~~~I~Q~~~~v~-~~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~ 1099 (1858)
|||+++.+.++++.++.++..+.+.... ...+.+.+..+. ...|...+..++. ..++||||++++.++.++
T Consensus 184 ---SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 260 (395)
T 3pey_A 184 ---SATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLY 260 (395)
T ss_dssp ---ESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHH
T ss_pred ---EecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHH
Confidence 9999999999999999999888765433 334788887774 4566666666655 389999999999999999
Q ss_pred HHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCC------Chhhhhhhc
Q psy15269 1100 SAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPL------SINHYVFQI 1173 (1858)
Q Consensus 1100 ~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~------~~e~YIHRI 1173 (1858)
+.|++.++.+..+||+++ +.+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|. ++.+|+||+
T Consensus 261 ~~l~~~~~~~~~~~~~~~---~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~ 337 (395)
T 3pey_A 261 GKLKSEGHEVSILHGDLQ---TQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRI 337 (395)
T ss_dssp HHHHHTTCCCEEECTTSC---HHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHH
T ss_pred HHHHhcCCcEEEeCCCCC---HHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhc
Confidence 999999999999999999 99999999999999999999999999999999999999999999 999999999
Q ss_pred c-----Cc-ceEEEEecCcccHHHHHHHHHHHh-hcCCCCCC
Q psy15269 1174 A-----GH-KEAIAFYDPVADIGLASSLIKLLE-YSNKHVPT 1208 (1858)
Q Consensus 1174 a-----g~-~~aitfvt~~~e~~~l~~Ie~~l~-~~~q~ip~ 1208 (1858)
| |+ +.++.|+.+.++..+++.+++.++ .....+|.
T Consensus 338 GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 379 (395)
T 3pey_A 338 GRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPT 379 (395)
T ss_dssp TTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCS
T ss_pred cccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCCh
Confidence 2 22 389999998677888999998887 44445543
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-25 Score=264.41 Aligned_cols=285 Identities=18% Similarity=0.227 Sum_probs=100.9
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~ 946 (1858)
..+.++-|+|+|+.|+-+.+..+.....+ +...+.||.....+...+. ..++++.||.+++. ..+.
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~-----------~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~ 157 (394)
T 1fuu_A 90 PQALMLAPTRELALQIQKVVMALAFHMDI-----------KVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRR 157 (394)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCC-----------CEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTS
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccCCe-----------eEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCC
Confidence 35689999999999998888777665544 3355677766554444443 56789999999875 2222
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNS 1026 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~ 1026 (1858)
........+++|||++ +.+.+|... +..++..+++.++.+++
T Consensus 158 ~~~~~~~~vIiDEah~----------~~~~~~~~~----~~~~~~~~~~~~~~i~~------------------------ 199 (394)
T 1fuu_A 158 FRTDKIKMFILDEADE----------MLSSGFKEQ----IYQIFTLLPPTTQVVLL------------------------ 199 (394)
T ss_dssp SCCTTCCEEEEETHHH----------HHHTTCHHH----HHHHHHHSCTTCEEEEE------------------------
T ss_pred cchhhCcEEEEEChHH----------hhCCCcHHH----HHHHHHhCCCCceEEEE------------------------
Confidence 2233445677888877 777888888 88888888777777777
Q ss_pred CCCCCCcHhHHHHHHHhcCCCEEEEEccCCc--ccEEEEEEECChhh-HHHHHHHhhc---CCcEEEEecChHHHHHHHH
Q psy15269 1027 TDSLFSWGDIEEESNIEVEDPIMKLVKPSSV--HLVKQYLIRTPKSQ-KIVNLLSFLE---GKRSLIFVKTYRDASRIIS 1100 (1858)
Q Consensus 1027 ~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~--~~I~Q~~~~v~~~~-Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~ 1100 (1858)
|||+|..+.++...++.+|+.+.+..... ..+.+.+..++..+ |...+..+++ ..++||||++++.++.+++
T Consensus 200 --SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~ 277 (394)
T 1fuu_A 200 --SATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTT 277 (394)
T ss_dssp --CSSCCHHHHHHHHHHCCSCEEEEECC----------------------------------------------------
T ss_pred --EEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHH
Confidence 99999999999999999999988765433 23677777665544 6566655554 3789999999999999999
Q ss_pred HHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc---cC--
Q psy15269 1101 AVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI---AG-- 1175 (1858)
Q Consensus 1101 ~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI---ag-- 1175 (1858)
.|++.++.+..+||+++ +.+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|.++..|+||+ ++
T Consensus 278 ~L~~~~~~~~~~~~~~~---~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g 354 (394)
T 1fuu_A 278 KLRNDKFTVSAIYSDLP---QQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFG 354 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHcCCeEEEeeCCCC---HHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCC
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999 22
Q ss_pred -cceEEEEecCcccHHHHHHHHHHHhhcCCCCCCC
Q psy15269 1176 -HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTH 1209 (1858)
Q Consensus 1176 -~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~ 1209 (1858)
.+.++.|+++ +|...++.|+++++....++|..
T Consensus 355 ~~g~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~ 388 (394)
T 1fuu_A 355 RKGVAINFVTN-EDVGAMRELEKFYSTQIEELPSD 388 (394)
T ss_dssp -----------------------------------
T ss_pred CCceEEEEEch-hHHHHHHHHHHHhCCcccccCcc
Confidence 2379999998 78889999999998888877753
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-24 Score=276.05 Aligned_cols=282 Identities=9% Similarity=-0.012 Sum_probs=194.9
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccc-----ccCc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNI-----LMSP 944 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~l-----l~~~ 944 (1858)
.+.++.|+|+||.++...++.+.....+ +..+++||+. .+.+....+++++++||+++ .|..
T Consensus 126 ~vlVltptreLA~qd~e~~~~l~~~lgl-----------~v~~i~gg~~--~~~r~~~~~~dIv~gTpgrlgfD~L~D~m 192 (844)
T 1tf5_A 126 GVHVVTVNEYLASRDAEQMGKIFEFLGL-----------TVGLNLNSMS--KDEKREAYAADITYSTNNELGFDYLRDNM 192 (844)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHTTC-----------CEEECCTTSC--HHHHHHHHHSSEEEEEHHHHHHHHHHHTT
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHhhcCC-----------eEEEEeCCCC--HHHHHHhcCCCEEEECchhhhHHHHHHhh
Confidence 4789999999999999998888776666 4477899975 55566666899999999999 4433
Q ss_pred ----cccccccccceeecccchhhhhhHHhhhhh-hcCCCc-----------hhhHHHHHHHHHhH---------HHHHH
Q psy15269 945 ----NYESDVNKYSVLLKYIPQQYKNLVYSYLIQ-QTALSP-----------REKTVLEQIFSVVN---------KFRAE 999 (1858)
Q Consensus 945 ----~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~-~mGF~~-----------~~~esL~~Il~~Lp---------k~RQt 999 (1858)
+.........+|+||||+ |+ ++++.| .+-..+..|++.++ +.||+
T Consensus 193 ~~~~~~l~lr~~~~lVlDEaD~----------mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~ 262 (844)
T 1tf5_A 193 VLYKEQMVQRPLHFAVIDEVDS----------ILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAV 262 (844)
T ss_dssp CSSGGGCCCCCCCEEEEETHHH----------HHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCC
T ss_pred hcchhhhcccCCCEEEECchhh----------hhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceE
Confidence 233445667888999988 66 787543 12233888888876 35555
Q ss_pred HhhhccCCCCcccccccccccccccccCCCCCCcHhHHHH-----HHHhcC-C--CEE----------------------
Q psy15269 1000 LLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEE-----SNIEVE-D--PIM---------------------- 1049 (1858)
Q Consensus 1000 LLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~l-----a~~~L~-d--pv~---------------------- 1049 (1858)
+|.. .+...-.........+|||+|..+..+ |+.+++ | ++.
T Consensus 263 ~lt~---------~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~s 333 (844)
T 1tf5_A 263 QLTE---------EGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYS 333 (844)
T ss_dssp CBCH---------HHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCS
T ss_pred EecH---------HHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccc
Confidence 4110 000000000001124477766433332 333332 1 110
Q ss_pred ------------EEEccC----------------------------------------------Cccc--EE-EEEEECC
Q psy15269 1050 ------------KLVKPS----------------------------------------------SVHL--VK-QYLIRTP 1068 (1858)
Q Consensus 1050 ------------I~v~~~----------------------------------------------~~~~--I~-Q~~~~v~ 1068 (1858)
|.+..+ .... +. +.++.+.
T Consensus 334 dGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~ 413 (844)
T 1tf5_A 334 EGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRT 413 (844)
T ss_dssp TTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESS
T ss_pred hhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCCcccccCCcEEEeC
Confidence 000000 0000 11 2255677
Q ss_pred hhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc
Q psy15269 1069 KSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL 1143 (1858)
Q Consensus 1069 ~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD 1143 (1858)
..+|...|+..+. ..++||||+|++.++.|++.|++.|+++..|||++. |++|..+.++|+.| .|+||||
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~---~rEr~ii~~ag~~g--~VlIATd 488 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNH---EREAQIIEEAGQKG--AVTIATN 488 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCH---HHHHHHHTTTTSTT--CEEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCcc---HHHHHHHHHcCCCC--eEEEeCC
Confidence 8899998888764 367999999999999999999999999999999998 88888777777766 6999999
Q ss_pred ccccCCCCC--------CcceEEEcCCCCChhhhhhhc---cCc---ceEEEEecCccc
Q psy15269 1144 SDFIGNDFT--------NVEQVIIYNLPLSINHYVFQI---AGH---KEAIAFYDPVAD 1188 (1858)
Q Consensus 1144 VAARGLDIp--------~V~~VINyDlP~~~e~YIHRI---ag~---~~aitfvt~~~e 1188 (1858)
+|+||+||+ ++.||||||+|.+.+.|+||+ |+. |.+++|+++.++
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 999999999 888999999999999999999 222 289999998443
|
| >3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-23 Score=235.09 Aligned_cols=151 Identities=14% Similarity=0.220 Sum_probs=134.4
Q ss_pred eEecCCCceE-EEEecCCeEEEecCCCCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeeccc-cCCCCCCCcee
Q psy15269 1412 VSFDKEKCVC-CTVECGGQSLIHGPGTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR-DYNHRTTGDMW 1489 (1858)
Q Consensus 1412 f~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~~-~~~~~~~~~~W 1489 (1858)
+.|||+.++. +.+++|+++++. ..+++.++|+++|++|+||||++|.....+. ...||+|+.+.. +..+|++..||
T Consensus 13 v~ld~~d~~~~l~ls~d~l~v~~-~~~~~~vra~~~v~~G~~YfEV~v~~~~~~~-~~~iG~a~~~~~~~~~~G~d~~S~ 90 (213)
T 3toj_A 13 VLLALHDRAPQLKISDDRLTVVG-EKGYSMVRASHGVRKGAWYFEITVDEMPPDT-AARLGWSQPLGNLQAPLGYDKFSY 90 (213)
T ss_dssp CCEEEEEECTTSEECTTSSEEEC-CSSCEEEEESCCBSSEEEEEEEEEEECCTTC-EEEEEEECTTSCTTSCTTSSTTEE
T ss_pred EEechhhCCCCEEEcCCCcEEEe-CCceeEEEeCCCccCCeEEEEEEEeecCCCc-eEEEEeccCCcccccCCCCCCCcE
Confidence 7899999999 999999999987 6789999999999999999999998754322 389999999988 88999999999
Q ss_pred EEEeCCceeeeCCCCCccCCCcCCCCEEEEEEeccC--------ceEEEEeCCccccccccCCCCCCceeEEEEEeecCC
Q psy15269 1490 LYRAYSGNVYHSGEQTTMLPSFTQGDYITVVLDMDA--------QTLSFGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNA 1561 (1858)
Q Consensus 1490 ~y~~~~g~~~h~~~~~~~~~~~~~gd~i~v~lDm~~--------~tl~f~~ng~~~GvAF~~l~~~~~lyP~Vs~y~~~~ 1561 (1858)
+|++++|..||++....++++|.+||+|||.|||++ ++|+|++||+.+|+||+++..+ .||||||++.
T Consensus 91 gy~~~~G~~~h~~~~~~yg~~~~~GDvIGc~ld~~~~~~~~~~~g~i~Ft~NG~~lg~aF~~~~~~-~lyPavsl~~--- 166 (213)
T 3toj_A 91 SWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNGVNQGVAYKDIFEG-VYFPAISLYK--- 166 (213)
T ss_dssp EEETTTTCEEETTEEECCSCCCCTTCEEEEEEEECCC-----CCCEEEEEETTEEEEEEEESCCSS-CBEEEEEEES---
T ss_pred EEECCCCeEEeCCcCcccCCCCCCCCEEEEEEEcCCCccccCCccEEEEEeCCeeeeeeEEcCCCC-cEEEEEEcCC---
Confidence 999999999999877888999999999999999999 7999999999999999999766 5999999964
Q ss_pred CCCeEEEE
Q psy15269 1562 NGEKVKIT 1569 (1858)
Q Consensus 1562 ~~~~v~~~ 1569 (1858)
|..|++.
T Consensus 167 -~~~v~~N 173 (213)
T 3toj_A 167 -SCTVSIN 173 (213)
T ss_dssp -SCEEEEE
T ss_pred -CCEEEEE
Confidence 4455544
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-23 Score=254.83 Aligned_cols=270 Identities=15% Similarity=0.082 Sum_probs=207.4
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC---chhhhhhhhh-cccccccccccccCc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP---STAIIDIDKF-VRDMRHVSNNILMSP 944 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~---~~q~~dl~~~-v~~l~~t~~~ll~~~ 944 (1858)
..+.++-|+|+||.|+-..+..+.. ..+ +...+.||... ..+...+.++ .++++.||+++++..
T Consensus 65 ~~~lil~Pt~~L~~q~~~~~~~~~~-~~~-----------~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l 132 (414)
T 3oiy_A 65 KKSALVFPTVTLVKQTLERLQKLAD-EKV-----------KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNR 132 (414)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHCC-SSC-----------CEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCH
T ss_pred CEEEEEECCHHHHHHHHHHHHHHcc-CCc-----------eEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHH
Confidence 3468999999999999998887654 333 45678899887 4566666666 889999999998644
Q ss_pred cccccccccceeecccchhhhhhHH----hhhhhh-cCCCchhhHHHHHHHHHhH-----------HHHHHHhhhccCCC
Q psy15269 945 NYESDVNKYSVLLKYIPQQYKNLVY----SYLIQQ-TALSPREKTVLEQIFSVVN-----------KFRAELLSAVSNAP 1008 (1858)
Q Consensus 945 ~~~~~~~~~~~lLd~a~r~y~~~~~----A~lL~~-mGF~~~~~esL~~Il~~Lp-----------k~RQtLLf~~~~~~ 1008 (1858)
..........+|+|||.. +.. .+.|++ +||.++ .++.|++.++ ..+|.+++
T Consensus 133 ~~~~~~~~~~iViDEaH~----~~~~~~~~d~~l~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~~~~i~~------ 199 (414)
T 3oiy_A 133 EKLSQKRFDFVFVDDVDA----VLKASRNIDTLLMMVGIPEE---IIRKAFSTIKQGKIYERPKNLKPGILVVS------ 199 (414)
T ss_dssp HHHTTCCCSEEEESCHHH----HHHCHHHHHHHHHHTTCCHH---HHHHHHHHHHHTCCCCCCTTCCCCEEEES------
T ss_pred HHhccccccEEEEeChHh----hhhccchhhhHHhhcCCcHH---HHHHHHHhcccchhhhhcccCCCceEEEE------
Confidence 334444567788999965 211 156888 999877 3677788777 44555555
Q ss_pred CcccccccccccccccccCCCCC-CcHhHH-HHHHHhcCCCEEEEEc--cCCcccEEEEEEECChhhHHHHHHHhhcCCc
Q psy15269 1009 SFDDNNVSMGVTSTQHNSTDSLF-SWGDIE-EESNIEVEDPIMKLVK--PSSVHLVKQYLIRTPKSQKIVNLLSFLEGKR 1084 (1858)
Q Consensus 1009 s~~~~~~s~~~~~~~~~~~eSAT-~p~~I~-~la~~~L~dpv~I~v~--~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~~k 1084 (1858)
||| .|..+. .+.+.++. +.+. ......+.|.++.+++.+++..++... ..+
T Consensus 200 --------------------SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~~-~~~ 254 (414)
T 3oiy_A 200 --------------------SATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISSRSKEKLVELLEIF-RDG 254 (414)
T ss_dssp --------------------SCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEESSCCHHHHHHHHHHH-CSS
T ss_pred --------------------ecCCCcchhHHHHHHHhhc----cCcCccccccccchheeeccCHHHHHHHHHHHc-CCC
Confidence 999 676665 34444443 1121 223345889888887777766666553 489
Q ss_pred EEEEecChHHHHHHHHHHhhCCCeEE-EEecCCCCccHHHHHHHHHHHhcCCCcEEEe----ccccccCCCCCC-cceEE
Q psy15269 1085 SLIFVKTYRDASRIISAVQDSNMMTI-PMSNNGTSWSHVECLELLNLFNTGKSSLVIM----TLSDFIGNDFTN-VEQVI 1158 (1858)
Q Consensus 1085 ~IIFvnTk~~ad~L~~~L~~~g~~~~-~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVA----TDVAARGLDIp~-V~~VI 1158 (1858)
+||||+|++.++.+++.|++.|+.+. .+||+ +|. +++|++|+++|||| ||+++||+|+|+ |++||
T Consensus 255 ~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~-------~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI 325 (414)
T 3oiy_A 255 ILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-------EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVI 325 (414)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTCCEEESSSCH-------HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEE
T ss_pred EEEEECCHHHHHHHHHHHHHcCCceehhhcCc-------chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEE
Confidence 99999999999999999999999998 99984 333 99999999999999 999999999999 99999
Q ss_pred EcCCC--CChhhhhhhc---cC-------cceEEEEecCcccHHHHHHHHHHHh
Q psy15269 1159 IYNLP--LSINHYVFQI---AG-------HKEAIAFYDPVADIGLASSLIKLLE 1200 (1858)
Q Consensus 1159 NyDlP--~~~e~YIHRI---ag-------~~~aitfvt~~~e~~~l~~Ie~~l~ 1200 (1858)
|||+| .++++|+||+ |+ ++.+++|+ +|...++.|++.++
T Consensus 326 ~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~---~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 326 FWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESLKTRLL 376 (414)
T ss_dssp EESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC---CCHHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE---ccHHHHHHHHHHhc
Confidence 99999 9999999999 21 34788888 56788899999888
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=214.27 Aligned_cols=148 Identities=19% Similarity=0.323 Sum_probs=135.0
Q ss_pred CCcccEEEEEEECChhhHHHHHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHH
Q psy15269 1055 SSVHLVKQYLIRTPKSQKIVNLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLF 1131 (1858)
Q Consensus 1055 ~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~F 1131 (1858)
....+|+|+++.++..+|+..|.++++. .++||||+|++.++.+++.|++.|+.+..+||+|+ +.+|..++++|
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~---~~~r~~~~~~f 81 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMI---QEDRFDVMNEF 81 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSC---HHHHHHHHHHH
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCC---HHHHHHHHHHH
Confidence 3455699999999999999999988863 78999999999999999999999999999999999 99999999999
Q ss_pred hcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCCC
Q psy15269 1132 NTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKH 1205 (1858)
Q Consensus 1132 r~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ 1205 (1858)
++|+.+||||||+++||+|+|++++|||||+|.++++|+||+ .| .+.+++|+++ .|..+++.|++.++.+.++
T Consensus 82 ~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~i~~~~~~~~~~ 160 (163)
T 2hjv_A 82 KRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTA-FEKRFLADIEEYIGFEIQK 160 (163)
T ss_dssp HTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECG-GGHHHHHHHHHHHTSCCEE
T ss_pred HcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecH-HHHHHHHHHHHHHCCCcCc
Confidence 999999999999999999999999999999999999999999 22 2389999998 8999999999998876655
Q ss_pred C
Q psy15269 1206 V 1206 (1858)
Q Consensus 1206 i 1206 (1858)
+
T Consensus 161 ~ 161 (163)
T 2hjv_A 161 I 161 (163)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-22 Score=217.18 Aligned_cols=148 Identities=19% Similarity=0.294 Sum_probs=135.6
Q ss_pred ccEEEEEEECChhhHHHHHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC
Q psy15269 1058 HLVKQYLIRTPKSQKIVNLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG 1134 (1858)
Q Consensus 1058 ~~I~Q~~~~v~~~~Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G 1134 (1858)
.+|+|+|+.++..+|+..|.++++. .++||||++++.++.+++.|++.|+.+..+||+|+ +.+|..++++|++|
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~---~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMP---QEERLSRYQQFKDF 80 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSC---HHHHHHHHHHHHTT
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCC---HHHHHHHHHHHHCC
Confidence 4689999999999999999988863 78999999999999999999999999999999999 99999999999999
Q ss_pred CCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc------cCcceEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1135 KSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI------AGHKEAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1135 ~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI------ag~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
+.+||||||+++||+|+|++++|||||+|.++++|+||+ +..+.+++|+++.++...++.|++.++....++|.
T Consensus 81 ~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 81 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp SCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 999999999999999999999999999999999999999 22338999999856778999999999988887775
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-22 Score=260.77 Aligned_cols=283 Identities=10% Similarity=-0.010 Sum_probs=173.3
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccc-cc----Cc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNI-LM----SP 944 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~l-l~----~~ 944 (1858)
.+.++.|+|+||.|+...++.+.....+ +..+++||+. .+.+.+..+++++++||+++ +| ..
T Consensus 117 ~vlVltPTreLA~Q~~e~~~~l~~~lgl-----------~v~~i~GG~~--~~~r~~~~~~dIvvgTpgrl~fDyLrd~~ 183 (853)
T 2fsf_A 117 GVHVVTVNDYLAQRDAENNRPLFEFLGL-----------TVGINLPGMP--APAKREAYAADITYGTNNEYGFDYLRDNM 183 (853)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHHTTC-----------CEEECCTTCC--HHHHHHHHHSSEEEEEHHHHHHHHHHHTT
T ss_pred cEEEEcCCHHHHHHHHHHHHHHHHhcCC-----------eEEEEeCCCC--HHHHHHhcCCCEEEECCchhhHHHHHhhh
Confidence 4789999999999999998888777666 4577899976 56666667899999999998 33 22
Q ss_pred ----cccccccccceeecccchhhhhhHHhhhhh-hcC---------------CCchhhHHHHHHHHHhHH---------
Q psy15269 945 ----NYESDVNKYSVLLKYIPQQYKNLVYSYLIQ-QTA---------------LSPREKTVLEQIFSVVNK--------- 995 (1858)
Q Consensus 945 ----~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~-~mG---------------F~~~~~esL~~Il~~Lpk--------- 995 (1858)
+.........+|+||||+ |+ ++| |.++ +..|++.+++
T Consensus 184 ~~~~~~~~~~~l~~lVlDEaD~----------mLiD~a~tpLIiSg~~~~~~~~y~~----i~~iv~~L~~~~~~~~~~~ 249 (853)
T 2fsf_A 184 AFSPEERVQRKLHYALVDEVDS----------ILIDEARTPLIISGPAEDSSEMYKR----VNKIIPHLIRQEKEDSETF 249 (853)
T ss_dssp CSSGGGCCCCSCCEEEESCHHH----------HTTTTTTCEEEEEEC---------------------------------
T ss_pred hccHhHhcccCCcEEEECchHH----------HHHhcCcccccccCCCccchhHHHH----HHHHHHhchhhhccccccc
Confidence 224445677888999988 55 554 5566 8899998875
Q ss_pred -----------HHHHHhhhccCCCCcccccc-cccccccccccCCCCCCcHhHHHH-----HHHh---------------
Q psy15269 996 -----------FRAELLSAVSNAPSFDDNNV-SMGVTSTQHNSTDSLFSWGDIEEE-----SNIE--------------- 1043 (1858)
Q Consensus 996 -----------~RQtLLf~~~~~~s~~~~~~-s~~~~~~~~~~~eSAT~p~~I~~l-----a~~~--------------- 1043 (1858)
.||+++. +.+........ ..+. .......+|||+|+.+..+ |+.+
T Consensus 250 ~~~~dy~vdek~rqv~lt--e~g~~~~e~~l~~~~l-~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vv 326 (853)
T 2fsf_A 250 QGEGHFSVDEKSRQVNLT--ERGLVLIEELLVKEGI-MDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVI 326 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccceeccccceEEEc--HHHHHHHHHHHHhCCc-ccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEE
Confidence 5666543 11111000000 0000 0000124577765432222 1111
Q ss_pred ---------cC-------------CCEEEEEccCCcc--cEEE-------------------------------------
Q psy15269 1044 ---------VE-------------DPIMKLVKPSSVH--LVKQ------------------------------------- 1062 (1858)
Q Consensus 1044 ---------L~-------------dpv~I~v~~~~~~--~I~Q------------------------------------- 1062 (1858)
|. .+..|.+..++.+ .|.+
T Consensus 327 iVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPt 406 (853)
T 2fsf_A 327 IVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPT 406 (853)
T ss_dssp ------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCC
T ss_pred EEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCC
Confidence 11 1122333332222 1332
Q ss_pred ----------EEEECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHH
Q psy15269 1063 ----------YLIRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLEL 1127 (1858)
Q Consensus 1063 ----------~~~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~ 1127 (1858)
.++.++..+|...+++.+. ..++||||+|++.++.|++.|++.|+++..|||++. +++|..+
T Consensus 407 n~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~---~rEa~ii 483 (853)
T 2fsf_A 407 NRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFH---ANEAAIV 483 (853)
T ss_dssp SSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCH---HHHHHHH
T ss_pred CCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChh---HHHHHHH
Confidence 2456788899999888763 267999999999999999999999999999999998 9999888
Q ss_pred HHHHhcCCCcEEEeccccccCCCCCC--------------------------------c-----ceEEEcCCCCChhhhh
Q psy15269 1128 LNLFNTGKSSLVIMTLSDFIGNDFTN--------------------------------V-----EQVIIYNLPLSINHYV 1170 (1858)
Q Consensus 1128 L~~Fr~G~~~ILVATDVAARGLDIp~--------------------------------V-----~~VINyDlP~~~e~YI 1170 (1858)
.++|+.| .|+||||+|+||+||+. | .||||||+|.+.+.|+
T Consensus 484 a~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~ 561 (853)
T 2fsf_A 484 AQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDN 561 (853)
T ss_dssp HTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHH
T ss_pred HhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHH
Confidence 8999988 69999999999999997 4 6999999999999999
Q ss_pred hhc---cCcc---eEEEEecCcc
Q psy15269 1171 FQI---AGHK---EAIAFYDPVA 1187 (1858)
Q Consensus 1171 HRI---ag~~---~aitfvt~~~ 1187 (1858)
||+ |+.| .+++|++..+
T Consensus 562 qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 562 QLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhccccccCCCCeeEEEEecccH
Confidence 999 2222 8999999733
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-23 Score=278.18 Aligned_cols=237 Identities=14% Similarity=0.073 Sum_probs=184.8
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC---chhhhhhhhh-cccccccccccccCc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP---STAIIDIDKF-VRDMRHVSNNILMSP 944 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~---~~q~~dl~~~-v~~l~~t~~~ll~~~ 944 (1858)
..+.++.|+|+||.|+-..+..+. +.++ +...+.||... ..+...+.++ .++++.||+++++..
T Consensus 122 ~~~Lil~PtreLa~Q~~~~l~~l~-~~~i-----------~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l 189 (1104)
T 4ddu_A 122 KKSALVFPTVTLVKQTLERLQKLA-DEKV-----------KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNR 189 (1104)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTS-CTTS-----------CEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSH
T ss_pred CeEEEEechHHHHHHHHHHHHHhh-CCCC-----------eEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 346899999999999999998866 4443 45778999987 5566666666 889999999997643
Q ss_pred cccccccccceeecccchhhhhhHH----hhhhhh-cCCCchhhHHHHHHHHHhH-----------HHHHHHhhhccCCC
Q psy15269 945 NYESDVNKYSVLLKYIPQQYKNLVY----SYLIQQ-TALSPREKTVLEQIFSVVN-----------KFRAELLSAVSNAP 1008 (1858)
Q Consensus 945 ~~~~~~~~~~~lLd~a~r~y~~~~~----A~lL~~-mGF~~~~~esL~~Il~~Lp-----------k~RQtLLf~~~~~~ 1008 (1858)
..........+|+|||+. +.. .|.|++ +||.++ .++.|++.+| +.+|+++|
T Consensus 190 ~~l~~~~l~~lViDEaH~----l~~~~r~~Dr~L~~~gf~~~---~i~~il~~l~~~~~~~~~~~~~~~q~ll~------ 256 (1104)
T 4ddu_A 190 EKLSQKRFDFVFVDDVDA----VLKASRNIDTLLMMVGIPEE---IIRKAFSTIKQGKIYERPKNLKPGILVVS------ 256 (1104)
T ss_dssp HHHHTSCCSEEEESCHHH----HTTSSHHHHHHHHTSSCCHH---HHHHHHHHHHHTSCCCCCSSCCCCEEEEE------
T ss_pred HhhcccCcCEEEEeCCCc----cccccccchhhhHhcCCCHH---HHHHHHHhcccchhhhhhccCCCceEEEE------
Confidence 333344567788999954 221 156888 999887 4688888888 56677777
Q ss_pred CcccccccccccccccccCCCCC-CcHhHHH-HHHHhcCCCEEEEEc--cCCcccEEEEEEECChhhHHHHHHHhhcCCc
Q psy15269 1009 SFDDNNVSMGVTSTQHNSTDSLF-SWGDIEE-ESNIEVEDPIMKLVK--PSSVHLVKQYLIRTPKSQKIVNLLSFLEGKR 1084 (1858)
Q Consensus 1009 s~~~~~~s~~~~~~~~~~~eSAT-~p~~I~~-la~~~L~dpv~I~v~--~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~~k 1084 (1858)
||| .|..+++ +.+..+. +.+. .....++.|.++.+++..++..++..+ ..+
T Consensus 257 --------------------SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~~k~~~L~~ll~~~-~~~ 311 (1104)
T 4ddu_A 257 --------------------SATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISSRSKEKLVELLEIF-RDG 311 (1104)
T ss_dssp --------------------CBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESCCCHHHHHHHHHHH-CSS
T ss_pred --------------------cCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEecCHHHHHHHHHHhc-CCC
Confidence 999 7777663 3444433 2222 233445899998887666666555553 389
Q ss_pred EEEEecChHHHHHHHHHHhhCCCeEE-EEecCCCCccHHHHHHHHHHHhcCCCcEEEe----ccccccCCCCCC-cceEE
Q psy15269 1085 SLIFVKTYRDASRIISAVQDSNMMTI-PMSNNGTSWSHVECLELLNLFNTGKSSLVIM----TLSDFIGNDFTN-VEQVI 1158 (1858)
Q Consensus 1085 ~IIFvnTk~~ad~L~~~L~~~g~~~~-~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVA----TDVAARGLDIp~-V~~VI 1158 (1858)
+||||+|++.++.+++.|++.|+.+. .+||+ |.+ +++|++|+.+|||| ||+++||||||+ |++||
T Consensus 312 ~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~--------rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI 382 (1104)
T 4ddu_A 312 ILIFAQTEEEGKELYEYLKRFKFNVGETWSEF--------EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVI 382 (1104)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTCCEEESSSSH--------HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEE
T ss_pred EEEEECcHHHHHHHHHHHHhCCCCeeeEecCc--------HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEE
Confidence 99999999999999999999999998 99992 344 99999999999999 999999999999 99999
Q ss_pred EcCCCC
Q psy15269 1159 IYNLPL 1164 (1858)
Q Consensus 1159 NyDlP~ 1164 (1858)
|||+|.
T Consensus 383 ~~d~P~ 388 (1104)
T 4ddu_A 383 FWGTPS 388 (1104)
T ss_dssp EESCCE
T ss_pred EECCCC
Confidence 999999
|
| >3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-22 Score=227.57 Aligned_cols=145 Identities=22% Similarity=0.359 Sum_probs=123.7
Q ss_pred eeEecCCCceE-EEEecCCeEEEecC--CCCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeeccc------cCC
Q psy15269 1411 SVSFDKEKCVC-CTVECGGQSLIHGP--GTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR------DYN 1481 (1858)
Q Consensus 1411 ~f~~D~~~~~~-~~~~~~~~~~~~~~--~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~~------~~~ 1481 (1858)
.++|||++++. +++++|+.++++.. .++..+||+.+|++|.||||++|....++.. ..||||+..+. +..
T Consensus 43 ~~tlDp~ta~~~L~lSed~~~v~~~~~~~~~~~Vl~~~~~~sGrhYWEV~v~~~~~g~~-~~vGv~~~~~~r~~~g~~~~ 121 (217)
T 3emw_A 43 RHGWNPKDCSENIEVKEGGLYFERRPVAQSTDGARGKRGYSRGLHAWEISWPLEQRGTH-AVVGVATALAPLQTDHYAAL 121 (217)
T ss_dssp HTSEEEEEECTTEEEEGGGTEEEECCBSSCEEEEEESCCBSSSEEEEEEECCGGGCTTC-CEEEEECTTSCCEESSSCCC
T ss_pred ceEeCcccCCCCEEECCCCeEEEECccCCCCCEEEeCCCccCccEEEEEEEcccCCCCc-eeEEEEcCccccccCCcccc
Confidence 37899999999 99999999998853 2456899999999999999999886654443 88999998775 457
Q ss_pred CCCCCceeEEEeCCceeeeCCCC--CccC------CCcCCCCEEEEEEeccCceEEEEeCCccccccccCCCCCCceeEE
Q psy15269 1482 HRTTGDMWLYRAYSGNVYHSGEQ--TTML------PSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPI 1553 (1858)
Q Consensus 1482 ~~~~~~~W~y~~~~g~~~h~~~~--~~~~------~~~~~gd~i~v~lDm~~~tl~f~~ng~~~GvAF~~l~~~~~lyP~ 1553 (1858)
.|+++.+|+|+.++|..+|+++. ...+ |.|..||+|||.|||++|||+|++||+.+|+||+++.+ ++|||+
T Consensus 122 lG~~~~SW~l~~~~g~~~h~~~~~~~~~~~~~~~~~~~~~~d~IGV~LD~~~G~LsFy~ng~~lg~aF~~~~~-~~LyP~ 200 (217)
T 3emw_A 122 LGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEGTLGYAIGGTYLGPAFRGLKG-RTLYPA 200 (217)
T ss_dssp TTSSTTEEEEETTTCBEESSCCSSCCCBSSSSSTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECCCTT-CCBEEE
T ss_pred ccCCCCEEEEEeCCCcEEeCCcccCCccccccccccCCCCCCEEEEEEEcCCCEEEEEECCeEeEEEEECCCC-CEEEEE
Confidence 88999999999889999999874 2233 56899999999999999999999999999999999964 479999
Q ss_pred EEEe
Q psy15269 1554 VLFY 1557 (1858)
Q Consensus 1554 Vs~y 1557 (1858)
||++
T Consensus 201 ~sl~ 204 (217)
T 3emw_A 201 VSAV 204 (217)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9973
|
| >2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.8e-22 Score=216.06 Aligned_cols=144 Identities=21% Similarity=0.247 Sum_probs=124.7
Q ss_pred EEEEecCCeEEEecCCCCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeeccc-cCCCCCCCceeEEEeCCceee
Q psy15269 1421 CCTVECGGQSLIHGPGTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR-DYNHRTTGDMWLYRAYSGNVY 1499 (1858)
Q Consensus 1421 ~~~~~~~~~~~~~~~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~~-~~~~~~~~~~W~y~~~~g~~~ 1499 (1858)
.+.++++..++...+.+.+.++|++++++|+||||++|....++. .++||+++.+.. ++++|++..||+|+.++|..|
T Consensus 10 ~l~~~~d~l~~~~~~~~~~~vra~~p~~~g~~YfEv~i~~~~~~~-~~~IG~a~~~~~~~~~~G~d~~S~gy~~~dG~~~ 88 (171)
T 2yyo_A 10 HILVDGDTLSYHGNSGEVGCYVASRPLTKDSNYFEVSIVDSGVRG-TIAVGLVPQYYSLDHQPGWLPDSVAYHADDGKLY 88 (171)
T ss_dssp SEEEETTEEEECCCSSCCEEEECSSCCCSSSCEEEEEEEEETTTC-CCEEEEECTTCCTTSCTTSSTTCEEEETTTCCEE
T ss_pred eEEEcCCEEEEeCCCCceeEEEECCCCCCCCEEEEEEEEECCCCc-EEEEEecCCCCCCccCCCccCCEEEEEcCCCeEE
Confidence 377777766665555578999999999999999999999886433 499999999887 889999999999999999999
Q ss_pred eCCCC-CccCCCcCCCCEEEEEEeccC-----ceEEEEeCCccccccccCCCCCCceeEEEEEeecCCCCCeEEEE
Q psy15269 1500 HSGEQ-TTMLPSFTQGDYITVVLDMDA-----QTLSFGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNANGEKVKIT 1569 (1858)
Q Consensus 1500 h~~~~-~~~~~~~~~gd~i~v~lDm~~-----~tl~f~~ng~~~GvAF~~l~~~~~lyP~Vs~y~~~~~~~~v~~~ 1569 (1858)
|++.. ..++|+|.+||+|||.|||++ +||+|++||+.+|+||++++.+ .||||||++. + |++|++.
T Consensus 89 ~~~~~~~~yg~~f~~GDvIGc~id~~~~~~~~~~i~Ft~NG~~lg~af~~~~~~-~lyPaV~l~~--~-g~~v~vN 160 (171)
T 2yyo_A 89 NGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMPMSPD-GLFPAVGMHS--L-GEEVRLH 160 (171)
T ss_dssp SSSSCCBCCSCCCCTTCEEEEEECGGGGSSSCEEEEEEETTEEEEEEEESSCSS-SCEEEEEECS--T-TEEEEEE
T ss_pred eCCCCCCcCCCCCCCCCEEEEEEEeccCCCCcEEEEEEECCEEcCceecCCcCC-CEEEEEEEec--C-CCEEEEE
Confidence 98765 788899999999999999995 9999999999999999999755 5999999954 4 6677665
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.4e-22 Score=221.82 Aligned_cols=144 Identities=19% Similarity=0.274 Sum_probs=132.2
Q ss_pred EEEEEEECChhhHHHHHHHhhc---CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCC
Q psy15269 1060 VKQYLIRTPKSQKIVNLLSFLE---GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKS 1136 (1858)
Q Consensus 1060 I~Q~~~~v~~~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~ 1136 (1858)
+.+.++.++..+|+..|.++++ ..++||||+|++.++.+++.|++.|+.+..+||+|+ +.+|.+++++|++|+.
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~---~~~r~~~~~~f~~g~~ 82 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLS---QGERERVLGAFRQGEV 82 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSC---HHHHHHHHHHHHSSSC
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCC---HHHHHHHHHHHHCCCC
Confidence 5677888999999999988875 389999999999999999999999999999999999 9999999999999999
Q ss_pred cEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCCCCC
Q psy15269 1137 SLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207 (1858)
Q Consensus 1137 ~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip 1207 (1858)
+||||||+++||+|+|+|++|||||+|.+++.|+||+ +| .+.+++|+++ .+...++.|++.++...+.++
T Consensus 83 ~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~ 158 (212)
T 3eaq_A 83 RVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGP-RERRDVEALERAVGRRFKRVN 158 (212)
T ss_dssp CEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECG-GGHHHHHHHHHHHSSCCEECC
T ss_pred eEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEch-hHHHHHHHHHHHhcCcCeecC
Confidence 9999999999999999999999999999999999999 22 3389999998 899999999999998776655
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=211.31 Aligned_cols=149 Identities=19% Similarity=0.279 Sum_probs=135.4
Q ss_pred CcccEEEEEEECChhh-HHHHHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHH
Q psy15269 1056 SVHLVKQYLIRTPKSQ-KIVNLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLF 1131 (1858)
Q Consensus 1056 ~~~~I~Q~~~~v~~~~-Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~F 1131 (1858)
...+|+|+|+.++..+ |+..|..+++. .++||||+|++.++.+++.|++.|+.+..+||+|+ +.+|..++++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~---~~~R~~~~~~f 80 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELT---VEQRASIIQRF 80 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCC---HHHHHHHHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCC---HHHHHHHHHHH
Confidence 3456999999998765 99999998874 78999999999999999999999999999999999 99999999999
Q ss_pred hcCCCcEEEeccccccCCCCCCcceEEEcCCC------CChhhhhhhcc-----C-cceEEEEecCcccHHHHHHHHHHH
Q psy15269 1132 NTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLP------LSINHYVFQIA-----G-HKEAIAFYDPVADIGLASSLIKLL 1199 (1858)
Q Consensus 1132 r~G~~~ILVATDVAARGLDIp~V~~VINyDlP------~~~e~YIHRIa-----g-~~~aitfvt~~~e~~~l~~Ie~~l 1199 (1858)
++|+.+||||||+++||+|+|++++|||||+| .++++|+||+| | .+.+++|+++ .+...++.|++.+
T Consensus 81 ~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~i~~~~ 159 (175)
T 2rb4_A 81 RDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEV-DELPSLMKIQDHF 159 (175)
T ss_dssp HTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECG-GGHHHHHHHHHHH
T ss_pred HcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEcc-chHHHHHHHHHHh
Confidence 99999999999999999999999999999999 89999999992 2 2389999998 8889999999999
Q ss_pred hhcCCCCCC
Q psy15269 1200 EYSNKHVPT 1208 (1858)
Q Consensus 1200 ~~~~q~ip~ 1208 (1858)
+...++++.
T Consensus 160 ~~~~~~~~~ 168 (175)
T 2rb4_A 160 NSSIKQLNA 168 (175)
T ss_dssp TCCCEEECS
T ss_pred cCcccccCC
Confidence 887776664
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=210.03 Aligned_cols=148 Identities=22% Similarity=0.349 Sum_probs=134.6
Q ss_pred cEEEEEEECChhh-HHHHHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC
Q psy15269 1059 LVKQYLIRTPKSQ-KIVNLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG 1134 (1858)
Q Consensus 1059 ~I~Q~~~~v~~~~-Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G 1134 (1858)
+|+|+|+.++..+ |+..|.++++. .++||||+|++.++.+++.|++.|+.+..+||+|+ +.+|.+++++|++|
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~---~~~r~~~~~~f~~g 79 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLP---QQERDTIMKEFRSG 79 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSC---HHHHHHHHHHHHTT
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCC---HHHHHHHHHHHHcC
Confidence 5889999998777 98888888753 89999999999999999999999999999999999 99999999999999
Q ss_pred CCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhcc------CcceEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1135 KSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIA------GHKEAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1135 ~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIa------g~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
+.+||||||+++||+|+|++++|||||+|.++++|+||+| ..+.+++|+++ .+...++.+++.++...+++|.
T Consensus 80 ~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 158 (165)
T 1fuk_A 80 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTN-EDVGAMRELEKFYSTQIEELPS 158 (165)
T ss_dssp SCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEET-TTHHHHHHHHHHSSCCCEECCS
T ss_pred CCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcc-hHHHHHHHHHHHHccCccccCc
Confidence 9999999999999999999999999999999999999992 22389999998 8889999999999988888876
Q ss_pred Cc
Q psy15269 1209 HP 1210 (1858)
Q Consensus 1209 ~~ 1210 (1858)
..
T Consensus 159 ~~ 160 (165)
T 1fuk_A 159 DI 160 (165)
T ss_dssp CC
T ss_pred cH
Confidence 44
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-22 Score=232.12 Aligned_cols=269 Identities=14% Similarity=0.127 Sum_probs=206.9
Q ss_pred ceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccccc
Q psy15269 871 LWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYES 948 (1858)
Q Consensus 871 ~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~~ 948 (1858)
+.++-|+|+|+.++-+.+..+...... +...+.||.....+...+.. .++++.||.+++. ......
T Consensus 59 ~liv~P~~~L~~q~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~ 126 (337)
T 2z0m_A 59 SLVVTPTRELTRQVASHIRDIGRYMDT-----------KVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVID 126 (337)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCC-----------CEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCC
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhhcCC-----------cEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcc
Confidence 478999999999999888776655444 23456777765555555443 7789999999885 222223
Q ss_pred cccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCC
Q psy15269 949 DVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTD 1028 (1858)
Q Consensus 949 ~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~e 1028 (1858)
......+++|||++ +.+.||... +..++..++..++.+++
T Consensus 127 ~~~~~~iViDEah~----------~~~~~~~~~----~~~~~~~~~~~~~~~~~-------------------------- 166 (337)
T 2z0m_A 127 LSSFEIVIIDEADL----------MFEMGFIDD----IKIILAQTSNRKITGLF-------------------------- 166 (337)
T ss_dssp GGGCSEEEEESHHH----------HHHTTCHHH----HHHHHHHCTTCSEEEEE--------------------------
T ss_pred hhhCcEEEEEChHH----------hhccccHHH----HHHHHhhCCcccEEEEE--------------------------
Confidence 33445567888876 788888888 88888877766666666
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHH-HHHHhhcCCcEEEEecChHHHHHHHHHHhhCCC
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIV-NLLSFLEGKRSLIFVKTYRDASRIISAVQDSNM 1107 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~-~Ll~lL~~~k~IIFvnTk~~ad~L~~~L~~~g~ 1107 (1858)
|||+|..+.+....++.++..+... .....+.+.++.++...+.. ..+......++||||++++.++.+++.|+
T Consensus 167 SAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~---- 241 (337)
T 2z0m_A 167 SATIPEEIRKVVKDFITNYEEIEAC-IGLANVEHKFVHVKDDWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFD---- 241 (337)
T ss_dssp ESCCCHHHHHHHHHHSCSCEEEECS-GGGGGEEEEEEECSSSSHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT----
T ss_pred eCcCCHHHHHHHHHhcCCceeeecc-cccCCceEEEEEeChHHHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh----
Confidence 9999999999999999999887543 33445788887776543322 22222334889999999999999999887
Q ss_pred eEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhcc------CcceEEE
Q psy15269 1108 MTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIA------GHKEAIA 1181 (1858)
Q Consensus 1108 ~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIa------g~~~ait 1181 (1858)
.+..+||+++ +.+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|.++..|+||+| ..+.++.
T Consensus 242 ~~~~~~~~~~---~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~ 318 (337)
T 2z0m_A 242 NAIELRGDLP---QSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAIT 318 (337)
T ss_dssp TEEEECTTSC---HHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEE
T ss_pred hhhhhcCCCC---HHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEE
Confidence 5789999999 999999999999999999999999999999999999999999999999999992 2227889
Q ss_pred EecCcccHHHHHHHHHHHhh
Q psy15269 1182 FYDPVADIGLASSLIKLLEY 1201 (1858)
Q Consensus 1182 fvt~~~e~~~l~~Ie~~l~~ 1201 (1858)
|+. .|...++.|++.++.
T Consensus 319 ~~~--~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 319 FIL--NEYWLEKEVKKVSQK 336 (337)
T ss_dssp EES--SCHHHHHHHC-----
T ss_pred EEe--CcHHHHHHHHHHhcc
Confidence 988 677888888887754
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=215.29 Aligned_cols=150 Identities=27% Similarity=0.437 Sum_probs=124.4
Q ss_pred CCcccEEEEEEECChhhHHHHHHHhhcC----CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHH
Q psy15269 1055 SSVHLVKQYLIRTPKSQKIVNLLSFLEG----KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNL 1130 (1858)
Q Consensus 1055 ~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~----~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~ 1130 (1858)
....+|+|+|+.++..+|+..|+++++. .++||||+|++.++.+++.|+..|+.+..+||+|+ +.+|.+++++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~---~~~r~~~~~~ 91 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRS---QRDREEALHQ 91 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC-----------CHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCC---HHHHHHHHHH
Confidence 3455799999999999999999988853 68999999999999999999999999999999999 9999999999
Q ss_pred HhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCC
Q psy15269 1131 FNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNK 1204 (1858)
Q Consensus 1131 Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q 1204 (1858)
|++|+.+||||||+++||+|+|++++|||||+|+++++|+||+ .| .+.+++|+++ .+...++.+++.++...+
T Consensus 92 f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~ 170 (185)
T 2jgn_A 92 FRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQ 170 (185)
T ss_dssp HHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECG-GGGGGHHHHHHHHHHTTC
T ss_pred HHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEch-hhHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999 22 3389999998 888999999999999988
Q ss_pred CCCC
Q psy15269 1205 HVPT 1208 (1858)
Q Consensus 1205 ~ip~ 1208 (1858)
++|+
T Consensus 171 ~~~~ 174 (185)
T 2jgn_A 171 EVPS 174 (185)
T ss_dssp CCCH
T ss_pred CCCH
Confidence 8886
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=229.32 Aligned_cols=146 Identities=17% Similarity=0.264 Sum_probs=133.8
Q ss_pred cEEEEEEECChhhHHHHHHHhhc---CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCC
Q psy15269 1059 LVKQYLIRTPKSQKIVNLLSFLE---GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGK 1135 (1858)
Q Consensus 1059 ~I~Q~~~~v~~~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~ 1135 (1858)
.++|+++.++..+|+..|.++++ ..++||||+|++.++.+++.|++.|+.+..+||+|+ |.+|..++++|++|+
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~---~~~r~~~~~~f~~g~ 78 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMS---QGERERVMGAFRQGE 78 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCC---THHHHHHHHHHHHTS
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCC---HHHHHHHHHHhhcCC
Confidence 36899999999999999998876 389999999999999999999999999999999999 999999999999999
Q ss_pred CcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1136 SSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1136 ~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
.+||||||+++||||+|+|++|||||+|.+++.|+||+ +| .+.+++|+++ .+...++.|++.++.....++.
T Consensus 79 ~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~-~e~~~~~~ie~~~~~~~~~~~~ 156 (300)
T 3i32_A 79 VRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGP-RERRDVEALERAVGRRFKRVNP 156 (300)
T ss_dssp CCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECS-STHHHHHHHHHHHTCCCEECCC
T ss_pred ceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeCh-HHHHHHHHHHHHhCCcceEeCC
Confidence 99999999999999999999999999999999999999 22 2389999998 8999999999999987766553
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-21 Score=252.19 Aligned_cols=276 Identities=9% Similarity=-0.012 Sum_probs=192.8
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccc-c----cC-
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNI-L----MS- 943 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~l-l----~~- 943 (1858)
.+.++.|+|+||.++...++.+.....+ +..++.||+. .+.+......+++++||+++ + |.
T Consensus 154 ~v~VvTpTreLA~Qdae~m~~l~~~lGL-----------sv~~i~gg~~--~~~r~~~y~~DIvygTpgrlgfDyLrD~m 220 (922)
T 1nkt_A 154 GVHIVTVNDYLAKRDSEWMGRVHRFLGL-----------QVGVILATMT--PDERRVAYNADITYGTNNEFGFDYLRDNM 220 (922)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHTTC-----------CEEECCTTCC--HHHHHHHHHSSEEEEEHHHHHHHHHHHTT
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCC-----------eEEEEeCCCC--HHHHHHhcCCCEEEECchHhhHHHHHhhh
Confidence 4789999999999999998888777666 4477899976 55566666889999999998 3 33
Q ss_pred ---ccccccccccceeecccchhhhhhHHhhhhh-h---------------cCCCchhhHHHHHHHHHhH---------H
Q psy15269 944 ---PNYESDVNKYSVLLKYIPQQYKNLVYSYLIQ-Q---------------TALSPREKTVLEQIFSVVN---------K 995 (1858)
Q Consensus 944 ---~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~-~---------------mGF~~~~~esL~~Il~~Lp---------k 995 (1858)
.+.........+|+||||+ |+ + |||.++ +..|++.++ +
T Consensus 221 ~~~~~~l~lr~l~~lIVDEaDs----------mLiDeartPLiiSg~~~~~~~~y~~----i~~iv~~L~~~~dy~vDek 286 (922)
T 1nkt_A 221 AHSLDDLVQRGHHYAIVDEVDS----------ILIDEARTPLIISGPADGASNWYTE----FARLAPLMEKDVHYEVDLR 286 (922)
T ss_dssp CSSGGGCCCCCCCEEEETTHHH----------HHTTGGGSCEEEEEECCCCHHHHHH----HHHHHHHSCBTTTEEEETT
T ss_pred hccHhhhccCCCCEEEEeChHH----------HHHhcCccceeecCCCCcchhHHHH----HHHHHHhCcccccceeccC
Confidence 2234445567788999988 55 4 456667 999999997 6
Q ss_pred HHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHH-----HHHhcC-C-------CEEEEEc---------
Q psy15269 996 FRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEE-----SNIEVE-D-------PIMKLVK--------- 1053 (1858)
Q Consensus 996 ~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~l-----a~~~L~-d-------pv~I~v~--------- 1053 (1858)
.||++|.. .+...-.........+|||+|+.+..+ |..+++ | +..+.|.
T Consensus 287 ~rqv~Lte---------~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~g 357 (922)
T 1nkt_A 287 KRTVGVHE---------KGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIG 357 (922)
T ss_dssp TTEEEECH---------HHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTT
T ss_pred cceEEecH---------hHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCC
Confidence 67776210 000000000000113366655322221 222221 1 1111111
Q ss_pred ------------------------------------------------------------------cCCccc--EE-EEE
Q psy15269 1054 ------------------------------------------------------------------PSSVHL--VK-QYL 1064 (1858)
Q Consensus 1054 ------------------------------------------------------------------~~~~~~--I~-Q~~ 1064 (1858)
+..... +. +.+
T Consensus 358 rr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~ 437 (922)
T 1nkt_A 358 RRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDL 437 (922)
T ss_dssp CCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCE
T ss_pred ccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcE
Confidence 000011 11 124
Q ss_pred EECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEE
Q psy15269 1065 IRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLV 1139 (1858)
Q Consensus 1065 ~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~IL 1139 (1858)
+.+...+|...++..+. +.++||||+|++.++.|++.|++.|+++..|||++. +++|..+.+.|+.| .|+
T Consensus 438 v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~---~rEa~iia~agr~G--~Vt 512 (922)
T 1nkt_A 438 IYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH---EQEATIIAVAGRRG--GVT 512 (922)
T ss_dssp EESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH---HHHHHHHHTTTSTT--CEE
T ss_pred EEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChh---HHHHHHHHhcCCCC--eEE
Confidence 56778889998888763 257999999999999999999999999999999987 88888888889888 699
Q ss_pred EeccccccCCCCCCc----------------------------------------------------ceEEEcCCCCChh
Q psy15269 1140 IMTLSDFIGNDFTNV----------------------------------------------------EQVIIYNLPLSIN 1167 (1858)
Q Consensus 1140 VATDVAARGLDIp~V----------------------------------------------------~~VINyDlP~~~e 1167 (1858)
||||+|+||+||+.+ .||||||+|.+.+
T Consensus 513 IATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~r 592 (922)
T 1nkt_A 513 VATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRR 592 (922)
T ss_dssp EEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHH
T ss_pred EecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHH
Confidence 999999999999975 5999999999999
Q ss_pred hhhhhc---cCcc---eEEEEecCc
Q psy15269 1168 HYVFQI---AGHK---EAIAFYDPV 1186 (1858)
Q Consensus 1168 ~YIHRI---ag~~---~aitfvt~~ 1186 (1858)
.|+||+ |+.| .+++|++..
T Consensus 593 iy~qr~GRTGRqGdpG~s~fflSle 617 (922)
T 1nkt_A 593 IDNQLRGRSGRQGDPGESRFYLSLG 617 (922)
T ss_dssp HHHHHHHTSSGGGCCEEEEEEEETT
T ss_pred HHHHHhcccccCCCCeeEEEEechh
Confidence 999999 3333 899999973
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=242.67 Aligned_cols=267 Identities=13% Similarity=0.090 Sum_probs=194.9
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhh------hhcccccccccccccC
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDID------KFVRDMRHVSNNILMS 943 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~------~~v~~l~~t~~~ll~~ 943 (1858)
.+.++.|.|+|+.+.-+.+..+ | ++...+.|+.....+...+. ...++++.||.++...
T Consensus 86 ~~lVisP~~~L~~q~~~~l~~~--g-------------i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~ 150 (591)
T 2v1x_A 86 FTLVICPLISLMEDQLMVLKQL--G-------------ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKS 150 (591)
T ss_dssp EEEEECSCHHHHHHHHHHHHHH--T-------------CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSC
T ss_pred cEEEEeCHHHHHHHHHHHHHhc--C-------------CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhcc
Confidence 3588999999999887766554 1 23455666665433322221 2466889999877532
Q ss_pred c-------cccccccccceeecccchhhhhhHHhhhhhhcC--CCchhhHHHHH--HHHHhHHHHHHHhhhccCCCCccc
Q psy15269 944 P-------NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTA--LSPREKTVLEQ--IFSVVNKFRAELLSAVSNAPSFDD 1012 (1858)
Q Consensus 944 ~-------~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mG--F~~~~~esL~~--Il~~Lpk~RQtLLf~~~~~~s~~~ 1012 (1858)
. ..........+++|||+. +.+.| |.++ +.. ++......++.+++
T Consensus 151 ~~~~~~l~~~~~~~~i~~iViDEAH~----------is~~g~dfr~~----~~~l~~l~~~~~~~~ii~l---------- 206 (591)
T 2v1x_A 151 KMFMSRLEKAYEARRFTRIAVDEVHC----------CSQWGHDFRPD----YKALGILKRQFPNASLIGL---------- 206 (591)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETGGG----------GSTTCTTCCGG----GGGGGHHHHHCTTSEEEEE----------
T ss_pred HHHHHHHHhhhhccCCcEEEEECccc----------ccccccccHHH----HHHHHHHHHhCCCCcEEEE----------
Confidence 1 111223445577888877 88888 8888 433 22222223344555
Q ss_pred ccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEE-ccCCcccEEEEEEECC--hhhHHHHHHHhhcC----CcE
Q psy15269 1013 NNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLV-KPSSVHLVKQYLIRTP--KSQKIVNLLSFLEG----KRS 1085 (1858)
Q Consensus 1013 ~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v-~~~~~~~I~Q~~~~v~--~~~Kl~~Ll~lL~~----~k~ 1085 (1858)
|||+++.+.+.+..++..+..+.+ ......++...+...+ ..+++..|++++.. .++
T Consensus 207 ----------------SAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~ 270 (591)
T 2v1x_A 207 ----------------TATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSG 270 (591)
T ss_dssp ----------------ESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEE
T ss_pred ----------------ecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCe
Confidence 999999999888888865433322 2233445655554443 35677888888753 789
Q ss_pred EEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCC
Q psy15269 1086 LIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLS 1165 (1858)
Q Consensus 1086 IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~ 1165 (1858)
||||+|++.++.+++.|++.|+.+..+||+|+ +.+|.+++++|++|+.+|||||+++++|||+|+|++|||||+|.+
T Consensus 271 IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~---~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s 347 (591)
T 2v1x_A 271 IIYCFSQKDSEQVTVSLQNLGIHAGAYHANLE---PEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKS 347 (591)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCEEEECTTSC---HHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSS
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCEEEecCCCC---HHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCC
Confidence 99999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcc---C---cceEEEEecCcccHHHHHHH
Q psy15269 1166 INHYVFQIA---G---HKEAIAFYDPVADIGLASSL 1195 (1858)
Q Consensus 1166 ~e~YIHRIa---g---~~~aitfvt~~~e~~~l~~I 1195 (1858)
++.|+||+| + .+.++.|+++ .|...++.+
T Consensus 348 ~~~y~Qr~GRaGR~G~~g~~i~l~~~-~D~~~~~~~ 382 (591)
T 2v1x_A 348 MENYYQESGRAGRDDMKADCILYYGF-GDIFRISSM 382 (591)
T ss_dssp HHHHHHHHTTSCTTSSCEEEEEEECH-HHHHHHHHH
T ss_pred HHHHHHHhccCCcCCCCceEEEEECh-HHHHHHHHH
Confidence 999999992 2 2279999998 665544443
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-21 Score=263.04 Aligned_cols=266 Identities=11% Similarity=0.080 Sum_probs=197.4
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchh---hhhhhhhcccccccccccccCccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTA---IIDIDKFVRDMRHVSNNILMSPNY 946 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q---~~dl~~~v~~l~~t~~~ll~~~~~ 946 (1858)
.++++-|+|+||.|+-..+..+.....+.. -.+...+.||.....+ ...+.+ .++++.||+++++....
T Consensus 101 ~~lil~PtreLa~Q~~~~l~~l~~~~~i~~-------~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~ 172 (1054)
T 1gku_B 101 RCYVIFPTSLLVIQAAETIRKYAEKAGVGT-------ENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE 172 (1054)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHTTTCCSG-------GGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhcCCCc-------cceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH
Confidence 468999999999999999888776654421 1245678899887774 334445 88999999999974433
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhH-----------HHHHHHhhhccCCCCcccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVN-----------KFRAELLSAVSNAPSFDDNNV 1015 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lp-----------k~RQtLLf~~~~~~s~~~~~~ 1015 (1858)
......+|+|||++ |.+ |.++ ++.|+..+. +.+|++++
T Consensus 173 --L~~l~~lViDEah~----------~l~--~~~~----~~~i~~~lgf~~~~~~~~~~~~~q~~l~------------- 221 (1054)
T 1gku_B 173 --LGHFDFIFVDDVDA----------ILK--ASKN----VDKLLHLLGFHYDLKTKSWVGEARGCLM------------- 221 (1054)
T ss_dssp --SCCCSEEEESCHHH----------HHT--STHH----HHHHHHHTTEEEETTTTEEEECCSSEEE-------------
T ss_pred --hccCCEEEEeChhh----------hhh--cccc----HHHHHHHhCcchhhhhhhcccCCceEEE-------------
Confidence 34566778999988 665 4445 666666542 33444454
Q ss_pred cccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCC--cccEEEEEEECChhhHHHHHHHhhcC--CcEEEEecC
Q psy15269 1016 SMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSS--VHLVKQYLIRTPKSQKIVNLLSFLEG--KRSLIFVKT 1091 (1858)
Q Consensus 1016 s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~--~~~I~Q~~~~v~~~~Kl~~Ll~lL~~--~k~IIFvnT 1091 (1858)
|||.+.. +++++.++.++..+.+.... ...+.|.++. .+|...|..+++. .++||||+|
T Consensus 222 -------------SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~---~~k~~~L~~ll~~~~~~~LVF~~t 284 (1054)
T 1gku_B 222 -------------VSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVN---DESISTLSSILEKLGTGGIIYART 284 (1054)
T ss_dssp -------------ECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEES---CCCTTTTHHHHTTSCSCEEEEESS
T ss_pred -------------EecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEec---hhHHHHHHHHHhhcCCCEEEEEcC
Confidence 8888877 66666666666555554332 3347887774 3444445555543 789999999
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEe----ccccccCCCCCCc-ceEEEcCCC---
Q psy15269 1092 YRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIM----TLSDFIGNDFTNV-EQVIIYNLP--- 1163 (1858)
Q Consensus 1092 k~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVA----TDVAARGLDIp~V-~~VINyDlP--- 1163 (1858)
++.|+.+++.|++. +++..+||++. +++++|++|+.+|||| ||+++||||+|+| ++|||||+|
T Consensus 285 ~~~a~~l~~~L~~~-~~v~~lhg~~~--------~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~ 355 (1054)
T 1gku_B 285 GEEAEEIYESLKNK-FRIGIVTATKK--------GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFR 355 (1054)
T ss_dssp HHHHHHHHHTTTTS-SCEEECTTSSS--------HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEE
T ss_pred HHHHHHHHHHHhhc-cCeeEEeccHH--------HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCccc
Confidence 99999999999988 99999999984 6788999999999999 9999999999996 999999999
Q ss_pred --------------------------------------------------------------------CChhhhhhhcc-
Q psy15269 1164 --------------------------------------------------------------------LSINHYVFQIA- 1174 (1858)
Q Consensus 1164 --------------------------------------------------------------------~~~e~YIHRIa- 1174 (1858)
.+.++|+||+|
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GR 435 (1054)
T 1gku_B 356 VTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGR 435 (1054)
T ss_dssp EECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHT
T ss_pred ccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhch
Confidence 78999999992
Q ss_pred -Cc---c---eEEEEecCcccHHHHHHHHHHHhh
Q psy15269 1175 -GH---K---EAIAFYDPVADIGLASSLIKLLEY 1201 (1858)
Q Consensus 1175 -g~---~---~aitfvt~~~e~~~l~~Ie~~l~~ 1201 (1858)
|+ + .+++|+.. +|...++.|++.++.
T Consensus 436 agR~g~~g~~~g~~~~~~-~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 436 TSRLFAGGLTKGASFLLE-DDSELLSAFIERAKL 468 (1054)
T ss_dssp TCCEETTEECCEEEEEEC-SCHHHHHHHHHHHHT
T ss_pred hhhccCCCCceEEEEEEe-cCHHHHHHHHHHHhh
Confidence 22 2 38999988 788999999999986
|
| >2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7.3e-20 Score=206.04 Aligned_cols=159 Identities=21% Similarity=0.289 Sum_probs=126.9
Q ss_pred eeEecCCCceE-EEEecCCe-EEEec--CCCCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeeccc------cC
Q psy15269 1411 SVSFDKEKCVC-CTVECGGQ-SLIHG--PGTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR------DY 1480 (1858)
Q Consensus 1411 ~f~~D~~~~~~-~~~~~~~~-~~~~~--~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~~------~~ 1480 (1858)
.++|||++++. +++++|+. ++... ..++..+||+++|++|.||||++|.....+.+ ..||||+..+. ..
T Consensus 32 ~~tldp~ta~~~L~lsed~~~~~~~~~~~~~~~~Vlg~~~f~sGrhYWEV~v~~~~~~~~-w~vGV~~~~~~r~~~g~~~ 110 (212)
T 2jk9_A 32 LHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQRGTH-AVVGVATADAPLHSVGYTT 110 (212)
T ss_dssp HTSEEEEEECTTEEEETTEEEEEEECCBTTEEEEEEESCCBCSSEEEEEEECCGGGCTTC-CEEEEECTTSCCEEESSCC
T ss_pred ccccChhhcCCceEEeCCCeEEEEECCCCCccceEEcCCCccCCeEEEEEEEecccCCCc-EEEEEEcCCccccccCccc
Confidence 36999999998 99998875 45432 23456799999999999999999875443444 67999998876 24
Q ss_pred CCCCCCceeEEEeCCceeeeCCCCCc---------cCCCcCCCCEEEEEEeccCceEEEEeCCccccccccCCCCCCcee
Q psy15269 1481 NHRTTGDMWLYRAYSGNVYHSGEQTT---------MLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLY 1551 (1858)
Q Consensus 1481 ~~~~~~~~W~y~~~~g~~~h~~~~~~---------~~~~~~~gd~i~v~lDm~~~tl~f~~ng~~~GvAF~~l~~~~~ly 1551 (1858)
..|.+..+|+|+.++|.++|++.... +.+.|.+||+|||.||+++|+|+|++||+++|+||+++. +++||
T Consensus 111 ~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~IGv~LD~e~G~lsFy~ng~~l~~aF~~~~-~~~l~ 189 (212)
T 2jk9_A 111 LVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGLK-GKKLY 189 (212)
T ss_dssp CTTSSTTEEEEETTTTEEEESTTTSCCEESSTTSCTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECCCT-TCCBE
T ss_pred ccccCCCcEeeECCCCcEEECCcccCccccCcccccCCcCCCCCEEEEEEECCCCEEEEEECCEEeEEEeccCC-CCEEe
Confidence 56889999999998999999887521 345678999999999999999999999999999999996 45799
Q ss_pred EEEEEeecCCCCCeEEEEEeeec
Q psy15269 1552 PIVLFYSTNANGEKVKITDMTVC 1574 (1858)
Q Consensus 1552 P~Vs~y~~~~~~~~v~~~~~~~~ 1574 (1858)
|+|+++. . +..|+|+-+-.+
T Consensus 190 P~f~l~~--g-~~~v~l~~~~~~ 209 (212)
T 2jk9_A 190 PVVSAVW--G-HCEIRMRYLNGL 209 (212)
T ss_dssp EEEEECC--T-TCEEEEEEEEEE
T ss_pred eEEEEEc--C-CcEEEEEECCCc
Confidence 9999831 1 335777766655
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-21 Score=253.93 Aligned_cols=335 Identities=11% Similarity=0.055 Sum_probs=184.1
Q ss_pred cccccCccHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccc
Q psy15269 833 IHRSMYPTLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSL 912 (1858)
Q Consensus 833 ~~~~~~~~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~ 912 (1858)
+...-+. +-.++|++..+.+... .....+.++-|+|+|+.|.-..+..++....+ +...
T Consensus 36 ~TGsGKT-l~~~~~i~~~l~~~~~---------~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~-----------~v~~ 94 (696)
T 2ykg_A 36 PTGCGKT-FVSLLICEHHLKKFPQ---------GQKGKVVFFANQIPVYEQNKSVFSKYFERHGY-----------RVTG 94 (696)
T ss_dssp CTTSSHH-HHHHHHHHHHHHHSCT---------TCCCCEEEECSSHHHHHHHHHHHHHHTTTTTC-----------CEEE
T ss_pred CCCchHH-HHHHHHHHHHHHhCcc---------CCCCeEEEEECCHHHHHHHHHHHHHHhccCCc-----------eEEE
Confidence 4334442 3456677776654321 11234689999999999998888777754433 4466
Q ss_pred cccccCCchhhhhhhhhcccccccccccccC--cccc-ccccccceeecccchhhhhhHHhhh---hhhcCC--------
Q psy15269 913 LSAGLEPSTAIIDIDKFVRDMRHVSNNILMS--PNYE-SDVNKYSVLLKYIPQQYKNLVYSYL---IQQTAL-------- 978 (1858)
Q Consensus 913 ~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~--~~~~-~~~~~~~~lLd~a~r~y~~~~~A~l---L~~mGF-------- 978 (1858)
+.||.....+...+....++++.||+++++. .+.. .......+|+|||++--..-.+... +++++|
T Consensus 95 ~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~ 174 (696)
T 2ykg_A 95 ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP 174 (696)
T ss_dssp ECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCC
T ss_pred EeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcccCCCCC
Confidence 7899887777777777889999999999862 2222 3455677889999982222222222 222222
Q ss_pred -------------CchhhHHHHHHHHHhHHHHHHHhhhccCCCCcc-------cccccccccccccccCCCCCCc---Hh
Q psy15269 979 -------------SPREKTVLEQIFSVVNKFRAELLSAVSNAPSFD-------DNNVSMGVTSTQHNSTDSLFSW---GD 1035 (1858)
Q Consensus 979 -------------~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~-------~~~~s~~~~~~~~~~~eSAT~p---~~ 1035 (1858)
..+..+.++.|++.++...-.... ... .... ................+++|++ ..
T Consensus 175 ~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~-~~~-~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~ 252 (696)
T 2ykg_A 175 QVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIA-TVK-HNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRD 252 (696)
T ss_dssp EEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEE-CCC-TTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHH
T ss_pred eEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEe-ecc-cchHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHH
Confidence 111123455555554321100000 000 0000 0000000001223334566777 67
Q ss_pred HHHHHHHhcCCCEEEEEcc-------------------------------------------------------------
Q psy15269 1036 IEEESNIEVEDPIMKLVKP------------------------------------------------------------- 1054 (1858)
Q Consensus 1036 I~~la~~~L~dpv~I~v~~------------------------------------------------------------- 1054 (1858)
++++++.++++|..+....
T Consensus 253 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~ 332 (696)
T 2ykg_A 253 TESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMK 332 (696)
T ss_dssp HHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHH
Confidence 8888888888754331100
Q ss_pred ---------------CCcccEEEEEEEC----------------ChhhHHHHHHHhhc-------CCcEEEEecChHHHH
Q psy15269 1055 ---------------SSVHLVKQYLIRT----------------PKSQKIVNLLSFLE-------GKRSLIFVKTYRDAS 1096 (1858)
Q Consensus 1055 ---------------~~~~~I~Q~~~~v----------------~~~~Kl~~Ll~lL~-------~~k~IIFvnTk~~ad 1096 (1858)
.....+.|.+... ....|+..|.+++. ..++||||++++.++
T Consensus 333 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~ 412 (696)
T 2ykg_A 333 DALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 412 (696)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHH
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHH
Confidence 0001111111100 13456777766653 378999999999999
Q ss_pred HHHHHHhhCC----CeEEEEe--------cCCCCccHHHHHHHHHHHhc-CCCcEEEeccccccCCCCCCcceEEEcCCC
Q psy15269 1097 RIISAVQDSN----MMTIPMS--------NNGTSWSHVECLELLNLFNT-GKSSLVIMTLSDFIGNDFTNVEQVIIYNLP 1163 (1858)
Q Consensus 1097 ~L~~~L~~~g----~~~~~LH--------G~ms~~~Q~eR~~~L~~Fr~-G~~~ILVATDVAARGLDIp~V~~VINyDlP 1163 (1858)
.+++.|++.| +++..+| |+|+ +.+|.+++++|++ |+.+|||||++++||||+|+|++|||||+|
T Consensus 413 ~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~---~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p 489 (696)
T 2ykg_A 413 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT---LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 489 (696)
T ss_dssp HHHHHHHHCTTCCSCCEEC--------------------------------CCSCSEEEESSCCC---CCCSEEEEESCC
T ss_pred HHHHHHHhCCCccccceeEEEccCCCccccCCC---HHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCC
Confidence 9999999988 8999995 5898 9999999999998 999999999999999999999999999999
Q ss_pred CChhhhhhhccCcc-----eEEEEecCcccHHHHHHH
Q psy15269 1164 LSINHYVFQIAGHK-----EAIAFYDPVADIGLASSL 1195 (1858)
Q Consensus 1164 ~~~e~YIHRIag~~-----~aitfvt~~~e~~~l~~I 1195 (1858)
.++++|+||+|+ + .++.+++. .+......+
T Consensus 490 ~s~~~~~Qr~GR-GR~~~g~~~~l~~~-~~~~~~~~~ 524 (696)
T 2ykg_A 490 GNVIKMIQTRGR-GRARGSKCFLLTSN-AGVIEKEQI 524 (696)
T ss_dssp --CCCC----------CCCEEEEEESC-HHHHHHHHH
T ss_pred CCHHHHHHhhcc-CcCCCceEEEEecC-CCHHHHHHH
Confidence 999999999955 3 57777776 555444444
|
| >2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-20 Score=212.84 Aligned_cols=162 Identities=22% Similarity=0.317 Sum_probs=129.8
Q ss_pred eeEecCCCceE-EEEecCCeEEEecC--CCCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeeccc------cCC
Q psy15269 1411 SVSFDKEKCVC-CTVECGGQSLIHGP--GTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR------DYN 1481 (1858)
Q Consensus 1411 ~f~~D~~~~~~-~~~~~~~~~~~~~~--~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~~------~~~ 1481 (1858)
.++|||++++. +++++|+.+++... .++..+||+++|++|.||||+++....++.+ ..||||+..+. ...
T Consensus 40 ~~tLDp~ta~~~L~lSed~~~v~~~~~~~~~~~Vlg~~~f~sGrhYWEV~V~~~~~~~~-w~vGV~~~s~~~~r~~~~~~ 118 (226)
T 2afj_A 40 HHGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTH-AVVGVATALAPLQADHYAAL 118 (226)
T ss_dssp HHSSCCSSSCCSSEEETTTTEEECSSCTTTSSSEEECCCCCCSEEEEEEECCCCSSSCC-CEEEEEESSCCCSSCSSSCC
T ss_pred ccEEccccCCCCEEEeCCCEEEEECCCCCCcCeEEECCCccCCEEEEEEEEeccCCCCC-EEEEecCCcccccccccccc
Confidence 46899999998 89999999888432 1234899999999999999999876543333 78999998883 345
Q ss_pred CCCCCceeEEEeCCceeeeCCCCC--ccC------CCcCCCCEEEEEEeccCceEEEEeCCccccccccCCCCCCceeEE
Q psy15269 1482 HRTTGDMWLYRAYSGNVYHSGEQT--TML------PSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPI 1553 (1858)
Q Consensus 1482 ~~~~~~~W~y~~~~g~~~h~~~~~--~~~------~~~~~gd~i~v~lDm~~~tl~f~~ng~~~GvAF~~l~~~~~lyP~ 1553 (1858)
.|.+..+|+|..++|.++|+++.. ..+ +.+.+||+|||.||+++|+|+|++||+++|+||+++. +++|||+
T Consensus 119 ~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~rIGV~LD~e~G~lSFy~ng~~l~~aF~~~~-~~~L~P~ 197 (226)
T 2afj_A 119 LGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRGLK-GRTLYPS 197 (226)
T ss_dssp CCCSCEEEEEEGGGTSTTSSSSCCSCSSSSCCSGGGGSCCSSCEEEEEETTTTEEEEESTTCSCSTTHHHHH-HHCCEEE
T ss_pred ccCCCCcEEEEcCCCeEEECccccCcccccccccCCcCCCCCEEEEEEECCCCEEEEEECCeEeEEEEEcCC-CCEEEEE
Confidence 688999999998888888998752 223 3578999999999999999999999999999999985 4469999
Q ss_pred EEEeecCCCCCeEEEEEeeeccCC
Q psy15269 1554 VLFYSTNANGEKVKITDMTVCETP 1577 (1858)
Q Consensus 1554 Vs~y~~~~~~~~v~~~~~~~~~~p 1577 (1858)
|+++. . +..|.|+.+..+.++
T Consensus 198 f~l~~--g-~~~v~l~~~~g~~~~ 218 (226)
T 2afj_A 198 VSAVW--G-QCQVRIRYMGERRVE 218 (226)
T ss_dssp EEECC--T-TSCCEEEEESCCCCS
T ss_pred EEccc--C-CCEEEEEEcCCCChh
Confidence 99832 2 336888887777443
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=229.74 Aligned_cols=263 Identities=14% Similarity=0.189 Sum_probs=185.5
Q ss_pred ceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhh---hhhh-hcccccccccccccCcc-
Q psy15269 871 LWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAII---DIDK-FVRDMRHVSNNILMSPN- 945 (1858)
Q Consensus 871 ~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~---dl~~-~v~~l~~t~~~ll~~~~- 945 (1858)
+.++.|.|+|+.+.-+.+..+ | ++...+.|+.....+.. ++.. ..++++.||.+++...-
T Consensus 68 ~lvi~P~~aL~~q~~~~l~~~--g-------------i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~ 132 (523)
T 1oyw_A 68 TVVVSPLISLMKDQVDQLQAN--G-------------VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL 132 (523)
T ss_dssp EEEECSCHHHHHHHHHHHHHT--T-------------CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH
T ss_pred EEEECChHHHHHHHHHHHHHc--C-------------CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH
Confidence 478899999999887766543 1 22334445544332222 2222 26788999999874221
Q ss_pred -ccccccccceeecccchhhhhhHHhhhhhhcC--CCchhhHHHHHHH---HHhHHHHHHHhhhccCCCCcccccccccc
Q psy15269 946 -YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTA--LSPREKTVLEQIF---SVVNKFRAELLSAVSNAPSFDDNNVSMGV 1019 (1858)
Q Consensus 946 -~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mG--F~~~~~esL~~Il---~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~ 1019 (1858)
.........+++|||+. +.+.| |.++ ...|. +..| ..+.+.+
T Consensus 133 ~~l~~~~~~~vViDEaH~----------i~~~g~~fr~~----~~~l~~l~~~~~-~~~~i~l----------------- 180 (523)
T 1oyw_A 133 EHLAHWNPVLLAVDEAHC----------ISQWGHDFRPE----YAALGQLRQRFP-TLPFMAL----------------- 180 (523)
T ss_dssp HHHTTSCEEEEEESSGGG----------GCTTSSCCCHH----HHGGGGHHHHCT-TSCEEEE-----------------
T ss_pred HHHhhCCCCEEEEeCccc----------cCcCCCccHHH----HHHHHHHHHhCC-CCCEEEE-----------------
Confidence 11123445677888877 77877 6666 33321 1111 1223344
Q ss_pred cccccccCCCCCCcHhHHH-HHHHh-cCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhc---CCcEEEEecChHH
Q psy15269 1020 TSTQHNSTDSLFSWGDIEE-ESNIE-VEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLE---GKRSLIFVKTYRD 1094 (1858)
Q Consensus 1020 ~~~~~~~~eSAT~p~~I~~-la~~~-L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~---~~k~IIFvnTk~~ 1094 (1858)
|||.+..+.+ +.+.+ +.+|..+ +......++...+ .++.++...+++++. ..++||||+|++.
T Consensus 181 ---------SAT~~~~~~~~i~~~l~~~~~~~~-~~~~~r~~l~~~v--~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~ 248 (523)
T 1oyw_A 181 ---------TATADDTTRQDIVRLLGLNDPLIQ-ISSFDRPNIRYML--MEKFKPLDQLMRYVQEQRGKSGIIYCNSRAK 248 (523)
T ss_dssp ---------ESCCCHHHHHHHHHHHTCCSCEEE-ECCCCCTTEEEEE--EECSSHHHHHHHHHHHTTTCCEEEECSSHHH
T ss_pred ---------eCCCCHHHHHHHHHHhCCCCCeEE-eCCCCCCceEEEE--EeCCCHHHHHHHHHHhcCCCcEEEEeCCHHH
Confidence 8999988765 44333 4566543 3334444554333 344567777777775 3789999999999
Q ss_pred HHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-
Q psy15269 1095 ASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI- 1173 (1858)
Q Consensus 1095 ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI- 1173 (1858)
++.+++.|++.|+.+..+||+|+ +.+|.+++++|++|+.+|||||+++++|||+|+|++|||||+|.+++.|+||+
T Consensus 249 ~e~l~~~L~~~g~~~~~~h~~l~---~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~G 325 (523)
T 1oyw_A 249 VEDTAARLQSKGISAAAYHAGLE---NNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETG 325 (523)
T ss_dssp HHHHHHHHHHTTCCEEEECTTSC---HHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCEEEecCCCC---HHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhc
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred -cC----cceEEEEecCcccHHHHHHHH
Q psy15269 1174 -AG----HKEAIAFYDPVADIGLASSLI 1196 (1858)
Q Consensus 1174 -ag----~~~aitfvt~~~e~~~l~~Ie 1196 (1858)
+| .+.++.|+++ .|...++.+.
T Consensus 326 RaGR~g~~~~~~l~~~~-~d~~~~~~~~ 352 (523)
T 1oyw_A 326 RAGRDGLPAEAMLFYDP-ADMAWLRRCL 352 (523)
T ss_dssp TSCTTSSCEEEEEEECH-HHHHHHHHHH
T ss_pred cccCCCCCceEEEEeCH-HHHHHHHHHH
Confidence 22 2279999998 6665554443
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-20 Score=240.97 Aligned_cols=245 Identities=11% Similarity=0.051 Sum_probs=177.7
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCccc---
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPNY--- 946 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~~--- 946 (1858)
.++++.|+|+||.|+.+.+.+.. + +.+...+ ..+.||+++++....
T Consensus 217 ~vLvl~PtreLa~Qi~~~l~~~~----v----------------------~~~~~~l-----~~~~tp~~~i~~~t~~~l 265 (618)
T 2whx_A 217 RTLILAPTRVVAAEMEEALRGLP----I----------------------RYQTPAV-----KSDHTGREIVDLMCHATF 265 (618)
T ss_dssp CEEEEESSHHHHHHHHHHTTTSC----E----------------------EECCTTS-----SCCCCSSSCEEEEEHHHH
T ss_pred eEEEEcChHHHHHHHHHHhcCCc----e----------------------eEecccc-----eeccCCCceEEEEChHHH
Confidence 35889999999999998876321 0 0010001 125677777742111
Q ss_pred -------cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhH-HHHHHHhhhccCCCCccccccccc
Q psy15269 947 -------ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVN-KFRAELLSAVSNAPSFDDNNVSMG 1018 (1858)
Q Consensus 947 -------~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lp-k~RQtLLf~~~~~~s~~~~~~s~~ 1018 (1858)
........+|+|||++ | +++|... +..|.+.++ +.+|++++
T Consensus 266 ~~~l~~~~~l~~~~~iViDEah~----------~-~~~~~~~----~~~i~~~l~~~~~q~il~---------------- 314 (618)
T 2whx_A 266 TTRLLSSTRVPNYNLIVMDEAHF----------T-DPCSVAA----RGYISTRVEMGEAAAIFM---------------- 314 (618)
T ss_dssp HHHHHHCSSCCCCSEEEEESTTC----------C-SHHHHHH----HHHHHHHHHHTSCEEEEE----------------
T ss_pred HHHHhccccccCCeEEEEECCCC----------C-CccHHHH----HHHHHHHhcccCccEEEE----------------
Confidence 1134556677999988 5 6777777 888888886 46788888
Q ss_pred ccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECCh-hhHHHHHHHhhcCCcEEEEecChHHHHH
Q psy15269 1019 VTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPK-SQKIVNLLSFLEGKRSLIFVKTYRDASR 1097 (1858)
Q Consensus 1019 ~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~-~~Kl~~Ll~lL~~~k~IIFvnTk~~ad~ 1097 (1858)
|||+|..+.++++ .+|..+.+...... .+ ...+..+.+ ...++||||+|++.|+.
T Consensus 315 ----------SAT~~~~~~~~~~---~~~~~~~v~~~~~~---------~~~~~ll~~l~~--~~~~~LVF~~s~~~a~~ 370 (618)
T 2whx_A 315 ----------TATPPGSTDPFPQ---SNSPIEDIEREIPE---------RSWNTGFDWITD--YQGKTVWFVPSIKAGND 370 (618)
T ss_dssp ----------CSSCTTCCCSSCC---CSSCEEEEECCCCS---------SCCSSSCHHHHH--CCSCEEEECSSHHHHHH
T ss_pred ----------ECCCchhhhhhhc---cCCceeeecccCCH---------HHHHHHHHHHHh--CCCCEEEEECChhHHHH
Confidence 9999988765443 35555544322100 01 111122222 24789999999999999
Q ss_pred HHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceE--------------------
Q psy15269 1098 IISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQV-------------------- 1157 (1858)
Q Consensus 1098 L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~V-------------------- 1157 (1858)
+++.|++.|+++..+||+ +|.+++++|++|+.+||||||+++|||||+ |++|
T Consensus 371 l~~~L~~~g~~v~~lhg~-------~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~ 442 (618)
T 2whx_A 371 IANCLRKSGKRVIQLSRK-------TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVI 442 (618)
T ss_dssp HHHHHHHTTCCEEEECTT-------THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEE
T ss_pred HHHHHHHcCCcEEEEChH-------HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceE
Confidence 999999999999999984 366799999999999999999999999997 9998
Q ss_pred EEcCCCCChhhhhhhc-----cC--cceEEEEec---CcccHHHHHHHHHHHhhcCCCCCCC
Q psy15269 1158 IIYNLPLSINHYVFQI-----AG--HKEAIAFYD---PVADIGLASSLIKLLEYSNKHVPTH 1209 (1858)
Q Consensus 1158 INyDlP~~~e~YIHRI-----ag--~~~aitfvt---~~~e~~~l~~Ie~~l~~~~q~ip~~ 1209 (1858)
||||+|.+.++|+||+ +| .+.+++|++ + +|...++.|++.+......+++.
T Consensus 443 i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~-~d~~~l~~le~~i~l~~~~~~~~ 503 (618)
T 2whx_A 443 LAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLK-NDEDHAHWTEAKMLLDNIYTPEG 503 (618)
T ss_dssp EEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCC-CCTTCHHHHHHHHHHTTCCCTTC
T ss_pred EcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCch-hhHHHHHHHHhHhccccccCCcc
Confidence 8899999999999999 22 337899998 5 78888999999887766666543
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-19 Score=228.73 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=81.3
Q ss_pred hhHHHHHHHhhc-------CCcEEEEecChHHHHHHHHHHhhCC------------CeEEEEecCCCCccHHHHHHHHHH
Q psy15269 1070 SQKIVNLLSFLE-------GKRSLIFVKTYRDASRIISAVQDSN------------MMTIPMSNNGTSWSHVECLELLNL 1130 (1858)
Q Consensus 1070 ~~Kl~~Ll~lL~-------~~k~IIFvnTk~~ad~L~~~L~~~g------------~~~~~LHG~ms~~~Q~eR~~~L~~ 1130 (1858)
..|+..|.+++. ..++||||++++.++.+++.|++.+ .....+||+|+ +.+|.+++++
T Consensus 370 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~R~~~~~~ 446 (555)
T 3tbk_A 370 NPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMT---LPAQKCVLEA 446 (555)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccC---HHHHHHHHHH
Confidence 346666666663 2899999999999999999999864 34455566998 9999999999
Q ss_pred Hhc-CCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccC--cc--eEEEEecCcccHHHHHHH
Q psy15269 1131 FNT-GKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAG--HK--EAIAFYDPVADIGLASSL 1195 (1858)
Q Consensus 1131 Fr~-G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag--~~--~aitfvt~~~e~~~l~~I 1195 (1858)
|++ |+++||||||+++||||+|+|++|||||+|+++..|+||+|+ .. .++.|+++ .+......+
T Consensus 447 F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GRgR~~~g~~~~l~~~-~~~~~~~~~ 515 (555)
T 3tbk_A 447 FRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGRGRARDSKCFLLTSS-ADVIEKEKA 515 (555)
T ss_dssp -----CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCCCTTTSCEEEEEESC-HHHHHHHHH
T ss_pred HhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCcCcCCCceEEEEEcC-CCHHHHHHH
Confidence 999 999999999999999999999999999999999999999943 22 79999987 554444444
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.8e-21 Score=206.84 Aligned_cols=143 Identities=19% Similarity=0.311 Sum_probs=130.5
Q ss_pred cEEEEEEECCh-hhHHHHHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC
Q psy15269 1059 LVKQYLIRTPK-SQKIVNLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG 1134 (1858)
Q Consensus 1059 ~I~Q~~~~v~~-~~Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G 1134 (1858)
+|+|+|+.++. .+|+..|.++++. .++||||+|++.++.+++.|++.|+.+..+||+|+ +.+|..++++|++|
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~---~~~r~~~~~~f~~g 79 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMV---QGKRNEAIKRLTEG 79 (170)
Confidence 57899999988 8899999888875 68999999999999999999999999999999999 99999999999999
Q ss_pred CCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhcc-----C-cceEEEEecCcccHHHHHHHHHHHhhcCCC
Q psy15269 1135 KSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIA-----G-HKEAIAFYDPVADIGLASSLIKLLEYSNKH 1205 (1858)
Q Consensus 1135 ~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIa-----g-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ 1205 (1858)
+.+||||||+++||+|+|++++|||||+|.++++|+||+| | .+.+++|+++ .+...++.+++.++...++
T Consensus 80 ~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 155 (170)
T 2yjt_D 80 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEA-HDHLLLGKVGRYIEEPIKA 155 (170)
Confidence 9999999999999999999999999999999999999992 2 2378999998 7888999999988776554
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-19 Score=228.49 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=62.3
Q ss_pred hhHHHHHHHhhc-------CCcEEEEecChHHHHHHHHHHhhC------------CCeEEEEecCCCCccHHHHHHHHHH
Q psy15269 1070 SQKIVNLLSFLE-------GKRSLIFVKTYRDASRIISAVQDS------------NMMTIPMSNNGTSWSHVECLELLNL 1130 (1858)
Q Consensus 1070 ~~Kl~~Ll~lL~-------~~k~IIFvnTk~~ad~L~~~L~~~------------g~~~~~LHG~ms~~~Q~eR~~~L~~ 1130 (1858)
..|+..|.+++. ..++||||++++.++.+++.|++. |.....+||+|+ +.+|.+++++
T Consensus 371 ~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~R~~~~~~ 447 (556)
T 4a2p_A 371 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMT---LPSQKGVLDA 447 (556)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------------
T ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccC---HHHHHHHHHH
Confidence 446666666663 279999999999999999999876 566667788898 9999999999
Q ss_pred Hhc-CCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccC--c--ceEEEEecC
Q psy15269 1131 FNT-GKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAG--H--KEAIAFYDP 1185 (1858)
Q Consensus 1131 Fr~-G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag--~--~~aitfvt~ 1185 (1858)
|++ |+++||||||+++||||+|+|++|||||+|+++..|+||+|+ . +.++.|+++
T Consensus 448 F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GRgR~~~g~~~~l~~~ 507 (556)
T 4a2p_A 448 FKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSK 507 (556)
T ss_dssp ------CCEEEEEC-----------CEEEEETCCSCHHHHHHC--------CCEEEEESC
T ss_pred hcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCCCCCCCceEEEEEeC
Confidence 999 999999999999999999999999999999999999999954 2 268899987
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-19 Score=242.21 Aligned_cols=270 Identities=10% Similarity=-0.001 Sum_probs=199.1
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.++.|+|+||.|+-+.+..+.. +-.++.|+.... ...++++.||+++++ ..+..
T Consensus 229 rvlvl~PtraLa~Q~~~~l~~~~~---------------~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~ 286 (1108)
T 3l9o_A 229 RVIYTSPIKALSNQKYRELLAEFG---------------DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSE 286 (1108)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTS---------------SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSS
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhC---------------CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCcc
Confidence 468999999999999888766443 234567776543 346789999999885 22223
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccC
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNST 1027 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~ 1027 (1858)
.......+|+|||++ |.+++|... ++.|+..+++.+|.+++
T Consensus 287 ~l~~l~lVVIDEaH~----------l~d~~rg~~----~e~ii~~l~~~~qvl~l------------------------- 327 (1108)
T 3l9o_A 287 VMREVAWVIFDEVHY----------MRDKERGVV----WEETIILLPDKVRYVFL------------------------- 327 (1108)
T ss_dssp HHHHEEEEEEETGGG----------TTSHHHHHH----HHHHHHHSCTTSEEEEE-------------------------
T ss_pred ccccCCEEEEhhhhh----------ccccchHHH----HHHHHHhcCCCceEEEE-------------------------
Confidence 344566778899888 888888777 99999999988888888
Q ss_pred CCCCCcHh--HHHHHHHhcCCCEEEEEccCCcccEEEEEEECCh------------------------------------
Q psy15269 1028 DSLFSWGD--IEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPK------------------------------------ 1069 (1858)
Q Consensus 1028 eSAT~p~~--I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~------------------------------------ 1069 (1858)
|||+|.. +.+.......+|+.+.........++++++....
T Consensus 328 -SATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 406 (1108)
T 3l9o_A 328 -SATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNST 406 (1108)
T ss_dssp -ECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------
T ss_pred -cCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhccccccc
Confidence 9998865 5577777888888887765555556666543210
Q ss_pred -------------------hhHHHHHHHhhc---CCcEEEEecChHHHHHHHHHHhhCCCe-------------------
Q psy15269 1070 -------------------SQKIVNLLSFLE---GKRSLIFVKTYRDASRIISAVQDSNMM------------------- 1108 (1858)
Q Consensus 1070 -------------------~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~~~g~~------------------- 1108 (1858)
..++..++..+. ..++||||++++.|+.++..|...++.
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l 486 (1108)
T 3l9o_A 407 DSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALL 486 (1108)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc
Confidence 233444444443 268999999999999999999764443
Q ss_pred --------------------EEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCCh--
Q psy15269 1109 --------------------TIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSI-- 1166 (1858)
Q Consensus 1109 --------------------~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~-- 1166 (1858)
+..+||+|+ +.+|..+++.|++|+++|||||++++||||+|++++||||+.|.+.
T Consensus 487 ~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~---~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~ 563 (1108)
T 3l9o_A 487 PETDRELPQIKHILPLLRRGIGIHHSGLL---PILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQ 563 (1108)
T ss_dssp HHHTTCCHHHHHHTHHHHHTEEEECSCSC---HHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSC
T ss_pred chhhhhhhhHHHHHHhhhcCeeeecCCCC---HHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccc
Confidence 788999999 9999999999999999999999999999999999999999886655
Q ss_pred ------hhhhhhc---c--C---cceEEEEecCcccHHHHHHHHHHHhhcCCCCC
Q psy15269 1167 ------NHYVFQI---A--G---HKEAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207 (1858)
Q Consensus 1167 ------e~YIHRI---a--g---~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip 1207 (1858)
.+|+||+ | | .+.++.++.+..+.. .+.+++.....++.
T Consensus 564 ~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~---~~~~l~~~~~~~L~ 615 (1108)
T 3l9o_A 564 FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQ---VAKGMVKGQADRLD 615 (1108)
T ss_dssp EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHH---HHHHHHHCCCCCCC
T ss_pred cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHH---HHHHHhcCCCcccc
Confidence 4599999 2 2 336777777643433 34455555444443
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-18 Score=219.28 Aligned_cols=127 Identities=13% Similarity=0.128 Sum_probs=108.6
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYN 1161 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyD 1161 (1858)
+.++||||+|++.++.+++.|++.|+++..+||+++ +.+|.+++++|++|+++||||||+++||+|+|+|++|||||
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~---~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d 521 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIK---TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILD 521 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCC---HHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCC---HHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeC
Confidence 379999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred C-----CCChhhhhhhcc-----CcceEEEEecCcccHHHH---------HHHHHHHhhcCCCCCCCccc
Q psy15269 1162 L-----PLSINHYVFQIA-----GHKEAIAFYDPVADIGLA---------SSLIKLLEYSNKHVPTHPHA 1212 (1858)
Q Consensus 1162 l-----P~~~e~YIHRIa-----g~~~aitfvt~~~e~~~l---------~~Ie~~l~~~~q~ip~~~~~ 1212 (1858)
. |.+.++|+||+| +.|.+++|+++ .+..+. +.+++.++......|....+
T Consensus 522 ~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~-~~~~~~~~i~~~~~~r~i~~~~~~~~~~~p~~~~~ 590 (661)
T 2d7d_A 522 ADKEGFLRSERSLIQTIGRAARNAEGRVIMYADK-ITKSMEIAINETKRRREQQERFNEEHGITPKTINK 590 (661)
T ss_dssp TTCCTTTTSHHHHHHHHHTTTTSTTCEEEEECSS-CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC
T ss_pred cccccCCCCHHHHHHHhCcccCCCCCEEEEEEeC-CCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhh
Confidence 8 999999999992 22389999987 444333 34555566665566644433
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-18 Score=226.52 Aligned_cols=101 Identities=24% Similarity=0.233 Sum_probs=89.1
Q ss_pred CCcEEEEecChHHHHHHHHHHhhC------CCeEEEEecC--------CCCccHHHHHHHHHHHhcCCCcEEEecccccc
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDS------NMMTIPMSNN--------GTSWSHVECLELLNLFNTGKSSLVIMTLSDFI 1147 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~------g~~~~~LHG~--------ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAAR 1147 (1858)
..++||||++++.++.+++.|++. |+.+..+||+ |+ +.+|.+++++|++|+++|||||++++|
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~---~~eR~~~~~~F~~g~~~VLVaT~~~~~ 476 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMT---QNEQKEVISKFRTGKINLLIATTVAEE 476 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCC---HHHHHHHHHHHCC---CCSEEECSCCT
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCC---HHHHHHHHHHHhcCCCcEEEEcccccc
Confidence 579999999999999999999987 9999999999 98 999999999999999999999999999
Q ss_pred CCCCCCcceEEEcCCCCChhhhhhhc--cCcc-eEEEEecC
Q psy15269 1148 GNDFTNVEQVIIYNLPLSINHYVFQI--AGHK-EAIAFYDP 1185 (1858)
Q Consensus 1148 GLDIp~V~~VINyDlP~~~e~YIHRI--ag~~-~aitfvt~ 1185 (1858)
|||+|+|++|||||+|++++.|+||+ ||++ .++.|+.+
T Consensus 477 GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g~~~~l~~~ 517 (699)
T 4gl2_A 477 GLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAH 517 (699)
T ss_dssp TSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSSCEEEEEEE
T ss_pred CCccccCCEEEEeCCCCCHHHHHHHcCCCCCCCceEEEEEe
Confidence 99999999999999999999999999 4444 77777765
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-19 Score=230.79 Aligned_cols=247 Identities=13% Similarity=0.073 Sum_probs=169.1
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCcccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPNYESD 949 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~~~~~ 949 (1858)
.+.++.|+|+||.++.+.+..... . +.....||.. +....++++.||++++... ....
T Consensus 259 ~vLVl~PTReLA~Qia~~l~~~~g-~-------------~vg~~vG~~~-------~~~~~~IlV~TPGrLl~~~-~l~l 316 (666)
T 3o8b_A 259 KVLVLNPSVAATLGFGAYMSKAHG-I-------------DPNIRTGVRT-------ITTGAPVTYSTYGKFLADG-GCSG 316 (666)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHS-C-------------CCEEECSSCE-------ECCCCSEEEEEHHHHHHTT-SCCT
T ss_pred eEEEEcchHHHHHHHHHHHHHHhC-C-------------CeeEEECcEe-------ccCCCCEEEECcHHHHhCC-Cccc
Confidence 358999999999999775443221 1 1122344422 3456788999999987543 2334
Q ss_pred ccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCCC
Q psy15269 950 VNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDS 1029 (1858)
Q Consensus 950 ~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eS 1029 (1858)
.+...+|+||| + +++++|..+ +..|++.+++.|+++++ ..|
T Consensus 317 ~~l~~lVlDEA-H----------~l~~~~~~~----l~~Il~~l~~~~~~lli------------------------l~S 357 (666)
T 3o8b_A 317 GAYDIIICDEC-H----------STDSTTILG----IGTVLDQAETAGARLVV------------------------LAT 357 (666)
T ss_dssp TSCSEEEETTT-T----------CCSHHHHHH----HHHHHHHTTTTTCSEEE------------------------EEE
T ss_pred CcccEEEEccc-h----------hcCccHHHH----HHHHHHhhhhcCCceEE------------------------EEC
Confidence 45667889999 6 667788777 99999999988886433 018
Q ss_pred CCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhcCCcEEEEecChHHHHHHHHHHhhCCCeE
Q psy15269 1030 LFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEGKRSLIFVKTYRDASRIISAVQDSNMMT 1109 (1858)
Q Consensus 1030 AT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~~k~IIFvnTk~~ad~L~~~L~~~g~~~ 1109 (1858)
||+|..+. ...|....+.......+. ...+..+ +..++.+++||||+|++.++.+++.|++.|+++
T Consensus 358 AT~~~~i~------~~~p~i~~v~~~~~~~i~----~~~~~~~----l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v 423 (666)
T 3o8b_A 358 ATPPGSVT------VPHPNIEEVALSNTGEIP----FYGKAIP----IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINA 423 (666)
T ss_dssp SSCTTCCC------CCCTTEEEEECBSCSSEE----ETTEEEC----GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCE
T ss_pred CCCCcccc------cCCcceEEEeecccchhH----HHHhhhh----hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcE
Confidence 88887432 123322222111111111 0111100 223456899999999999999999999999999
Q ss_pred EEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEE----------EcC-----------CCCChhh
Q psy15269 1110 IPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVI----------IYN-----------LPLSINH 1168 (1858)
Q Consensus 1110 ~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VI----------NyD-----------lP~~~e~ 1168 (1858)
..+||+|+ |++ |+++..+||||||+++|||||+ |++|| ||| +|.+.++
T Consensus 424 ~~lHG~l~---q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~s 492 (666)
T 3o8b_A 424 VAYYRGLD---VSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVS 492 (666)
T ss_dssp EEECTTSC---GGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHH
T ss_pred EEecCCCC---HHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHH
Confidence 99999998 765 4566679999999999999997 99988 899 9999999
Q ss_pred hhhhc--cCcc---eEEEEecCcccHHH--H--HHHHHHHhhcCC
Q psy15269 1169 YVFQI--AGHK---EAIAFYDPVADIGL--A--SSLIKLLEYSNK 1204 (1858)
Q Consensus 1169 YIHRI--ag~~---~aitfvt~~~e~~~--l--~~Ie~~l~~~~q 1204 (1858)
|+||+ +|++ . ++|+++ +|... + +.|++.++....
T Consensus 493 yiQRiGRtGRg~~G~-i~lvt~-~e~~~~~l~~~~i~~~~~~~~~ 535 (666)
T 3o8b_A 493 RSQRRGRTGRGRRGI-YRFVTP-GERPSGMFDSSVLCECYDAGCA 535 (666)
T ss_dssp HHHHHTTBCSSSCEE-EEESCC-CCBCSSBCCHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCCCE-EEEEec-chhhcccccHHHHHHHhcCCcc
Confidence 99999 3223 6 899987 44332 2 555555554433
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-18 Score=225.31 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=66.7
Q ss_pred hhHHHHHHHhhc-------CCcEEEEecChHHHHHHHHHHhhC------------CCeEEEEecCCCCccHHHHHHHHHH
Q psy15269 1070 SQKIVNLLSFLE-------GKRSLIFVKTYRDASRIISAVQDS------------NMMTIPMSNNGTSWSHVECLELLNL 1130 (1858)
Q Consensus 1070 ~~Kl~~Ll~lL~-------~~k~IIFvnTk~~ad~L~~~L~~~------------g~~~~~LHG~ms~~~Q~eR~~~L~~ 1130 (1858)
..|+..|..+|. ..++||||++++.++.+++.|++. |.....+||+|+ +.+|.+++++
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~---~~eR~~~l~~ 688 (797)
T 4a2q_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMT---LPSQKGVLDA 688 (797)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC--------------------------
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCC---HHHHHHHHHH
Confidence 346666666664 279999999999999999999873 667778899999 9999999999
Q ss_pred Hhc-CCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccC--c--ceEEEEecC
Q psy15269 1131 FNT-GKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAG--H--KEAIAFYDP 1185 (1858)
Q Consensus 1131 Fr~-G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag--~--~~aitfvt~ 1185 (1858)
|++ |+++||||||+++||||+|+|++|||||+|+++..|+||+|+ . +.++.|+++
T Consensus 689 F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GRGR~~~g~~i~l~~~ 748 (797)
T 4a2q_A 689 FKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSK 748 (797)
T ss_dssp -----CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC-------CCCEEEEECC
T ss_pred hhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCCCCCCCceEEEEEeC
Confidence 999 999999999999999999999999999999999999999954 2 278999987
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-19 Score=218.67 Aligned_cols=256 Identities=11% Similarity=0.086 Sum_probs=164.2
Q ss_pred HHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchh
Q psy15269 843 YFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTA 922 (1858)
Q Consensus 843 ~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q 922 (1858)
+++|++..+.+- ...+.++.|+|+||.|+-+.+.++.-+ +.++
T Consensus 25 ~l~~~l~~~~~~-------------~~~~lil~Ptr~La~Q~~~~l~~~~v~------------------~~~~------ 67 (440)
T 1yks_A 25 FLPQILAECARR-------------RLRTLVLAPTRVVLSEMKEAFHGLDVK------------------FHTQ------ 67 (440)
T ss_dssp HHHHHHHHHHHT-------------TCCEEEEESSHHHHHHHHHHTTTSCEE------------------EESS------
T ss_pred HHHHHHHHHHhc-------------CCeEEEEcchHHHHHHHHHHHhcCCeE------------------Eecc------
Confidence 466777665431 224588999999999999888743100 0000
Q ss_pred hhhhhhhcccccccccccccCcc--c--------cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHH
Q psy15269 923 IIDIDKFVRDMRHVSNNILMSPN--Y--------ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSV 992 (1858)
Q Consensus 923 ~~dl~~~v~~l~~t~~~ll~~~~--~--------~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~ 992 (1858)
.+ ..+.||+++++... . ........+|+||+++ ++ ......+||..+ .
T Consensus 68 --~~-----~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~----~~-~~~~~~~~~~~~----------~ 125 (440)
T 1yks_A 68 --AF-----SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHF----LD-PASIAARGWAAH----------R 125 (440)
T ss_dssp --CC-----CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTC----CS-HHHHHHHHHHHH----------H
T ss_pred --cc-----eeccCCccceeeecccchhHhhhCcccccCccEEEEECccc----cC-cchHHHHHHHHH----------H
Confidence 00 13788888875211 1 1134566788999988 21 011123333322 2
Q ss_pred hH-HHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECCh--
Q psy15269 993 VN-KFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPK-- 1069 (1858)
Q Consensus 993 Lp-k~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~-- 1069 (1858)
++ +.+|.+++ |||+|+.+.+++.. ..|+.... ..++.
T Consensus 126 ~~~~~~~~l~~--------------------------SAT~~~~~~~~~~~--~~~~~~~~------------~~~~~~~ 165 (440)
T 1yks_A 126 ARANESATILM--------------------------TATPPGTSDEFPHS--NGEIEDVQ------------TDIPSEP 165 (440)
T ss_dssp HHTTSCEEEEE--------------------------CSSCTTCCCSSCCC--SSCEEEEE------------CCCCSSC
T ss_pred hccCCceEEEE--------------------------eCCCCchhhhhhhc--CCCeeEee------------eccChHH
Confidence 22 34566666 99998876655432 12222111 11111
Q ss_pred -hhHHHHHHHhhcCCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccC
Q psy15269 1070 -SQKIVNLLSFLEGKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIG 1148 (1858)
Q Consensus 1070 -~~Kl~~Ll~lL~~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARG 1148 (1858)
.+.+..+.+ ...++||||+|++.++.+++.|++.|+++..+||+ +|.+++++|++|+.+||||||+++||
T Consensus 166 ~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~-------~R~~~~~~F~~g~~~vLVaT~v~e~G 236 (440)
T 1yks_A 166 WNTGHDWILA--DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRK-------TFEREYPTIKQKKPDFILATDIAEMG 236 (440)
T ss_dssp CSSSCHHHHH--CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSS-------SCC--------CCCSEEEESSSTTCC
T ss_pred HHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecch-------hHHHHHhhhcCCCceEEEECChhhee
Confidence 112222222 24799999999999999999999999999999993 36788999999999999999999999
Q ss_pred CCCCCcceEEE-------------------cCCCCChhhhhhhc---cC----cceEEEEe---cCcccHHHHHHHHHHH
Q psy15269 1149 NDFTNVEQVII-------------------YNLPLSINHYVFQI---AG----HKEAIAFY---DPVADIGLASSLIKLL 1199 (1858)
Q Consensus 1149 LDIp~V~~VIN-------------------yDlP~~~e~YIHRI---ag----~~~aitfv---t~~~e~~~l~~Ie~~l 1199 (1858)
||+| +++||| ||.|.+.++|+||+ |+ .+.++.|+ ++ .|...++.+++.+
T Consensus 237 iDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~-~~~~~l~~l~~~~ 314 (440)
T 1yks_A 237 ANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSE-NNAHHVCWLEASM 314 (440)
T ss_dssp TTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCC-CCTTBHHHHHHHH
T ss_pred eccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCCh-hhhhhhhhhhHHh
Confidence 9999 999996 99999999999999 22 22789997 45 7788888999887
Q ss_pred hhcCCCCCC
Q psy15269 1200 EYSNKHVPT 1208 (1858)
Q Consensus 1200 ~~~~q~ip~ 1208 (1858)
.....+++.
T Consensus 315 ~~~~~~l~~ 323 (440)
T 1yks_A 315 LLDNMEVRG 323 (440)
T ss_dssp HHTTSCCGG
T ss_pred ccccccccc
Confidence 666666553
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.3e-18 Score=226.74 Aligned_cols=112 Identities=19% Similarity=0.223 Sum_probs=66.5
Q ss_pred hHHHHHHHhhc-------CCcEEEEecChHHHHHHHHHHhhC------------CCeEEEEecCCCCccHHHHHHHHHHH
Q psy15269 1071 QKIVNLLSFLE-------GKRSLIFVKTYRDASRIISAVQDS------------NMMTIPMSNNGTSWSHVECLELLNLF 1131 (1858)
Q Consensus 1071 ~Kl~~Ll~lL~-------~~k~IIFvnTk~~ad~L~~~L~~~------------g~~~~~LHG~ms~~~Q~eR~~~L~~F 1131 (1858)
.|+..|.++|. ..++||||++++.++.|++.|++. |.....+||+|+ +.+|.+++++|
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~---~~eR~~il~~F 689 (936)
T 4a2w_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMT---LPSQKGVLDAF 689 (936)
T ss_dssp HHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC---------------------------
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCC---HHHHHHHHHHh
Confidence 35555665553 279999999999999999999986 666777799999 99999999999
Q ss_pred hc-CCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccC--cc--eEEEEecC
Q psy15269 1132 NT-GKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAG--HK--EAIAFYDP 1185 (1858)
Q Consensus 1132 r~-G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag--~~--~aitfvt~ 1185 (1858)
++ |+++||||||+++||||+|+|++|||||+|+++..|+||+|+ .. .++.|++.
T Consensus 690 r~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GRGR~~~g~vi~Li~~ 748 (936)
T 4a2w_A 690 KTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSK 748 (936)
T ss_dssp ----CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC-------CCCEEEEESC
T ss_pred hccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCCCCCCCCEEEEEEeC
Confidence 99 999999999999999999999999999999999999999944 22 67888876
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.4e-18 Score=219.21 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=101.5
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEE--
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVII-- 1159 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VIN-- 1159 (1858)
..++||||+|++.++.+++.|++.++++..+||+ +|.+++++|++|+.+||||||+++||||+| +++|||
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~-------eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK-------SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS-------SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH-------HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECC
Confidence 4899999999999999999999999999999993 478899999999999999999999999999 999998
Q ss_pred ------------------cCCCCChhhhhhhc---cC---cc-eEEEEe---cCcccHHHHHHHHHHHhhcCCCCC
Q psy15269 1160 ------------------YNLPLSINHYVFQI---AG---HK-EAIAFY---DPVADIGLASSLIKLLEYSNKHVP 1207 (1858)
Q Consensus 1160 ------------------yDlP~~~e~YIHRI---ag---~~-~aitfv---t~~~e~~~l~~Ie~~l~~~~q~ip 1207 (1858)
||+|.++++|+||+ |+ +. .++.|+ ++ .|..+++.+++.+.....+++
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~-~d~~~l~~ie~~~~l~~~~~~ 556 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSE-DDTMLAHWTEAKILLDNIHLP 556 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCC-CCTTBHHHHHHHHHHHTSCBT
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCCh-hHHHHHHHHHHHHhhhhccCC
Confidence 78999999999999 22 22 789996 45 777888888887765544444
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=207.04 Aligned_cols=125 Identities=17% Similarity=0.147 Sum_probs=107.1
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYN 1161 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyD 1161 (1858)
+.++||||+|++.++.+++.|++.|+++..+||+++ +.+|.+++++|++|+++||||||+++||+|+|+|++||+||
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~---~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d 515 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELD---AFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILD 515 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCC---HHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCC---HHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeC
Confidence 479999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred C-----CCChhhhhhhcc-----CcceEEEEecCcccHHHHHH---------HHHHHhhcCCCCCCCc
Q psy15269 1162 L-----PLSINHYVFQIA-----GHKEAIAFYDPVADIGLASS---------LIKLLEYSNKHVPTHP 1210 (1858)
Q Consensus 1162 l-----P~~~e~YIHRIa-----g~~~aitfvt~~~e~~~l~~---------Ie~~l~~~~q~ip~~~ 1210 (1858)
. |.+.++|+||+| +.|.+++|+++ .+..+.+. ++..++......|...
T Consensus 516 ~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~-~~~~~~~~i~~~~~~r~~~~~~~~~~~~~p~~~ 582 (664)
T 1c4o_A 516 ADKEGFLRSERSLIQTIGRAARNARGEVWLYADR-VSEAMQRAIEETNRRRALQEAYNLEHGITPETV 582 (664)
T ss_dssp TTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSS-CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred CcccCCCCCHHHHHHHHCccCcCCCCEEEEEEcC-CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 8 999999999992 23389999987 55444443 4444555555555433
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.5e-17 Score=218.18 Aligned_cols=261 Identities=11% Similarity=0.016 Sum_probs=193.4
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.++.|+|+||.|+-+.+..... +-.++.|+..+.. ..++++.||.++.. ..+..
T Consensus 131 rvL~l~PtkaLa~Q~~~~l~~~~~---------------~vglltGd~~~~~-------~~~IvV~Tpe~L~~~L~~~~~ 188 (1010)
T 2xgj_A 131 RVIYTSPIKALSNQKYRELLAEFG---------------DVGLMTGDITINP-------DAGCLVMTTEILRSMLYRGSE 188 (1010)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHS---------------CEEEECSSCEECT-------TCSEEEEEHHHHHHHHHHTCT
T ss_pred eEEEECChHHHHHHHHHHHHHHhC---------------CEEEEeCCCccCC-------CCCEEEEcHHHHHHHHHcCcc
Confidence 457899999999999887765443 2245677765432 35688999988764 22233
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccC
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNST 1027 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~ 1027 (1858)
.......+|+|||.+ |.++++... ++.++..+++..+.+++
T Consensus 189 ~l~~l~lVViDEaH~----------l~d~~rg~~----~e~il~~l~~~~~il~L------------------------- 229 (1010)
T 2xgj_A 189 VMREVAWVIFDEVHY----------MRDKERGVV----WEETIILLPDKVRYVFL------------------------- 229 (1010)
T ss_dssp TGGGEEEEEEETGGG----------GGCTTTHHH----HHHHHHHSCTTCEEEEE-------------------------
T ss_pred hhhcCCEEEEechhh----------hcccchhHH----HHHHHHhcCCCCeEEEE-------------------------
Confidence 444566778888887 788777666 88888888877777777
Q ss_pred CCCCCcHhH--HHHHHHhcCCCEEEEEccCCcccEEEEEEECC---------h---------------------------
Q psy15269 1028 DSLFSWGDI--EEESNIEVEDPIMKLVKPSSVHLVKQYLIRTP---------K--------------------------- 1069 (1858)
Q Consensus 1028 eSAT~p~~I--~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~---------~--------------------------- 1069 (1858)
|||+|... .+.......+|+.+.........++++++..+ .
T Consensus 230 -SATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 308 (1010)
T 2xgj_A 230 -SATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNST 308 (1010)
T ss_dssp -ECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----------
T ss_pred -cCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccc
Confidence 99988643 23333445678887766555556777766422 0
Q ss_pred -------------------hhHHHHHHHhhc---CCcEEEEecChHHHHHHHHHHhhCCCe-------------------
Q psy15269 1070 -------------------SQKIVNLLSFLE---GKRSLIFVKTYRDASRIISAVQDSNMM------------------- 1108 (1858)
Q Consensus 1070 -------------------~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~~~g~~------------------- 1108 (1858)
..++..++..+. ..++||||+|++.|+.++..|...++.
T Consensus 309 ~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l 388 (1010)
T 2xgj_A 309 DSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALL 388 (1010)
T ss_dssp --------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTS
T ss_pred ccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhc
Confidence 112333444443 258999999999999999999876553
Q ss_pred --------------------EEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEE----cCC--
Q psy15269 1109 --------------------TIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVII----YNL-- 1162 (1858)
Q Consensus 1109 --------------------~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VIN----yDl-- 1162 (1858)
+..+||+|+ +.+|..+++.|++|+++|||||+++++|||+|++++||+ ||.
T Consensus 389 ~~~d~~l~~~~~l~~~l~~gI~~~Hggl~---~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~ 465 (1010)
T 2xgj_A 389 PETDRELPQIKHILPLLRRGIGIHHSGLL---PILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQ 465 (1010)
T ss_dssp CGGGTTCHHHHHHHHHHHHTEEEESTTSC---HHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSC
T ss_pred chhhhcchhHHHHHHHHhCCeeEECCCCC---HHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcC
Confidence 788999999 999999999999999999999999999999999999999 999
Q ss_pred --CCChhhhhhhc---cCc-----ceEEEEecCcccHHHHHHH
Q psy15269 1163 --PLSINHYVFQI---AGH-----KEAIAFYDPVADIGLASSL 1195 (1858)
Q Consensus 1163 --P~~~e~YIHRI---ag~-----~~aitfvt~~~e~~~l~~I 1195 (1858)
|.++..|+||+ |+. |.++.++++..+...++.+
T Consensus 466 ~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 466 FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred CccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 99999999999 221 4688898874454444443
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-16 Score=217.29 Aligned_cols=254 Identities=9% Similarity=-0.005 Sum_probs=192.5
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc---hhhhhhhhh-cccccccccccccCcc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS---TAIIDIDKF-VRDMRHVSNNILMSPN 945 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~---~q~~dl~~~-v~~l~~t~~~ll~~~~ 945 (1858)
.+.++-|+|+||.|.-..+...+.+.++.. ..+.|+.... ....++.++ +++++.|+..+-...
T Consensus 654 ~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v-----------~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~- 721 (1151)
T 2eyq_A 654 QVAVLVPTTLLAQQHYDNFRDRFANWPVRI-----------EMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV- 721 (1151)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHSTTTTCCE-----------EEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCC-
T ss_pred eEEEEechHHHHHHHHHHHHHHhhcCCCeE-----------EEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCc-
Confidence 568899999999999888876666655532 2233332222 223344454 788899986553222
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
.......+|+||+++ + ..+ ..++++.+++.++.+++
T Consensus 722 --~~~~l~lvIiDEaH~----~-----------g~~----~~~~l~~l~~~~~vl~l----------------------- 757 (1151)
T 2eyq_A 722 --KFKDLGLLIVDEEHR----F-----------GVR----HKERIKAMRANVDILTL----------------------- 757 (1151)
T ss_dssp --CCSSEEEEEEESGGG----S-----------CHH----HHHHHHHHHTTSEEEEE-----------------------
T ss_pred --cccccceEEEechHh----c-----------ChH----HHHHHHHhcCCCCEEEE-----------------------
Confidence 223446678999988 2 223 45666666666677777
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhh-cCCcEEEEecChHHHHHHHHHHhh
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFL-EGKRSLIFVKTYRDASRIISAVQD 1104 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL-~~~k~IIFvnTk~~ad~L~~~L~~ 1104 (1858)
|||+++....++...+.++..+...+.....+++++....+......++..+ ++.+++|||++++.++.+++.|++
T Consensus 758 ---SATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~ 834 (1151)
T 2eyq_A 758 ---TATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAE 834 (1151)
T ss_dssp ---ESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHH
T ss_pred ---cCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHH
Confidence 9999888888888888887766655555555777777766655556665555 458999999999999999999998
Q ss_pred C--CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCC-CCChhhhhhhc---cC---
Q psy15269 1105 S--NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNL-PLSINHYVFQI---AG--- 1175 (1858)
Q Consensus 1105 ~--g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDl-P~~~e~YIHRI---ag--- 1175 (1858)
. ++.+..+||+|+ +.+|.+++++|++|+.+|||||+++++|||+|++++||+++. +.++..|+||+ ++
T Consensus 835 ~~p~~~v~~lhg~~~---~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~ 911 (1151)
T 2eyq_A 835 LVPEARIAIGHGQMR---ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 911 (1151)
T ss_dssp HCTTSCEEECCSSCC---HHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTB
T ss_pred hCCCCeEEEEeCCCC---HHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCC
Confidence 6 889999999999 999999999999999999999999999999999999999998 56889999998 22
Q ss_pred cceEEEEecC
Q psy15269 1176 HKEAIAFYDP 1185 (1858)
Q Consensus 1176 ~~~aitfvt~ 1185 (1858)
++.++.++.+
T Consensus 912 ~g~~~ll~~~ 921 (1151)
T 2eyq_A 912 QAYAWLLTPH 921 (1151)
T ss_dssp CEEEEEEECC
T ss_pred ceEEEEEECC
Confidence 2267877765
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-16 Score=211.88 Aligned_cols=240 Identities=9% Similarity=0.021 Sum_probs=175.5
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.++.|+|+|+.|+-+.+..+..+ ++..++.|+..... ..++++.||.+++. .....
T Consensus 84 ~vlvl~PtraLa~Q~~~~l~~~~~~-------------~~v~~l~G~~~~~~-------~~~IlV~Tpe~L~~~l~~~~~ 143 (997)
T 4a4z_A 84 KTIYTSPIKALSNQKFRDFKETFDD-------------VNIGLITGDVQINP-------DANCLIMTTEILRSMLYRGAD 143 (997)
T ss_dssp EEEEEESCGGGHHHHHHHHHTTC---------------CCEEEECSSCEECT-------TSSEEEEEHHHHHHHHHHTCS
T ss_pred eEEEEeCCHHHHHHHHHHHHHHcCC-------------CeEEEEeCCCccCC-------CCCEEEECHHHHHHHHHhCch
Confidence 3588999999999998888775532 23356677765432 25678999999875 22233
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccC
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNST 1027 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~ 1027 (1858)
.......+++|||++ +.++||... +++|+..+++..+.+++
T Consensus 144 ~l~~l~lvViDEaH~----------l~d~~~g~~----~e~ii~~l~~~v~iIlL------------------------- 184 (997)
T 4a4z_A 144 LIRDVEFVIFDEVHY----------VNDQDRGVV----WEEVIIMLPQHVKFILL------------------------- 184 (997)
T ss_dssp GGGGEEEEEECCTTC----------CCTTCTTCC----HHHHHHHSCTTCEEEEE-------------------------
T ss_pred hhcCCCEEEEECccc----------ccccchHHH----HHHHHHhcccCCCEEEE-------------------------
Confidence 344566677999987 889999999 99999999887788888
Q ss_pred CCCCCcHhHHHHHHHhc---CCCEEEEEccCCcccEEEEEEE--------------------------------------
Q psy15269 1028 DSLFSWGDIEEESNIEV---EDPIMKLVKPSSVHLVKQYLIR-------------------------------------- 1066 (1858)
Q Consensus 1028 eSAT~p~~I~~la~~~L---~dpv~I~v~~~~~~~I~Q~~~~-------------------------------------- 1066 (1858)
|||+|... +++..+- ..++.+.........+.++++.
T Consensus 185 -SAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 262 (997)
T 4a4z_A 185 -SATVPNTY-EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKT 262 (997)
T ss_dssp -ECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----------
T ss_pred -cCCCCChH-HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccc
Confidence 99987554 4444332 2344433322222223332221
Q ss_pred -------------------------------------------------------CChhhHHHHHHHhhcC---CcEEEE
Q psy15269 1067 -------------------------------------------------------TPKSQKIVNLLSFLEG---KRSLIF 1088 (1858)
Q Consensus 1067 -------------------------------------------------------v~~~~Kl~~Ll~lL~~---~k~IIF 1088 (1858)
.+...++..++..+.. .++|||
T Consensus 263 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF 342 (997)
T 4a4z_A 263 DNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVF 342 (997)
T ss_dssp ------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEE
Confidence 1233445666666653 689999
Q ss_pred ecChHHHHHHHHHHhhCCC---------------------------------------eEEEEecCCCCccHHHHHHHHH
Q psy15269 1089 VKTYRDASRIISAVQDSNM---------------------------------------MTIPMSNNGTSWSHVECLELLN 1129 (1858)
Q Consensus 1089 vnTk~~ad~L~~~L~~~g~---------------------------------------~~~~LHG~ms~~~Q~eR~~~L~ 1129 (1858)
|+|++.|+.++..|.+.++ .+..+||+|+ +.+|..+++
T Consensus 343 ~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~---~~~R~~v~~ 419 (997)
T 4a4z_A 343 VFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLL---PIVKELIEI 419 (997)
T ss_dssp CSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSC---HHHHHHHHH
T ss_pred ECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCC---HHHHHHHHH
Confidence 9999999999999988776 4789999999 999999999
Q ss_pred HHhcCCCcEEEeccccccCCCCCCcceEE--------EcCCCCChhhhhhhc
Q psy15269 1130 LFNTGKSSLVIMTLSDFIGNDFTNVEQVI--------IYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1130 ~Fr~G~~~ILVATDVAARGLDIp~V~~VI--------NyDlP~~~e~YIHRI 1173 (1858)
.|++|+++|||||+++++|||+|++.+|| +++.|.++..|+||+
T Consensus 420 ~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~ 471 (997)
T 4a4z_A 420 LFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMA 471 (997)
T ss_dssp HHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHH
T ss_pred HHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHh
Confidence 99999999999999999999999966555 334444999999999
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-16 Score=194.73 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=98.5
Q ss_pred hhHHHHHHHhhc-------CCcEEEEecChHHHHHHHHHHhhCCCeEEEEec--------CCCCccHHHHHHHHHHHhcC
Q psy15269 1070 SQKIVNLLSFLE-------GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSN--------NGTSWSHVECLELLNLFNTG 1134 (1858)
Q Consensus 1070 ~~Kl~~Ll~lL~-------~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG--------~ms~~~Q~eR~~~L~~Fr~G 1134 (1858)
..|+..|.+++. ..++||||++++.++.+++.|++.|+.+..+|| +|+ +.+|.+++++|++|
T Consensus 342 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~---~~~r~~~~~~F~~~ 418 (494)
T 1wp9_A 342 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLS---QREQKLILDEFARG 418 (494)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC----------CCHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCC---HHHHHHHHHHHhcC
Confidence 345555555542 479999999999999999999999999999999 888 99999999999999
Q ss_pred CCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc---cC--cceEEEEecC
Q psy15269 1135 KSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI---AG--HKEAIAFYDP 1185 (1858)
Q Consensus 1135 ~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI---ag--~~~aitfvt~ 1185 (1858)
+.+|||||+++++|||+|++++||+||+|+++..|+||+ ++ .+.++.|+++
T Consensus 419 ~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~g~~~~l~~~ 474 (494)
T 1wp9_A 419 EFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAK 474 (494)
T ss_dssp SCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEET
T ss_pred CceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCCceEEEEEec
Confidence 999999999999999999999999999999999999999 22 2378889887
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-17 Score=207.03 Aligned_cols=176 Identities=13% Similarity=0.045 Sum_probs=122.2
Q ss_pred cccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCC
Q psy15269 949 DVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTD 1028 (1858)
Q Consensus 949 ~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~e 1028 (1858)
......+|+|||++ .+ ...+.++||..+ +. .++.+|.+++
T Consensus 110 l~~~~~iViDEaH~----~~-~~~~~~~~~~~~----~~-----~~~~~~~il~-------------------------- 149 (459)
T 2z83_A 110 VPNYNLFVMDEAHF----TD-PASIAARGYIAT----KV-----ELGEAAAIFM-------------------------- 149 (459)
T ss_dssp CCCCSEEEESSTTC----CS-HHHHHHHHHHHH----HH-----HTTSCEEEEE--------------------------
T ss_pred ccCCcEEEEECCcc----CC-chhhHHHHHHHH----Hh-----ccCCccEEEE--------------------------
Confidence 34556788999987 22 122445555444 11 1234566777
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhcCCcEEEEecChHHHHHHHHHHhhCCCe
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEGKRSLIFVKTYRDASRIISAVQDSNMM 1108 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~~k~IIFvnTk~~ad~L~~~L~~~g~~ 1108 (1858)
|||+|..+..++.. +.|+.+........ ....++..+.+ ..+++||||+|++.++.+++.|++.|+.
T Consensus 150 SAT~~~~~~~~~~~--~~pi~~~~~~~~~~---------~~~~~~~~l~~--~~~~~LVF~~s~~~~~~l~~~L~~~g~~ 216 (459)
T 2z83_A 150 TATPPGTTDPFPDS--NAPIHDLQDEIPDR---------AWSSGYEWITE--YAGKTVWFVASVKMGNEIAMCLQRAGKK 216 (459)
T ss_dssp CSSCTTCCCSSCCC--SSCEEEEECCCCSS---------CCSSCCHHHHH--CCSCEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred EcCCCcchhhhccC--CCCeEEecccCCcc---------hhHHHHHHHHh--cCCCEEEEeCChHHHHHHHHHHHhcCCc
Confidence 99999876554432 45554321100000 00111222221 1478999999999999999999999999
Q ss_pred EEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEE--------------------cCCCCChhh
Q psy15269 1109 TIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVII--------------------YNLPLSINH 1168 (1858)
Q Consensus 1109 ~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VIN--------------------yDlP~~~e~ 1168 (1858)
+..+||+ +|.+++++|++|+.+||||||+++||||||+ ++||| ||+|.+.++
T Consensus 217 v~~lh~~-------~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~ 288 (459)
T 2z83_A 217 VIQLNRK-------SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSAS 288 (459)
T ss_dssp EEEESTT-------CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHH
T ss_pred EEecCHH-------HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHH
Confidence 9999995 3567899999999999999999999999999 99999 889999999
Q ss_pred hhhhc---c--C--cceEEEEecC
Q psy15269 1169 YVFQI---A--G--HKEAIAFYDP 1185 (1858)
Q Consensus 1169 YIHRI---a--g--~~~aitfvt~ 1185 (1858)
|+||+ | | .+.++.|+++
T Consensus 289 ~~QR~GRaGR~g~~~G~~~~~~~~ 312 (459)
T 2z83_A 289 AAQRRGRVGRNPNQVGDEYHYGGA 312 (459)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSC
T ss_pred HHHhccccCCCCCCCCeEEEEEcc
Confidence 99999 2 2 2368999987
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.62 E-value=9.3e-17 Score=199.79 Aligned_cols=95 Identities=15% Similarity=0.159 Sum_probs=85.3
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYN 1161 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyD 1161 (1858)
.+++||||+|++.++.+++.|++.|+.+..+||++. .+++++|++|+.+||||||+++||||+|+ ++|||||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~-------~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~ 259 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF-------DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPR 259 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH-------HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH-------HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECC
Confidence 478999999999999999999999999999999873 46899999999999999999999999999 9999999
Q ss_pred --------------------CCCChhhhhhhc-----cCc--ceEEEEec
Q psy15269 1162 --------------------LPLSINHYVFQI-----AGH--KEAIAFYD 1184 (1858)
Q Consensus 1162 --------------------lP~~~e~YIHRI-----ag~--~~aitfvt 1184 (1858)
+|.+.++|+||+ +|+ +.++.|+.
T Consensus 260 ~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 260 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred CcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 999999999999 222 25666654
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.61 E-value=8.8e-16 Score=198.95 Aligned_cols=219 Identities=10% Similarity=0.004 Sum_probs=153.6
Q ss_pred eechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc-----Cccc
Q psy15269 872 WLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM-----SPNY 946 (1858)
Q Consensus 872 ~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~-----~~~~ 946 (1858)
.++-|+|+||.|+-+.+..+ |. +-.++.||.. +++.||+++.+ .+.+
T Consensus 183 l~l~PtR~LA~Qi~~~l~~~--g~-------------~v~lltG~~~-------------~iv~TpGr~~~il~~T~e~~ 234 (677)
T 3rc3_A 183 VYCGPLKLLAHEIFEKSNAA--GV-------------PCDLVTGEER-------------VTVQPNGKQASHVSCTVEMC 234 (677)
T ss_dssp EEEESSHHHHHHHHHHHHHT--TC-------------CEEEECSSCE-------------ECCSTTCCCCSEEEEEGGGC
T ss_pred EEEeCHHHHHHHHHHHHHhc--CC-------------cEEEEECCee-------------EEecCCCcccceeEecHhHh
Confidence 67899999999998886554 22 2245566644 25566665553 1122
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhH-HHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVN-KFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lp-k~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
........+|+||+++ |.+++|... ++.++..++ +.++.+++
T Consensus 235 ~l~~~v~lvVIDEaH~----------l~d~~~g~~----~~~~l~~l~~~~i~il~~----------------------- 277 (677)
T 3rc3_A 235 SVTTPYEVAVIDEIQM----------IRDPARGWA----WTRALLGLCAEEVHLCGE----------------------- 277 (677)
T ss_dssp CSSSCEEEEEECSGGG----------GGCTTTHHH----HHHHHHHCCEEEEEEEEC-----------------------
T ss_pred hhcccCCEEEEeccee----------cCCccchHH----HHHHHHccCccceEEEec-----------------------
Confidence 2333445667888877 888888888 888877776 33344444
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhcCCcEEEEecChHHHHHHHHHHhhC
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEGKRSLIFVKTYRDASRIISAVQDS 1105 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~~k~IIFvnTk~~ad~L~~~L~~~ 1105 (1858)
||| .+.+++++... .+++.+.-... ...+.. . . ..+..+.+ + ....||||+|++.++.+++.|++.
T Consensus 278 ---SAT-~~~i~~l~~~~-~~~~~v~~~~r-~~~l~~---~-~--~~l~~l~~-~-~~g~iIf~~s~~~ie~la~~L~~~ 343 (677)
T 3rc3_A 278 ---PAA-IDLVMELMYTT-GEEVEVRDYKR-LTPISV---L-D--HALESLDN-L-RPGDCIVCFSKNDIYSVSRQIEIR 343 (677)
T ss_dssp ---GGG-HHHHHHHHHHH-TCCEEEEECCC-SSCEEE---C-S--SCCCSGGG-C-CTTEEEECSSHHHHHHHHHHHHHT
T ss_pred ---cch-HHHHHHHHHhc-CCceEEEEeee-cchHHH---H-H--HHHHHHHh-c-CCCCEEEEcCHHHHHHHHHHHHhc
Confidence 666 34566666544 34444322111 111110 0 0 00000111 1 245699999999999999999999
Q ss_pred CCeEEEEecCCCCccHHHHHHHHHHHhc--CCCcEEEeccccccCCCCCCcceEEEcCC--------------CCChhhh
Q psy15269 1106 NMMTIPMSNNGTSWSHVECLELLNLFNT--GKSSLVIMTLSDFIGNDFTNVEQVIIYNL--------------PLSINHY 1169 (1858)
Q Consensus 1106 g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~--G~~~ILVATDVAARGLDIp~V~~VINyDl--------------P~~~e~Y 1169 (1858)
++.+..+||+|+ +.+|.++++.|++ |+.+||||||+++||||+ +|++||+||+ |.+..+|
T Consensus 344 g~~v~~lHG~L~---~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~ 419 (677)
T 3rc3_A 344 GLESAVIYGSLP---PGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQA 419 (677)
T ss_dssp TCCCEEECTTSC---HHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHH
T ss_pred CCCeeeeeccCC---HHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHH
Confidence 999999999999 9999999999999 999999999999999999 9999999999 7789999
Q ss_pred hhhc
Q psy15269 1170 VFQI 1173 (1858)
Q Consensus 1170 IHRI 1173 (1858)
+||+
T Consensus 420 ~QR~ 423 (677)
T 3rc3_A 420 LQIA 423 (677)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9999
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=189.35 Aligned_cols=253 Identities=14% Similarity=-0.000 Sum_probs=169.7
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.++-|.|+||.++-+.+..+.. ... +-....|+.....+ .+ ...++++.||+.+.. ..+..
T Consensus 77 ~il~i~P~r~La~q~~~~~~~~~~-~g~-----------~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~ 141 (715)
T 2va8_A 77 KAIYVTPLRALTNEKYLTFKDWEL-IGF-----------KVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPE 141 (715)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGGG-GTC-----------CEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCG
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhc-CCC-----------EEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChh
Confidence 458899999999999888743211 111 22334565443222 12 356788999988774 22222
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccC
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNST 1027 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~ 1027 (1858)
......-+|+|||.+ +.+.++... ++.|+..++ ..+.+..
T Consensus 142 ~l~~~~~vIiDE~H~----------l~~~~~~~~----l~~i~~~~~-~~~ii~l------------------------- 181 (715)
T 2va8_A 142 WLNEVNYFVLDELHY----------LNDPERGPV----VESVTIRAK-RRNLLAL------------------------- 181 (715)
T ss_dssp GGGGEEEEEECSGGG----------GGCTTTHHH----HHHHHHHHH-TSEEEEE-------------------------
T ss_pred HhhccCEEEEechhh----------cCCcccchH----HHHHHHhcc-cCcEEEE-------------------------
Confidence 244566677999977 555566666 777777776 3344455
Q ss_pred CCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEE------------EEECC--------hhhHHHHHHHhhcC-CcEE
Q psy15269 1028 DSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQY------------LIRTP--------KSQKIVNLLSFLEG-KRSL 1086 (1858)
Q Consensus 1028 eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~------------~~~v~--------~~~Kl~~Ll~lL~~-~k~I 1086 (1858)
|||++. .+++++.+ ..+. +..... ...+.+. +...+ ...+...+.+.+.. .++|
T Consensus 182 -SATl~n-~~~~~~~l-~~~~-~~~~~r-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 256 (715)
T 2va8_A 182 -SATISN-YKQIAKWL-GAEP-VATNWR-PVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVL 256 (715)
T ss_dssp -ESCCTT-HHHHHHHH-TCEE-EECCCC-SSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHTTTCCEE
T ss_pred -cCCCCC-HHHHHHHh-CCCc-cCCCCC-CCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHhcCCCEE
Confidence 899875 35666544 3221 111100 0111111 11111 24556666666654 8999
Q ss_pred EEecChHHHHHHHHHHhhCC------------------------------------CeEEEEecCCCCccHHHHHHHHHH
Q psy15269 1087 IFVKTYRDASRIISAVQDSN------------------------------------MMTIPMSNNGTSWSHVECLELLNL 1130 (1858)
Q Consensus 1087 IFvnTk~~ad~L~~~L~~~g------------------------------------~~~~~LHG~ms~~~Q~eR~~~L~~ 1130 (1858)
|||++++.++.+++.|.+.. ..+..+||+|+ +.+|..+++.
T Consensus 257 VF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~---~~~r~~v~~~ 333 (715)
T 2va8_A 257 VFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLS---KALRDLIEEG 333 (715)
T ss_dssp EECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSC---HHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCC---HHHHHHHHHH
Confidence 99999999999999998642 24889999999 9999999999
Q ss_pred HhcCCCcEEEeccccccCCCCCCcceEEE----cC-------CCCChhhhhhhc--cCc------ceEEEEecC
Q psy15269 1131 FNTGKSSLVIMTLSDFIGNDFTNVEQVII----YN-------LPLSINHYVFQI--AGH------KEAIAFYDP 1185 (1858)
Q Consensus 1131 Fr~G~~~ILVATDVAARGLDIp~V~~VIN----yD-------lP~~~e~YIHRI--ag~------~~aitfvt~ 1185 (1858)
|++|+.+|||||+++++|||+|++++||+ || .|.+..+|+||+ ||+ |.++.++++
T Consensus 334 f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 407 (715)
T 2va8_A 334 FRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRD 407 (715)
T ss_dssp HHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSC
T ss_pred HHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCC
Confidence 99999999999999999999999999999 99 899999999999 322 368888876
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=184.19 Aligned_cols=165 Identities=13% Similarity=0.032 Sum_probs=125.3
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCC-cccEEE-EEEECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSS-VHLVKQ-YLIRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISA 1101 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~-~~~I~Q-~~~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~ 1101 (1858)
++|...+.+++.+.|--+ .+.+.... ...+.+ ..+...+.+|...+++.+. ..++||||+|++.++.++..
T Consensus 416 TGTa~te~~Ef~~iY~l~--vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~ 493 (822)
T 3jux_A 416 TGTAKTEESEFVQVYGME--VVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSM 493 (822)
T ss_dssp ESSCGGGHHHHHHHSCCC--EEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHhCCe--EEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHH
Confidence 457777778887777433 33443222 223444 3567788899999988775 36899999999999999999
Q ss_pred HhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCC--------CcceEEEcCCCCChhhhhhhc
Q psy15269 1102 VQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFT--------NVEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1102 L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp--------~V~~VINyDlP~~~e~YIHRI 1173 (1858)
|++.|+++..|||+.. +++|..+..+|+.| .|+||||+|+||+||+ ++.||||||+|.+.+.|+||+
T Consensus 494 L~~~Gi~~~vLhgkq~---~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qri 568 (822)
T 3jux_A 494 LKKKGIPHQVLNAKYH---EKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLR 568 (822)
T ss_dssp HHTTTCCCEEECSCHH---HHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHH
T ss_pred HHHCCCCEEEeeCCch---HHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhh
Confidence 9999999999999866 66666666667766 6999999999999998 667999999999999999999
Q ss_pred ---cCc---ceEEEEecCcccHHH----HHHHHHHHhh
Q psy15269 1174 ---AGH---KEAIAFYDPVADIGL----ASSLIKLLEY 1201 (1858)
Q Consensus 1174 ---ag~---~~aitfvt~~~e~~~----l~~Ie~~l~~ 1201 (1858)
|++ |.+++|++. +|..+ -..+.+++..
T Consensus 569 GRTGRqG~~G~a~~fvsl-eD~l~r~fg~~~~~~~m~~ 605 (822)
T 3jux_A 569 GRAGRQGDPGESIFFLSL-EDDLLRIFGSEQIGKVMNI 605 (822)
T ss_dssp TTSSCSSCCCEEEEEEET-TSHHHHHTTHHHHHHHHHH
T ss_pred CccccCCCCeeEEEEech-hHHHHHhhhHHHHHHHHHH
Confidence 222 389999998 44222 1345555544
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-15 Score=196.28 Aligned_cols=273 Identities=14% Similarity=-0.010 Sum_probs=182.4
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.++-|+|+||.++-+.+..+.. .. ++-..+.|+....... ....++++.||..+.. ..+..
T Consensus 70 ~~l~i~P~raLa~q~~~~~~~l~~-~g-----------~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~ 134 (720)
T 2zj8_A 70 KAVYIVPLKALAEEKFQEFQDWEK-IG-----------LRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSS 134 (720)
T ss_dssp EEEEECSSGGGHHHHHHHTGGGGG-GT-----------CCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCT
T ss_pred EEEEEcCcHHHHHHHHHHHHHHHh-cC-----------CEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChh
Confidence 358899999999999888753321 11 1234456665433321 2356788999988764 22222
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccC
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNST 1027 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~ 1027 (1858)
......-+|+|||.. +.+.++... ++.|+..+++..+.+.+
T Consensus 135 ~l~~~~~vIiDE~H~----------l~~~~r~~~----~~~ll~~l~~~~~ii~l------------------------- 175 (720)
T 2zj8_A 135 WIKDVKILVADEIHL----------IGSRDRGAT----LEVILAHMLGKAQIIGL------------------------- 175 (720)
T ss_dssp TGGGEEEEEEETGGG----------GGCTTTHHH----HHHHHHHHBTTBEEEEE-------------------------
T ss_pred hhhcCCEEEEECCcc----------cCCCcccHH----HHHHHHHhhcCCeEEEE-------------------------
Confidence 234556677899877 666666666 88887777643344455
Q ss_pred CCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEE------ECC-----hhhHHHHHHHhhcC-CcEEEEecChHHH
Q psy15269 1028 DSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLI------RTP-----KSQKIVNLLSFLEG-KRSLIFVKTYRDA 1095 (1858)
Q Consensus 1028 eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~------~v~-----~~~Kl~~Ll~lL~~-~k~IIFvnTk~~a 1095 (1858)
|||+|. .+++++.+ ..+. +... .....+...+. ... ...+...+.+.+.. .++||||+|++.+
T Consensus 176 -SATl~n-~~~~~~~l-~~~~-~~~~-~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~ 250 (720)
T 2zj8_A 176 -SATIGN-PEELAEWL-NAEL-IVSD-WRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKA 250 (720)
T ss_dssp -ECCCSC-HHHHHHHT-TEEE-EECC-CCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHTTCCEEEECSCHHHH
T ss_pred -cCCcCC-HHHHHHHh-CCcc-cCCC-CCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhCCCCEEEEecCHHHH
Confidence 899875 45666543 3211 1111 11111222221 111 23445566665554 8999999999999
Q ss_pred HHHHHHHhhC------------------C---------------CeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEec
Q psy15269 1096 SRIISAVQDS------------------N---------------MMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMT 1142 (1858)
Q Consensus 1096 d~L~~~L~~~------------------g---------------~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVAT 1142 (1858)
+.++..|.+. + ..+..+||+|+ +.+|..+++.|++|+++|||||
T Consensus 251 ~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~---~~~R~~v~~~f~~g~~~vlvaT 327 (720)
T 2zj8_A 251 ERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLG---RDERVLVEENFRKGIIKAVVAT 327 (720)
T ss_dssp HHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSC---HHHHHHHHHHHHTTSSCEEEEC
T ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCC---HHHHHHHHHHHHCCCCeEEEEC
Confidence 9999999753 1 24899999999 9999999999999999999999
Q ss_pred cccccCCCCCCcceEEE----cC----CCCChhhhhhhc--cCc------ceEEEEecCcccHHHHHHHHHHHhhcCCCC
Q psy15269 1143 LSDFIGNDFTNVEQVII----YN----LPLSINHYVFQI--AGH------KEAIAFYDPVADIGLASSLIKLLEYSNKHV 1206 (1858)
Q Consensus 1143 DVAARGLDIp~V~~VIN----yD----lP~~~e~YIHRI--ag~------~~aitfvt~~~e~~~l~~Ie~~l~~~~q~i 1206 (1858)
+++++|+|+|++++||+ || .|.+..+|+||+ ||+ |.++.++++ .+ ....+++++.....++
T Consensus 328 ~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~-~~--~~~~~~~~~~~~~~~i 404 (720)
T 2zj8_A 328 PTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTS-DD--PREVMNHYIFGKPEKL 404 (720)
T ss_dssp STTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSS-SC--HHHHHHHHTTSCCCCC
T ss_pred cHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecC-cc--HHHHHHHHhcCCCCCc
Confidence 99999999999999999 88 699999999999 332 258888887 44 2223445555444444
Q ss_pred C
Q psy15269 1207 P 1207 (1858)
Q Consensus 1207 p 1207 (1858)
.
T Consensus 405 ~ 405 (720)
T 2zj8_A 405 F 405 (720)
T ss_dssp C
T ss_pred E
Confidence 3
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.5e-16 Score=206.14 Aligned_cols=250 Identities=11% Similarity=0.037 Sum_probs=168.4
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccc-cCCchhhhhhhhhcccccccccccccC-cccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAG-LEPSTAIIDIDKFVRDMRHVSNNILMS-PNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG-~~~~~q~~dl~~~v~~l~~t~~~ll~~-~~~~ 947 (1858)
.+.++.|+|++|.++.+.+.... .... ....|+ +.... ......++++.||+.++.. ....
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~~---~~~v-----------~~~vG~~i~~~~---~~~~~~~I~v~T~G~l~r~l~~~~ 204 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEEM---DVKL-----------GEEVGYSIRFEN---KTSNKTILKYMTDGMLLREAMEDH 204 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHT---TCCB-----------TTTEEEEETTEE---ECCTTCSEEEEEHHHHHHHHHHST
T ss_pred eEEecCchHHHHHHHHHHHHHHh---CCch-----------hheecceecccc---ccCCCCCEEEECHHHHHHHHhhCc
Confidence 35778899999999977543221 1111 112222 11111 1123456788899888741 1112
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHH---HHHHHhhhccCCCCccccccccccccccc
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNK---FRAELLSAVSNAPSFDDNNVSMGVTSTQH 1024 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk---~RQtLLf~~~~~~s~~~~~~s~~~~~~~~ 1024 (1858)
.......+|+||++. ++++. + .+..+++.+.+ ..+++++
T Consensus 205 ~l~~~~~lIlDEah~---------R~ld~----d---~~~~~l~~l~~~~~~~~iIl~---------------------- 246 (773)
T 2xau_A 205 DLSRYSCIILDEAHE---------RTLAT----D---ILMGLLKQVVKRRPDLKIIIM---------------------- 246 (773)
T ss_dssp TCTTEEEEEECSGGG---------CCHHH----H---HHHHHHHHHHHHCTTCEEEEE----------------------
T ss_pred cccCCCEEEecCccc---------cccch----H---HHHHHHHHHHHhCCCceEEEE----------------------
Confidence 345567788999973 02221 1 12222222222 2244555
Q ss_pred ccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHH----HHHhh---cCCcEEEEecChHHHHH
Q psy15269 1025 NSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVN----LLSFL---EGKRSLIFVKTYRDASR 1097 (1858)
Q Consensus 1025 ~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~----Ll~lL---~~~k~IIFvnTk~~ad~ 1097 (1858)
|||.+. +.+++ ++.++..+.+... ...++++|...+..++... +++++ ..+++||||++++.++.
T Consensus 247 ----SAT~~~--~~l~~-~~~~~~vi~v~gr-~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~ 318 (773)
T 2xau_A 247 ----SATLDA--EKFQR-YFNDAPLLAVPGR-TYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIED 318 (773)
T ss_dssp ----ESCSCC--HHHHH-HTTSCCEEECCCC-CCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHH
T ss_pred ----eccccH--HHHHH-HhcCCCcccccCc-ccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHH
Confidence 888863 45554 4454444555433 2357777777666555433 33333 24899999999999999
Q ss_pred HHHHHhh-----------CCCeEEEEecCCCCccHHHHHHHHHHHh-----cCCCcEEEeccccccCCCCCCcceEEEcC
Q psy15269 1098 IISAVQD-----------SNMMTIPMSNNGTSWSHVECLELLNLFN-----TGKSSLVIMTLSDFIGNDFTNVEQVIIYN 1161 (1858)
Q Consensus 1098 L~~~L~~-----------~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr-----~G~~~ILVATDVAARGLDIp~V~~VINyD 1161 (1858)
+++.|++ .++.+..+||+|+ +.+|.++++.|+ +|+.+||||||+|++|||||+|++||+||
T Consensus 319 l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~---~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g 395 (773)
T 2xau_A 319 AVRKISLEGDQLVREEGCGPLSVYPLYGSLP---PHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPG 395 (773)
T ss_dssp HHHHHHHHHHHHHHHHCCCCEEEEEECTTCC---HHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECS
T ss_pred HHHHHHHHHHhhcccccCCCeEEEEeCCCCC---HHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCC
Confidence 9999985 6889999999999 999999999999 99999999999999999999999999998
Q ss_pred C------------------CCChhhhhhhc--cCc---ceEEEEecC
Q psy15269 1162 L------------------PLSINHYVFQI--AGH---KEAIAFYDP 1185 (1858)
Q Consensus 1162 l------------------P~~~e~YIHRI--ag~---~~aitfvt~ 1185 (1858)
+ |.+.++|+||+ +|+ |.++.|+++
T Consensus 396 ~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~ 442 (773)
T 2xau_A 396 FSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTE 442 (773)
T ss_dssp EEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCH
T ss_pred CccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecH
Confidence 8 88999999999 332 378988876
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.1e-16 Score=203.99 Aligned_cols=254 Identities=11% Similarity=0.011 Sum_probs=164.5
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhh---hhhh-cccccccccccccCcc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIID---IDKF-VRDMRHVSNNILMSPN 945 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~d---l~~~-v~~l~~t~~~ll~~~~ 945 (1858)
.+.++.|+|+||.|+-+.+..++....+ +..++.||......... +..+ .++++.||..+.+...
T Consensus 419 qvlvlaPtr~La~Q~~~~l~~~~~~~gi-----------~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~ 487 (780)
T 1gm5_A 419 QTAFMVPTSILAIQHYRRTVESFSKFNI-----------HVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVH 487 (780)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTCSSC-----------CEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCC
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhhhcCc-----------eEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhh
Confidence 3578999999999999888777654443 44677888765544333 3344 7889999987754322
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
.....-+|+||+++ + |+... .++.......+.+++
T Consensus 488 ---~~~l~lVVIDEaHr----~---------g~~qr------~~l~~~~~~~~vL~m----------------------- 522 (780)
T 1gm5_A 488 ---FKNLGLVIIDEQHR----F---------GVKQR------EALMNKGKMVDTLVM----------------------- 522 (780)
T ss_dssp ---CSCCCEEEEESCCC----C--------------------CCCCSSSSCCCEEEE-----------------------
T ss_pred ---ccCCceEEecccch----h---------hHHHH------HHHHHhCCCCCEEEE-----------------------
Confidence 23446688999988 2 22211 000000011223333
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHH-HHHHHhhc-CCcEEEEecCh--------HHH
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKI-VNLLSFLE-GKRSLIFVKTY--------RDA 1095 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl-~~Ll~lL~-~~k~IIFvnTk--------~~a 1095 (1858)
|||+++....++...-.+...+.-.+.....+...+......+++ ..+.+.+. +.+++|||++. +.+
T Consensus 523 ---SATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a 599 (780)
T 1gm5_A 523 ---SATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSA 599 (780)
T ss_dssp ---ESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHH
T ss_pred ---eCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHH
Confidence 899876655544322122222222122223344443333332222 22333333 37899999865 458
Q ss_pred HHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCC-Chhhhhh
Q psy15269 1096 SRIISAVQD---SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPL-SINHYVF 1171 (1858)
Q Consensus 1096 d~L~~~L~~---~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~-~~e~YIH 1171 (1858)
+.+++.|++ .++.+..+||+|+ +.+|.+++++|++|+++|||||+++++|+|+|++++||+||.|. ....|.|
T Consensus 600 ~~l~~~L~~~~~~~~~v~~lHG~m~---~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Q 676 (780)
T 1gm5_A 600 VEMYEYLSKEVFPEFKLGLMHGRLS---QEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQ 676 (780)
T ss_dssp HHHHHSGGGSCC---CBCCCCSSSC---CSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHH
T ss_pred HHHHHHHHhhhcCCCcEEEEeCCCC---HHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHH
Confidence 899999988 5789999999999 99999999999999999999999999999999999999999997 4666777
Q ss_pred hc---cC---cceEEEEecC
Q psy15269 1172 QI---AG---HKEAIAFYDP 1185 (1858)
Q Consensus 1172 RI---ag---~~~aitfvt~ 1185 (1858)
|+ |+ .+.++.++++
T Consensus 677 r~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 677 LRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp HHHTSCCSSTTCEEECCCCS
T ss_pred HhcccCcCCCCCEEEEEECC
Confidence 77 22 2378888875
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=99.56 E-value=9.3e-15 Score=191.20 Aligned_cols=254 Identities=11% Similarity=0.004 Sum_probs=172.6
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.++-|.|+||.++-+.+..+. ...+ +-..+.|+.....+ .+ ...++++.||..+.. ..+..
T Consensus 70 ~~l~i~P~r~La~q~~~~~~~~~-~~g~-----------~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~l~~~~~ 134 (702)
T 2p6r_A 70 KSLYVVPLRALAGEKYESFKKWE-KIGL-----------RIGISTGDYESRDE--HL-GDCDIIVTTSEKADSLIRNRAS 134 (702)
T ss_dssp CEEEEESSHHHHHHHHHHHTTTT-TTTC-----------CEEEECSSCBCCSS--CS-TTCSEEEEEHHHHHHHHHTTCS
T ss_pred cEEEEeCcHHHHHHHHHHHHHHH-hcCC-----------EEEEEeCCCCcchh--hc-cCCCEEEECHHHHHHHHHcChh
Confidence 45889999999999988875322 1122 22344565443221 11 256788999988774 22222
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHH---HHHhhhccCCCCccccccccccccccc
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFR---AELLSAVSNAPSFDDNNVSMGVTSTQH 1024 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~R---QtLLf~~~~~~s~~~~~~s~~~~~~~~ 1024 (1858)
......-+|+|||.+ +.+.++... ++.|+..+.+.+ +.++.
T Consensus 135 ~l~~~~~vIiDE~H~----------l~~~~r~~~----~~~ll~~l~~~~~~~~ii~l---------------------- 178 (702)
T 2p6r_A 135 WIKAVSCLVVDEIHL----------LDSEKRGAT----LEILVTKMRRMNKALRVIGL---------------------- 178 (702)
T ss_dssp GGGGCCEEEETTGGG----------GGCTTTHHH----HHHHHHHHHHHCTTCEEEEE----------------------
T ss_pred HHhhcCEEEEeeeee----------cCCCCcccH----HHHHHHHHHhcCcCceEEEE----------------------
Confidence 244566677898877 666666666 777777765432 22333
Q ss_pred ccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEE------ECCh-------hhHHHHHHHhhcC-CcEEEEec
Q psy15269 1025 NSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLI------RTPK-------SQKIVNLLSFLEG-KRSLIFVK 1090 (1858)
Q Consensus 1025 ~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~------~v~~-------~~Kl~~Ll~lL~~-~k~IIFvn 1090 (1858)
|||+|. .+++++.+ ..++ +..... ...+...+. .... ..+...+.+.+.. +++||||+
T Consensus 179 ----SATl~n-~~~~~~~l-~~~~-~~~~~r-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~ 250 (702)
T 2p6r_A 179 ----SATAPN-VTEIAEWL-DADY-YVSDWR-PVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFES 250 (702)
T ss_dssp ----ECCCTT-HHHHHHHT-TCEE-EECCCC-SSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHHTTCCEEEECS
T ss_pred ----CCCcCC-HHHHHHHh-CCCc-ccCCCC-CccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHhcCCCEEEEcC
Confidence 899885 56676644 3222 111111 111222111 1111 1155666666654 89999999
Q ss_pred ChHHHHHHHHHHhhC------------------------------CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEE
Q psy15269 1091 TYRDASRIISAVQDS------------------------------NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVI 1140 (1858)
Q Consensus 1091 Tk~~ad~L~~~L~~~------------------------------g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILV 1140 (1858)
+++.++.+++.|.+. +..+..+||+|+ +.+|..+++.|++|+.+|||
T Consensus 251 s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~---~~~R~~v~~~f~~g~~~vlv 327 (702)
T 2p6r_A 251 TRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLL---NGQRRVVEDAFRRGNIKVVV 327 (702)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSC---HHHHHHHHHHHHTTSCCEEE
T ss_pred CHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCC---HHHHHHHHHHHHCCCCeEEE
Confidence 999999999998752 235778999999 99999999999999999999
Q ss_pred eccccccCCCCCCcceEEE----cC---CCCChhhhhhhc--cCc------ceEEEEecC
Q psy15269 1141 MTLSDFIGNDFTNVEQVII----YN---LPLSINHYVFQI--AGH------KEAIAFYDP 1185 (1858)
Q Consensus 1141 ATDVAARGLDIp~V~~VIN----yD---lP~~~e~YIHRI--ag~------~~aitfvt~ 1185 (1858)
||+++++|+|+|++++||+ || .|.+..+|+||+ ||+ |.++.++++
T Consensus 328 aT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 387 (702)
T 2p6r_A 328 ATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGK 387 (702)
T ss_dssp ECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCG
T ss_pred ECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecC
Confidence 9999999999999999999 77 799999999999 222 368888886
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-15 Score=184.89 Aligned_cols=84 Identities=13% Similarity=0.165 Sum_probs=78.2
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcce-----
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQ----- 1156 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~----- 1156 (1858)
.+++||||+|++.++.+++.|++.++.+..+||++ |.+++++|++|+.+||||||++++|+|+| +.+
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~-------r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g 242 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKT-------FESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPR 242 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTT-------HHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCcc-------HHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecC
Confidence 37899999999999999999999999999999963 56789999999999999999999999999 655
Q ss_pred ------------EEEcCCCCChhhhhhhc
Q psy15269 1157 ------------VIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1157 ------------VINyDlP~~~e~YIHRI 1173 (1858)
|||||.|.+.++|+||+
T Consensus 243 ~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~ 271 (431)
T 2v6i_A 243 KTIKPILLDGRVSMQGPIAITPASAAQRR 271 (431)
T ss_dssp EEEEEEEETTEEEEEEEEECCHHHHHHHH
T ss_pred ccccceecccceeecccccCCHHHHHHhh
Confidence 68999999999999999
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-14 Score=180.89 Aligned_cols=241 Identities=12% Similarity=0.042 Sum_probs=162.5
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCcccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPNYESD 949 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~~~~~ 949 (1858)
.+.++-|+++|+.|.-+.+..+...++. +...+.||.....+ +....++++.|+..+..... ...
T Consensus 159 ~vlvl~P~~~L~~Q~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~~~-~~~ 223 (510)
T 2oca_A 159 KILIIVPTTALTTQMADDFVDYRLFSHA-----------MIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQPK-EWF 223 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTSSCGG-----------GEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTSCG-GGG
T ss_pred eEEEEECcHHHHHHHHHHHHHhhcCCcc-----------ceEEEecCCccccc---cccCCcEEEEeHHHHhhchh-hhh
Confidence 4689999999999998888766433322 33456677554433 34467788999997775422 333
Q ss_pred ccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCCC
Q psy15269 950 VNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDS 1029 (1858)
Q Consensus 950 ~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eS 1029 (1858)
....-+|+||+.+ +.. ++ ++.|++.+++.++.+.+ |
T Consensus 224 ~~~~liIiDE~H~----------~~~----~~----~~~il~~~~~~~~~l~l--------------------------S 259 (510)
T 2oca_A 224 SQFGMMMNDECHL----------ATG----KS----ISSIISGLNNCMFKFGL--------------------------S 259 (510)
T ss_dssp GGEEEEEEETGGG----------CCH----HH----HHHHGGGCTTCCEEEEE--------------------------E
T ss_pred hcCCEEEEECCcC----------CCc----cc----HHHHHHhcccCcEEEEE--------------------------E
Confidence 4456677999988 221 23 55665555444455555 7
Q ss_pred CCCcHhHHH-HHHHhcCCCEEEEEccCCc--------ccEEEEEEECCh---------------------hhHHHHHHHh
Q psy15269 1030 LFSWGDIEE-ESNIEVEDPIMKLVKPSSV--------HLVKQYLIRTPK---------------------SQKIVNLLSF 1079 (1858)
Q Consensus 1030 AT~p~~I~~-la~~~L~dpv~I~v~~~~~--------~~I~Q~~~~v~~---------------------~~Kl~~Ll~l 1079 (1858)
||++....+ +....+.+|..+.+..... ..+....+..+. ..|...+.++
T Consensus 260 ATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (510)
T 2oca_A 260 GSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKL 339 (510)
T ss_dssp SCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHH
T ss_pred eCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHH
Confidence 777665433 2222233444333222110 011222222211 1222333333
Q ss_pred hc------CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEec-cccccCCCCC
Q psy15269 1080 LE------GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMT-LSDFIGNDFT 1152 (1858)
Q Consensus 1080 L~------~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVAT-DVAARGLDIp 1152 (1858)
+. ..++|||++ .+.++.+++.|.+.+..+..+||+++ +.+|.+++++|++|+.+||||| +++++|+|+|
T Consensus 340 l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~---~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip 415 (510)
T 2oca_A 340 AIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVD---TETRNIMKTLAENGKGIIIVASYGVFSTGISVK 415 (510)
T ss_dssp HHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTT---HHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCC
T ss_pred HHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCC---HHHHHHHHHHHhCCCCCEEEEEcChhhcccccc
Confidence 32 245677776 78889999999999889999999999 9999999999999999999999 9999999999
Q ss_pred CcceEEEcCCCCChhhhhhhc
Q psy15269 1153 NVEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1153 ~V~~VINyDlP~~~e~YIHRI 1173 (1858)
++++||+||.|.++..|+||+
T Consensus 416 ~v~~vi~~~~~~s~~~~~Q~~ 436 (510)
T 2oca_A 416 NLHHVVLAHGVKSKIIVLQTI 436 (510)
T ss_dssp SEEEEEESSCCCSCCHHHHHH
T ss_pred cCcEEEEeCCCCCHHHHHHHH
Confidence 999999999999999999998
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-13 Score=159.57 Aligned_cols=115 Identities=13% Similarity=0.145 Sum_probs=95.9
Q ss_pred ChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHHhcC-CCc-EE
Q psy15269 1068 PKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDS-NMMTIPMSNNGTSWSHVECLELLNLFNTG-KSS-LV 1139 (1858)
Q Consensus 1068 ~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~-g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G-~~~-IL 1139 (1858)
....|+..|.+++. +.|+||||+++..++.+...|.+. |+++..+||+++ +.+|.+++++|+++ +++ +|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~---~~~R~~~i~~F~~~~~~~v~L 169 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELS---KKERDDIISKFQNNPSVKFIV 169 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSC---HHHHHHHHHHHHHCTTCCEEE
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCC---HHHHHHHHHHhcCCCCCCEEE
Confidence 45667777776663 489999999999999999999985 999999999999 99999999999998 777 79
Q ss_pred EeccccccCCCCCCcceEEEcCCCCChhhhhhhc------cCcc--eEEEEecC
Q psy15269 1140 IMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI------AGHK--EAIAFYDP 1185 (1858)
Q Consensus 1140 VATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI------ag~~--~aitfvt~ 1185 (1858)
++|+++++|||++.+++|||||+|+++..|+||+ |.++ ..+.|++.
T Consensus 170 ~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 170 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp EECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEET
T ss_pred EehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeC
Confidence 9999999999999999999999999999999998 2222 45777775
|
| >2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.9e-13 Score=147.71 Aligned_cols=144 Identities=14% Similarity=0.193 Sum_probs=106.8
Q ss_pred eeeEecCCCceE-EEEecCCeEEEecCC------------CCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeec
Q psy15269 1410 DSVSFDKEKCVC-CTVECGGQSLIHGPG------------TRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWP 1476 (1858)
Q Consensus 1410 ~~f~~D~~~~~~-~~~~~~~~~~~~~~~------------~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~ 1476 (1858)
-++++||+++++ +++++|+.+|+++.. ....+||.++|++|.||||+++. +...-.||||+..
T Consensus 9 ~~vtLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~----~~~~w~vGV~~~s 84 (188)
T 2vok_A 9 VHITLDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKMYWEVDVT----QKEAWDLGVCRDS 84 (188)
T ss_dssp CCCCBCGGGSCTTEEECTTSCEEEECSSCCCCCCCTTSCCSSSEEEBSCCBSSSEEEEEEECT----TCSCEEEEEEETT
T ss_pred cceEECCccCCCCeEECCCCCEEEECCccCCCCCCccceeeeccccccCcccCCCeEEEEEec----CCceEEEEEeeCC
Confidence 348999999999 999999999998763 24579999999999999999874 2334789999999
Q ss_pred cc---cCCCCCCCceeEEEeCCce--eeeCCCCCccCCCcCCCCEEEEEEeccCceEEEEeCCc--cccccccCCCCCCc
Q psy15269 1477 IR---DYNHRTTGDMWLYRAYSGN--VYHSGEQTTMLPSFTQGDYITVVLDMDAQTLSFGKNGE--EPHLAFQDLDTSAP 1549 (1858)
Q Consensus 1477 ~~---~~~~~~~~~~W~y~~~~g~--~~h~~~~~~~~~~~~~gd~i~v~lDm~~~tl~f~~ng~--~~GvAF~~l~~~~~ 1549 (1858)
+. ...++.++.+|...-.++. .+|+... ..+--..+.+|||.||+++|+||||--.. .+=-.|....=.++
T Consensus 85 i~Rkg~~~~~~~~~~W~l~~~~~~y~~~~~~~~--~l~~~~~~~rVGVfLDye~G~lSFY~v~~~~~~I~tF~~~~Fs~p 162 (188)
T 2vok_A 85 VQRKGQFSLSPENGFWTIWLWQDSYEAGTSPQT--TLHIQVPPCQIGIFVDYEAGVVSFYNITDHGSLIYTFSECVFAGP 162 (188)
T ss_dssp CCCSSCCCCSTTTTEEEEEEETTEEEECSSSCE--EECCSSCCSEEEEEEETTTTEEEEEETTTTTEEEEEECSCCCCSC
T ss_pred cCCCCccccCCCCCEEEEEEECCEEEEEeCCcc--CEecCCCCCEEEEEEEcCCCEEEEEECCCCCeeeEEecCCCCCCC
Confidence 88 2356788999955555554 2355332 12223468999999999999999995433 23356666333447
Q ss_pred eeEEEEEeec
Q psy15269 1550 LYPIVLFYST 1559 (1858)
Q Consensus 1550 lyP~Vs~y~~ 1559 (1858)
|||+++++..
T Consensus 163 L~P~F~~~~~ 172 (188)
T 2vok_A 163 LRPFFNVGFN 172 (188)
T ss_dssp EEEEEECCCC
T ss_pred EEeEEEeccc
Confidence 9999998754
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.7e-13 Score=179.21 Aligned_cols=104 Identities=11% Similarity=0.220 Sum_probs=96.8
Q ss_pred CChhhHHHHHHHhhc---CCcEEEEecChHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHHhcCC--CcEEE
Q psy15269 1067 TPKSQKIVNLLSFLE---GKRSLIFVKTYRDASRIISAVQD-SNMMTIPMSNNGTSWSHVECLELLNLFNTGK--SSLVI 1140 (1858)
Q Consensus 1067 v~~~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~~-~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~--~~ILV 1140 (1858)
+....|...|.++++ ..++||||++++.++.+++.|++ .|+++..+||+|+ +.+|.+++++|++|+ ++|||
T Consensus 485 ~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~---~~~R~~~l~~F~~g~~~~~vLv 561 (968)
T 3dmq_A 485 WNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS---IIERDRAAAWFAEEDTGAQVLL 561 (968)
T ss_dssp TTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSC---TTHHHHHHHHHHSTTSSCEEEE
T ss_pred cCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCC---HHHHHHHHHHHhCCCCcccEEE
Confidence 345678888887774 48999999999999999999995 6999999999999 999999999999998 99999
Q ss_pred eccccccCCCCCCcceEEEcCCCCChhhhhhhc
Q psy15269 1141 MTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1141 ATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI 1173 (1858)
||+++++|||+|++++|||||+|+++..|+||+
T Consensus 562 aT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~ 594 (968)
T 3dmq_A 562 CSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRI 594 (968)
T ss_dssp CSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHH
T ss_pred ecchhhcCCCcccCcEEEEecCCCCHHHHHHHh
Confidence 999999999999999999999999999999998
|
| >2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=145.21 Aligned_cols=142 Identities=14% Similarity=0.115 Sum_probs=103.6
Q ss_pred eeEecCCCceE-EEEecCCeEEEecCC------------CCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeecc
Q psy15269 1411 SVSFDKEKCVC-CTVECGGQSLIHGPG------------TRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPI 1477 (1858)
Q Consensus 1411 ~f~~D~~~~~~-~~~~~~~~~~~~~~~------------~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~ 1477 (1858)
+|++||+++|. +++++|+.+|++... ....+||.++|++|.||||+++. +...-.||||+..+
T Consensus 14 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrHYWEVev~----~~~~w~vGV~~~s~ 89 (191)
T 2wl1_A 14 NVILDAETAYPNLIFSDDLKSVRLGNKWERLPDGPQRFDSCIIVLGSPSFLSGRRYWEVEVG----DKTAWILGACKTSI 89 (191)
T ss_dssp CCEECTTTSCTTEEECTTSCEEEECCTTCCCCCCTTSCSSSCCEEEECCBCSSEEEEEEECT----TCSCEEEEEEETTC
T ss_pred eeEECCccCCCceEECCCCcEEEECCcCCCCCCCcccccccccccCcccccCCCEEEEEEeC----CCCEEEEEEeeCCc
Confidence 48999999999 999999999998763 23479999999999999999874 23347899999998
Q ss_pred cc---CCCCCCCceeEEEeCCc--e-eeeCCCCCccCCCcCCCCEEEEEEeccCceEEEEeCCc-cccccccCCCCCCce
Q psy15269 1478 RD---YNHRTTGDMWLYRAYSG--N-VYHSGEQTTMLPSFTQGDYITVVLDMDAQTLSFGKNGE-EPHLAFQDLDTSAPL 1550 (1858)
Q Consensus 1478 ~~---~~~~~~~~~W~y~~~~g--~-~~h~~~~~~~~~~~~~gd~i~v~lDm~~~tl~f~~ng~-~~GvAF~~l~~~~~l 1550 (1858)
.. ..++.+...|...-.++ . .+|+... ..+.-..+.+|||.||+++|+|||+--.. .+=-.|....=.++|
T Consensus 90 ~Rkg~~~~~~~~~~W~l~~~~~~~y~~~~~~~~--~l~~~~~~~rVGVfLDye~G~lSFY~v~~~~~i~tF~~~~Fs~pl 167 (191)
T 2wl1_A 90 SRKGNMTLSPENGYWVVIMMKENEYQASSVPPT--RLLIKEPPKRVGIFVDYRVGSISFYNVTARSHIYTFASCSFSGPL 167 (191)
T ss_dssp CSSSCCCCCGGGTEEEEEEEETTEEEECCSSCE--ECCCSSCCSEEEEEEETTTTEEEEEETTTTEEEEEECCCCCCSCE
T ss_pred CCCCccccCCCCCEEEEEEeCCCEEEEEcCCCc--cCccccCCcEEEEEEEcCCCEEEEEECCCCcceEEeCCCCCCCCE
Confidence 82 24667888995433322 2 2354332 12223468999999999999999994322 233667764344579
Q ss_pred eEEEEEee
Q psy15269 1551 YPIVLFYS 1558 (1858)
Q Consensus 1551 yP~Vs~y~ 1558 (1858)
||++++..
T Consensus 168 ~P~F~~~~ 175 (191)
T 2wl1_A 168 QPIFSPGT 175 (191)
T ss_dssp EEEEECCC
T ss_pred EeEEEccc
Confidence 99999864
|
| >2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-12 Score=144.76 Aligned_cols=143 Identities=15% Similarity=0.153 Sum_probs=104.4
Q ss_pred eeEecCCCceE-EEEecCCeEEEecCC------------CCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeecc
Q psy15269 1411 SVSFDKEKCVC-CTVECGGQSLIHGPG------------TRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPI 1477 (1858)
Q Consensus 1411 ~f~~D~~~~~~-~~~~~~~~~~~~~~~------------~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~ 1477 (1858)
+|++||+++|. +++++|+.+|++... ....+||.++|++|.||||+++. +...-.||||+..+
T Consensus 11 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~----~~~~w~vGV~~~si 86 (201)
T 2fbe_A 11 DMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVG----TSQVWDVGVCKESV 86 (201)
T ss_dssp CCCEETTTCCTTEEECTTSSEEEECSSCCCCCCCTTSCSSSCEEEESCCBSSSEEEEEEECT----TCSEEEEEEEETTS
T ss_pred eEEECcccCCCceEECCCCcEEEECCccCCCCCCccceeeccceecCccccCCceEEEEEeC----CCCEEEEEEeeCcc
Confidence 58999999999 999999999998763 24579999999999999999873 23347899999998
Q ss_pred ccC---CCCCCCceeEEEeCCceee--eCCCCCccCCCcCCCCEEEEEEeccCceEEEEeCCc-cccccccCCCCCCcee
Q psy15269 1478 RDY---NHRTTGDMWLYRAYSGNVY--HSGEQTTMLPSFTQGDYITVVLDMDAQTLSFGKNGE-EPHLAFQDLDTSAPLY 1551 (1858)
Q Consensus 1478 ~~~---~~~~~~~~W~y~~~~g~~~--h~~~~~~~~~~~~~gd~i~v~lDm~~~tl~f~~ng~-~~GvAF~~l~~~~~ly 1551 (1858)
..+ .++.+...|...-.++.-| +.+.. ...+.-..+.+|||.||+++|+|||+-... .+=-.|....=.++||
T Consensus 87 ~Rkg~~~~~~~~g~W~l~~~~~~~y~~~~~~~-~~l~~~~~~~rVGVfLDye~G~lSFY~v~~~~~i~tF~~~~Fs~pL~ 165 (201)
T 2fbe_A 87 NRQGKIELSSEHGFLTVGCREGKVFAASTVPM-TPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYTFIEIPVCEPWR 165 (201)
T ss_dssp CCSSCCCCCTTTTEEEEEEETTTEEEECSSSC-EEECCCTTCCEEEEEEETTTTEEEEEETTTTEEEEEECSCCCSSCEE
T ss_pred CCCCcccccCCCCEEEEEEeCCCEEEEEcCCc-ccCccCCCCCEEEEEEEcCCCEEEEEeCCCCceeEEEcCCCCCCCEE
Confidence 822 3457788995444433322 32222 223334568999999999999999985432 2236777643344799
Q ss_pred EEEEEee
Q psy15269 1552 PIVLFYS 1558 (1858)
Q Consensus 1552 P~Vs~y~ 1558 (1858)
|+++++.
T Consensus 166 P~F~~~~ 172 (201)
T 2fbe_A 166 PFFAHKR 172 (201)
T ss_dssp EEEEEEC
T ss_pred eEEEecc
Confidence 9999863
|
| >3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.7e-13 Score=145.64 Aligned_cols=141 Identities=18% Similarity=0.217 Sum_probs=104.1
Q ss_pred eeEecCCCceEEEEecCCeEEEecCCCCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeeccc--------cCCC
Q psy15269 1411 SVSFDKEKCVCCTVECGGQSLIHGPGTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR--------DYNH 1482 (1858)
Q Consensus 1411 ~f~~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~~--------~~~~ 1482 (1858)
+++.||+++|.+++++|+..|+... ...+||.++|++|.||||+++. +...-.||||+..+. +..+
T Consensus 13 ~vTLDp~TA~~l~lSed~r~Vr~~~--~~~VLG~~~ftsGrHYWEVeV~----~~~~W~vGV~~~~~~r~~~~~~~~~~~ 86 (186)
T 3uv9_A 13 DVTLATNNISHAVIAEDKRQVSSRA--GTGVLGSQSITSGKHYWEVDVS----KKSAWILGVCAGFQSDAMYNIEQNENY 86 (186)
T ss_dssp CCCCCCCSSCCCEECTTSSCEECCC--SSCEECSSCBCSSEEEEEEECT----TCSCEEEEEESCSTTTTTTTHHHHTCC
T ss_pred EeEeCCCCcCCceECCCCCEEeecC--CCcCcCCCCCCCCCEEEEEEEc----CCCcEEEEEEEEEecccccccCCCccc
Confidence 3699999999988999999997654 4679999999999999999863 223367999976554 3467
Q ss_pred CCCCceeEEEeCCce---eeeCCCC-CccCC------CcCCCCEEEEEEeccCceEEEE-e-CCccccccccCCCCCCce
Q psy15269 1483 RTTGDMWLYRAYSGN---VYHSGEQ-TTMLP------SFTQGDYITVVLDMDAQTLSFG-K-NGEEPHLAFQDLDTSAPL 1550 (1858)
Q Consensus 1483 ~~~~~~W~y~~~~g~---~~h~~~~-~~~~~------~~~~gd~i~v~lDm~~~tl~f~-~-ng~~~GvAF~~l~~~~~l 1550 (1858)
+.++..|...-.+|. ++|++.. ....| -...+.+|||.||+++|+|+|| + |...+--.|.+..=.++|
T Consensus 87 ~~~~g~W~l~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~p~rVGVfLDye~G~lSFYnv~d~~~lI~tF~~~~Fs~pL 166 (186)
T 3uv9_A 87 QPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEACTVSFFNITNHGFLIYKFSQCSFSKPV 166 (186)
T ss_dssp CGGGTEEEEEEETTTEEEEEECCCTTSTTSCEEEECCCSSCCSEEEEEEETTTTEEEEEETTTTTEEEEEECSCCCSSCB
T ss_pred CCCCCEEEEEECCCCEEEEEeCCCccccCCCccCcccccccCCEEEEEeecCCCEEEEEeCCCCceEEEEeCCcCCCCCE
Confidence 788899955445554 4577775 33333 3456899999999999999998 2 222344567665444579
Q ss_pred eEEEEEe
Q psy15269 1551 YPIVLFY 1557 (1858)
Q Consensus 1551 yP~Vs~y 1557 (1858)
||++++.
T Consensus 167 ~P~F~~~ 173 (186)
T 3uv9_A 167 FPYLNPR 173 (186)
T ss_dssp EEEEECT
T ss_pred EeEEECC
Confidence 9999984
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.1e-13 Score=173.16 Aligned_cols=87 Identities=13% Similarity=0.150 Sum_probs=80.3
Q ss_pred CcEEEEecChHHHHHHHHHHhhCCCe--------EEEEecCCCCccHHHHHHHHHHHhcCCCc---EEEeccccccCCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSNMM--------TIPMSNNGTSWSHVECLELLNLFNTGKSS---LVIMTLSDFIGNDF 1151 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g~~--------~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~---ILVATDVAARGLDI 1151 (1858)
.|+||||++++.|+.+++.|++.+.. +..+||+++ ++|.+++++|++|+.+ |||+||++++|+|+
T Consensus 440 ~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~----~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi 515 (590)
T 3h1t_A 440 AKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG----KIGKGHLSRFQELETSTPVILTTSQLLTTGVDA 515 (590)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH----HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC
T ss_pred ccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh----HHHHHHHHHHhCCCCCCCEEEEECChhhcCccc
Confidence 78999999999999999999875443 788999985 4899999999998877 89999999999999
Q ss_pred CCcceEEEcCCCCChhhhhhhc
Q psy15269 1152 TNVEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1152 p~V~~VINyDlP~~~e~YIHRI 1173 (1858)
|+|++||+|+.|.++..|+||+
T Consensus 516 p~v~~Vi~~~~~~s~~~~~Q~i 537 (590)
T 3h1t_A 516 PTCKNVVLARVVNSMSEFKQIV 537 (590)
T ss_dssp TTEEEEEEESCCCCHHHHHHHH
T ss_pred hheeEEEEEecCCChHHHHHHH
Confidence 9999999999999999999999
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-14 Score=178.62 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=93.7
Q ss_pred hhhHHHHHHHhhc---CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccc
Q psy15269 1069 KSQKIVNLLSFLE---GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSD 1145 (1858)
Q Consensus 1069 ~~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVA 1145 (1858)
...|...|.++++ ..++||||++++.++.+++.|. +..+||+++ +.+|.+++++|++|+++|||||+++
T Consensus 333 ~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~---~~~R~~~~~~F~~g~~~vLv~T~~~ 404 (472)
T 2fwr_A 333 SKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTS---REEREEILEGFRTGRFRAIVSSQVL 404 (472)
T ss_dssp CSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSC---SHHHHTHHHHHHHSSCSBCBCSSCC
T ss_pred ChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCC---HHHHHHHHHHHhCCCCCEEEEcCch
Confidence 3456666666664 4899999999999999999984 557999999 9999999999999999999999999
Q ss_pred ccCCCCCCcceEEEcCCCCChhhhhhhc-----cCc--c--eEEEEecC
Q psy15269 1146 FIGNDFTNVEQVIIYNLPLSINHYVFQI-----AGH--K--EAIAFYDP 1185 (1858)
Q Consensus 1146 ARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag~--~--~aitfvt~ 1185 (1858)
++|+|+|++++||+||.|+++..|+||+ .|. + ..+.|++.
T Consensus 405 ~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 405 DEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred hcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 9999999999999999999999999998 111 2 56667764
|
| >3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=137.54 Aligned_cols=143 Identities=18% Similarity=0.255 Sum_probs=102.3
Q ss_pred eeeEecCCCceE-EEEecCCeEEEecCCC-------------CceEEecccccCceEEEEEEEEeecCCCcceEEEEEee
Q psy15269 1410 DSVSFDKEKCVC-CTVECGGQSLIHGPGT-------------RGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRW 1475 (1858)
Q Consensus 1410 ~~f~~D~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~ 1475 (1858)
.++++||+++|. +++++|+..|+++... ...+||.++|++|.||||+++. +...-.||||+.
T Consensus 12 ~~vtLDp~TA~~~L~lSed~~~v~~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrhYWEVev~----~~~~W~lGV~~~ 87 (193)
T 3kb5_A 12 EELTFDPSSAHPSLVVSSSGRRVECSEQKAPPAGEDPRQFDKAVAVVAHQQLSEGEHYWEVDVG----DKPRWALGVIAA 87 (193)
T ss_dssp CCCCBCTTTSCTTEEEETTTTEEEECCSCCCCCCSCTTSCSSSCEEEBSCCBCSSEEEEEEECT----TCSSEEEEEEET
T ss_pred ccEEECCCCCCCCEEECCCCCEEEECCcCCCCCCCCccccccccEEccCCcccCCCEEEEEEeC----cCceEEEEEeeC
Confidence 348999999999 9999999999987643 3569999999999999999864 233479999999
Q ss_pred ccc---cCCCCCCCceeEEEeCCce---eeeCCCCCccCCC-cCCCCEEEEEEeccCceEEEE-eCC---ccccccccCC
Q psy15269 1476 PIR---DYNHRTTGDMWLYRAYSGN---VYHSGEQTTMLPS-FTQGDYITVVLDMDAQTLSFG-KNG---EEPHLAFQDL 1544 (1858)
Q Consensus 1476 ~~~---~~~~~~~~~~W~y~~~~g~---~~h~~~~~~~~~~-~~~gd~i~v~lDm~~~tl~f~-~ng---~~~GvAF~~l 1544 (1858)
.+. ...+..++.+|.....+++ ++|++......+- -..+.+|||.||+++|+|||| ++. ..+=-.|..
T Consensus 88 s~~Rkg~~~~~~~~~~W~l~~~~~~~y~~~~~~~~~~~l~~~~~~~~rVGVfLDye~G~lSFY~v~~~~~~s~I~tF~~- 166 (193)
T 3kb5_A 88 EAPRRGRLHAVPSQGLWLLGLREGKILEAHVEAKEPRALRSPERRPTRIGLYLSFGDGVLSFYDASDADALVPLFAFHE- 166 (193)
T ss_dssp TSCCSSSCCCSGGGTEEEEEEETTTEEEECCSSSSCEECCCCSSCCSEEEEEEETTTTEEEEEECCSTTCCEEEEEECS-
T ss_pred CcCcCCCcCCCCCCCEEEEEEeCCCEEEEEeCCCccEEEeecCCCCCEEEEEEEcCCCEEEEEeCCCCCCceEEEEeCC-
Confidence 988 2234456779955444444 2344433211222 345789999999999999998 332 233345654
Q ss_pred CCCCceeEEEEEe
Q psy15269 1545 DTSAPLYPIVLFY 1557 (1858)
Q Consensus 1545 ~~~~~lyP~Vs~y 1557 (1858)
.=+++|||++++.
T Consensus 167 ~Ft~pl~P~F~~~ 179 (193)
T 3kb5_A 167 RLPRPVYPFFDVC 179 (193)
T ss_dssp CCCSCEEEEEECC
T ss_pred CCCCCeECEEEcc
Confidence 2344799999974
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.24 E-value=3.5e-11 Score=169.61 Aligned_cols=295 Identities=13% Similarity=0.020 Sum_probs=179.5
Q ss_pred cccccCccHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCC-CCCCCccchhhhcccccc
Q psy15269 833 IHRSMYPTLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLL-GPPEAHEETETVHWLKTS 911 (1858)
Q Consensus 833 ~~~~~~~~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~-~~pl~~~e~~~~~wL~s~ 911 (1858)
|...-+.+ -..++++.+|-+- ++..+..+.|+|+||.++=+.+...+. ... ++-.
T Consensus 950 PTGSGKTl-iaelail~~l~~~------------~~~kavyi~P~raLa~q~~~~~~~~f~~~~g-----------~~V~ 1005 (1724)
T 4f92_B 950 PTGSGKTI-CAEFAILRMLLQS------------SEGRCVYITPMEALAEQVYMDWYEKFQDRLN-----------KKVV 1005 (1724)
T ss_dssp CTTSCCHH-HHHHHHHHHHHHC------------TTCCEEEECSCHHHHHHHHHHHHHHHTTTSC-----------CCEE
T ss_pred CCCCCchH-HHHHHHHHHHHhC------------CCCEEEEEcChHHHHHHHHHHHHHHhchhcC-----------CEEE
Confidence 44444522 3445566666432 233468999999999998766543221 122 2334
Q ss_pred ccccccCCchhhhhhhhhccccccccccccc-Cc---cccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHH
Q psy15269 912 LLSAGLEPSTAIIDIDKFVRDMRHVSNNILM-SP---NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLE 987 (1858)
Q Consensus 912 ~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~-~~---~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~ 987 (1858)
.+.|+.. .+.. ..+..++++.||.++.. .. .........-+|+||+.. |.+. ..+ .++
T Consensus 1006 ~ltGd~~--~~~~-~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~----------l~d~-rg~----~le 1067 (1724)
T 4f92_B 1006 LLTGETS--TDLK-LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHL----------IGGE-NGP----VLE 1067 (1724)
T ss_dssp ECCSCHH--HHHH-HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGG----------GGST-THH----HHH
T ss_pred EEECCCC--cchh-hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhh----------cCCC-CCc----cHH
Confidence 4556543 1222 22356789999998642 22 223345677788999976 5442 223 366
Q ss_pred HHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEE-EEccC-CcccEEEEEE
Q psy15269 988 QIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMK-LVKPS-SVHLVKQYLI 1065 (1858)
Q Consensus 988 ~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I-~v~~~-~~~~I~Q~~~ 1065 (1858)
.++..+......+- .......-|||.|. .+++++..-.++..+ .+... ....+++++.
T Consensus 1068 ~il~rl~~i~~~~~-------------------~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~ 1127 (1724)
T 4f92_B 1068 VICSRMRYISSQIE-------------------RPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQ 1127 (1724)
T ss_dssp HHHHHHHHHHHTTS-------------------SCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEE
T ss_pred HHHHHHHHHHhhcC-------------------CCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEE
Confidence 66665543221110 00111122899874 567776654333222 22222 2223555554
Q ss_pred ECChhh---HHHH----HHH----hhcCCcEEEEecChHHHHHHHHHHhhC-----------------------------
Q psy15269 1066 RTPKSQ---KIVN----LLS----FLEGKRSLIFVKTYRDASRIISAVQDS----------------------------- 1105 (1858)
Q Consensus 1066 ~v~~~~---Kl~~----Ll~----lL~~~k~IIFvnTk~~ad~L~~~L~~~----------------------------- 1105 (1858)
..+... ++.. +.. .....++||||+||+.|+.++..|...
T Consensus 1128 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~ 1207 (1724)
T 4f92_B 1128 GFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDST 1207 (1724)
T ss_dssp EECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHH
T ss_pred eccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHH
Confidence 433221 1111 111 122378999999999999888766421
Q ss_pred -----CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEE----------EcCCCCChhhhh
Q psy15269 1106 -----NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVI----------IYNLPLSINHYV 1170 (1858)
Q Consensus 1106 -----g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VI----------NyDlP~~~e~YI 1170 (1858)
...+..+||+|+ +.+|..+.+.|++|.++|||||+.+|+|+|+|.+.+|| ++..|.++.+|+
T Consensus 1208 L~~~l~~GIa~hHagL~---~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~ 1284 (1724)
T 4f92_B 1208 LKETLLNGVGYLHEGLS---PMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVL 1284 (1724)
T ss_dssp HHHHHHTTEEEECTTSC---HHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHH
T ss_pred HHHHHhCCEEEECCCCC---HHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHH
Confidence 224788999999 99999999999999999999999999999999999999 344578899999
Q ss_pred hhc--cCc------ceEEEEecCcccHHHHH
Q psy15269 1171 FQI--AGH------KEAIAFYDPVADIGLAS 1193 (1858)
Q Consensus 1171 HRI--ag~------~~aitfvt~~~e~~~l~ 1193 (1858)
||+ ||+ |.++.++.+ .+..+++
T Consensus 1285 Qm~GRAGR~g~d~~G~avll~~~-~~~~~~~ 1314 (1724)
T 4f92_B 1285 QMVGHANRPLQDDEGRCVIMCQG-SKKDFFK 1314 (1724)
T ss_dssp HHHTTBCCTTTCSCEEEEEEEEG-GGHHHHH
T ss_pred HhhccccCCCCCCceEEEEEecc-hHHHHHH
Confidence 999 222 368888876 5555443
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-11 Score=171.09 Aligned_cols=273 Identities=13% Similarity=0.068 Sum_probs=171.2
Q ss_pred cCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cc
Q psy15269 867 TNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SP 944 (1858)
Q Consensus 867 ~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~ 944 (1858)
++..+..+.|.|+||.++=+.+...+....++. ..+.|+.....+. -+..++++.||..+-. ..
T Consensus 133 ~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V-----------~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~ 198 (1724)
T 4f92_B 133 DDFKIIYIAPMRSLVQEMVGSFGKRLATYGITV-----------AELTGDHQLCKEE---ISATQIIVCTPEKWDIITRK 198 (1724)
T ss_dssp TSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCE-----------EECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEE-----------EEEECCCCCCccc---cCCCCEEEECHHHHHHHHcC
Confidence 455678999999999999888777665555533 4457877654432 1356789999986421 11
Q ss_pred --cccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccc
Q psy15269 945 --NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTST 1022 (1858)
Q Consensus 945 --~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~ 1022 (1858)
+........-+|+||+- ++.+ . .+..++.++..+.+....+-. .
T Consensus 199 ~~~~~~l~~v~~vIiDEvH----------~l~d-~----RG~~lE~~l~rl~~~~~~~~~-------------------~ 244 (1724)
T 4f92_B 199 GGERTYTQLVRLIILDEIH----------LLHD-D----RGPVLEALVARAIRNIEMTQE-------------------D 244 (1724)
T ss_dssp STTHHHHTTEEEEEETTGG----------GGGS-T----THHHHHHHHHHHHHHHHHHTC-------------------C
T ss_pred CccchhhcCcCEEEEecch----------hcCC-c----cHHHHHHHHHHHHHHHHhCCC-------------------C
Confidence 11123456667788882 2322 1 123366666554332211110 0
Q ss_pred ccccCCCCCCcHhHHHHHHHhcCCCE-EE-EEccC-CcccEEEEEEECChhhH---HHH----HHHhh----cCCcEEEE
Q psy15269 1023 QHNSTDSLFSWGDIEEESNIEVEDPI-MK-LVKPS-SVHLVKQYLIRTPKSQK---IVN----LLSFL----EGKRSLIF 1088 (1858)
Q Consensus 1023 ~~~~~eSAT~p~~I~~la~~~L~dpv-~I-~v~~~-~~~~I~Q~~~~v~~~~K---l~~----Ll~lL----~~~k~IIF 1088 (1858)
.....-|||.|. .+++|+..-.++. .+ .+..+ ....+++.++.++.... ... +...+ ...++|||
T Consensus 245 ~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF 323 (1724)
T 4f92_B 245 VRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVF 323 (1724)
T ss_dssp CEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEE
T ss_pred CcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEE
Confidence 011122899874 5667754333321 11 12211 22346776665543221 111 22222 23789999
Q ss_pred ecChHHHHHHHHHHhhC-------------------------------------CCeEEEEecCCCCccHHHHHHHHHHH
Q psy15269 1089 VKTYRDASRIISAVQDS-------------------------------------NMMTIPMSNNGTSWSHVECLELLNLF 1131 (1858)
Q Consensus 1089 vnTk~~ad~L~~~L~~~-------------------------------------g~~~~~LHG~ms~~~Q~eR~~~L~~F 1131 (1858)
|+||+.|+.+++.|.+. ...+...||+|+ +.+|..+.+.|
T Consensus 324 ~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~---~~~R~~vE~~F 400 (1724)
T 4f92_B 324 VHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMT---RVDRTLVEDLF 400 (1724)
T ss_dssp CSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSC---THHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCC---HHHHHHHHHHH
Confidence 99999999988887531 123778899999 99999999999
Q ss_pred hcCCCcEEEeccccccCCCCCCcceEEE----cC------CCCChhhhhhhc--cCc------ceEEEEecCcccHHHH
Q psy15269 1132 NTGKSSLVIMTLSDFIGNDFTNVEQVII----YN------LPLSINHYVFQI--AGH------KEAIAFYDPVADIGLA 1192 (1858)
Q Consensus 1132 r~G~~~ILVATDVAARGLDIp~V~~VIN----yD------lP~~~e~YIHRI--ag~------~~aitfvt~~~e~~~l 1192 (1858)
++|.++|||||+.+|+|+|+|.+++||. || .|-++.+|+||+ ||+ |.++.+.++ ++...+
T Consensus 401 ~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~-~~~~~~ 478 (1724)
T 4f92_B 401 ADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSH-GELQYY 478 (1724)
T ss_dssp HTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEES-TTCCHH
T ss_pred HCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecc-hhHHHH
Confidence 9999999999999999999999999996 54 456889999999 333 256777766 444333
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.19 E-value=6.8e-11 Score=148.19 Aligned_cols=115 Identities=13% Similarity=0.145 Sum_probs=94.5
Q ss_pred ChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHHhcC-CCc-EE
Q psy15269 1068 PKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDS-NMMTIPMSNNGTSWSHVECLELLNLFNTG-KSS-LV 1139 (1858)
Q Consensus 1068 ~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~-g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G-~~~-IL 1139 (1858)
....|+..+.+++. +.|+||||+++..++.+.+.|++. |+.+..+||+++ +.+|.+++++|+++ ..+ +|
T Consensus 322 ~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~---~~~R~~~~~~F~~~~~~~vil 398 (500)
T 1z63_A 322 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELS---KKERDDIISKFQNNPSVKFIV 398 (500)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSC---HHHHHHHHHHHHHCTTCCCCE
T ss_pred hcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCC---HHHHHHHHHHhcCCCCCCEEE
Confidence 34566666666553 379999999999999999999985 999999999999 99999999999998 565 79
Q ss_pred EeccccccCCCCCCcceEEEcCCCCChhhhhhhc------cCcc--eEEEEecC
Q psy15269 1140 IMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI------AGHK--EAIAFYDP 1185 (1858)
Q Consensus 1140 VATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI------ag~~--~aitfvt~ 1185 (1858)
|+|+++++|+|++.+++||+||+|+++..|+||+ |.++ ..+.|++.
T Consensus 399 ~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~ 452 (500)
T 1z63_A 399 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 452 (500)
T ss_dssp EECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEET
T ss_pred EecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeC
Confidence 9999999999999999999999999999999988 2222 45667765
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.11 E-value=4.2e-10 Score=146.05 Aligned_cols=126 Identities=5% Similarity=0.087 Sum_probs=102.8
Q ss_pred HHHHHHhhc---CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCc---EEEeccccc
Q psy15269 1073 IVNLLSFLE---GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSS---LVIMTLSDF 1146 (1858)
Q Consensus 1073 l~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~---ILVATDVAA 1146 (1858)
+..++..+. +.|+|||++++..++.+.+.|+..|+.+..+||+++ +.+|.+++++|+++... +||+|++++
T Consensus 404 l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~---~~~R~~~i~~F~~~~~~~~v~L~st~a~g 480 (644)
T 1z3i_X 404 LDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMS---IKKRAKIVERFNNPSSPEFIFMLSSKAGG 480 (644)
T ss_dssp HHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCC---HHHHHHHHHHHHSTTCCCCEEEEEGGGSC
T ss_pred HHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCC---HHHHHHHHHHhcCCCCCcEEEEEeccccc
Confidence 444444442 479999999999999999999999999999999999 99999999999998764 899999999
Q ss_pred cCCCCCCcceEEEcCCCCChhhhhhhc------cCcc--eEEEEecCc-ccHHHHHHHHHHHhh
Q psy15269 1147 IGNDFTNVEQVIIYNLPLSINHYVFQI------AGHK--EAIAFYDPV-ADIGLASSLIKLLEY 1201 (1858)
Q Consensus 1147 RGLDIp~V~~VINyDlP~~~e~YIHRI------ag~~--~aitfvt~~-~e~~~l~~Ie~~l~~ 1201 (1858)
+|||++++++||+||+|+++..|.||+ |.++ ..+.|++.. -|..+++.+++...-
T Consensus 481 ~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l 544 (644)
T 1z3i_X 481 CGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKAL 544 (644)
T ss_dssp TTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHT
T ss_pred CCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987 2222 566777753 144455554444433
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.8e-10 Score=152.34 Aligned_cols=90 Identities=10% Similarity=0.054 Sum_probs=75.9
Q ss_pred CcEEEEecChHHHHHHHHHHhhCC------------CeE-EEEecC----------CC-------CccH-----------
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSN------------MMT-IPMSNN----------GT-------SWSH----------- 1121 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g------------~~~-~~LHG~----------ms-------~~~Q----------- 1121 (1858)
.++||||++++.|..+++.|++.+ +++ ..+||+ +. ++.+
T Consensus 538 ~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~ 617 (1038)
T 2w00_A 538 FNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIR 617 (1038)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHH
Confidence 579999999999999999998754 554 566753 21 0012
Q ss_pred ------------------HHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc
Q psy15269 1122 ------------------VECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1122 ------------------~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI 1173 (1858)
.+|..++++|++|+++|||+||++.||+|+|.+ +|+++|.|.....|+||+
T Consensus 618 dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaI 686 (1038)
T 2w00_A 618 EYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAF 686 (1038)
T ss_dssp HHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHH
T ss_pred HHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehh
Confidence 248899999999999999999999999999999 899999999999999998
|
| >4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-09 Score=137.47 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=98.7
Q ss_pred eEecCCCceEEEEecCCeEEEecCCCC--------------------ceEEecccccCceEEEEEEEEeecCCCcceEEE
Q psy15269 1412 VSFDKEKCVCCTVECGGQSLIHGPGTR--------------------GYGVANIGITRGCYQWKFLIVNEHKGNEGTCIG 1471 (1858)
Q Consensus 1412 f~~D~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vG 1471 (1858)
++.||+++|+.++|+|+..|+++.... -.+||..+|++|.||||+++. +...=.+|
T Consensus 412 vtldp~ta~~l~~s~d~r~v~~~~~~~~~~~p~~~~~~~~~~rF~~~~~VLg~~~f~sGrhyWEV~v~----~~~~w~~G 487 (602)
T 4b3n_A 412 VTLATNNISHAVIAEDKRQVSSRNPQIMYQAPGTLFTFPSLTNFNYCTGVLGSQSITSGKHYWEVDVS----KKSAWILG 487 (602)
T ss_dssp CCEECCSCCSCEECTTSSEEECCCC--------------------CCCCEEESSCBSSSEEEEEEECT----TCSCEEEE
T ss_pred EEeCCCCCCceeEecCCCEEEECCccccccCCCccCCCCCcccCCCCCEeccCCCCCCEEEEEEEEEC----CCeeEEEE
Confidence 799999999977899999999876321 249999999999999999862 23335688
Q ss_pred EEeeccc--------cCCCCCCCceeEEEeCCceee---eCCCC-CccCC------CcCCCCEEEEEEeccCceEEEEe-
Q psy15269 1472 VTRWPIR--------DYNHRTTGDMWLYRAYSGNVY---HSGEQ-TTMLP------SFTQGDYITVVLDMDAQTLSFGK- 1532 (1858)
Q Consensus 1472 va~~~~~--------~~~~~~~~~~W~y~~~~g~~~---h~~~~-~~~~~------~~~~gd~i~v~lDm~~~tl~f~~- 1532 (1858)
||+..+. ...++.+...|....++|+.| |++.. ....| --..+.+|||.||+++|+||||=
T Consensus 488 v~~~~~~~~~~~~~~~~~~~~~~g~w~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~rvgv~ld~~~g~~sFy~~ 567 (602)
T 4b3n_A 488 VCAGFQSDAMYNIEQNENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEACTVSFFNI 567 (602)
T ss_dssp EECCCCTTTSSTHHHHCCCCGGGTEEEEEEETTTEEEEEECCCSSCCSSCEEEECCCSSCCSEEEEEEETTTTEEEEEET
T ss_pred EeeccccccccccCCCcccCCCCcEEEEEEecCCeEEEEeCCCcccccCCcccccccCCCCCEEEEEEecCCCEEEEEeC
Confidence 8764332 334566778996665666543 77665 33333 23457899999999999999993
Q ss_pred CCc-cccccccCCCCCCceeEEEEE
Q psy15269 1533 NGE-EPHLAFQDLDTSAPLYPIVLF 1556 (1858)
Q Consensus 1533 ng~-~~GvAF~~l~~~~~lyP~Vs~ 1556 (1858)
.+. .+=-.|.+..=+++|||.+++
T Consensus 568 ~~~~~~i~tf~~~~f~~~l~P~f~~ 592 (602)
T 4b3n_A 568 TNHGFLIYKFSQCSFSKPVFPYLNP 592 (602)
T ss_dssp TTTTEEEEEECSCCCCSCBEEEEEC
T ss_pred CCCceeeEeCCCcCCCCCEeCeEEC
Confidence 221 121345544333469999987
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.9e-09 Score=141.42 Aligned_cols=127 Identities=14% Similarity=0.147 Sum_probs=103.4
Q ss_pred hHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCc---EEEec
Q psy15269 1071 QKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSS---LVIMT 1142 (1858)
Q Consensus 1071 ~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~---ILVAT 1142 (1858)
.|+..|.+++. +.|+|||++....++.|...|...|+++..+||+++ +.+|.+++++|+++... +|++|
T Consensus 556 ~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~---~~eR~~~i~~F~~~~~~~~v~LlSt 632 (800)
T 3mwy_W 556 GKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVP---SAQRRISIDHFNSPDSNDFVFLLST 632 (800)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSC---HHHHHHHHHTTSSTTCSCCCEEEEH
T ss_pred hHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCC---HHHHHHHHHHhhCCCCCceEEEEec
Confidence 45555555443 379999999999999999999999999999999999 99999999999986554 89999
Q ss_pred cccccCCCCCCcceEEEcCCCCChhhhhhhc------cCcc--eEEEEecCc-ccHHHHHHHHHHHh
Q psy15269 1143 LSDFIGNDFTNVEQVIIYNLPLSINHYVFQI------AGHK--EAIAFYDPV-ADIGLASSLIKLLE 1200 (1858)
Q Consensus 1143 DVAARGLDIp~V~~VINyDlP~~~e~YIHRI------ag~~--~aitfvt~~-~e~~~l~~Ie~~l~ 1200 (1858)
++++.|||++.+++||+||+|+++..++||+ |.++ ..+.|++.. -|..+++.+++.+.
T Consensus 633 ~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~ 699 (800)
T 3mwy_W 633 RAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMI 699 (800)
T ss_dssp HHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTT
T ss_pred ccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999877 3233 566677752 24555555555443
|
| >2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-07 Score=103.04 Aligned_cols=148 Identities=17% Similarity=0.218 Sum_probs=116.4
Q ss_pred eEecCCCceEEEEecCCeEEEec----CCCCceEEecccccCceEEEEEEEEeecCCCcc-eEEEEEeeccc--c---CC
Q psy15269 1412 VSFDKEKCVCCTVECGGQSLIHG----PGTRGYGVANIGITRGCYQWKFLIVNEHKGNEG-TCIGVTRWPIR--D---YN 1481 (1858)
Q Consensus 1412 f~~D~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~-~~vGva~~~~~--~---~~ 1481 (1858)
..|=+.++..+.++++++++.-. ++.++.+.-+.|+..|- .+.++|++...+-.| ..|||.+.+-. + ..
T Consensus 7 l~FH~~hG~nI~L~~~~~~A~R~~~~~~f~~givFS~rPl~~~E-~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~lP~~~ 85 (170)
T 2e63_A 7 GELHPRTGRLVSLSACGRTARRQQPGQEFNHGLVLSREPLRDGR-VFTVRIDRKVNSWSGSIEIGVTALDPSVLDFPSSA 85 (170)
T ss_dssp SCCCSCCCSSEEECSSSCEEEESCTTTCSCSCCEEEEEEECTTC-EEEEEEEEECCSSCCCCEEEEESSCTTSCCCCSSG
T ss_pred cccccccCCCeEECCCCeEEEeCCCCcccCceEEEECCCCCCCC-EEEEEEEeecCCcceeEEEEEEccChhhccCCCCh
Confidence 35667666669999999998886 89999999999999996 688888887665554 89999998554 1 11
Q ss_pred CCCCCceeEEEeCCceeeeCCCC--CccCC---CcCCCCEEEEEEeccCceEEEEeCCccccccccCCCCCCceeEEEEE
Q psy15269 1482 HRTTGDMWLYRAYSGNVYHSGEQ--TTMLP---SFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPIVLF 1556 (1858)
Q Consensus 1482 ~~~~~~~W~y~~~~g~~~h~~~~--~~~~~---~~~~gd~i~v~lDm~~~tl~f~~ng~~~GvAF~~l~~~~~lyP~Vs~ 1556 (1858)
..-.++.|++. .-..++|++. .+|+. ....||+|++.+| .+|.|.|++||+.+|+++.|++. +||..|-+
T Consensus 86 ~~L~~~~Wv~~--~~~v~~ng~~~~e~~~~~l~~l~~Gd~ig~~~~-~~G~l~~~iNg~~~g~~~~~ip~--~LwavvDv 160 (170)
T 2e63_A 86 TGLKGGSWVVS--GCSVLRDGRSVLEEYGQDLDQLGEGDRVGVERT-VAGELRLWVNGRDCGVAATGLPP--RVWAVVDL 160 (170)
T ss_dssp GGCCSSEEEES--SSEEEESSCEEEESCSSCGGGCCSSCCEEEEEC-TTSCEEEEESSCEEEEEECCCCS--CEEEEEEC
T ss_pred hhCCCCeEEEe--ccccccCCcccchhccccccccCCCCEEEEEEc-CCcEEEEEECCccceeeEcCCCC--cEEEEEEc
Confidence 22345789873 2456677765 55554 5679999999999 56999999999999999999974 69999999
Q ss_pred eecCCCCCeEEE
Q psy15269 1557 YSTNANGEKVKI 1568 (1858)
Q Consensus 1557 y~~~~~~~~v~~ 1568 (1858)
||++. .|+|
T Consensus 161 yG~t~---~V~i 169 (170)
T 2e63_A 161 YGKCT---QITV 169 (170)
T ss_dssp CTTEE---EEEE
T ss_pred cCCEE---EEEE
Confidence 98887 5554
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=98.68 E-value=3e-09 Score=120.95 Aligned_cols=158 Identities=13% Similarity=0.109 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|++..+.+..... ......+.++-|+|+||.|+-+.+..+.....+ +...+.||....
T Consensus 81 ~~~~l~~l~~l~~~~~~~------~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~-----------~~~~~~g~~~~~ 143 (242)
T 3fe2_A 81 LSYLLPAIVHINHQPFLE------RGDGPICLVLAPTRELAQQVQQVAAEYCRACRL-----------KSTCIYGGAPKG 143 (242)
T ss_dssp HHHHHHHHHHHHTSCCCC------TTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTC-----------CEEEECTTSCHH
T ss_pred HHHHHHHHHHHHhccccc------cCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCc-----------eEEEEECCCChH
Confidence 346677777765432211 023445789999999999998887766554433 556788999888
Q ss_pred hhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRA 998 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQ 998 (1858)
.+...+.++.++++.||+++++ ............+|+|||++ |.++||.++ ++.|++.+++.+|
T Consensus 144 ~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~----------l~~~~~~~~----~~~i~~~~~~~~q 209 (242)
T 3fe2_A 144 PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADR----------MLDMGFEPQ----IRKIVDQIRPDRQ 209 (242)
T ss_dssp HHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHH----------HHHTTCHHH----HHHHHTTSCSSCE
T ss_pred HHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHH----------HhhhCcHHH----HHHHHHhCCccce
Confidence 8888888899999999999986 22233444556677888877 889999999 9999999988889
Q ss_pred HHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccC
Q psy15269 999 ELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPS 1055 (1858)
Q Consensus 999 tLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~ 1055 (1858)
.+++ |||+|++++++++.++++|+.|.++.+
T Consensus 210 ~~~~--------------------------SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 210 TLMW--------------------------SATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp EEEE--------------------------ESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred EEEE--------------------------EeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999 999999999999999999999998754
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.8e-08 Score=113.45 Aligned_cols=169 Identities=14% Similarity=0.122 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHhhhccccccccc-cccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNY-TETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~-~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
+-+++|++..+.+-.... +.. ......+.++-|+|+||.|+-+.+..+....++ +...+.||...
T Consensus 75 ~~~~~~~l~~l~~~~~~~---~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-----------~~~~~~g~~~~ 140 (253)
T 1wrb_A 75 AAFLIPIINHLVCQDLNQ---QRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPL-----------RSCVVYGGADT 140 (253)
T ss_dssp HHHHHHHHHHHHTTCC---------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSC-----------CEEEECSSSCS
T ss_pred HHHHHHHHHHHHhhcccc---ccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCc-----------eEEEEECCCCH
Confidence 445666666665432110 000 012345789999999999998887776655444 34567899887
Q ss_pred chhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHH--hHH
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSV--VNK 995 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~--Lpk 995 (1858)
..+...+....++++.||.++++ ............+|+|||++ |.++||.++ ++.|++. +++
T Consensus 141 ~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~----------~~~~~~~~~----~~~i~~~~~~~~ 206 (253)
T 1wrb_A 141 HSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADR----------MLDMGFEPQ----IRKIIEESNMPS 206 (253)
T ss_dssp HHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHH----------HHHTTCHHH----HHHHHHSSCCCC
T ss_pred HHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHH----------HHhCchHHH----HHHHHhhccCCC
Confidence 77877777788999999999985 22223334455677888877 899999998 9998884 343
Q ss_pred --HHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc--ccEEEE
Q psy15269 996 --FRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV--HLVKQY 1063 (1858)
Q Consensus 996 --~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~--~~I~Q~ 1063 (1858)
.+|.+++ |||+|++++++++.++++|+.|.++.... .+|+|+
T Consensus 207 ~~~~q~l~~--------------------------SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 207 GINRQTLMF--------------------------SATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQE 252 (253)
T ss_dssp GGGCEEEEE--------------------------ESSCCHHHHHHHHHHCSSCEEEEEC------------
T ss_pred CCCcEEEEE--------------------------EEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCceec
Confidence 5677788 99999999999999999999998875533 346665
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.3e-08 Score=116.70 Aligned_cols=132 Identities=15% Similarity=0.001 Sum_probs=104.1
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccC---ccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMS---PNY 946 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~---~~~ 946 (1858)
.+.++.|+|+||.|+...+..+....+ .++.....||.....+. ....++++.||+++++. .+.
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~----------~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~ 230 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYP----------ELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKF 230 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTST----------TCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCC----------CcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCC
Confidence 578999999999999988887766432 12445666775543322 34567899999999862 234
Q ss_pred cccccccceeecccchhhhhhHHhhhhhh-cCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQ-TALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~-mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
........+|+|||++ |.+ .||..+ +..|++.+++.+|+++|
T Consensus 231 ~~l~~l~~lVlDEad~----------l~~~~~~~~~----~~~i~~~~~~~~q~i~~----------------------- 273 (300)
T 3fmo_B 231 IDPKKIKVFVLDEADV----------MIATQGHQDQ----SIRIQRMLPRNCQMLLF----------------------- 273 (300)
T ss_dssp CCGGGCSEEEETTHHH----------HHHSTTHHHH----HHHHHTTSCTTCEEEEE-----------------------
T ss_pred CChhhceEEEEeCHHH----------HhhccCcHHH----HHHHHHhCCCCCEEEEE-----------------------
Confidence 4456677788888887 777 788888 99999999999999999
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEcc
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKP 1054 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~ 1054 (1858)
|||+|.+++++++.++++|+.|.++.
T Consensus 274 ---SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 274 ---SATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp ---ESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred ---eccCCHHHHHHHHHHCCCCeEEEecC
Confidence 99999999999999999999998864
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=9.4e-08 Score=107.89 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|++..+.+..... .....+.++-|+|+||.|+-+.+..+....++ +...+.||....
T Consensus 77 ~~~~~~~l~~l~~~~~~~-------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-----------~~~~~~g~~~~~ 138 (236)
T 2pl3_A 77 LAFLVPVLEALYRLQWTS-------TDGLGVLIISPTRELAYQTFEVLRKVGKNHDF-----------SAGLIIGGKDLK 138 (236)
T ss_dssp HHHHHHHHHHHHHTTCCG-------GGCCCEEEECSSHHHHHHHHHHHHHHTTTSSC-----------CEEEECCC--CH
T ss_pred HHHHHHHHHHHHhhcccc-------cCCceEEEEeCCHHHHHHHHHHHHHHhCCCCe-----------eEEEEECCCCHH
Confidence 346677777665533211 23345689999999999999988877655444 446678887765
Q ss_pred hhhhhhhhhcccccccccccccC--c-cccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILMS--P-NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFR 997 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~~--~-~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~R 997 (1858)
.+...+ ...++++.||++++.. . ..........+|+|||++ +.++||..+ +..|++.+++.+
T Consensus 139 ~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~----------~~~~~~~~~----~~~i~~~~~~~~ 203 (236)
T 2pl3_A 139 HEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADR----------ILDMGFADT----MNAVIENLPKKR 203 (236)
T ss_dssp HHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHH----------HHHTTTHHH----HHHHHHTSCTTS
T ss_pred HHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHH----------HhcCCcHHH----HHHHHHhCCCCC
Confidence 555544 4678899999999752 1 122233445677888877 889999988 999999999888
Q ss_pred HHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEcc
Q psy15269 998 AELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKP 1054 (1858)
Q Consensus 998 QtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~ 1054 (1858)
|.+++ |||+|+.++++++.++++|+.|.+..
T Consensus 204 ~~l~~--------------------------SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 204 QTLLF--------------------------SATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp EEEEE--------------------------ESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred eEEEE--------------------------EeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 89999 99999999999999999999998764
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.9e-08 Score=110.20 Aligned_cols=151 Identities=15% Similarity=0.186 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|++..+.+..... .....+.++.|+|+||.|+-+.+..+...... +..++.||....
T Consensus 106 ~~~~l~~l~~l~~~~~~~-------~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~-----------~~~~~~g~~~~~ 167 (262)
T 3ly5_A 106 LAFLIPAVELIVKLRFMP-------RNGTGVLILSPTRELAMQTFGVLKELMTHHVH-----------TYGLIMGGSNRS 167 (262)
T ss_dssp HHHHHHHHHHHHHTTCCG-------GGCCCEEEECSSHHHHHHHHHHHHHHTTTCCS-----------CEEEECSSSCHH
T ss_pred HHHHHHHHHHHHhccccc-------cCCceEEEEeCCHHHHHHHHHHHHHHHhhcCc-----------eEEEEECCCCHH
Confidence 446777887777643222 23445789999999999999988887765444 335678888877
Q ss_pred hhhhhhhhhcccccccccccccC---ccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILMS---PNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFR 997 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~~---~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~R 997 (1858)
.+...+..+.++++.||+++++. ...........+|+|||++ |.++||.++ ++.|++.+++.+
T Consensus 168 ~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~----------l~~~~~~~~----l~~i~~~~~~~~ 233 (262)
T 3ly5_A 168 AEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADR----------ILDVGFEEE----LKQIIKLLPTRR 233 (262)
T ss_dssp HHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHH----------HHHTTCHHH----HHHHHHHSCSSS
T ss_pred HHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHH----------HhhhhHHHH----HHHHHHhCCCCC
Confidence 78888888899999999999852 1112334455677888877 889999999 999999999889
Q ss_pred HHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCC-CEE
Q psy15269 998 AELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVED-PIM 1049 (1858)
Q Consensus 998 QtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~d-pv~ 1049 (1858)
|.+++ |||+|++++++++.++++ |++
T Consensus 234 q~l~~--------------------------SAT~~~~v~~~~~~~l~~~~~~ 260 (262)
T 3ly5_A 234 QTMLF--------------------------SATQTRKVEDLARISLKKEPLY 260 (262)
T ss_dssp EEEEE--------------------------CSSCCHHHHHHHHHHCSSCCEE
T ss_pred eEEEE--------------------------EecCCHHHHHHHHHHcCCCCee
Confidence 99999 999999999999999975 444
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-07 Score=106.53 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=103.2
Q ss_pred cCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cc
Q psy15269 867 TNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SP 944 (1858)
Q Consensus 867 ~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~ 944 (1858)
....+.++-|+|+||.|+-+.+..+. ... ++...+.||.....+...+.++.++++.||+++++ ..
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~ 160 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYS-YKG-----------LKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN 160 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHC-CTT-----------CCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhc-ccC-----------ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc
Confidence 34456899999999999988877654 122 24567789988888888888889999999999986 22
Q ss_pred cccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccc
Q psy15269 945 NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQH 1024 (1858)
Q Consensus 945 ~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~ 1024 (1858)
..........+|+|||++ +.+.||.++ ++.|++.+++.+|.+++
T Consensus 161 ~~~~~~~~~~lViDEah~----------~~~~~~~~~----~~~i~~~~~~~~~~l~~---------------------- 204 (228)
T 3iuy_A 161 NSVNLRSITYLVIDEADK----------MLDMEFEPQ----IRKILLDVRPDRQTVMT---------------------- 204 (228)
T ss_dssp TCCCCTTCCEEEECCHHH----------HHHTTCHHH----HHHHHHHSCSSCEEEEE----------------------
T ss_pred CCcCcccceEEEEECHHH----------HhccchHHH----HHHHHHhCCcCCeEEEE----------------------
Confidence 233344456677888877 888999999 99999999888888998
Q ss_pred ccCCCCCCcHhHHHHHHHhcCCCEEEEE
Q psy15269 1025 NSTDSLFSWGDIEEESNIEVEDPIMKLV 1052 (1858)
Q Consensus 1025 ~~~eSAT~p~~I~~la~~~L~dpv~I~v 1052 (1858)
|||+|++++++++.++++|+.|.|
T Consensus 205 ----SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 205 ----SATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp ----ESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred ----EeeCCHHHHHHHHHHCCCCEEEeC
Confidence 999999999999999999998864
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-07 Score=106.99 Aligned_cols=134 Identities=16% Similarity=0.080 Sum_probs=96.7
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhh-ccccccccccccc--Ccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKF-VRDMRHVSNNILM--SPN 945 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~-v~~l~~t~~~ll~--~~~ 945 (1858)
..+.++-|+|+||.|+.+.+..+.....+ +...+.||.....+...+.++ .++++.||+++++ ..+
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-----------~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~ 167 (237)
T 3bor_A 99 TQALVLAPTRELAQQIQKVILALGDYMGA-----------TCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR 167 (237)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTC-----------CEEEECC-------------CCCSEEEECHHHHHHHHHTT
T ss_pred ceEEEEECcHHHHHHHHHHHHHHhhhcCc-----------eEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhC
Confidence 35689999999999999988776654433 234567888777777777765 7899999999885 333
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
+........+|+|||++ |.+.||..+ +..|++.+++.+|.+++
T Consensus 168 ~~~~~~~~~lViDEah~----------~~~~~~~~~----l~~i~~~~~~~~~~i~~----------------------- 210 (237)
T 3bor_A 168 YLSPKWIKMFVLDEADE----------MLSRGFKDQ----IYEIFQKLNTSIQVVLL----------------------- 210 (237)
T ss_dssp SSCSTTCCEEEEESHHH----------HHHTTCHHH----HHHHHHHSCTTCEEEEE-----------------------
T ss_pred CcCcccCcEEEECCchH----------hhccCcHHH----HHHHHHhCCCCCeEEEE-----------------------
Confidence 44445556677888877 888999888 99999999888888898
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEc
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVK 1053 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~ 1053 (1858)
|||+|++++++++.++++|+.|.++
T Consensus 211 ---SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 211 ---SATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp ---CSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred ---EEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999775
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-07 Score=108.80 Aligned_cols=151 Identities=13% Similarity=0.150 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|++..+.+-. ....+.++-|+|+||.|+-+.+..+..... ++...+.||....
T Consensus 95 ~~~~~~il~~l~~~~-----------~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~-----------~~~~~~~g~~~~~ 152 (249)
T 3ber_A 95 GAFALPILNALLETP-----------QRLFALVLTPTRELAFQISEQFEALGSSIG-----------VQSAVIVGGIDSM 152 (249)
T ss_dssp HHHHHHHHHHHHHSC-----------CSSCEEEECSSHHHHHHHHHHHHHHHGGGT-----------CCEEEECTTSCHH
T ss_pred hHhHHHHHHHHhcCC-----------CCceEEEEeCCHHHHHHHHHHHHHHhccCC-----------eeEEEEECCCChH
Confidence 445666766664321 223468899999999999887766544333 2446678888776
Q ss_pred hhhhhhhhhcccccccccccccCc---cccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILMSP---NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFR 997 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~~~---~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~R 997 (1858)
.+...+.+..++++.||+++++.. ..........+|+|||++ +.++||..+ ++.|++.+++.+
T Consensus 153 ~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~----------l~~~~~~~~----l~~i~~~~~~~~ 218 (249)
T 3ber_A 153 SQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADR----------ILNMDFETE----VDKILKVIPRDR 218 (249)
T ss_dssp HHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHH----------HHHTTCHHH----HHHHHHSSCSSS
T ss_pred HHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhh----------hhccChHHH----HHHHHHhCCCCC
Confidence 677777778899999999998521 222334455677888877 888999999 999999998888
Q ss_pred HHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEc
Q psy15269 998 AELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVK 1053 (1858)
Q Consensus 998 QtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~ 1053 (1858)
|.+++ |||+|..++++++.+|++|+.|.++
T Consensus 219 ~~l~~--------------------------SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 219 KTFLF--------------------------SATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp EEEEE--------------------------ESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred eEEEE--------------------------eccCCHHHHHHHHHHCCCCEEEEec
Confidence 88998 9999999999999999999998764
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=98.16 E-value=4.7e-07 Score=99.60 Aligned_cols=133 Identities=14% Similarity=0.053 Sum_probs=106.7
Q ss_pred CccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccc
Q psy15269 868 NSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPN 945 (1858)
Q Consensus 868 ~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~ 945 (1858)
...+.++-|+|+|+.++-+.+..+... ++...+.||.....+...+.+..++++.||.+++. ..+
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~ 138 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPH-------------LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG 138 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTT-------------SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHT
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhc-------------ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcC
Confidence 345689999999999998887766543 24466788888777777777888999999999875 222
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
.........+|+|||++ +.+.+|..+ ++.|++.+++.+|.+++
T Consensus 139 ~~~~~~~~~iViDEah~----------~~~~~~~~~----~~~i~~~~~~~~~~i~~----------------------- 181 (207)
T 2gxq_A 139 VLDLSRVEVAVLDEADE----------MLSMGFEEE----VEALLSATPPSRQTLLF----------------------- 181 (207)
T ss_dssp SSCCTTCSEEEEESHHH----------HHHTTCHHH----HHHHHHTSCTTSEEEEE-----------------------
T ss_pred CcchhhceEEEEEChhH----------hhccchHHH----HHHHHHhCCccCeEEEE-----------------------
Confidence 33344456677888877 888899888 99999888888888888
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEc
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVK 1053 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~ 1053 (1858)
|||+|+.++++++.++++|+.|.+.
T Consensus 182 ---SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 182 ---SATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp ---CSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred ---EEecCHHHHHHHHHHcCCCeEEEcC
Confidence 9999999999999999999998764
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.11 E-value=4.1e-07 Score=101.55 Aligned_cols=138 Identities=12% Similarity=-0.012 Sum_probs=104.9
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~ 946 (1858)
..+.++-|+|+||.|+-+.+..+....+.. .=++...+.||.....+...+....++++.||+++.+ ..+.
T Consensus 73 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~ 145 (219)
T 1q0u_A 73 VQAVITAPTRELATQIYHETLKITKFCPKD-------RMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA 145 (219)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSCGG-------GCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhhhcccc-------cceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCC
Confidence 346899999999999988776665543210 0124456778876555555555677899999999885 2223
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNS 1026 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~ 1026 (1858)
........+|+|||++ +.+.||..+ ++.|++.+++.+|.+++
T Consensus 146 ~~~~~~~~lViDEah~----------~~~~~~~~~----l~~i~~~~~~~~~~l~~------------------------ 187 (219)
T 1q0u_A 146 LDVHTAHILVVDEADL----------MLDMGFITD----VDQIAARMPKDLQMLVF------------------------ 187 (219)
T ss_dssp CCGGGCCEEEECSHHH----------HHHTTCHHH----HHHHHHTSCTTCEEEEE------------------------
T ss_pred CCcCcceEEEEcCchH----------HhhhChHHH----HHHHHHhCCcccEEEEE------------------------
Confidence 3334455677888877 888999888 99999999888888898
Q ss_pred CCCCCCcHhHHHHHHHhcCCCEEEEEc
Q psy15269 1027 TDSLFSWGDIEEESNIEVEDPIMKLVK 1053 (1858)
Q Consensus 1027 ~eSAT~p~~I~~la~~~L~dpv~I~v~ 1053 (1858)
|||+|++++++++.++++|+.|.+.
T Consensus 188 --SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 188 --SATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp --ESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred --ecCCCHHHHHHHHHHcCCCeEEEee
Confidence 9999999999999999999998775
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=9.9e-07 Score=99.41 Aligned_cols=134 Identities=12% Similarity=0.084 Sum_probs=102.6
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~ 946 (1858)
..+.++-|+|+||.|+-+.+..+....+ .++..++.||.....+...+ +..++++.||+++++ ..+.
T Consensus 93 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~----------~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~ 161 (230)
T 2oxc_A 93 TQILILAPTREIAVQIHSVITAIGIKME----------GLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDY 161 (230)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTST----------TCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccC----------CceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCC
Confidence 3468999999999999988877654431 23456678887655554444 357889999999985 2233
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcC-CCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTA-LSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mG-F~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
........+|+|||++ +.++| |.++ ++.|++.+++.+|.+++
T Consensus 162 ~~~~~~~~lViDEah~----------~~~~~~~~~~----~~~i~~~~~~~~~~l~l----------------------- 204 (230)
T 2oxc_A 162 LNPGSIRLFILDEADK----------LLEEGSFQEQ----INWIYSSLPASKQMLAV----------------------- 204 (230)
T ss_dssp SCGGGCCEEEESSHHH----------HHSTTSSHHH----HHHHHHHSCSSCEEEEE-----------------------
T ss_pred cccccCCEEEeCCchH----------hhcCcchHHH----HHHHHHhCCCCCeEEEE-----------------------
Confidence 3344455677888877 88888 8888 99999999888888888
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEc
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVK 1053 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~ 1053 (1858)
|||+|++++++++.++++|+.|.+.
T Consensus 205 ---SAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 205 ---SATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp ---ESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred ---EeccCHHHHHHHHHHcCCCeEEEcC
Confidence 9999999999999999999988664
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.5e-06 Score=95.66 Aligned_cols=132 Identities=17% Similarity=0.085 Sum_probs=103.2
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~ 946 (1858)
..+.++-|+|+|+.|+-+.+..+....+- ++...+.||.....+...+....++++.||.++++ ..+.
T Consensus 72 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~ 141 (206)
T 1vec_A 72 IQAMVIVPTRELALQVSQICIQVSKHMGG----------AKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV 141 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSSS----------CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC
T ss_pred eeEEEEeCcHHHHHHHHHHHHHHHhhcCC----------ceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCC
Confidence 34689999999999998887766554321 23456788877666666666778899999999875 2223
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNS 1026 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~ 1026 (1858)
........+|+|||++ +.+.+|.+. ++.|++.+++.+|.+++
T Consensus 142 ~~~~~~~~lViDEah~----------~~~~~~~~~----l~~i~~~~~~~~~~l~~------------------------ 183 (206)
T 1vec_A 142 AKVDHVQMIVLDEADK----------LLSQDFVQI----MEDIILTLPKNRQILLY------------------------ 183 (206)
T ss_dssp SCCTTCCEEEEETHHH----------HTSTTTHHH----HHHHHHHSCTTCEEEEE------------------------
T ss_pred cCcccCCEEEEEChHH----------hHhhCcHHH----HHHHHHhCCccceEEEE------------------------
Confidence 3344456677888877 778888888 99999999888888888
Q ss_pred CCCCCCcHhHHHHHHHhcCCCEEE
Q psy15269 1027 TDSLFSWGDIEEESNIEVEDPIMK 1050 (1858)
Q Consensus 1027 ~eSAT~p~~I~~la~~~L~dpv~I 1050 (1858)
|||+|++++++++.++++|+.|
T Consensus 184 --SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 184 --SATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp --ESCCCHHHHHHHHHHCSSCEEE
T ss_pred --EeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999999999876
|
| >2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.3e-05 Score=83.77 Aligned_cols=141 Identities=12% Similarity=0.157 Sum_probs=107.3
Q ss_pred eEecCCCceEEEEecCCeEEEe-cCCCCceEEecccccCceEEEEEEEEeecCCCcc-eEEEEEeeccc--c-CCCC---
Q psy15269 1412 VSFDKEKCVCCTVECGGQSLIH-GPGTRGYGVANIGITRGCYQWKFLIVNEHKGNEG-TCIGVTRWPIR--D-YNHR--- 1483 (1858)
Q Consensus 1412 f~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~-~~vGva~~~~~--~-~~~~--- 1483 (1858)
..|=+.++..+.++++++++.- .++.++++.-+.++..| -.++++|++...+-.| ..|||...+-. . ..+.
T Consensus 9 l~FH~~~G~nI~L~~~~~~A~R~~sf~~givFS~RPl~~~-E~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~~~lP~~a~ 87 (168)
T 2yue_A 9 LQFHSVHGDNIRISRDGTLARRFESFCRAITFSARPVRIN-ERICVKFAEISNNWNGGIRFGFTSNDPVTLEGTLPKYAC 87 (168)
T ss_dssp CCEEEEECTTEEECCSSCCEEECSCSSCCEEEESSCCCSS-CCEEEEEEECCSSSSSCCEEEEESSCGGGTTTCCCSSSS
T ss_pred cccccccCCCeEECCCCcEEEecccCCceEEEECCCCcCC-CEEEEEEEeecCCcceeEEEeeeecCHHHcCCCCCCcCc
Confidence 4455544444999998877654 47889999999999999 4578888877655554 89999998655 2 2332
Q ss_pred ----CCCceeEEEeCCceeeeCCCCCccCCCcCCCCEEEEEEeccCceEEEEeCCccccccccCCCCCCceeEEEEEeec
Q psy15269 1484 ----TTGDMWLYRAYSGNVYHSGEQTTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPIVLFYST 1559 (1858)
Q Consensus 1484 ----~~~~~W~y~~~~g~~~h~~~~~~~~~~~~~gd~i~v~lDm~~~tl~f~~ng~~~GvAF~~l~~~~~lyP~Vs~y~~ 1559 (1858)
...+.|...- ..++. ..||.+++.+| .+|.|.|.+||+..|+++++++.+++||..|-+||+
T Consensus 88 ~dL~~~~~~W~~~l----------~~~~~---~~g~~l~f~v~-~~G~l~~~iNg~~~g~~~~~V~~~~pLwavvDvyG~ 153 (168)
T 2yue_A 88 PDLTNRPGFWAKAL----------HEQYC---EKDNILYYYVN-GAGDVIYGINNEEKGVILTGIDTRSLLWTVIDIYGN 153 (168)
T ss_dssp SHHHHSTTBCCEEC----------CSTTC---CSSCEEEEEEC-TTSEEEEEESSCEEEEEEECCCCSSCCEEEEECCSS
T ss_pred hHHhcCCCEEEEEe----------ccccc---cCCCEEEEEEc-CCCEEEEEECCCccEEEEcCCCCCCceEEEEEccCC
Confidence 2346775420 11111 67899999997 899999999999999999999987899999999999
Q ss_pred CCCCCeEEEEE
Q psy15269 1560 NANGEKVKITD 1570 (1858)
Q Consensus 1560 ~~~~~~v~~~~ 1570 (1858)
+. .|+|+.
T Consensus 154 t~---~V~il~ 161 (168)
T 2yue_A 154 CT---GIEFLD 161 (168)
T ss_dssp CS---EEEEEC
T ss_pred eE---EEEEec
Confidence 98 777763
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=97.96 E-value=2e-06 Score=95.93 Aligned_cols=135 Identities=15% Similarity=0.105 Sum_probs=95.6
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~ 946 (1858)
..+.++-|+|+|+.|+-+.+..+.....+ +...+.||.....+...+.+ .++++.||.++++ ..+.
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-----------~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~ 150 (224)
T 1qde_A 83 PQALMLAPTRELALQIQKVVMALAFHMDI-----------KVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRR 150 (224)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCC-----------CEEEECC----------CTT-CSEEEECHHHHHHHHHTTS
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhcccCc-----------eEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCC
Confidence 35689999999999999888776655444 33556777766555555544 7789999999875 2223
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNS 1026 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~ 1026 (1858)
........+|+|||++ +.+.||... +..|++.+++.+|.+++
T Consensus 151 ~~~~~~~~iViDEah~----------~~~~~~~~~----l~~i~~~~~~~~~~i~l------------------------ 192 (224)
T 1qde_A 151 FRTDKIKMFILDEADE----------MLSSGFKEQ----IYQIFTLLPPTTQVVLL------------------------ 192 (224)
T ss_dssp SCCTTCCEEEEETHHH----------HHHTTCHHH----HHHHHHHSCTTCEEEEE------------------------
T ss_pred cchhhCcEEEEcChhH----------HhhhhhHHH----HHHHHHhCCccCeEEEE------------------------
Confidence 3334456677888877 888899888 99999988888888888
Q ss_pred CCCCCCcHhHHHHHHHhcCCCEEEEEccC
Q psy15269 1027 TDSLFSWGDIEEESNIEVEDPIMKLVKPS 1055 (1858)
Q Consensus 1027 ~eSAT~p~~I~~la~~~L~dpv~I~v~~~ 1055 (1858)
|||+|.+++++++.++++|+.|.+..+
T Consensus 193 --SAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 193 --SATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp --ESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred --EeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999987643
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.9e-06 Score=97.80 Aligned_cols=137 Identities=12% Similarity=0.050 Sum_probs=96.4
Q ss_pred CccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhh-hhhhcccccccccccccC--c
Q psy15269 868 NSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIID-IDKFVRDMRHVSNNILMS--P 944 (1858)
Q Consensus 868 ~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~d-l~~~v~~l~~t~~~ll~~--~ 944 (1858)
...+.++-|+|+||.|+-+.+..+.....+. ...+.||.....+... .....++++.||+++++. .
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~ 166 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFR-----------IHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQ 166 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCC-----------EECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHS
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCce-----------EEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHh
Confidence 3457899999999999999888776655542 2334444332222211 223577899999999851 1
Q ss_pred c--ccccccccceeecccchhhhhhHHhhhhhh---cCCCchhhHHHHHHHHHhH-HHHHHHhhhccCCCCccccccccc
Q psy15269 945 N--YESDVNKYSVLLKYIPQQYKNLVYSYLIQQ---TALSPREKTVLEQIFSVVN-KFRAELLSAVSNAPSFDDNNVSMG 1018 (1858)
Q Consensus 945 ~--~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~---mGF~~~~~esL~~Il~~Lp-k~RQtLLf~~~~~~s~~~~~~s~~ 1018 (1858)
. .........+|+|||++ |.+ +||.++ +..|+..+. +.+|.+++
T Consensus 167 ~~~~~~~~~~~~lViDEah~----------~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~---------------- 216 (245)
T 3dkp_A 167 DPPGIDLASVEWLVVDESDK----------LFEDGKTGFRDQ----LASIFLACTSHKVRRAMF---------------- 216 (245)
T ss_dssp SSCSCCCTTCCEEEESSHHH----------HHHHC--CHHHH----HHHHHHHCCCTTCEEEEE----------------
T ss_pred CCCCcccccCcEEEEeChHH----------hcccccccHHHH----HHHHHHhcCCCCcEEEEE----------------
Confidence 1 23445566677888877 776 677777 888876653 34567777
Q ss_pred ccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccC
Q psy15269 1019 VTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPS 1055 (1858)
Q Consensus 1019 ~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~ 1055 (1858)
|||+|++++++++.++++|+.|.++.+
T Consensus 217 ----------SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 217 ----------SATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp ----------ESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred ----------eccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 999999999999999999999998754
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=97.76 E-value=3.4e-06 Score=93.93 Aligned_cols=133 Identities=15% Similarity=0.120 Sum_probs=101.8
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhh-hccccccccccccc--Cccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDK-FVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~-~v~~l~~t~~~ll~--~~~~ 946 (1858)
.+.++-|+|+|+.|+-+.+..+....| -++...+.||.....+...+.+ ..++++.||.+++. ....
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~----------~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~ 153 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFSKYMP----------NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS 153 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTST----------TCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhCC----------CceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCC
Confidence 468999999999999888776655432 1344677888877777777766 36889999999885 2222
Q ss_pred cccccccceeecccchhhhhhHHhhhhhh-cCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQ-TALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~-mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
........+|+|||++ +.+ .||..+ +..|++.+++.+|.+++
T Consensus 154 ~~~~~~~~lViDEah~----------~~~~~~~~~~----~~~i~~~~~~~~~~i~~----------------------- 196 (220)
T 1t6n_A 154 LNLKHIKHFILDECDK----------MLEQLDMRRD----VQEIFRMTPHEKQVMMF----------------------- 196 (220)
T ss_dssp SCCTTCCEEEEESHHH----------HHSSHHHHHH----HHHHHHTSCSSSEEEEE-----------------------
T ss_pred CCcccCCEEEEcCHHH----------HhcccCcHHH----HHHHHHhCCCcCeEEEE-----------------------
Confidence 3334456677888877 554 677777 88888888877888888
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEE
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLV 1052 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v 1052 (1858)
|||+|.+++++++.++++|+.|.+
T Consensus 197 ---SAT~~~~~~~~~~~~~~~p~~i~v 220 (220)
T 1t6n_A 197 ---SATLSKEIRPVCRKFMQDPMEIFV 220 (220)
T ss_dssp ---ESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred ---EeecCHHHHHHHHHHcCCCeEEeC
Confidence 999999999999999999998753
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.003 Score=83.05 Aligned_cols=80 Identities=6% Similarity=-0.044 Sum_probs=61.5
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccc-cc----Cc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNI-LM----SP 944 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~l-l~----~~ 944 (1858)
.+.++.|+|+||.++...++.+.....++ ..++.||+. .+.+.....++++++||+++ +| ..
T Consensus 122 qv~VvTPTreLA~Qdae~m~~l~~~lGLs-----------v~~i~Gg~~--~~~r~~ay~~DIvyGTpgrlgfDyLrd~m 188 (997)
T 2ipc_A 122 GVHVVTVNDYLARRDAEWMGPVYRGLGLS-----------VGVIQHAST--PAERRKAYLADVTYVTNSELGFDYLRDNM 188 (997)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHTTTCC-----------EEECCTTCC--HHHHHHHHTSSEEEEEHHHHHHHHHHHTS
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhcCCe-----------EEEEeCCCC--HHHHHHHcCCCEEEECchhhhhHHHHHhh
Confidence 47899999999999999999988888774 467899976 56666666899999999999 43 21
Q ss_pred ----cccccc---cccceeecccch
Q psy15269 945 ----NYESDV---NKYSVLLKYIPQ 962 (1858)
Q Consensus 945 ----~~~~~~---~~~~~lLd~a~r 962 (1858)
+..... ....+|+||||+
T Consensus 189 ~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 189 AISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp CSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred hcchhhcccccCCCcceEEEechHH
Confidence 112223 567788999987
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00098 Score=84.86 Aligned_cols=80 Identities=24% Similarity=0.381 Sum_probs=53.5
Q ss_pred CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEE--eccccccCCCCCC----cce
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVI--MTLSDFIGNDFTN----VEQ 1156 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILV--ATDVAARGLDIp~----V~~ 1156 (1858)
++++||++|++..+.+++.|+. ++ ...+|.. .+|.+++++|+++. .||+ +|+.+++|||+++ +++
T Consensus 385 g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~-----~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~ 455 (540)
T 2vl7_A 385 KSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK-----TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFES 455 (540)
T ss_dssp SEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT-----CCHHHHHHHHHTSC-CEEEEEC---------------CEEE
T ss_pred CCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC-----CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccE
Confidence 7899999999999999998875 33 4556654 25888999999864 6777 8999999999998 999
Q ss_pred EEEcCCCCCh-hhhhh
Q psy15269 1157 VIIYNLPLSI-NHYVF 1171 (1858)
Q Consensus 1157 VINyDlP~~~-e~YIH 1171 (1858)
||++++|... ++.++
T Consensus 456 Vii~~lPf~~~~d~~~ 471 (540)
T 2vl7_A 456 LVLAGLPYPNVSDDMV 471 (540)
T ss_dssp EEEESCCCCCTTSHHH
T ss_pred EEEECCCCCCCCCHHH
Confidence 9999999654 35544
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=95.73 E-value=4.1 Score=48.97 Aligned_cols=238 Identities=10% Similarity=0.110 Sum_probs=132.7
Q ss_pred CCeEEEEEcCCEEEEEecCCcEEEEcccccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCC
Q psy15269 219 SNIRHIEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEH 298 (1858)
Q Consensus 219 ~~IkqVA~G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~ 298 (1858)
..|..++......+.-..||.|..|-.. .+. ....+. .....|..++......+.-+.||.|+.|-....
T Consensus 174 ~~v~~l~~~~~~l~sg~~dg~i~vwd~~---~~~-----~~~~~~--~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~ 243 (435)
T 1p22_A 174 GSVLCLQYDERVIITGSSDSTVRVWDVN---TGE-----MLNTLI--HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 243 (435)
T ss_dssp SCEEEEECCSSEEEEEETTSCEEEEESS---SCC-----EEEEEC--CCCSCEEEEECCTTEEEEEETTSCEEEEECSSS
T ss_pred CcEEEEEECCCEEEEEcCCCeEEEEECC---CCc-----EEEEEc--CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCC
Confidence 3688888866666667789999999421 110 001111 112234555556667777788999999965432
Q ss_pred CCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccc-cCCCceEE
Q psy15269 299 GKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVT-ELSDVGAV 377 (1858)
Q Consensus 299 GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~-~l~~I~~I 377 (1858)
... .+..... .....|..++....+.+.-+.||.|..|-... +++ ...+. ....|..+
T Consensus 244 ~~~---------~~~~~~~-~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~----------~~~~~~~~~~v~~~ 302 (435)
T 1p22_A 244 TDI---------TLRRVLV-GHRAAVNVVDFDDKYIVSASGDRTIKVWNTST-CEF----------VRTLNGHKRGIACL 302 (435)
T ss_dssp SCC---------EEEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTT-CCE----------EEEEECCSSCEEEE
T ss_pred CCc---------eeeeEec-CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCc-CcE----------EEEEcCCCCcEEEE
Confidence 110 0111111 23346778887777888888899999996432 110 01111 12236666
Q ss_pred eecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEeCCCCC--
Q psy15269 378 SCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRS-- 455 (1858)
Q Consensus 378 AcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gs-- 455 (1858)
+......+.-..+|. |..|-... |+. ...+. .....|..++....+.+.-..||.|..|-+..+.
T Consensus 303 ~~~~~~l~~g~~dg~-i~iwd~~~-~~~----------~~~~~-~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 369 (435)
T 1p22_A 303 QYRDRLVVSGSSDNT-IRLWDIEC-GAC----------LRVLE-GHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDP 369 (435)
T ss_dssp EEETTEEEEEETTSC-EEEEETTT-CCE----------EEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTST
T ss_pred EeCCCEEEEEeCCCe-EEEEECCC-CCE----------EEEEe-CCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCc
Confidence 666677777778885 99986432 110 11111 1223477777777777777889999999821111
Q ss_pred CCccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCC
Q psy15269 456 SSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNT 500 (1858)
Q Consensus 456 s~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~ 500 (1858)
.......+.....-....|..++..+.+.+.-..||.|..|-..+
T Consensus 370 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 370 RAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp TSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC---
T ss_pred cccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCC
Confidence 000000011111112335777777666666666799999998755
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=94.69 E-value=10 Score=45.55 Aligned_cols=229 Identities=9% Similarity=0.105 Sum_probs=134.2
Q ss_pred CeEEEEEcCCEEEEEecCCcEEEEcccccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCC
Q psy15269 220 NIRHIEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHG 299 (1858)
Q Consensus 220 ~IkqVA~G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~G 299 (1858)
.|..++..+...+.-..||.|..|-.. .+ .....+. .....|..++......+.-+.||.|..|-....-
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~---~~-----~~~~~~~--~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKN---TL-----ECKRILT--GHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESS---SC-----CEEEEEC--CCSSCEEEEECCSSEEEEEETTSCEEEEESSSCC
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCC---CC-----eEEEEEc--CCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCc
Confidence 577777767777777889999999421 00 0011111 1122345555555666666789999999654321
Q ss_pred CcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCcccccccc-ccCCCceEEe
Q psy15269 300 KLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLV-TELSDVGAVS 378 (1858)
Q Consensus 300 QLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V-~~l~~I~~IA 378 (1858)
. ...+. .....|..++......+.-+.||.|+.|-....... .....+ .....|..++
T Consensus 205 ~-----------~~~~~--~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~--------~~~~~~~~~~~~v~~~~ 263 (435)
T 1p22_A 205 M-----------LNTLI--HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI--------TLRRVLVGHRAAVNVVD 263 (435)
T ss_dssp E-----------EEEEC--CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC--------EEEEEECCCSSCEEEEE
T ss_pred E-----------EEEEc--CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCc--------eeeeEecCCCCcEEEEE
Confidence 0 11111 133468888887778888889999999964321110 000111 1123466777
Q ss_pred ecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEeCCCCCCCc
Q psy15269 379 CGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSI 458 (1858)
Q Consensus 379 cG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~ 458 (1858)
....+.+.-..+| +|..|-.... + ....+. .....|..+.......+.-..||.|..|-...+.
T Consensus 264 ~~~~~l~s~~~dg-~i~vwd~~~~-~----------~~~~~~-~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~--- 327 (435)
T 1p22_A 264 FDDKYIVSASGDR-TIKVWNTSTC-E----------FVRTLN-GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA--- 327 (435)
T ss_dssp EETTEEEEEETTS-EEEEEETTTC-C----------EEEEEE-CCSSCEEEEEEETTEEEEEETTSCEEEEETTTCC---
T ss_pred eCCCEEEEEeCCC-eEEEEECCcC-c----------EEEEEc-CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCC---
Confidence 7677777777888 5999964321 1 011111 1223466777777777888889999999843221
Q ss_pred cccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCC
Q psy15269 459 SFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSN 499 (1858)
Q Consensus 459 ~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N 499 (1858)
....+. .....|..++..+.+.+.-..||.|..|-..
T Consensus 328 ---~~~~~~-~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~ 364 (435)
T 1p22_A 328 ---CLRVLE-GHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 364 (435)
T ss_dssp ---EEEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEEHH
T ss_pred ---EEEEEe-CCcCcEEEEEecCCEEEEEeCCCcEEEEECC
Confidence 111122 1234688888876776667779999999753
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=93.47 E-value=17 Score=43.61 Aligned_cols=254 Identities=10% Similarity=0.076 Sum_probs=145.3
Q ss_pred eeeCCeEEEEcCCCCCCCCcCCCCCcccccccCCCCCeEEEEEcCCEEEEEecCCcEEEEcccccCCCCCCCCCCceeec
Q psy15269 184 SVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVP 263 (1858)
Q Consensus 184 a~s~g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~~IkqVA~G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~ 263 (1858)
+..++.|..|-......+ -........|..++......+.-..||.|+.|-.. .+. ....+.
T Consensus 135 g~~dg~i~vwd~~~~~~~----------~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~---~~~-----~~~~~~ 196 (445)
T 2ovr_B 135 GSDDNTLKVWSAVTGKCL----------RTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE---TGE-----CIHTLY 196 (445)
T ss_dssp EETTSCEEEEETTTCCEE----------EECCCCSSCEEEEEEETTEEEEEETTSCEEEEETT---TTE-----EEEEEC
T ss_pred EECCCcEEEEECCCCcEE----------EEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECC---cCc-----EEEEEC
Confidence 346788889864321111 01111233577887777777777889999999421 110 001111
Q ss_pred CccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeE
Q psy15269 264 LEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLL 343 (1858)
Q Consensus 264 ~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~V 343 (1858)
.....|..++......+.-+.||.|+.|-...... ...+. .....|..++......+.-+.+|.|
T Consensus 197 --~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----------~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i 261 (445)
T 2ovr_B 197 --GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC-----------LHVLM--GHVAAVRCVQYDGRRVVSGAYDFMV 261 (445)
T ss_dssp --CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCE-----------EEEEE--CCSSCEEEEEECSSCEEEEETTSCE
T ss_pred --CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcE-----------EEEEc--CCcccEEEEEECCCEEEEEcCCCEE
Confidence 11123444445566777778899999996543111 11111 1234577777777777777889999
Q ss_pred EEEecCCCCCCCCCCCCccccccccc-cCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeec
Q psy15269 344 YTWGEGDHGRLGHGDLKSRHTPTLVT-ELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEAL 422 (1858)
Q Consensus 344 YtWG~N~~GQLG~G~~~~~~~P~~V~-~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l 422 (1858)
+.|-... ++ ....+. ....|..++....+.+.-..+|. |..|-.... +. ...+. .
T Consensus 262 ~iwd~~~-~~----------~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~-i~i~d~~~~-~~----------~~~~~-~ 317 (445)
T 2ovr_B 262 KVWDPET-ET----------CLHTLQGHTNRVYSLQFDGIHVVSGSLDTS-IRVWDVETG-NC----------IHTLT-G 317 (445)
T ss_dssp EEEEGGG-TE----------EEEEECCCSSCEEEEEECSSEEEEEETTSC-EEEEETTTC-CE----------EEEEC-C
T ss_pred EEEECCC-Cc----------EeEEecCCCCceEEEEECCCEEEEEeCCCe-EEEEECCCC-CE----------EEEEc-C
Confidence 9995432 10 000111 12246677776677777778885 998864331 10 01111 1
Q ss_pred ccccEEEEEecCceEEEEecCCcEEEEeCCCCCCCccccccEEecC--CCCCCEEEEEEcCceEEEEEeCCeEEEEeCCC
Q psy15269 423 RKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTG--LSSHQIVDVSIGDSHVLALSQYNEVYAWGSNT 500 (1858)
Q Consensus 423 ~~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~--l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~ 500 (1858)
....+..+.......+.-..||.|+.|-+..+. ....+.. .....|..++....+.+.-..||.|..|-...
T Consensus 318 ~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 318 HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ------CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp CCSCEEEEEEETTEEEEEETTSCEEEEETTTCC------EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred CcccEEEEEEeCCEEEEEeCCCeEEEEECCCCc------EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCC
Confidence 123456666666777777889999999843221 1122222 12346888888777777777899999998653
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=92.76 E-value=21 Score=42.76 Aligned_cols=223 Identities=11% Similarity=0.081 Sum_probs=127.1
Q ss_pred EEEEEcCCEEEEEecCCcEEEEcccccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCc
Q psy15269 222 RHIEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKL 301 (1858)
Q Consensus 222 kqVA~G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQL 301 (1858)
..++..+...+.-..||.|..|-.. .+. ....+. .....|..++......+.-..||.|+.|-.... +
T Consensus 123 ~~~~~~g~~l~sg~~dg~i~vwd~~---~~~-----~~~~~~--~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-~- 190 (445)
T 2ovr_B 123 TCLQFCGNRIVSGSDDNTLKVWSAV---TGK-----CLRTLV--GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG-E- 190 (445)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETT---TCC-----EEEECC--CCSSCEEEEEEETTEEEEEETTSCEEEEETTTT-E-
T ss_pred EEEEEcCCEEEEEECCCcEEEEECC---CCc-----EEEEEc--CCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC-c-
Confidence 3444445555666789999999521 110 001111 111223334444566667778999999965321 1
Q ss_pred CCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccc-cCCCceEEeec
Q psy15269 302 GHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVT-ELSDVGAVSCG 380 (1858)
Q Consensus 302 G~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~-~l~~I~~IAcG 380 (1858)
....+. .....|..++......+.-+.||.|+.|-... ++. ...+. ....|..++..
T Consensus 191 ---------~~~~~~--~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~----------~~~~~~~~~~v~~~~~~ 248 (445)
T 2ovr_B 191 ---------CIHTLY--GHTSTVRCMHLHEKRVVSGSRDATLRVWDIET-GQC----------LHVLMGHVAAVRCVQYD 248 (445)
T ss_dssp ---------EEEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEESSS-CCE----------EEEEECCSSCEEEEEEC
T ss_pred ---------EEEEEC--CCCCcEEEEEecCCEEEEEeCCCEEEEEECCC-CcE----------EEEEcCCcccEEEEEEC
Confidence 111111 13345777777777788888899999996432 110 00111 12236666666
Q ss_pred CceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeec--ccccEEEEEecCceEEEEecCCcEEEEeCCCCCCCc
Q psy15269 381 ESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEAL--RKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSI 458 (1858)
Q Consensus 381 ~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l--~~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~ 458 (1858)
....++-..+|. |..|-... ...+..+ ....|..+.....+.+.-..||.++.|-...+..
T Consensus 249 ~~~l~~~~~dg~-i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-- 311 (445)
T 2ovr_B 249 GRRVVSGAYDFM-VKVWDPET--------------ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC-- 311 (445)
T ss_dssp SSCEEEEETTSC-EEEEEGGG--------------TEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE--
T ss_pred CCEEEEEcCCCE-EEEEECCC--------------CcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCE--
Confidence 666667777885 88885322 1111111 2235777777777777778899999997432210
Q ss_pred cccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCC
Q psy15269 459 SFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNT 500 (1858)
Q Consensus 459 ~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~ 500 (1858)
...+. .....+..++......+.-..||.|+.|-...
T Consensus 312 ----~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 312 ----IHTLT-GHQSLTSGMELKDNILVSGNADSTVKIWDIKT 348 (445)
T ss_dssp ----EEEEC-CCCSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred ----EEEEc-CCcccEEEEEEeCCEEEEEeCCCeEEEEECCC
Confidence 11111 12345777777777777777899999997643
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=92.47 E-value=17 Score=40.89 Aligned_cols=305 Identities=7% Similarity=-0.032 Sum_probs=141.1
Q ss_pred eeeCCeEEEEcCCCCCCCCcCCCCCcccccccCCCCCeEEEEEcC-CEEEEEecCCcEEEEcccccCCCCCCCCCCceee
Q psy15269 184 SVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQ-FCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRV 262 (1858)
Q Consensus 184 a~s~g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~~IkqVA~G~-~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V 262 (1858)
...+|+.++++....+.+...................|..++... ...++...||.|..|-.. .+... .....+
T Consensus 17 ~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~---~~~~~--~~~~~~ 91 (337)
T 1gxr_A 17 VTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDIS---HPGNK--SPVSQL 91 (337)
T ss_dssp ECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETT---STTCC--SCSEEE
T ss_pred ECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECC---CCCce--eeeecc
Confidence 346788888886544333222111111111122234566666543 223333448888888422 11100 001111
Q ss_pred cCccCcceEEEEE--ecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEec--CceEEEEE
Q psy15269 263 PLEAAIVSLSVSK--CSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG--HSHSAAVT 338 (1858)
Q Consensus 263 ~~~~~i~~Is~Ia--~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G--~~HS~aLT 338 (1858)
........|..++ ......++-..+|.|+.|-..... ......+. .....|..++.. ..+.+.-+
T Consensus 92 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---------~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~ 160 (337)
T 1gxr_A 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT---------PRIKAELT--SSAPACYALAISPDSKVCFSCC 160 (337)
T ss_dssp ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------EEEEEEE--CSSSCEEEEEECTTSSEEEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC---------cceeeecc--cCCCceEEEEECCCCCEEEEEe
Confidence 1111112233222 233445555678999999653211 00011111 123346666543 34556667
Q ss_pred eCCeEEEEecCCCCCCCCCCCCcccccccccc-CCCceEEeec--CceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceec
Q psy15269 339 EDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTE-LSDVGAVSCG--ESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTT 415 (1858)
Q Consensus 339 ~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~-l~~I~~IAcG--~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~ 415 (1858)
.+|.|+.|-.... + ....+.. ...|..++.. ....+....+| .|+.|-..... .
T Consensus 161 ~dg~v~~~d~~~~-~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~-----------~ 217 (337)
T 1gxr_A 161 SDGNIAVWDLHNQ-T----------LVRQFQGHTDGASCIDISNDGTKLWTGGLDN-TVRSWDLREGR-----------Q 217 (337)
T ss_dssp TTSCEEEEETTTT-E----------EEEEECCCSSCEEEEEECTTSSEEEEEETTS-EEEEEETTTTE-----------E
T ss_pred CCCcEEEEeCCCC-c----------eeeeeecccCceEEEEECCCCCEEEEEecCC-cEEEEECCCCc-----------e
Confidence 7899999964321 1 0111111 1235555443 33444555677 58888543211 0
Q ss_pred cEEeeecccccEEEEEe--cCceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEc--CceEEEEEeCC
Q psy15269 416 PKVIEALRKFRVRKVCA--GTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIG--DSHVLALSQYN 491 (1858)
Q Consensus 416 P~~V~~l~~~~Iv~Iaa--G~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G--~~HtlALt~dG 491 (1858)
...+. ....+..++. .....++-+.+|.++.|-...+. ...+.. ....|..++.. +...+.-..+|
T Consensus 218 ~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg 287 (337)
T 1gxr_A 218 LQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-------KYQLHL-HESCVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp EEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-------EEEECC-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred Eeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-------eEEEcC-CccceeEEEECCCCCEEEEecCCC
Confidence 01111 1223444443 23455555678889998733221 112221 23467777776 33445555689
Q ss_pred eEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEee
Q psy15269 492 EVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSA 552 (1858)
Q Consensus 492 ~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~W 552 (1858)
.++.|-......+ ... .....|..++...+..++++. ..||.+..|
T Consensus 288 ~i~~~~~~~~~~~-------------~~~-~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw 333 (337)
T 1gxr_A 288 LLNAWRTPYGASI-------------FQS-KESSSVLSCDISVDDKYIVTG-SGDKKATVY 333 (337)
T ss_dssp EEEEEETTTCCEE-------------EEE-ECSSCEEEEEECTTSCEEEEE-ETTSCEEEE
T ss_pred cEEEEECCCCeEE-------------EEe-cCCCcEEEEEECCCCCEEEEe-cCCCeEEEE
Confidence 9999976432111 111 112345666555444444432 267888877
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.97 E-value=0.013 Score=66.11 Aligned_cols=121 Identities=12% Similarity=-0.075 Sum_probs=74.4
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCcccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPNYESD 949 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~~~~~ 949 (1858)
.+.++.|+|++|.++...+...... ++. ...| ..+..+........++++.||+++++.... ..
T Consensus 111 ~~l~~~p~~~la~q~~~~~~~~~~~-~~~-------------~~~g-~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l 174 (235)
T 3llm_A 111 NIVVTQPRRISAVSVAERVAFERGE-EPG-------------KSCG-YSVRFESILPRPHASIMFCTVGVLLRKLEA-GI 174 (235)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTTC-CTT-------------SSEE-EEETTEEECCCSSSEEEEEEHHHHHHHHHH-CC
T ss_pred EEEEeccchHHHHHHHHHHHHHhcc-ccC-------------ceEE-EeechhhccCCCCCeEEEECHHHHHHHHHh-hh
Confidence 4578899999999997766433221 110 0011 111111111113466889999999863322 35
Q ss_pred ccccceeecccchhhhhhHHhhhh-hhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCC
Q psy15269 950 VNKYSVLLKYIPQQYKNLVYSYLI-QQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTD 1028 (1858)
Q Consensus 950 ~~~~~~lLd~a~r~y~~~~~A~lL-~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~e 1028 (1858)
.....+|+|||++ + .+++|... .++.|+...+ .+|++++
T Consensus 175 ~~~~~lVlDEah~----------~~~~~~~~~~---~l~~i~~~~~-~~~~il~-------------------------- 214 (235)
T 3llm_A 175 RGISHVIVDEIHE----------RDINTDFLLV---VLRDVVQAYP-EVRIVLM-------------------------- 214 (235)
T ss_dssp TTCCEEEECCTTS----------CCHHHHHHHH---HHHHHHHHCT-TSEEEEE--------------------------
T ss_pred cCCcEEEEECCcc----------CCcchHHHHH---HHHHHHhhCC-CCeEEEE--------------------------
Confidence 5667788999987 4 66666632 2666666554 4667888
Q ss_pred CCCCcHhHHHHHHHhcCCCE
Q psy15269 1029 SLFSWGDIEEESNIEVEDPI 1048 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv 1048 (1858)
|||+|.+. +++.+..+|+
T Consensus 215 SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 215 SATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp ECSSCCHH--HHHHTTSCCC
T ss_pred ecCCCHHH--HHHHcCCCCE
Confidence 99999887 7777777775
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=90.76 E-value=12 Score=49.05 Aligned_cols=151 Identities=11% Similarity=0.091 Sum_probs=69.3
Q ss_pred CceEEEEEe-CCeEEEEecCCCCCCCCCCCC----ccccccccccCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCC
Q psy15269 331 HSHSAAVTE-DGLLYTWGEGDHGRLGHGDLK----SRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKL 405 (1858)
Q Consensus 331 ~~HS~aLT~-dG~VYtWG~N~~GQLG~G~~~----~~~~P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQL 405 (1858)
..|+++... +|++|++|-.....-...+.. .......+..++ ..-..|+.++..+|+ +|++|-.....
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p-----~~R~~h~~~~~~~~~-iyv~GG~~~~~- 513 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLS-----HTRFRHSACSLPDGN-VLILGGVTEGP- 513 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCS-----BCCBSCEEEECTTSC-EEEECCBCSSC-
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCC-----CCcccceEEEEcCCE-EEEECCCCCCC-
Confidence 468888776 899999984221110011100 000111111111 133468877766886 99998432111
Q ss_pred CCCCCCceeccEEeeecccccEEEEEe-------cCceE-EEEecC-CcEEEEeCCCCCCCccccccEEecCCCCCC---
Q psy15269 406 GHEDTGKVTTPKVIEALRKFRVRKVCA-------GTSFS-VALTWD-GLVFWWGLGLRSSSISFHTPVLVTGLSSHQ--- 473 (1858)
Q Consensus 406 G~g~~~~~~~P~~V~~l~~~~Iv~Iaa-------G~~hS-lALT~d-G~Vy~WGLG~gss~~~~~~P~~V~~l~~~~--- 473 (1858)
. ..+-.+.......+.. -..|+ +++..+ |++|++| |..........-..+-.+....
T Consensus 514 ----~------v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~G-G~~~~~~~~~~~v~~yd~~~~~w~~ 582 (695)
T 2zwa_A 514 ----A------MLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILG-GGFMDQTTVSDKAIIFKYDAENATE 582 (695)
T ss_dssp ----S------EEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEEC-CBCTTSSCBCCEEEEEEECTTCSSC
T ss_pred ----C------EEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEEC-CcCCCCCeeeCcEEEEEccCCcccc
Confidence 0 0111111112222221 22445 444555 8999999 2211100001111111111222
Q ss_pred ---EEEEEE-----cCceEEEEEeCCeEEEEeCC
Q psy15269 474 ---IVDVSI-----GDSHVLALSQYNEVYAWGSN 499 (1858)
Q Consensus 474 ---Iv~Ia~-----G~~HtlALt~dG~VYaWG~N 499 (1858)
...+.. -..|+++...+|++|.+|-.
T Consensus 583 ~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~ 616 (695)
T 2zwa_A 583 PITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGT 616 (695)
T ss_dssp CEEEEEEEECGGGCCBSCEEEEEETTEEEEECCB
T ss_pred ceEEEEcCCCCCCCcccceEEEeCCCEEEEECCc
Confidence 444433 25677777766999999953
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.98 E-value=33 Score=39.65 Aligned_cols=292 Identities=9% Similarity=0.003 Sum_probs=132.7
Q ss_pred CeEEEEEcC---CEEEEEecCCcEEEEcccccCCCCCCCCCCcee---ecC---ccCcceEEEEEe---cCcEEEEEeeC
Q psy15269 220 NIRHIEAGQ---FCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKR---VPL---EAAIVSLSVSKC---SEAHVLTVTSE 287 (1858)
Q Consensus 220 ~IkqVA~G~---~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~---V~~---~~~i~~Is~Ia~---G~~HtlaLT~d 287 (1858)
.|..++... ...+.-..||.|..|-.. .+.......... ... ......|..++. +....+.-..+
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLE---NSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEECC---CCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEECC---CCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 577777643 344445678999999532 111110000000 000 011223333333 44456666779
Q ss_pred CcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecC-----ceEEEEEeCCeEEEEecCCCCCCCCCCCCcc
Q psy15269 288 GEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGH-----SHSAAVTEDGLLYTWGEGDHGRLGHGDLKSR 362 (1858)
Q Consensus 288 G~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~-----~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~ 362 (1858)
|.|..|-..... +..... ....+..+.... ...++-+.+|.|+.|-......+
T Consensus 122 ~~i~iwd~~~~~------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-------- 179 (408)
T 4a11_B 122 KTLKVWDTNTLQ------------TADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS-------- 179 (408)
T ss_dssp SEEEEEETTTTE------------EEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC--------
T ss_pred CeEEEeeCCCCc------------cceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee--------
Confidence 999999654311 111110 122344444322 24566678899999965321110
Q ss_pred cccccccc-CCCceEEeecCc--e-EEEEEcCCCEEEEEeCCCCCCC-CCC---CCCceeccEEeeecccccEEEEEec-
Q psy15269 363 HTPTLVTE-LSDVGAVSCGES--H-TLVLSQDGHTVWSMGSGNLGKL-GHE---DTGKVTTPKVIEALRKFRVRKVCAG- 433 (1858)
Q Consensus 363 ~~P~~V~~-l~~I~~IAcG~~--H-TlaLt~dG~tVysWG~N~~GQL-G~g---~~~~~~~P~~V~~l~~~~Iv~IaaG- 433 (1858)
..+.. ...|..++.... + .+.-..+|. |+.|-....... -.- .......+..........|..++..
T Consensus 180 ---~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 180 ---HILQGHRQEILAVSWSPRYDYILATASADSR-VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp ---EEECCCCSCEEEEEECSSCTTEEEEEETTSC-EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred ---eeecCCCCcEEEEEECCCCCcEEEEEcCCCc-EEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 11111 123555554432 2 445567885 999965432210 000 0000000000001122346666554
Q ss_pred -CceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCC
Q psy15269 434 -TSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNP 512 (1858)
Q Consensus 434 -~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~ 512 (1858)
..+.+....+|.++.|-+..+...................+..........++...+|.|+.|-....-
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---------- 325 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE---------- 325 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC----------
T ss_pred CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc----------
Confidence 345666678999999984332211110000000011111222222234455566678999999864311
Q ss_pred cccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEeecc
Q psy15269 513 VDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAFT 554 (1858)
Q Consensus 513 vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~WG~ 554 (1858)
+.....-....|..++...+..++++. ..||.+..|--
T Consensus 326 ---~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iw~~ 363 (408)
T 4a11_B 326 ---QITMLKGHYKTVDCCVFQSNFQELYSG-SRDCNILAWVP 363 (408)
T ss_dssp ---EEEEECCCSSCEEEEEEETTTTEEEEE-ETTSCEEEEEE
T ss_pred ---ceeeeccCCCeEEEEEEcCCCCEEEEE-CCCCeEEEEeC
Confidence 111111122346666666555544442 37899999943
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=89.42 E-value=7.6 Score=50.75 Aligned_cols=63 Identities=19% Similarity=0.268 Sum_probs=33.4
Q ss_pred CcEEEEEee-CCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEE----ecCceEEEEEeCCeEEEEec
Q psy15269 278 EAHVLTVTS-EGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVS----AGHSHSAAVTEDGLLYTWGE 348 (1858)
Q Consensus 278 ~~HtlaLT~-dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa----~G~~HS~aLT~dG~VYtWG~ 348 (1858)
..|+++... +|++|.+|-.....-...+. .+.. ........+. .-..|++++-.+|+||++|-
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv-------~~yd-~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG 508 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGLSDN-------WIFD-MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGG 508 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBCCCC-------EEEE-TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECC
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCccccE-------EEEe-CCCCcEEECCCCCCCcccceEEEEcCCEEEEECC
Confidence 468877776 99999998532211000110 0000 1111222221 23567777755899999984
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=89.13 E-value=20 Score=46.17 Aligned_cols=73 Identities=19% Similarity=0.152 Sum_probs=38.4
Q ss_pred CceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEE----ecCcceEEEeecCCCCcEEeeccCc
Q psy15269 481 DSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQIC----AGSLFSIAYTVPPSNSALSSAFTPL 556 (1858)
Q Consensus 481 ~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia----~G~~hS~alt~~~~dG~vy~WG~n~ 556 (1858)
..|++++..+|+||..|-...+....+ ..+...+.... +...+...+. .-.+|+.++.. .||++|..|.+.
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~~~~--~~~~~~v~~yd-p~t~~W~~~~~~~~~R~~hs~a~ll--~dg~v~v~GG~~ 531 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIPFED--STPVFTPEIYV-PEQDTFYKQNPNSIVRVYHSISLLL--PDGRVFNGGGGL 531 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCTTCC--CSBCCCCEEEE-GGGTEEEECCCCSSCCCTTEEEEEC--TTSCEEEEECCC
T ss_pred ccCCeEECCCCCEEEECCcccCcCcCC--CCcccceEEEc-CCCCceeecCCCCCccccccHhhcC--CCcEEEecCCCC
Confidence 357777777999999997554431111 11111222211 1112222221 23467765432 689999998865
Q ss_pred cc
Q psy15269 557 CV 558 (1858)
Q Consensus 557 ~g 558 (1858)
++
T Consensus 532 ~~ 533 (656)
T 1k3i_A 532 CG 533 (656)
T ss_dssp CT
T ss_pred CC
Confidence 54
|
| >4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} | Back alignment and structure |
|---|
Probab=88.06 E-value=0.55 Score=53.11 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=55.9
Q ss_pred CcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCceEEeecCceEEEEEcCCCEEEEEeCCC
Q psy15269 322 KRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGN 401 (1858)
Q Consensus 322 ~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~ 401 (1858)
..|.+|+-.+.|.+++--++++|.+|+|++||+-.... -....++++|.++++-+..-+. |-.||+.-
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t-----------agPfla~~AG~~fTVTVn~~ny-v~FWGDSP 376 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH-----------AGPYIQLAAGHNFTVTVNTLNQ-VMFWGDSP 376 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG-----------GCCEEEEEECSSEEEEEETTCC-EEEEECCT
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCC-----------cchHHhHhccCCeEEEEeceee-EEEecCCC
Confidence 45778888899999999999999999999999833221 1237899999999999999995 99999754
Q ss_pred C
Q psy15269 402 L 402 (1858)
Q Consensus 402 ~ 402 (1858)
.
T Consensus 377 D 377 (400)
T 4gbf_A 377 D 377 (400)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=87.20 E-value=19 Score=46.34 Aligned_cols=69 Identities=20% Similarity=0.273 Sum_probs=36.1
Q ss_pred ceEEEEecCCcEEEEe-C--CCCCC-CccccccEEecCCCCCCEEEEE----EcCceEEE-EEeCCeEEEEeCCCCCCC
Q psy15269 435 SFSVALTWDGLVFWWG-L--GLRSS-SISFHTPVLVTGLSSHQIVDVS----IGDSHVLA-LSQYNEVYAWGSNTMGQC 504 (1858)
Q Consensus 435 ~hSlALT~dG~Vy~WG-L--G~gss-~~~~~~P~~V~~l~~~~Iv~Ia----~G~~HtlA-Lt~dG~VYaWG~N~~GQL 504 (1858)
.|++++..+|++|+.| . +.+.. ......+... .+.......+. .-..|+.+ +..+|+||..|.+.+|.+
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~y-dp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~~ 535 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIY-VPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDC 535 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEE-EGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTTC
T ss_pred cCCeEECCCCCEEEECCcccCcCcCCCCcccceEEE-cCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCCC
Confidence 5777777899999999 1 11100 0111111111 11112232222 12457654 457999999999876643
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=86.77 E-value=0.53 Score=60.94 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=55.1
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc--ccccCCCCCC--cceE
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL--SDFIGNDFTN--VEQV 1157 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD--VAARGLDIp~--V~~V 1157 (1858)
.+.++||+++.+..+.+++.|+..+.+ ..-+++ ..+|...+++|+ ++-.||+++. ..+.|||+++ ...|
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~~~~~~---~~q~~~---~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~v 520 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVSFEHMK---EYRGID---QKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMI 520 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCCSCCEE---CCTTCC---SHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcchh---ccCCCC---hhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEE
Confidence 378999999999999999988732222 334444 678999999999 8889999986 9999999976 6689
Q ss_pred EEcCCCCC
Q psy15269 1158 IIYNLPLS 1165 (1858)
Q Consensus 1158 INyDlP~~ 1165 (1858)
|-..+|.-
T Consensus 521 iI~~lPfp 528 (620)
T 4a15_A 521 ILAGLPFP 528 (620)
T ss_dssp EESSCCCC
T ss_pred EEEcCCCC
Confidence 98888854
|
| >4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} | Back alignment and structure |
|---|
Probab=86.50 E-value=1.3 Score=50.06 Aligned_cols=68 Identities=16% Similarity=0.309 Sum_probs=54.9
Q ss_pred ceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEec
Q psy15269 269 VSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGE 348 (1858)
Q Consensus 269 ~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~ 348 (1858)
..|..|+....|+.++-.|++++++|+|+.||+-..... -...++.+|.++++-+..-..+-.||+
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta--------------gPfla~~AG~~fTVTVn~~nyv~FWGD 374 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA--------------GPYIQLAAGHNFTVTVNTLNQVMFWGD 374 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG--------------CCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCc--------------chHHhHhccCCeEEEEeceeeEEEecC
Confidence 345556678899999999999999999999997643321 237799999999999999999999997
Q ss_pred CC
Q psy15269 349 GD 350 (1858)
Q Consensus 349 N~ 350 (1858)
.-
T Consensus 375 SP 376 (400)
T 4gbf_A 375 SP 376 (400)
T ss_dssp CT
T ss_pred CC
Confidence 43
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.61 E-value=48 Score=36.64 Aligned_cols=267 Identities=12% Similarity=0.055 Sum_probs=134.4
Q ss_pred CeEEEEEc-CCEEEEEecCCcEEEEcccccCCCCCCCCCCceeecC-ccCcceEEEEEecCcEEEEEeeCCcEEEEeCCC
Q psy15269 220 NIRHIEAG-QFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPL-EAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGE 297 (1858)
Q Consensus 220 ~IkqVA~G-~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~-~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~ 297 (1858)
.|..++.. +...+.-..||.|+.|-.. . ......+.. ...+..+. ........++-..+|.+..|-..+
T Consensus 20 ~v~~~~~~~~~~l~s~~~dg~v~vw~~~---~-----~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~dg~i~~~~~~~ 90 (313)
T 3odt_A 20 DVRDVVAVDDSKVASVSRDGTVRLWSKD---D-----QWLGTVVYTGQGFLNSVC-YDSEKELLLFGGKDTMINGVPLFA 90 (313)
T ss_dssp CEEEEEEEETTEEEEEETTSEEEEEEES---S-----SEEEEEEEECSSCEEEEE-EETTTTEEEEEETTSCEEEEETTC
T ss_pred CcEEEEecCCCEEEEEEcCCcEEEEECC---C-----CEEEEEeecCCccEEEEE-ECCCCCEEEEecCCCeEEEEEeee
Confidence 46666652 3344555688999998421 0 001111111 12222232 233445556666778888775533
Q ss_pred CCCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccc-cCCCceE
Q psy15269 298 HGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVT-ELSDVGA 376 (1858)
Q Consensus 298 ~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~-~l~~I~~ 376 (1858)
... ......+. .....|..++......+.-+.+|.|+.|-. ++ . ...+. ....|..
T Consensus 91 ~~~--------~~~~~~~~--~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~---~~---------~-~~~~~~~~~~v~~ 147 (313)
T 3odt_A 91 TSG--------EDPLYTLI--GHQGNVCSLSFQDGVVISGSWDKTAKVWKE---GS---------L-VYNLQAHNASVWD 147 (313)
T ss_dssp CTT--------SCC-CEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEET---TE---------E-EEEEECCSSCEEE
T ss_pred cCC--------CCcccchh--hcccCEEEEEecCCEEEEEeCCCCEEEEcC---Cc---------E-EEecccCCCceeE
Confidence 210 00011111 233567788777777788888999999941 11 0 00111 1123444
Q ss_pred Eee---cCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecC-ceEEEEecCCcEEEEeCC
Q psy15269 377 VSC---GESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGT-SFSVALTWDGLVFWWGLG 452 (1858)
Q Consensus 377 IAc---G~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~-~hSlALT~dG~Vy~WGLG 452 (1858)
+.. .....+.-..+|. |+.|-.. .....+.......|..++... ...++-..+|.++.|-..
T Consensus 148 ~~~~~~~~~~l~~~~~d~~-i~i~d~~-------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~ 213 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKT-IKLWQND-------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMH 213 (313)
T ss_dssp EEEEETTTTEEEEEETTSC-EEEEETT-------------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred EEEccCCCCEEEEEECCCC-EEEEecC-------------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECC
Confidence 433 4556666677885 8888411 011111111223344444322 225566788999999743
Q ss_pred CCCCCccccccEEecCCCCCCEEEEEEcCc-eEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEE
Q psy15269 453 LRSSSISFHTPVLVTGLSSHQIVDVSIGDS-HVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQIC 531 (1858)
Q Consensus 453 ~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~-HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia 531 (1858)
.+. ....+. .....|..++.... ..++-..||.|+.|-.... .+..........|..++
T Consensus 214 ~~~------~~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~-------------~~~~~~~~~~~~i~~~~ 273 (313)
T 3odt_A 214 TGD------VLRTYE-GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG-------------SLKQVITLPAISIWSVD 273 (313)
T ss_dssp TCC------EEEEEE-CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC-------------CEEEEEECSSSCEEEEE
T ss_pred chh------hhhhhh-cCCceEEEEEEecCCCEEEEecCCEEEEEECCCC-------------ceeEEEeccCceEEEEE
Confidence 221 111121 12346777777544 4555557899999975431 12222222233577777
Q ss_pred ecCcceEEEeecCCCCcEEeecc
Q psy15269 532 AGSLFSIAYTVPPSNSALSSAFT 554 (1858)
Q Consensus 532 ~G~~hS~alt~~~~dG~vy~WG~ 554 (1858)
.-.+..++.. ..||.++.|-.
T Consensus 274 ~~~~~~~~~~--~~dg~i~iw~~ 294 (313)
T 3odt_A 274 CMSNGDIIVG--SSDNLVRIFSQ 294 (313)
T ss_dssp ECTTSCEEEE--ETTSCEEEEES
T ss_pred EccCCCEEEE--eCCCcEEEEeC
Confidence 6555444433 37899999943
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=85.02 E-value=3.6 Score=49.03 Aligned_cols=107 Identities=6% Similarity=0.072 Sum_probs=70.1
Q ss_pred hHHHHHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccC
Q psy15269 1071 QKIVNLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIG 1148 (1858)
Q Consensus 1071 ~Kl~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARG 1148 (1858)
.-+..|+..++. .|++||++..+..+-+-.+|...|+....+-|... .+++ +. ++....+.+.|-.+.-|
T Consensus 112 ~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~---~~~~-k~----~~~~~~i~Lltsag~~g 183 (328)
T 3hgt_A 112 SVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSI---KSAA-AA----NDFSCTVHLFSSEGINF 183 (328)
T ss_dssp HHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC---------------CCSEEEEEEESSCCCT
T ss_pred HHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCch---hhhh-hc----ccCCceEEEEECCCCCC
Confidence 334455555543 79999999999999999999999999999999854 3221 11 23445554445555555
Q ss_pred CC-----CCCcceEEEcCCCCChhh-h------hhhcc-Ccc---eEEEEecC
Q psy15269 1149 ND-----FTNVEQVIIYNLPLSINH-Y------VFQIA-GHK---EAIAFYDP 1185 (1858)
Q Consensus 1149 LD-----Ip~V~~VINyDlP~~~e~-Y------IHRIa-g~~---~aitfvt~ 1185 (1858)
++ ....+.||-||.-+++.. . .||++ |++ ..+-|++.
T Consensus 184 in~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~ 236 (328)
T 3hgt_A 184 TKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAI 236 (328)
T ss_dssp TTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEET
T ss_pred cCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCC
Confidence 65 688999999999988865 2 35772 322 56777775
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=82.65 E-value=2.5 Score=56.18 Aligned_cols=75 Identities=20% Similarity=0.108 Sum_probs=63.0
Q ss_pred cCCcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccc-ccCCCCCCcc
Q psy15269 1081 EGKRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSD-FIGNDFTNVE 1155 (1858)
Q Consensus 1081 ~~~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVA-ARGLDIp~V~ 1155 (1858)
.+.+++|.++|+.-+...++.+++ .|+++..+||+++ ..+|...++++++|+.+|+|+|.-. ...+++.++.
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~---~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~ 492 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATT---PSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLG 492 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSC---HHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCC
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCC---HHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCc
Confidence 357999999999988877777664 4899999999998 9999999999999999999999733 2356778888
Q ss_pred eEE
Q psy15269 1156 QVI 1158 (1858)
Q Consensus 1156 ~VI 1158 (1858)
+||
T Consensus 493 lVV 495 (780)
T 1gm5_A 493 LVI 495 (780)
T ss_dssp EEE
T ss_pred eEE
Confidence 777
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.30 E-value=71 Score=36.03 Aligned_cols=235 Identities=10% Similarity=0.060 Sum_probs=115.1
Q ss_pred CCeEEEEEcCC-----EEEEEecCCcEEEEcccccCCCCCCCCCCceeecC-ccCcceEEEEEecCcEEEEEeeCCcEEE
Q psy15269 219 SNIRHIEAGQF-----CTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPL-EAAIVSLSVSKCSEAHVLTVTSEGEVYS 292 (1858)
Q Consensus 219 ~~IkqVA~G~~-----hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~-~~~i~~Is~Ia~G~~HtlaLT~dG~Vys 292 (1858)
..|..|+.... ..+.-..||.|..|-....+ ......+.. ...+..+. ........+.-+.||.|..
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~-~~~~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG------QTIPKAQQMHTGPVLDVC-WSDDGSKVFTASCDKTAKM 112 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS------CEEEEEEEECSSCEEEEE-ECTTSSEEEEEETTSEEEE
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC------ceeEEEeccccCCEEEEE-ECcCCCEEEEEcCCCcEEE
Confidence 46888887654 33334578999988421101 000011111 12222232 2223445666677899999
Q ss_pred EeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEe--cC--ceEEEEEeCCeEEEEecCCCCCCCCCCCCcccccccc
Q psy15269 293 WGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSA--GH--SHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLV 368 (1858)
Q Consensus 293 WG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~--G~--~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V 368 (1858)
|-..... +.... .....|..++. .. .+.+.-+.||.|+.|-... ++. -..+
T Consensus 113 wd~~~~~------------~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~----------~~~~ 167 (368)
T 3mmy_A 113 WDLSSNQ------------AIQIA--QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS-SNP----------MMVL 167 (368)
T ss_dssp EETTTTE------------EEEEE--ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC-SSC----------SEEE
T ss_pred EEcCCCC------------ceeec--cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC-CcE----------EEEE
Confidence 9654211 11121 13345777764 32 3345556789999995432 110 0112
Q ss_pred ccCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeec--ccccEEEEEecCce----EEEEec
Q psy15269 369 TELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEAL--RKFRVRKVCAGTSF----SVALTW 442 (1858)
Q Consensus 369 ~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l--~~~~Iv~IaaG~~h----SlALT~ 442 (1858)
.....+..+..-....++.+.+|. +..|-...... ....+... ....+..+...... .++-..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (368)
T 3mmy_A 168 QLPERCYCADVIYPMAVVATAERG-LIVYQLENQPS----------EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI 236 (368)
T ss_dssp ECSSCEEEEEEETTEEEEEEGGGC-EEEEECSSSCE----------EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred ecCCCceEEEecCCeeEEEeCCCc-EEEEEeccccc----------hhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence 222345555555666777778885 88886533111 00111111 11223334333332 566678
Q ss_pred CCcEEEEeCCCCCCCccccccEEecCCCC-----------CCEEEEEEcCc--eEEEEEeCCeEEEEeCC
Q psy15269 443 DGLVFWWGLGLRSSSISFHTPVLVTGLSS-----------HQIVDVSIGDS--HVLALSQYNEVYAWGSN 499 (1858)
Q Consensus 443 dG~Vy~WGLG~gss~~~~~~P~~V~~l~~-----------~~Iv~Ia~G~~--HtlALt~dG~VYaWG~N 499 (1858)
+|.+..|-+...... .....+..-.. ..|..++.... +.+.-..||.|+.|-..
T Consensus 237 dg~i~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 237 EGRVAIHYINPPNPA---KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD 303 (368)
T ss_dssp TSEEEEEESSCSCHH---HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred CCcEEEEecCCCCcc---ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC
Confidence 999999984322110 01111111100 14777776533 34444568999999754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1858 | ||||
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 6e-35 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 1e-26 | |
| d2fnja1 | 217 | b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophi | 2e-13 | |
| d2afja1 | 213 | b.29.1.22 (A:12-224) SPRY domain-containing SOCS b | 6e-13 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 4e-12 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 1e-10 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 9e-09 | |
| d2fbea1 | 188 | b.29.1.22 (A:1-188) Similar to Ret finger protein- | 2e-05 | |
| d2iwgb1 | 179 | b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo | 0.001 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 0.001 |
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 137 bits (344), Expect = 6e-35
Identities = 81/403 (20%), Positives = 141/403 (34%), Gaps = 42/403 (10%)
Query: 183 ISVAHS-------KVYTWGCNLHHQI-LDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLL 234
+ V+H V T G Q+ L E + +P L S+P ++ EAG T L
Sbjct: 3 VKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCL 62
Query: 235 DSTGGLLVYGKGWLG-LANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSW 293
+G + +G G L T + VP + + V + ++
Sbjct: 63 SKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFL 122
Query: 294 GVGEHGKLGH-GNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHG 352
G G ++ + + V +V++G+ H +T DG LYT G G+ G
Sbjct: 123 WGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQG 182
Query: 353 RLGHGDLKSRHTPTLVT------------------ELSDVGAVSCGESHTLVLSQDGHTV 394
+LG + CG T +S +G V
Sbjct: 183 QLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEG-HV 241
Query: 395 WSMGSGNLGKLGHEDTGKVTTPKVIEALRKFR--VRKVCAGTSFSVALTWDGLVFWWGL- 451
+ G N +LG T P+ + + + G +V + +G + G
Sbjct: 242 YGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRA 301
Query: 452 -----GLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQ 506
GL + P L++ L + + V+ G S A+++ V+AWG T Q G
Sbjct: 302 EYGRLGLGEGAEEKSIPTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGT 359
Query: 507 DNFSNPVDQPSKVVG--LEDVCVRQICAGSLFSIAYTVPPSNS 547
+ P +++G LE+ V + +G ++ S
Sbjct: 360 GQDED-AWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQS 401
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (280), Expect = 1e-26
Identities = 60/345 (17%), Positives = 99/345 (28%), Gaps = 83/345 (24%)
Query: 275 KCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQR-RPKLIMGGLYGKRVTQVSAGHSH 333
K +H T G V + G G+ G+LG G + +R +P L+ + V Q AG H
Sbjct: 2 KVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP---EDVVQAEAGGMH 58
Query: 334 SAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSC-------------- 379
+ +++ G +Y++G D G LG V
Sbjct: 59 TVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDG 118
Query: 380 --------------------------------GESHTLVLSQDGHTVWSMGSGNL----- 402
V S + H V G+L
Sbjct: 119 RVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGC 178
Query: 403 ---GKLGHEDTGKVTTP----------------KVIEALRKFRVRKVCAGTSFSVALTWD 443
G+LG K + R + G F+ A++ +
Sbjct: 179 GEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHE 238
Query: 444 GLVFWWGLGLRSSSISFHTPVLVTGLSSH-------QIVDVSIGDSHVLALSQYNEVYAW 496
G V+ +GL + T + V S G H + + + Y+
Sbjct: 239 GHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSL 298
Query: 497 GSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYT 541
G G+ G + P+ + L V + G+ A T
Sbjct: 299 GRAEYGRLGLGEGAEEKSIPTLISRLPA--VSSVACGASVGYAVT 341
|
| >d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: SPRY domain domain: LD34464p species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 69.4 bits (169), Expect = 2e-13
Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 22/170 (12%)
Query: 1425 ECGGQSLIHGPGTRGYGV--ANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIRDYNH 1482
E + P + +G+T+G + W+ +G +GV ++
Sbjct: 39 EDDKLTFHRHPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTH-AVVGVCTADAPLHSV 97
Query: 1483 R------TTGDMWLYRAYSGNVYHSGEQTT---------MLPSFTQGDYITVVLDMDAQT 1527
+T W + +YH + +F D V LDMD T
Sbjct: 98 GYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGT 157
Query: 1528 LSFGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNANGEKVKITDMTVCETP 1577
LSF + + +AF+ L LYPIV S ++ + + +
Sbjct: 158 LSFIVDQQYLGIAFRGL-RGKKLYPIV---SAVWGHCEITMRYIGGLDPE 203
|
| >d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 213 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: SPRY domain domain: SPRY domain-containing SOCS box protein 2 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 68.0 bits (165), Expect = 6e-13
Identities = 31/162 (19%), Positives = 46/162 (28%), Gaps = 21/162 (12%)
Query: 1423 TVECGGQSLIHGPGTRGYGV--ANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIRDY 1480
V+ GG P + G +RG + W+ + +GV
Sbjct: 47 DVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEI-SWPLEQRGTHAVVGVATALAPLQ 105
Query: 1481 NHRTTGDM--------------WLYRAYSGNVYHSGEQTTMLPSFTQGDYITVVLDMDAQ 1526
+ LY G + + VVLDM+
Sbjct: 106 ADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEG 165
Query: 1527 TLSFGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNANGEKVKI 1568
TL + G AF+ L LYP V S +V+I
Sbjct: 166 TLGYSIGGTYLGPAFRGLKGR-TLYPSV---SAVWGQCQVRI 203
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Score = 66.7 bits (161), Expect = 4e-12
Identities = 51/276 (18%), Positives = 85/276 (30%), Gaps = 19/276 (6%)
Query: 252 NTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRR 311
N ++ + +++ H L + G+V WG +G+L
Sbjct: 12 NNDWGEATVPAEAQSGVDAIA---GGYFHGLALKG-GKVLGWGANLNGQLTMPAATQSGV 67
Query: 312 PKLIMGG---LYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLV 368
+ G L K ++ G + T + +
Sbjct: 68 DAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAW 127
Query: 369 TELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVR 428
+ SD E+ + V + DG ++ N G + D T EA
Sbjct: 128 GDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDD- 186
Query: 429 KVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALS 488
AG F DG V WG + T V LS + ++ G+ + LAL
Sbjct: 187 --VAGGIFHSLALKDGKVIAWG-----DNRYKQTTVPTEALSG--VSAIASGEWYSLALK 237
Query: 489 QYNEVYAWGSNTMGQCG-QDNFSNPVDQPSKVVGLE 523
+V AWGS+ Q S+ P+ L+
Sbjct: 238 N-GKVIAWGSSRTAPSSVQSGVSSIEAGPNAAYALK 272
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Score = 62.1 bits (149), Expect = 1e-10
Identities = 47/275 (17%), Positives = 80/275 (29%), Gaps = 58/275 (21%)
Query: 286 SEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYT 345
+ V +WG G ++ V ++ G+ H A+ G +
Sbjct: 2 AATSVVAWGGNNDW--GEATVPAEA----------QSGVDAIAGGYFHGLALK-GGKVLG 48
Query: 346 WGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKL 405
WG +G+L A++ G H+L V + G G+
Sbjct: 49 WGANLNGQLTMPAATQSGVD----------AIAAGNYHSLA--LKDGEVIAWGGNEDGQT 96
Query: 406 GHEDTGKVTTPKVIEALRKFRVRKVCA---------GTSFSVALTWDGLVFWWGL----- 451
+ + K G + A G+ G
Sbjct: 97 TVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTAL 156
Query: 452 -----GLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQ 506
G+ + ++ V + + DV+ G H LAL + +V AWG N Q
Sbjct: 157 AVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTV 215
Query: 507 DNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYT 541
P + S V I +G +S+A
Sbjct: 216 -----PTEALSGVS--------AIASGEWYSLALK 237
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Score = 56.3 bits (134), Expect = 9e-09
Identities = 43/279 (15%), Positives = 81/279 (29%), Gaps = 33/279 (11%)
Query: 161 NSNTDIDSTSTPKLTYNIGDTDISVAHS------KVYTWGCNLHHQILDEVRGKCSRPRL 214
+N ++T + + H KV WG NL+ Q+ ++ +
Sbjct: 11 GNNDWGEATVPAEAQSGVDAIAGGYFHGLALKGGKVLGWGANLNGQL---TMPAATQSGV 67
Query: 215 QSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVS 274
++ + H A + + GG A + + + A+ V
Sbjct: 68 DAIAAGNYHSLALKDGEV--IAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVI 125
Query: 275 KCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQV------- 327
+ T E S G + + +G+
Sbjct: 126 AWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVD 185
Query: 328 -SAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLV 386
AG + +DG + WG+ + + LS V A++ GE ++L
Sbjct: 186 DVAGGIFHSLALKDGKVIAWGDNRYKQTTVP----------TEALSGVSAIASGEWYSLA 235
Query: 387 LSQDGHTVWSMGSGNLGKLG--HEDTGKVTTPKVIEALR 423
L +G V + GS + P AL+
Sbjct: 236 LK-NG-KVIAWGSSRTAPSSVQSGVSSIEAGPNAAYALK 272
|
| >d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 188 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: SPRY domain domain: Similar to Ret finger protein-like 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (106), Expect = 2e-05
Identities = 22/161 (13%), Positives = 51/161 (31%), Gaps = 15/161 (9%)
Query: 1423 TVECGG--QSLIHGPGTRGYGVANIG---ITRGCYQWKFLIVNEHKGNEGTCIGVTRWPI 1477
+ G Q+ + +G T G + W+ + ++ +GV + +
Sbjct: 31 SFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEV----DVGTSQVWDVGVCKESV 86
Query: 1478 R---DYNHRTTGDMWLYRAYSGNVY-HSGEQTTMLPSFTQGDYITVVLDMDAQTLSFGKN 1533
+ G V+ S T L Q + + LD+ ++++F
Sbjct: 87 NRQGKIELSSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNV 146
Query: 1534 GEEPHL-AFQDLDTSAPLYPI-VLFYSTNANGEKVKITDMT 1572
+ H+ F ++ P P + + + I +
Sbjct: 147 SDGCHIYTFIEIPVCEPWRPFFAHKRGSQDDQSILSICSVI 187
|
| >d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 9606]} Length = 179 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: SPRY domain domain: 52 kDa Ro protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (92), Expect = 0.001
Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 13/139 (9%)
Query: 1442 VANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR---DYNHRTTGDMWLYRAYSGNV 1498
+ G + W+ + G E +GV R +R + + W ++
Sbjct: 46 LGAQHFHSGKHYWEV----DVTGKEAWDLGVCRDSVRRKGHFLLSSKSGFWTIWLWNKQK 101
Query: 1499 YHSGE-QTTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHL--AFQDLDTSAPLYPIVL 1555
Y +G T L + + LD +A +SF + L +F + + PL P
Sbjct: 102 YEAGTYPQTPLHLQVPPCQVGIFLDYEAGMVSFYNITDHGSLIYSFSECAFTGPLRP--- 158
Query: 1556 FYSTNANGEKVKITDMTVC 1574
F+S N +T+C
Sbjct: 159 FFSPGFNDGGKNTAPLTLC 177
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 40.3 bits (94), Expect = 0.001
Identities = 19/140 (13%), Positives = 37/140 (26%), Gaps = 16/140 (11%)
Query: 1060 VKQYLIRTPKSQKIVNLLSFLE---GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNG 1116
+++ + T LE G R LIF + + + + + + +
Sbjct: 11 IEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGL 70
Query: 1117 TS-------WSHVECLELLNLFNTGKSSLVIMT---LSDFIGNDFTNVEQVIIYNLPLSI 1166
V + L TG VI ++ + + LP
Sbjct: 71 DVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDA 130
Query: 1167 NHYVFQI--AG-HKEAIAFY 1183
+ G K I +
Sbjct: 131 VSRTQRRGRTGRGKPGIYRF 150
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1858 | |||
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 100.0 | |
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 100.0 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 100.0 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 99.97 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.94 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.93 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.93 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.92 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.92 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.9 | |
| d2fnja1 | 217 | LD34464p {Fruit fly (Drosophila melanogaster) [Tax | 99.89 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.87 | |
| d2afja1 | 213 | SPRY domain-containing SOCS box protein 2 {Mouse ( | 99.87 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.84 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.82 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.68 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.62 | |
| d2fbea1 | 188 | Similar to Ret finger protein-like 1 {Human (Homo | 99.56 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.55 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.46 | |
| d2iwgb1 | 179 | 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 96 | 99.42 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.3 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.27 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.27 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.22 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.11 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.09 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.05 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.03 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.01 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 98.87 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 98.85 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.8 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 98.78 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.76 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 98.75 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 98.55 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.42 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 97.69 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.23 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.04 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 95.55 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 89.47 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 89.16 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 88.5 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 85.34 |
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.7e-49 Score=471.67 Aligned_cols=357 Identities=23% Similarity=0.335 Sum_probs=291.6
Q ss_pred ccccceeeCCeEEEEcCCCCCCCCcCCCC-CcccccccCCCCCeEEEEEcCCEEEEEecCCcEEEEccc---ccCCCCCC
Q psy15269 179 GDTDISVAHSKVYTWGCNLHHQILDEVRG-KCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLANTT 254 (1858)
Q Consensus 179 g~t~~a~s~g~Vy~WGsN~~GQLG~g~~~-~~~~P~~v~~~~~IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~~ 254 (1858)
.|+.+.+.+|+||+||.|.+||||.|... ....|.+++.+.+|++|+||.+|+++|+++|+||+||.| |||.+...
T Consensus 6 ~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~~~ 85 (401)
T d1a12a_ 6 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSV 85 (401)
T ss_dssp CCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCS
T ss_pred eEEEEECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCCCeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCccccc
Confidence 46667778999999999999999998654 578999999999999999999999999999999999987 77777665
Q ss_pred CCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCccccc-ceeeecCCCCCcEEEEEecCce
Q psy15269 255 IQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRR-PKLIMGGLYGKRVTQVSAGHSH 333 (1858)
Q Consensus 255 ~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~-P~~V~~~l~~~~IvqVa~G~~H 333 (1858)
....|...... ...+|++|+||..|+++++++|+||+||.+..++.+.+....... +..+. ...+..|++|+||..|
T Consensus 86 ~~~~~~~~~~~-~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~g~~~ 163 (401)
T d1a12a_ 86 EGSEMVPGKVE-LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQ-VQLDVPVVKVASGNDH 163 (401)
T ss_dssp TTGGGSCEECC-CCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEE-ECCSSCEEEEEECSSE
T ss_pred ccccccccccc-cccceeeecccccceeeccccccceeccccccccccccccCCccccceeee-eccCCceeEEEecccc
Confidence 55444433332 124566778999999999999999999998776665544333222 22222 2456789999999999
Q ss_pred EEEEEeCCeEEEEecCCCCCCCCCCCCcc-----------ccccccc-------cCCCceEEeecCceEEEEEcCCCEEE
Q psy15269 334 SAAVTEDGLLYTWGEGDHGRLGHGDLKSR-----------HTPTLVT-------ELSDVGAVSCGESHTLVLSQDGHTVW 395 (1858)
Q Consensus 334 S~aLT~dG~VYtWG~N~~GQLG~G~~~~~-----------~~P~~V~-------~l~~I~~IAcG~~HTlaLt~dG~tVy 395 (1858)
+++++++|++|+||.|.+||||.+..... ..|..+. ....|.+|+||..|+++++.+|+ +|
T Consensus 164 ~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~-v~ 242 (401)
T d1a12a_ 164 LVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH-VY 242 (401)
T ss_dssp EEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCC-EE
T ss_pred eeeeecCCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCCe-Ee
Confidence 99999999999999999999998643211 1232222 11248999999999999999996 99
Q ss_pred EEeCCCCCCCCCCCCCceeccEEeeeccc--ccEEEEEecCceEEEEecCCcEEEEe------CCCCCCCccccccEEec
Q psy15269 396 SMGSGNLGKLGHEDTGKVTTPKVIEALRK--FRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFHTPVLVT 467 (1858)
Q Consensus 396 sWG~N~~GQLG~g~~~~~~~P~~V~~l~~--~~Iv~IaaG~~hSlALT~dG~Vy~WG------LG~gss~~~~~~P~~V~ 467 (1858)
+||.|.+|++|.........+..+..+.. ..|+.+++|..|+++++++|+||+|| +|.+........|+.++
T Consensus 243 ~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i~ 322 (401)
T d1a12a_ 243 GFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS 322 (401)
T ss_dssp EEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECC
T ss_pred eecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccccccCCEEcC
Confidence 99999999999998887777777665443 56999999999999999999999999 56666666677899888
Q ss_pred CCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeec--CCCceEEEEEecCcceEEEe
Q psy15269 468 GLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVG--LEDVCVRQICAGSLFSIAYT 541 (1858)
Q Consensus 468 ~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~--L~~~~I~~Ia~G~~hS~alt 541 (1858)
.+. +|++|+||.+|++|++++|+||+||.|.+||||.|+..+ ...|+++.. +.+.+|.+|+||.+||++++
T Consensus 323 ~~~--~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~-~~~P~~v~~~~~~~~~v~~v~~G~~hs~~l~ 395 (401)
T d1a12a_ 323 RLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDED-AWSPVEMMGKQLENRVVLSVSSGGQHTVLLV 395 (401)
T ss_dssp SSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSC-EEEEEECCSTTTTTEEEEEEEECSSEEEEEE
T ss_pred CCC--CeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCCCC-EecCEEeeccCCCCCEEEEEEEccceEEEEE
Confidence 764 799999999999999999999999999999999998755 457877753 56778999999999999998
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.3e-43 Score=420.13 Aligned_cols=325 Identities=23% Similarity=0.371 Sum_probs=261.0
Q ss_pred CEEEEEecCCcEEEEccc---ccCCCCCC-CCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCC
Q psy15269 229 FCTFLLDSTGGLLVYGKG---WLGLANTT-IQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHG 304 (1858)
Q Consensus 229 ~hTlaLt~dG~VyawG~N---qLGlg~~~-~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g 304 (1858)
.|+++++++|+||+||.| |||.++.. ....|.+|+...+ |++|+||.+|++||+++|+||+||.|.+||||++
T Consensus 6 ~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~---i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g 82 (401)
T d1a12a_ 6 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED---VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRD 82 (401)
T ss_dssp CCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSC---EEEEEECSSEEEEEETTSCEEEEECCTTSTTCSC
T ss_pred eEEEEECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCCC---eEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCcc
Confidence 689999999999999986 88887654 4677888876644 6667799999999999999999999999999999
Q ss_pred CCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCc--cccc-cccccCCCceEEeecC
Q psy15269 305 NTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKS--RHTP-TLVTELSDVGAVSCGE 381 (1858)
Q Consensus 305 ~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~--~~~P-~~V~~l~~I~~IAcG~ 381 (1858)
+......|..... ....+|++|+||..|+++++++|+||+||.+..++.+.+.... ...+ ........|++|+||.
T Consensus 83 ~~~~~~~~~~~~~-~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~ 161 (401)
T d1a12a_ 83 TSVEGSEMVPGKV-ELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGN 161 (401)
T ss_dssp CCSTTGGGSCEEC-CCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECS
T ss_pred ccccccccccccc-ccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEEEecc
Confidence 8876665555543 4567899999999999999999999999987766655443222 2211 1222234589999999
Q ss_pred ceEEEEEcCCCEEEEEeCCCCCCCCCCCCC-----------ceeccEEeee-----cccccEEEEEecCceEEEEecCCc
Q psy15269 382 SHTLVLSQDGHTVWSMGSGNLGKLGHEDTG-----------KVTTPKVIEA-----LRKFRVRKVCAGTSFSVALTWDGL 445 (1858)
Q Consensus 382 ~HTlaLt~dG~tVysWG~N~~GQLG~g~~~-----------~~~~P~~V~~-----l~~~~Iv~IaaG~~hSlALT~dG~ 445 (1858)
.|+++++.+|+ +|+||.|.+||+|..... ....|..+.. ....+|.+|+||..|+++++++|+
T Consensus 162 ~~~~~~~~~g~-~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~ 240 (401)
T d1a12a_ 162 DHLVMLTADGD-LYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 240 (401)
T ss_dssp SEEEEEETTSC-EEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCC
T ss_pred cceeeeecCCc-ccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCCe
Confidence 99999999997 999999999999986432 1223444432 234579999999999999999999
Q ss_pred EEEEe------CCCCCCCccccccEEecCCC--CCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCe
Q psy15269 446 VFWWG------LGLRSSSISFHTPVLVTGLS--SHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPS 517 (1858)
Q Consensus 446 Vy~WG------LG~gss~~~~~~P~~V~~l~--~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~ 517 (1858)
+|.|| +|..... ....|..+..+. ...|+++++|..|+++++++|+||+||.|.+||||.+...+....|.
T Consensus 241 v~~~g~n~~g~~g~~~~~-~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~ 319 (401)
T d1a12a_ 241 VYGFGLSNYHQLGTPGTE-SCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPT 319 (401)
T ss_dssp EEEEECCTTSTTSCSSCS-CEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEE
T ss_pred Eeeecccceecccccccc-cceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccccccCCE
Confidence 99999 3333322 233444444432 35799999999999999999999999999999999998877777888
Q ss_pred eeecCCCceEEEEEecCcceEEEeecCCCCcEEeeccCcccccCCcc
Q psy15269 518 KVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHT 564 (1858)
Q Consensus 518 ~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~WG~n~~gqLg~~t 564 (1858)
.+..+. .|++|+||.+|+++++ +||+||+||.|..+|||.+.
T Consensus 320 ~i~~~~--~i~~Is~G~~hs~alt---~dG~v~~WG~n~~GQLG~G~ 361 (401)
T d1a12a_ 320 LISRLP--AVSSVACGASVGYAVT---KDGRVFAWGMGTNYQLGTGQ 361 (401)
T ss_dssp ECCSSS--SEEEEEECSSEEEEEE---TTSCEEEEECCTTSTTCSSS
T ss_pred EcCCCC--CeEEEEeeCCEEEEEe---CCCeEEEEecCCCCCCCCCC
Confidence 887765 4999999999999999 79999999999999999753
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=100.00 E-value=1.8e-31 Score=307.03 Aligned_cols=266 Identities=26% Similarity=0.381 Sum_probs=197.0
Q ss_pred CeEEEEcCCCCCCCCcCCCCCcccccccCCCCCeEEEEEcCCEEEEEecCCcEEEEccc---ccCCCCCCCCCCceeecC
Q psy15269 188 SKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLANTTIQPLPKRVPL 264 (1858)
Q Consensus 188 g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~~IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~~~~~~P~~V~~ 264 (1858)
..||+||.|..++- ...| .....+|++|+||.+|+++|+ ||+||+||.| |+|.+...
T Consensus 4 ~sv~~WG~~~~~~~-------~~~~--~~~~~~i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~~~---------- 63 (273)
T d1jtdb_ 4 TSVVAWGGNNDWGE-------ATVP--AEAQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAAT---------- 63 (273)
T ss_dssp SEEEEESSCCSSST-------TCCC--GGGSSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGG----------
T ss_pred CEEEEECCCCCCCc-------eecc--ccCCCCcEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeeecc----------
Confidence 57999998866431 1223 333457999999999999998 8999999998 55543211
Q ss_pred ccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEE
Q psy15269 265 EAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLY 344 (1858)
Q Consensus 265 ~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VY 344 (1858)
...|++|+||..|+++|+ ||++|+||.|.+||++.. ..+. ..++.|++|..|+++++ +|++|
T Consensus 64 ---~~~v~~v~~G~~~~~al~-dg~v~~wG~~~~gq~~~~--------~~~~-----~~~~~i~~~~~~~~~~~-dg~v~ 125 (273)
T d1jtdb_ 64 ---QSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVP--------AEAR-----SGVDAIAAGAWASYALK-DGKVI 125 (273)
T ss_dssp ---GSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCC--------GGGG-----SSCCEEEEETTEEEEEE-TTEEE
T ss_pred ---cccceEEecCCCceeeee-eeeeeccCCCcceeeccc--------cccc-----cceeEEeeecccccccc-cccce
Confidence 123455679999999997 899999999999998742 2221 34678999999999886 89999
Q ss_pred EEecCCCCCCCCCCCCccccccccccCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeeccc
Q psy15269 345 TWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRK 424 (1858)
Q Consensus 345 tWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~ 424 (1858)
.||.+..++.+.. ......|..++++.. ++++..+| .+|+||.+.+||++... ...
T Consensus 126 ~~g~~~~~~~~~~----------~~~~~~v~~~~~~~~-~~~~~~~g-~~~~~G~~~~g~~~~~~------------~~~ 181 (273)
T d1jtdb_ 126 AWGDDSDGQTTVP----------AEAQSGVTALDGGVY-TALAVKNG-GVIAWGDNYFGQTTVPA------------EAQ 181 (273)
T ss_dssp EEECCTTSTTSCC----------GGGGSSEEEEEECSS-EEEEEETT-EEEEEECCTTSTTSCCG------------GGS
T ss_pred ecccCCCCceeee----------ccCCceEEEEeccce-eeeeeccc-ceeEeecccCCcccccc------------ccc
Confidence 9999887765321 112234666666555 45555678 49999999999875321 123
Q ss_pred ccEEEEEecCceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCC
Q psy15269 425 FRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQC 504 (1858)
Q Consensus 425 ~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQL 504 (1858)
.+|++|+||.+|+++|+ ||+||+||.+....- +..+..+ .+|++|+||..|+++++ ||+||+||.|.+|++
T Consensus 182 ~~v~~Is~G~~h~~~l~-dG~v~~WG~n~~Gql-----~~~~~~~--~~v~~I~~G~~~~~~l~-~g~v~~WG~~~~~~~ 252 (273)
T d1jtdb_ 182 SGVDDVAGGIFHSLALK-DGKVIAWGDNRYKQT-----TVPTEAL--SGVSAIASGEWYSLALK-NGKVIAWGSSRTAPS 252 (273)
T ss_dssp SSEEEEEECSSEEEEEE-TTEEEEEECCTTSTT-----CCCGGGG--SSCCEEEECSSCEEEEE-TTEEEEESTTCCCCG
T ss_pred CCccceeccceeeEEEe-cCcEEEcCCCCCCcc-----CCCccCC--CCcEEEEeCcceEEEEE-CCEEEEECCCCCCCC
Confidence 46999999999999998 799999994432211 1112222 36999999999999996 899999999999986
Q ss_pred CCCCCCCCcccCeeeecCCCceEEEEEecCcceEEEe
Q psy15269 505 GQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYT 541 (1858)
Q Consensus 505 G~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt 541 (1858)
+.+. .+.+|.+|..|.+++.
T Consensus 253 ~~~~-----------------~~~~i~~~~~~~~al~ 272 (273)
T d1jtdb_ 253 SVQS-----------------GVSSIEAGPNAAYALK 272 (273)
T ss_dssp GGSS-----------------CEEEEEECSSCEEEEE
T ss_pred CCCC-----------------CceeEEeCcceEEEec
Confidence 5432 3789999999999884
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.97 E-value=1.1e-30 Score=300.53 Aligned_cols=250 Identities=24% Similarity=0.323 Sum_probs=185.5
Q ss_pred CcEEEEcccccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeec
Q psy15269 238 GGLLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMG 317 (1858)
Q Consensus 238 G~VyawG~NqLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~ 317 (1858)
-+||+||.+..+. ..+.|..+ ...|.+|+||..|+++|+ ||+||+||.|.+||||.+...
T Consensus 4 ~sv~~WG~~~~~~----~~~~~~~~-----~~~i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~~~---------- 63 (273)
T d1jtdb_ 4 TSVVAWGGNNDWG----EATVPAEA-----QSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAAT---------- 63 (273)
T ss_dssp SEEEEESSCCSSS----TTCCCGGG-----SSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGG----------
T ss_pred CEEEEECCCCCCC----ceeccccC-----CCCcEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeeecc----------
Confidence 3699999763321 11122222 234777889999999998 899999999999999975432
Q ss_pred CCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCceEEeecCceEEEEEcCCCEEEEE
Q psy15269 318 GLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSM 397 (1858)
Q Consensus 318 ~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysW 397 (1858)
...|++|+||..|+++|+ +|++|+||.|.+||++. |..+ ...+..|+++..|+++++ +| .+|.|
T Consensus 64 ---~~~v~~v~~G~~~~~al~-dg~v~~wG~~~~gq~~~--------~~~~--~~~~~~i~~~~~~~~~~~-dg-~v~~~ 127 (273)
T d1jtdb_ 64 ---QSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV--------PAEA--RSGVDAIAAGAWASYALK-DG-KVIAW 127 (273)
T ss_dssp ---GSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------CGGG--GSSCCEEEEETTEEEEEE-TT-EEEEE
T ss_pred ---cccceEEecCCCceeeee-eeeeeccCCCcceeecc--------cccc--ccceeEEeeecccccccc-cc-cceec
Confidence 235789999999999997 89999999999999864 2222 245889999999999886 78 59999
Q ss_pred eCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEE
Q psy15269 398 GSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDV 477 (1858)
Q Consensus 398 G~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~I 477 (1858)
|.+..++.+... .....|+.++++. |+++++++|.+|+||.+.... ..++.....+|++|
T Consensus 128 g~~~~~~~~~~~------------~~~~~v~~~~~~~-~~~~~~~~g~~~~~G~~~~g~-------~~~~~~~~~~v~~I 187 (273)
T d1jtdb_ 128 GDDSDGQTTVPA------------EAQSGVTALDGGV-YTALAVKNGGVIAWGDNYFGQ-------TTVPAEAQSGVDDV 187 (273)
T ss_dssp ECCTTSTTSCCG------------GGGSSEEEEEECS-SEEEEEETTEEEEEECCTTST-------TSCCGGGSSSEEEE
T ss_pred ccCCCCceeeec------------cCCceEEEEeccc-eeeeeecccceeEeecccCCc-------ccccccccCCccce
Confidence 999887754321 1123466666655 455556689999999432211 11122224589999
Q ss_pred EEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEeeccCcc
Q psy15269 478 SIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAFTPLC 557 (1858)
Q Consensus 478 a~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~WG~n~~ 557 (1858)
+||.+|+++|+ ||+||+||.|.+||+|... ..+. .|++|+||..|+++++ ||+||+||.+..
T Consensus 188 s~G~~h~~~l~-dG~v~~WG~n~~Gql~~~~-----------~~~~--~v~~I~~G~~~~~~l~----~g~v~~WG~~~~ 249 (273)
T d1jtdb_ 188 AGGIFHSLALK-DGKVIAWGDNRYKQTTVPT-----------EALS--GVSAIASGEWYSLALK----NGKVIAWGSSRT 249 (273)
T ss_dssp EECSSEEEEEE-TTEEEEEECCTTSTTCCCG-----------GGGS--SCCEEEECSSCEEEEE----TTEEEEESTTCC
T ss_pred eccceeeEEEe-cCcEEEcCCCCCCccCCCc-----------cCCC--CcEEEEeCcceEEEEE----CCEEEEECCCCC
Confidence 99999999998 8999999999999998642 1122 3789999999999884 799999999877
Q ss_pred cccC
Q psy15269 558 VDVR 561 (1858)
Q Consensus 558 gqLg 561 (1858)
++++
T Consensus 250 ~~~~ 253 (273)
T d1jtdb_ 250 APSS 253 (273)
T ss_dssp CCGG
T ss_pred CCCC
Confidence 6543
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=9.4e-27 Score=249.09 Aligned_cols=150 Identities=22% Similarity=0.350 Sum_probs=136.2
Q ss_pred EEEEEEECCh-hhHHHHHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCC
Q psy15269 1060 VKQYLIRTPK-SQKIVNLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGK 1135 (1858)
Q Consensus 1060 I~Q~~~~v~~-~~Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~ 1135 (1858)
|+|+|+.|++ +.|+..|.++++. .|+||||+|++.++.+++.|+..|+++..+||+|+ +.+|..++++|++|+
T Consensus 1 I~q~~~~v~~~e~K~~~L~~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~---~~~r~~~l~~f~~~~ 77 (162)
T d1fuka_ 1 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLP---QQERDTIMKEFRSGS 77 (162)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSC---HHHHHHHHHHHHTTS
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHhCCCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCc---hhhHHHHHHHHhhcc
Confidence 6899999965 4588888888764 89999999999999999999999999999999999 999999999999999
Q ss_pred CcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCCCCCCC
Q psy15269 1136 SSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTH 1209 (1858)
Q Consensus 1136 ~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~ 1209 (1858)
.+||||||+++||||+++|++|||||+|++++.|+||+ +| .|.+++|+++ .|...++.|++.++...+++|.+
T Consensus 78 ~~iLv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~-~d~~~~~~i~~~~~~~~~~ip~~ 156 (162)
T d1fuka_ 78 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTN-EDVGAMRELEKFYSTQIEELPSD 156 (162)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEET-TTHHHHHHHHHHSSCCCEECCSC
T ss_pred cceeeccccccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEcCH-HHHHHHHHHHHHHcCcCCCCChH
Confidence 99999999999999999999999999999999999999 22 2279999998 89999999999999999999986
Q ss_pred cccc
Q psy15269 1210 PHAN 1213 (1858)
Q Consensus 1210 ~~~~ 1213 (1858)
+.+.
T Consensus 157 ~~~l 160 (162)
T d1fuka_ 157 IATL 160 (162)
T ss_dssp CTTT
T ss_pred HHHh
Confidence 6543
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=5.3e-26 Score=244.64 Aligned_cols=151 Identities=21% Similarity=0.337 Sum_probs=137.9
Q ss_pred CcccEEEEEEECChh-hHHHHHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHH
Q psy15269 1056 SVHLVKQYLIRTPKS-QKIVNLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLF 1131 (1858)
Q Consensus 1056 ~~~~I~Q~~~~v~~~-~Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~F 1131 (1858)
+..+|+|+|+.|++. +|+..|.++++. .++||||++++.++.+++.|+..|+++..+||+++ +.+|..++++|
T Consensus 4 tl~~i~q~~v~v~~~~~K~~~L~~ll~~~~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~r~~~~~~f 80 (168)
T d2j0sa2 4 TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMP---QKERESIMKEF 80 (168)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSC---HHHHHHHHHHH
T ss_pred CCCCcEEEEEEecChHHHHHHHHHHHHhCCCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhh---HHHHHHHHHHH
Confidence 446799999999875 598988888764 89999999999999999999999999999999999 99999999999
Q ss_pred hcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cCc-ceEEEEecCcccHHHHHHHHHHHhhcCCC
Q psy15269 1132 NTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AGH-KEAIAFYDPVADIGLASSLIKLLEYSNKH 1205 (1858)
Q Consensus 1132 r~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag~-~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ 1205 (1858)
++|+.+||||||+++||||+|+|++|||||+|++++.|+||+ +|+ |.+++|+++ .|...++.|++.++...++
T Consensus 81 k~g~~~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~-~d~~~~~~i~~~~~~~i~e 159 (168)
T d2j0sa2 81 RSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDE 159 (168)
T ss_dssp HHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEG-GGHHHHHHHHHHTTCCCEE
T ss_pred hcCCccEEeccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEECH-HHHHHHHHHHHHHcCcCCC
Confidence 999999999999999999999999999999999999999999 222 389999998 8999999999999988888
Q ss_pred CCCCc
Q psy15269 1206 VPTHP 1210 (1858)
Q Consensus 1206 ip~~~ 1210 (1858)
+|...
T Consensus 160 ~p~~~ 164 (168)
T d2j0sa2 160 MPMNV 164 (168)
T ss_dssp CCSCC
T ss_pred CCcCh
Confidence 87643
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.3e-25 Score=241.91 Aligned_cols=152 Identities=16% Similarity=0.176 Sum_probs=140.7
Q ss_pred cccEEEEEEECChhhHHHHHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhc
Q psy15269 1057 VHLVKQYLIRTPKSQKIVNLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNT 1133 (1858)
Q Consensus 1057 ~~~I~Q~~~~v~~~~Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~ 1133 (1858)
..+|+|+|+.+++.+|+..|.++++. .|+||||+|++.++.++..|+..|+.+..+||+|+ +.+|.+++++|++
T Consensus 4 l~~i~q~yi~v~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~---~~~r~~~~~~f~~ 80 (171)
T d1s2ma2 4 LKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMK---QQERNKVFHEFRQ 80 (171)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSC---HHHHHHHHHHHHT
T ss_pred ccceEEEEEEcCHHHHHHHHHHHHHhCCCCceEEEEeeeehhhHhHHhhhcccccccccccccc---hhhhhhhhhhccc
Confidence 34699999999999999999998864 89999999999999999999999999999999999 9999999999999
Q ss_pred CCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc------cCcceEEEEecCcccHHHHHHHHHHHhhcCCCCC
Q psy15269 1134 GKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI------AGHKEAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207 (1858)
Q Consensus 1134 G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI------ag~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip 1207 (1858)
|+.++|||||+++||+|+|++++|||||+|++++.|+||+ +..+.+|+|+++ .|...++.|++.++.+.+++|
T Consensus 81 ~~~~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~-~e~~~~~~i~~~l~~~~~~~p 159 (171)
T d1s2ma2 81 GKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINW-NDRFNLYKIEQELGTEIAAIP 159 (171)
T ss_dssp TSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECG-GGHHHHHHHHHHHTCCCEECC
T ss_pred CccccccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEEEeCH-HHHHHHHHHHHHHCCCCCCCC
Confidence 9999999999999999999999999999999999999999 223389999999 899999999999999998888
Q ss_pred CCccc
Q psy15269 1208 THPHA 1212 (1858)
Q Consensus 1208 ~~~~~ 1212 (1858)
....+
T Consensus 160 ~~~d~ 164 (171)
T d1s2ma2 160 ATIDK 164 (171)
T ss_dssp SSCCG
T ss_pred cccch
Confidence 75443
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.92 E-value=6.3e-25 Score=232.86 Aligned_cols=145 Identities=20% Similarity=0.307 Sum_probs=135.4
Q ss_pred ccEEEEEEECChhhHHHHHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCC
Q psy15269 1058 HLVKQYLIRTPKSQKIVNLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGK 1135 (1858)
Q Consensus 1058 ~~I~Q~~~~v~~~~Kl~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~ 1135 (1858)
.+|+|+|+.|++.+|+..|.++++. .++||||+|++.|+.++..|++.|+.+..+||+++ +.+|..++++|++|+
T Consensus 2 ~nI~~~~i~v~~~~K~~~L~~ll~~~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~---~~~r~~~~~~f~~~~ 78 (155)
T d1hv8a2 2 ANIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLS---QSQREKVIRLFKQKK 78 (155)
T ss_dssp SSSEEEEEECCGGGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSC---HHHHHHHHHHHHTTS
T ss_pred CCeEEEEEEeChHHHHHHHHHHHccCCCCEEEEECchHHHHHHHhhhcccccccccccccch---hhhhhhhhhhhhccc
Confidence 4689999999999999999999976 79999999999999999999999999999999999 999999999999999
Q ss_pred CcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc---c--C-cceEEEEecCcccHHHHHHHHHHHhhcCCCC
Q psy15269 1136 SSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI---A--G-HKEAIAFYDPVADIGLASSLIKLLEYSNKHV 1206 (1858)
Q Consensus 1136 ~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI---a--g-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~i 1206 (1858)
.+||||||+++||||+|+|++|||||+|++++.|+||+ + | .+.+|+|+++ .|...++.|++.++.+.+++
T Consensus 79 ~~ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~-~d~~~~~~i~~~~~~~i~~l 154 (155)
T d1hv8a2 79 IRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINR-REYKKLRYIERAMKLKIKKL 154 (155)
T ss_dssp SSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECT-TSHHHHHHHHHHHTCCCCCB
T ss_pred ceeeeehhHHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEEEch-HHHHHHHHHHHHHCCCcccc
Confidence 99999999999999999999999999999999999998 2 2 2389999998 89999999999998876654
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.7e-24 Score=230.04 Aligned_cols=147 Identities=19% Similarity=0.304 Sum_probs=135.6
Q ss_pred EEEEEEECChhhHHHHHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCC
Q psy15269 1060 VKQYLIRTPKSQKIVNLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKS 1136 (1858)
Q Consensus 1060 I~Q~~~~v~~~~Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~ 1136 (1858)
|+|+|+.+++.+|+..|+++++. +|+||||++++.++.+++.|.+.|+++..+||+|+ +.+|..++++|++|+.
T Consensus 2 l~q~~v~~~~~~K~~~L~~ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~---~~~r~~~l~~F~~g~~ 78 (168)
T d1t5ia_ 2 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMP---QEERLSRYQQFKDFQR 78 (168)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSC---HHHHHHHHHHHHTTSC
T ss_pred cEEEEEEeChHHHHHHHHHHHHhCCCCeEEEEEeeeecchhhhhhhccccccccccccccc---hhhhhhhhhhhccccc
Confidence 68999999999999999998864 79999999999999999999999999999999999 9999999999999999
Q ss_pred cEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCCCCCCC
Q psy15269 1137 SLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTH 1209 (1858)
Q Consensus 1137 ~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~ 1209 (1858)
+||||||+++||+|+|++++|||||+|.+++.|+||+ +| .+.+|+|+++..+..+++.+++.++....++|+.
T Consensus 79 ~iLv~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~elp~~ 157 (168)
T d1t5ia_ 79 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 157 (168)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC--
T ss_pred eeeeccccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEEECchHHHHHHHHHHHHHcCCcccCCch
Confidence 9999999999999999999999999999999999998 22 2389999998667889999999999888888863
|
| >d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: SPRY domain domain: LD34464p species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.89 E-value=7e-24 Score=236.87 Aligned_cols=156 Identities=22% Similarity=0.314 Sum_probs=127.3
Q ss_pred eEecCCCceE-EEEecCCeEEEec---CCCCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeeccc------cCC
Q psy15269 1412 VSFDKEKCVC-CTVECGGQSLIHG---PGTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR------DYN 1481 (1858)
Q Consensus 1412 f~~D~~~~~~-~~~~~~~~~~~~~---~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~~------~~~ 1481 (1858)
++|||...+. +.++++|..+.+. +.+...++|+.||++|+||||++|+...++.. ..|||++.+.. ..+
T Consensus 24 ~~wn~~~~~~~~~ls~~~~~~~~~~~~~~~~~~vrgt~g~ssGk~YWEV~v~~~~~~~~-~~IGV~~~~~~~~~~~~~~~ 102 (217)
T d2fnja1 24 HSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTH-AVVGVCTADAPLHSVGYQSL 102 (217)
T ss_dssp TSEEEEEECTTEEEETTEEEEEEECCCTTEEEEEEESCCBCSSEEEEEEECCGGGCTTC-CEEEEECTTSCSEEESSCCC
T ss_pred ccCChhcCCCCEEEeCCCceEEEeCCccccCCeEEEcccccCCcEEEEEEEecCCCCCe-eEEEEEecccCcccCCcccc
Confidence 3789998777 8888888776654 33556799999999999999999987766665 56788876654 245
Q ss_pred CCCCCceeEEEeCCceeeeCCCCC---------ccCCCcCCCCEEEEEEeccCceEEEEeCCccccccccCCCCCCceeE
Q psy15269 1482 HRTTGDMWLYRAYSGNVYHSGEQT---------TMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYP 1552 (1858)
Q Consensus 1482 ~~~~~~~W~y~~~~g~~~h~~~~~---------~~~~~~~~gd~i~v~lDm~~~tl~f~~ng~~~GvAF~~l~~~~~lyP 1552 (1858)
.|.+.++|+|+.++|.+||++... .++++|..||+|||.||||+|||+|+|||+++||||++|++. +|||
T Consensus 103 ~G~~~~s~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~gDvIGV~LD~d~gtLsF~kNG~~lGvAf~~l~~~-~lyP 181 (217)
T d2fnja1 103 VGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGTLSFIVDQQYLGIAFRGLRGK-KLYP 181 (217)
T ss_dssp TTSSTTEEEEETTTTEEEESTTTSCCEESSTTCCTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECCCTTC-CBEE
T ss_pred ccCCCCcceEecCCCEEEecCCCccccccCcccccCCccCCCCEEEEEEeCCCCEEEEEECCEEeeEEEeCCCCC-eEEE
Confidence 789999999999999999998751 367899999999999999999999999999999999999654 6999
Q ss_pred EEE-EeecCCCCCeEEEEEeee
Q psy15269 1553 IVL-FYSTNANGEKVKITDMTV 1573 (1858)
Q Consensus 1553 ~Vs-~y~~~~~~~~v~~~~~~~ 1573 (1858)
+|| +|++++ |+|.-+..
T Consensus 182 ~vs~~~~~~~----v~~~~~~~ 199 (217)
T d2fnja1 182 IVSAVWGHCE----ITMRYIGG 199 (217)
T ss_dssp EEEECCTTCE----EEEEEEEE
T ss_pred EEEeccCCcE----EEEEEcCC
Confidence 999 555544 55554433
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1.7e-22 Score=222.91 Aligned_cols=132 Identities=19% Similarity=0.339 Sum_probs=116.7
Q ss_pred ccEEEEEEECChhhHHHHHHHhhc---CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC
Q psy15269 1058 HLVKQYLIRTPKSQKIVNLLSFLE---GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG 1134 (1858)
Q Consensus 1058 ~~I~Q~~~~v~~~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G 1134 (1858)
++|. |..+++.+|++.|+++|+ ..++||||+|++.|+.++..|+..|+.+..+||+++ +.+|.+++++|++|
T Consensus 5 pNi~--y~v~~~~~k~~~L~~~l~~~~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~---~~~r~~~~~~f~~g 79 (200)
T d1oywa3 5 PNIR--YMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLE---NNVRADVQEKFQRD 79 (200)
T ss_dssp TTEE--EEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSC---HHHHHHHHHHHHTT
T ss_pred CCcE--EEEEcCCcHHHHHHHHHHhcCCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCc---HHHHHHHHHHHhcc
Confidence 4564 344567788899988885 378999999999999999999999999999999999 99999999999999
Q ss_pred CCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHH
Q psy15269 1135 KSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSL 1195 (1858)
Q Consensus 1135 ~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~I 1195 (1858)
+++||||||+++||||+|+|++|||||+|.++++|+||+ +| .+.|++|+++ .|..+++.+
T Consensus 80 ~~~ilvaTd~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~-~d~~~l~~~ 145 (200)
T d1oywa3 80 DLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDP-ADMAWLRRC 145 (200)
T ss_dssp SCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECH-HHHHHHHHH
T ss_pred cceEEEecchhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEecCH-HHHHHHHhh
Confidence 999999999999999999999999999999999999999 22 2389999998 666666544
|
| >d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: SPRY domain domain: SPRY domain-containing SOCS box protein 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=4.1e-23 Score=229.94 Aligned_cols=154 Identities=20% Similarity=0.321 Sum_probs=128.1
Q ss_pred EecCCCceE-EEEecCCeEEEec--CCCCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeeccc--c----CCCC
Q psy15269 1413 SFDKEKCVC-CTVECGGQSLIHG--PGTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR--D----YNHR 1483 (1858)
Q Consensus 1413 ~~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~~--~----~~~~ 1483 (1858)
+|||..++. ++++++|+++++. +.++..++|+.|+++|+||||++|+....+.. ..|||++.+.. . ...|
T Consensus 36 ~wnp~~~~~~i~ls~g~l~~~~~~~~~~~~~v~gt~~~ssGk~YwEv~i~~~~~~~~-~~iGv~~~~~~~~~~~~~~~~G 114 (213)
T d2afja1 36 GWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTH-AVVGVATALAPLQADHYAALLG 114 (213)
T ss_dssp SSCCSSSCCSSEEETTTTEEECSSCTTTSSSEEECCCCCCSEEEEEEECCCCSSSCC-CEEEEEESSCCCSSCSSSCCCC
T ss_pred cCChhhcCCCeEEeCCCeEEEeCCccCccccEEECccccCCcEEEEEEEeccCCcce-EEEeEeecccCccccCcccccc
Confidence 589988777 9999999998876 45667899999999999999999977665544 56777766554 2 3477
Q ss_pred CCCceeEEEeCCceeeeCCCC--------CccCCCcCCCCEEEEEEeccCceEEEEeCCccccccccCCCCCCceeEEEE
Q psy15269 1484 TTGDMWLYRAYSGNVYHSGEQ--------TTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPIVL 1555 (1858)
Q Consensus 1484 ~~~~~W~y~~~~g~~~h~~~~--------~~~~~~~~~gd~i~v~lDm~~~tl~f~~ng~~~GvAF~~l~~~~~lyP~Vs 1555 (1858)
.+.++|+|....|.+||++.. ..+.++|..||+|||.||||+|+|+|+|||+++|+||+|+++. +|||+||
T Consensus 115 ~~~~s~g~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~gDvIGvaLD~d~g~i~F~kNG~~lG~af~~l~~~-~lyP~vs 193 (213)
T d2afja1 115 SNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRGLKGR-TLYPSVS 193 (213)
T ss_dssp CSCEEEEEEGGGTSTTSSSSCCSCSSSSCCSGGGGSCCSSCEEEEEETTTTEEEEESTTCSCSTTHHHHHHH-CCEEEEE
T ss_pred cccCCcccccccceEeecccccccCCcCcCccCcccCCCCEEEEEEeCCCCEEEEEECCEEeeeeEECCCCC-eEEEEEE
Confidence 899999999999999988774 2345689999999999999999999999999999999999764 6999999
Q ss_pred -EeecCCCCCeEEEEEeeecc
Q psy15269 1556 -FYSTNANGEKVKITDMTVCE 1575 (1858)
Q Consensus 1556 -~y~~~~~~~~v~~~~~~~~~ 1575 (1858)
+||++. +.+.|+|
T Consensus 194 ~~~g~~~-------~~~~~~~ 207 (213)
T d2afja1 194 AVWGQCQ-------VRIRYMG 207 (213)
T ss_dssp ECCTTSC-------CEEEEES
T ss_pred EecCCcE-------EEEEECc
Confidence 789888 5555654
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.84 E-value=8.3e-21 Score=206.05 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=86.5
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYN 1161 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyD 1161 (1858)
..++||||+|++.++.++..|++.|+++..+||+|+ |.+|.+++++||+|+++||||||+++||||+|+|++|||||
T Consensus 31 ~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~---~~eR~~~l~~Fr~g~~~vLVaTdv~~rGiDip~v~~VI~~d 107 (181)
T d1t5la2 31 NERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIK---TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILD 107 (181)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCC---HHHHHHHHHHHHHTSCSEEEESCCCSSSCCCTTEEEEEETT
T ss_pred CCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCcc---HHHHHHHHHHHHCCCCCEEEehhHHHccCCCCCCCEEEEec
Confidence 379999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCC-----Chhhhhhhc
Q psy15269 1162 LPL-----SINHYVFQI 1173 (1858)
Q Consensus 1162 lP~-----~~e~YIHRI 1173 (1858)
+|. +.++|+||+
T Consensus 108 ~p~~~~~~s~~~yi~R~ 124 (181)
T d1t5la2 108 ADKEGFLRSERSLIQTI 124 (181)
T ss_dssp TTSCSGGGSHHHHHHHH
T ss_pred CCcccccccHHHHHHHH
Confidence 996 578999999
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.82 E-value=4.6e-20 Score=198.12 Aligned_cols=110 Identities=18% Similarity=0.162 Sum_probs=94.6
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYN 1161 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyD 1161 (1858)
+.++||||+|++.|+.+++.|++.|+++..+||+|+ |.+|.+++++|++|+++||||||+++||||+|+|++|||||
T Consensus 31 g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~---~~eR~~~l~~F~~G~~~vLVaT~v~~~GiDip~V~~Vi~~~ 107 (174)
T d1c4oa2 31 GERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELD---AFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILD 107 (174)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCC---HHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETT
T ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccc---hHHHHHHHHHHHCCCeEEEEeeeeeeeeccCCCCcEEEEec
Confidence 479999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCC-----Chhhhhhhc---cC--cceEEEEecCcccHHHHHHH
Q psy15269 1162 LPL-----SINHYVFQI---AG--HKEAIAFYDPVADIGLASSL 1195 (1858)
Q Consensus 1162 lP~-----~~e~YIHRI---ag--~~~aitfvt~~~e~~~l~~I 1195 (1858)
+|. +.++|+||+ ++ ++.++.+... .+..+.+.+
T Consensus 108 ~~~~~~~~~~~~~iq~~GR~gR~~~g~~~~~~~~-~~~~~~~~i 150 (174)
T d1c4oa2 108 ADKEGFLRSERSLIQTIGRAARNARGEVWLYADR-VSEAMQRAI 150 (174)
T ss_dssp TTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSS-CCHHHHHHH
T ss_pred cccccccchhHHHHHHhhhhhhcCCCeeEEeecC-CCHHHHHHH
Confidence 765 558899999 22 2355656554 443333333
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.68 E-value=1.3e-17 Score=173.09 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=86.0
Q ss_pred HhhcCCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceE
Q psy15269 1078 SFLEGKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQV 1157 (1858)
Q Consensus 1078 ~lL~~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~V 1157 (1858)
+..+.+++||||+|++.|+.|++.|++.|+++..+||+|+ ++ +|++|+.+||||||+++|||| ++|++|
T Consensus 31 ~~~~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~---~~-------~~~~~~~~vlvaTd~~~~GiD-~~v~~V 99 (138)
T d1jr6a_ 31 EVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLD---VS-------VIPTNGDVVVVATDALMTGFT-GDFDSV 99 (138)
T ss_dssp HHHTTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCC---SC-------CCTTSSCEEEEESSSSCSSSC-CCBSEE
T ss_pred hhcCCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccch---hh-------hhhhhhcceeehhHHHHhccc-cccceE
Confidence 4445689999999999999999999999999999999998 54 379999999999999999999 999999
Q ss_pred EEcC----CCCChhhhhhhc--cCcc--eEEEEecC
Q psy15269 1158 IIYN----LPLSINHYVFQI--AGHK--EAIAFYDP 1185 (1858)
Q Consensus 1158 INyD----lP~~~e~YIHRI--ag~~--~aitfvt~ 1185 (1858)
|||| +|.++++|+||+ +|++ -.++|++|
T Consensus 100 i~~~~~~~~P~~~~~y~qr~GR~gRg~~G~~~~i~~ 135 (138)
T d1jr6a_ 100 IDCNTSDGKPQDAVSRTQRRGRTGRGKPGIYRFVAP 135 (138)
T ss_dssp EECSEETTEECCHHHHHHHHTTBCSSSCEEEEECCS
T ss_pred EEEEecCCCCCCHHHHHhHhccccCCCCcEEEEEcC
Confidence 9865 699999999999 3334 56888888
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.62 E-value=2.8e-16 Score=181.12 Aligned_cols=105 Identities=16% Similarity=0.224 Sum_probs=92.8
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCC-----ccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcce
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTS-----WSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQ 1156 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~-----~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~ 1156 (1858)
..++||||+++..++.+++.|.+.|+++..+||.... +.+.+|..++++|++|+++||||||++++|||+|+|++
T Consensus 161 ~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~vLv~T~~~~~Gld~~~~~~ 240 (286)
T d1wp9a2 161 NSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDL 240 (286)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCE
T ss_pred CCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCcEEEEccceeccccCCCCCE
Confidence 3799999999999999999999999999999885321 22778999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhhhhccC---c--ceEEEEecCc
Q psy15269 1157 VIIYNLPLSINHYVFQIAG---H--KEAIAFYDPV 1186 (1858)
Q Consensus 1157 VINyDlP~~~e~YIHRIag---~--~~aitfvt~~ 1186 (1858)
|||||+|+++..|+||+|+ + +.++.|+++.
T Consensus 241 Vi~~d~~~~~~~~~Qr~GR~gR~~~~~~~~l~~~~ 275 (286)
T d1wp9a2 241 VVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKG 275 (286)
T ss_dssp EEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEETT
T ss_pred EEEeCCCCCHHHHHHHHHhCCCCCCCEEEEEEeCC
Confidence 9999999999999999932 2 2788898873
|
| >d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: SPRY domain domain: Similar to Ret finger protein-like 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.3e-14 Score=157.84 Aligned_cols=155 Identities=14% Similarity=0.178 Sum_probs=109.9
Q ss_pred eeEecCCCceE-EEEecCCeEEEecCCC------------CceEEecccccCceEEEEEEEEeecCCCcceEEEEEeecc
Q psy15269 1411 SVSFDKEKCVC-CTVECGGQSLIHGPGT------------RGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPI 1477 (1858)
Q Consensus 1411 ~f~~D~~~~~~-~~~~~~~~~~~~~~~~------------~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~ 1477 (1858)
++++||+++|. +++++|+.+|+++... ...+||+++|++|+||||+++. +...-.||||...+
T Consensus 11 dvtLDp~TAh~~L~lS~d~~~V~~~~~~~~~p~~p~rF~~~~~VLg~~~fssGrHYWEV~V~----~~~~w~vGV~~~sv 86 (188)
T d2fbea1 11 DMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVG----TSQVWDVGVCKESV 86 (188)
T ss_dssp CCCEETTTCCTTEEECTTSSEEEECSSCCCCCCCTTSCSSSCEEEESCCBSSSEEEEEEECT----TCSEEEEEEEETTS
T ss_pred eeEcCCCCCCCCEEEccCCcEEEECCcCCCCCCCcccccceeeccccccccCCCEEEEEEee----eCCeEEEEEEeCCc
Confidence 36899999999 9999999999986632 2349999999999999999763 33346899999999
Q ss_pred c---cCCCCCCCceeEEEeCCceee--eCCCCCccCCCcCCCCEEEEEEeccCceEEEEeCCcccc--ccccCCCCCCce
Q psy15269 1478 R---DYNHRTTGDMWLYRAYSGNVY--HSGEQTTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPH--LAFQDLDTSAPL 1550 (1858)
Q Consensus 1478 ~---~~~~~~~~~~W~y~~~~g~~~--h~~~~~~~~~~~~~gd~i~v~lDm~~~tl~f~~ng~~~G--vAF~~l~~~~~l 1550 (1858)
. ...+..++.+|.+...+|..+ |++.... .+--..+.+|||.||+++|+|+|+ |-+..- -.|.+..-.++|
T Consensus 87 ~Rk~~~~~~~~~~~w~l~~~~~~~~~~~~~~~~~-l~~~~~~~rVGV~LDye~G~lSFy-n~~~~~~L~tF~~~~F~~pl 164 (188)
T d2fbea1 87 NRQGKIELSSEHGFLTVGCREGKVFAASTVPMTP-LWVSPQLHRVGIFLDVGMRSIAFY-NVSDGCHIYTFIEIPVCEPW 164 (188)
T ss_dssp CCSSCCCCCTTTTEEEEEEETTTEEEECSSSCEE-ECCCTTCCEEEEEEETTTTEEEEE-ETTTTEEEEEECSCCCSSCE
T ss_pred CcCcccccCCCCCCEEEEecCCcEEEecCCCcee-eccCCCCCEEEEEEEcCCCEEEEE-eCCCCcEEEEECCCCCCCCE
Confidence 7 334446667897666666665 5555422 222246799999999999999997 322211 345544334479
Q ss_pred eEEEEEee-cCCCCCeEEEEEe
Q psy15269 1551 YPIVLFYS-TNANGEKVKITDM 1571 (1858)
Q Consensus 1551 yP~Vs~y~-~~~~~~~v~~~~~ 1571 (1858)
||+++++. +..++..++|++|
T Consensus 165 ~P~F~~~~~~~~~~~~L~IC~v 186 (188)
T d2fbea1 165 RPFFAHKRGSQDDQSILSICSV 186 (188)
T ss_dssp EEEEEEECSSSSCCCCEEECCC
T ss_pred eCeEECcCCCCCCCCceEEcCc
Confidence 99999853 3333555666654
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.55 E-value=5.4e-17 Score=183.77 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=84.1
Q ss_pred hhhHHHHHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEec----
Q psy15269 1069 KSQKIVNLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMT---- 1142 (1858)
Q Consensus 1069 ~~~Kl~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVAT---- 1142 (1858)
..+|+..|..+++. .++||||+|++.|++++++|++. +||+++ +.+|.+++++|++|+++|||||
T Consensus 10 ~~~~~~~l~~~l~~~~~~~iif~~~~~~~~~l~~~l~~~------~hg~~~---~~~R~~~~~~f~~g~~~vLVaT~a~~ 80 (248)
T d1gkub2 10 NDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNK------FRIGIV---TATKKGDYEKFVEGEIDHLIGTAHYY 80 (248)
T ss_dssp SCCCTTTTHHHHTTSCSCEEEEESSHHHHHHHHHTTTTS------SCEEEC---TTSSSHHHHHHHHTSCSEEEEECC--
T ss_pred CchHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh------ccCCCC---HHHHHHHHHHHHhCCCeEEEEecccc
Confidence 35566666666664 78999999999999999999864 799999 9999999999999999999999
Q ss_pred cccccCCCCCC-cceEEEcCCCCChhhhhhhccCcc------eEEEEecC
Q psy15269 1143 LSDFIGNDFTN-VEQVIIYNLPLSINHYVFQIAGHK------EAIAFYDP 1185 (1858)
Q Consensus 1143 DVAARGLDIp~-V~~VINyDlP~~~e~YIHRIag~~------~aitfvt~ 1185 (1858)
|+++||||+|+ |++|||||+|+ |+||+++.+ .++.++.+
T Consensus 81 ~v~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~~~~~~~~~ 126 (248)
T d1gkub2 81 GTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLY 126 (248)
T ss_dssp ----CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHHHHHHHHTTT
T ss_pred chhhhccCccccccEEEEeCCCc----chhhhhhhhccCcceEeeeeccH
Confidence 99999999996 99999999994 999882222 45555554
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.46 E-value=9.3e-15 Score=166.48 Aligned_cols=92 Identities=13% Similarity=0.070 Sum_probs=82.9
Q ss_pred hhcCCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHH----------HHHHHHHhcCCCcEEEecccccc-
Q psy15269 1079 FLEGKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVEC----------LELLNLFNTGKSSLVIMTLSDFI- 1147 (1858)
Q Consensus 1079 lL~~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR----------~~~L~~Fr~G~~~ILVATDVAAR- 1147 (1858)
.++.+|+||||+||+.|++++..|++.|+++..+||+++ |+.| ..++++|++|+.+++|+||+++|
T Consensus 33 ~~kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hggls---q~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g 109 (299)
T d1a1va2 33 VIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLD---VSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQ 109 (299)
T ss_dssp HHHSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSC---GGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEEEE
T ss_pred hhcCCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCch---HHHHHhccchHHHHHHHHHHHhcCCCcEEEEEeehhcc
Confidence 345789999999999999999999999999999999999 8877 56889999999999999999999
Q ss_pred --CCCCCCcceEEEcCCCCChhhhhhhc
Q psy15269 1148 --GNDFTNVEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1148 --GLDIp~V~~VINyDlP~~~e~YIHRI 1173 (1858)
|+|++.|.+|||||+|.++++|+||+
T Consensus 110 ~~giDid~V~~VI~~d~P~SvesyIQRi 137 (299)
T d1a1va2 110 TVDFSLDPTFTIETTTLPQDAVSRTQRR 137 (299)
T ss_dssp EEECCCSSSCEEEEEEEECBHHHHHHHH
T ss_pred CCCCCCCcceEEEeCCCCCCHHHHHhhc
Confidence 67888888999999999999999999
|
| >d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: SPRY domain domain: 52 kDa Ro protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=7.9e-13 Score=142.55 Aligned_cols=144 Identities=16% Similarity=0.220 Sum_probs=104.5
Q ss_pred eEecCCCceE-EEEecCCeEEEecCC------------CCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeeccc
Q psy15269 1412 VSFDKEKCVC-CTVECGGQSLIHGPG------------TRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR 1478 (1858)
Q Consensus 1412 f~~D~~~~~~-~~~~~~~~~~~~~~~------------~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~~ 1478 (1858)
++|||+++|+ +++++|+.+|++... ....+||+++|++|.||||+++ ++...-.||||...+.
T Consensus 3 lTLDp~TAh~~L~lS~d~~~V~~~~~~~~~p~~p~RF~~~~~VLg~~~f~sG~HYWEVeV----~~~~~w~vGV~~~s~~ 78 (179)
T d2iwgb1 3 ITLDPDTANPWLILSEDRRQVRLGDTQQSIPGNEERFDSYPMVLGAQHFHSGKHYWEVDV----TGKEAWDLGVCRDSVR 78 (179)
T ss_dssp CCBCTTTCCTTEEECTTSCEEEECSSCCCCCCCTTSCCSSSCEEBSCCBSSSEEEEEEEC----TTCSCEEEEEEETTCC
T ss_pred eEECCCcCCCCEEEcCCCCEEEECCcCcCCCCCcccccccccccccccccCCCEEEEEEE----eeCCeEEEEEEcCccC
Confidence 6899999999 999999999998653 2347999999999999999987 2334478999999988
Q ss_pred ---cCCCCCCCceeEEEeCCceee--eCCCCCccCCCcCCCCEEEEEEeccCceEEEEe-CC-ccccccccCCCCCCcee
Q psy15269 1479 ---DYNHRTTGDMWLYRAYSGNVY--HSGEQTTMLPSFTQGDYITVVLDMDAQTLSFGK-NG-EEPHLAFQDLDTSAPLY 1551 (1858)
Q Consensus 1479 ---~~~~~~~~~~W~y~~~~g~~~--h~~~~~~~~~~~~~gd~i~v~lDm~~~tl~f~~-ng-~~~GvAF~~l~~~~~ly 1551 (1858)
...++.++.+|...-.++..| |++....-.. -..+.+|||.||+++|+|+|+= .+ ..+=-.|.+..=.++||
T Consensus 79 Rk~~~~~~~~~~~W~l~~~~~~~~~~~~~~~~~l~~-~~~~~riGV~LD~e~G~lsFy~v~~~~~li~tf~~~~F~~pl~ 157 (179)
T d2iwgb1 79 RKGHFLLSSKSGFWTIWLWNKQKYEAGTYPQTPLHL-QVPPCQVGIFLDYEAGMVSFYNITDHGSLIYSFSECAFTGPLR 157 (179)
T ss_dssp CSSCCCCCTTTTEEEEEEETTTEEEECCSSCEEECC-SSCCSEEEEEEETTTTEEEEEETTTTTEEEEEECCCCCCSCEE
T ss_pred cCcccccCCCCCEEEEEEeCCceEEEecCCCEeEcc-ccCccEEEEEEecCCCEEEEEeCCCCCeEEEEeCCcCCCCCeE
Confidence 234567778995554555554 5554422222 2456899999999999999992 22 23334676543344799
Q ss_pred EEEEEeecC
Q psy15269 1552 PIVLFYSTN 1560 (1858)
Q Consensus 1552 P~Vs~y~~~ 1560 (1858)
|+.+++...
T Consensus 158 P~F~~~~~~ 166 (179)
T d2iwgb1 158 PFFSPGFND 166 (179)
T ss_dssp EEEECCCCT
T ss_pred CeEECccCC
Confidence 999975443
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=6.4e-14 Score=156.17 Aligned_cols=151 Identities=16% Similarity=0.094 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+.+++|+++.|++.. ....+.++.|+|+||.|+-..+..+..+..+ +...+.||....
T Consensus 69 layllPil~~l~~~~-----------~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i-----------~~~~~~g~~~~~ 126 (222)
T d2j0sa1 69 ATFSISVLQCLDIQV-----------RETQALILAPTRELAVQIQKGLLALGDYMNV-----------QCHACIGGTNVG 126 (222)
T ss_dssp HHHHHHHHHTCCTTS-----------CSCCEEEECSSHHHHHHHHHHHHHHTTTTTC-----------CEEEECTTSCHH
T ss_pred hhhcccccccccccc-----------cCceeEEecchHHHHHHHHHHHHHHhCccce-----------eEEEEeecccch
Confidence 446777776654321 2234689999999999999999888877766 457789999989
Q ss_pred hhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRA 998 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQ 998 (1858)
.+...++.+.+++++||+++++ ..+.........+|+||||+ |+++||.++ +..|++.+|+.||
T Consensus 127 ~~~~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~----------ll~~~f~~~----i~~I~~~l~~~~Q 192 (222)
T d2j0sa1 127 EDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE----------MLNKGFKEQ----IYDVYRYLPPATQ 192 (222)
T ss_dssp HHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH----------HTSTTTHHH----HHHHHTTSCTTCE
T ss_pred hhHHHhccCCeEEeCCCCcHHhcccccccccccceeeeecchhH----------hhhcCcHHH----HHHHHHhCCCCCE
Confidence 9999999999999999999986 34445556677788888877 999999999 9999999999999
Q ss_pred HHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEc
Q psy15269 999 ELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVK 1053 (1858)
Q Consensus 999 tLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~ 1053 (1858)
+++| |||+|++++++++++|+||+.|.|+
T Consensus 193 ~ilf--------------------------SAT~~~~v~~l~~~~l~~Pv~I~V~ 221 (222)
T d2j0sa1 193 VVLI--------------------------SATLPHEILEMTNKFMTDPIRILVK 221 (222)
T ss_dssp EEEE--------------------------ESCCCHHHHTTGGGTCSSCEEECCC
T ss_pred EEEE--------------------------EEeCCHHHHHHHHHHCCCCEEEEEe
Confidence 9999 9999999999999999999999875
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.27 E-value=3.8e-13 Score=147.81 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=86.2
Q ss_pred CcEEEEecChHH--------HHHHHHHHhhC---CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCC
Q psy15269 1083 KRSLIFVKTYRD--------ASRIISAVQDS---NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDF 1151 (1858)
Q Consensus 1083 ~k~IIFvnTk~~--------ad~L~~~L~~~---g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDI 1151 (1858)
.++.+.|+..+. +....+.|.+. ++++..+||+|+ +++|++++++|++|+++|||||+|+++|||+
T Consensus 30 ~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~---~~eke~~m~~F~~g~~~iLVaTtViE~GIDi 106 (206)
T d1gm5a4 30 GQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLS---QEEKDRVMLEFAEGRYDILVSTTVIEVGIDV 106 (206)
T ss_dssp CCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSC---CSCSHHHHHHHTTTSSSBCCCSSCCCSCSCC
T ss_pred CCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeeccc---HHHHHHHHHHHHCCCEEEEEEehhhhccccc
Confidence 677777765433 34445555442 677889999999 9999999999999999999999999999999
Q ss_pred CCcceEEEcCCCCChhhhhhhc------cC-cceEEEEecCcccHHHHHHHHHH
Q psy15269 1152 TNVEQVIIYNLPLSINHYVFQI------AG-HKEAIAFYDPVADIGLASSLIKL 1198 (1858)
Q Consensus 1152 p~V~~VINyDlP~~~e~YIHRI------ag-~~~aitfvt~~~e~~~l~~Ie~~ 1198 (1858)
|++++||+||.|..-.+|+|+. ++ ++.|+.++.+ .+....+.++.+
T Consensus 107 p~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~~-~~~~~~~rl~~~ 159 (206)
T d1gm5a4 107 PRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD-VGEEAMERLRFF 159 (206)
T ss_dssp TTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS-CCHHHHHHHHHH
T ss_pred cCCcEEEEEccCCccHHHHHhhhhheeeccccceeEeeecc-ccccchhhhhhc
Confidence 9999999999999988898875 22 2278888876 444555555444
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.27 E-value=9e-13 Score=143.85 Aligned_cols=95 Identities=21% Similarity=0.242 Sum_probs=85.6
Q ss_pred hHHHHHHHhhc---CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccccc
Q psy15269 1071 QKIVNLLSFLE---GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFI 1147 (1858)
Q Consensus 1071 ~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAAR 1147 (1858)
.|+..|.++++ ..++||||++++.++.|++.|. +..+||+++ +.+|.+++++|++|+++|||+|+++++
T Consensus 79 ~K~~~l~~ll~~~~~~k~lvf~~~~~~~~~l~~~l~-----~~~i~g~~~---~~~R~~~l~~F~~~~~~vLv~~~~~~~ 150 (200)
T d2fwra1 79 NKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTS---REEREEILEGFRTGRFRAIVSSQVLDE 150 (200)
T ss_dssp HHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSC---SHHHHTHHHHHHHSSCSBCBCSSCCCS
T ss_pred HHHHHHHHHHHhCCCCcEEEEeCcHHHHHHHHhhcC-----cceeeCCCC---HHHHHHHHHHhhcCCeeeeeecchhhc
Confidence 46666666654 4799999999999999998874 345799999 999999999999999999999999999
Q ss_pred CCCCCCcceEEEcCCCCChhhhhhhc
Q psy15269 1148 GNDFTNVEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1148 GLDIp~V~~VINyDlP~~~e~YIHRI 1173 (1858)
|+|+|.+++||+||.|+++..|+||+
T Consensus 151 Gidl~~~~~vi~~~~~~s~~~~~Q~i 176 (200)
T d2fwra1 151 GIDVPDANVGVIMSGSGSAREYIQRL 176 (200)
T ss_dssp SSCSCCBSEEEEECCSSCCHHHHHHH
T ss_pred ccCCCCCCEEEEeCCCCCHHHHHHHH
Confidence 99999999999999999999999998
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.22 E-value=6.3e-12 Score=137.75 Aligned_cols=107 Identities=16% Similarity=0.162 Sum_probs=89.0
Q ss_pred HHHhhc-CCcEEEEecChHHHHHHHHHHhhCC------------------------------CeEEEEecCCCCccHHHH
Q psy15269 1076 LLSFLE-GKRSLIFVKTYRDASRIISAVQDSN------------------------------MMTIPMSNNGTSWSHVEC 1124 (1858)
Q Consensus 1076 Ll~lL~-~~k~IIFvnTk~~ad~L~~~L~~~g------------------------------~~~~~LHG~ms~~~Q~eR 1124 (1858)
+.+.++ +.++||||+||+.|+.++..|.+.. ..+..+||+|+ +.+|
T Consensus 33 ~~~~i~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~---~~~r 109 (201)
T d2p6ra4 33 VEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLL---NGQR 109 (201)
T ss_dssp HHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSC---HHHH
T ss_pred HHHHHHcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhh---hhhH
Confidence 344454 4789999999999998888876410 11678899999 9999
Q ss_pred HHHHHHHhcCCCcEEEeccccccCCCCCCcceEEE-------cCCCCChhhhhhhc--cCc-c-----eEEEEecC
Q psy15269 1125 LELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVII-------YNLPLSINHYVFQI--AGH-K-----EAIAFYDP 1185 (1858)
Q Consensus 1125 ~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VIN-------yDlP~~~e~YIHRI--ag~-~-----~aitfvt~ 1185 (1858)
..+.+.|++|.++|||||+.+++|||+|.+++||. ++.|.++.+|+||+ ||+ + .++.++.+
T Consensus 110 ~~ie~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~ 185 (201)
T d2p6ra4 110 RVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGK 185 (201)
T ss_dssp HHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCG
T ss_pred HHHHHHHhCCCceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCC
Confidence 99999999999999999999999999999999996 88999999999998 332 2 46666665
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.11 E-value=3.3e-11 Score=137.82 Aligned_cols=84 Identities=17% Similarity=0.210 Sum_probs=72.3
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcce-----
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQ----- 1156 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~----- 1156 (1858)
.+++||||++++.++.+++.|++.|+.+..+||++. +..| ..|++|+.+++||||++++|+|++ +++
T Consensus 178 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~---~~~~----~~~~~~~~~~lvaT~~~~~G~~~~-~~~Vi~~~ 249 (305)
T d2bmfa2 178 KGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTF---DSEY----IKTRTNDWDFVVTTDISEMGANFK-AERVIDPR 249 (305)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCH---HHHG----GGGGTSCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred CCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcCh---HHHH----hhhhccchhhhhhhHHHHhcCCCC-ccEEEEcC
Confidence 488999999999999999999999999999999987 5544 468999999999999999999994 444
Q ss_pred -----EEEcCCC----------CChhhhhhhc
Q psy15269 1157 -----VIIYNLP----------LSINHYVFQI 1173 (1858)
Q Consensus 1157 -----VINyDlP----------~~~e~YIHRI 1173 (1858)
+++||.| -+..+|+||+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~ 281 (305)
T d2bmfa2 250 RCMKPVILTDGEERVILAGPMPVTHSSAAQRR 281 (305)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHH
T ss_pred CceeeeEecCCCCceEEeccccCCHHHHhhhh
Confidence 4566655 4678999999
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=9e-12 Score=136.85 Aligned_cols=150 Identities=19% Similarity=0.126 Sum_probs=119.7
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.+.+++|+|..++. . .....+.++-|+|+||.|+-+.+..+...... +......||...
T Consensus 54 TlayllP~l~~~~~---~--------~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~----------~~~~~~~g~~~~ 112 (206)
T d1veca_ 54 SGAYLIPLLERLDL---K--------KDNIQAMVIVPTRELALQVSQICIQVSKHMGG----------AKVMATTGGTNL 112 (206)
T ss_dssp HHHHHHHHHHHCCT---T--------SCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS----------CCEEEECSSSCH
T ss_pred ccccccchhhcccc---c--------ccCcceEEEeecchhhHHHHHHHHHHhhcccC----------cccccccCCccH
Confidence 45677777654321 1 23345689999999999998877655443322 234567788887
Q ss_pred chhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHH
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFR 997 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~R 997 (1858)
..+...++...++++.||+++++ ..+.........+|+||||+ |+++||.++ ++.|++.+|+.|
T Consensus 113 ~~~~~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~----------ll~~~f~~~----i~~I~~~~~~~~ 178 (206)
T d1veca_ 113 RDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK----------LLSQDFVQI----MEDIILTLPKNR 178 (206)
T ss_dssp HHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH----------HTSTTTHHH----HHHHHHHSCTTC
T ss_pred HHHHHHHHhccCeEEeCCccccccccchhccccccceEEEecccc----------ccccchHHH----HHHHHHhCCCCC
Confidence 78888888899999999999996 44455566777888888888 999999999 999999999999
Q ss_pred HHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEE
Q psy15269 998 AELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMK 1050 (1858)
Q Consensus 998 QtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I 1050 (1858)
|+++| |||+|++++++++.+|++|+.|
T Consensus 179 Q~~l~--------------------------SAT~~~~v~~l~~~~l~~P~~I 205 (206)
T d1veca_ 179 QILLY--------------------------SATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp EEEEE--------------------------ESCCCHHHHHHHHHHCSSCEEE
T ss_pred EEEEE--------------------------EecCCHHHHHHHHHHCCCCEEE
Confidence 99999 9999999999999999999887
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.05 E-value=2.5e-11 Score=136.28 Aligned_cols=161 Identities=15% Similarity=0.111 Sum_probs=126.2
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.+.+++|+|+.|..-...- ...-......+.++.|+|+||.|+.+.+..+..+.|+ +...+.||...
T Consensus 72 Tlayllp~l~~l~~~~~~~--~~~~~~~~~~alil~pt~el~~q~~~~~~~~~~~~~~-----------~~~~~~g~~~~ 138 (238)
T d1wrba1 72 TAAFLIPIINHLVCQDLNQ--QRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPL-----------RSCVVYGGADT 138 (238)
T ss_dssp HHHHHHHHHHHHHTTCC--------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSC-----------CEEEECSSSCS
T ss_pred ceeeHHHHHHHHHhccccc--ccccCCCCceEEEeccchhhhcchheeeeecccCCCc-----------EEEEEeccchh
Confidence 4668888888776432111 0000123445799999999999999998888777776 55677899998
Q ss_pred chhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhH---
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVN--- 994 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lp--- 994 (1858)
..+.....++.++++.||+++.+ ..+.........+|+||||+ |+++||.++ ++.|++.++
T Consensus 139 ~~~~~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~lViDEaD~----------ll~~~f~~~----i~~Il~~~~~~~ 204 (238)
T d1wrba1 139 HSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADR----------MLDMGFEPQ----IRKIIEESNMPS 204 (238)
T ss_dssp HHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHH----------HHHTTCHHH----HHHHHHSSCCCC
T ss_pred hHHHhhcccCCceeecCHHHHHhHHccCceeccccceeeeehhhh----------hhhhccHHH----HHHHHHHhcCCC
Confidence 88888888899999999999996 33344556677788888877 999999999 999998763
Q ss_pred -HHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEc
Q psy15269 995 -KFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVK 1053 (1858)
Q Consensus 995 -k~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~ 1053 (1858)
..||+++| |||+|++++++++.+|+||++|.|+
T Consensus 205 ~~~~Q~il~--------------------------SAT~~~~v~~l~~~~~~~p~~i~vg 238 (238)
T d1wrba1 205 GINRQTLMF--------------------------SATFPKEIQKLAADFLYNYIFMTVG 238 (238)
T ss_dssp GGGCEEEEE--------------------------ESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred CCCCEEEEE--------------------------eeeCCHHHHHHHHHHCCCCEEEEeC
Confidence 46788898 9999999999999999999999874
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=2.4e-11 Score=134.69 Aligned_cols=152 Identities=16% Similarity=0.109 Sum_probs=119.5
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.+.+++|+++.++. . .....+.++-|+|+||.|+-+.+..+.....+ ....+.||...
T Consensus 63 Tlayllp~l~~i~~---~--------~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 120 (218)
T d2g9na1 63 TATFAISILQQIEL---D--------LKATQALVLAPTRELAQQIQKVVMALGDYMGA-----------SCHACIGGTNV 120 (218)
T ss_dssp HHHHHHHHHHHCCT---T--------CCSCCEEEECSSHHHHHHHHHHHHHHHTTTTC-----------CEEEECC--CC
T ss_pred hhhhhhhhhheecc---c--------ccCccEEEEcccchhhhhHHHHHhhhccccce-----------eEEeeecccch
Confidence 34566777666532 1 13344689999999999999998888877766 34566777666
Q ss_pred chhhhhhhh-hccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHH
Q psy15269 920 STAIIDIDK-FVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKF 996 (1858)
Q Consensus 920 ~~q~~dl~~-~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~ 996 (1858)
..+...... ..+++++||+++.+ ..+.........+|+||||+ |+++||.++ +..|++.+|+.
T Consensus 121 ~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEaD~----------ll~~~f~~~----~~~Il~~~~~~ 186 (218)
T d2g9na1 121 RAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE----------MLSRGFKDQ----IYDIFQKLNSN 186 (218)
T ss_dssp CSTTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHH----------HHHTTCHHH----HHHHHHHSCTT
T ss_pred hHHHHHHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEeeecch----------hhcCchHHH----HHHHHHhCCCC
Confidence 666555543 67899999999986 34445556677777888877 999999999 99999999999
Q ss_pred HHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEc
Q psy15269 997 RAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVK 1053 (1858)
Q Consensus 997 RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~ 1053 (1858)
||+++| |||+|++++++++.+|+||+.|.|+
T Consensus 187 ~Q~il~--------------------------SAT~~~~v~~~~~~~l~~pv~i~v~ 217 (218)
T d2g9na1 187 TQVVLL--------------------------SATMPSDVLEVTKKFMRDPIRILVK 217 (218)
T ss_dssp CEEEEE--------------------------ESCCCHHHHHHHHHHCSSCEEEECC
T ss_pred CeEEEE--------------------------EecCCHHHHHHHHHHCCCCEEEEEe
Confidence 999999 9999999999999999999999886
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1.5e-11 Score=135.13 Aligned_cols=152 Identities=16% Similarity=0.156 Sum_probs=122.0
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.+.+++|+++.++.- . ....+.++-|+|+||.|+...+..+....+. ++..++.||...
T Consensus 52 Tla~~lp~l~~~~~~---~--------~~~~~lil~PtreL~~qi~~~~~~~~~~~~~----------~~~~~~~g~~~~ 110 (207)
T d1t6na_ 52 TAVFVLATLQQLEPV---T--------GQVSVLVMCHTRELAFQISKEYERFSKYMPN----------VKVAVFFGGLSI 110 (207)
T ss_dssp HHHHHHHHHHHCCCC---T--------TCCCEEEECSCHHHHHHHHHHHHHHTTTSTT----------CCEEEESCCSCH
T ss_pred ccccccceeeeeccc---C--------CCceEEEEeccchhhHHHHHHHHHHHhhCCC----------ceeEEEeccccH
Confidence 345666776543221 1 2234689999999999999998877766443 355778999988
Q ss_pred chhhhhhhh-hccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhh-cCCCchhhHHHHHHHHHhHH
Q psy15269 920 STAIIDIDK-FVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQ-TALSPREKTVLEQIFSVVNK 995 (1858)
Q Consensus 920 ~~q~~dl~~-~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~-mGF~~~~~esL~~Il~~Lpk 995 (1858)
..+...+.+ ..++++.||+++++ ..+..+......+++||||+ |++ +||.++ ++.|++.+|+
T Consensus 111 ~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~----------ll~~~~~~~~----i~~I~~~~~~ 176 (207)
T d1t6na_ 111 KKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK----------MLEQLDMRRD----VQEIFRMTPH 176 (207)
T ss_dssp HHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHH----------HHSSHHHHHH----HHHHHHTSCS
T ss_pred HHHHHHHHhcCCCEEEeCcchhhhhccCCceeccccceeehhhhhh----------hhhcCCcHHH----HHHHHHhCCC
Confidence 888888865 68999999999996 33445567778888999988 776 689888 9999999999
Q ss_pred HHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEE
Q psy15269 996 FRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLV 1052 (1858)
Q Consensus 996 ~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v 1052 (1858)
.||+++| |||+|++++++++.+|+||+.|.|
T Consensus 177 ~~Q~il~--------------------------SAT~~~~v~~l~~~~l~~P~~I~V 207 (207)
T d1t6na_ 177 EKQVMMF--------------------------SATLSKEIRPVCRKFMQDPMEIFV 207 (207)
T ss_dssp SSEEEEE--------------------------ESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred CCEEEEE--------------------------eeeCCHHHHHHHHHHCCCCEEEeC
Confidence 9999999 999999999999999999998864
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.87 E-value=2.2e-10 Score=126.26 Aligned_cols=149 Identities=15% Similarity=0.111 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|++..|++- . ....+.++-|+|++|.++...+..+...... ....+.|+..+.
T Consensus 62 ~a~~lp~i~~l~~~---~--------~~~~~lil~pt~el~~q~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 119 (212)
T d1qdea_ 62 GTFSIAALQRIDTS---V--------KAPQALMLAPTRELALQIQKVVMALAFHMDI-----------KVHACIGGTSFV 119 (212)
T ss_dssp HHHHHHHHHHCCTT---C--------CSCCEEEECSSHHHHHHHHHHHHHHTTTSCC-----------CEEEECC-----
T ss_pred hhhHhhhHhhhhcc---C--------CCcceEEEcccHHHhhhhhhhhccccccccc-----------ceeeEeeccchh
Confidence 34566666655321 1 3345689999999999999998766555444 334556665555
Q ss_pred hhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRA 998 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQ 998 (1858)
.+...+ +..++++.||+++.. ..+..+......+|+||||+ |+++||.++ +++|++.+++.||
T Consensus 120 ~~~~~~-~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDEad~----------lld~~f~~~----v~~I~~~~~~~~Q 184 (212)
T d1qdea_ 120 EDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE----------MLSSGFKEQ----IYQIFTLLPPTTQ 184 (212)
T ss_dssp -----C-TTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH----------HHHTTCHHH----HHHHHHHSCTTCE
T ss_pred HHHHHh-cCCcEEEECCCccccccccCceecCcceEEeehhhhh----------hcccchHHH----HHHHHHhCCCCCe
Confidence 554444 357899999999986 44455667788888888888 999999999 9999999999999
Q ss_pred HHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEE
Q psy15269 999 ELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLV 1052 (1858)
Q Consensus 999 tLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v 1052 (1858)
+++| |||+|++++++++++|+||+.|.|
T Consensus 185 ~vl~--------------------------SAT~~~~v~~l~~~~l~~Pv~i~v 212 (212)
T d1qdea_ 185 VVLL--------------------------SATMPNDVLEVTTKFMRNPVRILV 212 (212)
T ss_dssp EEEE--------------------------ESSCCHHHHHHHHHHCSSCEEEC-
T ss_pred EEEE--------------------------EeeCCHHHHHHHHHHCCCCEEEeC
Confidence 9999 999999999999999999998864
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=2e-08 Score=109.53 Aligned_cols=123 Identities=11% Similarity=0.047 Sum_probs=97.3
Q ss_pred EEEEEEECChhhHHHHHHHhhc-CCcEEEEecChHHHHHHHHHHhh--CCCeEEEEecCCCCccHHHHHHHHHHHhcCCC
Q psy15269 1060 VKQYLIRTPKSQKIVNLLSFLE-GKRSLIFVKTYRDASRIISAVQD--SNMMTIPMSNNGTSWSHVECLELLNLFNTGKS 1136 (1858)
Q Consensus 1060 I~Q~~~~v~~~~Kl~~Ll~lL~-~~k~IIFvnTk~~ad~L~~~L~~--~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~ 1136 (1858)
|+-++..-++......+.+.+. +.|+.+.|+..+..+.+.+.+++ .++.+..+||.|+ +.+++++|.+|++|++
T Consensus 8 I~T~v~~~~~~~i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~---~~eke~im~~F~~g~~ 84 (211)
T d2eyqa5 8 VKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR---ERELERVMNDFHHQRF 84 (211)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCC---HHHHHHHHHHHHTTSC
T ss_pred eEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccC---HHHHHHHHHHHHcCCc
Confidence 4444444343333444444444 48999999999999999999987 5889999999999 9999999999999999
Q ss_pred cEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc----cCcc---eEEEEecC
Q psy15269 1137 SLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI----AGHK---EAIAFYDP 1185 (1858)
Q Consensus 1137 ~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI----ag~~---~aitfvt~ 1185 (1858)
+|||||.|...|||+|+++.+|-+|.+.---.-+|.. |+.+ .|+.++.+
T Consensus 85 ~ILv~TtvIEvGiDvpnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~~~ 140 (211)
T d2eyqa5 85 NVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 140 (211)
T ss_dssp CEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECC
T ss_pred ceEEEehhhhhccCCCCCcEEEEecchhccccccccccceeeecCccceEEEEecC
Confidence 9999999999999999999999999988666667754 3322 56666543
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.80 E-value=1.1e-08 Score=114.55 Aligned_cols=126 Identities=12% Similarity=0.111 Sum_probs=93.6
Q ss_pred hhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHHhcCC-CcEE-E
Q psy15269 1069 KSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQD-SNMMTIPMSNNGTSWSHVECLELLNLFNTGK-SSLV-I 1140 (1858)
Q Consensus 1069 ~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~-~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~-~~IL-V 1140 (1858)
...|+..|.+++. +.|+||||+.+...+.+...|.+ .|+++..+||+++ +.+|.+++++|+++. ..+| +
T Consensus 67 ~S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~---~~~R~~~i~~F~~~~~~~vll~ 143 (244)
T d1z5za1 67 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELS---KKERDDIISKFQNNPSVKFIVL 143 (244)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSC---HHHHHHHHHHHHHCTTCCEEEE
T ss_pred hhhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccc---hhccchhhhhhhccccchhccc
Confidence 3457777766664 37999999999999999999976 4899999999999 999999999998764 6666 5
Q ss_pred eccccccCCCCCCcceEEEcCCCCChhhhhhhc------cCcc--eEEEEecCc-ccHHHHHHHHH
Q psy15269 1141 MTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI------AGHK--EAIAFYDPV-ADIGLASSLIK 1197 (1858)
Q Consensus 1141 ATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI------ag~~--~aitfvt~~-~e~~~l~~Ie~ 1197 (1858)
+|.+++.|||++.+++||+||+|+++..+.|++ |.+. ..+.|+... -|..+++.+.+
T Consensus 144 ~~~~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~~Tiee~i~~~~~~ 209 (244)
T d1z5za1 144 SVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 209 (244)
T ss_dssp ECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHH
T ss_pred cccccccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEeeCCCHHHHHHHHHHH
Confidence 568999999999999999999999997666655 4433 555566652 24444444443
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.78 E-value=2.7e-10 Score=124.67 Aligned_cols=135 Identities=13% Similarity=0.057 Sum_probs=115.3
Q ss_pred CccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccc
Q psy15269 868 NSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPN 945 (1858)
Q Consensus 868 ~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~ 945 (1858)
.....++-+.++++.+...+...+.....+ +..+..||.....+...+.+..++++.||+++.+ ...
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~ 137 (206)
T d1s2ma1 69 KIQALIMVPTRELALQTSQVVRTLGKHCGI-----------SCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK 137 (206)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTC-----------CEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT
T ss_pred cccceeeccchhhhhhhhhhhhhcccccCe-----------eEEeecCccchhhHHHHhcccceEEEECCcccccccccc
Confidence 344578889999999999888776665554 5677889988888888888899999999999996 444
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
..+......+|+||||+ |.+.||.++ ++.|++.+|+.||+++|
T Consensus 138 ~~~l~~l~~lV~DEaD~----------l~~~~f~~~----v~~I~~~l~~~~Q~il~----------------------- 180 (206)
T d1s2ma1 138 VADLSDCSLFIMDEADK----------MLSRDFKTI----IEQILSFLPPTHQSLLF----------------------- 180 (206)
T ss_dssp CSCCTTCCEEEEESHHH----------HSSHHHHHH----HHHHHTTSCSSCEEEEE-----------------------
T ss_pred eeecccceEEEeechhh----------hhhhhhHHH----HHHHHHhCCCCCEEEEE-----------------------
Confidence 55566677788888887 999999999 99999999999999999
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEc
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVK 1053 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~ 1053 (1858)
|||+|+++++++++||++|+.|.+.
T Consensus 181 ---SATl~~~v~~~~~~~l~~P~~I~~~ 205 (206)
T d1s2ma1 181 ---SATFPLTVKEFMVKHLHKPYEINLM 205 (206)
T ss_dssp ---ESCCCHHHHHHHHHHCSSCEEESCC
T ss_pred ---EEeCCHHHHHHHHHHCCCCEEEEee
Confidence 9999999999999999999998764
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.76 E-value=3.1e-08 Score=116.55 Aligned_cols=129 Identities=7% Similarity=0.091 Sum_probs=101.8
Q ss_pred hhHHHHHHHhhc------CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCc---EEE
Q psy15269 1070 SQKIVNLLSFLE------GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSS---LVI 1140 (1858)
Q Consensus 1070 ~~Kl~~Ll~lL~------~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~---ILV 1140 (1858)
..|+..|..++. +.|+|||++.+...+.+.+.|++.|++...++|+++ ..+|.+++++|+++... +|+
T Consensus 100 S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~---~~~R~~~i~~F~~~~~~~~vlLl 176 (346)
T d1z3ix1 100 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMS---IKKRAKIVERFNNPSSPEFIFML 176 (346)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCC---HHHHHHHHHHHHSTTCCCCEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchh---HHHHHHHHHhhhcccccceeeee
Confidence 345555555442 379999999999999999999999999999999999 99999999999887543 688
Q ss_pred eccccccCCCCCCcceEEEcCCCCChhhhhhhc------cCcc--eEEEEecCc-ccHHHHHHHHHHHhh
Q psy15269 1141 MTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI------AGHK--EAIAFYDPV-ADIGLASSLIKLLEY 1201 (1858)
Q Consensus 1141 ATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI------ag~~--~aitfvt~~-~e~~~l~~Ie~~l~~ 1201 (1858)
+|.+++.|||+..+++||.||++++|..+.|++ |.++ ..+-|+... -|..+++.+.+...-
T Consensus 177 s~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~K~~l 246 (346)
T d1z3ix1 177 SSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKAL 246 (346)
T ss_dssp EGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHT
T ss_pred cchhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998877655 4444 456666642 344555554444443
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.75 E-value=5.5e-10 Score=122.42 Aligned_cols=134 Identities=16% Similarity=0.057 Sum_probs=111.5
Q ss_pred CccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccc
Q psy15269 868 NSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPN 945 (1858)
Q Consensus 868 ~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~ 945 (1858)
...+.++-|+|+||.++-..+..+..+... +...+.|+.....+...+ ++.++++.||+++++ ..+
T Consensus 72 ~~~~lil~pt~~l~~q~~~~~~~~~~~~~~-----------~v~~~~g~~~~~~~~~~l-~~~~IlV~TP~~l~~~l~~~ 139 (208)
T d1hv8a1 72 GIEAIILTPTRELAIQVADEIESLKGNKNL-----------KIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHINRG 139 (208)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHHCSSCC-----------CEEEECTTSCHHHHHHHH-HTCSEEEECHHHHHHHHHTT
T ss_pred CcceEEEeeccccchhhhhhhhhhcccCCe-----------EEEEeeCCCChHHHHHhc-CCCCEEEEChHHHHHHHHcC
Confidence 345789999999999999988877766555 345678887766666554 578999999999886 445
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
..+......+++||||+ |.+.+|.++ +++|++.+++.+|++++
T Consensus 140 ~~~~~~l~~lViDEad~----------l~~~~~~~~----i~~I~~~~~~~~Q~i~~----------------------- 182 (208)
T d1hv8a1 140 TLNLKNVKYFILDEADE----------MLNMGFIKD----VEKILNACNKDKRILLF----------------------- 182 (208)
T ss_dssp CSCTTSCCEEEEETHHH----------HHTTTTHHH----HHHHHHTSCSSCEEEEE-----------------------
T ss_pred CCCcccCcEEEEEChHH----------hhcCCChHH----HHHHHHhCCCCCeEEEE-----------------------
Confidence 55667777888888887 899999999 99999999999999999
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEc
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVK 1053 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~ 1053 (1858)
|||+|++++++++++|+||..|.++
T Consensus 183 ---SAT~~~~v~~~~~~~l~~~~~I~~~ 207 (208)
T d1hv8a1 183 ---SATMPREILNLAKKYMGDYSFIKAK 207 (208)
T ss_dssp ---CSSCCHHHHHHHHHHCCSEEEEECC
T ss_pred ---EccCCHHHHHHHHHHCCCCeEEEEE
Confidence 9999999999999999999998764
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.55 E-value=4.7e-09 Score=114.27 Aligned_cols=103 Identities=12% Similarity=0.004 Sum_probs=86.0
Q ss_pred ccccccccCCchhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHH
Q psy15269 910 TSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLE 987 (1858)
Q Consensus 910 s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~ 987 (1858)
...+.|+..+..+.....++.++++.||++++. .+..........+++||||+ |++.||.++ ++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDEad~----------ll~~~f~~~----v~ 169 (209)
T d1q0ua_ 104 ARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL----------MLDMGFITD----VD 169 (209)
T ss_dssp EEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH----------HHHTTCHHH----HH
T ss_pred ccccccchhhHHHHHHhccCceEEEecCchhhhhhhhhccccccceEEEEeeccc----------ccccccHHH----HH
Confidence 345556665556666677789999999999986 44445556677788888887 999999999 99
Q ss_pred HHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEE
Q psy15269 988 QIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLV 1052 (1858)
Q Consensus 988 ~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v 1052 (1858)
.|++.+|+.+|+++| |||+|++++++++++|+||+.|.|
T Consensus 170 ~I~~~~~~~~Q~il~--------------------------SATl~~~v~~l~~~~l~~p~~i~V 208 (209)
T d1q0ua_ 170 QIAARMPKDLQMLVF--------------------------SATIPEKLKPFLKKYMENPTFVHV 208 (209)
T ss_dssp HHHHTSCTTCEEEEE--------------------------ESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred HHHHHCCCCCEEEEE--------------------------EccCCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999 999999999999999999999876
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=98.42 E-value=7.9e-08 Score=110.56 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=62.7
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYN 1161 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyD 1161 (1858)
.++++|||++++.++.+++.|++.|+++..+||.+. ..++ ++|++++.+|+||||++..|||| +|.+||++.
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~---~~e~----~~~~~~~~~~~~~t~~~~~~~~~-~~~~vid~g 107 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTF---EREY----PTIKQKKPDFILATDIAEMGANL-CVERVLDCR 107 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSC---C------------CCCSEEEESSSTTCCTTC-CCSEEEECC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCc---HhHH----hhhhcCCcCEEEEechhhhceec-CceEEEecC
Confidence 578999999999999999999999999999999998 5554 35899999999999999999999 699999887
Q ss_pred CCC
Q psy15269 1162 LPL 1164 (1858)
Q Consensus 1162 lP~ 1164 (1858)
++.
T Consensus 108 ~~~ 110 (299)
T d1yksa2 108 TAF 110 (299)
T ss_dssp EEE
T ss_pred cee
Confidence 753
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=97.69 E-value=0.00022 Score=74.97 Aligned_cols=132 Identities=12% Similarity=-0.004 Sum_probs=94.4
Q ss_pred EECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEE
Q psy15269 1065 IRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLV 1139 (1858)
Q Consensus 1065 ~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~IL 1139 (1858)
++....+|..+++..+. +..++|||.|.+..+.++..|++.|++...++... .+++..+-...-..-.|.
T Consensus 12 vf~T~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~-----~~~Ea~II~~Ag~~g~Vt 86 (175)
T d1tf5a4 12 IYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKN-----HEREAQIIEEAGQKGAVT 86 (175)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSC-----HHHHHHHHTTTTSTTCEE
T ss_pred EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhh-----HHHHHHHHHhccCCCcee
Confidence 34577889998888774 37899999999999999999999999999999875 344444444444455799
Q ss_pred EeccccccCCCCCC---c-----ceEEEcCCCCChhhhhh---hccCcc---eEEEEecCcccHH---HHHHHHHHHhh
Q psy15269 1140 IMTLSDFIGNDFTN---V-----EQVIIYNLPLSINHYVF---QIAGHK---EAIAFYDPVADIG---LASSLIKLLEY 1201 (1858)
Q Consensus 1140 VATDVAARGLDIp~---V-----~~VINyDlP~~~e~YIH---RIag~~---~aitfvt~~~e~~---~l~~Ie~~l~~ 1201 (1858)
|||+.|.||.||.- | =|||--..|.+..-..| |+|++| .+..|++-.++.. .-..+.+++..
T Consensus 87 IATNmAGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD~l~~~f~~~~~~~~~~~ 165 (175)
T d1tf5a4 87 IATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAERTMAMLDR 165 (175)
T ss_dssp EEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSSGGGSSHHHHHHHHHHH
T ss_pred ehhhHHHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEEEEcCHHHHHHHhHHHHHHHHHH
Confidence 99999999999842 2 38999989998855555 556555 4555554423221 12455555543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.23 E-value=0.00038 Score=79.87 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=53.1
Q ss_pred ccceeeCCeEEEEcCCCCCCCCcCCCC----CcccccccCCCCCeEEEEEcC---CEEEEEecCCcEEEEcccccCCCCC
Q psy15269 181 TDISVAHSKVYTWGCNLHHQILDEVRG----KCSRPRLQSLPSNIRHIEAGQ---FCTFLLDSTGGLLVYGKGWLGLANT 253 (1858)
Q Consensus 181 t~~a~s~g~Vy~WGsN~~GQLG~g~~~----~~~~P~~v~~~~~IkqVA~G~---~hTlaLt~dG~VyawG~NqLGlg~~ 253 (1858)
+.+...+|+||+||.....+.+..... .+.-|..-. ...+.....+. .++.++..||++|..|.... ..
T Consensus 24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~-w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~---~~ 99 (387)
T d1k3ia3 24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI-VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA---KK 99 (387)
T ss_dssp EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC-BCCCEEEECSCCCSSCEEEECTTSCEEEECSSST---TC
T ss_pred EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCc-EeecCCCCCCcccceeEEEEecCCcEEEeecCCC---cc
Confidence 344557899999997554433222111 112222111 11222222222 24567889999999884210 00
Q ss_pred CCCCCceeecCccCcceEEE-EEecCcEEEEEeeCCcEEEEeCCCC
Q psy15269 254 TIQPLPKRVPLEAAIVSLSV-SKCSEAHVLTVTSEGEVYSWGVGEH 298 (1858)
Q Consensus 254 ~~~~~P~~V~~~~~i~~Is~-Ia~G~~HtlaLT~dG~VysWG~N~~ 298 (1858)
.....|.. .....+.. -.....|+.++..||+||.+|-...
T Consensus 100 ~~~yd~~~----~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~ 141 (387)
T d1k3ia3 100 TSLYDSSS----DSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWS 141 (387)
T ss_dssp EEEEEGGG----TEEEECCCCSSCCSSCEEEECTTSCEEEECCCCC
T ss_pred eeEecCcc----CcccccccccccccccceeeecCCceeeeccccc
Confidence 00000100 00000000 0123579999999999999997543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.04 E-value=0.0081 Score=68.39 Aligned_cols=310 Identities=13% Similarity=0.046 Sum_probs=132.6
Q ss_pred CCEEEEEecCCcEEEEcccccC-CCCCCCCCCceee-cCc-cCcceEEEEEecC---cEEEEEeeCCcEEEEeCCCCCCc
Q psy15269 228 QFCTFLLDSTGGLLVYGKGWLG-LANTTIQPLPKRV-PLE-AAIVSLSVSKCSE---AHVLTVTSEGEVYSWGVGEHGKL 301 (1858)
Q Consensus 228 ~~hTlaLt~dG~VyawG~NqLG-lg~~~~~~~P~~V-~~~-~~i~~Is~Ia~G~---~HtlaLT~dG~VysWG~N~~GQL 301 (1858)
..|..++..+|+||.+|-.... ............+ ... ..+..+....... .+..++..+|++|..|......
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~- 99 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK- 99 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC-
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcc-
Confidence 4588889999999999852111 0001000000001 111 1222222221222 3467888999999998543211
Q ss_pred CCCCCcccccceeeecCCCCCcEEEE----EecCceEEEEEeCCeEEEEecCCCCCCCCCCCC----ccccccccccCC-
Q psy15269 302 GHGNTLSQRRPKLIMGGLYGKRVTQV----SAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLK----SRHTPTLVTELS- 372 (1858)
Q Consensus 302 G~g~~~~~~~P~~V~~~l~~~~IvqV----a~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~----~~~~P~~V~~l~- 372 (1858)
.....|. ....+.+ .....|++++..||+||++|-...+.-...+.. .......+....
T Consensus 100 -----~~~yd~~-------~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 167 (387)
T d1k3ia3 100 -----TSLYDSS-------SDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV 167 (387)
T ss_dssp -----EEEEEGG-------GTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCS
T ss_pred -----eeEecCc-------cCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcc
Confidence 1111110 1111111 124579999999999999986433222221110 000111111110
Q ss_pred -------CceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecc-cccEEEEEecCceEEEEecCC
Q psy15269 373 -------DVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALR-KFRVRKVCAGTSFSVALTWDG 444 (1858)
Q Consensus 373 -------~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~-~~~Iv~IaaG~~hSlALT~dG 444 (1858)
.-..+..+....++.-.+|+ +|.+|.......-..... .......... ............+.+....+|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 244 (387)
T d1k3ia3 168 NPMLTADKQGLYRSDNHAWLFGWKKGS-VFQAGPSTAMNWYYTSGS--GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKG 244 (387)
T ss_dssp GGGCCCCTTGGGTTTCSCCEEECGGGC-EEECCSSSEEEEEECSTT--CEEEEEEECEETTEECCCCBTCEEEEEETTTT
T ss_pred cccccccccceeeccceeEEEEeCCCC-EEEecCcCCcEEecCccc--CcEeeccccccCcccCcccccccEEEeeccCC
Confidence 01111233344455566786 888774332111101111 1111111111 111111122233444445689
Q ss_pred cEEEEeCCCCCCCccccccEEe---cCCCCCC--EEEE----EEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCccc
Q psy15269 445 LVFWWGLGLRSSSISFHTPVLV---TGLSSHQ--IVDV----SIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQ 515 (1858)
Q Consensus 445 ~Vy~WGLG~gss~~~~~~P~~V---~~l~~~~--Iv~I----a~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~ 515 (1858)
++|++|-+.............+ ....... ...+ ..-..|+.++..||+||..|-+..+..+.+... ...
T Consensus 245 ~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~--~~~ 322 (387)
T d1k3ia3 245 KILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP--VFT 322 (387)
T ss_dssp EEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSB--CCC
T ss_pred ceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcE--ece
Confidence 9999992111111000000110 0000000 1111 112467788888999999998776654443221 111
Q ss_pred CeeeecCCCceEEEEE----ecCcceEEEeecCCCCcEEeeccCccc
Q psy15269 516 PSKVVGLEDVCVRQIC----AGSLFSIAYTVPPSNSALSSAFTPLCV 558 (1858)
Q Consensus 516 P~~V~~L~~~~I~~Ia----~G~~hS~alt~~~~dG~vy~WG~n~~g 558 (1858)
+. +-.....+...++ .-.+|+.++. ..||+||..|.+..+
T Consensus 323 ve-~Ydp~~~~W~~~~~~~~~R~~Hs~a~l--~~dG~v~v~GG~~~~ 366 (387)
T d1k3ia3 323 PE-IYVPEQDTFYKQNPNSIVRVYHSISLL--LPDGRVFNGGGGLCG 366 (387)
T ss_dssp CE-EEEGGGTEEEECCCCSSCCCTTEEEEE--CTTSCEEEEECCCCT
T ss_pred EE-EEECCCCeEEECCCCCCcccceEEEEE--CCCCEEEEEeCCCcC
Confidence 11 1111111222222 2346776543 279999999876443
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.55 E-value=0.017 Score=61.60 Aligned_cols=83 Identities=11% Similarity=0.076 Sum_probs=66.5
Q ss_pred EECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEE
Q psy15269 1065 IRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLV 1139 (1858)
Q Consensus 1065 ~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~IL 1139 (1858)
++....+|...++..+. +..++|.+.+....+.++..|.+.|++...|+..- .+|+..+=.=.-..-.|-
T Consensus 12 Vy~T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~-----herEAeIIAqAG~~GaVT 86 (219)
T d1nkta4 12 IYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKY-----HEQEATIIAVAGRRGGVT 86 (219)
T ss_dssp EESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSC-----HHHHHHHHHTTTSTTCEE
T ss_pred EEcCHHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhh-----HHHHHHHHHhcccCCcEE
Confidence 45678889998888765 37899999999999999999999999999999963 455554443222344689
Q ss_pred EeccccccCCCCC
Q psy15269 1140 IMTLSDFIGNDFT 1152 (1858)
Q Consensus 1140 VATDVAARGLDIp 1152 (1858)
|||+.|.||-||-
T Consensus 87 IATNMAGRGTDI~ 99 (219)
T d1nkta4 87 VATNMAGRGTDIV 99 (219)
T ss_dssp EEETTCSTTCCCC
T ss_pred eeccccCCCCcee
Confidence 9999999999983
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=89.47 E-value=0.63 Score=50.36 Aligned_cols=81 Identities=17% Similarity=0.125 Sum_probs=69.0
Q ss_pred HHHHhhc-CCcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccccc-C
Q psy15269 1075 NLLSFLE-GKRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFI-G 1148 (1858)
Q Consensus 1075 ~Ll~lL~-~~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAAR-G 1148 (1858)
.+...+. +.++++-++|.--+....+.+++ .++.+..+||..+ ..+|..++++.++|+++|+|.|-.+-. .
T Consensus 96 a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~---~~~~~~~~~~~~~g~~~iviGths~l~~~ 172 (233)
T d2eyqa3 96 AAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRS---AKEQTQILAEVAEGKIDILIGTHKLLQSD 172 (233)
T ss_dssp HHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSC---HHHHHHHHHHHHTTCCSEEEECTHHHHSC
T ss_pred HHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCccc---chhHHHHHHHHhCCCCCEEEeehhhhccC
Confidence 3334444 48999999999999998888875 5788999999999 999999999999999999999997665 6
Q ss_pred CCCCCcceEE
Q psy15269 1149 NDFTNVEQVI 1158 (1858)
Q Consensus 1149 LDIp~V~~VI 1158 (1858)
+.+.++.+||
T Consensus 173 ~~f~~LgLiI 182 (233)
T d2eyqa3 173 VKFKDLGLLI 182 (233)
T ss_dssp CCCSSEEEEE
T ss_pred Ccccccccee
Confidence 8888888877
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.16 E-value=0.59 Score=51.50 Aligned_cols=75 Identities=20% Similarity=0.118 Sum_probs=64.7
Q ss_pred cCCcEEEEecChHHHHHHHHHHh----hCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccccc-CCCCCCcc
Q psy15269 1081 EGKRSLIFVKTYRDASRIISAVQ----DSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFI-GNDFTNVE 1155 (1858)
Q Consensus 1081 ~~~k~IIFvnTk~~ad~L~~~L~----~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAAR-GLDIp~V~ 1155 (1858)
.+.++++-++|.--++..++.++ ..|+.+..+||+++ ..+|.+++.+.++|+++|+|.|-.+-. .+.+.++.
T Consensus 131 ~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~---~~~r~~~~~~~~~g~~~iiIGThsl~~~~~~f~~Lg 207 (264)
T d1gm5a3 131 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATT---PSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLG 207 (264)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSC---HHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCC
T ss_pred cccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccc---hHHHHHHHHHHHCCCCCEEEeehHHhcCCCCccccc
Confidence 45899999999888777666555 45899999999999 999999999999999999999988765 57788888
Q ss_pred eEE
Q psy15269 1156 QVI 1158 (1858)
Q Consensus 1156 ~VI 1158 (1858)
+||
T Consensus 208 lvi 210 (264)
T d1gm5a3 208 LVI 210 (264)
T ss_dssp EEE
T ss_pred eee
Confidence 888
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=88.50 E-value=0.01 Score=64.34 Aligned_cols=84 Identities=5% Similarity=-0.080 Sum_probs=52.3
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhh--hcccccccccccccCcccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDK--FVRDMRHVSNNILMSPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~--~v~~l~~t~~~ll~~~~~~ 947 (1858)
.+.++-|+|+|+.|+-+.+..+.....+..... .....++.....+...++. ..++++.||+++.....
T Consensus 88 rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~~~-- 158 (237)
T d1gkub1 88 RCYVIFPTSLLVIQAAETIRKYAEKAGVGTENL-------IGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYR-- 158 (237)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGS-------EEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCST--
T ss_pred eEEEEeccHHHHHHHHHHHHHHHHHcCCceEEE-------EeeeecccchhhhhhhhccccccceeccChHHHHHhhh--
Confidence 468999999999999999887777666644222 1112222222223223332 35688999998875432
Q ss_pred ccccccceeecccch
Q psy15269 948 SDVNKYSVLLKYIPQ 962 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r 962 (1858)
.......+++||||+
T Consensus 159 ~~~~~~~vVvDE~d~ 173 (237)
T d1gkub1 159 ELGHFDFIFVDDVDA 173 (237)
T ss_dssp TSCCCSEEEESCHHH
T ss_pred hcCCCCEEEEEChhh
Confidence 333456678999987
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.34 E-value=20 Score=35.87 Aligned_cols=235 Identities=9% Similarity=0.068 Sum_probs=118.7
Q ss_pred CCeEEEEEcCCEEEEEecCCcEEEEcccccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCC
Q psy15269 219 SNIRHIEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEH 298 (1858)
Q Consensus 219 ~~IkqVA~G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~ 298 (1858)
..|..|+......+.-..||.+..|-.. .+.. ...... ...............+....+|.+..|-....
T Consensus 56 ~~V~~v~~~~~~l~s~s~D~~i~~~~~~---~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (293)
T d1p22a2 56 GSVLCLQYDERVIITGSSDSTVRVWDVN---TGEM-----LNTLIH--HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125 (293)
T ss_dssp SCEEEEECCSSEEEEEETTSCEEEEESS---SCCE-----EEEECC--CCSCEEEEECCTTEEEEEETTSCEEEEECSSS
T ss_pred CCEeeeecccceeecccccccccccccc---cccc-----cccccc--cccccccccccccceeecccccceeEeecccc
Confidence 3577888766665556788999888421 1100 000000 01112222234445566677888888865332
Q ss_pred CCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCceEEe
Q psy15269 299 GKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVS 378 (1858)
Q Consensus 299 GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IA 378 (1858)
.. ....... ......|..+.......+....||.+..|-....-.+ ...-.....|..++
T Consensus 126 ~~---------~~~~~~~-~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~----------~~~~~~~~~v~~~~ 185 (293)
T d1p22a2 126 TD---------ITLRRVL-VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFV----------RTLNGHKRGIACLQ 185 (293)
T ss_dssp SC---------CEEEEEE-CCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEE----------EEEECCSSCEEEEE
T ss_pred cc---------ccccccc-cccccccccceecccccccccCCCceeeecCCCCcEE----------EEEccccccccccc
Confidence 11 0001111 1123346666666777777888999999965431110 00001112355666
Q ss_pred ecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEeCCCCC--C
Q psy15269 379 CGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRS--S 456 (1858)
Q Consensus 379 cG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gs--s 456 (1858)
....+.++-..+|. +..|-....-. ..........+..+.......+.-..||.|+.|-+.... .
T Consensus 186 ~~~~~l~~~~~dg~-i~i~d~~~~~~------------~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 252 (293)
T d1p22a2 186 YRDRLVVSGSSDNT-IRLWDIECGAC------------LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPR 252 (293)
T ss_dssp EETTEEEEEETTSC-EEEEETTTCCE------------EEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTT
T ss_pred CCCCeEEEecCCCE-EEEEeccccee------------eeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCcccc
Confidence 66677777788895 98885432111 111111222355566666666667789999999721111 0
Q ss_pred CccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEE
Q psy15269 457 SISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAW 496 (1858)
Q Consensus 457 ~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaW 496 (1858)
......+.....-....|..++....+.+.-..||.|..|
T Consensus 253 ~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iW 292 (293)
T d1p22a2 253 APAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292 (293)
T ss_dssp SCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEE
T ss_pred ccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEe
Confidence 0001111111111123466666655554444457888888
|