Psyllid ID: psy15484
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1233 | 2.2.26 [Sep-21-2011] | |||||||
| Q9VCU9 | 2249 | Endoribonuclease Dcr-1 OS | yes | N/A | 0.390 | 0.213 | 0.592 | 0.0 | |
| P34529 | 1910 | Endoribonuclease dcr-1 OS | yes | N/A | 0.357 | 0.230 | 0.465 | 1e-110 | |
| Q8R418 | 1916 | Endoribonuclease Dicer OS | yes | N/A | 0.381 | 0.245 | 0.451 | 1e-110 | |
| A0MQH0 | 1917 | Endoribonuclease Dicer OS | yes | N/A | 0.381 | 0.245 | 0.451 | 1e-110 | |
| Q9UPY3 | 1922 | Endoribonuclease Dicer OS | yes | N/A | 0.381 | 0.244 | 0.449 | 1e-109 | |
| Q6TUI4 | 1923 | Endoribonuclease Dicer OS | yes | N/A | 0.381 | 0.244 | 0.451 | 1e-109 | |
| Q25BN1 | 1921 | Endoribonuclease Dicer OS | yes | N/A | 0.379 | 0.243 | 0.445 | 1e-109 | |
| Q6TV19 | 1865 | Endoribonuclease Dicer OS | yes | N/A | 0.381 | 0.252 | 0.445 | 1e-108 | |
| B3DLA6 | 1893 | Endoribonuclease Dicer OS | yes | N/A | 0.424 | 0.276 | 0.412 | 1e-107 | |
| Q9SP32 | 1909 | Endoribonuclease Dicer ho | yes | N/A | 0.317 | 0.204 | 0.347 | 9e-54 |
| >sp|Q9VCU9|DCR1_DROME Endoribonuclease Dcr-1 OS=Drosophila melanogaster GN=Dcr-1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 636 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/559 (59%), Positives = 391/559 (69%), Gaps = 78/559 (13%)
Query: 740 VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
++ EP + K+ I+ P+ FSFD QPDL H GPSP
Sbjct: 1687 IEIEPPTSTKAITSAIL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1741
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
+RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K GE MIAT
Sbjct: 1742 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1801
Query: 842 KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
KFEP DNWLPP Y+VPK LE ALIEA P W L ++K LS ++ E++++K L
Sbjct: 1802 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADAL 1861
Query: 902 DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
+ Q+ +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1862 GLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1921
Query: 947 GALLFMSWLGLKV---------------IPPVTNPESKHLS------------------- 972
GALLFM+WLG++V IP T P ++++
Sbjct: 1922 GALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPN 1981
Query: 973 -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
D LL GF++FEES+ Y+F+D+SYLLQAMTHASY N LTDCYQRLEFLGDA+LDY
Sbjct: 1982 ATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 2041
Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV+
Sbjct: 2042 LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR 2101
Query: 1088 MQAENDFTL-NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYY 1146
+Q EN + + Y L E ECD+AED+EVPKALGD+FES+AGAI+LDS MSLD VW VY
Sbjct: 2102 IQQENGHCISEEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYS 2161
Query: 1147 EIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIG 1206
+M EIE+ S SVPKSPIRELLELEPE A+F KPEKLADGRRVRVTV+VF KG+++GIG
Sbjct: 2162 NMMSPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIG 2221
Query: 1207 RNYCIAKCTAAKCALKHLK 1225
RNY IAKCTAAKCAL+ LK
Sbjct: 2222 RNYRIAKCTAAKCALRQLK 2240
|
Essential for RNA interference (RNAi); double-stranded RNA (dsRNA) induces potent and specific gene silencing. RNAi is mediated by the RNA-induced silencing complex (RISC), a sequence-specific, multicomponent nuclease that destroys or silences messenger RNAs homologous to the silencing trigger. May carry out the initiation step of RNAi by cleaving dsRNA to produce 22 bp dsRNAs (siRNAs) which target the selective destruction of homologous RNAs. Drosophila melanogaster (taxid: 7227) EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: - |
| >sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis elegans GN=dcr-1 PE=1 SV=3 | Back alignment and function description |
|---|
| >sp|Q8R418|DICER_MOUSE Endoribonuclease Dicer OS=Mus musculus GN=Dicer1 PE=1 SV=3 | Back alignment and function description |
|---|
| >sp|A0MQH0|DICER_CRIGR Endoribonuclease Dicer OS=Cricetulus griseus GN=DICER1 PE=2 SV=3 | Back alignment and function description |
|---|
| >sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens GN=DICER1 PE=1 SV=3 | Back alignment and function description |
|---|
| >sp|Q6TUI4|DICER_BOVIN Endoribonuclease Dicer OS=Bos taurus GN=DICER1 PE=2 SV=3 | Back alignment and function description |
|---|
| >sp|Q25BN1|DICER_CHICK Endoribonuclease Dicer OS=Gallus gallus GN=DICER1 PE=2 SV=3 | Back alignment and function description |
|---|
| >sp|Q6TV19|DICER_DANRE Endoribonuclease Dicer OS=Danio rerio GN=dicer1 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|B3DLA6|DICER_XENTR Endoribonuclease Dicer OS=Xenopus tropicalis GN=dicer1 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1233 | ||||||
| 307190121 | 1976 | Endoribonuclease Dcr-1 [Camponotus flori | 0.964 | 0.601 | 0.490 | 0.0 | |
| 328716579 | 1609 | PREDICTED: endoribonuclease Dcr-1-like i | 0.949 | 0.727 | 0.510 | 0.0 | |
| 411170363 | 2239 | dicer-1 [Nilaparvata lugens] | 0.982 | 0.541 | 0.508 | 0.0 | |
| 383862048 | 1952 | PREDICTED: endoribonuclease Dcr-1-like [ | 0.970 | 0.613 | 0.492 | 0.0 | |
| 332020119 | 1979 | Endoribonuclease Dcr-1 [Acromyrmex echin | 0.964 | 0.600 | 0.489 | 0.0 | |
| 422398915 | 1952 | endoribonuclease Dicer-1 [Apis mellifera | 0.969 | 0.612 | 0.497 | 0.0 | |
| 380025724 | 1966 | PREDICTED: endoribonuclease Dcr-1-like [ | 0.967 | 0.606 | 0.494 | 0.0 | |
| 170181362 | 1946 | dicer-1 CG4792-PA-like protein [Apis mel | 0.969 | 0.614 | 0.496 | 0.0 | |
| 340727238 | 1957 | PREDICTED: LOW QUALITY PROTEIN: endoribo | 0.973 | 0.613 | 0.495 | 0.0 | |
| 307195788 | 1807 | Endoribonuclease Dcr-1 [Harpegnathos sal | 0.948 | 0.647 | 0.493 | 0.0 |
| >gi|307190121|gb|EFN74275.1| Endoribonuclease Dcr-1 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 1223 bits (3164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 676/1377 (49%), Positives = 881/1377 (63%), Gaps = 188/1377 (13%)
Query: 1 MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
++AI +VNRYCA+LPSD FTRL P +I + ++IM+TCS+RLPINSPLK VT +
Sbjct: 626 FNSAISLVNRYCAKLPSDTFTRLTPEWSIEVVNIQETIMYTCSLRLPINSPLKYVVTSYP 685
Query: 61 MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE-FINLYENTE-PVVP---KTPEIET 115
MP + +A R+AA++ C L+ E+D++L+P+ KE F E+ E P +P +T E
Sbjct: 686 MPNRAMARRMAALQMCVDLHRENEIDDNLLPIGKENFKAKPEDAEVPALPDESRTDFSEA 745
Query: 116 YPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENS 175
P +TKRRQ+Y+K+ A T+CRP V P YLY + M L+CP+P+EQN RGR+I+PPE S
Sbjct: 746 RPGTTKRRQYYYKKTAEALTDCRPIVGVPSYLYHINMILSCPLPEEQNTRGRRIYPPEES 805
Query: 176 PQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVL 235
G ILT K IPK+C FPI+TR GEV V ++L + ++L E + F++Y FT VL
Sbjct: 806 AIGFGILTLKEIPKLCPFPIYTRSGEVHVQLKLSKQTIILDEVQVERVDTFLNYTFTNVL 865
Query: 236 KLKKYLMLFDPNCSENSYFIVP----TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
+L+KYLMLFDPN SENSY IVP T + + +DW F+ I ++ N V +PE++R
Sbjct: 866 RLQKYLMLFDPNASENSYIIVPVKIFTTDEGSDVCVDWNFLECIYQNRNAVPTKVPEEDR 925
Query: 292 ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
+NF FD SK+ DAV+MPWYR+Q +P YFYVAEI TN++P+S FP + Y TFEEYY K
Sbjct: 926 KNFKFDPSKYYDAVIMPWYRSQDQPQYFYVAEICTNLNPKSSFPG--HDYSTFEEYYLKK 983
Query: 352 YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
YG+QIQNLEQ LLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R RE+L +KQ+LV
Sbjct: 984 YGIQIQNLEQSLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVA 1043
Query: 412 ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFN 471
ELC IHPFPASLWR++V LP ILYR+NALLLA++IR VA I LG+ +L+ EWP +
Sbjct: 1044 ELCAIHPFPASLWRQAVCLPCILYRINALLLANQIRCQVAQMINLGQQVLNSDFEWPALD 1103
Query: 472 FGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCD 531
FGW + ++ ++ +T+ A ++ +VN ++ + C + ++ +K+ +C+
Sbjct: 1104 FGWSLAEVLKR-SKETEKAKQTKNENAQVNSP--SNNMIFNKCQNTSSQDVNNKQNIMCN 1160
Query: 532 SGNEQENEDEEKLDKIKSD--ENKTESQGVEPWVEIGTWSNEMA--AGVE---------- 577
E + E K D ++D EN + +EIGTWSN+MA VE
Sbjct: 1161 -----EKQRELKFDDTETDQVENNIADNQKDDELEIGTWSNDMAWSNNVEMNTMDYDADN 1215
Query: 578 --CKPYPMT----------------PPMFSDDEDSNDDLSSVDFDVEDDFRENEKEDTLQ 619
K +P+ P + D D +DD+ S F D E+E L+
Sbjct: 1216 DNLKSFPLNVTVLPQDFGWNDIRYGSPTYESDFDESDDVYSDGFADTSDESEDESRG-LK 1274
Query: 620 IQFKGKYSAEAICE----GEEESALKIQDWIES-----NFFW-------EEIDVNHINSK 663
I + + AEA+ + ++E KI D +E+ N FW E + H +
Sbjct: 1275 ISYMAENVAEAVEDEKQVSKQEINKKILDLLETEKNFDNNFWMYAEKDEELLLAKHKKAH 1334
Query: 664 AEFVKVIQDKL----TFYEGQLELIKNR-------IDVENTIKENQPV--HIVRQSFDNA 710
EF K + + TF E++ R +D E+T +++ +VR+ D
Sbjct: 1335 YEFAKKKESDIMMDGTFISCNSEIMIKRKNSSSCQVDREHTDYKHKDYIESVVRKFTDEV 1394
Query: 711 SNPSKNTAILTEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQ 770
N K +A + + INKL+ D+ FSFD+Q
Sbjct: 1395 LN--KKSAKFLHVAKKINKLDEINYTNGDL------------------------FSFDYQ 1428
Query: 771 PDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPNVHEGKL 812
P+L+NH GPSP +RLETIGDSFLKYAIT +LYCTY N+HEGKL
Sbjct: 1429 PELKNHPGPSPSLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKL 1488
Query: 813 SHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPAS 872
SHLRSKQVSN NL++LG+QK+ GESMIATKFEP DNWLPP Y+VPK LE ALIE+G P++
Sbjct: 1489 SHLRSKQVSNLNLYRLGRQKMLGESMIATKFEPHDNWLPPCYYVPKELEQALIESGVPSA 1548
Query: 873 LWNCLSLPNLKELSPEKVLEIIK---QKCVDLDCTVDM----------NVQSVVPYNLVT 919
LWN +P L+ ++P ++ ++++ +K V + +D N++ +PYNL+T
Sbjct: 1549 LWNQADIPTLQAVNPTEITQLVRETEEKLVIMKSELDKNESRMSNNLDNLRCFIPYNLIT 1608
Query: 920 QHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP----------------PV 963
QHSIPDKSIADCVEALIGAYLI CGPRGALLFM+WLG+ V+P P
Sbjct: 1609 QHSIPDKSIADCVEALIGAYLIACGPRGALLFMTWLGIHVLPAEEVCVMSESEPEERIPG 1668
Query: 964 TNPESKHLSD---------------------------------VLLDGFDKFEESINYRF 990
+ P K +S+ ++LDG+D+ E+SI Y+F
Sbjct: 1669 STPYVKGISEQGGATWTQICYGKLEEPQNPLLRYIPDPENELRMMLDGYDELEKSIGYKF 1728
Query: 991 KDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRS 1050
+D SYLLQA THASY N LTDCYQRLEFLGDA+LDYLITRHLYED R HSPG LTDLRS
Sbjct: 1729 RDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSRQHSPGALTDLRS 1788
Query: 1051 ALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM-EGECDE 1109
ALVNN IFASLAVR GFH +F+HLSPGL VI RFV++Q EN ++++EYYL+ E EC+E
Sbjct: 1789 ALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENGHSISEEYYLIGEEECEE 1848
Query: 1110 AEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELL 1169
AED+EVPKALGD+FES+AGAIYLDSGMSLD VW VYY IMKSEIE+ S +VPKSPIRELL
Sbjct: 1849 AEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEIEQFSTNVPKSPIRELL 1908
Query: 1170 ELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKS 1226
ELEPE A+F +PEKLADGRRVRVTV+VFGKGS+KGIGRNY IAKCTAAKCALK LKS
Sbjct: 1909 ELEPETAKFGRPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIAKCTAAKCALKKLKS 1965
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328716579|ref|XP_001944314.2| PREDICTED: endoribonuclease Dcr-1-like isoform 1 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
| >gi|411170363|gb|AFW16070.1| dicer-1 [Nilaparvata lugens] | Back alignment and taxonomy information |
|---|
| >gi|383862048|ref|XP_003706496.1| PREDICTED: endoribonuclease Dcr-1-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
| >gi|332020119|gb|EGI60563.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
| >gi|422398915|ref|NP_001116485.2| endoribonuclease Dicer-1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
| >gi|380025724|ref|XP_003696618.1| PREDICTED: endoribonuclease Dcr-1-like [Apis florea] | Back alignment and taxonomy information |
|---|
| >gi|170181362|gb|ACB11577.1| dicer-1 CG4792-PA-like protein [Apis mellifera] | Back alignment and taxonomy information |
|---|
| >gi|340727238|ref|XP_003401955.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dcr-1-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
| >gi|307195788|gb|EFN77602.1| Endoribonuclease Dcr-1 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1233 | ||||||
| FB|FBgn0039016 | 2249 | Dcr-1 "Dicer-1" [Drosophila me | 0.450 | 0.246 | 0.475 | 3.1e-306 | |
| UNIPROTKB|A0MQH0 | 1917 | DICER1 "Endoribonuclease Dicer | 0.386 | 0.248 | 0.439 | 6.2e-226 | |
| UNIPROTKB|E2RIN4 | 1923 | DICER1 "Uncharacterized protei | 0.386 | 0.247 | 0.437 | 7.5e-225 | |
| UNIPROTKB|Q25BN1 | 1921 | DICER1 "Endoribonuclease Dicer | 0.385 | 0.247 | 0.438 | 2e-224 | |
| UNIPROTKB|B3DLA6 | 1893 | dicer1 "Endoribonuclease Dicer | 0.423 | 0.275 | 0.406 | 3.3e-224 | |
| UNIPROTKB|F1NJX0 | 1921 | DICER1 "Endoribonuclease Dicer | 0.385 | 0.247 | 0.438 | 4.2e-224 | |
| UNIPROTKB|F1NP11 | 1925 | DICER1 "Endoribonuclease Dicer | 0.385 | 0.246 | 0.434 | 8.9e-223 | |
| UNIPROTKB|F1MCQ5 | 1920 | DICER1 "Endoribonuclease Dicer | 0.386 | 0.247 | 0.439 | 6e-219 | |
| UNIPROTKB|Q6TUI4 | 1923 | DICER1 "Endoribonuclease Dicer | 0.386 | 0.247 | 0.439 | 6.9e-218 | |
| MGI|MGI:2177178 | 1916 | Dicer1 "dicer 1, ribonuclease | 0.386 | 0.248 | 0.439 | 1.3e-210 |
| FB|FBgn0039016 Dcr-1 "Dicer-1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1328 (472.5 bits), Expect = 3.1e-306, Sum P(5) = 3.1e-306
Identities = 277/583 (47%), Positives = 385/583 (66%)
Query: 1 MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
+ +AI +VN+YCARLPSD FT+L + + + +F ++RLPINSPLK + G
Sbjct: 822 LGSAIALVNKYCARLPSDTFTKLTALWRCTRNERAGVTLFQYTLRLPINSPLKHDIVGLP 881
Query: 61 MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE-FINLYENTE--PVVPKTPEI---- 113
MPT+ LA R+AA++AC L+ + ELD+ L P+ KE F L + E + P+ +I
Sbjct: 882 MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 941
Query: 114 -ETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
E P +TKRRQ+Y+KR+AS F +CRP PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 942 DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 1001
Query: 173 ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
E++ QG ILTTK IPK+ +F IFTR GEV+VS+EL + V+L+ E + F++Y FT
Sbjct: 1002 EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1061
Query: 233 KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
VL+L+K+LMLFDP+ +EN FIVPTV + + IDW+F+ LI + N + + +P++ER
Sbjct: 1062 NVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDEER 1121
Query: 292 ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
+ FD +F+DAVVMPWYRNQ +P YFYVAEI ++ P S FP + Y+TF+ YY +K
Sbjct: 1122 QAQPFDPQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1179
Query: 352 YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAXXXXXXXXXXXXXLGKKQLLVP 411
YGL IQN QPLLDVDHTS RLNFLTPRYVNRKG+ L L +KQ+LVP
Sbjct: 1180 YGLTIQNTSQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1239
Query: 412 ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV-ILDEKVEWPPF 470
ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR V++++GLG+ I DE EWP
Sbjct: 1240 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1299
Query: 471 NFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
+FGW + ++ +K ++K + + DDT +N +D + V + T +ET
Sbjct: 1300 DFGWSLSEVLKK-SRESKQ-KESLKDDT-ING--KDLADVEKKPTS---------EETQL 1345
Query: 531 DSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMA 573
D ++ + ++ ++ I E K Q + ++EIGTWSN+MA
Sbjct: 1346 DKDSKDDKVEKSAIELIIEGEEKL--QEADDFIEIGTWSNDMA 1386
|
|
| UNIPROTKB|A0MQH0 DICER1 "Endoribonuclease Dicer" [Cricetulus griseus (taxid:10029)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RIN4 DICER1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q25BN1 DICER1 "Endoribonuclease Dicer" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B3DLA6 dicer1 "Endoribonuclease Dicer" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NJX0 DICER1 "Endoribonuclease Dicer" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NP11 DICER1 "Endoribonuclease Dicer" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MCQ5 DICER1 "Endoribonuclease Dicer" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q6TUI4 DICER1 "Endoribonuclease Dicer" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2177178 Dicer1 "dicer 1, ribonuclease type III" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.1.26 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1233 | |||
| cd02843 | 122 | cd02843, PAZ_dicer_like, PAZ domain, dicer_like su | 1e-48 | |
| COG0571 | 235 | COG0571, Rnc, dsRNA-specific ribonuclease [Transcr | 4e-36 | |
| cd00593 | 133 | cd00593, RIBOc, RIBOc | 3e-35 | |
| TIGR02191 | 220 | TIGR02191, RNaseIII, ribonuclease III, bacterial | 3e-33 | |
| smart00535 | 129 | smart00535, RIBOc, Ribonuclease III family | 5e-32 | |
| PRK00102 | 229 | PRK00102, rnc, ribonuclease III; Reviewed | 3e-30 | |
| pfam03368 | 91 | pfam03368, dsRNA_bind, Double stranded RNA binding | 9e-25 | |
| smart00949 | 138 | smart00949, PAZ, This domain is named PAZ after th | 7e-23 | |
| pfam00636 | 91 | pfam00636, Ribonuclease_3, Ribonuclease III domain | 2e-21 | |
| smart00535 | 129 | smart00535, RIBOc, Ribonuclease III family | 6e-19 | |
| cd00593 | 133 | cd00593, RIBOc, RIBOc | 2e-17 | |
| pfam02170 | 114 | pfam02170, PAZ, PAZ domain | 2e-15 | |
| pfam00636 | 91 | pfam00636, Ribonuclease_3, Ribonuclease III domain | 1e-14 | |
| PRK12371 | 235 | PRK12371, PRK12371, ribonuclease III; Reviewed | 2e-11 | |
| cd02844 | 135 | cd02844, PAZ_CAF_like, PAZ domain, CAF_like subfam | 1e-09 | |
| COG0571 | 235 | COG0571, Rnc, dsRNA-specific ribonuclease [Transcr | 2e-08 | |
| cd02845 | 117 | cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subf | 1e-07 | |
| cd02825 | 115 | cd02825, PAZ, PAZ domain, named PAZ after the prot | 1e-07 | |
| PRK14718 | 467 | PRK14718, PRK14718, ribonuclease III; Provisional | 3e-06 | |
| PRK00102 | 229 | PRK00102, rnc, ribonuclease III; Reviewed | 2e-05 | |
| PRK12372 | 413 | PRK12372, PRK12372, ribonuclease III; Reviewed | 2e-05 | |
| TIGR02191 | 220 | TIGR02191, RNaseIII, ribonuclease III, bacterial | 3e-05 | |
| cd00593 | 133 | cd00593, RIBOc, RIBOc | 7e-05 |
| >gnl|CDD|239209 cd02843, PAZ_dicer_like, PAZ domain, dicer_like subfamily | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 1e-48
Identities = 71/124 (57%), Positives = 85/124 (68%), Gaps = 2/124 (1%)
Query: 261 DSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFY 320
DS + IDW+FM I + + P++ R+ F FD ++DAVVMPWYRN +P YFY
Sbjct: 1 DSSTLDIDWEFMEKIEANARIGPRATPDEARQPFKFDAEDYQDAVVMPWYRNFDQPQYFY 60
Query: 321 VAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRY 380
VAEI T++ P S FP Y+TFEEYY KY L IQNL QPLLDVDHTS RLN LTPRY
Sbjct: 61 VAEICTDLRPLSKFPG--PEYETFEEYYKKKYKLDIQNLNQPLLDVDHTSTRLNLLTPRY 118
Query: 381 VNRK 384
VN+K
Sbjct: 119 VNQK 122
|
Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. Length = 122 |
| >gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|238333 cd00593, RIBOc, RIBOc | Back alignment and domain information |
|---|
| >gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial | Back alignment and domain information |
|---|
| >gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family | Back alignment and domain information |
|---|
| >gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|190615 pfam03368, dsRNA_bind, Double stranded RNA binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >gnl|CDD|216036 pfam00636, Ribonuclease_3, Ribonuclease III domain | Back alignment and domain information |
|---|
| >gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family | Back alignment and domain information |
|---|
| >gnl|CDD|238333 cd00593, RIBOc, RIBOc | Back alignment and domain information |
|---|
| >gnl|CDD|216914 pfam02170, PAZ, PAZ domain | Back alignment and domain information |
|---|
| >gnl|CDD|216036 pfam00636, Ribonuclease_3, Ribonuclease III domain | Back alignment and domain information |
|---|
| >gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|239210 cd02844, PAZ_CAF_like, PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|239211 cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial | Back alignment and domain information |
|---|
| >gnl|CDD|238333 cd00593, RIBOc, RIBOc | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1233 | |||
| KOG0701|consensus | 1606 | 100.0 | ||
| KOG1817|consensus | 533 | 100.0 | ||
| COG0571 | 235 | Rnc dsRNA-specific ribonuclease [Transcription] | 100.0 | |
| PRK12371 | 235 | ribonuclease III; Reviewed | 100.0 | |
| PRK12372 | 413 | ribonuclease III; Reviewed | 100.0 | |
| PRK14718 | 467 | ribonuclease III; Provisional | 100.0 | |
| PRK00102 | 229 | rnc ribonuclease III; Reviewed | 100.0 | |
| TIGR02191 | 220 | RNaseIII ribonuclease III, bacterial. This family | 100.0 | |
| cd02843 | 122 | PAZ_dicer_like PAZ domain, dicer_like subfamily. D | 99.96 | |
| PF03368 | 90 | Dicer_dimer: Dicer dimerisation domain; InterPro: | 99.95 | |
| PF14622 | 128 | Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ | 99.93 | |
| smart00535 | 129 | RIBOc Ribonuclease III family. | 99.91 | |
| cd00593 | 133 | RIBOc RIBOc. Ribonuclease III C terminal domain. T | 99.9 | |
| PF00636 | 114 | Ribonuclease_3: Ribonuclease III domain; InterPro: | 99.84 | |
| cd02844 | 135 | PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( | 99.83 | |
| PF00636 | 114 | Ribonuclease_3: Ribonuclease III domain; InterPro: | 99.83 | |
| PRK12371 | 235 | ribonuclease III; Reviewed | 99.83 | |
| COG0571 | 235 | Rnc dsRNA-specific ribonuclease [Transcription] | 99.82 | |
| PRK14718 | 467 | ribonuclease III; Provisional | 99.8 | |
| PRK12372 | 413 | ribonuclease III; Reviewed | 99.79 | |
| cd00593 | 133 | RIBOc RIBOc. Ribonuclease III C terminal domain. T | 99.76 | |
| smart00535 | 129 | RIBOc Ribonuclease III family. | 99.75 | |
| PF14622 | 128 | Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ | 99.74 | |
| PRK00102 | 229 | rnc ribonuclease III; Reviewed | 99.71 | |
| KOG1817|consensus | 533 | 99.7 | ||
| TIGR02191 | 220 | RNaseIII ribonuclease III, bacterial. This family | 99.66 | |
| cd02845 | 117 | PAZ_piwi_like PAZ domain, Piwi_like subfamily. In | 99.63 | |
| KOG3769|consensus | 333 | 99.56 | ||
| PF02170 | 135 | PAZ: PAZ domain; InterPro: IPR003100 This domain i | 99.48 | |
| KOG1042|consensus | 845 | 99.45 | ||
| KOG0701|consensus | 1606 | 99.41 | ||
| cd02825 | 115 | PAZ PAZ domain, named PAZ after the proteins Piwi | 98.85 | |
| PHA02701 | 183 | ORF020 dsRNA-binding PKR inhibitor; Provisional | 98.23 | |
| cd02846 | 114 | PAZ_argonaute_like PAZ domain, argonaute_like subf | 98.21 | |
| PHA03103 | 183 | double-strand RNA-binding protein; Provisional | 98.15 | |
| cd00048 | 68 | DSRM Double-stranded RNA binding motif. Binding is | 98.09 | |
| smart00358 | 67 | DSRM Double-stranded RNA binding motif. | 98.04 | |
| PF00035 | 67 | dsrm: Double-stranded RNA binding motif; InterPro: | 98.03 | |
| PLN03202 | 900 | protein argonaute; Provisional | 97.9 | |
| PF00035 | 67 | dsrm: Double-stranded RNA binding motif; InterPro: | 97.0 | |
| COG1939 | 132 | Ribonuclease III family protein [Replication, reco | 96.77 | |
| cd00048 | 68 | DSRM Double-stranded RNA binding motif. Binding is | 96.68 | |
| PF14709 | 80 | DND1_DSRM: double strand RNA binding domain from D | 96.54 | |
| KOG3769|consensus | 333 | 95.84 | ||
| KOG3732|consensus | 339 | 95.79 | ||
| smart00358 | 67 | DSRM Double-stranded RNA binding motif. | 95.58 | |
| KOG3732|consensus | 339 | 94.48 | ||
| COG1939 | 132 | Ribonuclease III family protein [Replication, reco | 94.45 | |
| PF14709 | 80 | DND1_DSRM: double strand RNA binding domain from D | 93.39 | |
| KOG4334|consensus | 650 | 92.63 | ||
| KOG2777|consensus | 542 | 88.94 | ||
| KOG1041|consensus | 876 | 84.13 | ||
| PHA03103 | 183 | double-strand RNA-binding protein; Provisional | 81.64 |
| >KOG0701|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-83 Score=811.95 Aligned_cols=950 Identities=40% Similarity=0.573 Sum_probs=688.8
Q ss_pred eeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCcccchhhhhcccCCCCCCCCCC-C-CCC
Q psy15484 38 IMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTP-E-IET 115 (1233)
Q Consensus 38 ~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh~~GeLdd~LlP~~~e~~~~~~~~~~~~~~e~-~-~~~ 115 (1233)
..+.-+|+||.++|.+..|.| +|.+||++|++||+++|.+++....+.++....++|. . -.+
T Consensus 451 ~~~~~~v~~~~~~p~~~~~~~----------------~~~~l~~~~~~d~~~~~~gk~~~~~~~~~~~~~~ee~~~~~~~ 514 (1606)
T KOG0701|consen 451 VPFLSTVVLPVNSPLKMCIVG----------------LCLKLHKIGELDDCLHPKGKEPKACLEEVDTEEEEEVLQGFEP 514 (1606)
T ss_pred CCcceeEEEecCchHHHHHHH----------------hHHHHHHhhhhhhhhcccccchHHhhhhhccccchhhccccCC
Confidence 457778999999998765666 9999999999999999999998877766555555543 2 268
Q ss_pred CCCccccccccccccccccccCCCCCCCCeEEEEEEeEecCCCCccccccCcccCCCCCCCCceeEEecCCCCCCCCcce
Q psy15484 116 YPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPI 195 (1233)
Q Consensus 116 ~~gs~Kr~~~y~~~~p~~l~~~~p~~~~~~~Ly~i~~~l~~p~~~~~~~~~r~iy~~~~~~~~fglLt~k~LP~ip~FpL 195 (1233)
++|++||+++|.+.++.++..+.+..+++||+|.+.+++..|.++++|.++|.+|.|.....+||+|+.+++|++|.||+
T Consensus 515 ~~~~s~~~~~~~k~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~e~~n~~~r~~~~~~~~~~~~~~l~~~~i~~~~~~~~ 594 (1606)
T KOG0701|consen 515 RPGSSKRRQQYLKHIARERNDSVPKADQPCYLYVIGLELTMPLPEERNFERRKLYPPEDLTYCFGILTAKLIPKIPHFPV 594 (1606)
T ss_pred CCCcccccccccchhHHHhcccccCCCCceeeeeeccceecCCchhcccccccccCchhhhhhhcccchhhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcEEEEEEEEcCcceecCHHHHHHHHHHHHHHHHHHhhccccceecCCCCCCCcEEEeeecC--CCCCceechhhhh
Q psy15484 196 FTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVS--DSEQIVIDWKFMT 273 (1233)
Q Consensus 196 f~~~g~~~V~l~~~~~~i~lt~eql~~l~~Fh~~lF~dVl~l~k~~~~fd~~~~~~~YllvPl~~--~~~~~~IDW~~v~ 273 (1233)
|+++|++++++........++.+|++....||.++|..|+.+.+..+.|++..+...++|+|... +.....|+|.+|.
T Consensus 595 a~~sG~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~~l~~~llp~~~~~~~~~~~i~~k~l~ 674 (1606)
T KOG0701|consen 595 ATRSGEVKVSLLLAFSEALVKSEQLDEIQEFLNYIFTEVLRLAKINLEFDPKTAELIETLLPLNVLADKRAIIIVRKFLE 674 (1606)
T ss_pred eeccCchhHHHHHhhhhhhcchhhccCcchhcccchhhhhhhhccccccCCchhhHHHHhcccccccccchhhhHHHHHH
Confidence 99999999999988887888999999999999999999999889999999999999999999875 2345779999999
Q ss_pred hhhhccCCccCCChhhhhhcCccCcccccCcEEeccccCCCCCeEEEEEeecCCCCCCCCCCCCCCCccCHHHHHHhhhC
Q psy15484 274 LISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYG 353 (1233)
Q Consensus 274 ~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~VV~p~Y~n~d~~~~Y~V~~V~~dltP~S~Fp~~~~~~~Ty~eYy~~kyg 353 (1233)
.+..+...++..+..+.+....|+..+++|++++ |+|.+++++ |+..|.....|.|.||+ ..+.||..||..+|+
T Consensus 675 ~iv~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~--~rn~~~~~~-~~~~v~~~~~pss~~~g--~~~~~~~~v~~~~~~ 749 (1606)
T KOG0701|consen 675 AIVAPSDLMPIPSKDEVRKAKYFDGEDSQDAVGM--YRNDDQPQF-YVAEVLPLLAPSSLFPG--LDYETFNEVYRFKYA 749 (1606)
T ss_pred HHhCcccccCCCChhhhhhhhhcccccchhhhhh--hhcccccce-eeeeeeeeccchhcCCC--cchheeeeeeecccc
Confidence 9887756666666677777899999999999999 999888776 99999999999999999 789999999999999
Q ss_pred ccccCCCCceEEecccccccccccccccccccccccCCcHHHHHhhhhcCCccEEEcccccccccCcHHHHHHHHhhhHH
Q psy15484 354 LQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSI 433 (1233)
Q Consensus 354 i~i~~~~QPLL~v~~~s~r~NlL~~r~~~~~g~~~~~~s~~~~~~~~~~~~~~~~LvPELC~i~~ipas~w~~a~~LPSI 433 (1233)
+.|++..||+++|++++.|+|++.+|..++.|.+++.++..+++.+.+..+.... +|+.+++.|+.+.|+|.+
T Consensus 750 ~~i~~~~q~~~~~~~~~s~l~~~~~r~~~~~~~~l~~~s~~~e~~~~es~~~~~~-------~h~~~~s~~~~~~~~p~~ 822 (1606)
T KOG0701|consen 750 LTITSLNQSLLDVDHTSSRLNLLVPRGDNQKGSALPNSSSETERLKDESLEHSLI-------IHPALASLWRRAVCLPEI 822 (1606)
T ss_pred chhhhccccccccccchhhhcccCchhhccccceeecccchhhhhhHHHhhccCC-------CCcCcchhhhhhccCcch
Confidence 9999999999999999999999999999999999999998888777666554433 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCccchhhhhhhhccCCCccccccccccccccCCcccccccchhh
Q psy15484 434 LYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEI 513 (1233)
Q Consensus 434 l~Ri~~lLlA~elr~~i~~~~~lg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (1233)
|||+ ++.|..++..-|.. + +| .+| + .++++... +......++.. .+.++-. ..
T Consensus 823 v~~v--~~tg~~~s~~ta~~--l----i~-------~~~--~--~i~~~~f~--~~~~~~~~~~~--~~~~~~~----~~ 875 (1606)
T KOG0701|consen 823 LYRV--LLTGALVSLSTAVD--L----IP-------HDF--S--SILSKSFE--KEASKSDKNKD--EYSCDLA----LP 875 (1606)
T ss_pred heee--ccccceeeeecccc--h----hh-------hhh--h--hccchhhc--cccccCCCCcc--ccceeec----cc
Confidence 9999 77777776543331 1 11 111 0 22333321 00000000000 0000000 00
Q ss_pred hhchhhhhhc----cccccccCcCCCccchhhhhhhhccccccccccCCCCCceeccccccccc-c---ccCCC------
Q psy15484 514 CTEIAKVEIV----DKKETVCDSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMA-A---GVECK------ 579 (1233)
Q Consensus 514 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ei~~~~~~~~-~---~~~~~------ 579 (1233)
+..| ++.+ ..-..+++.+-.. ..-..+ .+..+.. +-.++..+.|++..+ . +....
T Consensus 876 ~~~~--~~~~~~~~~~~~~~~q~av~l--~~~~~~----~~~~~~~---d~~~~n~~~~~~~~~~~~~i~~a~~p~~~~~ 944 (1606)
T KOG0701|consen 876 KENP--VKQVLGKANQLDKVNQQAVEL--QECIQL----HEVGALD---DHLVFNKGVADQVLAKRESISLATRPELVSP 944 (1606)
T ss_pred CCCc--hhhhhchhhhhhHHHhhhhhh--hhhhhh----hcccccc---cccccCccccchhhhhccccccccCcccccc
Confidence 0011 0000 0000000000000 000000 0000000 000000112222211 0 00000
Q ss_pred --CCCCCCCCCCCCC-----CCCCCCCCCCCCCCcccccchhhhhHHHhhccccchhhhhcchhhhhhhhhhhcccccch
Q psy15484 580 --PYPMTPPMFSDDE-----DSNDDLSSVDFDVEDDFRENEKEDTLQIQFKGKYSAEAICEGEEESALKIQDWIESNFFW 652 (1233)
Q Consensus 580 --~~~~~~~~~~~~~-----~~~~~~~~~~~~~t~d~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~ 652 (1233)
|.+....-.+... .+..+..+.. -. .....|++...- + +.|
T Consensus 945 ~~~~~~~~s~~~~n~l~~~~~~~~~~~s~~--~~-----------------~~~~~E~~e~i~-----------n--~~~ 992 (1606)
T KOG0701|consen 945 FIPEPPTTSHLISNRLSPSSPSNSDLNSLL--PN-----------------KRSDWEAVEKIL-----------N--FRY 992 (1606)
T ss_pred cccCCchhhhhhhhhcCccCCCCCCccccc--cc-----------------cccccccccccc-----------c--cce
Confidence 0000000000000 0000000000 00 001112111000 0 000
Q ss_pred hhhhhccccchhhHHHHhhhchhhhhhhhhhhhhccccccccccCCccccccccccCCCCCCCcchhHHHHHHhhhcccc
Q psy15484 653 EEIDVNHINSKAEFVKVIQDKLTFYEGQLELIKNRIDVENTIKENQPVHIVRQSFDNASNPSKNTAILTEILENINKLNT 732 (1233)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1233)
. | . .+.|+ -..+...++
T Consensus 993 ~---------------------------F--------------------------s-~~~~~-i~~~~s~LL-------- 1009 (1606)
T KOG0701|consen 993 V---------------------------F--------------------------S-ISLAS-IALSTSLLL-------- 1009 (1606)
T ss_pred e---------------------------c--------------------------c-ccccc-cccchhHHH--------
Confidence 0 0 0 00000 000000000
Q ss_pred CCcccccccCCCCCCCCCcccCcccCCCCCCCCcccCCCCCcCCCCCCCcchhhhhhHHHHHHHHHHHHHhCCCCCcchh
Q psy15484 733 YGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKL 812 (1233)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~L 812 (1233)
+.-+.......+++||||+||||+||++++++||++||..+||+|
T Consensus 1010 -----------------------------------EAlT~~~~~~s~s~Erle~Lgds~Lk~avsr~l~L~ypd~~Egql 1054 (1606)
T KOG0701|consen 1010 -----------------------------------EALTTSSCQDSFSLERLELLGDSLLKLAVSRHLFLTYPDLDEGQL 1054 (1606)
T ss_pred -----------------------------------HHhhcCccccchhHHHHHhhHHHHHHHHHHHHHHHhCCcccchhH
Confidence 111112222478999999999999999999999999999999999
Q ss_pred HHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccchhhhHHHHHhcCCCC---ccccccCCCCcccCChhH
Q psy15484 813 SHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPA---SLWNCLSLPNLKELSPEK 889 (1233)
Q Consensus 813 s~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 889 (1233)
+.+|+..|+|.||+++|..+||++||+.+.|+|...|+|+.+..-. +....+... ..|.. -.+.
T Consensus 1055 s~lr~~~~~~~nl~~la~~~gl~~~~~~~~fep~~~~~p~~~~~~~----~~~k~~~~~~~~~~~~e---------~~e~ 1121 (1606)
T KOG0701|consen 1055 SRLRDVNVSNDNLARLAVKKGLYSYLRHEGFEPSRWWVPGQLDVNN----VDCKDLSGDQNYILYKE---------LDEK 1121 (1606)
T ss_pred HHHHHhcccccchhhhhhcccchhhccccccccccccccccccccc----ccccccccccccccccc---------hhhh
Confidence 9999999999999999999999999999999999889888732110 000000000 00100 0111
Q ss_pred HHHHhhhccccccccccccccccccccccc--cccCCCchhHHHHHHHHHHHHhcCChhHHH-----HHHHHhcccccCC
Q psy15484 890 VLEIIKQKCVDLDCTVDMNVQSVVPYNLVT--QHSIPDKSIADCVEALIGAYLIECGPRGAL-----LFMSWLGLKVIPP 962 (1233)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~--~~~l~dK~iADvvEALIGA~~l~~G~~~a~-----~~l~wlgi~~~~~ 962 (1233)
+..+...+... ..+++... +.|...|++||++||||||+|+++|..++. +||+|.|+.....
T Consensus 1122 ~~df~e~~~~~-----------~~~~~~~~~~~~~~~~ks~adl~eaLlga~~vD~~~~~~~~~~~~~~lk~~~~~~dy~ 1190 (1606)
T KOG0701|consen 1122 IKDFQEAMEKE-----------DGDSRSKGGDHDWLAPKSPADLLEALLGAIYVDGGLLETFETIGDSFLKWSITNYDYD 1190 (1606)
T ss_pred hhHHHHhhhcc-----------CCcccccccccceecCCCHHHHHHHHHHhhhhhccchhhhhHHHHHHHhhhhhhhhhh
Confidence 11111111110 01122222 588999999999999999999999999888 9999999876431
Q ss_pred C---------------------------------C---------------------------------------------
Q psy15484 963 V---------------------------------T--------------------------------------------- 964 (1233)
Q Consensus 963 ~---------------------------------~--------------------------------------------- 964 (1233)
. +
T Consensus 1191 ~~e~~~~~~~~~~~s~~~~~~~~~~ler~l~~~~~~~~~~l~~~~~~~~s~~~~~ld~~erl~~~~d~vld~l~~~~~~~ 1270 (1606)
T KOG0701|consen 1191 TLEPKHAGKLSFRRSKIVKKKNLDRLERELGLKFKFLEAALLVQAFIHCSLRAEGLDATERLEFLGDAVLDKLSDKHPFE 1270 (1606)
T ss_pred cccccchhhhhhhhhhHhhhhhHHHHHHhhcccchhhhhhcchhhcccccccccccchHHHHHhhHHHHHHHHHHhhhHh
Confidence 0 0
Q ss_pred ----------------------------------------------------------------CCCChh----------
Q psy15484 965 ----------------------------------------------------------------NPESKH---------- 970 (1233)
Q Consensus 965 ----------------------------------------------------------------~p~~~~---------- 970 (1233)
.+.+..
T Consensus 1271 ~~~~~~~~~lt~~~~~~v~~l~e~~~~~~v~~~l~~~l~~~s~~~~K~i~d~v~sli~~~~~~~~~~s~l~~~~~~~~l~ 1350 (1606)
T KOG0701|consen 1271 VFIRLDGGELTDLREAGVNTLNENDLNVKVPKSLPYNLLDQSSVLEKSIADSVEALIGASLSEGGPSSALLFMDWPPILL 1350 (1606)
T ss_pred hhhcccCcchhhhhhhhhhhhhhcccccccCCcceeeehhhccCccchHHHHHHHhhhhhhhccCCCccccccccccccc
Confidence 000000
Q ss_pred ----------h---hHHHHhhHHHHHHHcCCccCCHhHHHhhcccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHhcc
Q psy15484 971 ----------L---SDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDE 1037 (1233)
Q Consensus 971 ----------~---~~~~~~~~~~le~~LgY~Fk~~~LL~~AlTH~Sy~~~~~~~~yeRLEFLGDAVLd~lvt~~Ly~~~ 1037 (1233)
. ...+. .+..+|..|||.|.+..++.+|+||.||..+..+.||||||||||+|++++|++|+|...
T Consensus 1351 ~i~es~~~~~~~~~~~~l~-~~~~~e~~l~y~f~~~~~l~~a~th~s~~~~~~~~C~qrleflgd~vld~~it~hl~~~~ 1429 (1606)
T KOG0701|consen 1351 DIPESIASPDSIDELRQLL-SFGKFEEKLNYRFKLKPYLTQATTHASYIYNRITDCYQRLEFLGDAVLDYLITKHLYEDP 1429 (1606)
T ss_pred cccccccccchhHHHHHHH-HHHhhhcccchhhhhhhcccccccccccccCccchhhhhHHHhHHhhhhhhhhhcccccc
Confidence 0 11122 266889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHhhChHHHHHHHHHcCcchhhhhcCcchHHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCc
Q psy15484 1038 RAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPK 1117 (1233)
Q Consensus 1038 p~~~pg~Lt~lRsalVsN~~La~iA~~lgL~~~l~~~s~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pK 1117 (1233)
+..+||.+|++|+++|+|...|.+|++.++|+|+++.++.+...|.+++..+..++.... .+..+....||
T Consensus 1430 ~~~sp~~~td~rsa~vnn~~~a~~av~~~~~K~~~~~~~~l~~~I~~~v~~~~q~~~~~~---------~~~~edievpK 1500 (1606)
T KOG0701|consen 1430 RQHSPGVLTDLRSALVNNTIFASLAVKADLHKFIIAASPGLIHNIDRFVSFQLQSNLDSL---------FGWEEDIEVPK 1500 (1606)
T ss_pred cccCchhhhhhhhHhhccccchhhHHhhcchhHHHhhccccccchHHHHHHHHhhccccC---------CCchhhcccch
Confidence 999999999999999999999999999999999999999999999999998776542110 23456689999
Q ss_pred chhchhhccccchhhcCCCCHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHhhccccCcccCCccccCCCEEEEEEEEC
Q psy15484 1118 ALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVF 1197 (1233)
Q Consensus 1118 vLaDvfEAlIGAIylDsG~dl~~v~~~i~~ll~p~i~~~~~~~pk~pl~eL~e~~~~~~~f~~~~~~~~~~~~~v~V~V~ 1197 (1233)
++||+||++.||||+|+| .++.+.+..+...+|+.+++|+....+....|+..+...+.+..+++|.|.
T Consensus 1501 a~gdi~esiagai~~dsg-----------~~~~~~~~~~~a~p~~s~~~E~~~~h~~~~~~~~~~k~~d~~~~~~tv~~~ 1569 (1606)
T KOG0701|consen 1501 ALGDIFESIAGAIKLDSG-----------NMMEPCIEKFWALPPRSPIRELLELHPERALFGKCEKVADAGKVRVTVDVF 1569 (1606)
T ss_pred hhhhhhhcccceeecCcc-----------cccchHhhcCcCCCCccchhhhccccceeeccchhhhhhhccceEEEEEec
Confidence 999999999999999999 456777888888899999999999998888899888888889999999999
Q ss_pred CeEEEEEEeCCHHHHHHHHHHHHHHHhhhcC
Q psy15484 1198 GKGSYKGIGRNYCIAKCTAAKCALKHLKSAK 1228 (1233)
Q Consensus 1198 g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~~ 1228 (1233)
++..+.|.|.+++.||..||+.|++.|....
T Consensus 1570 ~~~~~~~~g~~~~~aK~s~~k~A~~ll~~~~ 1600 (1606)
T KOG0701|consen 1570 NKEVFAGEGRNYRIAKASAAKAALKLLKKLG 1600 (1606)
T ss_pred ccchhhhcchhhhhhhhhHHHHHHHHHHHhh
Confidence 9999999999999999999999999987654
|
|
| >KOG1817|consensus | Back alignment and domain information |
|---|
| >COG0571 Rnc dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
| >PRK12371 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >PRK12372 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >PRK14718 ribonuclease III; Provisional | Back alignment and domain information |
|---|
| >PRK00102 rnc ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >TIGR02191 RNaseIII ribonuclease III, bacterial | Back alignment and domain information |
|---|
| >cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily | Back alignment and domain information |
|---|
| >PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases | Back alignment and domain information |
|---|
| >PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B | Back alignment and domain information |
|---|
| >smart00535 RIBOc Ribonuclease III family | Back alignment and domain information |
|---|
| >cd00593 RIBOc RIBOc | Back alignment and domain information |
|---|
| >PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 | Back alignment and domain information |
|---|
| >cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
| >PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 | Back alignment and domain information |
|---|
| >PRK12371 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >COG0571 Rnc dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
| >PRK14718 ribonuclease III; Provisional | Back alignment and domain information |
|---|
| >PRK12372 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >cd00593 RIBOc RIBOc | Back alignment and domain information |
|---|
| >smart00535 RIBOc Ribonuclease III family | Back alignment and domain information |
|---|
| >PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B | Back alignment and domain information |
|---|
| >PRK00102 rnc ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >KOG1817|consensus | Back alignment and domain information |
|---|
| >TIGR02191 RNaseIII ribonuclease III, bacterial | Back alignment and domain information |
|---|
| >cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
| >KOG3769|consensus | Back alignment and domain information |
|---|
| >PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >KOG1042|consensus | Back alignment and domain information |
|---|
| >KOG0701|consensus | Back alignment and domain information |
|---|
| >cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional | Back alignment and domain information |
|---|
| >cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
| >PHA03103 double-strand RNA-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd00048 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
| >smart00358 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
| >PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions [] | Back alignment and domain information |
|---|
| >PLN03202 protein argonaute; Provisional | Back alignment and domain information |
|---|
| >PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions [] | Back alignment and domain information |
|---|
| >COG1939 Ribonuclease III family protein [Replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd00048 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
| >PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 | Back alignment and domain information |
|---|
| >KOG3769|consensus | Back alignment and domain information |
|---|
| >KOG3732|consensus | Back alignment and domain information |
|---|
| >smart00358 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
| >KOG3732|consensus | Back alignment and domain information |
|---|
| >COG1939 Ribonuclease III family protein [Replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 | Back alignment and domain information |
|---|
| >KOG4334|consensus | Back alignment and domain information |
|---|
| >KOG2777|consensus | Back alignment and domain information |
|---|
| >KOG1041|consensus | Back alignment and domain information |
|---|
| >PHA03103 double-strand RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1233 | ||||
| 3c4t_A | 265 | Structure Of Rnaseiiib And Dsrna Binding Domains Of | 2e-86 | ||
| 3c4b_A | 265 | Structure Of Rnaseiiib And Dsrna Binding Domains Of | 1e-81 | ||
| 2eb1_A | 200 | Crystal Structure Of The C-Terminal Rnase Iii Domai | 2e-63 | ||
| 3o2r_D | 144 | Structural Flexibility In Region Involved In Dimer | 2e-13 | ||
| 3n3w_A | 248 | 2.2 Angstrom Resolution Crystal Structure Of Nuclea | 4e-13 | ||
| 3o2r_A | 170 | Structural Flexibility In Region Involved In Dimer | 6e-13 | ||
| 1yyk_A | 221 | Crystal Structure Of Rnase Iii From Aquifex Aeolicu | 2e-12 | ||
| 1yz9_A | 221 | Crystal Structure Of Rnase Iii Mutant E110q From Aq | 5e-12 | ||
| 2ez6_A | 221 | Crystal Structure Of Aquifex Aeolicus Rnase Iii (d4 | 7e-12 | ||
| 1yyo_A | 221 | Crystal Structure Of Rnase Iii Mutant E110k From Aq | 7e-12 | ||
| 1rc7_A | 220 | Crystal Structure Of Rnase Iii Mutant E110k From Aq | 7e-12 | ||
| 1i4s_A | 147 | Crystal Structure Of Rnase Iii Endonuclease Domain | 9e-12 | ||
| 1jfz_A | 154 | Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii En | 1e-11 | ||
| 2a11_A | 242 | Crystal Structure Of Nuclease Domain Of Ribonuclase | 2e-06 | ||
| 1o0w_A | 252 | Crystal Structure Of Ribonuclease Iii (Tm1102) From | 2e-06 | ||
| 3rv0_A | 341 | Crystal Structure Of K. Polysporus Dcr1 Without The | 6e-04 | ||
| 2kou_A | 102 | Dicer Like Protein Length = 102 | 7e-04 | ||
| 3rv1_A | 246 | Crystal Structure Of The N-Terminal And Rnase Iii D | 7e-04 |
| >pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 | Back alignment and structure |
|
| >pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 | Back alignment and structure |
| >pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of Human Dicer Length = 200 | Back alignment and structure |
| >pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 248 | Back alignment and structure |
| >pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 170 | Back alignment and structure |
| >pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.5-Angstrom Resolution Length = 221 | Back alignment and structure |
| >pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.1- Angstrom Resolution Length = 221 | Back alignment and structure |
| >pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n) Complexed With Product Of Double-stranded Rna Processing Length = 221 | Back alignment and structure |
| >pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Double-stranded Rna At 2.9- Angstrom Resolution Length = 221 | Back alignment and structure |
| >pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Ds-Rna At 2.15 Angstrom Resolution Length = 220 | Back alignment and structure |
| >pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.15 Angstrom Resolution Length = 147 | Back alignment and structure |
| >pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution Length = 154 | Back alignment and structure |
| >pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase Iii From Mycobacterium Tuberculosis Length = 242 | Back alignment and structure |
| >pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From Thermotoga Maritima At 2.0 A Resolution Length = 252 | Back alignment and structure |
| >pdb|3RV0|A Chain A, Crystal Structure Of K. Polysporus Dcr1 Without The C-Terminal Dsrbd Length = 341 | Back alignment and structure |
| >pdb|2KOU|A Chain A, Dicer Like Protein Length = 102 | Back alignment and structure |
| >pdb|3RV1|A Chain A, Crystal Structure Of The N-Terminal And Rnase Iii Domains Of K. Polysporus Dcr1 E224q Mutant Length = 246 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 | Back alignment and structure |
|---|
Score = 293 bits (753), Expect = 3e-91
Identities = 165/265 (62%), Positives = 205/265 (77%), Gaps = 3/265 (1%)
Query: 966 PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
P+++ + L+ GF+ FE+ INYRFK+K+YLLQA THASY NT+TDCYQRLEFLGDAIL
Sbjct: 2 PDAEKTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 61
Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+ +H +FK +SP L VI F
Sbjct: 62 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 121
Query: 1086 VKMQAENDFTLNQEYYLMEGECDE--AEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
VK Q E + + L E DE EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+
Sbjct: 122 VKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQ 181
Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
VYY +M+ IE+ S +VP+SP+RELLE+EPE A+FS E+ DG +VRVTVEV GKG +K
Sbjct: 182 VYYPMMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 240
Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAK 1228
G+GR+Y IAK AA+ AL+ LK+ +
Sbjct: 241 GVGRSYRIAKSAAARRALRSLKANQ 265
|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 | Back alignment and structure |
|---|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 | Back alignment and structure |
|---|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 | Back alignment and structure |
|---|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 | Back alignment and structure |
|---|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 | Back alignment and structure |
|---|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 | Back alignment and structure |
|---|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 | Back alignment and structure |
|---|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 | Back alignment and structure |
|---|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 | Back alignment and structure |
|---|
| >2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana} Length = 102 | Back alignment and structure |
|---|
| >3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Length = 170 | Back alignment and structure |
|---|
| >3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Length = 170 | Back alignment and structure |
|---|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 | Back alignment and structure |
|---|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 | Back alignment and structure |
|---|
| >3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Length = 246 | Back alignment and structure |
|---|
| >3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Length = 246 | Back alignment and structure |
|---|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 | Back alignment and structure |
|---|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 | Back alignment and structure |
|---|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1233 | |||
| 2qvw_A | 756 | GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral | 100.0 | |
| 3c4b_A | 265 | Endoribonuclease dicer; RNAse, dsRNA binding prote | 100.0 | |
| 2nug_A | 221 | Ribonuclease III, RNAse III; dsRNA, RNA interferen | 100.0 | |
| 3n3w_A | 248 | Ribonuclease III; nuclease domain, ribonuclase III | 100.0 | |
| 1o0w_A | 252 | Ribonuclease III, RNAse III; TM1102, structural ge | 100.0 | |
| 2a11_A | 242 | Ribonuclease III, RNAse III; nuclease domain, stru | 100.0 | |
| 3rv0_A | 341 | K. polysporus DCR1; RNAse III enzyme, RNA binding | 100.0 | |
| 3o2r_A | 170 | Ribonuclease III; structural genomics, center for | 99.97 | |
| 3rv1_A | 246 | K. polysporus DCR1; RNAse III enzyme, RNA binding | 99.97 | |
| 2kou_A | 102 | Dicer-like protein 4; ATP-binding, endonuclease, h | 99.95 | |
| 2qvw_A | 756 | GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral | 99.89 | |
| 3o2r_A | 170 | Ribonuclease III; structural genomics, center for | 99.8 | |
| 3rv1_A | 246 | K. polysporus DCR1; RNAse III enzyme, RNA binding | 99.77 | |
| 3n3w_A | 248 | Ribonuclease III; nuclease domain, ribonuclase III | 99.75 | |
| 3c4b_A | 265 | Endoribonuclease dicer; RNAse, dsRNA binding prote | 99.73 | |
| 3o7v_X | 124 | PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, | 99.73 | |
| 2a11_A | 242 | Ribonuclease III, RNAse III; nuclease domain, stru | 99.71 | |
| 2nug_A | 221 | Ribonuclease III, RNAse III; dsRNA, RNA interferen | 99.7 | |
| 3rv0_A | 341 | K. polysporus DCR1; RNAse III enzyme, RNA binding | 99.7 | |
| 1o0w_A | 252 | Ribonuclease III, RNAse III; TM1102, structural ge | 99.69 | |
| 1u61_A | 138 | Hypothetical protein; structural genomics, PSI, pr | 99.69 | |
| 3qir_A | 148 | PIWI-like protein 2; structural genomics consortiu | 99.64 | |
| 2xfm_A | 150 | MIWI, PIWI-like protein 1; RNA-protein complex, di | 99.6 | |
| 1u61_A | 138 | Hypothetical protein; structural genomics, PSI, pr | 99.58 | |
| 2gsl_A | 137 | Hypothetical protein; alpha-helical protein, struc | 99.58 | |
| 2gsl_A | 137 | Hypothetical protein; alpha-helical protein, struc | 99.48 | |
| 1x48_A | 88 | Interferon-induced, double-stranded RNA- activated | 98.44 | |
| 3llh_A | 90 | RISC-loading complex subunit tarbp2; DSRBD, DSRM, | 98.43 | |
| 2l33_A | 91 | Interleukin enhancer-binding factor 3; structural | 98.43 | |
| 3p1x_A | 75 | Interleukin enhancer-binding factor 3; structural | 98.4 | |
| 3adl_A | 88 | RISC-loading complex subunit tarbp2; TRBP2, miRNA | 98.35 | |
| 2khx_A | 85 | Ribonuclease 3; drosha, RNA binding domain, hydrol | 98.34 | |
| 1vyn_A | 143 | Argonaute2; nucleic acid binding, RNA interference | 98.33 | |
| 1di2_A | 69 | XLRBPA, double stranded RNA binding protein A; pro | 98.31 | |
| 1t4n_A | 94 | Ribonuclease III; DSRBD, RNA-binding, hydrolase; N | 98.29 | |
| 2dix_A | 84 | Interferon-inducible double stranded RNA- dependen | 98.29 | |
| 1x47_A | 98 | DGCR8 protein; structural genomics, DSRM domain, N | 98.26 | |
| 2cpn_A | 89 | TAR RNA-binding protein 2; double-stranded RNA bin | 98.25 | |
| 2dmy_A | 97 | Spermatid perinuclear RNA-binding protein; DSRM do | 98.23 | |
| 3adj_A | 76 | F21M12.9 protein; HYL1, miRNA processing, RNA bind | 98.21 | |
| 2b7t_A | 73 | Double-stranded RNA-specific editase 1; RNA editin | 98.2 | |
| 1x49_A | 97 | Interferon-induced, double-stranded RNA- activated | 98.2 | |
| 3adg_A | 73 | F21M12.9 protein; HYL1, miRNA processing mechanism | 98.19 | |
| 1whq_A | 99 | RNA helicase A; double-stranded RNA binding domain | 98.19 | |
| 3mj0_A | 124 | Protein argonaute-2; argonaut, PAZ domain, 3'-END | 98.17 | |
| 1uhz_A | 89 | Staufen (RNA binding protein) homolog 2; DSRM, sta | 98.17 | |
| 1t4o_A | 117 | Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro | 98.15 | |
| 1ekz_A | 76 | DSRBDIII, maternal effect protein (staufen); struc | 98.14 | |
| 1whn_A | 128 | Hypothetical protein riken cDNA 2310016K04; double | 98.12 | |
| 2l2n_A | 103 | Hyponastic leave 1; DSRBD, miRNA, RNA binding prot | 98.1 | |
| 2b7v_A | 71 | Double-stranded RNA-specific editase 1; RNA editin | 98.07 | |
| 2ljh_A | 114 | Double-stranded RNA-specific editase ADAR; DSRBD, | 98.05 | |
| 1uil_A | 113 | Double-stranded RNA-binding motif; structural geno | 97.94 | |
| 4f3t_A | 861 | Protein argonaute-2; hydrolase/gene regulation, RN | 97.73 | |
| 2yt4_A | 232 | Protein DGCR8; DSRBD, RNA binding domain, RNA bind | 97.6 | |
| 1qu6_A | 179 | Protein kinase PKR; dsRNA-binding domain, solution | 97.55 | |
| 2l3j_A | 236 | Double-stranded RNA-specific editase 1; editing, d | 97.42 | |
| 1u04_A | 771 | Argonaute, hypothetical protein PF0537; RNAI, sile | 97.37 | |
| 1qu6_A | 179 | Protein kinase PKR; dsRNA-binding domain, solution | 97.04 | |
| 2l3j_A | 236 | Double-stranded RNA-specific editase 1; editing, d | 96.87 | |
| 1uil_A | 113 | Double-stranded RNA-binding motif; structural geno | 96.42 | |
| 1whq_A | 99 | RNA helicase A; double-stranded RNA binding domain | 96.28 | |
| 3adg_A | 73 | F21M12.9 protein; HYL1, miRNA processing mechanism | 96.11 | |
| 2b7v_A | 71 | Double-stranded RNA-specific editase 1; RNA editin | 95.96 | |
| 2l2n_A | 103 | Hyponastic leave 1; DSRBD, miRNA, RNA binding prot | 95.8 | |
| 2yt4_A | 232 | Protein DGCR8; DSRBD, RNA binding domain, RNA bind | 95.63 | |
| 1di2_A | 69 | XLRBPA, double stranded RNA binding protein A; pro | 95.58 | |
| 3adj_A | 76 | F21M12.9 protein; HYL1, miRNA processing, RNA bind | 95.56 | |
| 2dix_A | 84 | Interferon-inducible double stranded RNA- dependen | 95.16 | |
| 3adl_A | 88 | RISC-loading complex subunit tarbp2; TRBP2, miRNA | 95.06 | |
| 3llh_A | 90 | RISC-loading complex subunit tarbp2; DSRBD, DSRM, | 94.91 | |
| 2cpn_A | 89 | TAR RNA-binding protein 2; double-stranded RNA bin | 94.7 | |
| 2b7t_A | 73 | Double-stranded RNA-specific editase 1; RNA editin | 94.63 | |
| 2ljh_A | 114 | Double-stranded RNA-specific editase ADAR; DSRBD, | 94.61 | |
| 1uhz_A | 89 | Staufen (RNA binding protein) homolog 2; DSRM, sta | 94.53 | |
| 2khx_A | 85 | Ribonuclease 3; drosha, RNA binding domain, hydrol | 94.41 | |
| 1x47_A | 98 | DGCR8 protein; structural genomics, DSRM domain, N | 93.99 | |
| 3p1x_A | 75 | Interleukin enhancer-binding factor 3; structural | 93.99 | |
| 1x49_A | 97 | Interferon-induced, double-stranded RNA- activated | 93.83 | |
| 1ekz_A | 76 | DSRBDIII, maternal effect protein (staufen); struc | 93.6 | |
| 2dmy_A | 97 | Spermatid perinuclear RNA-binding protein; DSRM do | 92.65 | |
| 3ho1_A | 685 | Argonaute; argonaute, protein-DNA-RNA complex, nuc | 92.51 | |
| 1whn_A | 128 | Hypothetical protein riken cDNA 2310016K04; double | 92.42 | |
| 4f1n_A | 1046 | Kpago; argonaute, RNAI, RNAse H, RNA binding prote | 92.19 | |
| 2l33_A | 91 | Interleukin enhancer-binding factor 3; structural | 91.84 | |
| 1r6z_P | 509 | Chimera of maltose-binding periplasmic protein AN | 90.83 | |
| 1x48_A | 88 | Interferon-induced, double-stranded RNA- activated | 90.19 |
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-85 Score=817.40 Aligned_cols=599 Identities=19% Similarity=0.228 Sum_probs=420.0
Q ss_pred CCceeEEecCCCCCCCCcceeecCcEEEEEEE-EcCcceecCHHHHHHHHHHHHHHHHHHhh-----ccc--ccee----
Q psy15484 176 PQGLAILTTKYIPKVCSFPIFTRCGEVEVSIE-LIDKNVVLSEENLSNTLIFMDYLFTKVLK-----LKK--YLML---- 243 (1233)
Q Consensus 176 ~~~fglLt~k~LP~ip~FpLf~~~g~~~V~l~-~~~~~i~lt~eql~~l~~Fh~~lF~dVl~-----l~k--~~~~---- 243 (1233)
+..+.||++++||.+|+|+||+++|.+.|++. +++..+.|+++|++.+++||.+||++|++ ++| ..+.
T Consensus 18 ~~~~~~l~~~~l~~~~~f~~~~~~g~~~v~v~~~~~~~~~l~~~q~~~~~~Fq~~lf~~~l~~~~~~~~~~~~~~~~~~~ 97 (756)
T 2qvw_A 18 PSHWLLLLDTHLGTLPGFKVSAGRGLPAAEVYFEAGPRVSLSRTDATIVAVYQSILFQLLGPTFPASWTEIGATMPHNEY 97 (756)
T ss_dssp EEEEEEEESSCCCSCCCEEECSBTTBCCEEEECCBCCCCCCCHHHHHHHHHHHHHHHHHHCTTSCSCHHHHHHTCCGGGS
T ss_pred cceeeeeecCCCCCCCCceeecCCCceeEEEEeecCCccccCHHHHHHHHHHHHHHHHHHhcccchhhhhcccccccccc
Confidence 35689999999999999999999999999999 89987799999999999999999999988 233 2222
Q ss_pred ----cCCCCCCC-cEEEeeecCCCCCceechhhhhhhhhccCCccCCChhhhhhcCccCcccccCcEEeccccCCCCCeE
Q psy15484 244 ----FDPNCSEN-SYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTY 318 (1233)
Q Consensus 244 ----fd~~~~~~-~YllvPl~~~~~~~~IDW~~v~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~VV~p~Y~n~d~~~~ 318 (1233)
|.++.+.. .|||||+... ...|||+.|......+...+..+ ...+.+.+..++++|+||+|.||| .++
T Consensus 98 ~~~~~~~~~~~~~~Yll~Pl~~~--~~~iDw~~v~~s~~~~~~~~~~~--~~~~d~~~~~~~l~g~vV~t~ynn---~r~ 170 (756)
T 2qvw_A 98 TFPRFISNPPQFATLAFLPLLSP--TSPLDLRALMVTAQLMCDAKRLS--DEYTDYSTLSASLHGRMVATPEIS---WSL 170 (756)
T ss_dssp SSTTCCCCCSCCCCEEEEEESST--TCCCCSHHHHHHHHHHHTCCCGG--GC------CTTTSTTCEEEETTTT---TEE
T ss_pred ccccccCCCcccceEEEEeCCCC--CCceehhhhhhhhhhccccCCCc--cccccchhhHHHhCCCEEecCCCC---ceE
Confidence 34555565 8999999742 34499999965322100001000 112334567889999999999976 378
Q ss_pred EEEEeecCCCCCCCCCCCCCCCccCHHHHHHhhhCccccCCCCceEEecccccccccccccccccccccccCCcHHHHHh
Q psy15484 319 FYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRRE 398 (1233)
Q Consensus 319 Y~V~~V~~dltP~S~Fp~~~~~~~Ty~eYy~~kygi~i~~~~QPLL~v~~~s~r~NlL~~r~~~~~g~~~~~~s~~~~~~ 398 (1233)
|+|++|++|+||.|+||.+. .+.||+|||+++||++|.+.+||||.++++. |+++++...++ .
T Consensus 171 Y~i~~id~d~~P~S~F~~~~-~~~Ty~dYYk~ky~i~I~d~~QPLL~~~~~~---~~~~~r~~~~~-------------~ 233 (756)
T 2qvw_A 171 YVVLGIDSTQTSLSYFTRAN-ESITYMRYYATAHNIHLRAADLPLVAAVRLD---DLKDHQIPAPG-------------S 233 (756)
T ss_dssp EEEEEEEEEEETTSEEEETT-EEEEHHHHHHHTTCCCCSCTTSEEEEEEETT---TTTTCCCCSTT-------------C
T ss_pred EEEEEecCCCCCCCcCCCCC-CCCCHHHHHHHHcCcccccCCCCeEEEEecc---ccccccccccc-------------c
Confidence 88999999999999999753 7899999999999999999999999999985 44544432111 0
Q ss_pred hhhcCCccEEEcccccccccCcHHHHH--HHHhhhHHHHHHHHHHHHHH-HHHHHHhhhcCCcccccccCCCCCCccchh
Q psy15484 399 IRESLGKKQLLVPELCLIHPFPASLWR--KSVSLPSILYRLNALLLADE-IRTAVASEIGLGKVILDEKVEWPPFNFGWK 475 (1233)
Q Consensus 399 ~~~~~~~~~~LvPELC~i~~ipas~w~--~a~~LPSIl~Ri~~lLlA~e-lr~~i~~~~~lg~~~~~~~~~~~~l~~~~~ 475 (1233)
..+..+..++||||||.++|+|+++|+ +++||||||||||+||+|.+ |+. .||+. +|
T Consensus 234 ~~~~~~~~v~L~PELC~vt~Lp~sl~~~~~~~~lPsil~rie~ll~a~~al~~-----------------~~p~~--~~- 293 (756)
T 2qvw_A 234 WDDLAPKLRFLPPELCLLLPDEFDLIRVQALQFLPEIAKHICDIQNTICALDK-----------------SFPDC--GR- 293 (756)
T ss_dssp -CCSCSSCEEECTTTCEECCTTSCTTHHHHHTTHHHHHHHHHHHHHHHHHHGG-----------------GSCCC--SC-
T ss_pred cccCCccceeeCHHHheeecCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-----------------cCCcc--cc-
Confidence 112235579999999999999999999 99999999999999999987 421 01100 00
Q ss_pred hhhhhhccCCCccccccccccccccCCcccccccchhhhhchhhhhhccccccccCcCCCccchhhhhhhhccccccccc
Q psy15484 476 MKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCDSGNEQENEDEEKLDKIKSDENKTE 555 (1233)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 555 (1233)
T Consensus 294 -------------------------------------------------------------------------------- 293 (756)
T 2qvw_A 294 -------------------------------------------------------------------------------- 293 (756)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCceeccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhhhHHHhhccccchhhhhcch
Q psy15484 556 SQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSDDEDSNDDLSSVDFDVEDDFRENEKEDTLQIQFKGKYSAEAICEGE 635 (1233)
Q Consensus 556 ~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~d~~~~~~~~~~~~~~~~~~~~ea~~~~~ 635 (1233)
| ...++||||+..
T Consensus 294 ---------i----------------------------------------------------------~~~~leAlT~~~ 306 (756)
T 2qvw_A 294 ---------I----------------------------------------------------------GGERYFAITAGL 306 (756)
T ss_dssp ---------C----------------------------------------------------------HHHHHHHHHHHH
T ss_pred ---------c----------------------------------------------------------CHHHHHHHhhhh
Confidence 0 002345555321
Q ss_pred hhhhhhhhhhcccccchhhhhhccccchhhHHHHhhhchhhhhhhhhhhhhccccccccccCCccccccccccCCCCCCC
Q psy15484 636 EESALKIQDWIESNFFWEEIDVNHINSKAEFVKVIQDKLTFYEGQLELIKNRIDVENTIKENQPVHIVRQSFDNASNPSK 715 (1233)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1233)
-. + +++ ...+ ..+. . +.
T Consensus 307 ~~-------------------------------------~--~g~----~~~~-----~~~~-------~---Al----- 323 (756)
T 2qvw_A 307 RL-------------------------------------D--QGR----GRGL-----AGWR-------T---PF----- 323 (756)
T ss_dssp BC-------------------------------------S--CCB----TTBS-----BTTE-------E---EC-----
T ss_pred hh-------------------------------------h--hcc----ccch-----hhhh-------h---hc-----
Confidence 00 0 000 0000 0000 0 00
Q ss_pred cchhHHHHHHhhhccccCCcccccccCCCCCCCCCcccCcccCCCCCCCCcccCCCCCcCCCCCCCcchhhhhhHHHHHH
Q psy15484 716 NTAILTEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYA 795 (1233)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ERLE~LGDsfLK~~ 795 (1233)
.+ ++ .....|||||||||||||+++
T Consensus 324 ----------------------------Th-------------------~s--------~~~~~nnERLEfLGDavL~~~ 348 (756)
T 2qvw_A 324 ----------------------------GP-------------------FG--------VSHTDVFQRLELLGDAVLGFI 348 (756)
T ss_dssp ----------------------------BG-------------------GG--------BCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------cc-------------------cc--------ccCCCCcHHHHHHHHHHHHHH
Confidence 00 00 011358999999999999999
Q ss_pred HHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccchhhhHHHHHhcCCCCcccc
Q psy15484 796 ITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWN 875 (1233)
Q Consensus 796 vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~~~~~~~~~~~~~~~~~~~ 875 (1233)
||.|||.+||+.+||+||.+|+.+|||.+|+++|+++||++||+.++++. ..|.. ....+|..+ +.- |-
T Consensus 349 vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~~~~e~----~~~~i-laD~~EAli-GAi-----yl 417 (756)
T 2qvw_A 349 VTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNNLV----AKSKT-WADMYEEIV-GSI-----FT 417 (756)
T ss_dssp HHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCCSCC------CCCC-HHHHHHHHH-HHH-----HH
T ss_pred HHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHhccCCCCC----CcccH-HHhHHHHHh-Ccc-----cc
Confidence 99999999999999999999999999999999999999999999888763 11111 111122221 110 00
Q ss_pred ccCCCCcccCChhHHHHHhhhccccccccccccccccccc--------cccccccCCCchhHHHHHHHHHH-----HHhc
Q psy15484 876 CLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPY--------NLVTQHSIPDKSIADCVEALIGA-----YLIE 942 (1233)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--------~~~~~~~l~dK~iADvvEALIGA-----~~l~ 942 (1233)
. |. . -+....+...-- ......... ...-++++..|.+||++||++|+ |++.
T Consensus 418 D---~~--G--~~~a~~~v~~~~--------~~~~~~~~~~~~~~Dp~Kt~LqE~~q~~~ia~~v~~~~~~ak~~~~~~~ 482 (756)
T 2qvw_A 418 G---PN--G--IYGCEEFLAKTL--------MSPEHSKTVGSACPDAVTKASKRVCMGEAGAHEFRSLVDYACEQGISVF 482 (756)
T ss_dssp S---TT--H--HHHHHHHHHHHH--------BCGGGSCC---CCCHHHHHHHHHHHTSCCCHHHHHHHHHHTTTTTCCCB
T ss_pred c---cc--C--hHHHHHHHHHHH--------HhhhhcccccccccCchHHHHHHHHhccchhhhhhhhhhHHhhhccccc
Confidence 0 00 0 000111111000 000001110 01123456678889999999998 6788
Q ss_pred CChhHHHHH------------HHHhcccccCCC----CCC--------------------------------------C-
Q psy15484 943 CGPRGALLF------------MSWLGLKVIPPV----TNP--------------------------------------E- 967 (1233)
Q Consensus 943 ~G~~~a~~~------------l~wlgi~~~~~~----~~p--------------------------------------~- 967 (1233)
||.++|..+ ++|+|+.+.+.. ..| +
T Consensus 483 ~~~~aa~~aL~~l~~~~~~~f~~w~g~~~~~~~~~~~~~~~~~ks~~d~~~al~~g~~l~~~g~~~~~~~~~~~~~~~~~ 562 (756)
T 2qvw_A 483 CSSRVSTMFLERLRDIPAEDMLDWYRLGIQFSHRSGLSGPGGVVSVIDIMTHLARGLWLGSPGFYVEQQTDKNESACPPT 562 (756)
T ss_dssp SSSHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTSSCSSCCSCHHHHHHHHHHHHHHHCCEEECCC---------CCE
T ss_pred hhhHHHHHHHHhhcccchHhHHhhcCCccccccccccccccccchhhhHHHHhhcCceeccccccccccccccccccccC
Confidence 888876554 478775532100 000 0
Q ss_pred ------------Chhhh--------HHH-HhhHHHHHHHcCCccCC--------------------------HhHHHhhc
Q psy15484 968 ------------SKHLS--------DVL-LDGFDKFEESINYRFKD--------------------------KSYLLQAM 1000 (1233)
Q Consensus 968 ------------~~~~~--------~~~-~~~~~~le~~LgY~Fk~--------------------------~~LL~~Al 1000 (1233)
.+.+. ..+ ...+..+|++|||+|+| +.||.+||
T Consensus 563 ~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~lE~~lgY~F~~~~~~~~~~~L~~~~l~~i~~~~~~~~~~LL~~Al 642 (756)
T 2qvw_A 563 IPVLYIYHRSVQCPVLYGSLTETPTGPVASKVLALYEKILAYESSGGSKHIAAQTVSRSLAVPIPSGTIPFLIRLLQIAL 642 (756)
T ss_dssp EECCTTTTSSSCCTTTTCCCC---CTTTHHHHHHHHHHHHSSCCCCSSHHHHHHHHHHTTCSCCCSSCHHHHHHHHHHHH
T ss_pred CchhhhhcccccCccccccccccccchhhhhHHHHHHHHhCCCccCcchhhhHhhhhhhhccccccccccccHHHHHHHh
Confidence 00000 000 11367899999999999 89999999
Q ss_pred ccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChHHHHHHHHHcC--cchhhhhcCcch
Q psy15484 1001 THASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLG--FHHFFKHLSPGL 1078 (1233)
Q Consensus 1001 TH~Sy~~~~~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~~La~iA~~lg--L~~~l~~~s~~l 1078 (1233)
||+| ||||||||||||+++|++|||.+||++++|.||.+|+++|||++||.+|+++| |++||+....
T Consensus 643 TH~S---------neRLEfLGDaVL~l~vs~~L~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg~~L~~~l~~~~~-- 711 (756)
T 2qvw_A 643 TPHV---------YQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESHP-- 711 (756)
T ss_dssp STGG---------GHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSCTHHHHHHHHHST--
T ss_pred cCcc---------chHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHhCChHHHHHHHHhcccHHHHHhcCch--
Confidence 9999 89999999999999999999999999999999999999999999999999999 9999973211
Q ss_pred HHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchhchhhccccchhhcCCCCHHHHHHHHHHHHHHHHH
Q psy15484 1079 HEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIE 1154 (1233)
Q Consensus 1079 ~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylDsG~dl~~v~~~i~~ll~p~i~ 1154 (1233)
+ ....+|++||+|||+|||||+|+|+ ++|++|+.+++.|.++
T Consensus 712 --------------------------e------~~~~~kilaD~~EAliGAiylD~G~--~~a~~~v~~~~~~~l~ 753 (756)
T 2qvw_A 712 --------------------------K------IQPDSKVYGDTFEAILAAILLACGE--EAAGAFVREHVLPQVV 753 (756)
T ss_dssp --------------------------T------CCTTCSHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHTGGGCC
T ss_pred --------------------------h------hcCCccHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhh
Confidence 1 1267899999999999999999996 8999999999887654
|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A | Back alignment and structure |
|---|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A | Back alignment and structure |
|---|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 | Back alignment and structure |
|---|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
| >3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* | Back alignment and structure |
|---|
| >3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
| >2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A | Back alignment and structure |
|---|
| >3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* | Back alignment and structure |
|---|
| >3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A | Back alignment and structure |
|---|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* | Back alignment and structure |
|---|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A | Back alignment and structure |
|---|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 | Back alignment and structure |
|---|
| >1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1 | Back alignment and structure |
|---|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A | Back alignment and structure |
|---|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1 | Back alignment and structure |
|---|
| >2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp} | Back alignment and structure |
|---|
| >2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp} | Back alignment and structure |
|---|
| >1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} | Back alignment and structure |
|---|
| >2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A | Back alignment and structure |
|---|
| >2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A | Back alignment and structure |
|---|
| >1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A | Back alignment and structure |
|---|
| >1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A | Back alignment and structure |
|---|
| >3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A | Back alignment and structure |
|---|
| >1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B | Back alignment and structure |
|---|
| >1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A | Back alignment and structure |
|---|
| >1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B | Back alignment and structure |
|---|
| >2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A | Back alignment and structure |
|---|
| >4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A | Back alignment and structure |
|---|
| >2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 | Back alignment and structure |
|---|
| >2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
| >1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A | Back alignment and structure |
|---|
| >1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 | Back alignment and structure |
|---|
| >2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
| >1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A | Back alignment and structure |
|---|
| >1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A | Back alignment and structure |
|---|
| >3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A | Back alignment and structure |
|---|
| >2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B | Back alignment and structure |
|---|
| >2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A | Back alignment and structure |
|---|
| >2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} | Back alignment and structure |
|---|
| >2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A | Back alignment and structure |
|---|
| >2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A | Back alignment and structure |
|---|
| >2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A | Back alignment and structure |
|---|
| >1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
| >2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 | Back alignment and structure |
|---|
| >1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1233 | ||||
| d2nuga1 | 148 | a.149.1.1 (A:3-150) RNase III endonuclease catalyt | 2e-19 | |
| d1o0wa1 | 169 | a.149.1.1 (A:-1-167) RNase III endonuclease cataly | 4e-18 | |
| d1u61a_ | 127 | a.149.1.1 (A:) Hypothetical protein BC0111 {Bacill | 3e-13 | |
| d1u61a_ | 127 | a.149.1.1 (A:) Hypothetical protein BC0111 {Bacill | 8e-04 | |
| d1si2a_ | 126 | b.34.14.1 (A:) Eukaryotic translation initiation f | 5e-04 |
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Length = 148 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Score = 84.1 bits (207), Expect = 2e-19
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 39/175 (22%)
Query: 980 DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
++ E+ + Y FKDKS L +A+TH SY + + Y+ LEFLGDA++++ I L +
Sbjct: 3 EQLEKKLGYTFKDKSLLEKALTHVSY---SKKEHYETLEFLGDALVNFFIVDLLVQYSPN 59
Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE 1099
G L+ L++ L++ F LA +L H F + ++E I
Sbjct: 60 KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETII---------------- 103
Query: 1100 YYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIE 1154
GD+FE++ A+Y+DSG + +++Y++ K +I
Sbjct: 104 --------------------GDVFEALWAAVYIDSGRDANFTRELFYKLFKEDIL 138
|
| >d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 169 | Back information, alignment and structure |
|---|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127 | Back information, alignment and structure |
|---|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127 | Back information, alignment and structure |
|---|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1233 | |||
| d2nuga1 | 148 | RNase III endonuclease catalytic domain {Aquifex a | 99.97 | |
| d1o0wa1 | 169 | RNase III endonuclease catalytic domain {Thermotog | 99.97 | |
| d1o0wa1 | 169 | RNase III endonuclease catalytic domain {Thermotog | 99.81 | |
| d2nuga1 | 148 | RNase III endonuclease catalytic domain {Aquifex a | 99.79 | |
| d1u61a_ | 127 | Hypothetical protein BC0111 {Bacillus cereus [TaxI | 99.75 | |
| d1u61a_ | 127 | Hypothetical protein BC0111 {Bacillus cereus [TaxI | 99.72 | |
| d1u04a1 | 322 | Argonaute homologue PF0537 {Pyrococcus furiosus [T | 98.96 | |
| d1si2a_ | 126 | Eukaryotic translation initiation factor 2C 1, EIF | 98.54 | |
| d1x48a1 | 76 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 98.41 | |
| d1o0wa2 | 69 | RNase III, C-terminal domain {Thermotoga maritima | 98.27 | |
| d1x47a1 | 85 | Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | 98.26 | |
| d1qu6a2 | 89 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 98.26 | |
| d2b7ta1 | 73 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 98.26 | |
| d2b7va1 | 71 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 98.23 | |
| d1x49a1 | 85 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 98.18 | |
| d2cpna1 | 76 | TAR RNA-binding protein 2 {Human (Homo sapiens) [T | 98.16 | |
| d1qu6a1 | 90 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 98.15 | |
| d2dixa1 | 73 | Interferon-inducible double stranded RNA-dependent | 98.14 | |
| d2nuga2 | 68 | RNase III, C-terminal domain {Aquifex aeolicus [Ta | 98.12 | |
| d1di2a_ | 69 | Double-stranded RNA-binding protein A, second dsRB | 98.09 | |
| d2dmya1 | 84 | Spermatid perinuclear RNA-binding protein {Human ( | 98.07 | |
| d1uhza_ | 89 | staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10 | 98.04 | |
| d1ekza_ | 76 | Staufen, domain III {Fruit fly (Drosophila melanog | 97.98 | |
| d1whqa_ | 99 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 97.91 | |
| d1whna_ | 128 | tRNA-dihydrouridine synthase 2-like, Dus2l (231001 | 97.8 | |
| d1uila_ | 113 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 97.76 | |
| d1t4oa_ | 81 | RNase III, C-terminal domain {Baker's yeast (Sacch | 97.74 | |
| d1uila_ | 113 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 97.55 | |
| d1whqa_ | 99 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 97.17 | |
| d1x47a1 | 85 | Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | 96.75 | |
| d1x48a1 | 76 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 96.44 | |
| d1qu6a2 | 89 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 96.38 | |
| d2dixa1 | 73 | Interferon-inducible double stranded RNA-dependent | 96.23 | |
| d2b7va1 | 71 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 96.1 | |
| d1x49a1 | 85 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 96.09 | |
| d2cpna1 | 76 | TAR RNA-binding protein 2 {Human (Homo sapiens) [T | 96.02 | |
| d1whna_ | 128 | tRNA-dihydrouridine synthase 2-like, Dus2l (231001 | 95.91 | |
| d1di2a_ | 69 | Double-stranded RNA-binding protein A, second dsRB | 95.8 | |
| d1t2sa_ | 123 | Argonaute 2 {Fruit fly (Drosophila melanogaster) [ | 95.57 | |
| d1qu6a1 | 90 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 95.52 | |
| d1ekza_ | 76 | Staufen, domain III {Fruit fly (Drosophila melanog | 95.48 | |
| d1uhza_ | 89 | staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10 | 95.03 | |
| d2nuga2 | 68 | RNase III, C-terminal domain {Aquifex aeolicus [Ta | 94.71 | |
| d2b7ta1 | 73 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 94.35 | |
| d1o0wa2 | 69 | RNase III, C-terminal domain {Thermotoga maritima | 93.44 | |
| d2dmya1 | 84 | Spermatid perinuclear RNA-binding protein {Human ( | 93.34 | |
| d1t4oa_ | 81 | RNase III, C-terminal domain {Baker's yeast (Sacch | 86.46 |
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.97 E-value=1.1e-32 Score=279.49 Aligned_cols=139 Identities=32% Similarity=0.597 Sum_probs=128.1
Q ss_pred HHHHHHHcCCccCCHhHHHhhcccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChHHH
Q psy15484 979 FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIF 1058 (1233)
Q Consensus 979 ~~~le~~LgY~Fk~~~LL~~AlTH~Sy~~~~~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~~L 1058 (1233)
++.||++|||+|+|+.||.+||||+||.. ..+|||||||||+||+++++.|||.+||+.++|.||.+|+++|||++|
T Consensus 2 l~~le~~igy~F~n~~LL~~Alth~S~~~---~~~~erLeflGDavl~~~v~~~l~~~~p~~~~g~lt~~r~~lvsn~~L 78 (148)
T d2nuga1 2 LEQLEKKLGYTFKDKSLLEKALTHVSYSK---KEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFF 78 (148)
T ss_dssp HHHHHHHHTCCCSSHHHHHHHHBCTTTCS---SSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHCCccCCHHHHHHHhcCcCcCC---CcchHHHHHHHHHHHhhhhHHHHHhhCCCcchHHHHHHHHHhhhhhHh
Confidence 57899999999999999999999999974 468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcchhhhhcCcchHHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchhchhhccccchhhcCCCCH
Q psy15484 1059 ASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138 (1233)
Q Consensus 1059 a~iA~~lgL~~~l~~~s~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylDsG~dl 1138 (1233)
|.+|.++||++|++... ....+|++||+|||+|||||+|+|+++
T Consensus 79 a~~a~~lgl~~~i~~~~------------------------------------~~~~~kilad~~EAiiGAiylD~g~~~ 122 (148)
T d2nuga1 79 NLLAQKLELHKFIRIKR------------------------------------GKINETIIGDVFEALWAAVYIDSGRDA 122 (148)
T ss_dssp HHHHHTTTGGGTCBSCT------------------------------------TCCCHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred hhHHHHhhHHHHHHhcc------------------------------------ccchhhhhHHHHHHHHHHhhhccCCCH
Confidence 99999999999997311 134579999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy15484 1139 DTVWKVYYEIMKSEIERL 1156 (1233)
Q Consensus 1139 ~~v~~~i~~ll~p~i~~~ 1156 (1233)
..|++||.+++.|.+...
T Consensus 123 ~~~~~~i~~l~~~~i~~~ 140 (148)
T d2nuga1 123 NFTRELFYKLFKEDILSA 140 (148)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999988754
|
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
| >d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
| >d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
| >d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|