Psyllid ID: psy15420

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
PCILSFVPVGLREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQYNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSNQNPLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMSQRKCDLTY
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcHccccccccccccccccccccccHcccccccccccEEEEEccHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
pcilsfvpvglrEQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQYNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEdrnsvdinadlwffehnkrgsnqnplsskrgpkgfnrmksrrkavtvsgPYIVYMLRDEEIIEDWTIIKKAMSqrkcdlty
Flexible Loop (DISEMBL)
pcilsfvpvglreqlyrERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQYNAEEQATRQNLENEKSLLYDHMKEELEEKIRrleedrnsvdINADLWFfehnkrgsnqnplsskrgpkgfnrmksrrkavtvsgpyivYMLRDEEIIEDWTIIKKAmsqrkcdlty
Low Complexity Region (SEG)
PCILSFVPVGLREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQYNAEEQATRQNLENEKSLLYDHMkeeleekirrleeDRNSVDINADLWFFEHNKRGSNQNPLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMSQRKCDLTY
Disordered region (IsUnstruct)
*CILSFVPVGLREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQ******************************************VDINADLWFFE****************************AVTVSGPYIVYMLRDEEIIEDWTIIKKA**********
Disordered Region (DISOPRED)
PCILSFVPVGLREQLYRERIVEVESKL******QAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQYNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDIN***************************************SGPYIVYMLRDEEIIEDWTIIK************
Disordered Region (DISEMBL)
PCILSFVPVGLREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQYNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSNQNPLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAM*********
Disordered Region (DISPRO)
PCILSFVPVGLREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQYNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFE**************************RKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMS********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
PCILSFVPVGLREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQYNAEEQATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxADLWFFEHNKRGSNQNPLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMSQRKCDLTY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
Q5PSV4	323	Breast cancer metastasis-	yes	N/A	0.855	0.495	0.520	8e-43
A4FV29	323	Breast cancer metastasis-	yes	N/A	0.855	0.495	0.520	8e-43
Q3U1T3	323	Breast cancer metastasis-	yes	N/A	0.855	0.495	0.520	9e-43
Q5ZLL9	323	Breast cancer metastasis-	yes	N/A	0.844	0.489	0.526	1e-42
Q6AZT4	322	Breast cancer metastasis-	N/A	N/A	0.860	0.5	0.514	1e-42
A4II71	322	Breast cancer metastasis-	yes	N/A	0.850	0.493	0.520	3e-42
Q4V8V1	323	Breast cancer metastasis-	yes	N/A	0.860	0.498	0.5	9e-41
Q1LZE0	246	Breast cancer metastasis-	no	N/A	0.839	0.638	0.437	2e-32
Q9HCU9	246	Breast cancer metastasis-	no	N/A	0.828	0.630	0.438	3e-32
Q5M7T3	246	Breast cancer metastasis-	yes	N/A	0.850	0.646	0.449	3e-32

>sp|Q5PSV4|BRM1L_HUMAN Breast cancer metastasis-suppressor 1-like protein OS=Homo sapiens GN=BRMS1L PE=1 SV=2

 Score =  172 bits (437), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 122/171 (71%), Gaps = 11/171 (6%)

Query: 9   VGLREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQ 68
             L++QLY+ER+ +V++KL EV  G+A EYL PL  LQ+NM+IRT+VA I R+  L +V+
Sbjct: 73  TDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVAGIYRELCLESVK 132

Query: 69  NQYNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSN 128
           N+Y  E QA+RQ+ E+EK LLYD ++ ELEEKIRRLEEDR+S+DI ++LW  E   R   
Sbjct: 133 NKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSELWNDELQSRKKR 192

Query: 129 QNPLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMS 179
           ++P S             ++K V VSGPYIVYML+D +I+EDWT I+KAM+
Sbjct: 193 KDPFSP-----------DKKKPVVVSGPYIVYMLQDLDILEDWTTIRKAMA 232

Involved in the histone deacetylase (HDAC1)-dependent transcriptional repression activity. When overexpressed in lung cancer cell line that lacks p53/TP53 expression, inhibits cell growth.
Homo sapiens (taxid: 9606)

>sp|A4FV29|BRM1L_BOVIN Breast cancer metastasis-suppressor 1-like protein OS=Bos taurus GN=BRMS1L PE=2 SV=1

 Score =  172 bits (437), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 122/171 (71%), Gaps = 11/171 (6%)

Query: 9   VGLREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQ 68
             L++QLY+ER+ +V++KL EV  G+A EYL PL  LQ+NM+IRT+VA I R+  L +V+
Sbjct: 73  TDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVAGIYRELCLESVK 132

Query: 69  NQYNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSN 128
           N+Y  E QA+RQ+ E+EK LLYD ++ ELEEKIRRLEEDR+S+DI ++LW  E   R   
Sbjct: 133 NKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSELWNDELQSRKKR 192

Query: 129 QNPLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMS 179
           ++P S             ++K V VSGPYIVYML+D +I+EDWT I+KAM+
Sbjct: 193 KDPFSP-----------DKKKPVVVSGPYIVYMLQDLDILEDWTTIRKAMA 232

Involved in the histone deacetylase (HDAC1)-dependent transcriptional repression activity. When overexpressed in lung cancer cell line that lacks p53/TP53 expression, inhibits cell growth.

Bos taurus (taxid: 9913)

>sp|Q3U1T3|BRM1L_MOUSE Breast cancer metastasis-suppressor 1-like protein OS=Mus musculus GN=Brms1l PE=2 SV=1

 Score =  172 bits (437), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 122/171 (71%), Gaps = 11/171 (6%)

Query: 9   VGLREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQ 68
             L++QLY+ER+ +V++KL EV  G+A EYL PL  LQ+NM+IRT+VA I R+  L +V+
Sbjct: 73  TDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVAGIYRELCLESVK 132

Query: 69  NQYNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSN 128
           N+Y  E QA+RQ+ E+EK LLYD ++ ELEEKIRRLEEDR+S+DI ++LW  E   R   
Sbjct: 133 NKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSELWNDELQSRKKR 192

Query: 129 QNPLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMS 179
           ++P S             ++K V VSGPYIVYML+D +I+EDWT I+KAM+
Sbjct: 193 KDPFSP-----------DKKKPVVVSGPYIVYMLQDLDILEDWTTIRKAMA 232

Involved in the histone deacetylase (HDAC1)-dependent transcriptional repression activity. When overexpressed in lung cancer cell line that lacks p53/TP53 expression, inhibits cell growth.

Mus musculus (taxid: 10090)

>sp|Q5ZLL9|BRM1L_CHICK Breast cancer metastasis-suppressor 1-like protein OS=Gallus gallus GN=BRMS1L PE=2 SV=1

 Score =  172 bits (435), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 122/169 (72%), Gaps = 11/169 (6%)

Query: 11  LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
           L++QLY+ER+ +V++KL EV  G+A EYL PL  LQ+NM+IRT+VA I R+  L +V+N+
Sbjct: 73  LKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLAALQENMQIRTKVAGIYRELCLESVKNK 132

Query: 71  YNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSNQN 130
           Y  E QA+RQ+ E+EK LLYD ++ ELEEKIRRLEEDR+S+DI ++LW  E   R   ++
Sbjct: 133 YECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSELWNDELQSRKKRKD 192

Query: 131 PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMS 179
           P S             ++K V VSGPYIVYML+D +I+EDWT I+KAM+
Sbjct: 193 PFSP-----------DKKKPVVVSGPYIVYMLQDLDILEDWTTIRKAMA 230

Involved in the histone deacetylase (HDAC1)-dependent transcriptional repression activity.

Gallus gallus (taxid: 9031)

>sp|Q6AZT4|BRM1L_XENLA Breast cancer metastasis-suppressor 1-like protein OS=Xenopus laevis GN=brms1l PE=2 SV=1

 Score =  172 bits (435), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 88/171 (51%), Positives = 124/171 (72%), Gaps = 10/171 (5%)

Query: 9   VGLREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQ 68
             L++QLY+ER+ +V++KL EV+  QA+EYL PL  LQ+NM+IRT+VA I R+  L +V+
Sbjct: 71  TDLKDQLYKERLSQVDAKLQEVKADQAQEYLEPLANLQENMQIRTKVAGIYRELCLESVK 130

Query: 69  NQYNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSN 128
           N+++ E QA RQ+ E+EK LLYD ++ ELEEKIRRLEEDR+S+DI ++LW  E   R   
Sbjct: 131 NKHDCEIQAARQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSELWNDELQSRRKR 190

Query: 129 QNPLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMS 179
           ++P S  +          ++K V VSGPYIVYML+D +I+EDWT I+KAM+
Sbjct: 191 KDPFSPDK----------KKKPVVVSGPYIVYMLQDLDILEDWTTIRKAMA 231

Involved in the histone deacetylase (HDAC1)-dependent transcriptional repression activity.

Xenopus laevis (taxid: 8355)

>sp|A4II71|BRM1L_XENTR Breast cancer metastasis-suppressor 1-like protein OS=Xenopus tropicalis GN=brms1l PE=2 SV=1

 Score =  171 bits (433), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 123/169 (72%), Gaps = 10/169 (5%)

Query: 11  LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
           L++QLY+ER+ +V++KL EV  G+A EYL PL  LQ+NM+IRT+VA I R+  L +V+N+
Sbjct: 73  LKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLANLQENMQIRTKVAGIYRELCLESVKNK 132

Query: 71  YNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSNQN 130
           ++ E QA RQ+ E+EK LLYD ++ ELEEKIRRLEEDR+S+DI ++LW  E   R   ++
Sbjct: 133 HDCEIQAARQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSELWNDELQSRRKRKD 192

Query: 131 PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMS 179
           P S  +          ++K V VSGPYIVYML+D +I+EDWT I+KAM+
Sbjct: 193 PFSPDK----------KKKPVVVSGPYIVYMLQDLDILEDWTTIRKAMA 231

Involved in the histone deacetylase (HDAC1)-dependent transcriptional repression activity.

Xenopus tropicalis (taxid: 8364)

>sp|Q4V8V1|BM1LA_DANRE Breast cancer metastasis-suppressor 1-like protein-A OS=Danio rerio GN=brms1la PE=2 SV=1

 Score =  166 bits (420), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 86/172 (50%), Positives = 124/172 (72%), Gaps = 11/172 (6%)

Query: 9   VGLREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQ 68
             L++QLY+ER+ +V++KL EV  G+A EYL PL  LQ+NM+IRT+VA I R+  L +V+
Sbjct: 71  TDLKDQLYKERLNQVDAKLQEVMSGKAAEYLEPLATLQENMQIRTKVAGIYRELCLESVK 130

Query: 69  NQYNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFE-HNKRGS 127
           N+Y+ E QA  Q+ E+EK LL+D ++ ELEEKIRRLEEDR+S+DI ++LW  E  +++  
Sbjct: 131 NKYDCETQAAFQHWESEKLLLFDTVQTELEEKIRRLEEDRHSIDITSELWNDELQSRKNK 190

Query: 128 NQNPLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMS 179
            ++P S  +          ++K V VSGPYIVYML+D +I+EDWT I+KAM+
Sbjct: 191 KKDPFSPDK----------KKKPVVVSGPYIVYMLQDLDILEDWTAIRKAMA 232

Involved in the histone deacetylase (HDAC1)-dependent transcriptional repression activity.

Danio rerio (taxid: 7955)

>sp|Q1LZE0|BRMS1_BOVIN Breast cancer metastasis-suppressor 1 homolog OS=Bos taurus GN=BRMS1 PE=2 SV=1

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/169 (43%), Positives = 116/169 (68%), Gaps = 12/169 (7%)

Query: 11  LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
           L+E+L+RER+ ++  +L EV   +A EY  PL  LQ +++IR +VA I + + L+ ++N+
Sbjct: 74  LKEKLFRERLSQLRVRLEEVGAERAPEYTEPLGGLQRSLKIRIQVAGIYKGFCLDVIRNK 133

Query: 71  YNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSNQN 130
           Y  E Q  +Q+LE+EK LLYD ++ EL+E+I+RLEEDR S+DI+++ W  + + RGS++ 
Sbjct: 134 YECELQGAKQHLESEKLLLYDTLQGELQERIQRLEEDRQSLDISSEWWDDKLHARGSSRT 193

Query: 131 PLSSKRGPKGFNRMKS--RRKAVTVSGPYIVYMLRDEEIIEDWTIIKKA 177
                     ++ +    R+KA  VSGPYIVYML++ +I+EDWT IKKA
Sbjct: 194 ----------WDSLPPNKRKKAPLVSGPYIVYMLQEIDILEDWTAIKKA 232

Transcriptional repressor. Down-regulates transcription activation by NF-kappa-B by promoting the deacetylation of RELA at 'Lys-310'. Promotes HDAC1 binding to promoter regions. Down-regulates expression of anti-apoptotic genes that are controlled by NF-kappa-B. Promotes apoptosis in cells that have inadequate adherence to a substrate, a process called anoikis, and may thereby inhibit metastasis.

Bos taurus (taxid: 9913)

>sp|Q9HCU9|BRMS1_HUMAN Breast cancer metastasis-suppressor 1 OS=Homo sapiens GN=BRMS1 PE=1 SV=1

 Score =  137 bits (346), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 75/171 (43%), Positives = 116/171 (67%), Gaps = 16/171 (9%)

Query: 11  LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
           L+E+L+RER+ ++  +L EV   +A EY  PL  LQ +++IR +VA I + + L+ ++N+
Sbjct: 74  LKEKLFRERLSQLRLRLEEVGAERAPEYTEPLGGLQRSLKIRIQVAGIYKGFCLDVIRNK 133

Query: 71  YNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSNQN 130
           Y  E Q  +Q+LE+EK LLYD ++ EL+E+I+RLEEDR S+D++++ W  + + RGS+++
Sbjct: 134 YECELQGAKQHLESEKLLLYDTLQGELQERIQRLEEDRQSLDLSSEWWDDKLHARGSSRS 193

Query: 131 ----PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKA 177
               P S             R+KA  VSGPYIVYML++ +I+EDWT IKKA
Sbjct: 194 WDSLPPS------------KRKKAPLVSGPYIVYMLQEIDILEDWTAIKKA 232

Transcriptional repressor. Down-regulates transcription activation by NF-kappa-B by promoting the deacetylation of RELA at 'Lys-310'. Promotes HDAC1 binding to promoter regions. Down-regulates expression of anti-apoptotic genes that are controlled by NF-kappa-B. Promotes apoptosis in cells that have inadequate adherence to a substrate, a process called anoikis, and may thereby inhibit metastasis. May be a mediator of metastasis suppression in breast carcinoma.

Homo sapiens (taxid: 9606)

>sp|Q5M7T3|BRMS1_RAT Breast cancer metastasis-suppressor 1 homolog OS=Rattus norvegicus GN=Brms1 PE=2 SV=1

 Score =  137 bits (346), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 113/167 (67%), Gaps = 8/167 (4%)

Query: 11  LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
           L+E+L+RER+ ++  +L EV   +A EY  PL  LQ +++IR +VA I + + L+ ++N+
Sbjct: 74  LKEKLFRERLSQLRLRLEEVGAERAPEYTEPLGGLQQSLKIRIQVAGIYKGFCLDVIRNK 133

Query: 71  YNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSNQN 130
           Y  E Q  +Q+LE+EK LLYD +  EL+E+I+RLEEDR S+DI+++ W  + + RGS++ 
Sbjct: 134 YECELQGAKQHLESEKLLLYDTLLGELQERIQRLEEDRQSLDISSEWWDDKLHSRGSSKT 193

Query: 131 PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKA 177
             S             R+KA  VSGPYIVYML++ +I+EDWT IKKA
Sbjct: 194 WDSVP--------PSKRKKAPLVSGPYIVYMLQEIDILEDWTAIKKA 232

Transcriptional repressor. Down-regulates transcription activation by NF-kappa-B by promoting the deacetylation of RELA at 'Lys-310'. Promotes HDAC1 binding to promoter regions. Down-regulates expression of anti-apoptotic genes that are controlled by NF-kappa-B. Promotes apoptosis in cells that have inadequate adherence to a substrate, a process called anoikis, and may thereby inhibit metastasis.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
328776504	237	PREDICTED: breast cancer metastasis-supp	0.855	0.675	0.525	8e-44
328776506	230	PREDICTED: breast cancer metastasis-supp	0.855	0.695	0.525	1e-43
340723626	230	PREDICTED: breast cancer metastasis-supp	0.855	0.695	0.525	1e-43
383859651	237	PREDICTED: breast cancer metastasis-supp	0.855	0.675	0.52	1e-43
322799624	230	hypothetical protein SINV_06396 [Solenop	0.855	0.695	0.52	3e-43
307208997	216	Breast cancer metastasis-suppressor 1-li	0.855	0.740	0.514	3e-43
307169525	505	Dehydrogenase/reductase SDR family membe	0.866	0.320	0.508	4e-43
427783631	318	Putative breast cancer metastasis-suppre	0.844	0.496	0.552	4e-43
242012517	234	Breast cancer metastasis-suppressor, put	0.844	0.675	0.531	1e-42
332022280	230	Breast cancer metastasis-suppressor 1-li	0.855	0.695	0.514	2e-42

>gi|328776504|ref|XP_003249169.1| PREDICTED: breast cancer metastasis-suppressor 1-like protein-A-like isoform 1 [Apis mellifera] gi|380022464|ref|XP_003695065.1| PREDICTED: breast cancer metastasis-suppressor 1-like protein-A-like isoform 2 [Apis florea]

 Score =  181 bits (460), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 92/175 (52%), Positives = 131/175 (74%), Gaps = 15/175 (8%)

Query: 11  LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
           L+EQLYRERI +V++KL EV +G+++EYL+PL++L++NM+ +TEVA IL+QY+L N+QN+
Sbjct: 77  LKEQLYRERITQVDTKLGEVRVGKSEEYLIPLERLKENMKTKTEVAGILKQYRLQNIQNK 136

Query: 71  YNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSNQN 130
           + AEEQA  QN E+EK L++D +  +L+EKIRRLEEDRN+VDI+ADLW    N  G  + 
Sbjct: 137 FLAEEQAALQNFESEKELIWDCIHNDLQEKIRRLEEDRNNVDIHADLWL---NSNGRRRR 193

Query: 131 PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMSQRKCDL 185
                           RR+AV+V+GPYIVYML D +I+EDW +IKK++S RK ++
Sbjct: 194 N------------HTERRRAVSVAGPYIVYMLNDADILEDWALIKKSLSSRKTEI 236

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776506|ref|XP_625063.2| PREDICTED: breast cancer metastasis-suppressor 1-like protein-A-like isoform 2 [Apis mellifera] gi|380022462|ref|XP_003695064.1| PREDICTED: breast cancer metastasis-suppressor 1-like protein-A-like isoform 1 [Apis florea]

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/175 (52%), Positives = 131/175 (74%), Gaps = 15/175 (8%)

Query: 11  LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
           L+EQLYRERI +V++KL EV +G+++EYL+PL++L++NM+ +TEVA IL+QY+L N+QN+
Sbjct: 70  LKEQLYRERITQVDTKLGEVRVGKSEEYLIPLERLKENMKTKTEVAGILKQYRLQNIQNK 129

Query: 71  YNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSNQN 130
           + AEEQA  QN E+EK L++D +  +L+EKIRRLEEDRN+VDI+ADLW    N  G  + 
Sbjct: 130 FLAEEQAALQNFESEKELIWDCIHNDLQEKIRRLEEDRNNVDIHADLWL---NSNGRRR- 185

Query: 131 PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMSQRKCDL 185
                           RR+AV+V+GPYIVYML D +I+EDW +IKK++S RK ++
Sbjct: 186 -----------RNHTERRRAVSVAGPYIVYMLNDADILEDWALIKKSLSSRKTEI 229

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723626|ref|XP_003400190.1| PREDICTED: breast cancer metastasis-suppressor 1-like protein-A-like isoform 1 [Bombus terrestris] gi|340723628|ref|XP_003400191.1| PREDICTED: breast cancer metastasis-suppressor 1-like protein-A-like isoform 2 [Bombus terrestris] gi|350422707|ref|XP_003493256.1| PREDICTED: breast cancer metastasis-suppressor 1-like protein-A-like [Bombus impatiens]

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/175 (52%), Positives = 131/175 (74%), Gaps = 15/175 (8%)

Query: 11  LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
           L+EQLYRERI +V++KL EV +G+++EYL+PL++L++NM+ +TEVA IL+QY+L N+QN+
Sbjct: 70  LKEQLYRERITQVDTKLGEVRVGKSEEYLVPLERLKENMKTKTEVAGILKQYRLQNIQNK 129

Query: 71  YNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSNQN 130
           + AEEQA  QN E+EK L++D +  +L+EKIRRLEEDRN+VDI+ADLW    N  G  + 
Sbjct: 130 FLAEEQAALQNFESEKELIWDCIHNDLQEKIRRLEEDRNNVDIHADLWL---NSNGRRR- 185

Query: 131 PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMSQRKCDL 185
                           RR+AV+V+GPYIVYML D +I+EDW +IKK++S RK ++
Sbjct: 186 -----------RNHTERRRAVSVAGPYIVYMLNDADILEDWALIKKSLSSRKTEI 229

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859651|ref|XP_003705306.1| PREDICTED: breast cancer metastasis-suppressor 1-like protein-A-like [Megachile rotundata]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 130/175 (74%), Gaps = 15/175 (8%)

Query: 11  LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
           L+EQLYRERI +V++KL EV +G+++EYL+PL++L++NM+ +TEVA IL+QY+L N+QN+
Sbjct: 77  LKEQLYRERITQVDTKLGEVRVGKSEEYLIPLERLKENMKTKTEVAGILKQYRLQNIQNK 136

Query: 71  YNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSNQN 130
           + AEEQA  QN E+EK L++D +  +L+EKIRRLEEDRN+VDI+ADLW    N  G  + 
Sbjct: 137 FLAEEQAALQNFESEKELIWDCIHSDLQEKIRRLEEDRNNVDIHADLWL---NSNGRRRR 193

Query: 131 PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMSQRKCDL 185
                           RR+AV+V+GPYIVYML D +I+EDW +IKK++  RK ++
Sbjct: 194 N------------HTERRRAVSVAGPYIVYMLNDADILEDWALIKKSLGSRKTEI 236

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799624|gb|EFZ20896.1| hypothetical protein SINV_06396 [Solenopsis invicta]

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 130/175 (74%), Gaps = 15/175 (8%)

Query: 11  LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
           L+EQLYRERI +V++KL EV +G+++EYL+PL++L++NM+ +TEVA ILRQY+L N++N+
Sbjct: 70  LKEQLYRERITQVDTKLGEVRVGKSEEYLIPLERLKENMKTKTEVAGILRQYRLQNIENK 129

Query: 71  YNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSNQN 130
           + AEE A  QNLE+EK L++D +  +L+EKIRRLEEDRN+VDI+ADLW    N  G  + 
Sbjct: 130 FKAEELAAYQNLESEKGLVWDCIHNDLQEKIRRLEEDRNNVDIHADLWL---NSTGRRRR 186

Query: 131 PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMSQRKCDL 185
                           RR+AV+V+GPYIVYML D +I+EDW +IKK++  RK ++
Sbjct: 187 N------------HSERRRAVSVAGPYIVYMLNDADILEDWALIKKSLGSRKAEI 229

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208997|gb|EFN86197.1| Breast cancer metastasis-suppressor 1-like protein [Harpegnathos saltator]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 90/175 (51%), Positives = 134/175 (76%), Gaps = 15/175 (8%)

Query: 11  LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
           L+EQLYRERI +V++KL EV +G+++EYL+PL++L++N++ +TEVA IL+Q++LNN+ N+
Sbjct: 56  LKEQLYRERITQVDTKLGEVRVGKSEEYLIPLERLKENLKTKTEVAGILKQFRLNNILNK 115

Query: 71  YNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSNQN 130
           + AEEQA  QN E+EKS+++D + +EL++KIRRLEED+N+VDI+ADLW           N
Sbjct: 116 FYAEEQAALQNFESEKSIVWDGIHDELQDKIRRLEEDKNNVDIHADLWL----------N 165

Query: 131 PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMSQRKCDL 185
             S +R          RR+AV+V+GPYIVYML D +I+EDW +IKK++S RK ++
Sbjct: 166 TTSRRRRNH-----TERRRAVSVAGPYIVYMLNDTDILEDWAMIKKSLSSRKTEI 215

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169525|gb|EFN62167.1| Dehydrogenase/reductase SDR family member 7 [Camponotus floridanus]

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 90/177 (50%), Positives = 130/177 (73%), Gaps = 15/177 (8%)

Query: 11  LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
           L+EQLYRERI +V++KL EV +G+++EYL+PL++L++NM+ +TEVA IL+QY+L N+QN+
Sbjct: 70  LKEQLYRERITQVDTKLGEVRVGKSEEYLIPLERLKENMKTKTEVAGILKQYRLQNIQNK 129

Query: 71  YNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSNQN 130
           + AEEQA  QN E+EK L++D +  +L+EKIRRLEEDRN+VDI+ADLW    N  G  + 
Sbjct: 130 FLAEEQAALQNFESEKGLIWDCIHNDLQEKIRRLEEDRNNVDIHADLWL---NTTGRRR- 185

Query: 131 PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMSQRKCDLTY 187
                           RR+AV+V+GPYIVYML D +I+EDW +IKK+++  K  + +
Sbjct: 186 -----------RNHSERRRAVSVAGPYIVYMLNDADILEDWALIKKSLTSLKGKVVW 231

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427783631|gb|JAA57267.1| Putative breast cancer metastasis-suppressor 1-like a [Rhipicephalus pulchellus]

 Score =  179 bits (454), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 122/170 (71%), Gaps = 12/170 (7%)

Query: 11  LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
           L+EQLY ER  ++E+KL EV+LG+A EYL PL+ LQDNMRIR EVA IL++ KL N++ +
Sbjct: 151 LKEQLYLERANQIEAKLEEVKLGRAPEYLQPLEDLQDNMRIRIEVAGILKEMKLKNIKRK 210

Query: 71  YNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWF--FEHNKRGSN 128
             AEE A  QN E+E++LL D ++ ELEEKIRRLEEDRNS+DI +DLW     H K    
Sbjct: 211 CEAEETAALQNFESERALLQDSIRCELEEKIRRLEEDRNSIDITSDLWSEQVTHKKSRRK 270

Query: 129 QNPLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAM 178
            + +++ R          R+K VTVSGPYIVYMLR+ EI+EDWT I+KA+
Sbjct: 271 TDSMTTDR----------RKKPVTVSGPYIVYMLRENEILEDWTAIRKAL 310

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012517|ref|XP_002426979.1| Breast cancer metastasis-suppressor, putative [Pediculus humanus corporis] gi|212511208|gb|EEB14241.1| Breast cancer metastasis-suppressor, putative [Pediculus humanus corporis]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/177 (53%), Positives = 129/177 (72%), Gaps = 19/177 (10%)

Query: 11  LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
           LREQLYRER  +V+SKL E+  G+A+EYL PLQ+LQ+NMRIRTEVAAIL+Q+ L +V NQ
Sbjct: 74  LREQLYRERFTQVDSKLLEIRSGRAQEYLQPLQQLQENMRIRTEVAAILKQFSLASVNNQ 133

Query: 71  YNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSNQN 130
            +AE  A  QNL++E+ LL+D +++ LE +IRRLEEDRN++D+N+ LW  E  +R S   
Sbjct: 134 IDAEAIAAVQNLQSEQKLLWDTIQDGLEGEIRRLEEDRNNIDVNSALWGSEQPRRTSG-- 191

Query: 131 PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMS--QRKCDL 185
                          SRRK V+V+GPYI+YML + +I+EDWTIIK+A++  +RK +L
Sbjct: 192 ---------------SRRKPVSVNGPYIIYMLHESDILEDWTIIKRALTVCKRKSEL 233

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022280|gb|EGI62593.1| Breast cancer metastasis-suppressor 1-like protein [Acromyrmex echinatior]

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/175 (51%), Positives = 129/175 (73%), Gaps = 15/175 (8%)

Query: 11  LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
           L+EQLYRERI +V++KL EV +G+++EYL+PL++L++NM+ +TEVA IL+QY+L N+QN+
Sbjct: 70  LKEQLYRERITQVDTKLGEVRVGKSEEYLIPLERLKENMKTKTEVAGILKQYRLQNIQNK 129

Query: 71  YNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSNQN 130
           + AEE A  QN E+EK L++D +  +L+EKIRRLEEDRN+VDI+ADLW    N  G  + 
Sbjct: 130 FLAEELAAFQNFESEKGLVWDCIHNDLQEKIRRLEEDRNNVDIHADLWL---NTTGRRR- 185

Query: 131 PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMSQRKCDL 185
                           RR+AV+V+GPYIVYML D +I+EDW +IKK++  RK ++
Sbjct: 186 -----------RNHSERRRAVSVAGPYIVYMLNDADILEDWALIKKSLGSRKAEI 229

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
UNIPROTKB|Q5ZLL9	323	BRMS1L "Breast cancer metastas	0.844	0.489	0.467	2e-33
UNIPROTKB|A4FV29	323	BRMS1L "Breast cancer metastas	0.844	0.489	0.467	2e-33
UNIPROTKB|Q5PSV4	323	BRMS1L "Breast cancer metastas	0.844	0.489	0.467	2e-33
MGI|MGI:1196337	323	Brms1l "breast cancer metastas	0.844	0.489	0.467	2e-33
ZFIN|ZDB-GENE-050913-49	323	brms1la "breast cancer metasta	0.855	0.495	0.461	2.9e-32
FB|FBgn0030434	259	CG4400 [Drosophila melanogaste	0.855	0.617	0.418	5.6e-29
UNIPROTKB|F1RUT0	246	BRMS1 "Uncharacterized protein	0.850	0.646	0.413	3.2e-26
RGD|1311057	246	Brms1 "breast cancer metastasi	0.850	0.646	0.407	3.2e-26
MGI|MGI:2388804	246	Brms1 "breast cancer metastasi	0.850	0.646	0.407	4e-26
UNIPROTKB|Q1LZE0	246	BRMS1 "Breast cancer metastasi	0.850	0.646	0.413	5.2e-26

UNIPROTKB|Q5ZLL9 BRMS1L "Breast cancer metastasis-suppressor 1-like protein" [Gallus gallus (taxid:9031)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 79/169 (46%), Positives = 111/169 (65%)

Query:    11 LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
             L++QLY+ER+ +V++KL EV  G+A EYL PL  LQ+NM+IRT+VA I R+  L +V+N+
Sbjct:    73 LKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLAALQENMQIRTKVAGIYRELCLESVKNK 132

Query:    71 YNAEEQATRQNLENEKSLLYDHMXXXXXXXXXXXXXDRNSVDINADLWFFEHNKRGSNQN 130
             Y  E QA+RQ+ E+EK LLYD +             DR+S+DI ++LW  E   R   ++
Sbjct:   133 YECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSELWNDELQSRKKRKD 192

Query:   131 PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMS 179
             P S    P        ++K V VSGPYIVYML+D +I+EDWT I+KAM+
Sbjct:   193 PFS----P-------DKKKPVVVSGPYIVYMLQDLDILEDWTTIRKAMA 230

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|A4FV29 BRMS1L "Breast cancer metastasis-suppressor 1-like protein" [Bos taurus (taxid:9913)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 79/169 (46%), Positives = 111/169 (65%)

Query:    11 LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
             L++QLY+ER+ +V++KL EV  G+A EYL PL  LQ+NM+IRT+VA I R+  L +V+N+
Sbjct:    75 LKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVAGIYRELCLESVKNK 134

Query:    71 YNAEEQATRQNLENEKSLLYDHMXXXXXXXXXXXXXDRNSVDINADLWFFEHNKRGSNQN 130
             Y  E QA+RQ+ E+EK LLYD +             DR+S+DI ++LW  E   R   ++
Sbjct:   135 YECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSELWNDELQSRKKRKD 194

Query:   131 PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMS 179
             P S    P        ++K V VSGPYIVYML+D +I+EDWT I+KAM+
Sbjct:   195 PFS----P-------DKKKPVVVSGPYIVYMLQDLDILEDWTTIRKAMA 232

GO:0005634 "nucleus" evidence=IEA

GO:0040008 "regulation of growth" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q5PSV4 BRMS1L "Breast cancer metastasis-suppressor 1-like protein" [Homo sapiens (taxid:9606)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 79/169 (46%), Positives = 111/169 (65%)

Query:    11 LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
             L++QLY+ER+ +V++KL EV  G+A EYL PL  LQ+NM+IRT+VA I R+  L +V+N+
Sbjct:    75 LKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVAGIYRELCLESVKNK 134

Query:    71 YNAEEQATRQNLENEKSLLYDHMXXXXXXXXXXXXXDRNSVDINADLWFFEHNKRGSNQN 130
             Y  E QA+RQ+ E+EK LLYD +             DR+S+DI ++LW  E   R   ++
Sbjct:   135 YECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSELWNDELQSRKKRKD 194

Query:   131 PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMS 179
             P S    P        ++K V VSGPYIVYML+D +I+EDWT I+KAM+
Sbjct:   195 PFS----P-------DKKKPVVVSGPYIVYMLQDLDILEDWTTIRKAMA 232

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0040008 "regulation of growth" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1196337 Brms1l "breast cancer metastasis-suppressor 1-like" [Mus musculus (taxid:10090)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 79/169 (46%), Positives = 111/169 (65%)

Query:    11 LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
             L++QLY+ER+ +V++KL EV  G+A EYL PL  LQ+NM+IRT+VA I R+  L +V+N+
Sbjct:    75 LKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVAGIYRELCLESVKNK 134

Query:    71 YNAEEQATRQNLENEKSLLYDHMXXXXXXXXXXXXXDRNSVDINADLWFFEHNKRGSNQN 130
             Y  E QA+RQ+ E+EK LLYD +             DR+S+DI ++LW  E   R   ++
Sbjct:   135 YECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSELWNDELQSRKKRKD 194

Query:   131 PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMS 179
             P S    P        ++K V VSGPYIVYML+D +I+EDWT I+KAM+
Sbjct:   195 PFS----P-------DKKKPVVVSGPYIVYMLQDLDILEDWTTIRKAMA 232

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0040008 "regulation of growth" evidence=IEA

ZFIN|ZDB-GENE-050913-49 brms1la "breast cancer metastasis-suppressor 1-like a" [Danio rerio (taxid:7955)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 78/169 (46%), Positives = 115/169 (68%)

Query:    11 LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
             L++QLY+ER+ +V++KL EV  G+A EYL PL  LQ+NM+IRT+VA I R+  L +V+N+
Sbjct:    73 LKDQLYKERLNQVDAKLQEVMSGKAAEYLEPLATLQENMQIRTKVAGIYRELCLESVKNK 132

Query:    71 YNAEEQATRQNLENEKSLLYDHMXXXXXXXXXXXXXDRNSVDINADLWFFEHNKRGSNQN 130
             Y+ E QA  Q+ E+EK LL+D +             DR+S+DI ++LW   +++  S +N
Sbjct:   133 YDCETQAAFQHWESEKLLLFDTVQTELEEKIRRLEEDRHSIDITSELW---NDELQSRKN 189

Query:   131 PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMS 179
                 K+ P  F+  K ++K V VSGPYIVYML+D +I+EDWT I+KAM+
Sbjct:   190 ---KKKDP--FSPDK-KKKPVVVSGPYIVYMLQDLDILEDWTAIRKAMA 232

GO:0003674 "molecular_function" evidence=ND

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

FB|FBgn0030434 CG4400 [Drosophila melanogaster (taxid:7227)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 74/177 (41%), Positives = 111/177 (62%)

Query:    11 LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
             LREQ Y ERI  +E +L EV  G+++E++ P ++L    R R EVA +LR+Y+L N++++
Sbjct:    73 LREQYYVERINLIERQLAEVRSGRSEEFVQPQKELDKKYRTRIEVADVLRKYRLQNIEHK 132

Query:    71 YNAEEQATRQNLENEKSLLYDHMXXXXXXXXXXXXXDRNSVDIN-ADLWFFEHNKRGSNQ 129
             Y +EEQA  Q+ E+EK +  D++             DR++VDI+ AD W       G+++
Sbjct:   133 YQSEEQAAVQHFESEKHMALDNLREEFMERIRRLEEDRHNVDISWAD-W-------GTDK 184

Query:   130 NPLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKAMSQRKCDLT 186
                S  RGP        R+KAVTV+GPY+VYMLR+E+I+EDWTII+KA+ +     T
Sbjct:   185 RQ-SKVRGP-------GRKKAVTVTGPYVVYMLREEDIMEDWTIIRKALKRSSSSAT 233

GO:0070822 "Sin3-type complex" evidence=IDA

UNIPROTKB|F1RUT0 BRMS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 69/167 (41%), Positives = 103/167 (61%)

Query:    11 LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
             L+E+L+RER+ ++  +L EV   +A EY  PL  LQ +++IR +VA I + + L+ ++N+
Sbjct:    74 LKEKLFRERLSQLRVRLEEVGAERAPEYTEPLGGLQRSLKIRIQVAGIYKGFCLDVIRNK 133

Query:    71 YNAEEQATRQNLENEKSLLYDHMXXXXXXXXXXXXXDRNSVDINADLWFFEHNKRGSNQN 130
             Y  E Q  RQ+LE+EK LLYD +             DR S+DI+++ W  + + RGS++ 
Sbjct:   134 YECELQGARQHLESEKLLLYDTLQGELQERIQRLEEDRQSLDISSEWWDDKLHARGSSKT 193

Query:   131 PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKA 177
               S    P        R+KA  VSGPYIVYML++ +I+EDWT IKKA
Sbjct:   194 WDSLP--PS------KRKKAPLVSGPYIVYMLQEIDILEDWTAIKKA 232

GO:0009987 "cellular process" evidence=IEA

RGD|1311057 Brms1 "breast cancer metastasis-suppressor 1" [Rattus norvegicus (taxid:10116)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 68/167 (40%), Positives = 103/167 (61%)

Query:    11 LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
             L+E+L+RER+ ++  +L EV   +A EY  PL  LQ +++IR +VA I + + L+ ++N+
Sbjct:    74 LKEKLFRERLSQLRLRLEEVGAERAPEYTEPLGGLQQSLKIRIQVAGIYKGFCLDVIRNK 133

Query:    71 YNAEEQATRQNLENEKSLLYDHMXXXXXXXXXXXXXDRNSVDINADLWFFEHNKRGSNQN 130
             Y  E Q  +Q+LE+EK LLYD +             DR S+DI+++ W  + + RGS++ 
Sbjct:   134 YECELQGAKQHLESEKLLLYDTLLGELQERIQRLEEDRQSLDISSEWWDDKLHSRGSSKT 193

Query:   131 PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKA 177
               S    P        R+KA  VSGPYIVYML++ +I+EDWT IKKA
Sbjct:   194 WDSVP--PS------KRKKAPLVSGPYIVYMLQEIDILEDWTAIKKA 232

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0009987 "cellular process" evidence=ISO

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISO;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO;ISS

GO:0051059 "NF-kappaB binding" evidence=ISO

GO:0090312 "positive regulation of protein deacetylation" evidence=ISO;ISS

GO:2000210 "positive regulation of anoikis" evidence=ISO;ISS

MGI|MGI:2388804 Brms1 "breast cancer metastasis-suppressor 1" [Mus musculus (taxid:10090)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 68/167 (40%), Positives = 101/167 (60%)

Query:    11 LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
             L+E+L+RER+ ++  +L EV   +A EY  PL  LQ +++IR +VA I + + L+ ++N+
Sbjct:    74 LKEKLFRERLSQLRLRLEEVGAERAPEYTEPLGGLQQSLKIRIQVAGIYKGFCLDVIRNK 133

Query:    71 YNAEEQATRQNLENEKSLLYDHMXXXXXXXXXXXXXDRNSVDINADLWFFEHNKRGSNQN 130
             Y  E Q  +Q+LE+EK LLYD +             DR S+DI+++ W  + + R S   
Sbjct:   134 YECELQGAKQHLESEKMLLYDTLLGELQERIQRLEEDRQSLDISSEWWDDKLHSRSS--- 190

Query:   131 PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKA 177
                SK G         R+KA  VSGPYIVYML++ +I+EDWT IKKA
Sbjct:   191 ---SKAGDA--MPPSKRKKAPLVSGPYIVYMLQEIDILEDWTAIKKA 232

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0009987 "cellular process" evidence=IDA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0051059 "NF-kappaB binding" evidence=ISO

GO:0090312 "positive regulation of protein deacetylation" evidence=ISO

GO:2000210 "positive regulation of anoikis" evidence=ISO

UNIPROTKB|Q1LZE0 BRMS1 "Breast cancer metastasis-suppressor 1 homolog" [Bos taurus (taxid:9913)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 69/167 (41%), Positives = 105/167 (62%)

Query:    11 LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
             L+E+L+RER+ ++  +L EV   +A EY  PL  LQ +++IR +VA I + + L+ ++N+
Sbjct:    74 LKEKLFRERLSQLRVRLEEVGAERAPEYTEPLGGLQRSLKIRIQVAGIYKGFCLDVIRNK 133

Query:    71 YNAEEQATRQNLENEKSLLYDHMXXXXXXXXXXXXXDRNSVDINADLWFFEHNKRGSNQN 130
             Y  E Q  +Q+LE+EK LLYD +             DR S+DI+++ W  + + RGS++ 
Sbjct:   134 YECELQGAKQHLESEKLLLYDTLQGELQERIQRLEEDRQSLDISSEWWDDKLHARGSSRT 193

Query:   131 PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYMLRDEEIIEDWTIIKKA 177
               S    P   N+   R+KA  VSGPYIVYML++ +I+EDWT IKKA
Sbjct:   194 WDSLP--P---NK---RKKAPLVSGPYIVYMLQEIDILEDWTAIKKA 232

GO:2000210 "positive regulation of anoikis" evidence=ISS

GO:0090312 "positive regulation of protein deacetylation" evidence=ISS

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A4II71	BRM1L_XENTR	No assigned EC number	0.5207	0.8502	0.4937	yes	N/A
Q5PSV4	BRM1L_HUMAN	No assigned EC number	0.5204	0.8556	0.4953	yes	N/A
Q5M7T3	BRMS1_RAT	No assigned EC number	0.4491	0.8502	0.6463	yes	N/A
Q5ZLL9	BRM1L_CHICK	No assigned EC number	0.5266	0.8449	0.4891	yes	N/A
A4FV29	BRM1L_BOVIN	No assigned EC number	0.5204	0.8556	0.4953	yes	N/A
Q3U1T3	BRM1L_MOUSE	No assigned EC number	0.5204	0.8556	0.4953	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	187
pfam08598	184	pfam08598, Sds3, Sds3-like	1e-31

>gnl|CDD|219925 pfam08598, Sds3, Sds3-like

 Score =  112 bits (282), Expect = 1e-31
 Identities = 70/172 (40%), Positives = 101/172 (58%), Gaps = 12/172 (6%)

Query: 11  LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
           LR+QLYRER+ +++++L  +  G   EYL PL+ L++    R +VA + R+YKL  ++ +
Sbjct: 17  LRDQLYRERLAQLQTELELLLQGTHPEYLEPLKDLEERRDDRLKVAELRREYKLECIERE 76

Query: 71  YNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSNQN 130
           Y AE QA +Q  E EK LL + + EELEEKI RLEE+R S+DI    +       GS+ N
Sbjct: 77  YEAERQAAKQEFEKEKRLLRERLLEELEEKIYRLEEERRSLDITDSDYGLL----GSHPN 132

Query: 131 PLSSK--RGPKGFNRMKSRRKAVTVSG------PYIVYMLRDEEIIEDWTII 174
             + K  R       +  R+K    S       PYI+YML++EEI+ED T I
Sbjct: 133 RRTRKLRRRVNSPELVAKRKKKNNESSDLSGLAPYILYMLKEEEILEDLTAI 184

Repression of gene transcription is mediated by histone deacetylases containing repressor-co-repressor complexes, which are recruited to promoters of target genes via interactions with sequence-specific transcription factors. The co-repressor complex contains a core of at least seven proteins. This family represents the conserved region found in Sds3, Dep1 and BRMS1-homologue p40 proteins. Length = 184

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
KOG4466|consensus	291		100.0
PF08598	205	Sds3: Sds3-like; InterPro: IPR013907 Repression of	100.0

>KOG4466|consensus

Probab=100.00  E-value=8.5e-49  Score=337.69  Aligned_cols=167  Identities=32%  Similarity=0.519  Sum_probs=155.8

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy15420          4 LSFVPVGLREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQYNAEEQATRQNLE   83 (187)
Q Consensus         4 ~~~~F~~lKEqlY~ErL~~L~~qL~el~~GthpEYl~~l~~LEe~~~~Rl~~a~i~rey~l~~i~~ey~~E~~aA~~e~e   83 (187)
                      ++..|+++||++|++||++|+++|++|++|+||||++++++|++++++|+++|+||++|++++|+++|++|++||++|||
T Consensus        28 l~~~f~elkeq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~kerl~~aely~e~~~e~v~~eYe~E~~aAk~e~E  107 (291)
T KOG4466|consen   28 LEKQFSELKEQMYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKERLRVAELYREYCVERVEREYECEIKAAKKEYE  107 (291)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcccccccc-ccccccccccCCCCCCCCCCCCCCCCCCccccCCCccCCc-ccccc
Q psy15420         84 NEKSLLYDHMKEELEEKIRRLEEDRNSVDINAD-LWFFEHNKRGSNQNPLSSKRGPKGFNRMKSRRKAVTVSGP-YIVYM  161 (187)
Q Consensus        84 ~~k~~lke~l~~eLeek~rrLeeeR~~~dl~~~-~w~d~~~~rk~rRr~~~~~p~~~~~~~p~krrKp~~vsgp-~ivy~  161 (187)
                      +++.+|+|+++++|++|||+|+|||++||||++ +|++...+|++||+|++|.          +.++++.+||| +||||
T Consensus       108 ~~~~lLke~l~seleeKkrkieeeR~smDlts~~~e~~~l~~rk~rrd~~~p~----------k~r~~r~~sa~~~~~y~  177 (291)
T KOG4466|consen  108 SKKKLLKENLISELEEKKRKIEEERLSMDLTSDSMESKPLYTRKLRRDPNDPE----------KGRDKRNKSAPDQLVYQ  177 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchHHhhhcccCCCCcc----------cccccccCCChHHHHHh
Confidence            999999999999999999999999999999987 5777789999999999854          44444456778 99999


Q ss_pred             CChhhHHHHHHHHHHHHhc
Q psy15420        162 LRDEEIIEDWTIIKKAMSQ  180 (187)
Q Consensus       162 L~e~eI~eDl~~I~ka~~~  180 (187)
                      |++.+|++||++|+++.+.
T Consensus       178 L~d~~i~eD~~~i~k~~s~  196 (291)
T KOG4466|consen  178 LQDLNILEDLRTINKDESA  196 (291)
T ss_pred             hhhhhHHHHHhhhccccCC
Confidence            9999999999999988654

>PF08598 Sds3: Sds3-like; InterPro: IPR013907 Repression of gene transcription is mediated by histone deacetylases containing repressor-co-repressor complexes, which are recruited to promoters of target genes via interactions with sequence-specific transcription factors

Probab=100.00  E-value=2.9e-39  Score=266.95  Aligned_cols=165  Identities=42%  Similarity=0.647  Sum_probs=26.1

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy15420          4 LSFVPVGLREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQYNAEEQATRQNLE   83 (187)
Q Consensus         4 ~~~~F~~lKEqlY~ErL~~L~~qL~el~~GthpEYl~~l~~LEe~~~~Rl~~a~i~rey~l~~i~~ey~~E~~aA~~e~e   83 (187)
                      +|.+|+++||++|+|+|++|+.+|++|++||||||+.++++|++++|.+|.++++|++|++++++++|++|.++|+++|+
T Consensus        10 le~~F~~~Rd~lY~e~l~~L~~el~~l~~~t~pe~l~~l~~l~~~rd~~l~~a~~~~~~~l~~i~~~~~~e~~~a~~e~~   89 (205)
T PF08598_consen   10 LEKQFAELRDQLYRERLAQLQQELEQLQEGTHPEYLRRLQDLEERRDERLRVAEILREYRLESIEREYEAERQQAEQEYE   89 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCHHHH-----------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccc-------------------cccccCCCCCCCCCCCCCCCCCC
Q psy15420         84 NEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFE-------------------HNKRGSNQNPLSSKRGPKGFNRM  144 (187)
Q Consensus        84 ~~k~~lke~l~~eLeek~rrLeeeR~~~dl~~~~w~d~-------------------~~~rk~rRr~~~~~p~~~~~~~p  144 (187)
                      +++..|+++|+++|++++++|++||.+||+++++|+..                   ..+|++|++.+.+.+.      +
T Consensus        90 ~~~~~lre~l~~~l~ek~~~L~~er~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~r~r~~~~~~~------~  163 (205)
T PF08598_consen   90 SEKRELRERLLEELEEKRRRLEEERENMDISSPSWSLLHPSQFSLTNPASPGGSHSKRATRKLRRRENSPNQI------A  163 (205)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhhccchhhhhhhhhhhhccccchhhhhccccccccch------h
Confidence            99999999999999999999999999999998889877                   4577778877765442      3


Q ss_pred             ccccCCCcc---CC--ccc-------cccCChhhHHHHHHHH
Q psy15420        145 KSRRKAVTV---SG--PYI-------VYMLRDEEIIEDWTII  174 (187)
Q Consensus       145 ~krrKp~~v---sg--p~i-------vy~L~e~eI~eDl~~I  174 (187)
                      .++|++.++   +|  |++       ||+|++.||++||++|
T Consensus       164 ~~kr~~~~~~~l~~~~~~~~~pa~~~~~~l~~~eI~eDl~~i  205 (205)
T PF08598_consen  164 QRKRKNKEVSDLSGPAPYIGFPAAPNVYMLREEEIEEDLEAI  205 (205)
T ss_dssp             ------------------------------------------
T ss_pred             ccccCCCCCCcccccCCcccchhhhhccCCCHHHHHHHHHcC
Confidence            444444333   33  999       9999999999999987

The co-repressor complex contains a core of at least seven proteins []. This entry represents the conserved region found in Sds3, Dep1 and BRMS1-homologue p40 proteins. ; PDB: 2XUS_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	187
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 7e-04
 Identities = 39/224 (17%), Positives = 76/224 (33%), Gaps = 71/224 (31%)

Query: 12  REQLYRERIVEVESKLNEVELGQAKEYL-LPLQKLQDNMRIRTE----------VAAILR 60
           R++LY +   +V +K N V   Q    L   L +L+    +  +             +  
Sbjct: 116 RDRLYND--NQVFAKYN-VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 61  QYKLNNVQNQYN--------AEEQATRQNLENEKSLLY----------DHMK------EE 96
            YK   VQ + +            +    LE  + LLY          DH          
Sbjct: 173 SYK---VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 97  LEEKIRRLEEDR---NSVDINADLWFFEHNKRGSNQNPLSSKRGPKGFN---R--MKSRR 148
           ++ ++RRL + +   N + +  ++                + +    FN   +  + +R 
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQ---------------NAKAWNAFNLSCKILLTTRF 274

Query: 149 KAVT--VSGPYIVYMLRDEEII-----EDWTIIKKAMSQRKCDL 185
           K VT  +S     ++  D   +     E  +++ K +  R  DL
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
2xus_A	49	Breast cancer metastasis-suppressor 1; protein bin	98.92
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	81.65

>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}

Probab=98.92  E-value=3.4e-10  Score=74.41  Aligned_cols=32  Identities=34%  Similarity=0.490  Sum_probs=27.1

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy15420          4 LSFVPVGLREQLYRERIVEVESKLNEVELGQA   35 (187)
Q Consensus         4 ~~~~F~~lKEqlY~ErL~~L~~qL~el~~Gth   35 (187)
                      ||.+|++||||+|+|||++|+++|++|.+|+|
T Consensus        18 LEkqF~~LkEqlY~ERl~ql~~~Leel~~g~~   49 (49)
T 2xus_A           18 LEKQFSELKEKLFRERLSQLRLRLEEVGAERA   49 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            57899999999999999999999999999987

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=81.65  E-value=14  Score=29.44  Aligned_cols=18  Identities=22%  Similarity=0.418  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHhhc
Q psy15420         15 LYRERIVEVESKLNEVEL   32 (187)
Q Consensus        15 lY~ErL~~L~~qL~el~~   32 (187)
                      .|.||+.+|+++|.++..
T Consensus         3 ~~neKi~~LekQL~E~n~   20 (168)
T 3o0z_A            3 LANEKLSQLQKQLEEAND   20 (168)
T ss_dssp             -------CTHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHH
Confidence            378999999999988866

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00