Psyllid ID: psy15424

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
Protein Sequence
MRGRGGGGGGEREGGKVRETEEEEEEEVEKWERLGERGGDTDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFSSGE
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccEEEEEEccccccccccccccccccHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEcccHHHHHHHHHHHHHHHcccccccccEEEEEEEccccccccccccccccccHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccccccccccHHHHHEEEEEccccccHHHHHcHHHHcccc
Coil and Loop (DISEMBL)
mrgrggggggereggkvreteeeEEEEVEKWERlgerggdtdlcgikwrklvhgdsagtgyspgsepledpvLASYAKCLAGDILCvwrrvgtpqnggsgggggglfdsiglpqvtsvpplsLQAAKELWIFWygeepdlssivtpelfssge
Flexible Loop (DISEMBL)
mrgrggggggereggkvreteeeeeeevekwerlgerggdtdlcgikwRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEpdlssivtpelfssge
Low Complexity Region (SEG)
MrgrggggggereggkvreteeeeeeevekwerlgerGGDTDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNggsggggggLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFSSGE
Disordered region (IsUnstruct)
***************************************DTDLCGIKWRKLVHGD**************DPVLASYAKCLAGDILCVWRRVG*************************VPPLSLQAAKELWIFWYGEEPDL*************
Disordered Region (DISOPRED)
**********************************GERGGDTDLCGIKWRKLVHGDSA**G***GSEPLEDPVLASYAKCLAGDILCVWR***************************SVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL*****
Disordered Region (DISEMBL)
********************************RLGERGGDTDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFSSGE
Disordered Region (DISPRO)
********************EEEEEEEVEKWERLGERGGDTDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGT*************FDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELF****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRGRGGGGGGEREGGKVRETEEEEEEEVEKWERLGERGGDTDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFSSGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	153	2.2.26 [Sep-21-2011]
Q7KTX8	2618	Mediator of RNA polymeras	no	N/A	0.647	0.037	0.5	2e-24
Q71F56	2210	Mediator of RNA polymeras	yes	N/A	0.503	0.034	0.317	4e-10
Q6JPI3	2207	Mediator of RNA polymeras	yes	N/A	0.503	0.034	0.317	6e-10
Q9UHV7	2174	Mediator of RNA polymeras	no	N/A	0.490	0.034	0.324	1e-09
A2VCZ5	2102	Mediator of RNA polymeras	yes	N/A	0.490	0.035	0.324	2e-09
Q5SWW4	2171	Mediator of RNA polymeras	no	N/A	0.490	0.034	0.305	5e-09
Q93442	2862	Mediator of RNA polymeras	yes	N/A	0.529	0.028	0.363	7e-08
P0C657	2974	Mediator of RNA polymeras	N/A	N/A	0.496	0.025	0.346	5e-07

>sp|Q7KTX8|MED13_DROME Mediator of RNA polymerase II transcription subunit 13 OS=Drosophila melanogaster GN=skd PE=1 SV=1

 Score =  111 bits (277), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/112 (50%), Positives = 72/112 (64%), Gaps = 13/112 (11%)

Query: 41  TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
           TDLCGIKWRK V+G+      +  S+PL DP+L SY++C+  D+LCVWRRV + +   + 
Sbjct: 24  TDLCGIKWRKFVNGERP----NASSDPLADPILRSYSRCIQADMLCVWRRVQSTKTDHAD 79

Query: 101 GGGGGLFDSIGLPQVTSV---PPLSLQAAKELWIFWYGEEPDLSSIVTPELF 149
                  +++     TS    PPLSL AAKELWIFWYGEEPDLS +V  EL 
Sbjct: 80  P------NALTFEMTTSTKVHPPLSLAAAKELWIFWYGEEPDLSELVDAELL 125

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). Required for leg and eye development and macrochaete specification or differentiation. Negatively regulates sex comb development. Required for activated transcription of the MtnB and MtnD genes.
Drosophila melanogaster (taxid: 7227)

>sp|Q71F56|MD13L_HUMAN Mediator of RNA polymerase II transcription subunit 13-like OS=Homo sapiens GN=MED13L PE=1 SV=1

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)

Query: 42  DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
           +L GIKWR+   G     G    +   +DP+L S+ +CL  ++LCVWRR   P       
Sbjct: 26  ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 79

Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
                                    KELWIFW+G+EP+L  ++  EL
Sbjct: 80  ------------------------CKELWIFWWGDEPNLVGVIHHEL 102

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. This subunit may specifically regulate transcription of targets of the Wnt signaling pathway and SHH signaling pathway.

Homo sapiens (taxid: 9606)

>sp|Q6JPI3|MD13L_MOUSE Mediator of RNA polymerase II transcription subunit 13-like OS=Mus musculus GN=Med13l PE=1 SV=2

 Score = 63.2 bits (152), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)

Query: 42  DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
           +L GIKWR+   G     G    +   +DP+L S+ +CL  ++LCVWRR   P       
Sbjct: 26  ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 79

Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
                                    KELWIFW+G+EP+L  ++  EL
Sbjct: 80  ------------------------CKELWIFWWGDEPNLVGVIHHEL 102

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. This subunit may specifically regulate transcription of targets of the Wnt signaling pathway and SHH signaling pathway.

Mus musculus (taxid: 10090)

>sp|Q9UHV7|MED13_HUMAN Mediator of RNA polymerase II transcription subunit 13 OS=Homo sapiens GN=MED13 PE=1 SV=3

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 33/108 (30%)

Query: 42  DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
           DL GIKW+K V  G ++     P +E  EDP+L+S+++CL  D+L VWRR   P      
Sbjct: 24  DLTGIKWKKYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 75

Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
                                     +ELWIFW+GE+P  + ++  +L
Sbjct: 76  ------------------------GRRELWIFWWGEDPSFADLIHHDL 99

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Homo sapiens (taxid: 9606)

>sp|A2VCZ5|MD13L_DANRE Mediator of RNA polymerase II transcription subunit 13-like OS=Danio rerio GN=zgc:153454 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 33/108 (30%)

Query: 42  DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
           DL GIKW+  V  G ++     P +E  EDP+L S+++CL  D+L VWRR  TP      
Sbjct: 24  DLTGIKWKCFVWQGPTSSPILFPVTE--EDPILCSFSRCLKADVLSVWRRHQTP------ 75

Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
                                     +ELWIFW+G++P+ + +V  +L
Sbjct: 76  ------------------------GRRELWIFWWGDDPNFAELVHHDL 99

Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Danio rerio (taxid: 7955)

>sp|Q5SWW4|MED13_MOUSE Mediator of RNA polymerase II transcription subunit 13 OS=Mus musculus GN=Med13 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 33/108 (30%)

Query: 42  DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
           DL GIKW++ V  G ++     P +E  EDP+L+S+++CL  D+L VWRR   P      
Sbjct: 24  DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 75

Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
                                     +ELWIFW+G++P+ + ++  +L
Sbjct: 76  ------------------------GRRELWIFWWGKDPNFADLIHHDL 99

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Mus musculus (taxid: 10090)

>sp|Q93442|MED13_CAEEL Mediator of RNA polymerase II transcription subunit 13 OS=Caenorhabditis elegans GN=let-19 PE=1 SV=3

 Score = 56.2 bits (134), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 18/99 (18%)

Query: 42  DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
           +L GIKW+      +A  G +  +    D VL +Y+KCL   ILC WRR   P       
Sbjct: 41  ELPGIKWKCYRTKPNAPRGVALTA----DFVLKAYSKCLLDGILCTWRRKPLPPT----- 91

Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDL 140
                 D+   P++T+    S  A KELW+FWY +EP L
Sbjct: 92  ------DNKETPKLTN---FSNDAPKELWVFWYDDEPAL 121

Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). Required for asymmetric division of T-cells and for hypodermal development.

Caenorhabditis elegans (taxid: 6239)

>sp|P0C657|MED13_CAEBR Mediator of RNA polymerase II transcription subunit 13 OS=Caenorhabditis briggsae GN=let-19 PE=3 SV=2

 Score = 53.5 bits (127), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/101 (34%), Positives = 46/101 (45%), Gaps = 25/101 (24%)

Query: 42  DLCGIKWRKLVHGDSAGTGYSPGSEPL-EDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
           +L GIKW+      +A     P   PL  D VL +Y++CL   ILC WRR  +P  G + 
Sbjct: 41  ELPGIKWKCFRPKLNA-----PRGVPLTSDLVLKAYSRCLTDGILCTWRRKPSPPTGNN- 94

Query: 101 GGGGGLFDSIGLPQVTSVPP---LSLQAAKELWIFWYGEEP 138
                            +PP    S  + KELW+FWY  EP
Sbjct: 95  ---------------ELLPPTHFFSNDSPKELWVFWYDAEP 120

Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
242008648	2117	Thyroid hormone receptor-associated prot	0.679	0.049	0.654	2e-32
357625948	1884	hypothetical protein KGM_17578 [Danaus p	0.803	0.065	0.514	3e-26
350400114	1938	PREDICTED: mediator of RNA polymerase II	0.692	0.054	0.614	7e-26
328790302	1994	PREDICTED: mediator of RNA polymerase II	0.692	0.053	0.614	7e-26
350400120	1999	PREDICTED: mediator of RNA polymerase II	0.692	0.053	0.614	7e-26
340717955	1938	PREDICTED: mediator of RNA polymerase II	0.692	0.054	0.614	7e-26
380019945	1995	PREDICTED: mediator of RNA polymerase II	0.692	0.053	0.614	8e-26
340717957	1999	PREDICTED: mediator of RNA polymerase II	0.692	0.053	0.614	8e-26
383854209	1994	PREDICTED: mediator of RNA polymerase II	0.692	0.053	0.614	1e-25
170044775	134	conserved hypothetical protein [Culex qu	0.712	0.813	0.549	6e-25

>gi|242008648|ref|XP_002425114.1| Thyroid hormone receptor-associated protein, putative [Pediculus humanus corporis] gi|212508788|gb|EEB12376.1| Thyroid hormone receptor-associated protein, putative [Pediculus humanus corporis]

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/113 (65%), Positives = 86/113 (76%), Gaps = 9/113 (7%)

Query: 41  TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
           TDLCGIKWRKLVHG+   TG++P  EP EDP+L+S+++CLA DILCVWRRV T     S 
Sbjct: 3   TDLCGIKWRKLVHGE---TGFAP--EPSEDPILSSFSRCLAADILCVWRRVATAVPPSSD 57

Query: 101 GGGGGLFDSIGLPQVTSV--PPLSLQAAKELWIFWYGEEPDLSSIVTPELFSS 151
             GG LFD+I L Q   V  PPLSL AAKELWIFWYGEEPDLS +V+PEL +S
Sbjct: 58  INGG-LFDNIAL-QTAPVKHPPLSLHAAKELWIFWYGEEPDLSGLVSPELLAS 108

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357625948|gb|EHJ76217.1| hypothetical protein KGM_17578 [Danaus plexippus]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/138 (51%), Positives = 87/138 (63%), Gaps = 15/138 (10%)

Query: 16  KVRETEEEEEEEVEKWERLGERGGDTDLCGIKWRKLVHGDSAGTGYS--PGSEPLEDPVL 73
           K R    +     +  ER   R   T+L GIKWRKLV G+++G G     G+ PL DPV+
Sbjct: 37  KRRSDHRKHCTVCDDIER-ARRPSMTELYGIKWRKLVWGETSGVGAEGEEGAAPLADPVI 95

Query: 74  ASYAKCLAGDILCVWRRVGTPQNGGSGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFW 133
           +SYA+CLAGDILCVWRRV  PQ          L   IGL    + PPLSL+A+KELWIFW
Sbjct: 96  SSYARCLAGDILCVWRRVPAPQ---------PLDIDIGL---AAPPPLSLRASKELWIFW 143

Query: 134 YGEEPDLSSIVTPELFSS 151
           YGEEPDL+ +V PEL +S
Sbjct: 144 YGEEPDLNGLVAPELITS 161

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400114|ref|XP_003485744.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13-like isoform 1 [Bombus impatiens]

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 84/114 (73%), Gaps = 8/114 (7%)

Query: 41  TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVG-TPQNGG- 98
           TDLCGIKW+KLV G+ AG     G  PLEDPVL+S+++CLAGDILCVWRRV  TP   G 
Sbjct: 24  TDLCGIKWKKLVWGEVAGDF---GGTPLEDPVLSSFSRCLAGDILCVWRRVAATPATSGP 80

Query: 99  --SGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFS 150
             +   G G+FD +G+    + PPLSL AAKELWIFWYGEEPDLS +V+PEL +
Sbjct: 81  ATASATGAGIFD-LGIAPSPAPPPLSLTAAKELWIFWYGEEPDLSGLVSPELIA 133

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790302|ref|XP_393643.4| PREDICTED: mediator of RNA polymerase II transcription subunit 13-like [Apis mellifera]

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 84/114 (73%), Gaps = 8/114 (7%)

Query: 41  TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVG-TPQNGG- 98
           TDLCGIKW+KLV G+ AG     G  PLEDPVL+S+++CLAGDILCVWRRV  TP   G 
Sbjct: 24  TDLCGIKWKKLVWGEVAGDF---GGTPLEDPVLSSFSRCLAGDILCVWRRVAATPATSGP 80

Query: 99  --SGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFS 150
             +   G G+FD +G+    + PPLSL AAKELWIFWYGEEPDLS +V+PEL +
Sbjct: 81  ATASATGAGIFD-LGIAPSPAPPPLSLTAAKELWIFWYGEEPDLSGLVSPELIA 133

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400120|ref|XP_003485745.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13-like isoform 2 [Bombus impatiens]

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 84/114 (73%), Gaps = 8/114 (7%)

Query: 41  TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVG-TPQNGG- 98
           TDLCGIKW+KLV G+ AG     G  PLEDPVL+S+++CLAGDILCVWRRV  TP   G 
Sbjct: 24  TDLCGIKWKKLVWGEVAGDF---GGTPLEDPVLSSFSRCLAGDILCVWRRVAATPATSGP 80

Query: 99  --SGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFS 150
             +   G G+FD +G+    + PPLSL AAKELWIFWYGEEPDLS +V+PEL +
Sbjct: 81  ATASATGAGIFD-LGIAPSPAPPPLSLTAAKELWIFWYGEEPDLSGLVSPELIA 133

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717955|ref|XP_003397439.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13-like isoform 1 [Bombus terrestris]

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 84/114 (73%), Gaps = 8/114 (7%)

Query: 41  TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVG-TPQNGG- 98
           TDLCGIKW+KLV G+ AG     G  PLEDPVL+S+++CLAGDILCVWRRV  TP   G 
Sbjct: 24  TDLCGIKWKKLVWGEVAGDF---GGTPLEDPVLSSFSRCLAGDILCVWRRVAATPATSGP 80

Query: 99  --SGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFS 150
             +   G G+FD +G+    + PPLSL AAKELWIFWYGEEPDLS +V+PEL +
Sbjct: 81  ATASATGAGIFD-LGIAPSPAPPPLSLTAAKELWIFWYGEEPDLSGLVSPELIA 133

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019945|ref|XP_003693861.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13-like [Apis florea]

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 84/114 (73%), Gaps = 8/114 (7%)

Query: 41  TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVG-TPQNGG- 98
           TDLCGIKW+KLV G+ AG     G  PLEDPVL+S+++CLAGDILCVWRRV  TP   G 
Sbjct: 24  TDLCGIKWKKLVWGEVAGDF---GGTPLEDPVLSSFSRCLAGDILCVWRRVAATPATSGP 80

Query: 99  --SGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFS 150
             +   G G+FD +G+    + PPLSL AAKELWIFWYGEEPDLS +V+PEL +
Sbjct: 81  ATASATGAGIFD-LGIAPSPAPPPLSLTAAKELWIFWYGEEPDLSGLVSPELIA 133

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717957|ref|XP_003397440.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13-like isoform 2 [Bombus terrestris]

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 84/114 (73%), Gaps = 8/114 (7%)

Query: 41  TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVG-TPQNGG- 98
           TDLCGIKW+KLV G+ AG     G  PLEDPVL+S+++CLAGDILCVWRRV  TP   G 
Sbjct: 24  TDLCGIKWKKLVWGEVAGDF---GGTPLEDPVLSSFSRCLAGDILCVWRRVAATPATSGP 80

Query: 99  --SGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFS 150
             +   G G+FD +G+    + PPLSL AAKELWIFWYGEEPDLS +V+PEL +
Sbjct: 81  ATASATGAGIFD-LGIAPSPAPPPLSLTAAKELWIFWYGEEPDLSGLVSPELIA 133

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854209|ref|XP_003702614.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13-like [Megachile rotundata]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 86/114 (75%), Gaps = 8/114 (7%)

Query: 41  TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVG-TPQNGG- 98
           TDLCGIKW+KLV G+ AG G+  G  PLEDPVL+S+++CLAGDILCVWRRV  TP   G 
Sbjct: 24  TDLCGIKWKKLVWGEVAG-GF--GGTPLEDPVLSSFSRCLAGDILCVWRRVAATPSTSGP 80

Query: 99  --SGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFS 150
             +   G G+FD +G+    + PPLSL AAKELWIFWYGEEPDLS +++PEL +
Sbjct: 81  ATASATGAGIFD-LGIAPSPAPPPLSLTAAKELWIFWYGEEPDLSGLLSPELIA 133

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170044775|ref|XP_001850010.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167867791|gb|EDS31174.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 77/122 (63%), Gaps = 13/122 (10%)

Query: 36  ERGGDTDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQ 95
            R   TDLCGIKWRKL  G+         S PL+DPVL SY+KCL  DILCVWRRV  P+
Sbjct: 15  HRKQITDLCGIKWRKLAQGERPNAS----SNPLDDPVLRSYSKCLEVDILCVWRRVAAPK 70

Query: 96  NGGSGGGGGGLFDSIGLP-QVT--SV--PPLSLQAAKELWIFWYGEEPDLSSIVTPELFS 150
                     +F+ + +P  VT  SV  PPLSL AAKELWIFWYGEEPDL+ +V PEL  
Sbjct: 71  ---PAEQDPNVFE-MSIPGPVTGGSVIHPPLSLTAAKELWIFWYGEEPDLTDLVDPELLK 126

Query: 151 SG 152
           S 
Sbjct: 127 SA 128

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
FB|FBgn0003415	2618	skd "skuld" [Drosophila melano	0.660	0.038	0.518	2.8e-22
UNIPROTKB|F1N4I1	2189	LOC100848413 "Uncharacterized	0.320	0.022	0.408	1.5e-10
UNIPROTKB|J9JHV4	2194	MED13L "Uncharacterized protei	0.320	0.022	0.408	1.5e-10
MGI|MGI:2670178	2207	Med13l "mediator complex subun	0.320	0.022	0.408	1.5e-10
UNIPROTKB|Q71F56	2210	MED13L "Mediator of RNA polyme	0.320	0.022	0.408	1.5e-10
UNIPROTKB|Q9UHV7	2174	MED13 "Mediator of RNA polymer	0.333	0.023	0.462	3e-10
ZFIN|ZDB-GENE-030131-3529	2102	med13b "mediator complex subun	0.333	0.024	0.462	3.6e-10
UNIPROTKB|F1MYL8	2156	MED13 "Uncharacterized protein	0.333	0.023	0.444	4.8e-10
ZFIN|ZDB-GENE-070627-13	2175	med13a "mediator complex subun	0.307	0.021	0.46	4.9e-10
RGD|1304829	2155	Med13 "mediator complex subuni	0.333	0.023	0.444	1.2e-09

FB|FBgn0003415 skd "skuld" [Drosophila melanogaster (taxid:7227)]

 Score = 276 (102.2 bits), Expect = 2.8e-22, P = 2.8e-22
 Identities = 56/108 (51%), Positives = 69/108 (63%)

Query:    41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNXXXX 100
             TDLCGIKWRK V+G+         S+PL DP+L SY++C+  D+LCVWRRV + +     
Sbjct:    24 TDLCGIKWRKFVNGERPNAS----SDPLADPILRSYSRCIQADMLCVWRRVQSTKTDHAD 79

Query:   101 XXXXXLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
                   F+     +V   PPLSL AAKELWIFWYGEEPDLS +V  EL
Sbjct:    80 PNALT-FEMTTSTKVH--PPLSLAAAKELWIFWYGEEPDLSELVDAEL 124

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0009790 "embryo development" evidence=IMP

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=ISS;IDA;NAS

GO:0016592 "mediator complex" evidence=ISS;IDA;NAS;IPI

GO:0005634 "nucleus" evidence=IDA

GO:0045165 "cell fate commitment" evidence=IGI

GO:0045498 "sex comb development" evidence=IGI;IMP

GO:0006366 "transcription from RNA polymerase II promoter" evidence=NAS

GO:0004252 "serine-type endopeptidase activity" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0048749 "compound eye development" evidence=IMP

GO:0022416 "chaeta development" evidence=IMP

GO:0036011 "imaginal disc-derived leg segmentation" evidence=IMP

GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IGI

GO:0030177 "positive regulation of Wnt receptor signaling pathway" evidence=IMP

UNIPROTKB|F1N4I1 LOC100848413 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 112 (44.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query:    42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRR 90
             +L GIKWR+   G     G    +   +DP+L S+ +CL  ++LCVWRR
Sbjct:     6 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRR 54

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|J9JHV4 MED13L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 112 (44.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query:    42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRR 90
             +L GIKWR+   G     G    +   +DP+L S+ +CL  ++LCVWRR
Sbjct:    10 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRR 58

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

MGI|MGI:2670178 Med13l "mediator complex subunit 13-like" [Mus musculus (taxid:10090)]

 Score = 112 (44.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query:    42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRR 90
             +L GIKWR+   G     G    +   +DP+L S+ +CL  ++LCVWRR
Sbjct:    26 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRR 74

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IC

GO:0016592 "mediator complex" evidence=IDA

UNIPROTKB|Q71F56 MED13L "Mediator of RNA polymerase II transcription subunit 13-like" [Homo sapiens (taxid:9606)]

 Score = 112 (44.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query:    42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRR 90
             +L GIKWR+   G     G    +   +DP+L S+ +CL  ++LCVWRR
Sbjct:    26 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRR 74

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

UNIPROTKB|Q9UHV7 MED13 "Mediator of RNA polymerase II transcription subunit 13" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
 Identities = 25/54 (46%), Positives = 35/54 (64%)

Query:    42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTP 94
             DL GIKW+K V  G ++     P +E  EDP+L+S+++CL  D+L VWRR   P
Sbjct:    24 DLTGIKWKKYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP 75

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=NAS

GO:0046966 "thyroid hormone receptor binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0030521 "androgen receptor signaling pathway" evidence=IDA

GO:0003712 "transcription cofactor activity" evidence=IDA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IDA

GO:0004872 "receptor activity" evidence=IDA

GO:0016592 "mediator complex" evidence=IDA

GO:0030518 "intracellular steroid hormone receptor signaling pathway" evidence=IDA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IDA;TAS

GO:0042809 "vitamin D receptor binding" evidence=NAS

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

ZFIN|ZDB-GENE-030131-3529 med13b "mediator complex subunit 13b" [Danio rerio (taxid:7955)]

 Score = 118 (46.6 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
 Identities = 25/54 (46%), Positives = 34/54 (62%)

Query:    42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTP 94
             DL GIKW+  V  G ++     P +E  EDP+L S+++CL  D+L VWRR  TP
Sbjct:    24 DLTGIKWKCFVWQGPTSSPILFPVTE--EDPILCSFSRCLKADVLSVWRRHQTP 75

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1MYL8 MED13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 115 (45.5 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
 Identities = 24/54 (44%), Positives = 35/54 (64%)

Query:    42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTP 94
             DL GIKW++ V  G ++     P +E  EDP+L+S+++CL  D+L VWRR   P
Sbjct:     5 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP 56

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

ZFIN|ZDB-GENE-070627-13 med13a "mediator complex subunit 13a" [Danio rerio (taxid:7955)]

 Score = 113 (44.8 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
 Identities = 23/50 (46%), Positives = 32/50 (64%)

Query:    42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRR 90
             DL GIKW++ V  G  +     P +E  EDP+L S+++CL  D+L VWRR
Sbjct:    24 DLTGIKWKRYVWQGPISAPMLFPVTE--EDPILCSFSRCLKSDVLSVWRR 71

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

RGD|1304829 Med13 "mediator complex subunit 13" [Rattus norvegicus (taxid:10116)]

 Score = 115 (45.5 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 24/54 (44%), Positives = 35/54 (64%)

Query:    42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTP 94
             DL GIKW++ V  G ++     P +E  EDP+L+S+++CL  D+L VWRR   P
Sbjct:     8 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP 59

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA;ISO

GO:0003712 "transcription cofactor activity" evidence=ISO

GO:0003713 "transcription coactivator activity" evidence=IEA;ISO

GO:0004872 "receptor activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA;ISO

GO:0016592 "mediator complex" evidence=IEA;ISO

GO:0030518 "intracellular steroid hormone receptor signaling pathway" evidence=ISO

GO:0030521 "androgen receptor signaling pathway" evidence=IEA;ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0046966 "thyroid hormone receptor binding" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	153
pfam11597	370	pfam11597, Med13_N, Mediator complex subunit 13 N-	4e-17

>gnl|CDD|221146 pfam11597, Med13_N, Mediator complex subunit 13 N-terminal

 Score = 76.5 bits (188), Expect = 4e-17
 Identities = 42/104 (40%), Positives = 50/104 (48%), Gaps = 28/104 (26%)

Query: 41  TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
            DL GIKWR  V G       S G + LEDP+L+SY++CLA D L VWRR   P      
Sbjct: 15  ADLTGIKWRIYVWGGPP----SRGPDLLEDPILSSYSRCLAADDLEVWRRKQGP------ 64

Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIV 144
                                +  A KELWIFWYG EP+L  +V
Sbjct: 65  ------------------LVYNDPARKELWIFWYGPEPELLDLV 90

Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med13 is part of the ancillary kinase module, together with Med12, CDK8 and CycC, which in yeast is implicated in transcriptional repression, though most of this activity is likely attributable to the CDK8 kinase. The large Med12 and Med13 proteins are required for specific developmental processes in Drosophila, zebrafish, and Caenorhabditis elegans but their biochemical functions are not understood. Length = 370

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	153
KOG3600|consensus	2238		99.92
PF11597	401	Med13_N: Mediator complex subunit 13 N-terminal; I	99.92
PLN02705	681	beta-amylase	81.42

>KOG3600|consensus

Probab=99.92  E-value=2.5e-26  Score=224.30  Aligned_cols=71  Identities=45%  Similarity=0.845  Sum_probs=63.8

Q ss_pred             CCcccccCceeeeeecCCCCCCCCCCCCCCC-CchHHHHHHHHhhCCceeEEeecCCCCCCCCCCCCCCcccccCCCCcC
Q psy15424         38 GGDTDLCGIKWRKLVHGDSAGTGYSPGSEPL-EDPVLASYAKCLAGDILCVWRRVGTPQNGGSGGGGGGLFDSIGLPQVT  116 (153)
Q Consensus        38 ~~lTDL~GIKWRkyv~~~~~~~~~~p~~~pL-~DPVL~SYSRCL~adILCVWRR~~~p~~~~~~~~~~~~f~~~~~~~~~  116 (153)
                      -.|.||+|||||||+|+.++     |++.++ +|+||+||||||.+||||||||++.+                      
T Consensus        20 ~~l~el~gikwk~y~~k~~a-----p~~~~~t~d~vl~a~skcl~~~il~~wrr~~~~----------------------   72 (2238)
T KOG3600|consen   20 YALLELPGIKWKCYRTKPNA-----PRGVALTADFVLKAYSKCLLDGILCTWRRKPND----------------------   72 (2238)
T ss_pred             HHhhcCCCcceeEEeccCCC-----cceeeechhHHHHHHHHHHhhCceeeeecCCCC----------------------
Confidence            36899999999999998865     788888 99999999999999999999998753                      


Q ss_pred             CCCCccccccceeEEEecCCCCCCCcc
Q psy15424        117 SVPPLSLQAAKELWIFWYGEEPDLSSI  143 (153)
Q Consensus       117 ~~PplSl~~aKELWIFWYGeEPdLs~l  143 (153)
                              ++||||||||||||.|..+
T Consensus        73 --------~~kelwvfw~~dep~ll~~   91 (2238)
T KOG3600|consen   73 --------APKELWVFWYDDEPALLQK   91 (2238)
T ss_pred             --------CcceeEEEEeCCCcHHHHh
Confidence                    7799999999999988654

>PF11597 Med13_N: Mediator complex subunit 13 N-terminal; InterPro: IPR021643 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=99.92  E-value=4.8e-26  Score=197.58  Aligned_cols=83  Identities=51%  Similarity=0.824  Sum_probs=71.7

Q ss_pred             CcccccCceeeeeecCCCCCCCCCCCCCCCCchHHHHHHHHhhCCceeEEeecCCCCCCCCCCCCCCcccccCCCCcCCC
Q psy15424         39 GDTDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGGGGGGLFDSIGLPQVTSV  118 (153)
Q Consensus        39 ~lTDL~GIKWRkyv~~~~~~~~~~p~~~pL~DPVL~SYSRCL~adILCVWRR~~~p~~~~~~~~~~~~f~~~~~~~~~~~  118 (153)
                      .++||+|||||+|++..+++    ....+++||||+||+||++++|||+|||++.+...                     
T Consensus        15 ~l~~lsgI~WR~Y~~~~~~~----~~~~~~~dpvl~s~~~~~~~~~l~~~lR~~~~lv~---------------------   69 (401)
T PF11597_consen   15 ALDDLSGIKWRIYVWEPNAS----RSPGPLEDPVLSSYSRCLAADILEVWLRNQGCLVS---------------------   69 (401)
T ss_pred             eeccCCcceEEEeecCCCCC----CCCCCCCChHHHHHHHhhhhhHHHHHhhcCCCCCC---------------------
Confidence            58999999999999977653    45678899999999999999999999998887432                     


Q ss_pred             CCccccccceeEEEecCCCCCCCcccchhhh
Q psy15424        119 PPLSLQAAKELWIFWYGEEPDLSSIVTPELF  149 (153)
Q Consensus       119 PplSl~~aKELWIFWYGeEPdLs~lV~pEL~  149 (153)
                         ....+|||||||||+|||+.+++++|+.
T Consensus        70 ---~~~~rkeLWvF~~~~ep~~~~~~~~~~~   97 (401)
T PF11597_consen   70 ---YDADRKELWVFWYGPEPDLLDPVHPEDE   97 (401)
T ss_pred             ---CCCCCcEEEEEecCCCcccccceeeccc
Confidence               1238999999999999999999998854

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med13 is part of the ancillary kinase module, together with Med12, CDK8 and CycC, which in yeast is implicated in transcriptional repression, though most of this activity is likely attributable to the CDK8 kinase. The large Med12 and Med13 proteins are required for specific developmental processes in Drosophila, zebrafish, and Caenorhabditis elegans but their biochemical functions are not understood [].

>PLN02705 beta-amylase

Probab=81.42  E-value=4.4  Score=39.57  Aligned_cols=48  Identities=33%  Similarity=0.562  Sum_probs=31.5

Q ss_pred             CCCCCCCCcccCcccccchHHHHHHHHHHH-------------------------------HhhccCCcccccCceeee
Q psy15424          3 GRGGGGGGEREGGKVRETEEEEEEEVEKWE-------------------------------RLGERGGDTDLCGIKWRK   50 (153)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~lTDL~GIKWRk   50 (153)
                      +.||||||.+.|.+-||.|.|....-|.=.                               ++-|+|-+.++.|.+.|+
T Consensus        66 ~~~~~~~~~~~~~~~~~~e~e~~~~rer~rrai~~ki~aglr~~g~~~lp~~~d~n~vl~al~~eagw~v~~dg~~yr~  144 (681)
T PLN02705         66 SSGGGGGGGGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEADGTTYRQ  144 (681)
T ss_pred             cCCCCCCCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHhcCcEEcCCCCcccC
Confidence            456666777777777766665544444332                               234677788999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00