Psyllid ID: psy15310

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MDQLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQERRRLEAEEEVEEDIGKEHLYSHDPRALFKTIQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQVIIR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccEEEEccccEEEEcccEEEEEEEEEEcccccEcccccEEEEc
Coil and Loop (DISEMBL)
MDQLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQERRRLEAEEEVEEDigkehlyshdprALFKTIQACLTQEMRIvqqndphlyshdprALFKTIQACLTQEMRIvqqndpvsngarynCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLIskyvdppnmvdvlpNLNAQITQCLSHLVTStfiiekqppqvmktntrFSATVRLLTGSklnvymtppqviir
Flexible Loop (DISEMBL)
MDQLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQErrrleaeeeveedigkehlyshdprALFKTIQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRivqqndpvsngARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFIiekqppqvmktntRFSATVRLltgsklnvymtppqviir
Low Complexity Region (SEG)
MDQLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKreqqlqerrrleaeeeveeDIGKEHLYSHDPRALFKTIQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQVIIR
Disordered region (IsUnstruct)
********IKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWK************************HLYSHDPRALFKTIQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTP******
Disordered Region (DISOPRED)
**************************CF**ENTQG*ILNVELLKWKREQQLQERRRLEAE********************************RIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLK****************PNLNAQITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV***
Disordered Region (DISEMBL)
MDQLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQL***************IGKEHLYSHDPRALFKTIQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQVIIR
Disordered Region (DISPRO)
***LLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQERRRLEAEEEVEEDIGKEHLYSHDPRALFKTIQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQVIIR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDQLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNxxxxxxxxxxxxxxxxxxxxxxxxxxxxGKEHLYSHDPRALFKTIQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQVIIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
P42229	794	Signal transducer and act	yes	N/A	0.442	0.136	0.558	2e-27
Q9TUZ1	799	Signal transducer and act	yes	N/A	0.442	0.135	0.558	2e-27
P51692	787	Signal transducer and act	no	N/A	0.442	0.137	0.558	2e-27
Q9TUZ0	787	Signal transducer and act	no	N/A	0.442	0.137	0.558	2e-27
Q95115	794	Signal transducer and act	yes	N/A	0.442	0.136	0.558	2e-27
Q62771	793	Signal transducer and act	no	N/A	0.442	0.136	0.558	2e-27
P42232	786	Signal transducer and act	yes	N/A	0.442	0.137	0.558	2e-27
P42230	793	Signal transducer and act	no	N/A	0.442	0.136	0.558	2e-27
Q9TUM3	787	Signal transducer and act	no	N/A	0.442	0.137	0.549	4e-27
P52632	786	Signal transducer and act	yes	N/A	0.442	0.137	0.549	5e-27

>sp|P42229|STA5A_HUMAN Signal transducer and activator of transcription 5A OS=Homo sapiens GN=STAT5A PE=1 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 78/111 (70%), Gaps = 3/111 (2%)

Query: 131 VSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNA 190
             NG     +LD++Q +CE LAEIIW  RQQI+ AE   +L  +   P  + ++L  +NA
Sbjct: 262 AGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAE---HLCQQLPIPGPVEEMLAEVNA 318

Query: 191 QITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
            IT  +S LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct: 319 TITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 369

Carries out a dual function: signal transduction and activation of transcription. Mediates cellular responses to the cytokine KITLG/SCF and other growth factors. Mediates cellular responses to ERBB4. May mediate cellular responses to activated FGFR1, FGFR2, FGFR3 and FGFR4. Binds to the GAS element and activates PRL-induced transcription. Regulates the expression of milk proteins during lactation.
Homo sapiens (taxid: 9606)

>sp|Q9TUZ1|STA5A_PIG Signal transducer and activator of transcription 5A OS=Sus scrofa GN=STAT5A PE=2 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 78/111 (70%), Gaps = 3/111 (2%)

Query: 131 VSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNA 190
             NG     +LD++Q +CE LAEIIW  RQQI+ AE   +L  +   P  + ++L  +NA
Sbjct: 262 AGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAE---HLCQQLPIPGPVEEMLAEVNA 318

Query: 191 QITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
            IT  +S LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct: 319 TITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 369

Carries out a dual function: signal transduction and activation of transcription. Mediates cellular responses to the cytokine KITLG/SCF and other growth factors. May mediate cellular responses to activated FGFR1, FGFR2, FGFR3 and FGFR4. Binds to the GAS element and activates PRL-induced transcription. Regulates the expression of milk proteins during lactation.

Sus scrofa (taxid: 9823)

>sp|P51692|STA5B_HUMAN Signal transducer and activator of transcription 5B OS=Homo sapiens GN=STAT5B PE=1 SV=2

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 78/111 (70%), Gaps = 3/111 (2%)

Query: 131 VSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNA 190
             NG     +LD++Q +CE LAEIIW  RQQI+ AE   +L  +   P  + ++L  +NA
Sbjct: 262 AGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAE---HLCQQLPIPGPVEEMLAEVNA 318

Query: 191 QITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
            IT  +S LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct: 319 TITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 369

Carries out a dual function: signal transduction and activation of transcription. Mediates cellular responses to the cytokine KITLG/SCF and other growth factors. Binds to the GAS element and activates PRL-induced transcription.

Homo sapiens (taxid: 9606)

>sp|Q9TUZ0|STA5B_PIG Signal transducer and activator of transcription 5B OS=Sus scrofa GN=STAT5B PE=2 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 78/111 (70%), Gaps = 3/111 (2%)

Query: 131 VSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNA 190
             NG     +LD++Q +CE LAEIIW  RQQI+ AE   +L  +   P  + ++L  +NA
Sbjct: 262 AGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAE---HLCQQLPIPGPVEEMLAEVNA 318

Query: 191 QITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
            IT  +S LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct: 319 TITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 369

Carries out a dual function: signal transduction and activation of transcription. Mediates cellular responses to the cytokine KITLG/SCF and other growth factors. Binds to the GAS element and activates PRL-induced transcription.

Sus scrofa (taxid: 9823)

>sp|Q95115|STA5A_BOVIN Signal transducer and activator of transcription 5A OS=Bos taurus GN=STAT5A PE=2 SV=2

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 78/111 (70%), Gaps = 3/111 (2%)

Query: 131 VSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNA 190
             NG     +LD++Q +CE LAEIIW  RQQI+ AE   +L  +   P  + ++L  +NA
Sbjct: 262 AGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAE---HLCQQLPIPGPVEEMLAEVNA 318

Query: 191 QITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
            IT  +S LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct: 319 TITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 369

Carries out a dual function: signal transduction and activation of transcription. Mediates cellular responses to the cytokine KITLG/SCF and other growth factors. May mediate cellular responses to activated FGFR1, FGFR2, FGFR3 and FGFR4. Binds to the GAS element and activates PRL-induced transcription. Regulates the expression of milk proteins during lactation.

Bos taurus (taxid: 9913)

>sp|Q62771|STA5A_RAT Signal transducer and activator of transcription 5A OS=Rattus norvegicus GN=Stat5a PE=1 SV=1

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 78/111 (70%), Gaps = 3/111 (2%)

Query: 131 VSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNA 190
             NG     +LD++Q +CE LAEIIW  RQQI+ AE   +L  +   P  + ++L  +NA
Sbjct: 262 AGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAE---HLCQQLPIPGPVEEMLAEVNA 318

Query: 191 QITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
            IT  +S LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct: 319 TITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 369

Carries out a dual function: signal transduction and activation of transcription. Mediates cellular responses to the cytokine KITLG/SCF and other growth factors. May mediate cellular responses to activated FGFR1, FGFR2, FGFR3 and FGFR4. Binds to the GAS element and activates PRL-induced transcription. Regulates the expression of milk proteins during lactation.

Rattus norvegicus (taxid: 10116)

>sp|P42232|STA5B_MOUSE Signal transducer and activator of transcription 5B OS=Mus musculus GN=Stat5b PE=1 SV=1

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 78/111 (70%), Gaps = 3/111 (2%)

Query: 131 VSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNA 190
             NG     +LD++Q +CE LAEIIW  RQQI+ AE   +L  +   P  + ++L  +NA
Sbjct: 262 AGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAE---HLCQQLPIPGPVEEMLAEVNA 318

Query: 191 QITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
            IT  +S LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct: 319 TITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 369

Carries out a dual function: signal transduction and activation of transcription. Mediates cellular responses to the cytokine KITLG/SCF and other growth factors. Binds to the GAS element and activates PRL-induced transcription.

Mus musculus (taxid: 10090)

>sp|P42230|STA5A_MOUSE Signal transducer and activator of transcription 5A OS=Mus musculus GN=Stat5a PE=1 SV=1

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 78/111 (70%), Gaps = 3/111 (2%)

Query: 131 VSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNA 190
             NG     +LD++Q +CE LAEIIW  RQQI+ AE   +L  +   P  + ++L  +NA
Sbjct: 262 AGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAE---HLCQQLPIPGPVEEMLAEVNA 318

Query: 191 QITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
            IT  +S LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct: 319 TITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 369

Carries out a dual function: signal transduction and activation of transcription. Mediates cellular responses to the cytokine KITLG/SCF and other growth factors. May mediate cellular responses to activated FGFR1, FGFR2, FGFR3 and FGFR4. Binds to the GAS element and activates PRL-induced transcription. Regulates the expression of milk proteins during lactation.

Mus musculus (taxid: 10090)

>sp|Q9TUM3|STA5B_BOVIN Signal transducer and activator of transcription 5B OS=Bos taurus GN=STAT5B PE=2 SV=2

 Score =  121 bits (304), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/111 (54%), Positives = 77/111 (69%), Gaps = 3/111 (2%)

Query: 131 VSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNA 190
             NG     +LD++Q +CE LAEIIW  RQQI+ AE   +   +   P  + ++L  +NA
Sbjct: 262 AGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAE---HFCQQLPIPGPVEEMLAEVNA 318

Query: 191 QITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
            IT  +S LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct: 319 TITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 369

Carries out a dual function: signal transduction and activation of transcription. Mediates cellular responses to the cytokine KITLG/SCF and other growth factors. Binds to the GAS element and activates PRL-induced transcription.

Bos taurus (taxid: 9913)

>sp|P52632|STA5B_RAT Signal transducer and activator of transcription 5B OS=Rattus norvegicus GN=Stat5b PE=2 SV=1

 Score =  121 bits (303), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 61/111 (54%), Positives = 78/111 (70%), Gaps = 3/111 (2%)

Query: 131 VSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNA 190
             NG     +LD++Q +CE LAEIIW  RQQI+   RL++L  +   P  + ++L  +NA
Sbjct: 262 AGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIR---RLEHLCQQLPIPGPVEEMLAEVNA 318

Query: 191 QITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
            IT  +S L TSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct: 319 TITDIISALSTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 369

Carries out a dual function: signal transduction and activation of transcription. Mediates cellular responses to the cytokine KITLG/SCF and other growth factors. Binds to the GAS element and activates PRL-induced transcription.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
242013973	791	Signal transducer and activator of trans	0.454	0.140	0.716	2e-39
340725344	824	PREDICTED: signal transducer and activat	0.454	0.134	0.707	2e-39
48141041	824	PREDICTED: signal transducer and activat	0.450	0.133	0.705	1e-38
380016406	775	PREDICTED: signal transducer and activat	0.450	0.141	0.705	2e-38
383860846	827	PREDICTED: signal transducer and activat	0.454	0.134	0.690	3e-38
189237690	780	PREDICTED: similar to signal transducer	0.454	0.142	0.654	3e-36
345485405	825	PREDICTED: signal transducer and activat	0.454	0.134	0.654	4e-36
332023016	835	Signal transducer and activator of trans	0.454	0.132	0.692	8e-36
215253296	790	signal transducer and activator of trans	0.454	0.140	0.637	3e-35
307174070	817	Signal transducer and activator of trans	0.450	0.134	0.642	2e-34

>gi|242013973|ref|XP_002427673.1| Signal transducer and activator of transcription 5B, putative [Pediculus humanus corporis] gi|212512103|gb|EEB14935.1| Signal transducer and activator of transcription 5B, putative [Pediculus humanus corporis]

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/113 (71%), Positives = 93/113 (82%), Gaps = 2/113 (1%)

Query: 131 VSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNA 190
             NGA +N  LD IQ +CE+LAEIIW+ RQQIKEAERLK  +S  +DPP +VDVLPNLN 
Sbjct: 302 AGNGAHFNSNLDSIQEWCENLAEIIWLNRQQIKEAERLKQKLS--LDPPGLVDVLPNLNN 359

Query: 191 QITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQVII 243
            +TQ LS LVTSTFIIEKQPPQVMKTNTRF++TVRLL G KLNV+MTPPQV +
Sbjct: 360 LVTQLLSTLVTSTFIIEKQPPQVMKTNTRFTSTVRLLVGGKLNVHMTPPQVKV 412

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725344|ref|XP_003401031.1| PREDICTED: signal transducer and activator of transcription 5B-like [Bombus terrestris] gi|350403859|ref|XP_003486926.1| PREDICTED: signal transducer and activator of transcription 5B-like [Bombus impatiens]

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/113 (70%), Positives = 92/113 (81%), Gaps = 2/113 (1%)

Query: 131 VSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNA 190
             NGA +N  LD IQ +CESLAE+IW+ RQQIKEAERLK   +  ++PP M D+LP LNA
Sbjct: 267 AGNGALFNSNLDSIQEWCESLAELIWLNRQQIKEAERLKQKFA--LEPPGMQDILPTLNA 324

Query: 191 QITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQVII 243
           QITQ LS LVTSTFIIEKQPPQVMKTNTRF++TVRLL G KLNV+MTPPQV +
Sbjct: 325 QITQLLSSLVTSTFIIEKQPPQVMKTNTRFTSTVRLLVGGKLNVHMTPPQVKV 377

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48141041|ref|XP_397181.1| PREDICTED: signal transducer and activator of transcription 5B [Apis mellifera]

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/112 (70%), Positives = 92/112 (82%), Gaps = 2/112 (1%)

Query: 132 SNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQ 191
            NGA +N  LD IQ +CESLAE+IW+ RQQIKEAERLK   +  ++PP M D+LP LN+Q
Sbjct: 268 GNGAPFNNNLDSIQEWCESLAELIWLNRQQIKEAERLKQKFA--LEPPGMQDILPTLNSQ 325

Query: 192 ITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQVII 243
           ITQ LS LVTSTFIIEKQPPQVMKTNTRF++TVRLL G KLNV+MTPPQV +
Sbjct: 326 ITQLLSSLVTSTFIIEKQPPQVMKTNTRFTSTVRLLVGGKLNVHMTPPQVKV 377

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016406|ref|XP_003692176.1| PREDICTED: signal transducer and activator of transcription 5B-like [Apis florea]

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/112 (70%), Positives = 92/112 (82%), Gaps = 2/112 (1%)

Query: 132 SNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQ 191
            NGA +N  LD IQ +CESLAE+IW+ RQQIKEAERLK   +  ++PP M D+LP LN+Q
Sbjct: 268 GNGAPFNNNLDSIQEWCESLAELIWLNRQQIKEAERLKQKFA--LEPPGMQDILPTLNSQ 325

Query: 192 ITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQVII 243
           ITQ LS LVTSTFIIEKQPPQVMKTNTRF++TVRLL G KLNV+MTPPQV +
Sbjct: 326 ITQLLSSLVTSTFIIEKQPPQVMKTNTRFTSTVRLLVGGKLNVHMTPPQVKV 377

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860846|ref|XP_003705899.1| PREDICTED: signal transducer and activator of transcription 5B-like [Megachile rotundata]

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 91/113 (80%), Gaps = 2/113 (1%)

Query: 131 VSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNA 190
             NGA +N  LD IQ +CESLAE+IW+ RQQIKEAE LK   +  ++PP M D+LP LN+
Sbjct: 267 AGNGAPFNSNLDSIQEWCESLAELIWLNRQQIKEAEHLKQKFA--LEPPGMQDILPTLNS 324

Query: 191 QITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQVII 243
           QITQ LS LVTSTFIIEKQPPQVMKTNTRF++TVRLL G KLNV+MTPPQV +
Sbjct: 325 QITQLLSSLVTSTFIIEKQPPQVMKTNTRFTSTVRLLVGGKLNVHMTPPQVKV 377

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237690|ref|XP_969477.2| PREDICTED: similar to signal transducer and activator of transcription [Tribolium castaneum] gi|270008133|gb|EFA04581.1| signal-transducer and activator of transcription protein [Tribolium castaneum]

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 74/113 (65%), Positives = 89/113 (78%), Gaps = 2/113 (1%)

Query: 131 VSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNA 190
             NGA +N  LD IQ +CESLAE+IW+ RQQIKE +RL+  +S  +DPP + D+LP +  
Sbjct: 265 AGNGANFNSNLDTIQDWCESLAELIWLNRQQIKEVDRLRQKLS--LDPPGVADLLPQVLG 322

Query: 191 QITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQVII 243
            +TQ LS LVTSTFIIEKQPPQVMKTNTRF+ATVRLL G KLNV+MTPPQV +
Sbjct: 323 DVTQLLSSLVTSTFIIEKQPPQVMKTNTRFTATVRLLVGGKLNVHMTPPQVKV 375

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485405|ref|XP_001605495.2| PREDICTED: signal transducer and activator of transcription 5B-like [Nasonia vitripennis]

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/113 (65%), Positives = 91/113 (80%), Gaps = 2/113 (1%)

Query: 131 VSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNA 190
             NGA +   LD IQ +CESLAE+IW+ RQQ+KEA+RLK  ++  ++PP + D+LP LN+
Sbjct: 268 AGNGAMFASNLDAIQEWCESLAELIWLNRQQVKEADRLKAKLN--LEPPGVQDILPQLNS 325

Query: 191 QITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQVII 243
            ITQ LS LVTSTFIIEKQPPQVMKTNTRF++TVRLL G KLNV+MTPPQV +
Sbjct: 326 NITQLLSSLVTSTFIIEKQPPQVMKTNTRFTSTVRLLVGGKLNVHMTPPQVKV 378

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023016|gb|EGI63281.1| Signal transducer and activator of transcription 5B [Acromyrmex echinatior]

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 79/114 (69%), Positives = 88/114 (77%), Gaps = 3/114 (2%)

Query: 131 VSNGARYNCT-LDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLN 189
             NGA +    LD IQ +CESLAE+IW TRQQIKEAERLK       +PP + D LPNLN
Sbjct: 265 AGNGANFASNNLDSIQEWCESLAELIWQTRQQIKEAERLKQKFQ--CEPPGIRDTLPNLN 322

Query: 190 AQITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQVII 243
            QITQ LS LVTSTFIIEKQPPQVMKTNTRF++TVRLL G KLNV+MTPPQV +
Sbjct: 323 TQITQFLSSLVTSTFIIEKQPPQVMKTNTRFTSTVRLLVGGKLNVHMTPPQVKV 376

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|215253296|gb|ACJ63721.1| signal transducer and activator of transcription [Artemia franciscana]

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/113 (63%), Positives = 90/113 (79%), Gaps = 2/113 (1%)

Query: 131 VSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNA 190
             NG  +  +LD+IQ +CE+L+EIIW  RQQIK++ERL+   +  +DPP  VD+LP LN 
Sbjct: 267 AGNGVPFVNSLDIIQEWCEALSEIIWQNRQQIKDSERLRTKFA--IDPPGSVDILPTLNT 324

Query: 191 QITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQVII 243
           QITQ LS LVTSTFIIEKQPPQVMKTNTRF+++VRLL G KLNV+M+PPQV +
Sbjct: 325 QITQLLSSLVTSTFIIEKQPPQVMKTNTRFTSSVRLLVGPKLNVHMSPPQVSV 377

Source: Artemia franciscana

Species: Artemia franciscana

Genus: Artemia

Family: Artemiidae

Order: Anostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174070|gb|EFN64757.1| Signal transducer and activator of transcription 5B [Camponotus floridanus]

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/112 (64%), Positives = 89/112 (79%), Gaps = 2/112 (1%)

Query: 131 VSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMV-DVLPNLN 189
             NGA +   LD+IQ +CE+LA+IIW TRQ IK+ ERLK+    + +P  M+ ++ P LN
Sbjct: 264 AGNGATFTSNLDLIQNWCENLADIIWTTRQHIKDGERLKSKFQPF-EPQTMLQNIFPTLN 322

Query: 190 AQITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
           +QITQ LS LVTSTFIIEKQPPQVMKTNTRF++TVRLL G+KLNV+MTPPQV
Sbjct: 323 SQITQLLSSLVTSTFIIEKQPPQVMKTNTRFTSTVRLLVGTKLNVHMTPPQV 374

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
UNIPROTKB|Q9TUZ0	787	STAT5B "Signal transducer and	0.639	0.198	0.441	7.9e-28
UNIPROTKB|P51692	787	STAT5B "Signal transducer and	0.639	0.198	0.435	2.1e-27
UNIPROTKB|F1PNW8	793	STAT5B "Uncharacterized protei	0.639	0.196	0.435	2.2e-27
MGI|MGI:103035	786	Stat5b "signal transducer and	0.639	0.198	0.429	9.2e-27
UNIPROTKB|Q9TUZ1	799	STAT5A "Signal transducer and	0.942	0.287	0.330	9.2e-27
ZFIN|ZDB-GENE-030820-2	785	stat5.1 "signal transducer and	0.668	0.207	0.436	1.1e-26
UNIPROTKB|O93378	787	Stat5 "Signal transducer and a	0.950	0.294	0.331	1.1e-26
UNIPROTKB|F1S0Q9	787	STAT5B "Signal transducer and	0.942	0.292	0.330	1.1e-26
UNIPROTKB|F1P2T7	788	STAT5B "Uncharacterized protei	0.950	0.294	0.331	1.1e-26
UNIPROTKB|F1S0R0	799	STAT5A "Signal transducer and	0.639	0.195	0.441	1.9e-26

UNIPROTKB|Q9TUZ0 STAT5B "Signal transducer and activator of transcription 5B" [Sus scrofa (taxid:9823)]

 Score = 308 (113.5 bits), Expect = 7.9e-28, Sum P(2) = 7.9e-28
 Identities = 72/163 (44%), Positives = 99/163 (60%)

Query:    83 TIQACLTQEMRIVQQNDPHLYSHDPRAL-FKTIQACLTQEMRIVQ---QNDPVSNGARYN 138
             T++A L +E + +QQ    L     + L     Q  +  +  ++Q   +     NG    
Sbjct:   210 TLEAWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWKRRQQLAGNGGPPE 269

Query:   139 CTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSH 198
              +LD++Q +CE LAEIIW  RQQI+ AE   +L  +   P  + ++L  +NA IT  +S 
Sbjct:   270 GSLDVLQSWCEKLAEIIWQNRQQIRRAE---HLCQQLPIPGPVEEMLAEVNATITDIISA 326

Query:   199 LVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
             LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct:   327 LVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 369

GO:0046544 "development of secondary male sexual characteristics" evidence=ISS

GO:0045647 "negative regulation of erythrocyte differentiation" evidence=ISS

GO:0042448 "progesterone metabolic process" evidence=ISS

GO:0019915 "lipid storage" evidence=ISS

GO:0007565 "female pregnancy" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0050729 "positive regulation of inflammatory response" evidence=ISS

GO:0046543 "development of secondary female sexual characteristics" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0045931 "positive regulation of mitotic cell cycle" evidence=ISS

GO:0045579 "positive regulation of B cell differentiation" evidence=ISS

GO:0045086 "positive regulation of interleukin-2 biosynthetic process" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0043029 "T cell homeostasis" evidence=ISS

GO:0042104 "positive regulation of activated T cell proliferation" evidence=ISS

GO:0040018 "positive regulation of multicellular organism growth" evidence=ISS

GO:0030856 "regulation of epithelial cell differentiation" evidence=ISS

GO:0030155 "regulation of cell adhesion" evidence=ISS

GO:0019221 "cytokine-mediated signaling pathway" evidence=ISS

GO:0019218 "regulation of steroid metabolic process" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0007595 "lactation" evidence=ISS

GO:0007259 "JAK-STAT cascade" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0004871 "signal transducer activity" evidence=ISS

GO:0001779 "natural killer cell differentiation" evidence=ISS

GO:0001553 "luteinization" evidence=ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|P51692 STAT5B "Signal transducer and activator of transcription 5B" [Homo sapiens (taxid:9606)]

 Score = 304 (112.1 bits), Expect = 2.1e-27, Sum P(2) = 2.1e-27
 Identities = 71/163 (43%), Positives = 99/163 (60%)

Query:    83 TIQACLTQEMRIVQQNDPHLYSHDPRAL-FKTIQACLTQEMRIVQ---QNDPVSNGARYN 138
             +++A L +E + +QQ    L     + L     Q  +  +  ++Q   +     NG    
Sbjct:   210 SLEAWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWKRRQQLAGNGGPPE 269

Query:   139 CTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSH 198
              +LD++Q +CE LAEIIW  RQQI+ AE   +L  +   P  + ++L  +NA IT  +S 
Sbjct:   270 GSLDVLQSWCEKLAEIIWQNRQQIRRAE---HLCQQLPIPGPVEEMLAEVNATITDIISA 326

Query:   199 LVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
             LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct:   327 LVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 369

GO:0005509 "calcium ion binding" evidence=IEA

GO:0000979 "RNA polymerase II core promoter sequence-specific DNA binding" evidence=IEA

GO:0001553 "luteinization" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0001779 "natural killer cell differentiation" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0006953 "acute-phase response" evidence=IEA

GO:0007565 "female pregnancy" evidence=IEA

GO:0007595 "lactation" evidence=IEA

GO:0019218 "regulation of steroid metabolic process" evidence=IEA

GO:0019221 "cytokine-mediated signaling pathway" evidence=IEA

GO:0019915 "lipid storage" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0030856 "regulation of epithelial cell differentiation" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0032819 "positive regulation of natural killer cell proliferation" evidence=IEA

GO:0032825 "positive regulation of natural killer cell differentiation" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0040018 "positive regulation of multicellular organism growth" evidence=IEA

GO:0042104 "positive regulation of activated T cell proliferation" evidence=IEA

GO:0042448 "progesterone metabolic process" evidence=IEA

GO:0043029 "T cell homeostasis" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0045086 "positive regulation of interleukin-2 biosynthetic process" evidence=IEA

GO:0045471 "response to ethanol" evidence=IEA

GO:0045579 "positive regulation of B cell differentiation" evidence=IEA

GO:0045588 "positive regulation of gamma-delta T cell differentiation" evidence=IEA

GO:0045647 "negative regulation of erythrocyte differentiation" evidence=IEA

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA

GO:0045954 "positive regulation of natural killer cell mediated cytotoxicity" evidence=IEA

GO:0046543 "development of secondary female sexual characteristics" evidence=IEA

GO:0046544 "development of secondary male sexual characteristics" evidence=IEA

GO:0048541 "Peyer's patch development" evidence=IEA

GO:0048661 "positive regulation of smooth muscle cell proliferation" evidence=IEA

GO:0050729 "positive regulation of inflammatory response" evidence=IEA

GO:0051272 "positive regulation of cellular component movement" evidence=IEA

GO:0070669 "response to interleukin-2" evidence=IEA

GO:0070670 "response to interleukin-4" evidence=IEA

GO:0070672 "response to interleukin-15" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0007259 "JAK-STAT cascade" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0060397 "JAK-STAT cascade involved in growth hormone signaling pathway" evidence=IDA;TAS

GO:0000255 "allantoin metabolic process" evidence=ISS

GO:0006101 "citrate metabolic process" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0006105 "succinate metabolic process" evidence=ISS

GO:0006107 "oxaloacetate metabolic process" evidence=ISS

GO:0006549 "isoleucine metabolic process" evidence=ISS

GO:0006573 "valine metabolic process" evidence=ISS

GO:0006600 "creatine metabolic process" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

GO:0019530 "taurine metabolic process" evidence=ISS

GO:0040014 "regulation of multicellular organism growth" evidence=ISS

GO:0046449 "creatinine metabolic process" evidence=ISS

GO:0032355 "response to estradiol stimulus" evidence=IDA

GO:0032870 "cellular response to hormone stimulus" evidence=IDA

GO:0035259 "glucocorticoid receptor binding" evidence=IPI

UNIPROTKB|F1PNW8 STAT5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 304 (112.1 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
 Identities = 71/163 (43%), Positives = 99/163 (60%)

Query:    83 TIQACLTQEMRIVQQNDPHLYSHDPRAL-FKTIQACLTQEMRIVQ---QNDPVSNGARYN 138
             +++A L +E + +QQ    L     + L     Q  +  +  ++Q   +     NG    
Sbjct:   210 SLEAWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWKRRQQLAGNGGPPE 269

Query:   139 CTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSH 198
              +LD++Q +CE LAEIIW  RQQI+ AE   +L  +   P  + ++L  +NA IT  +S 
Sbjct:   270 GSLDVLQSWCEKLAEIIWQNRQQIRRAE---HLCQQLPIPGPVEEMLAEVNATITDIISA 326

Query:   199 LVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
             LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct:   327 LVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 369

GO:0005634 "nucleus" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

MGI|MGI:103035 Stat5b "signal transducer and activator of transcription 5B" [Mus musculus (taxid:10090)]

 Score = 300 (110.7 bits), Expect = 9.2e-27, Sum P(2) = 9.2e-27
 Identities = 70/163 (42%), Positives = 98/163 (60%)

Query:    83 TIQACLTQEMRIVQQNDPHLYSHDPRAL-FKTIQACLTQEMRIVQ---QNDPVSNGARYN 138
             +++  L +E + +QQ    L     + L     Q  +  +  ++Q   +     NG    
Sbjct:   210 SLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWKRRQQLAGNGGPPE 269

Query:   139 CTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSH 198
              +LD++Q +CE LAEIIW  RQQI+ AE   +L  +   P  + ++L  +NA IT  +S 
Sbjct:   270 GSLDVLQSWCEKLAEIIWQNRQQIRRAE---HLCQQLPIPGPVEEMLAEVNATITDIISA 326

Query:   199 LVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
             LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct:   327 LVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 369

GO:0000255 "allantoin metabolic process" evidence=IMP

GO:0000979 "RNA polymerase II core promoter sequence-specific DNA binding" evidence=IDA

GO:0001553 "luteinization" evidence=ISO;IGI

GO:0001779 "natural killer cell differentiation" evidence=IGI

GO:0001889 "liver development" evidence=ISO

GO:0003677 "DNA binding" evidence=ISO;IDA

GO:0003690 "double-stranded DNA binding" evidence=ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0004871 "signal transducer activity" evidence=IGI

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006101 "citrate metabolic process" evidence=IMP

GO:0006103 "2-oxoglutarate metabolic process" evidence=IMP

GO:0006105 "succinate metabolic process" evidence=IMP

GO:0006107 "oxaloacetate metabolic process" evidence=IMP

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO

GO:0006549 "isoleucine metabolic process" evidence=IMP

GO:0006573 "valine metabolic process" evidence=IMP

GO:0006600 "creatine metabolic process" evidence=IMP

GO:0006631 "fatty acid metabolic process" evidence=IMP

GO:0006953 "acute-phase response" evidence=ISO

GO:0007165 "signal transduction" evidence=IGI

GO:0007259 "JAK-STAT cascade" evidence=ISO;IDA

GO:0007548 "sex differentiation" evidence=IMP

GO:0007565 "female pregnancy" evidence=IGI;IMP

GO:0007595 "lactation" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IGI

GO:0019218 "regulation of steroid metabolic process" evidence=IGI

GO:0019221 "cytokine-mediated signaling pathway" evidence=IDA

GO:0019530 "taurine metabolic process" evidence=IMP

GO:0019915 "lipid storage" evidence=IGI

GO:0030155 "regulation of cell adhesion" evidence=IMP

GO:0030856 "regulation of epithelial cell differentiation" evidence=IMP

GO:0032355 "response to estradiol stimulus" evidence=ISO

GO:0032496 "response to lipopolysaccharide" evidence=ISO

GO:0032819 "positive regulation of natural killer cell proliferation" evidence=IMP

GO:0032825 "positive regulation of natural killer cell differentiation" evidence=IMP

GO:0032870 "cellular response to hormone stimulus" evidence=ISO

GO:0033077 "T cell differentiation in thymus" evidence=IGI

GO:0035259 "glucocorticoid receptor binding" evidence=ISO

GO:0040014 "regulation of multicellular organism growth" evidence=IDA

GO:0040018 "positive regulation of multicellular organism growth" evidence=IGI;IMP

GO:0042104 "positive regulation of activated T cell proliferation" evidence=IGI;IMP

GO:0042448 "progesterone metabolic process" evidence=IGI

GO:0043029 "T cell homeostasis" evidence=IGI

GO:0043066 "negative regulation of apoptotic process" evidence=IGI

GO:0043434 "response to peptide hormone stimulus" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0045086 "positive regulation of interleukin-2 biosynthetic process" evidence=IGI

GO:0045579 "positive regulation of B cell differentiation" evidence=IGI

GO:0045588 "positive regulation of gamma-delta T cell differentiation" evidence=IGI

GO:0045621 "positive regulation of lymphocyte differentiation" evidence=IGI

GO:0045647 "negative regulation of erythrocyte differentiation" evidence=IGI

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IGI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IGI;IDA;IMP

GO:0045954 "positive regulation of natural killer cell mediated cytotoxicity" evidence=IMP

GO:0046449 "creatinine metabolic process" evidence=IMP

GO:0046543 "development of secondary female sexual characteristics" evidence=IMP

GO:0046544 "development of secondary male sexual characteristics" evidence=IGI;IMP

GO:0048541 "Peyer's patch development" evidence=IGI

GO:0048661 "positive regulation of smooth muscle cell proliferation" evidence=ISO

GO:0050729 "positive regulation of inflammatory response" evidence=IGI

GO:0051272 "positive regulation of cellular component movement" evidence=ISO

GO:0060397 "JAK-STAT cascade involved in growth hormone signaling pathway" evidence=ISO;IDA

GO:0070669 "response to interleukin-2" evidence=IMP

GO:0070670 "response to interleukin-4" evidence=IMP

GO:0070672 "response to interleukin-15" evidence=IMP

UNIPROTKB|Q9TUZ1 STAT5A "Signal transducer and activator of transcription 5A" [Sus scrofa (taxid:9823)]

 Score = 311 (114.5 bits), Expect = 9.2e-27, P = 9.2e-27
 Identities = 79/239 (33%), Positives = 122/239 (51%)

Query:     9 IKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKXXXXXXXXXXXXXXXXXXXDIG 68
             + A+ Q   Q+    +E   + ++T+ ++  ++  +                      + 
Sbjct:   134 VDAMSQKHLQINQTFEELRLVTQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLAQLN 193

Query:    69 KEHLYSHDPRALFK--TIQACLTQEMRIVQQNDPHLYSHDPRAL-FKTIQACLTQEMRIV 125
              +   S +     K  T++A L +E + +QQ    L     + L     Q  +  +  ++
Sbjct:   194 PQECLSRETALQQKQVTLEAWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELI 253

Query:   126 Q---QNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMV 182
             Q   +     NG     +LD++Q +CE LAEIIW  RQQI+ AE   +L  +   P  + 
Sbjct:   254 QWKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAE---HLCQQLPIPGPVE 310

Query:   183 DVLPNLNAQITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
             ++L  +NA IT  +S LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct:   311 EMLAEVNATITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 369

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0045086 "positive regulation of interleukin-2 biosynthetic process" evidence=ISS

GO:0030879 "mammary gland development" evidence=ISS

GO:0019218 "regulation of steroid metabolic process" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0050729 "positive regulation of inflammatory response" evidence=ISS

GO:0046543 "development of secondary female sexual characteristics" evidence=ISS

GO:0045931 "positive regulation of mitotic cell cycle" evidence=ISS

GO:0045647 "negative regulation of erythrocyte differentiation" evidence=ISS

GO:0045579 "positive regulation of B cell differentiation" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0043029 "T cell homeostasis" evidence=ISS

GO:0042104 "positive regulation of activated T cell proliferation" evidence=ISS

GO:0040018 "positive regulation of multicellular organism growth" evidence=ISS

GO:0030856 "regulation of epithelial cell differentiation" evidence=ISS

GO:0030155 "regulation of cell adhesion" evidence=ISS

GO:0019915 "lipid storage" evidence=ISS

GO:0019221 "cytokine-mediated signaling pathway" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0007595 "lactation" evidence=ISS

GO:0007565 "female pregnancy" evidence=ISS

GO:0007259 "JAK-STAT cascade" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0004871 "signal transducer activity" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0001779 "natural killer cell differentiation" evidence=ISS

GO:0001553 "luteinization" evidence=ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

ZFIN|ZDB-GENE-030820-2 stat5.1 "signal transducer and activator of transcription 5.1" [Danio rerio (taxid:7955)]

 Score = 310 (114.2 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 75/172 (43%), Positives = 103/172 (59%)

Query:    76 DPRALFK--TIQACLTQEMRIVQQNDPHLYSHDPR--ALFKTIQACLTQEMRIV--QQND 129
             +P  L K  T++A LT+E   +Q+    L     +  AL +  Q  +  +  I   ++  
Sbjct:   201 EPSLLSKRATVEAWLTREANTLQKYRLSLAEKHQKTLALLRKQQTVILDDELIQWKRRQQ 260

Query:   130 PVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLN 189
                NG      LD++Q +CE LAE IW  RQQI+ AE L+  +     P  + ++L +LN
Sbjct:   261 LAGNGGPPEGGLDILQSWCEKLAETIWQNRQQIRRAEHLRQQLPI---PGPIEELLTDLN 317

Query:   190 AQITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
             + IT  +S LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct:   318 STITDIISTLVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 369

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0030218 "erythrocyte differentiation" evidence=IGI;IMP

GO:0007259 "JAK-STAT cascade" evidence=IGI;IMP

GO:0005622 "intracellular" evidence=IGI;IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0030098 "lymphocyte differentiation" evidence=IMP

GO:0045639 "positive regulation of myeloid cell differentiation" evidence=IMP

GO:0048821 "erythrocyte development" evidence=IMP

UNIPROTKB|O93378 Stat5 "Signal transducer and activator of transcription 5B" [Gallus gallus (taxid:9031)]

 Score = 310 (114.2 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 80/241 (33%), Positives = 123/241 (51%)

Query:     7 TKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKXXXXXXXXXXXXXXXXXXXD 66
             T + A+ Q   Q+    +E   + ++++ ++  ++  +                      
Sbjct:   132 TLVDAMSQKHLQINQTFEELRLITQDSENELKKLQQTQEYFIIQYQENMRLQAQFSQLSQ 191

Query:    67 IGKEHLYSHDPRALFK--TIQACLTQEMRIVQQNDPHLYSHDPRAL--FKTIQACLTQEM 122
             +G +   S +     K  +++A L +E + +QQ    L     + L   +  Q  +  + 
Sbjct:   192 LGPQERLSRETTLQQKKASLEAWLHREAQTLQQYRVELAEKHQKTLQLLRKQQTTILDDE 251

Query:   123 RIV--QQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPN 180
              I   ++     NG     TLD++Q +CE LAEIIW  RQQI+ AE   +L  +   P  
Sbjct:   252 LIQWKRRQQLAGNGGPPEGTLDVLQTWCEKLAEIIWQNRQQIRRAE---HLCQQLPIPGP 308

Query:   181 MVDVLPNLNAQITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQ 240
             + ++L  LN  IT  +S LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQ
Sbjct:   309 VEEMLSELNGTITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQ 368

Query:   241 V 241
             V
Sbjct:   369 V 369

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0001779 "natural killer cell differentiation" evidence=ISS

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007259 "JAK-STAT cascade" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0019218 "regulation of steroid metabolic process" evidence=ISS

GO:0019221 "cytokine-mediated signaling pathway" evidence=ISS

GO:0030155 "regulation of cell adhesion" evidence=ISS

GO:0030856 "regulation of epithelial cell differentiation" evidence=ISS

GO:0040018 "positive regulation of multicellular organism growth" evidence=ISS

GO:0043029 "T cell homeostasis" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0045086 "positive regulation of interleukin-2 biosynthetic process" evidence=ISS

GO:0045579 "positive regulation of B cell differentiation" evidence=ISS

GO:0045931 "positive regulation of mitotic cell cycle" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0046543 "development of secondary female sexual characteristics" evidence=ISS

GO:0046544 "development of secondary male sexual characteristics" evidence=ISS

GO:0042104 "positive regulation of activated T cell proliferation" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0019915 "lipid storage" evidence=ISS

GO:0042448 "progesterone metabolic process" evidence=ISS

GO:0045647 "negative regulation of erythrocyte differentiation" evidence=ISS

GO:0050729 "positive regulation of inflammatory response" evidence=ISS

UNIPROTKB|F1S0Q9 STAT5B "Signal transducer and activator of transcription 5B" [Sus scrofa (taxid:9823)]

 Score = 310 (114.2 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 79/239 (33%), Positives = 122/239 (51%)

Query:     9 IKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKXXXXXXXXXXXXXXXXXXXDIG 68
             + A+ Q   Q+    +E   + ++T+ ++  ++  +                      + 
Sbjct:   134 VDAMSQKHLQINQTFEELRLVTQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLAQLN 193

Query:    69 KEHLYSHDPRALFK--TIQACLTQEMRIVQQNDPHLYSHDPRAL-FKTIQACLTQEMRIV 125
              +   S +     K  T++A L +E + +QQ    L     + L     Q  +  +  ++
Sbjct:   194 PQERLSRETALQQKQVTLEAWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELI 253

Query:   126 Q---QNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMV 182
             Q   +     NG     +LD++Q +CE LAEIIW  RQQI+ AE   +L  +   P  + 
Sbjct:   254 QWKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAE---HLCQQLPIPGPVE 310

Query:   183 DVLPNLNAQITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
             ++L  +NA IT  +S LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct:   311 EMLAEVNATITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 369

GO:0001553 "luteinization" evidence=IEA

GO:0000979 "RNA polymerase II core promoter sequence-specific DNA binding" evidence=IEA

GO:0000255 "allantoin metabolic process" evidence=IEA

GO:0070672 "response to interleukin-15" evidence=IEA

GO:0070670 "response to interleukin-4" evidence=IEA

GO:0070669 "response to interleukin-2" evidence=IEA

GO:0060397 "JAK-STAT cascade involved in growth hormone signaling pathway" evidence=IEA

GO:0050729 "positive regulation of inflammatory response" evidence=IEA

GO:0048541 "Peyer's patch development" evidence=IEA

GO:0046544 "development of secondary male sexual characteristics" evidence=IEA

GO:0046543 "development of secondary female sexual characteristics" evidence=IEA

GO:0046449 "creatinine metabolic process" evidence=IEA

GO:0045954 "positive regulation of natural killer cell mediated cytotoxicity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA

GO:0045647 "negative regulation of erythrocyte differentiation" evidence=IEA

GO:0045588 "positive regulation of gamma-delta T cell differentiation" evidence=IEA

GO:0045579 "positive regulation of B cell differentiation" evidence=IEA

GO:0045086 "positive regulation of interleukin-2 biosynthetic process" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043029 "T cell homeostasis" evidence=IEA

GO:0042448 "progesterone metabolic process" evidence=IEA

GO:0042104 "positive regulation of activated T cell proliferation" evidence=IEA

GO:0040018 "positive regulation of multicellular organism growth" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0032825 "positive regulation of natural killer cell differentiation" evidence=IEA

GO:0032819 "positive regulation of natural killer cell proliferation" evidence=IEA

GO:0032355 "response to estradiol stimulus" evidence=IEA

GO:0030856 "regulation of epithelial cell differentiation" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0019915 "lipid storage" evidence=IEA

GO:0019530 "taurine metabolic process" evidence=IEA

GO:0019221 "cytokine-mediated signaling pathway" evidence=IEA

GO:0019218 "regulation of steroid metabolic process" evidence=IEA

GO:0007595 "lactation" evidence=IEA

GO:0007565 "female pregnancy" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006600 "creatine metabolic process" evidence=IEA

GO:0006573 "valine metabolic process" evidence=IEA

GO:0006549 "isoleucine metabolic process" evidence=IEA

GO:0006107 "oxaloacetate metabolic process" evidence=IEA

GO:0006105 "succinate metabolic process" evidence=IEA

GO:0006103 "2-oxoglutarate metabolic process" evidence=IEA

GO:0006101 "citrate metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0001779 "natural killer cell differentiation" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|F1P2T7 STAT5B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 310 (114.2 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 80/241 (33%), Positives = 123/241 (51%)

Query:     7 TKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKXXXXXXXXXXXXXXXXXXXD 66
             T + A+ Q   Q+    +E   + ++++ ++  ++  +                      
Sbjct:   133 TLVDAMSQKHLQINQTFEELRLITQDSENELKKLQQTQEYFIIQYQENMRLQAQFSQLSQ 192

Query:    67 IGKEHLYSHDPRALFK--TIQACLTQEMRIVQQNDPHLYSHDPRAL--FKTIQACLTQEM 122
             +G +   S +     K  +++A L +E + +QQ    L     + L   +  Q  +  + 
Sbjct:   193 LGPQERLSRETTLQQKKASLEAWLHREAQTLQQYRVELAEKHQKTLQLLRKQQTTILDDE 252

Query:   123 RIV--QQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPN 180
              I   ++     NG     TLD++Q +CE LAEIIW  RQQI+ AE   +L  +   P  
Sbjct:   253 LIQWKRRQQLAGNGGPPEGTLDVLQTWCEKLAEIIWQNRQQIRRAE---HLCQQLPIPGP 309

Query:   181 MVDVLPNLNAQITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQ 240
             + ++L  LN  IT  +S LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQ
Sbjct:   310 VEEMLSELNGTITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQ 369

Query:   241 V 241
             V
Sbjct:   370 V 370

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1S0R0 STAT5A "Signal transducer and activator of transcription 5B" [Sus scrofa (taxid:9823)]

 Score = 308 (113.5 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 72/163 (44%), Positives = 99/163 (60%)

Query:    83 TIQACLTQEMRIVQQNDPHLYSHDPRAL-FKTIQACLTQEMRIVQ---QNDPVSNGARYN 138
             T++A L +E + +QQ    L     + L     Q  +  +  ++Q   +     NG    
Sbjct:   210 TLEAWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWKRRQQLAGNGGPPE 269

Query:   139 CTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSH 198
              +LD++Q +CE LAEIIW  RQQI+ AE   +L  +   P  + ++L  +NA IT  +S 
Sbjct:   270 GSLDVLQSWCEKLAEIIWQNRQQIRRAE---HLCQQLPIPGPVEEMLAEVNATITDIISA 326

Query:   199 LVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
             LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct:   327 LVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 369

GO:0005634 "nucleus" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P42229	STA5A_HUMAN	No assigned EC number	0.5585	0.4426	0.1360	yes	N/A
P52632	STA5B_RAT	No assigned EC number	0.5495	0.4426	0.1374	yes	N/A
P42232	STA5B_MOUSE	No assigned EC number	0.5585	0.4426	0.1374	yes	N/A
Q9TUZ1	STA5A_PIG	No assigned EC number	0.5585	0.4426	0.1351	yes	N/A
Q95115	STA5A_BOVIN	No assigned EC number	0.5585	0.4426	0.1360	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	244
pfam01017	182	pfam01017, STAT_alpha, STAT protein, all-alpha dom	6e-09
pfam02864	254	pfam02864, STAT_bind, STAT protein, DNA binding do	7e-09

>gnl|CDD|216246 pfam01017, STAT_alpha, STAT protein, all-alpha domain

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 133 NGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQI 192
            G      LD +Q +  +LAE ++  RQQ+K+ E L+  ++   +   +    P LN ++
Sbjct: 115 IGGPPEGCLDQLQNWFTALAESLFQLRQQLKKLEELRQKLT--YEGDPITKGRPQLNERV 172

Query: 193 TQCLSHLVTS 202
           T+ L +LVTS
Sbjct: 173 TELLKNLVTS 182

STAT proteins (Signal Transducers and Activators of Transcription) are a family of transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors. STAT proteins also include an SH2 domain pfam00017. Length = 182

>gnl|CDD|145817 pfam02864, STAT_bind, STAT protein, DNA binding domain

 Score = 54.4 bits (131), Expect = 7e-09
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 9/48 (18%)

Query: 204 FIIEKQP--------PQVMKTNTRFSATVRLLTGS-KLNVYMTPPQVI 242
           F++E+QP        P V+KT T+F+A VRLL    +LN  + P  VI
Sbjct: 1   FVVERQPCMPTHPQRPLVLKTGTQFTAKVRLLVKLQELNYQLKPKVVI 48

STAT proteins (Signal Transducers and Activators of Transcription) are a family of transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors. This family represents the DNA binding domain of STAT, which has an ig-like fold. STAT proteins also include an SH2 domain pfam00017. Length = 254

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
KOG3667|consensus	682		99.98
PF01017	182	STAT_alpha: STAT protein, all-alpha domain; InterP	99.97
PF02865	124	STAT_int: STAT protein, protein interaction domain	98.52
KOG3667|consensus	682		97.17

>KOG3667|consensus

Probab=99.98  E-value=1.9e-32  Score=271.39  Aligned_cols=154  Identities=33%  Similarity=0.436  Sum_probs=147.0

Q ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCChHHHHH
Q psy15310          3 QLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQERRRLEAEEEVEEDIGKEHLYSHDPRALFK   82 (244)
Q Consensus         3 ~~~~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~el~~wk~~qq~~~~~~~~~e~~~~~~~g~~~~y~~~p~elv~   82 (244)
                      .+++.++++|+++|.++++++.+.+...+.+|..+++ ||+.|||+||+|                              
T Consensus       196 ~~lq~~l~~l~~~r~Ev~~k~~~~L~~~~~~~~~~~~-eL~~Wkr~QQlA------------------------------  244 (682)
T KOG3667|consen  196 AQLQRMLNTLDQYRKEVVEKIAKLLGLLRKLQNTLLD-ELIDWKRRQQLA------------------------------  244 (682)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc------------------------------
Confidence            4678899999999999999999999999999999999 999999999999                              


Q ss_pred             HHHHHHHHHHHHhhhcCCCcccCchhHHHHHHHhhhhhhHhhhhcCCCCCCCCCcccchhhHHHHHHhHHHHHHHHHHHH
Q psy15310         83 TIQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQI  162 (244)
Q Consensus        83 ~i~~~l~~e~r~v~~a~phl~~~~~~~~~~~~~lq~~qe~~iiqyq~~~~iGaP~~~~LDqLQ~WfE~LAe~iwqlRQQI  162 (244)
                                                                       |||||++++||+||+|||++|+++||+|+++
T Consensus       245 -------------------------------------------------~~g~P~~~~Ld~lq~~~~sla~~~~q~rq~~  275 (682)
T KOG3667|consen  245 -------------------------------------------------CIGGPPEGSLDQLQNWFTSLAESILQLRQQI  275 (682)
T ss_pred             -------------------------------------------------ccCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                             9999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhcccCCCCccCchhhHHHHHHHHHHHHhhcccccccCCCcccccccccchhhhhhhcCCcCCcCCCCccc
Q psy15310        163 KEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQVI  242 (244)
Q Consensus       163 k~le~L~~~l~~~~~~~~~~~~l~~L~~~it~LLs~LVtSSFVVEKQPPQVLKT~tKFtatVRLLVG~kLni~mnpPqVk  242 (244)
                      ++++++++.++  |+     ..++.+++++++++..|++|+||||+|||+|+||+++|.+++|.++|.+++++++||.+.
T Consensus       276 k~l~~~~~~~~--~~-----~~~~~l~~~~~~~~~~L~~s~Fvve~QP~~p~~~~~~~~~~~~~~~t~k~~lv~~p~~~~  348 (682)
T KOG3667|consen  276 KKLEELCQKLS--YP-----KMRAELNERITELFRNLVTSAFVVEKQPCMPLKPQRPLVAKTRVLFTVKRLLVKNPELNY  348 (682)
T ss_pred             HHHHHhhhccC--CC-----CchhhHHHHHHHHHHHHHhhhceeecCCCcccCCCCchhhheeeEEeeccceecCCcchh
Confidence            99999999988  76     346779999999999999999999999999999999999999999997799999999886


Q ss_pred             c
Q psy15310        243 I  243 (244)
Q Consensus       243 ~  243 (244)
                      +
T Consensus       349 ~  349 (682)
T KOG3667|consen  349 A  349 (682)
T ss_pred             h
Confidence            3

>PF01017 STAT_alpha: STAT protein, all-alpha domain; InterPro: IPR013800 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []

Probab=99.97  E-value=7.4e-32  Score=230.51  Aligned_cols=119  Identities=42%  Similarity=0.657  Sum_probs=109.4

Q ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCChHHHHH
Q psy15310          3 QLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQERRRLEAEEEVEEDIGKEHLYSHDPRALFK   82 (244)
Q Consensus         3 ~~~~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~el~~wk~~qq~~~~~~~~~e~~~~~~~g~~~~y~~~p~elv~   82 (244)
                      ..++.+++.|.+.|.++++++++++..++.+|+.++++||..|||+||+|                              
T Consensus        64 ~~~~~~~~~L~~~R~~lv~~l~~~~~~~~~lq~~ll~~eL~~WKrrQqlA------------------------------  113 (182)
T PF01017_consen   64 QQLQQMLNELDQKRKELVSKLKETLNCLEQLQSQLLDEELIEWKRRQQLA------------------------------  113 (182)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------
Confidence            46788999999999999999999999999999999999999999999999                              


Q ss_pred             HHHHHHHHHHHHhhhcCCCcccCchhHHHHHHHhhhhhhHhhhhcCCCCCCCCCcccchhhHHHHHHhHHHHHHHHHHHH
Q psy15310         83 TIQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQI  162 (244)
Q Consensus        83 ~i~~~l~~e~r~v~~a~phl~~~~~~~~~~~~~lq~~qe~~iiqyq~~~~iGaP~~~~LDqLQ~WfE~LAe~iwqlRQQI  162 (244)
                                                                       |||||++++||+||+|||+|||++|++|++|
T Consensus       114 -------------------------------------------------~iG~P~~~~LD~LQ~wfe~LAe~l~qlrqql  144 (182)
T PF01017_consen  114 -------------------------------------------------CIGAPFDSSLDQLQNWFESLAEILWQLRQQL  144 (182)
T ss_dssp             -------------------------------------------------HTTSS----THHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------------------cCCCCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                                                             9999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhcccCCCCccCchhhHHHHHHHHHHHHhhc
Q psy15310        163 KEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTS  202 (244)
Q Consensus       163 k~le~L~~~l~~~~~~~~~~~~l~~L~~~it~LLs~LVtS  202 (244)
                      ++++++.+++|  |++||++..+|.++++++.+|++||+|
T Consensus       145 k~l~~l~~k~~--~~~d~~~~~~~~L~~~v~~ll~~Lv~S  182 (182)
T PF01017_consen  145 KKLEELQQKLT--YENDPIPDQLPQLNERVTELLKNLVTS  182 (182)
T ss_dssp             HHHHHHHTTS----TT-THHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcC--CCCCchhhhHHHHHHHHHHHHHHHhcC
Confidence            99999999999  999999999999999999999999997

Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the all-alpha helical domain, which consists of four long helices arranged in a bundle with a left-handed twist (coiled-coil), which in turn forms a right-handed superhelix.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 3CWG_B 1BG1_A 1Y1U_B.

>PF02865 STAT_int: STAT protein, protein interaction domain; InterPro: IPR013799 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []

Probab=98.52  E-value=1e-07  Score=78.34  Aligned_cols=45  Identities=31%  Similarity=0.567  Sum_probs=38.2

Q ss_pred             HHHHHHHHHhhh-------cc-----cccccCCChHHHHHHHHHHHHHHHHHhhhcC
Q psy15310         55 RRLEAEEEVEED-------IG-----KEHLYSHDPRALFKTIQACLTQEMRIVQQND   99 (244)
Q Consensus        55 ~~~~~e~~~~~~-------~g-----~~~~y~~~p~elv~~i~~~l~~e~r~v~~a~   99 (244)
                      -..+|++.+++|       ++     |++.|+++|++||++|++||..|+|||++|+
T Consensus        67 Lq~~~~~~~~~~~fl~~~~l~~~~~~~q~~y~~~P~~L~~~I~~~L~~E~~iv~~a~  123 (124)
T PF02865_consen   67 LQQQASRQSQEDNFLLQHNLREIAQNFQNRYQQNPLELARIIRNCLQEEKRIVQEAE  123 (124)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHCT-
T ss_pred             HHHHHHHhcCcchhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            346788888888       22     9999999999999999999999999999985

Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the N-terminal domain, which is responsible for protein interactions. This domain has a multi-helical structure that can be subdivided into two structural sub-domains.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction; PDB: 1BGF_A 1YVL_A.

>KOG3667|consensus

Probab=97.17  E-value=0.00065  Score=69.42  Aligned_cols=128  Identities=16%  Similarity=0.125  Sum_probs=78.1

Q ss_pred             cccccCCChHHHHHHHHHHHHHHHHHhhhcCCCcccCchhHHHHHHHhhhhhhHhhhhcCCCCCCCCCc-----ccchhh
Q psy15310         69 KEHLYSHDPRALFKTIQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARY-----NCTLDM  143 (244)
Q Consensus        69 ~~~~y~~~p~elv~~i~~~l~~e~r~v~~a~phl~~~~~~~~~~~~~lq~~qe~~iiqyq~~~~iGaP~-----~~~LDq  143 (244)
                      +++.|.+||++|+++|++||+.|.|||.+|.=|.+                           ++-|+|+     .... .
T Consensus        88 Lq~~~~~~p~~l~~~i~~~l~~e~rll~ea~~~~~---------------------------~~~~~~~~~~~~~~~q-e  139 (682)
T KOG3667|consen   88 LQSKYQRDPMELARIIRHCLYEESRLLREANRAAQ---------------------------AGSLAPPSQTVVQEKQ-E  139 (682)
T ss_pred             HHHhhccCcHHHHHHHHHHHHHHHHHHHHHhccCc---------------------------ccccCCCccchhhhhh-H
Confidence            78899999999999999999999999999862211                           2334442     1111 3


Q ss_pred             HHHHHHhHHHHHHHHHHH-HHHHHHHHhhhhcccCCCCccCc-hhhHHHHHHHHHHHHhhcccccccCCCcccccccccc
Q psy15310        144 IQGYCESLAEIIWMTRQQ-IKEAERLKNLISKYVDPPNMVDV-LPNLNAQITQCLSHLVTSTFIIEKQPPQVMKTNTRFS  221 (244)
Q Consensus       144 LQ~WfE~LAe~iwqlRQQ-Ik~le~L~~~l~~~~~~~~~~~~-l~~L~~~it~LLs~LVtSSFVVEKQPPQVLKT~tKFt  221 (244)
                      ...-++..++-.|+.-++ ++.++.++....  |........ +.........++..+        .||-.+++|..+|.
T Consensus       140 ~l~~~~~~~~~~~q~~~~s~~~l~~lq~~~~--~~~~~~~~q~~~~~~~~~~~~~~~~--------~~lq~~l~~l~~~r  209 (682)
T KOG3667|consen  140 ELEQKTQDVRNEVQKLEQSTKELEDLQDVED--LRYKTQQAQLLSLNERNSNKTLQQQ--------AQLQRMLNTLDQYR  209 (682)
T ss_pred             HHHHHHhHHHHHHHHHHHhHHHHHHhhhhHH--HHHHHHHhhhccccccchhHHHHHH--------HhHHHHHHHHHHHH
Confidence            444566777778888777 454444442211  110000000 000011111222222        57788999999999


Q ss_pred             hhhhhhhcCCcCC
Q psy15310        222 ATVRLLTGSKLNV  234 (244)
Q Consensus       222 atVRLLVG~kLni  234 (244)
                      +.|+..+|..|++
T Consensus       210 ~Ev~~k~~~~L~~  222 (682)
T KOG3667|consen  210 KEVVEKIAKLLGL  222 (682)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999877664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	244
1y1u_A	585	Structure Of Unphosphorylated Stat5a Length = 585		2e-28
1bg1_A	596	Transcription Factor Stat3bDNA COMPLEX Length = 596		2e-09
3cwg_A	562	Unphosphorylated Mouse Stat3 Core Fragment Length =		2e-09
1yvl_A	683	Structure Of Unphosphorylated Stat1 Length = 683		1e-04
1bf5_A	575	Tyrosine Phosphorylated Stat-1DNA COMPLEX Length =		1e-04

>pdb|1Y1U|A Chain A, Structure Of Unphosphorylated Stat5a Length = 585

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 78/111 (70%), Gaps = 3/111 (2%)
Query: 131 VSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNA 190
             NG     +LD++Q +CE LAEIIW  RQQI+ AE   +L  +   P  + ++L  +NA
Sbjct: 135 AGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAE---HLCQQLPIPGPVEEMLAEVNA 191
Query: 191 QITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
            IT  +S LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct: 192 TITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 242

>pdb|1BG1|A Chain A, Transcription Factor Stat3bDNA COMPLEX Length = 596

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 134 GARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQIT 193
           G   N  LD ++ +  SLAE    TRQQIK+ E L+  +S   DP  +V   P L  +I 
Sbjct: 127 GGPPNICLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYKGDP--IVQHRPMLEERIV 184
Query: 194 QCLSHLVTSTFIIEKQP--------PQVMKTNTRFSATVRLL 227
           +   +L+ S F++E+QP        P V+KT  +F+  VRLL
Sbjct: 185 ELFRNLMKSAFVVERQPCMPMHPDRPLVIKTGVQFTTKVRLL 226

>pdb|3CWG|A Chain A, Unphosphorylated Mouse Stat3 Core Fragment Length = 562

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 134 GARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQIT 193
           G   N  LD ++ +  SLAE    TRQQIK+ E L+  +S   DP  +V   P L  +I 
Sbjct: 127 GGPPNICLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYKGDP--IVQHRPMLEERIV 184
Query: 194 QCLSHLVTSTFIIEKQP--------PQVMKTNTRFSATVRLL 227
           +   +L+ S F++E+QP        P V+KT  +F+  VRLL
Sbjct: 185 ELFRNLMKSAFVVERQPCMPMHPDRPLVIKTGVQFTTKVRLL 226

>pdb|1YVL|A Chain A, Structure Of Unphosphorylated Stat1 Length = 683

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 134 GARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQIT 193
           G   N  LD +Q +   +AE +   RQQ+K+ E L+   +   DP  +      L  +  
Sbjct: 249 GGPPNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDP--ITKNKQVLWDRTF 306
Query: 194 QCLSHLVTSTFIIEKQP--------PQVMKTNTRFSATVRLL 227
                L+ S+F++E+QP        P V+KT  +F+  +RLL
Sbjct: 307 SLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLL 348

>pdb|1BF5|A Chain A, Tyrosine Phosphorylated Stat-1DNA COMPLEX Length = 575

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 134 GARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQIT 193
           G   N  LD +Q +   +AE +   RQQ+K+ E L+   +   DP  +      L  +  
Sbjct: 114 GGPPNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDP--ITKNKQVLWDRTF 171
Query: 194 QCLSHLVTSTFIIEKQP--------PQVMKTNTRFSATVRLL 227
                L+ S+F++E+QP        P V+KT  +F+  +RLL
Sbjct: 172 SLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLL 213

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
1y1u_A	585	Signal transducer and activator of transcription;	5e-26
1y1u_A	585	Signal transducer and activator of transcription;	9e-05
1bg1_A	596	Protein (transcription factor STAT3B); protein-DNA	1e-23
1bf5_A	575	Signal transducer and activator of transcription 1	4e-22
1yvl_A	683	Signal transducer and activator of transcription 1	2e-21
1yvl_A	683	Signal transducer and activator of transcription 1	1e-04
1uur_A	473	Stata protein, STAT protein; transcription activat	6e-11
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-04

>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus} Length = 585

 Score =  104 bits (261), Expect = 5e-26
 Identities = 79/238 (33%), Positives = 123/238 (51%), Gaps = 11/238 (4%)

Query: 11  ALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQERRRLEAEEEVEEDIGKE 70
           A+ Q   Q+    +E   + ++T+ ++  ++  +     Q QE  R++A+      +  +
Sbjct: 9   AMSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQ 68

Query: 71  HLYSHDPRA--LFKTIQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQN 128
              S +        +++  L +E + +QQ    L     +   + ++   T  +      
Sbjct: 69  ERMSRETALQQKQVSLETWLQREAQTLQQYRVELAEK-HQKTLQLLRKQQTIILDDELIQ 127

Query: 129 -----DPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVD 183
                    NG     +LD++Q +CE LAEIIW  RQQI+ AE L     +   P  + +
Sbjct: 128 WKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAEHLC---QQLPIPGPVEE 184

Query: 184 VLPNLNAQITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
           +L  +NA IT  +S LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct: 185 MLAEVNATITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 242

>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus} Length = 585

 Score = 42.1 bits (98), Expect = 9e-05
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 1   MDQLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQE 53
           ++  L  + + L Q R +LA+  ++T  L+   Q  IL+ EL++WKR QQL  
Sbjct: 84  LETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWKRRQQLAG 136

>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A Length = 596

 Score = 98.0 bits (243), Expect = 1e-23
 Identities = 49/217 (22%), Positives = 85/217 (39%), Gaps = 23/217 (10%)

Query: 44  KWKREQQLQERRRLEAEEEVEEDIGKEHLYSHDPRALFKTIQACLTQEMRIVQQNDPHLY 103
           K K  + LQ+       + ++     + L  ++     + +Q    ++M           
Sbjct: 35  KMKVVENLQDDFDFN-YKTLKSQGDMQDLNGNNQSVTRQKMQQL--EQMLTALDQMRRSI 91

Query: 104 SHDPRALFKTIQACLTQEM-------RIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIW 156
             +   L   ++              +  QQ      G   N  LD ++ +  SLAE   
Sbjct: 92  VSELAGLLSAMEYVQKTLTDEELADWKRRQQI--ACIGGPPNICLDRLENWITSLAESQL 149

Query: 157 MTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFIIEKQP------ 210
            TRQQIK+ E L+  +S       +V   P L  +I +   +L+ S F++E+QP      
Sbjct: 150 QTRQQIKKLEELQQKVS--YKGDPIVQHRPMLEERIVELFRNLMKSAFVVERQPCMPMHP 207

Query: 211 --PQVMKTNTRFSATVRLLTGS-KLNVYMTPPQVIIR 244
             P V+KT  +F+  VRLL    +LN  +     I +
Sbjct: 208 DRPLVIKTGVQFTTKVRLLVKFPELNYQLKIKVCIDK 244

>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 Length = 575

 Score = 93.4 bits (231), Expect = 4e-22
 Identities = 43/206 (20%), Positives = 76/206 (36%), Gaps = 16/206 (7%)

Query: 49  QQLQERRRLEAEE---EVEEDIGKEHLYSHDPRALFKTIQACLTQEMRIVQQNDPHLYSH 105
           + LQ+    + +       E  G         + L K +   L  + + V      L + 
Sbjct: 29  EDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNV 88

Query: 106 DPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEA 165
                   I   L +  R  Q       G   N  LD +Q +   +AE +   RQQ+K+ 
Sbjct: 89  TELTQNALINDELVEWKRRQQSA---CIGGPPNACLDQLQNWFTIVAESLQQVRQQLKKL 145

Query: 166 ERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFIIEKQP--------PQVMKTN 217
           E L+   +   +   +      L  +       L+ S+F++E+QP        P V+KT 
Sbjct: 146 EELEQKYT--YEHDPITKNKQVLWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTG 203

Query: 218 TRFSATVRLLTGSKLNVYMTPPQVII 243
            +F+  +RLL   +   Y    +V+ 
Sbjct: 204 VQFTVKLRLLVKLQELNYNLKVKVLF 229

>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} Length = 683

 Score = 91.9 bits (227), Expect = 2e-21
 Identities = 38/212 (17%), Positives = 76/212 (35%), Gaps = 15/212 (7%)

Query: 44  KWKREQQLQERRRLEAEEEVEEDIGKEHLYSHDPRALFKTIQACLTQ--EMRIVQQNDPH 101
           + K  + LQ+    + +     +     +   D +     ++         R    +   
Sbjct: 159 EIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKII 218

Query: 102 LYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQ 161
              +        +      E +  QQ      G   N  LD +Q +   +AE +   RQQ
Sbjct: 219 ELLNVTELTQNALINDELVEWKRRQQ--SACIGGPPNACLDQLQNWFTIVAESLQQVRQQ 276

Query: 162 IKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFIIEKQP--------PQV 213
           +K+ E L+   +   +   +      L  +       L+ S+F++E+QP        P V
Sbjct: 277 LKKLEELEQKYT--YEHDPITKNKQVLWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLV 334

Query: 214 MKTNTRFSATVRLLTGSK-LNVYMTPPQVIIR 244
           +KT  +F+  +RLL   + LN  +    +  +
Sbjct: 335 LKTGVQFTVKLRLLVKLQELNYNLKVKVLFDK 366

>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} Length = 683

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 3   QLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQE 53
            LL      L   R ++   + E   + E TQ  ++N EL++WKR QQ   
Sbjct: 197 LLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSAC 247

>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A* Length = 473

 Score = 60.8 bits (146), Expect = 6e-11
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 9/100 (9%)

Query: 149 ESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTS-----T 203
             ++ +    +  I E   L  L +   D       L  L+ +I   L+   ++      
Sbjct: 70  TEMSALDATKKGMILEPTDLAKLFALKQDLQIQFKQLSLLHNEIQSILNPQHSAPKPNVA 129

Query: 204 FIIEKQP-PQVMKTNTRFSA---TVRLLTGSKLNVYMTPP 239
            +++ QP P V+    +       V +LTG++ N ++  P
Sbjct: 130 LVLKSQPFPVVISKGKQLGENQLVVLVLTGARSNFHINGP 169

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 12/37 (32%)

Query: 159 RQQIKEAE-RLKNLISKYVDPPNMVDVLPNL--NAQI 192
           +Q +K+ +  LK     Y D     D  P L   A +
Sbjct: 19  KQALKKLQASLK----LYAD-----DSAPALAIKATM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
1y1u_A	585	Signal transducer and activator of transcription;	100.0
1yvl_A	683	Signal transducer and activator of transcription 1	100.0
1bg1_A	596	Protein (transcription factor STAT3B); protein-DNA	100.0
1bf5_A	575	Signal transducer and activator of transcription 1	100.0
1uur_A	473	Stata protein, STAT protein; transcription activat	99.54
1bgf_A	124	STAT-4; transcription factor, regulation, DNA-bind	98.38
1yvl_A	683	Signal transducer and activator of transcription 1	98.03
1y1u_A	585	Signal transducer and activator of transcription;	83.58

>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}

Probab=100.00  E-value=1.3e-47  Score=375.62  Aligned_cols=160  Identities=51%  Similarity=0.772  Sum_probs=156.9

Q ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCChHHHH
Q psy15310          2 DQLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQERRRLEAEEEVEEDIGKEHLYSHDPRALF   81 (244)
Q Consensus         2 ~~~~~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~el~~wk~~qq~~~~~~~~~e~~~~~~~g~~~~y~~~p~elv   81 (244)
                      +++|+.+++.|+++|+++++++++++..++.+|..+|++||.+|||+||+|                             
T Consensus        85 ~~~lq~~~~~L~~~R~~l~~~~~~~l~~~~~lq~~ll~~eL~~WKrrQq~a-----------------------------  135 (585)
T 1y1u_A           85 ETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWKRRQQLA-----------------------------  135 (585)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH-----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------
Confidence            467999999999999999999999999999999999999999999999999                             


Q ss_pred             HHHHHHHHHHHHHhhhcCCCcccCchhHHHHHHHhhhhhhHhhhhcCCCCCCCCCcccchhhHHHHHHhHHHHHHHHHHH
Q psy15310         82 KTIQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQ  161 (244)
Q Consensus        82 ~~i~~~l~~e~r~v~~a~phl~~~~~~~~~~~~~lq~~qe~~iiqyq~~~~iGaP~~~~LDqLQ~WfE~LAe~iwqlRQQ  161 (244)
                                                                        |||||++++||+||+|||.+||++||+|||
T Consensus       136 --------------------------------------------------~iG~p~~~~LD~lQ~w~e~lae~l~q~rqq  165 (585)
T 1y1u_A          136 --------------------------------------------------GNGGPPEGSLDVLQSWCEKLAEIIWQNRQQ  165 (585)
T ss_dssp             --------------------------------------------------TTTCCCCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------------cCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence                                                              999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcccCCCCccCchhhHHHHHHHHHHHHhhcccccccCCCcccccccccchhhhhhhcCCcCCcCCCCcc
Q psy15310        162 IKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV  241 (244)
Q Consensus       162 Ik~le~L~~~l~~~~~~~~~~~~l~~L~~~it~LLs~LVtSSFVVEKQPPQVLKT~tKFtatVRLLVG~kLni~mnpPqV  241 (244)
                      ++++++|+++++  |++| +...++.+++++++|++.||+||||||+||||||||++||+|+||||||++||+||+||+|
T Consensus       166 l~~l~~l~~~~~--~~~~-~~~~l~~l~~~~~~ll~~Lv~ssfVVekQPP~VlKt~~kF~~~vRlLvg~~Ln~~~~~~~V  242 (585)
T 1y1u_A          166 IRRAEHLCQQLP--IPGP-VEEMLAEVNATITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV  242 (585)
T ss_dssp             HHHHHHHHTTSC--CCST-HHHHHHHHHHHHHHHHHHHHHHTEEEEECCCSEEESSCCEEEEEEESTTTTTTCTTSCCBE
T ss_pred             HHHHHHhhhcCC--CCCC-ccccHHHHHHHHHHHHHHHHHhheEeecCCCceEEecceEEEEEeeeeccccccccCCcee
Confidence            999999999999  9998 8899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cc
Q psy15310        242 II  243 (244)
Q Consensus       242 k~  243 (244)
                      +|
T Consensus       243 ~~  244 (585)
T 1y1u_A          243 KA  244 (585)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-46  Score=372.01  Aligned_cols=182  Identities=23%  Similarity=0.309  Sum_probs=169.0

Q ss_pred             HHHHHHHhhh-------cc-----cccccCCChHHHHHHHHHHHHHHHHHhhhcC-----C------------CcccC-c
Q psy15310         57 LEAEEEVEED-------IG-----KEHLYSHDPRALFKTIQACLTQEMRIVQQND-----P------------HLYSH-D  106 (244)
Q Consensus        57 ~~~e~~~~~~-------~g-----~~~~y~~~p~elv~~i~~~l~~e~r~v~~a~-----p------------hl~~~-~  106 (244)
                      .+|||.++||       ||     |+++|++||++||+||++||+.|+|||++|.     |            |.+++ +
T Consensus        66 ~q~~~~~~e~~fLlq~~l~~~~~~~q~~y~~~P~~L~~~I~~~L~~E~riv~~A~~~~~~~~~~~~~~~~~~~~~~i~~~  145 (683)
T 1yvl_A           66 DQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIIYSCLKEERKILENAQRFNQAQSGNIQSTVMLDKQKELDSK  145 (683)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCGGGGGC------CHHHHHHHHHHHH
T ss_pred             HHHHhccCccchHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccccccchhHHHHHHH
Confidence            6899999998       44     9999999999999999999999999999997     1            56676 8


Q ss_pred             hhHHHHHH--------HhhhhhhHhhhhcCC-------------------------------------------------
Q psy15310        107 PRALFKTI--------QACLTQEMRIVQQND-------------------------------------------------  129 (244)
Q Consensus       107 ~~~~~~~~--------~lq~~qe~~iiqyq~-------------------------------------------------  129 (244)
                      +++++..+        +|++.||||.++|+.                                                 
T Consensus       146 v~~lr~~~q~~e~~ik~Le~~Qe~f~~~y~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~l~~~R~~~~~k~~~~l~~~~  225 (683)
T 1yvl_A          146 VRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTE  225 (683)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------CHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988877        899999999998732                                                 


Q ss_pred             -------------------CCCCCCCcccchhhHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCccCchhhHHH
Q psy15310        130 -------------------PVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNA  190 (244)
Q Consensus       130 -------------------~~~iGaP~~~~LDqLQ~WfE~LAe~iwqlRQQIk~le~L~~~l~~~~~~~~~~~~l~~L~~  190 (244)
                                         .||||||++++||+||+|||.+||++|++|||++++++++++++  |+++|++..++.+++
T Consensus       226 ~lq~~ll~~eL~~WKrrQq~a~~G~p~~~~Ld~lQ~w~e~lae~l~q~rqql~~l~~l~~~~~--~~~~p~~~~~~~l~~  303 (683)
T 1yvl_A          226 LTQNALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYT--YEHDPITKNKQVLWD  303 (683)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHTCSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHhhcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCccccchHHHHH
Confidence                               79999999999999999999999999999999999999999999  999999999999999


Q ss_pred             HHHHHHHHHhhcccccccCC--------Ccccccccccchhhhhhhc-CCcCCcCCCCcccc
Q psy15310        191 QITQCLSHLVTSTFIIEKQP--------PQVMKTNTRFSATVRLLTG-SKLNVYMTPPQVII  243 (244)
Q Consensus       191 ~it~LLs~LVtSSFVVEKQP--------PQVLKT~tKFtatVRLLVG-~kLni~mnpPqVk~  243 (244)
                      ++++|++.||+||||||+||        ||||||++||+|+||+||| +++|   ++|+|+|
T Consensus       304 ~~~~ll~~Lv~ssfVVekQP~mp~~pqrPqVlKT~~kF~~~vRlLv~~~~ln---~~~~Vk~  362 (683)
T 1yvl_A          304 RTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELN---YNLKVKV  362 (683)
T ss_dssp             HHHHHHHHHHHHTEEEEEEEECTTCTTSTTEEETTSEEEEEEEESSCCGGGT---TCCEEEE
T ss_pred             HHHHHHHHHHHhheeeeccCCccCCCCCCceEeecceeeeeeeeeecccccc---cCCceeE
Confidence            99999999999999999999        9999999999999999999 8998   4667764

>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A

Probab=100.00  E-value=1.2e-43  Score=347.94  Aligned_cols=156  Identities=34%  Similarity=0.488  Sum_probs=151.6

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCChHHHHHH
Q psy15310          4 LLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQERRRLEAEEEVEEDIGKEHLYSHDPRALFKT   83 (244)
Q Consensus         4 ~~~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~el~~wk~~qq~~~~~~~~~e~~~~~~~g~~~~y~~~p~elv~~   83 (244)
                      .|+.+++.|+++|+++++++++++..++.+|..+|++||.+|||+||+|                               
T Consensus        76 ~l~~~~~~l~~~R~e~~~k~~~~l~~~~~lq~~ll~~EL~eWKrrQq~a-------------------------------  124 (596)
T 1bg1_A           76 QLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQIA-------------------------------  124 (596)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH-------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-------------------------------
Confidence            4899999999999999999999999999999999999999999999999                               


Q ss_pred             HHHHHHHHHHHhhhcCCCcccCchhHHHHHHHhhhhhhHhhhhcCCCCCCCCCcccchhhHHHHHHhHHHHHHHHHHHHH
Q psy15310         84 IQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIK  163 (244)
Q Consensus        84 i~~~l~~e~r~v~~a~phl~~~~~~~~~~~~~lq~~qe~~iiqyq~~~~iGaP~~~~LDqLQ~WfE~LAe~iwqlRQQIk  163 (244)
                                                                      |||||++++||+||+|||.+||++||+||||+
T Consensus       125 ------------------------------------------------~iG~p~~~~LD~lQ~w~e~lae~l~q~rqql~  156 (596)
T 1bg1_A          125 ------------------------------------------------CIGGPPNICLDRLENWITSLAESQLQTRQQIK  156 (596)
T ss_dssp             ------------------------------------------------HTTCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------------------cCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                            99999999999999999999999999999999


Q ss_pred             HHHHHHhhhhcccCCCCccCchhhHHHHHHHHHHHHhhcccccccCC--------Ccccccccccchhhhhhhc-CCcCC
Q psy15310        164 EAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFIIEKQP--------PQVMKTNTRFSATVRLLTG-SKLNV  234 (244)
Q Consensus       164 ~le~L~~~l~~~~~~~~~~~~l~~L~~~it~LLs~LVtSSFVVEKQP--------PQVLKT~tKFtatVRLLVG-~kLni  234 (244)
                      ++++++++++  |++||++..++.+++++++|++.||+|||||||||        ||||||++||+|+|||||| +++|+
T Consensus       157 ~l~~l~~k~~--~~~dpi~~~~~~l~~~~~~ll~~Lv~ssFVVEkQP~mp~~p~rPqVlKT~~kFt~~vRlLv~l~~ln~  234 (596)
T 1bg1_A          157 KLEELQQKVS--YKGDPIVQHRPMLEERIVELFRNLMKSAFVVERQPCMPMHPDRPLVIKTGVQFTTKVRLLVKFPELNY  234 (596)
T ss_dssp             HHHHHHHHSC--CTTCTTTTTHHHHHHHHHHHHHHHHHHHEEEEEEEECTTCTTCTTEEETTSCEEEEEEESSCCGGGTT
T ss_pred             HHHHHHhhcC--CCCCccccchHHHHHHHHHHHHHHHHhheeeeccCCCccCCCCCceEeecceEEEeehhhhccccccC
Confidence            9999999999  99999999999999999999999999999999999        9999999999999999999 99998


Q ss_pred             cCCCCcccc
Q psy15310        235 YMTPPQVII  243 (244)
Q Consensus       235 ~mnpPqVk~  243 (244)
                         +|+|+|
T Consensus       235 ---~~~Vkv  240 (596)
T 1bg1_A          235 ---QLKIKV  240 (596)
T ss_dssp             ---TCEEEE
T ss_pred             ---CcceEE
Confidence               667764

>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1

Probab=100.00  E-value=1.6e-43  Score=345.83  Aligned_cols=156  Identities=30%  Similarity=0.434  Sum_probs=151.2

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCChHHHHHH
Q psy15310          4 LLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQERRRLEAEEEVEEDIGKEHLYSHDPRALFKT   83 (244)
Q Consensus         4 ~~~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~el~~wk~~qq~~~~~~~~~e~~~~~~~g~~~~y~~~p~elv~~   83 (244)
                      .++.++++|+++|+++++++++++..++.+|..++++||.+|||+||+|                               
T Consensus        63 ~l~~~~~~l~~~R~~~~~~~~~~~~~~~~lq~~ll~~eL~~WkrrQq~a-------------------------------  111 (575)
T 1bf5_A           63 LLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSA-------------------------------  111 (575)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-------------------------------
Confidence            5899999999999999999999999999999999999999999999999                               


Q ss_pred             HHHHHHHHHHHhhhcCCCcccCchhHHHHHHHhhhhhhHhhhhcCCCCCCCCCcccchhhHHHHHHhHHHHHHHHHHHHH
Q psy15310         84 IQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIK  163 (244)
Q Consensus        84 i~~~l~~e~r~v~~a~phl~~~~~~~~~~~~~lq~~qe~~iiqyq~~~~iGaP~~~~LDqLQ~WfE~LAe~iwqlRQQIk  163 (244)
                                                                      |||||++++||+||+|||.+||++||+||||+
T Consensus       112 ------------------------------------------------~iG~p~~~~Ld~lQ~w~e~lae~l~q~rqql~  143 (575)
T 1bf5_A          112 ------------------------------------------------CIGGPPNACLDQLQNWFTIVAESLQQVRQQLK  143 (575)
T ss_dssp             ------------------------------------------------HTTSSCCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------------------cCCCCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                            99999999999999999999999999999999


Q ss_pred             HHHHHHhhhhcccCCCCccCchhhHHHHHHHHHHHHhhcccccccCC--------Ccccccccccchhhhhhhc-CCcCC
Q psy15310        164 EAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFIIEKQP--------PQVMKTNTRFSATVRLLTG-SKLNV  234 (244)
Q Consensus       164 ~le~L~~~l~~~~~~~~~~~~l~~L~~~it~LLs~LVtSSFVVEKQP--------PQVLKT~tKFtatVRLLVG-~kLni  234 (244)
                      ++++++++++  |++||++..++.+++++++|++.||+||||||+||        ||||||++||+|+|||||| +++|+
T Consensus       144 ~l~~l~~k~~--~~~dp~~~~~~~l~~~~~~ll~~Lv~ssFVVekQP~mp~~~~rPqVlKT~~kFt~~vRlLv~~~~ln~  221 (575)
T 1bf5_A          144 KLEELEQKYT--YEHDPITKNKQVLWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNY  221 (575)
T ss_dssp             HHHHHHHHCC--CTTCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCTTCTTCTTEEETTSEEEEEEEETTCCGGGTT
T ss_pred             HHHHHHhhcC--CCCCccccchHHHHHHHHHHHHHHHHhheeeeccCCCccCCCCCceEeecceeeEeeeehhccccccc
Confidence            9999999999  99999999999999999999999999999999999        9999999999999999999 99998


Q ss_pred             cCCCCcccc
Q psy15310        235 YMTPPQVII  243 (244)
Q Consensus       235 ~mnpPqVk~  243 (244)
                         +|.|+|
T Consensus       222 ---~~~Vk~  227 (575)
T 1bf5_A          222 ---NLKVKV  227 (575)
T ss_dssp             ---TCEEEE
T ss_pred             ---CcceEE
Confidence               566664

>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A*

Probab=99.54  E-value=4.1e-16  Score=150.09  Aligned_cols=76  Identities=22%  Similarity=0.353  Sum_probs=64.0

Q ss_pred             HHHHHHHHHhhhhcccCCCCccCchhhHHHHHHHHHHHH-----hhcccccccCC-Cccccccccc---chhhhhhhcCC
Q psy15310        161 QIKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHL-----VTSTFIIEKQP-PQVMKTNTRF---SATVRLLTGSK  231 (244)
Q Consensus       161 QIk~le~L~~~l~~~~~~~~~~~~l~~L~~~it~LLs~L-----VtSSFVVEKQP-PQVLKT~tKF---tatVRLLVG~k  231 (244)
                      +++++++|++.+.  +..    ..++.+...++.+++.+     ++||||||||| ||||||++||   +++||+|||++
T Consensus        88 ~l~~l~~l~q~L~--~~~----~~l~~l~~el~~~l~~~~~~~~~~safVvekQP~PqVlkt~~kf~~d~~~VrlLvG~k  161 (473)
T 1uur_A           88 DLAKLFALKQDLQ--IQF----KQLSLLHNEIQSILNPQHSAPKPNVALVLKSQPFPVVISKGKQLGENQLVVLVLTGAR  161 (473)
T ss_dssp             HHHHHHHHHHHHH--HHH----HHHHHHHHHHHHHHSTTSCCCCSSCEEEEEECCCSCEEETTCBCCTTTSEEEEECCSS
T ss_pred             HHhHHHHHHHHhH--hhh----hHHHHHHHHHHHHHhccCCCCCceEEEEEEcCCCCeEEEecccccccceEEEEeeccc
Confidence            4556666655554  211    35666888999999999     99999999999 9999999999   99999999999


Q ss_pred             cCCcCCCCcccc
Q psy15310        232 LNVYMTPPQVII  243 (244)
Q Consensus       232 Lni~mnpPqVk~  243 (244)
                      ||+||+|| |+|
T Consensus       162 l~~~~~~p-V~a  172 (473)
T 1uur_A          162 SNFHINGP-VKA  172 (473)
T ss_dssp             CCEEEEEE-EEE
T ss_pred             cCcccCCc-eEE
Confidence            99999999 986

>1bgf_A STAT-4; transcription factor, regulation, DNA-binding; 1.45A {Mus musculus} SCOP: a.90.1.1

Probab=98.38  E-value=2.4e-07  Score=75.33  Aligned_cols=44  Identities=18%  Similarity=0.309  Sum_probs=39.0

Q ss_pred             HHHHHHHHhhh-------cc-----cccccCCChHHHHHHHHHHHHHHHHHhhhcC
Q psy15310         56 RLEAEEEVEED-------IG-----KEHLYSHDPRALFKTIQACLTQEMRIVQQND   99 (244)
Q Consensus        56 ~~~~e~~~~~~-------~g-----~~~~y~~~p~elv~~i~~~l~~e~r~v~~a~   99 (244)
                      -.+|++.++||       |+     |++.|++||++||++|++||..|+|||++|.
T Consensus        66 ~~~~~~~~~e~~fL~q~~L~~~~~~~q~~y~~nP~~L~~~i~~~L~~E~~iv~~a~  121 (124)
T 1bgf_A           66 DEQLGRVSKEKNLLLIHNLKRIRKVLQGKFHGNPMHVAVVISNCLREERRILAAAN  121 (124)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHcCCchhHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhh
Confidence            35777878887       33     9999999999999999999999999999986

>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}

Probab=98.03  E-value=5.1e-06  Score=83.29  Aligned_cols=50  Identities=32%  Similarity=0.418  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHH
Q psy15310          3 QLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQ   52 (244)
Q Consensus         3 ~~~~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~el~~wk~~qq~~   52 (244)
                      ..|+.+++.|+++|+++++++++++..++.+|..+|++||.+|||+||+|
T Consensus       197 ~~lq~~~~~l~~~R~~~~~k~~~~l~~~~~lq~~ll~~eL~~WKrrQq~a  246 (683)
T 1yvl_A          197 LLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSA  246 (683)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence            36899999999999999999999999999999999999999999999998

>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}

Probab=83.58  E-value=3.2  Score=41.13  Aligned_cols=35  Identities=23%  Similarity=0.119  Sum_probs=29.9

Q ss_pred             CCcccC-chhHHHHHH--------HhhhhhhHhhhhcCCCCCCC
Q psy15310        100 PHLYSH-DPRALFKTI--------QACLTQEMRIVQQNDPVSNG  134 (244)
Q Consensus       100 phl~~~-~~~~~~~~~--------~lq~~qe~~iiqyq~~~~iG  134 (244)
                      .|..|+ ++++++..+        +|++.||||.++|+++..+-
T Consensus        13 ~~~eI~~~v~~l~~~~q~~e~~~k~Le~~Qe~F~~~y~~~~~~~   56 (585)
T 1y1u_A           13 KHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQ   56 (585)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhH
Confidence            378887 999999877        99999999999999877543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	244
d1bf5a2	252	b.2.5.5 (A:317-568) STAT-1, DNA-binding domain {Hu	3e-11
d1bg1a1	186	a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus)	4e-11
d1bg1a1	186	a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus)	0.001
d1bg1a2	254	b.2.5.5 (A:322-575) STAT3b {Mouse (Mus musculus) [	7e-10
d1bf5a1	181	a.47.1.1 (A:136-316) STAT-1, coiled coil domain {H	6e-09

>d1bf5a2 b.2.5.5 (A:317-568) STAT-1, DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 252

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: STAT DNA-binding domain
domain: STAT-1, DNA-binding domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (144), Expect = 3e-11
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 8/48 (16%)

Query: 204 FIIEKQP--------PQVMKTNTRFSATVRLLTGSKLNVYMTPPQVII 243
           F++E+QP        P V+KT  +F+  +RLL   +   Y    +V+ 
Sbjct: 1   FVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYNLKVKVLF 48

>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]} Length = 186

class: All alpha proteins
fold: STAT-like
superfamily: STAT
family: STAT
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.0 bits (140), Expect = 4e-11
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 133 NGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQI 192
            G   N  LD ++ +  SLAE    TRQQIK+ E L+  +S   DP  +V   P L  +I
Sbjct: 117 IGGPPNICLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYKGDP--IVQHRPMLEERI 174

Query: 193 TQCLSHLVTSTF 204
            +   +L+ S F
Sbjct: 175 VELFRNLMKSAF 186

>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]} Length = 186

class: All alpha proteins
fold: STAT-like
superfamily: STAT
family: STAT
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 16/51 (31%), Positives = 22/51 (43%)

Query: 3   QLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQE 53
           Q L   + AL Q R  +   L      +E  Q  + + EL  WKR QQ+  
Sbjct: 66  QQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQIAC 116

>d1bg1a2 b.2.5.5 (A:322-575) STAT3b {Mouse (Mus musculus) [TaxId: 10090]} Length = 254

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: STAT DNA-binding domain
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.3 bits (133), Expect = 7e-10
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 9/49 (18%)

Query: 205 IIEKQP--------PQVMKTNTRFSATVRLLTGS-KLNVYMTPPQVIIR 244
           ++E+QP        P V+KT  +F+  VRLL    +LN  +     I +
Sbjct: 1   VVERQPCMPMHPDRPLVIKTGVQFTTKVRLLVKFPELNYQLKIKVCIDK 49

>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human (Homo sapiens) [TaxId: 9606]} Length = 181

class: All alpha proteins
fold: STAT-like
superfamily: STAT
family: STAT
domain: STAT-1, coiled coil domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 6e-09
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 133 NGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQI 192
            G   N  LD +Q +   +AE +   RQQ+K+ E L+   +   DP  +      L  + 
Sbjct: 113 IGGPPNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDP--ITKNKQVLWDRT 170

Query: 193 TQCLSHLVTST 203
                 L+ S+
Sbjct: 171 FSLFQQLIQSS 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d1bg1a1	186	STAT3b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1bf5a1	181	STAT-1, coiled coil domain {Human (Homo sapiens) [	99.98
d1bgfa_	124	Transcription factor STAT-4 N-domain {Mouse (Mus m	98.24

>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: STAT
family: STAT
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-35  Score=252.27  Aligned_cols=121  Identities=33%  Similarity=0.423  Sum_probs=118.9

Q ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCChHHHHH
Q psy15310          3 QLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQERRRLEAEEEVEEDIGKEHLYSHDPRALFK   82 (244)
Q Consensus         3 ~~~~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~el~~wk~~qq~~~~~~~~~e~~~~~~~g~~~~y~~~p~elv~   82 (244)
                      +.++.+.++|+++|+++++++++++..++.+|+.+||+||.+|||+||+|                              
T Consensus        66 ~~l~~~~~~L~~~R~~l~~k~~~~l~~l~~lq~~ll~~eL~~WKrrQQlA------------------------------  115 (186)
T d1bg1a1          66 QQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQIA------------------------------  115 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------
Confidence            46889999999999999999999999999999999999999999999999                              


Q ss_pred             HHHHHHHHHHHHhhhcCCCcccCchhHHHHHHHhhhhhhHhhhhcCCCCCCCCCcccchhhHHHHHHhHHHHHHHHHHHH
Q psy15310         83 TIQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQI  162 (244)
Q Consensus        83 ~i~~~l~~e~r~v~~a~phl~~~~~~~~~~~~~lq~~qe~~iiqyq~~~~iGaP~~~~LDqLQ~WfE~LAe~iwqlRQQI  162 (244)
                                                                       |||||++++||+||+|||++||++|++|+++
T Consensus       116 -------------------------------------------------~iG~P~~~~LDqLQ~W~e~lAe~i~q~Rqql  146 (186)
T d1bg1a1         116 -------------------------------------------------CIGGPPNICLDRLENWITSLAESQLQTRQQI  146 (186)
T ss_dssp             -------------------------------------------------HTTCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------------------hCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence                                                             9999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhcccCCCCccCchhhHHHHHHHHHHHHhhccc
Q psy15310        163 KEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTF  204 (244)
Q Consensus       163 k~le~L~~~l~~~~~~~~~~~~l~~L~~~it~LLs~LVtSSF  204 (244)
                      +++++++++++  |++||++..+|.+++++++||++||+|||
T Consensus       147 k~l~~l~~k~~--y~~dpi~~~~~~L~~~~~~Ll~~Lv~ssF  186 (186)
T d1bg1a1         147 KKLEELQQKVS--YKGDPIVQHRPMLEERIVELFRNLMKSAF  186 (186)
T ss_dssp             HHHHHHHHHSC--CTTCTTTTTHHHHHHHHHHHHHHHHHHHE
T ss_pred             HHHHHHHHhcC--CCCCccccchhHHHHHHHHHHHHHHhccC
Confidence            99999999999  99999999999999999999999999999

>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: STAT-like
superfamily: STAT
family: STAT
domain: STAT-1, coiled coil domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.4e-32  Score=233.87  Aligned_cols=119  Identities=27%  Similarity=0.338  Sum_probs=116.9

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCChHHHHHH
Q psy15310          4 LLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQERRRLEAEEEVEEDIGKEHLYSHDPRALFKT   83 (244)
Q Consensus         4 ~~~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~el~~wk~~qq~~~~~~~~~e~~~~~~~g~~~~y~~~p~elv~~   83 (244)
                      .|+++...|++.|+++++++++++..++.+|+.+|++||.+|||+||+|                               
T Consensus        63 ~l~~~~~~L~~~R~e~~~k~~~~l~~~~~lq~~ll~~eL~eWKr~QQ~a-------------------------------  111 (181)
T d1bf5a1          63 LLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSA-------------------------------  111 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Confidence            5889999999999999999999999999999999999999999999999                               


Q ss_pred             HHHHHHHHHHHhhhcCCCcccCchhHHHHHHHhhhhhhHhhhhcCCCCCCCCCcccchhhHHHHHHhHHHHHHHHHHHHH
Q psy15310         84 IQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIK  163 (244)
Q Consensus        84 i~~~l~~e~r~v~~a~phl~~~~~~~~~~~~~lq~~qe~~iiqyq~~~~iGaP~~~~LDqLQ~WfE~LAe~iwqlRQQIk  163 (244)
                                                                      |||||++++||+||+|||++||++|++|++++
T Consensus       112 ------------------------------------------------~iG~p~~~~LdqLQ~W~e~lae~l~q~rqqlk  143 (181)
T d1bf5a1         112 ------------------------------------------------CIGGPPNACLDQLQNWFTIVAESLQQVRQQLK  143 (181)
T ss_dssp             ------------------------------------------------HTTSSCCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------------------hcCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                            99999999999999999999999999999999


Q ss_pred             HHHHHHhhhhcccCCCCccCchhhHHHHHHHHHHHHhhcc
Q psy15310        164 EAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTST  203 (244)
Q Consensus       164 ~le~L~~~l~~~~~~~~~~~~l~~L~~~it~LLs~LVtSS  203 (244)
                      ++++++++++  |++||++.++|.+++++++|+++||+||
T Consensus       144 kl~el~~k~~--y~~dpi~~~~~~L~~~~~~Ll~~Lv~ss  181 (181)
T d1bf5a1         144 KLEELEQKYT--YEHDPITKNKQVLWDRTFSLFQQLIQSS  181 (181)
T ss_dssp             HHHHHHHHCC--CTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcc--cCCCccccchHHHHHHHHHHHHHHhhcC
Confidence            9999999999  9999999999999999999999999997

>d1bgfa_ a.90.1.1 (A:) Transcription factor STAT-4 N-domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Transcription factor STAT-4 N-domain
superfamily: Transcription factor STAT-4 N-domain
family: Transcription factor STAT-4 N-domain
domain: Transcription factor STAT-4 N-domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=2.1e-07  Score=73.87  Aligned_cols=43  Identities=19%  Similarity=0.319  Sum_probs=36.9

Q ss_pred             HHHHHHHhhh-------cc-----cccccCCChHHHHHHHHHHHHHHHHHhhhcC
Q psy15310         57 LEAEEEVEED-------IG-----KEHLYSHDPRALFKTIQACLTQEMRIVQQND   99 (244)
Q Consensus        57 ~~~e~~~~~~-------~g-----~~~~y~~~p~elv~~i~~~l~~e~r~v~~a~   99 (244)
                      .++++...+|       |+     |++.|+++|++|+++|++||..|+|||++|.
T Consensus        67 ~q~~~~~~e~~fl~~~~l~~~~~~~q~~y~~nP~~L~~iI~~cL~~E~riv~~A~  121 (124)
T d1bgfa_          67 EQLGRVSKEKNLLLIHNLKRIRKVLQGKFHGNPMHVAVVISNCLREERRILAAAN  121 (124)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3556666666       22     8999999999999999999999999999997