Psyllid ID: psy15551

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640
Protein Sequence
MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVKFRELNSLDEKVSTENIEKCVTYFNTFYPVLFPDTKFSHVGHLLMDYVKILSTASDCLQTDSKIIQALIQETMMPCECYSLFLHSYGNEIGREGSTENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQTDSKIIQALIQR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEkscdgagdgtevSHYQIKQLEQQNMRLRETLVRLRDLSAHeifnnnkfdsrlrdlSAHEifnnnkfdsrlrdLSAHEifnnnkfdsrlydlsaheifnnknkfdsrlrdlsaheifnnknkfdsrlrdlsaheifnnnkfdsrlrdlsaheifnnknkfdsrlRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVKFRELnsldekvstENIEKCVTYFNTfypvlfpdtkfshvGHLLMDYVKILSTASDCLQTDSKIIQALIQETMMPCECYSLFLHSYGneigregstenIEKCVTYFNTfypvlfpghpsfsscgSLLMDYVKILSTACDCLQTDSKIIQALIQR
Flexible Loop (DISEMBL)
mkaeiqdlkekldtmkikyrektrdldemKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKqeaveakedtadlVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAheifnnnkfdsrlrDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEifnnknkfdsrlRDLSAHEIFNNNKFDSRLRDLSAHeifnnknkfdsrLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAalesladreltivkFRELVIREKEAalesladreltivkfrelnsldekvsteNIEKCVTYFNTFYPVLFPDTKFSHVGHLLMDYVKILSTASDCLQTDSKIIQALIQETMMPCECYSLFLHSYGNEIGREGSTENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQTDSKIIQALIQR
Low Complexity Region (SEG)
MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKReleklkqekqeaveakeDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQedakeieielkeeveMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVKFRELNSLDEKVSTENIEKCVTYFNTFYPVLFPDTKFSHVGHLLMDYVKILSTASDCLQTDSKIIQALIQETMMPCECYSLFLHSYGNEIGREGSTENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQTDSKIIQALIQR
Disordered region (IsUnstruct)
************************************************************************************************************************************VELDLAKEKIEELTLDIELMKADIEKSCDGA***TEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKNKF***LRDLSAHEIFNNN*F********************************************************************CADLH*QVDAALGA**MVQQLSVQKLELEDLVSKQAEEIVDLEALQVV************************************LESLADRELTIVKFRELVIREKEAALESLADRELTIVKFRELNSLDEKVSTENIEKCVTYFNTFYPVLFPDTKFSHVGHLLMDYVKILSTASDCLQTDSKIIQALIQETMMPCECYSLFLHSYGNEIGREGSTENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQTDSKIIQAL***
Disordered Region (DISOPRED)
*KAEIQDLK**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************ILS***D****************************************ENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQTDSKIIQALIQ*
Disordered Region (DISEMBL)
MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKL***********EDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSA*********QKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVKFRELNSLDEKVSTENIEKCVTYFNTFYPVLFPDTKFSHVGHLLMDYVKILSTASDCLQTDSKIIQALIQETMMPCECYSLFLHSYGNEIGREGSTENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQTDSKIIQALIQR
Disordered Region (DISPRO)
MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSC*********SHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVKFRELNSLDEKVSTENIEKCVTYFNTFYPVLFPDTKFSHVGHLLMDYVKILSTASDCLQTDSKIIQALIQETMMPCECYSLFLHSYGNEIGREGSTENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQTDSKIIQALIQR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKAExxxxxxxxxxxxxxxxxxxxxxxxxxxxLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIEKSCDGAGDGTEVSHYQxxxxxxxxxxxxxxxxxxxxxSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVDAALGAEEMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVKFRELNSLDEKVSTENIEKCVTYFNTFYPVLFPDTKFSHVGHLLMDYVKILSTASDCLQTDSKIIQALIQETMMPCECYSLFLHSYGNEIGREGSTENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQTDSKIIQALIQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	640	2.2.26 [Sep-21-2011]
P35458	1224	Dynactin subunit 1 OS=Gal	yes	N/A	0.25	0.130	0.443	2e-32
P13496	1265	Dynactin subunit 1 OS=Dro	yes	N/A	0.301	0.152	0.470	8e-32
Q14203	1278	Dynactin subunit 1 OS=Hom	yes	N/A	0.25	0.125	0.433	9e-32
O08788	1281	Dynactin subunit 1 OS=Mus	yes	N/A	0.245	0.122	0.412	2e-29
P28023	1280	Dynactin subunit 1 OS=Rat	yes	N/A	0.243	0.121	0.412	3e-27
Q6PCJ1	1232	Dynactin subunit 1 OS=Xen	N/A	N/A	0.25	0.129	0.433	1e-25
Q01397	1367	Dynactin, 150 kDa isoform	N/A	N/A	0.231	0.108	0.353	4e-10

>sp|P35458|DCTN1_CHICK Dynactin subunit 1 OS=Gallus gallus GN=DCTN1 PE=2 SV=2

 Score =  141 bits (355), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/203 (44%), Positives = 132/203 (65%), Gaps = 43/203 (21%)

Query: 1   MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
           ++++++DL+EKL+T+KIK     R+ D+ K+                            +
Sbjct: 213 LRSQVRDLEEKLETLKIK-----RNEDKAKL----------------------------K 239

Query: 61  DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEM 116
           +L++ KIQL+Q  E+K+K+ E QA L+R L++ K+E ++A+EAKE    + AD  + +EM
Sbjct: 240 ELEKYKIQLEQVQEWKSKMQEQQADLQRRLKEAKKEAKDALEAKERYMEEMADTADAIEM 299

Query: 117 MTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADI-EKSCDGAGDGTEVSHYQIK 175
            TLDKEMAEERAE+LQ E+D  KEK+E LT+D+E++K +I EK  DGA      S YQ+K
Sbjct: 300 ATLDKEMAEERAESLQQEVDSLKEKVEYLTMDLEILKHEIEEKGSDGA-----ASSYQVK 354

Query: 176 QLEQQNMRLRETLVRLRDLSAHE 198
           QLE+QN RL+E LVR+RDLSA E
Sbjct: 355 QLEEQNARLKEALVRMRDLSASE 377

Dynactin is a major component of activator I, a 20S polypeptide complex that stimulates dynein-mediated vesicle transport.
Gallus gallus (taxid: 9031)

>sp|P13496|DCTN1_DROME Dynactin subunit 1 OS=Drosophila melanogaster GN=Gl PE=1 SV=2

 Score =  139 bits (350), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 96/204 (47%), Positives = 140/204 (68%), Gaps = 11/204 (5%)

Query: 319 RLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALG 378
           RLRDLSAH+KH++ KL K++E K+ E  EL +++EKL  ++ ELEA  ADL EQVDAALG
Sbjct: 399 RLRDLSAHDKHDIQKLSKELEMKRSEVTELERTKEKLSAKIDELEAIVADLQEQVDAALG 458

Query: 379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSA 438
           AEEMV+QL+ +K+ELED V    EEI  LEAL+ V +QL E   E+E++L+EE+++A  A
Sbjct: 459 AEEMVEQLAEKKMELEDKVKLLEEEIAQLEALEEVHEQLVESNHELELDLREELDLANGA 518

Query: 439 TREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVKFRELNSLDEKV 498
            +EV+RE++AA+E++ DR+ TIVKFRELV        + L D+   + + R+ NS +EK 
Sbjct: 519 KKEVLRERDAAIETIYDRDQTIVKFRELV--------QKLNDQ---LTELRDRNSSNEKE 567

Query: 499 STENIEKCVTYFNTFYPVLFPDTK 522
           S ++    +      Y  +F ++K
Sbjct: 568 SLQDPSLKMVTETIDYKQMFAESK 591

Required for the cytoplasmic dynein-driven retrograde movement of vesicles and organelles along microtubules. Dynein-dynactin interaction is a key component of the mechanism of axonal transport of vesicles and organelles.

Drosophila melanogaster (taxid: 7227)

>sp|Q14203|DCTN1_HUMAN Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 SV=3

 Score =  139 bits (349), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 88/203 (43%), Positives = 133/203 (65%), Gaps = 43/203 (21%)

Query: 1   MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
           ++A+++DL+EKL+T+++K                  AE KAK+                +
Sbjct: 220 LRAQVRDLEEKLETLRLKR-----------------AEDKAKL----------------K 246

Query: 61  DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEM 116
           +L++ KIQL+Q  E+K+K+ E QA L+R L++ ++E +EA+EAKE    + AD  + +EM
Sbjct: 247 ELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMADTADAIEM 306

Query: 117 MTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADI-EKSCDGAGDGTEVSHYQIK 175
            TLDKEMAEERAE+LQ E++  KE+++ELT D+E++KA+I EK  DGA      S YQ+K
Sbjct: 307 ATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGA-----ASSYQLK 361

Query: 176 QLEQQNMRLRETLVRLRDLSAHE 198
           QLE+QN RL++ LVR+RDLS+ E
Sbjct: 362 QLEEQNARLKDALVRMRDLSSSE 384

Required for the cytoplasmic dynein-driven retrograde movement of vesicles and organelles along microtubules. Dynein-dynactin interaction is a key component of the mechanism of axonal transport of vesicles and organelles.

Homo sapiens (taxid: 9606)

>sp|O08788|DCTN1_MOUSE Dynactin subunit 1 OS=Mus musculus GN=Dctn1 PE=1 SV=3

 Score =  130 bits (328), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 129/206 (62%), Gaps = 49/206 (23%)

Query: 1   MKAEIQDLKEKLDTMKIKYRE---KTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYRE 57
           ++A+++DL+EKL+T+++K  E   K ++L++ KIQL+Q  E+K+K               
Sbjct: 220 LRAQVRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSK--------------- 264

Query: 58  KTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAK----EDTADLVET 113
                                + E QA L+R L++ ++E +EA+EAK    E+ AD  + 
Sbjct: 265 ---------------------MQEQQADLQRRLKEARKEAKEALEAKERYMEEMADTADA 303

Query: 114 LEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADI-EKSCDGAGDGTEVSHY 172
           +EM TLDKEMAEERAE+LQ E++  KE+++ELT D+E++KA+I EK  DGA      S Y
Sbjct: 304 IEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGA-----ASSY 358

Query: 173 QIKQLEQQNMRLRETLVRLRDLSAHE 198
           Q+KQLE+QN RL++ LVR+RDLS+ E
Sbjct: 359 QLKQLEEQNARLKDALVRMRDLSSSE 384

Required for the cytoplasmic dynein-driven retrograde movement of vesicles and organelles along microtubules. Dynein-dynactin interaction is a key component of the mechanism of axonal transport of vesicles and organelles.

Mus musculus (taxid: 10090)

>sp|P28023|DCTN1_RAT Dynactin subunit 1 OS=Rattus norvegicus GN=Dctn1 PE=2 SV=2

 Score =  124 bits (310), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 127/206 (61%), Gaps = 50/206 (24%)

Query: 1   MKAEIQDLKEKLDTMKIKYRE---KTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYRE 57
           ++ +++DL+EKL+T+++K  E   K ++L++ KIQL+Q  E+K+                
Sbjct: 220 LRDQVRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKS---------------- 263

Query: 58  KTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAK----EDTADLVET 113
                               K+ E QA L+R L++ K+ K EA+EAK    E+ AD  + 
Sbjct: 264 --------------------KMQEQQADLQRRLKEAKEAK-EALEAKERYMEEMADTADA 302

Query: 114 LEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADI-EKSCDGAGDGTEVSHY 172
           +EM TLDKEMAEERAE+LQ E++  KE+++ELT D+E++KA+I EK  DGA      S Y
Sbjct: 303 IEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGA-----ASSY 357

Query: 173 QIKQLEQQNMRLRETLVRLRDLSAHE 198
           Q+KQLE+QN RL++ LVR+RDLS+ E
Sbjct: 358 QLKQLEEQNARLKDALVRMRDLSSSE 383

Required for the cytoplasmic dynein-driven retrograde movement of vesicles and organelles along microtubules. Dynein-dynactin interaction is a key component of the mechanism of axonal transport of vesicles and organelles.

Rattus norvegicus (taxid: 10116)

>sp|Q6PCJ1|DCTN1_XENLA Dynactin subunit 1 OS=Xenopus laevis GN=dctn1 PE=2 SV=1

 Score =  118 bits (296), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/203 (43%), Positives = 132/203 (65%), Gaps = 43/203 (21%)

Query: 1   MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
           ++A+++DL+EKL+T+K+K                  AE KAK+                +
Sbjct: 178 LRAQVKDLEEKLETLKMK-----------------RAEDKAKL----------------K 204

Query: 61  DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAK----EDTADLVETLEM 116
           ++++ K+QL+Q  E+K+K+ E QA ++R+L++ K+E +EA+EAK    E+ AD  + +EM
Sbjct: 205 EMEKSKLQLEQVQEWKSKMQEQQADIQRQLKEAKKEAKEALEAKERYMEEMADTADAIEM 264

Query: 117 MTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADI-EKSCDGAGDGTEVSHYQIK 175
            TLDKEMAEERAE+LQ E+D  K+K+EE  +D+E++K +I EK  DGA      S YQ+K
Sbjct: 265 ATLDKEMAEERAESLQQEVDTLKDKVEEHKIDLEILKHEIEEKGSDGA-----ASSYQVK 319

Query: 176 QLEQQNMRLRETLVRLRDLSAHE 198
           QLE+QN RL+E LVR+RDLSA E
Sbjct: 320 QLEEQNARLKEALVRMRDLSASE 342

Required for the cytoplasmic dynein-driven retrograde movement of vesicles and organelles along microtubules. Dynein-dynactin interaction is a key component of the mechanism of axonal transport of vesicles and organelles.

Xenopus laevis (taxid: 8355)

>sp|Q01397|DYNA_NEUCR Dynactin, 150 kDa isoform OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ro-3 PE=3 SV=3

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 90/150 (60%), Gaps = 2/150 (1%)

Query: 319 RLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKL-KQRVTELEADCADLHEQVDAAL 377
           RLRD++  ++ E+    K +EE  +E  E IK Q    K+++ + EA   DL EQ++ AL
Sbjct: 486 RLRDITQQQEEELKDQIKSMEEDLRE-FETIKEQHTTAKEKLAQTEAIVEDLREQLNNAL 544

Query: 378 GAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARS 437
           GAEE+++ L+ Q +   + + +    I DLE+L+ ++D+L+ +  + E E++EE+++  S
Sbjct: 545 GAEEIIESLTEQTMNQSEEIKELRAVIDDLESLKEINDELEINHVQNEKEMQEEIDLKDS 604

Query: 438 ATREVIREKEAALESLADRELTIVKFRELV 467
              E  R+     ESL D E T+ +FRELV
Sbjct: 605 IIAEQFRQANLQRESLEDMEYTLSRFRELV 634

Required for the cytoplasmic dynein-driven retrograde movement of vesicles and organelles along microtubules. Dynein-dynactin interaction is a key component of the mechanism of axonal transport of vesicles and organelles.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	640
328711717	1337	PREDICTED: dynactin subunit 1-like isofo	0.223	0.106	0.627	4e-42
328711715	1287	PREDICTED: dynactin subunit 1-like isofo	0.223	0.111	0.627	5e-42
189240963	1206	PREDICTED: similar to dynactin [Triboliu	0.253	0.134	0.492	1e-38
357623688	1139	dynactin [Danaus plexippus]	0.256	0.143	0.483	2e-38
380016243	1282	PREDICTED: dynactin subunit 1-like [Apis	0.257	0.128	0.455	2e-37
328783650	1214	PREDICTED: dynactin subunit 1 [Apis mell	0.257	0.135	0.455	2e-37
383866227	1207	PREDICTED: dynactin subunit 1-like [Mega	0.257	0.136	0.455	8e-37
157112397	1217	dynactin [Aedes aegypti] gi|108878076|gb	0.223	0.117	0.559	3e-36
170034713	1251	150 kDa dynein-associated polypeptide [C	0.221	0.113	0.562	1e-35
195494201	1265	GE21986 [Drosophila yakuba] gi|194180837	0.240	0.121	0.503	3e-35

>gi|328711717|ref|XP_003244620.1| PREDICTED: dynactin subunit 1-like isoform 2 [Acyrthosiphon pisum]

 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 91/145 (62%), Positives = 120/145 (82%)

Query: 54  RYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVET 113
           R +EK+ D+D MK+QLDQ+AEFK KIMES + LK+ELEK+K EKQ+A+E K++  ++ ET
Sbjct: 301 RLKEKSHDIDMMKLQLDQAAEFKIKIMESHSALKKELEKVKMEKQDALEGKDEYNEMAET 360

Query: 114 LEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQ 173
           LEM TLDKEMAE +AETLQ+ELD AKE+IEELT+D+EL+KA+ EK  +    G   + ++
Sbjct: 361 LEMATLDKEMAEVKAETLQLELDQAKERIEELTVDLELLKAEFEKGNESEEGGDGANSFK 420

Query: 174 IKQLEQQNMRLRETLVRLRDLSAHE 198
           +KQLEQQN+RLR+TLV+LRDLSAHE
Sbjct: 421 VKQLEQQNLRLRDTLVKLRDLSAHE 445

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328711715|ref|XP_001944940.2| PREDICTED: dynactin subunit 1-like isoform 1 [Acyrthosiphon pisum]

 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 91/145 (62%), Positives = 120/145 (82%)

Query: 54  RYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVET 113
           R +EK+ D+D MK+QLDQ+AEFK KIMES + LK+ELEK+K EKQ+A+E K++  ++ ET
Sbjct: 251 RLKEKSHDIDMMKLQLDQAAEFKIKIMESHSALKKELEKVKMEKQDALEGKDEYNEMAET 310

Query: 114 LEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQ 173
           LEM TLDKEMAE +AETLQ+ELD AKE+IEELT+D+EL+KA+ EK  +    G   + ++
Sbjct: 311 LEMATLDKEMAEVKAETLQLELDQAKERIEELTVDLELLKAEFEKGNESEEGGDGANSFK 370

Query: 174 IKQLEQQNMRLRETLVRLRDLSAHE 198
           +KQLEQQN+RLR+TLV+LRDLSAHE
Sbjct: 371 VKQLEQQNLRLRDTLVKLRDLSAHE 395

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240963|ref|XP_972394.2| PREDICTED: similar to dynactin [Tribolium castaneum] gi|270013807|gb|EFA10255.1| hypothetical protein TcasGA2_TC012455 [Tribolium castaneum]

 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/201 (49%), Positives = 135/201 (67%), Gaps = 39/201 (19%)

Query: 4   EIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLD 63
           +I+DL EKL+T+KIK +E                                  +EK ++LD
Sbjct: 218 QIRDLGEKLETLKIKRQED---------------------------------KEKLKELD 244

Query: 64  EMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEMMTL 119
           ++KIQL+Q  EFK KIME QA L+RE+++ KQE +EAVEAKE    + ADL E +EM TL
Sbjct: 245 KLKIQLEQLVEFKTKIMEVQASLQREVQRAKQEAKEAVEAKEAHAEEVADLAEAVEMATL 304

Query: 120 DKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTE--VSHYQIKQL 177
           DKEMAEE+AETLQ+EL++ KEK+EE+TLD++++K ++++   G     E  VS Y++KQL
Sbjct: 305 DKEMAEEKAETLQLELEVCKEKLEEVTLDLKILKTEMQERAGGTSASGEEAVSTYEVKQL 364

Query: 178 EQQNMRLRETLVRLRDLSAHE 198
           +QQN RLRETLVRLRDLSAH+
Sbjct: 365 QQQNARLRETLVRLRDLSAHD 385

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357623688|gb|EHJ74738.1| dynactin [Danaus plexippus]

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/207 (48%), Positives = 138/207 (66%), Gaps = 43/207 (20%)

Query: 1   MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
           +KAE++DLKEKL+T+K++  E                                  REK R
Sbjct: 197 LKAEVEDLKEKLETLKVRRAED---------------------------------REKLR 223

Query: 61  DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEA----KEDTADLVETLEM 116
           +L+ M++QLDQ+ EFKAKIMESQA L+R+L++ KQE +EA EA     ++TADL E  EM
Sbjct: 224 ELERMRLQLDQANEFKAKIMESQAQLQRDLQRAKQELREAQEALDQHNDETADLQEAAEM 283

Query: 117 MTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCD-----GAGDGTEVSH 171
             LDKEMAEERAE LQ+EL+ A+EK+EE TLD++LM+A++E   +      AGD +  + 
Sbjct: 284 AALDKEMAEERAEALQLELEQAREKLEEATLDLQLMRAEMEAGGNIQHPYAAGD-SGATG 342

Query: 172 YQIKQLEQQNMRLRETLVRLRDLSAHE 198
           Y+++QL+QQN+RLR+TLVRLRDLSAH+
Sbjct: 343 YEVRQLQQQNVRLRDTLVRLRDLSAHD 369

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016243|ref|XP_003692097.1| PREDICTED: dynactin subunit 1-like [Apis florea]

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/202 (45%), Positives = 133/202 (65%), Gaps = 37/202 (18%)

Query: 1   MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
           +K++++DL EK++T+++K                                   + +E+ +
Sbjct: 221 LKSQVRDLTEKVETLRVKR---------------------------------MQDKERIK 247

Query: 61  DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEM 116
           D ++ K+Q+DQ  EFK K+MESQA L+REL++ +QE +EA  A+E    + ADL ET+EM
Sbjct: 248 DFEKTKLQVDQLIEFKTKVMESQASLQRELQRARQEAREAHAAREQFQEEMADLAETVEM 307

Query: 117 MTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQ 176
            TLDKEMAEE+AETLQ+EL+  KEK+EE TLD+E+++ ++ +   G G    VS+Y+IKQ
Sbjct: 308 ATLDKEMAEEKAETLQIELEQLKEKLEEQTLDLEILRTEVSERTAGGGSTAGVSNYEIKQ 367

Query: 177 LEQQNMRLRETLVRLRDLSAHE 198
           LEQQN RLRETLVR+RDLSAHE
Sbjct: 368 LEQQNNRLRETLVRMRDLSAHE 389

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783650|ref|XP_397370.3| PREDICTED: dynactin subunit 1 [Apis mellifera]

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/202 (45%), Positives = 133/202 (65%), Gaps = 37/202 (18%)

Query: 1   MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
           +K++++DL EK++T+++K                                   + +E+ +
Sbjct: 221 LKSQVRDLTEKVETLRVKR---------------------------------MQDKERIK 247

Query: 61  DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEM 116
           D ++ K+Q+DQ  EFK K+MESQA L+REL++ +QE +EA  A+E    + ADL ET+EM
Sbjct: 248 DFEKTKLQVDQLIEFKTKVMESQASLQRELQRARQEAREAHAAREQFQEEMADLAETVEM 307

Query: 117 MTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQ 176
            TLDKEMAEE+AETLQ+EL+  KEK+EE TLD+E+++ ++ +   G G    VS+Y+IKQ
Sbjct: 308 ATLDKEMAEEKAETLQIELEQLKEKLEEQTLDLEILRTEVSERTAGGGSTAGVSNYEIKQ 367

Query: 177 LEQQNMRLRETLVRLRDLSAHE 198
           LEQQN RLRETLVR+RDLSAHE
Sbjct: 368 LEQQNNRLRETLVRMRDLSAHE 389

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383866227|ref|XP_003708572.1| PREDICTED: dynactin subunit 1-like [Megachile rotundata]

 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 92/202 (45%), Positives = 132/202 (65%), Gaps = 37/202 (18%)

Query: 1   MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
           +K++++DL EK++T+++K                                   + +E+ +
Sbjct: 221 LKSQVRDLTEKVETLRVKR---------------------------------MQDKERMK 247

Query: 61  DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEM 116
           D ++ K+QL+Q  EFK K+MESQA L+REL++ +QE ++A  A+E    + ADL ET+EM
Sbjct: 248 DFEKTKLQLEQLIEFKTKVMESQASLQRELQRARQEARDAHVAREQFQEEMADLAETVEM 307

Query: 117 MTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQ 176
            TLDKEMAEE+AETLQ+EL+  KEK+EE TLD+E+++ +I +   G G  T  S Y+IKQ
Sbjct: 308 ATLDKEMAEEKAETLQIELEQLKEKLEEQTLDLEILRTEISERTAGGGSATGASSYEIKQ 367

Query: 177 LEQQNMRLRETLVRLRDLSAHE 198
           LEQQN RLRETLVR+RDLSAHE
Sbjct: 368 LEQQNNRLRETLVRMRDLSAHE 389

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157112397|ref|XP_001657515.1| dynactin [Aedes aegypti] gi|108878076|gb|EAT42301.1| AAEL006145-PA [Aedes aegypti]

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/152 (55%), Positives = 117/152 (76%), Gaps = 9/152 (5%)

Query: 56  REKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAK----EDTADLV 111
           +E+ R+ D+MK Q DQ  EFK+KIM++ + L+R+ ++ KQE ++A+EA+    E+ A+L 
Sbjct: 238 KERLREFDKMKTQYDQLVEFKSKIMDAHSQLQRDYQRAKQEAKDAIEARDLHIEEMAELS 297

Query: 112 ETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGA-----GDG 166
           E +EM+TLDKEMAEE+A+TL +EL+ AKE+IEELTLD+E+MK ++++   G      G G
Sbjct: 298 ENVEMITLDKEMAEEKADTLALELETAKERIEELTLDLEIMKTEMQEKMAGGGVISDGTG 357

Query: 167 TEVSHYQIKQLEQQNMRLRETLVRLRDLSAHE 198
           T VS Y+ KQLEQQN RLRETLVRLRDLSAHE
Sbjct: 358 TGVSTYEFKQLEQQNARLRETLVRLRDLSAHE 389

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170034713|ref|XP_001845217.1| 150 kDa dynein-associated polypeptide [Culex quinquefasciatus] gi|167876347|gb|EDS39730.1| 150 kDa dynein-associated polypeptide [Culex quinquefasciatus]

 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/151 (56%), Positives = 119/151 (78%), Gaps = 9/151 (5%)

Query: 56  REKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAK----EDTADLV 111
           RE+ R+ D++K Q DQ  EFK+KIM++ + L+R+L++ KQE ++A+EA+    E+ A+L 
Sbjct: 274 RERLREFDKLKTQYDQLVEFKSKIMDAHSQLQRDLQRAKQEAKDAIEARDQHSEEMAELS 333

Query: 112 ETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKS----CDGAGDGT 167
           E +EM+TLDKEMAEE+A+TL +EL+ AKE+IEELTLD+E++K ++++      DG G GT
Sbjct: 334 ENVEMITLDKEMAEEKADTLALELETAKERIEELTLDLEILKTEMQEKGTVIGDGTG-GT 392

Query: 168 EVSHYQIKQLEQQNMRLRETLVRLRDLSAHE 198
             S Y+ KQLEQQN+RLRETLVRLRDLSAHE
Sbjct: 393 GASTYEFKQLEQQNVRLRETLVRLRDLSAHE 423

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195494201|ref|XP_002094736.1| GE21986 [Drosophila yakuba] gi|194180837|gb|EDW94448.1| GE21986 [Drosophila yakuba]

 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/165 (50%), Positives = 122/165 (73%), Gaps = 11/165 (6%)

Query: 56  REKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLV 111
           +E+ R+ D+MKIQ +Q  EF+ KIM +QA L++EL++ KQE ++A+EAKE    + ADL 
Sbjct: 254 KERLREFDKMKIQFEQLQEFRTKIMAAQASLQKELQRAKQEAKDAIEAKEQHAQEMADLA 313

Query: 112 ETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCD-------GAG 164
           + +EM+TLDKEMAEE+A+TLQ+EL+ +KE+IEEL +D+EL++++++   +       G G
Sbjct: 314 DNVEMITLDKEMAEEKADTLQLELESSKERIEELQVDLELLRSEMQNKAESAIGNISGGG 373

Query: 165 DGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRL 209
           D   +S Y+ KQLEQQN+RL+ETLVRLRDLSAH+  +  K    L
Sbjct: 374 DSPGLSTYEFKQLEQQNIRLKETLVRLRDLSAHDKHDIQKLSKEL 418

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	640
FB|FBgn0001108	1265	Gl "Glued" [Drosophila melanog	0.351	0.177	0.418	2.3e-39
UNIPROTKB|Q14203	1278	DCTN1 "Dynactin subunit 1" [Ho	0.498	0.249	0.306	6.4e-28
RGD|62038	1280	Dctn1 "dynactin 1" [Rattus nor	0.498	0.249	0.307	5.5e-27
UNIPROTKB|D4A8U7	1239	Dctn1 "Dynactin subunit 1" [Ra	0.498	0.257	0.306	8.3e-27
UNIPROTKB|F1SNT8	1286	DCTN1 "Uncharacterized protein	0.498	0.248	0.306	9.3e-27
MGI|MGI:107745	1281	Dctn1 "dynactin 1" [Mus muscul	0.498	0.249	0.306	1.5e-26
UNIPROTKB|F1MIC9	1239	DCTN1 "Uncharacterized protein	0.501	0.259	0.305	2.4e-26
UNIPROTKB|P35458	1224	DCTN1 "Dynactin subunit 1" [Ga	0.465	0.243	0.311	2.6e-26
ZFIN|ZDB-GENE-050419-28	1114	dctn1b "dynactin 1b" [Danio re	0.504	0.289	0.296	5e-26
ZFIN|ZDB-GENE-070117-2205	1226	dctn1a "dynactin 1a" [Danio re	0.506	0.264	0.291	1.2e-23

FB|FBgn0001108 Gl "Glued" [Drosophila melanogaster (taxid:7227)]

 Score = 387 (141.3 bits), Expect = 2.3e-39, Sum P(2) = 2.3e-39
 Identities = 102/244 (41%), Positives = 151/244 (61%)

Query:   319 RLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALG 378
             RLRDLSAH+KH++ KL K++E K+ E  EL +++EKL  ++ ELEA  ADL EQVDAALG
Sbjct:   399 RLRDLSAHDKHDIQKLSKELEMKRSEVTELERTKEKLSAKIDELEAIVADLQEQVDAALG 458

Query:   379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQXXXXXXXXXXXXXXXMARSA 438
             AEEMV+QL+ +K+ELED V    EEI  LEAL+ V +QL                +A  A
Sbjct:   459 AEEMVEQLAEKKMELEDKVKLLEEEIAQLEALEEVHEQLVESNHELELDLREELDLANGA 518

Query:   439 TREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVKFRELNSLDEKV 498
              +EV+RE++AA+E++ DR+ TIVKFRELV        + L D +LT  + R+ NS +EK 
Sbjct:   519 KKEVLRERDAAIETIYDRDQTIVKFRELV--------QKLND-QLT--ELRDRNSSNEKE 567

Query:   499 STENIE-KCVTYFNTFYPVLFPDTK-FSHVGHLLMDYVKILSTASDCLQTDSKIIQALIQ 556
             S ++   K VT     Y  +F ++K ++    + +  ++ LS A++ +Q    ++ A + 
Sbjct:   568 SLQDPSLKMVTE-TIDYKQMFAESKAYTRAIDVQLRQIE-LSQANEHVQ----MLTAFMP 621

Query:   557 ETMM 560
             E+ M
Sbjct:   622 ESFM 625

GO:0001709 "cell fate determination" evidence=IMP

GO:0001751 "compound eye photoreceptor cell differentiation" evidence=IMP

GO:0016330 "second mitotic wave involved in compound eye morphogenesis" evidence=IMP

GO:0042051 "compound eye photoreceptor development" evidence=IMP

GO:0042052 "rhabdomere development" evidence=IMP

GO:0008090 "retrograde axon cargo transport" evidence=IMP;NAS

GO:0003777 "microtubule motor activity" evidence=NAS

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0005869 "dynactin complex" evidence=ISS;NAS;TAS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0048477 "oogenesis" evidence=NAS

GO:0045502 "dynein binding" evidence=TAS

GO:0001754 "eye photoreceptor cell differentiation" evidence=IMP

GO:0051028 "mRNA transport" evidence=IMP

GO:0034501 "protein localization to kinetochore" evidence=IMP

GO:0047497 "mitochondrion transport along microtubule" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IMP

GO:0051383 "kinetochore organization" evidence=IMP

GO:0051299 "centrosome separation" evidence=IMP

GO:0051225 "spindle assembly" evidence=IMP

GO:0031616 "spindle pole centrosome" evidence=IDA

GO:0005828 "kinetochore microtubule" evidence=IDA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0045198 "establishment of epithelial cell apical/basal polarity" evidence=IDA

GO:0007067 "mitosis" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0035011 "melanotic encapsulation of foreign target" evidence=IMP

GO:0035371 "microtubule plus end" evidence=IDA

UNIPROTKB|Q14203 DCTN1 "Dynactin subunit 1" [Homo sapiens (taxid:9606)]

 Score = 318 (117.0 bits), Expect = 6.4e-28, Sum P(2) = 6.4e-28
 Identities = 108/352 (30%), Positives = 180/352 (51%)

Query:    56 REKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRXXXXXXXXXXXXXXXXX----DTADLV 111
             + K ++L++ KIQL+Q  E+K+K+ E QA L+R                     + AD  
Sbjct:   242 KAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMADTA 301

Query:   112 ETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIE-KSCDGAGDGTEVS 170
             + +EM TLDKEMAEERAE+LQ E++  KE+++ELT D+E++KA+IE K  DGA      S
Sbjct:   302 DAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAA-----S 356

Query:   171 HYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRD- 229
              YQ+KQLE+QN RL++ LVR+RDLS+ E   + K   +L +    E+    +   RL++ 
Sbjct:   357 SYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQ-KLMEKKNQELEVVRQQRERLQEE 415

Query:   230 LS-AHEIFNNNK--FDSRLYDLSAHEIFNNKN-KFDSRLR-------DLSAHEIFNNKNK 278
             LS A    +  K   D+ L      E+  ++N   + ++R       DL A    N++ +
Sbjct:   416 LSQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQ 475

Query:   279 FDSRLRDLSAHE---IFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEK---HEMS 332
              ++R  +L   E   +      +++ R  +A E   +  +   + R L+AH +    E++
Sbjct:   476 ENARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELT 535

Query:   333 KLQK-DIEEKKQENAELIKSQEKLKQRVTELEADCADLH-EQVDAALGAEEM 382
               Q+  +E ++Q   E      K+K   T+  A   ++   Q++ A     M
Sbjct:   536 NQQEASVERQQQPPPETFDF--KIKFAETKAHAKAIEMELRQMEVAQANRHM 585

GO:0003774 "motor activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0007399 "nervous system development" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0000922 "spindle pole" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0005874 "microtubule" evidence=IDA

GO:0005737 "cytoplasm" evidence=TAS

GO:0007067 "mitosis" evidence=NAS

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

RGD|62038 Dctn1 "dynactin 1" [Rattus norvegicus (taxid:10116)]

 Score = 320 (117.7 bits), Expect = 5.5e-27, Sum P(2) = 5.5e-27
 Identities = 108/351 (30%), Positives = 180/351 (51%)

Query:    56 REKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRXXXXXXXXXXXXXXXXX---DTADLVE 112
             + K ++L++ KIQL+Q  E+K+K+ E QA L+R                    + AD  +
Sbjct:   242 KAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEAKEAKEALEAKERYMEEMADTAD 301

Query:   113 TLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIE-KSCDGAGDGTEVSH 171
              +EM TLDKEMAEERAE+LQ E++  KE+++ELT D+E++KA+IE K  DGA      S 
Sbjct:   302 AIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAA-----SS 356

Query:   172 YQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRD-L 230
             YQ+KQLE+QN RL++ LVR+RDLS+ E   + K   +L +    E+    +   RL++ L
Sbjct:   357 YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQ-KLMEKKNQELEVVRQQRERLQEEL 415

Query:   231 S-AHEIFNNNK--FDSRLYDLSAHEIFNNKN-KFDSRLR-------DLSAHEIFNNKNKF 279
             S A    +  K   D+ L      E+  ++N   + ++R       DL A    N++ + 
Sbjct:   416 SQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQE 475

Query:   280 DSRLRDLSAHE---IFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEK---HEMSK 333
             ++R  +L   E   +      +++ R  +A E   +  +   + R L+AH +    E++ 
Sbjct:   476 NARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTN 535

Query:   334 LQK-DIEEKKQENAELIKSQEKLKQRVTELEADCADLH-EQVDAALGAEEM 382
              Q+  +E ++Q   E      K+K   T+  A   ++   Q++ A     M
Sbjct:   536 QQEASVERQQQPPPETFDF--KIKFAETKAHAKAIEMELRQMEVAQANRHM 584

GO:0000776 "kinetochore" evidence=IEA;ISO

GO:0000922 "spindle pole" evidence=IEA;ISO

GO:0003777 "microtubule motor activity" evidence=TAS

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005868 "cytoplasmic dynein complex" evidence=IDA

GO:0005874 "microtubule" evidence=IEA;ISO

GO:0006810 "transport" evidence=IEA

GO:0007017 "microtubule-based process" evidence=TAS

GO:0031252 "cell leading edge" evidence=IEA;ISO

UNIPROTKB|D4A8U7 Dctn1 "Dynactin subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 318 (117.0 bits), Expect = 8.3e-27, Sum P(2) = 8.3e-27
 Identities = 108/352 (30%), Positives = 180/352 (51%)

Query:    56 REKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRXXXXXXXXXXXXXXXXX----DTADLV 111
             + K ++L++ KIQL+Q  E+K+K+ E QA L+R                     + AD  
Sbjct:   205 KAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMADTA 264

Query:   112 ETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIE-KSCDGAGDGTEVS 170
             + +EM TLDKEMAEERAE+LQ E++  KE+++ELT D+E++KA+IE K  DGA      S
Sbjct:   265 DAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAA-----S 319

Query:   171 HYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRD- 229
              YQ+KQLE+QN RL++ LVR+RDLS+ E   + K   +L +    E+    +   RL++ 
Sbjct:   320 SYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQ-KLMEKKNQELEVVRQQRERLQEE 378

Query:   230 LS-AHEIFNNNK--FDSRLYDLSAHEIFNNKN-KFDSRLR-------DLSAHEIFNNKNK 278
             LS A    +  K   D+ L      E+  ++N   + ++R       DL A    N++ +
Sbjct:   379 LSQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQ 438

Query:   279 FDSRLRDLSAHE---IFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEK---HEMS 332
              ++R  +L   E   +      +++ R  +A E   +  +   + R L+AH +    E++
Sbjct:   439 ENARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELT 498

Query:   333 KLQK-DIEEKKQENAELIKSQEKLKQRVTELEADCADLH-EQVDAALGAEEM 382
               Q+  +E ++Q   E      K+K   T+  A   ++   Q++ A     M
Sbjct:   499 NQQEASVERQQQPPPETFDF--KIKFAETKAHAKAIEMELRQMEVAQANRHM 548

GO:0000776 "kinetochore" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

UNIPROTKB|F1SNT8 DCTN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 318 (117.0 bits), Expect = 9.3e-27, Sum P(2) = 9.3e-27
 Identities = 108/352 (30%), Positives = 180/352 (51%)

Query:    56 REKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRXXXXXXXXXXXXXXXXX----DTADLV 111
             + K ++L++ KIQL+Q  E+K+K+ E QA L+R                     + AD  
Sbjct:   242 KAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMADTA 301

Query:   112 ETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIE-KSCDGAGDGTEVS 170
             + +EM TLDKEMAEERAE+LQ E++  KE+++ELT D+E++KA+IE K  DGA      S
Sbjct:   302 DAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAA-----S 356

Query:   171 HYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRD- 229
              YQ+KQLE+QN RL++ LVR+RDLS+ E   + K   +L +    E+    +   RL++ 
Sbjct:   357 SYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQ-KLMEKKNQELEVVRQQRERLQEE 415

Query:   230 LS-AHEIFNNNK--FDSRLYDLSAHEIFNNKN-KFDSRLR-------DLSAHEIFNNKNK 278
             LS A    +  K   D+ L      E+  ++N   + ++R       DL A    N++ +
Sbjct:   416 LSQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQ 475

Query:   279 FDSRLRDLSAHE---IFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEK---HEMS 332
              ++R  +L   E   +      +++ R  +A E   +  +   + R L+AH +    E++
Sbjct:   476 ENARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELT 535

Query:   333 KLQK-DIEEKKQENAELIKSQEKLKQRVTELEADCADLH-EQVDAALGAEEM 382
               Q+  +E ++Q   E      K+K   T+  A   ++   Q++ A     M
Sbjct:   536 NQQEASVERQQQPPPETFDF--KIKFAETKAHAKAIEMELRQMEVAQANRHM 585

GO:0031252 "cell leading edge" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

MGI|MGI:107745 Dctn1 "dynactin 1" [Mus musculus (taxid:10090)]

 Score = 318 (117.0 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
 Identities = 108/352 (30%), Positives = 180/352 (51%)

Query:    56 REKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRXXXXXXXXXXXXXXXXX----DTADLV 111
             + K ++L++ KIQL+Q  E+K+K+ E QA L+R                     + AD  
Sbjct:   242 KAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMADTA 301

Query:   112 ETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIE-KSCDGAGDGTEVS 170
             + +EM TLDKEMAEERAE+LQ E++  KE+++ELT D+E++KA+IE K  DGA      S
Sbjct:   302 DAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAA-----S 356

Query:   171 HYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRD- 229
              YQ+KQLE+QN RL++ LVR+RDLS+ E   + K   +L +    E+    +   RL++ 
Sbjct:   357 SYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQ-KLMEKKNQELEVVRQQRERLQEE 415

Query:   230 LS-AHEIFNNNK--FDSRLYDLSAHEIFNNKN-KFDSRLR-------DLSAHEIFNNKNK 278
             LS A    +  K   D+ L      E+  ++N   + ++R       DL A    N++ +
Sbjct:   416 LSQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQ 475

Query:   279 FDSRLRDLSAHE---IFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEK---HEMS 332
              ++R  +L   E   +      +++ R  +A E   +  +   + R L+AH +    E++
Sbjct:   476 ENARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELT 535

Query:   333 KLQK-DIEEKKQENAELIKSQEKLKQRVTELEADCADLH-EQVDAALGAEEM 382
               Q+  +E ++Q   E      K+K   T+  A   ++   Q++ A     M
Sbjct:   536 NQQEASVERQQQPPPETFDF--KIKFAETKAHAKAIEMELRQMEVAQANRHM 585

GO:0000776 "kinetochore" evidence=ISO

GO:0000922 "spindle pole" evidence=ISO

GO:0003774 "motor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005868 "cytoplasmic dynein complex" evidence=ISO

GO:0005874 "microtubule" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0031252 "cell leading edge" evidence=IDA

UNIPROTKB|F1MIC9 DCTN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 314 (115.6 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
 Identities = 107/350 (30%), Positives = 174/350 (49%)

Query:    56 REKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRXXXXXXXXXXXXXXXXX----DTADLV 111
             + K ++L++ KIQL+Q  E+K+K+ E QA L+R                     + AD  
Sbjct:   205 KAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMADTA 264

Query:   112 ETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIE-KSCDGAGDGTEVS 170
             + +EM TLDKEMAEERAE+LQ E ++ +E++EELT D+E++KA+IE K  DGA      S
Sbjct:   265 DAIEMATLDKEMAEERAESLQQEAEVLRERVEELTTDLEILKAEIEEKGSDGAA-----S 319

Query:   171 HYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRD- 229
              YQ+KQLE+QN RL++ LVR+RDLS+ E   + K   +L +    E+    +   RL++ 
Sbjct:   320 SYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQ-KLMEKKNQELEVVRQQRERLQEE 378

Query:   230 LS-AHEIFNNNK--FDSRLYDLSAHEIFNNKN--------KFDSRLRDLSAHEIFNNKNK 278
             LS A    +  K   D+ L      E   ++N        K    + DL A    N++ +
Sbjct:   379 LSQAERTIDELKEQVDAALGAEEMVETLTDRNLDLEEKVRKLKETVGDLEAINEMNDELQ 438

Query:   279 FDSRLRDLSAHE---IFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKL- 334
              ++R  +L   E   +      D++ R  +A E   +  +   + R L+AH +     L 
Sbjct:   439 ENARETELELREQLDMAGAQVRDAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRALT 498

Query:   335 -QKDIEEKKQENAELIKSQEKLKQRVTELEADCADLH-EQVDAALGAEEM 382
              Q++   ++Q+         K+K   T+  A   ++   Q++ A     M
Sbjct:   499 NQQEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHM 548

GO:0031252 "cell leading edge" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

UNIPROTKB|P35458 DCTN1 "Dynactin subunit 1" [Gallus gallus (taxid:9031)]

 Score = 319 (117.4 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
 Identities = 105/337 (31%), Positives = 169/337 (50%)

Query:    56 REKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRXXXXXXXXXXXXXXXXX----DTADLV 111
             + K ++L++ KIQL+Q  E+K+K+ E QA L+R                     + AD  
Sbjct:   235 KAKLKELEKYKIQLEQVQEWKSKMQEQQADLQRRLKEAKKEAKDALEAKERYMEEMADTA 294

Query:   112 ETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIE-KSCDGAGDGTEVS 170
             + +EM TLDKEMAEERAE+LQ E+D  KEK+E LT+D+E++K +IE K  DGA      S
Sbjct:   295 DAIEMATLDKEMAEERAESLQQEVDSLKEKVEYLTMDLEILKHEIEEKGSDGAA-----S 349

Query:   171 HYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDL 230
              YQ+KQLE+QN RL+E LVR+RDLSA E   + K   ++          N + +S LR  
Sbjct:   350 SYQVKQLEEQNARLKEALVRMRDLSASEKQEHVKLQKQMEK-------KNTELES-LRQ- 400

Query:   231 SAHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKN-KFDSRLRDLSAH 289
                ++    K   +  D    E+   K + D+ L      E    +N   + ++R+L   
Sbjct:   401 QREKLQEEVKQAEKTVD----EL---KEQVDAALGAEEMVETLTERNLDLEEKVRELR-- 451

Query:   290 EIFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENA-EL 348
                        + DL A    N++ + ++R  +L   E+ +++  +    EK+ E A E 
Sbjct:   452 ---------ETVGDLEAMNEMNDELQENARETELELREQLDLAAARVREAEKRVEAAQET 502

Query:   349 IKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQ 385
             +   ++  ++  EL A   D++ ++ +   A    QQ
Sbjct:   503 VADYQQTIKKYRELTAHLQDVNRELMSQQEASAEKQQ 539

GO:0003774 "motor activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-050419-28 dctn1b "dynactin 1b" [Danio rerio (taxid:7955)]

 Score = 308 (113.5 bits), Expect = 5.0e-26, Sum P(2) = 5.0e-26
 Identities = 105/354 (29%), Positives = 175/354 (49%)

Query:    56 REKTRDLDEMKIQLDQSAEFKAKIMESQ----AGLKRXXXXXXXXXXXXXXXXXDTADLV 111
             + K ++L++ KIQL+Q  E+K+K+ E Q      LK                  + AD  
Sbjct:    85 KAKLKELEKHKIQLEQLQEWKSKMQEQQNELQKQLKEAKREAKEALEAKERYMEEMADTA 144

Query:   112 ETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIE-KSCDGAGDGTEVS 170
             + +EM TLDKEMAEERAE+LQ+E D  KE+++ELT+D+E++K +IE K  DGA      S
Sbjct:   145 DAIEMATLDKEMAEERAESLQLEADALKERVDELTMDLEILKHEIEEKGSDGAA-----S 199

Query:   171 HYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRD- 229
              Y +KQLE+QN RL+E LVR+RDLSA E   + K   +L +    E+        +L++ 
Sbjct:   200 SYHVKQLEEQNARLKEALVRMRDLSASEKQEHGK-QQKLMEKKNFELDALRCHKEKLQEE 258

Query:   230 -LSAHEIFNNNK--FDSRLYDLSAHEIFNNKN-KFDSRLR-------DLSAHEIFNNKNK 278
                A +  +  K   D+ L      E+   +N   + ++R       DL A    N++ +
Sbjct:   259 MKMAEKTIDELKEQVDASLGAEEMVEMLTERNLDLEEKVRELRETVADLEAINEMNDELQ 318

Query:   279 FDSRLRDLSAHEIFNNNKF---DSRLRDLSAHEIFNNKNKFDSRLRDLSAHEKH---EMS 332
              ++R  +L   E  +       ++  R  +A E   +  +   + R+L+A+ +    E+ 
Sbjct:   319 ENARETELELREQLDLGAAGVREAEKRVEAAQETVADYQQTIQKYRELTANLQEVNRELM 378

Query:   333 KLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQL 386
               Q+   E++Q+ AE+     K+K   T+  A   ++  +    + A   V  L
Sbjct:   379 SQQEANSEQQQQPAEIFDF--KIKFAETKAYAKAIEMELRKMEVIQANRQVSLL 430

GO:0060219 "camera-type eye photoreceptor cell differentiation" evidence=IGI

ZFIN|ZDB-GENE-070117-2205 dctn1a "dynactin 1a" [Danio rerio (taxid:7955)]

 Score = 300 (110.7 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
 Identities = 106/364 (29%), Positives = 178/364 (48%)

Query:    56 REKTRDLDEMKIQLDQSAEFKAKIMESQAGL----KRXXXXXXXXXXXXXXXXXDTADLV 111
             + K +++++ KIQL+Q  E+++K+ E Q  L    K                  + AD  
Sbjct:   196 KAKLKEMEKYKIQLEQLQEWRSKMQEQQNDLQKQLKEAKKEAREALEAKDRYMEEMADTA 255

Query:   112 ETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIE-KSCDGAGDGTEVS 170
             + +EM TLDKEMAEERAE+LQ E +  KEK+EELT+D+E++K +IE K  DGA      S
Sbjct:   256 DAIEMATLDKEMAEERAESLQQETESLKEKLEELTMDMEILKHEIEEKGSDGAA-----S 310

Query:   171 HYQIKQLEQQNMRLRETLVR-LRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRD 229
              Y +KQLE+QN RL+E LVR +RDLS+ E   + K   ++            K +S L  
Sbjct:   311 SYHVKQLEEQNARLKEALVRWMRDLSSSEKQEHVKLQKQME-----------KKNSELET 359

Query:   230 LSAHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKN-KFDSRLRDLSA 288
             L + +     K    +  L+   I   K + D+ L      E    +N   + ++R+L  
Sbjct:   360 LRSQK----EKLQEEM-KLAEDTIDELKEQVDAALGAEEMVETLTERNLDLEEKVREL-- 412

Query:   289 HEIFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAEL 348
              E  ++ +  + + D    E+  N  + +  LR+        + + QK +E  ++  A+ 
Sbjct:   413 RETVSDLESINEMND----ELQENARETELELREQLDLAGARVREAQKRVEAAQETLADY 468

Query:   349 IKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE 408
              ++  K ++  T L+    +L  Q  ++  AE++ Q  +    EL D   K AE     +
Sbjct:   469 QQTINKYRELTTHLQEVNRELTNQQSSS--AEQLQQPAA----ELFDFKIKFAETKAYAK 522

Query:   409 ALQV 412
             A+++
Sbjct:   523 AIEM 526

GO:0045176 "apical protein localization" evidence=IMP

GO:0040023 "establishment of nucleus localization" evidence=IMP

GO:0060042 "retina morphogenesis in camera-type eye" evidence=IMP

GO:0048663 "neuron fate commitment" evidence=IMP

GO:0010842 "retina layer formation" evidence=IGI;IMP

GO:0060219 "camera-type eye photoreceptor cell differentiation" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	640
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	5e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	4e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
PRK11281	1113	PRK11281, PRK11281, hypothetical protein; Provisio	0.001
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
TIGR03007	498	TIGR03007, pepcterm_ChnLen, polysaccharide chain l	0.002
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	0.002
pfam09789	319	pfam09789, DUF2353, Uncharacterized coiled-coil pr	0.002
pfam12455	274	pfam12455, Dynactin, Dynein associated protein	0.003
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 41/168 (24%), Positives = 90/168 (53%), Gaps = 12/168 (7%)

Query: 2   KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRD 61
           K E++ L++ L+ ++ +  E  R L+E+K +L  + E + + ++S+         E   +
Sbjct: 694 KNELRSLEDLLEELRRQLEELERQLEELKREL-AALEEELEQLQSRLEELEEELEELEEE 752

Query: 62  LDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDT-----------ADL 110
           L+E++ +L++  E    + E+ A LK E+E+L++++Q   E  E+              L
Sbjct: 753 LEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDAL 812

Query: 111 VETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEK 158
              LE +   +E  E+  E L+ E++  +EK++EL  ++E ++ ++E+
Sbjct: 813 ERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEE 860

Length = 1163

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 46.2 bits (110), Expect = 5e-05
 Identities = 37/183 (20%), Positives = 81/183 (44%), Gaps = 19/183 (10%)

Query: 4   EIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLD 63
           E +DL E+L+ ++ +  E   +++  + Q +Q+ E +      +A   L  + E+  +L+
Sbjct: 200 EEKDLHERLNGLESELAELDEEIERYEEQREQARETR-----DEADEVLEEHEERREELE 254

Query: 64  EMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEM 123
            ++ +++   E  A+    +  L  E+  L++      E +E+  DL+    +   D E 
Sbjct: 255 TLEAEIEDLRETIAETEREREELAEEVRDLRER---LEELEEERDDLLAEAGLDDADAEA 311

Query: 124 AEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMR 183
            E R E L+   +  ++++EE  +  +    + E   + A             LE++   
Sbjct: 312 VEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDA-----------DDLEERAEE 360

Query: 184 LRE 186
           LRE
Sbjct: 361 LRE 363

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 41/165 (24%), Positives = 93/165 (56%), Gaps = 7/165 (4%)

Query: 2   KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEF---KAKIMESQAASSLFRYREK 58
           + +++  +E L+ ++    E  + L++++ Q +++  +   KA++ E + A  L + +E 
Sbjct: 178 ERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKEL 237

Query: 59  TRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQE----AVEAKEDTADLVETL 114
            ++L+E++ +L +  E   ++ E     ++E+E+LK E +E      E +E+  +L E +
Sbjct: 238 RKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEI 297

Query: 115 EMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKS 159
           E +  +  +  ER E L+ EL+  +E++EEL   IE +K ++E+ 
Sbjct: 298 EELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEER 342

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 42/192 (21%), Positives = 91/192 (47%), Gaps = 14/192 (7%)

Query: 17  IKYREKTRDLDEMKIQL--DQSAEFKAKI--MESQAASSLFRYREKTRDLDEMKIQLDQS 72
            +Y+E   +L E+++ L   +  E + ++  ++ +   +     E T +L E++ +L++ 
Sbjct: 213 ERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEEL 272

Query: 73  ----AEFKAKIMESQAGL---KRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAE 125
               +E + +I E Q  L     E+ +L+Q+KQ   E      +L   LE +    E  E
Sbjct: 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA---NLERQLEELEAQLEELE 329

Query: 126 ERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLR 185
            + + L  EL   +EK+EEL  ++E ++A++E+      +         +QLE    ++ 
Sbjct: 330 SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389

Query: 186 ETLVRLRDLSAH 197
           +  +++  L+  
Sbjct: 390 QLELQIASLNNE 401

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 25/101 (24%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 320 LRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGA 379
            R+     + E+++LQ+++ E +++ AEL +  ++LKQ ++ LEA+   L +++      
Sbjct: 64  ARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQL 123

Query: 380 EEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQED 420
                +L  +  EL + +++  +E   LEA    +++LQE+
Sbjct: 124 SANAIELDEENRELREELAELKQENEALEA---ENERLQEN 161

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 44/202 (21%), Positives = 96/202 (47%), Gaps = 14/202 (6%)

Query: 2   KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKI---------MESQAASSL 52
           +  + +L+++L+ ++ +  +  ++L+E+  Q+    +  A++           +Q +  L
Sbjct: 697 EKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756

Query: 53  FRYREKTRDLDEMKIQL-DQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLV 111
                +  +L+E   +  ++ AE +A+I E +A +++  E+LK  ++   E + +   L 
Sbjct: 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN 816

Query: 112 ETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSH 171
           E    +    E  E R    +  L+  +E+IEEL+ DIE + A+IE+      +  E   
Sbjct: 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE----LEELIEELE 872

Query: 172 YQIKQLEQQNMRLRETLVRLRD 193
            +++ L  +   L E L  LR 
Sbjct: 873 SELEALLNERASLEEALALLRS 894

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 43.2 bits (103), Expect = 4e-04
 Identities = 45/151 (29%), Positives = 80/151 (52%), Gaps = 27/151 (17%)

Query: 308 EIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCA 367
           EI   +N+F+  LR+     ++E+ KL+K + +K++    L +  E L++R  ELE    
Sbjct: 65  EIHKLRNEFEKELRE----RRNELQKLEKRLLQKEEN---LDRKLELLEKREEELEKKEK 117

Query: 368 DLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIE 427
           +L          E+  Q+L  ++ ELE+L+ +Q      L+ L+ +S    E+AKEI +E
Sbjct: 118 EL----------EQKQQELEKKEEELEELIEEQ------LQELERISGLTAEEAKEILLE 161

Query: 428 -LKEEVEMARSATREVIREKEAALESLADRE 457
            ++EE   AR     +I+E E   +  AD++
Sbjct: 162 KVEEE---ARHEAAVLIKEIEEEAKEEADKK 189

Length = 520

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 70/402 (17%), Positives = 165/402 (41%), Gaps = 68/402 (16%)

Query: 86  LKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEEL 145
           L+++LEKL+++ ++A   +E             L  E+ E     L  +L   ++++EEL
Sbjct: 198 LEKQLEKLERQAEKAERYQE-------------LKAELRELELALLLAKLKELRKELEEL 244

Query: 146 TLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKF 205
             ++  ++ ++E                  +L+++     + +  L+             
Sbjct: 245 EEELSRLEEELE------------------ELQEELEEAEKEIEELK------------- 273

Query: 206 DSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLR 265
            S L +L         +      ++   E       +  L      E+ N   + + RL 
Sbjct: 274 -SELEELREELEELQEELLELKEEIEELEG------EISLLRERLEELENELEELEERLE 326

Query: 266 DLSAHEIFNNKNKFDSRLRDLSAHE--IFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDL 323
           +L   +I   K + + R   L   E  +    +    L +  +  +   +  F++   +L
Sbjct: 327 ELK-EKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREEL 385

Query: 324 SAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMV 383
           +  E  E+++++ ++EE K+E   L +  E+L +R+ +L+ +  +L  +++     +  +
Sbjct: 386 AELEA-ELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEEL---QTEL 441

Query: 384 QQLSVQKLELEDLVSKQAEEIVDLE----ALQVVSDQLQEDAKEIEIELKEEVEMARS-- 437
           ++L+ +  ELE+ + +  + + +LE     LQ    +L+++   +E  L       R+  
Sbjct: 442 EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQ 501

Query: 438 ATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLA 479
             R V+   E+ L  +      ++K +E    + E ALE+  
Sbjct: 502 GVRAVLEALESGLPGVYGPVAELIKVKE----KYETALEAAL 539

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.4 bits (100), Expect = 7e-04
 Identities = 41/175 (23%), Positives = 83/175 (47%), Gaps = 21/175 (12%)

Query: 2   KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQS----AEFKAKIMESQAASSLFRYRE 57
           + E+++L+E+L   + +  E T +L E++ +L++     +E + +I E Q    L+    
Sbjct: 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE--LYALAN 295

Query: 58  KTRDLDEMKIQLDQS---------------AEFKAKIMESQAGLKRELEKLKQEKQEAVE 102
           +   L++ K  L +                 E ++K+ E    L    EKL++ K+E   
Sbjct: 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES 355

Query: 103 AKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIE 157
            + +  +L   LE +    E  EE+ ETL+ ++   + +I  L  +IE ++A +E
Sbjct: 356 LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE 410

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 75/365 (20%), Positives = 144/365 (39%), Gaps = 42/365 (11%)

Query: 2   KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRD 61
           K   ++ + KL+  +         L+E++ QL++        +E QA  +  RY+E   +
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEK--------LERQAEKAE-RYQELKAE 221

Query: 62  LDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDK 121
           L E+  +L        ++ +    L+ EL +L++E +E  E  E+    +E L+    + 
Sbjct: 222 LREL--ELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELK---SEL 276

Query: 122 EMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQN 181
           E   E  E LQ EL   KE+IEEL  +I L++  +E+  +   +  E    ++++L+++ 
Sbjct: 277 EELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEE----RLEELKEKI 332

Query: 182 MRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKF 241
             L+E L     L         + +    +L           + +L  L           
Sbjct: 333 EALKEELEERETLLEELEQLLAELEEAKEEL-----------EEKLSALLEELEELFEAL 381

Query: 242 DSRLYDLSAH--EIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDS 299
              L +L A   EI N   +    +  L          +   RL DL         + + 
Sbjct: 382 REELAELEAELAEIRNELEELKREIESLEE-----RLERLSERLEDLKEELKELEAELEE 436

Query: 300 RLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRV 359
              +L         N+    L +     +  + +L++++ E ++E   L K    L+ R+
Sbjct: 437 LQTEL------EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARL 490

Query: 360 TELEA 364
             LEA
Sbjct: 491 DRLEA 495

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 10/184 (5%)

Query: 328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLS 387
           K    +L++  EE  +   EL + QE+L++   E+E   ++L E  +     +E + +L 
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELK 294

Query: 388 VQKLELE----DLVSKQAEEIVDLEALQVVSDQLQE--DAKEIEIELKEEVEMARSATRE 441
            +  ELE     L  +  E   +LE L+   ++L+E  +A + E+E +E +         
Sbjct: 295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLA 354

Query: 442 VIREKEAALESLADRELTIVKFRELVIREKEAALESL---ADRELTIVKFRELNSLDEKV 498
            + E +  LE      L  ++     +RE+ A LE+       EL  +K RE+ SL+E++
Sbjct: 355 ELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELK-REIESLEERL 413

Query: 499 STEN 502
              +
Sbjct: 414 ERLS 417

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 71/365 (19%), Positives = 141/365 (38%), Gaps = 24/365 (6%)

Query: 36   SAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQ 95
            + + + K +E + A    +  +   +L  +K +L    +   ++      L+R+LE+LK+
Sbjct: 664  AQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKR 723

Query: 96   EKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKAD 155
            E     E  E     +E LE      E  EE  E LQ  L+  +E++E L   +  +K +
Sbjct: 724  ELAALEEELEQLQSRLEELEEE---LEELEEELEELQERLEELEEELESLEEALAKLKEE 780

Query: 156  IEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAH 215
            IE+  +      E      ++LE+   RL      L  L         + +    ++   
Sbjct: 781  IEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEEL 840

Query: 216  EI------FNNNKFDSRLRDLSAHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDL-- 267
            E           + +  L +L         + +    +L   E    K + +  LR+L  
Sbjct: 841  EEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELE--EEKEELEEELRELES 898

Query: 268  SAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHE 327
               E+     K   RL +L A       + +  L +L        ++  ++ L       
Sbjct: 899  ELAELKEEIEKLRERLEELEA----KLERLEVELPELEEELEEEYEDTLETELER----- 949

Query: 328  KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLS 387
              E+ +L+++IE     N   I+  E++++R  EL++   DL E  +  L   E + +  
Sbjct: 950  --EIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEK 1007

Query: 388  VQKLE 392
             ++ +
Sbjct: 1008 RERFK 1012

Length = 1163

>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional

 Score = 42.2 bits (100), Expect = 0.001
 Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 11/114 (9%)

Query: 82  SQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDK-EMAEERAETLQVELDLAKE 140
           ++A ++ +L+ L ++K    E K    DL +TL +  LDK +  +E  E L+ +L  A  
Sbjct: 37  TEADVQAQLDALNKQKLLEAEDKLVQQDLEQTLAL--LDKIDRQKEETEQLKQQLAQAPA 94

Query: 141 KIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDL 194
           K+ +   ++E +K D ++          +S   ++QLE    RL +TL +L++ 
Sbjct: 95  KLRQAQAELEALKDDNDEE-----TRETLSTLSLRQLES---RLAQTLDQLQNA 140

Length = 1113

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 86/504 (17%), Positives = 178/504 (35%), Gaps = 46/504 (9%)

Query: 2   KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRD 61
           +A  + L E  +  +     K R L+   ++L+     + ++   +    L    EK   
Sbjct: 235 EALEERLAELEEEKERLEELKARLLEIESLELEALKIREEEL--RELERLLEELEEKIER 292

Query: 62  LDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDK 121
           L+E++ ++++  E    +      L+  LEKLK  ++   + +E    L   LE +  +K
Sbjct: 293 LEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEK 352

Query: 122 EMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQN 181
               +  E    EL+   E++E+           +E                 + +++  
Sbjct: 353 NELAKLLEERLKELEERLEELEKELEKALERLKQLE-----------------EAIQELK 395

Query: 182 MRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKF 241
             L E    L ++         + +   R+L                     +       
Sbjct: 396 EELAELSAALEEIQEELEELEKELEELERELE--------------ELEEEIKKLEEQIN 441

Query: 242 DSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRL 301
                +L   E+     K     ++L           ++  L +L   E  +  K ++ L
Sbjct: 442 QLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELE--EELSREKEEAEL 499

Query: 302 RDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLK-QRVT 360
           R+    E+     + +  L +L   E+    +L++ +E+ +    EL + +EKL+ Q++ 
Sbjct: 500 REEIE-ELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLK 558

Query: 361 ELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQED 420
           E      D  +++   L        L  +K ELE+L  +  E    L+ L+    QL+E 
Sbjct: 559 EELRQLEDRLQELKELLEELR---LLRTRKEELEELRERLKELKKKLKELEERLSQLEEL 615

Query: 421 AKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELV---IREKEAALES 477
            + +E+   E          E +  +   L   A+ E  +    E +   + E EA +  
Sbjct: 616 LQSLELSEAEN---ELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRR 672

Query: 478 LADRELTIVKFRELNSLDEKVSTE 501
              R     +  E     E++  E
Sbjct: 673 ELQRIENEEQLEEKLEELEQLEEE 696

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 2/158 (1%)

Query: 1   MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
           ++ EI++L+EKLD ++ +  E  ++L+E+K +L++    K + +E +         E   
Sbjct: 833 LEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEE-LEDELKELEEEKEELEE 891

Query: 61  DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLD 120
           +L E++ +L +  E   K+ E    L+ +LE+L+ E  E  E  E+  +     E+    
Sbjct: 892 ELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREI 951

Query: 121 KEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEK 158
           + + EE      V L  A E+ EE+    E +K+  E 
Sbjct: 952 ERLEEEIEALGPVNLR-AIEEYEEVEERYEELKSQRED 988

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 42/203 (20%), Positives = 87/203 (42%), Gaps = 20/203 (9%)

Query: 318 SRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDA-- 375
            +L       K  + +L++D+   +QE   +    ++L+ R+ ELE D   L E ++   
Sbjct: 726 EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLE 785

Query: 376 ALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEA-------LQVVSDQLQEDAKEIEIEL 428
           A  +   + ++  +  +LE+ VS+    + ++E         +   ++  ++ +E  I+L
Sbjct: 786 ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845

Query: 429 KEEVEMARS----------ATREVIREKEAALESLADRELTIVKFRELVIREKEAALESL 478
           KE+++                 E + E EAAL  L  R   + K R+ +  +       +
Sbjct: 846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI 905

Query: 479 ADRELTIVKFRE-LNSLDEKVST 500
            + E  I K R+ L+ L  K+  
Sbjct: 906 EELEAQIEKKRKRLSELKAKLEA 928

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 13/148 (8%)

Query: 3   AEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDL 62
           +EI + +E+L+  +++  E     D +K QL    E    +  S  A+S    R     +
Sbjct: 204 SEISEAQEELEAARLELNEAIAQRDALKRQL--GGEEPVLLAGSSVANSELDGR-----I 256

Query: 63  DEMKIQLDQ-SAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVET----LEMM 117
           + ++ QLD     +  K  +  A  KRE+ +L+++K+E   AK    +  E      + +
Sbjct: 257 EALEKQLDALRLRYTDKHPDVIA-TKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQL 315

Query: 118 TLDKEMAEERAETLQVELDLAKEKIEEL 145
            ++   AE    +L+  +     +IE L
Sbjct: 316 QIELAEAEAEIASLEARVAELTARIERL 343

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 498

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 41.1 bits (97), Expect = 0.002
 Identities = 51/248 (20%), Positives = 97/248 (39%), Gaps = 30/248 (12%)

Query: 2   KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKI---MESQAASSLFRYREK 58
           +A+ Q+  E+L +++    +K         Q +Q+ +   KI   +    A  + R  E 
Sbjct: 448 QAKEQEATEELLSLE----QKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVAR--EL 501

Query: 59  TRDLDEMKIQLDQSAEFKAKI--MESQAGLKRELEKLKQEKQEAVEAKEDTADLVETL-- 114
            R L E +   +Q  + + ++  +E +   ++  E+L  E  + +    D  D +E L  
Sbjct: 502 LRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQE 561

Query: 115 ------EMMTLDKEMAEERAETLQVELDLAKEKIEELT-LDIELMKAD--IEKSCDGAGD 165
                 E ++     A ER   L+ +L+  + +I+ L       + A   + +  + +G+
Sbjct: 562 ELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGE 621

Query: 166 GTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDS 225
             E S    + ++Q   R RE L   RD  A         D  +  LS          D 
Sbjct: 622 EFEDSQDVTEYMQQLLERERE-LTVERDELAARKQ---ALDEEIERLSQPG----GSEDP 673

Query: 226 RLRDLSAH 233
           RL  L+  
Sbjct: 674 RLNALAER 681

Length = 1486

>gnl|CDD|220404 pfam09789, DUF2353, Uncharacterized coiled-coil protein (DUF2353)

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 9/120 (7%)

Query: 322 DLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEE 381
           D+      +   L + +E+ ++EN +L    ++L+QR  EL+ D   L  Q  A    E 
Sbjct: 58  DMKIKPGTKRQDLSQLLEKYREENQQLSTDVQELRQRKAELQGDI-KLLRQTIAQQRVEF 116

Query: 382 MVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATRE 441
           M   +     E  DLVS+       LE L+    QL+ D + +  E KEEV M R   + 
Sbjct: 117 MGGGVRESFEERNDLVSQ-------LEKLREKCKQLESDLRSLLDE-KEEVLMERDEYQR 168

Members of this family of uncharacterized proteins have no known function. Length = 319

>gnl|CDD|221584 pfam12455, Dynactin, Dynein associated protein

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 492 NSLDEKVSTENIEKCVTYFNTFYPVLFPDTKFSHVGHLLMDYVKILSTASDCLQTDSKII 551
           + LDE    + +++ + YF+       P          L+D + +   A D + ++   +
Sbjct: 177 DELDENECADELQRSIAYFDHLAETHLPGELEDC-ADELLDRLNLTQAALDSVASNLSRL 235

Query: 552 QALIQETMMPCE 563
           + L+Q       
Sbjct: 236 KTLLQSGHAETS 247

This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with pfam01302. There is a single completely conserved residue E that may be functionally important. Dynactin has been associated with Dynein, a kinesin protein which is involved in organelle transport, mitotic spindle assembly and chromosome segregation. Dynactin anchors Dynein to specific subcellular structures. Length = 274

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 40/152 (26%), Positives = 80/152 (52%), Gaps = 15/152 (9%)

Query: 338 IEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLV 397
           IEE ++   EL    E L++ V E+E       E+ +  + AE+ +++L  ++ +LE+L+
Sbjct: 470 IEEDRERVEELEAELEDLEEEVEEVEER----LERAEDLVEAEDRIERLEERREDLEELI 525

Query: 398 SKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSA------TREVIREKEAALE 451
           + +  E ++ +  +   ++L+E A E+E E +E+ E A  A       RE + E  + L 
Sbjct: 526 A-ERRETIEEKRERA--EELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA 582

Query: 452 SLADRELTIVKFRELV--IREKEAALESLADR 481
            L +R  ++ + R L+  I + E  +E L ++
Sbjct: 583 ELKERIESLERIRTLLAAIADAEDEIERLREK 614

Length = 880

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	640
KOG0971|consensus	1243		100.0
PF12455	274	Dynactin: Dynein associated protein ; InterPro: IP	99.93
KOG0971|consensus	1243		99.53
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.39
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.24
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.17
PRK02224	880	chromosome segregation protein; Provisional	98.99
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.93
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.86
PRK02224	880	chromosome segregation protein; Provisional	98.73
PRK03918	880	chromosome segregation protein; Provisional	98.73
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.66
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.58
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.54
KOG4643|consensus	1195		98.49
KOG0161|consensus	1930		98.47
KOG0161|consensus	1930		98.45
PRK03918	880	chromosome segregation protein; Provisional	98.45
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.36
KOG4643|consensus	1195		98.08
KOG0996|consensus	1293		98.01
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.98
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.93
KOG0250|consensus	1074		97.83
PRK04863	1486	mukB cell division protein MukB; Provisional	97.83
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.83
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	97.83
PRK04863	1486	mukB cell division protein MukB; Provisional	97.6
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.56
KOG0933|consensus	1174		97.51
PRK01156	895	chromosome segregation protein; Provisional	97.5
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.42
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.42
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.34
KOG4674|consensus	1822		97.33
PHA02562	562	46 endonuclease subunit; Provisional	97.31
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.31
KOG4674|consensus	1822		97.27
KOG0996|consensus	1293		97.26
PRK04778	569	septation ring formation regulator EzrA; Provision	97.14
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.01
KOG0976|consensus	1265		96.99
KOG0977|consensus	546		96.98
KOG0933|consensus	1174		96.96
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.91
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.89
PRK09039	343	hypothetical protein; Validated	96.84
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.83
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.74
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.6
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.59
PHA02562	562	46 endonuclease subunit; Provisional	96.51
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.48
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	96.48
KOG0995|consensus	581		96.44
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.34
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.32
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.29
PRK01156	895	chromosome segregation protein; Provisional	96.29
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.08
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.03
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	96.03
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.99
KOG0963|consensus	629		95.98
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.96
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	95.94
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.87
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	95.8
PRK04778	569	septation ring formation regulator EzrA; Provision	95.67
KOG0977|consensus	546		95.54
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	95.52
PRK09039	343	hypothetical protein; Validated	95.48
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	95.48
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	95.18
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.17
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.09
PRK10698	222	phage shock protein PspA; Provisional	95.09
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	94.9
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	94.79
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	94.72
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	94.69
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.63
KOG0964|consensus	1200		94.51
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.1
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	94.07
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.01
KOG0980|consensus	980		93.95
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	93.88
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	93.76
COG2433	652	Uncharacterized conserved protein [Function unknow	93.67
PF13514	1111	AAA_27: AAA domain	93.56
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	93.54
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.5
KOG0612|consensus	1317		93.48
KOG0250|consensus	1074		93.42
KOG0994|consensus	1758		93.32
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.14
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	93.1
COG5185	622	HEC1 Protein involved in chromosome segregation, i	93.06
KOG0999|consensus	772		93.02
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	92.97
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	92.95
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	92.85
KOG0980|consensus	980		92.77
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.58
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	92.54
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.36
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	92.31
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	92.2
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	92.05
KOG4593|consensus	716		91.92
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	91.85
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	91.72
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	91.29
COG2433	652	Uncharacterized conserved protein [Function unknow	91.21
PF10186	302	Atg14: UV radiation resistance protein and autopha	90.8
PRK10929	1109	putative mechanosensitive channel protein; Provisi	90.73
PRK10884	206	SH3 domain-containing protein; Provisional	90.5
KOG0612|consensus	1317		90.45
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	90.43
KOG0978|consensus	698		90.38
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	90.21
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	90.13
KOG0963|consensus	629		89.6
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	89.6
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	89.22
PF13514	1111	AAA_27: AAA domain	89.08
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	88.84
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	88.54
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	88.46
KOG0018|consensus	1141		87.99
PRK11281	1113	hypothetical protein; Provisional	87.7
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	87.58
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	87.48
KOG0243|consensus	1041		87.32
KOG2129|consensus	552		87.3
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	87.17
COG5185	622	HEC1 Protein involved in chromosome segregation, i	87.02
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	86.99
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	86.85
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	86.58
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	86.56
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	86.42
PLN02939	977	transferase, transferring glycosyl groups	86.4
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	86.26
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	86.06
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	86.01
KOG0964|consensus	1200		85.95
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	85.72
PF04100	383	Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007	85.67
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	85.62
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	85.34
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	85.28
KOG0979|consensus	1072		84.96
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	84.58
PRK09343	121	prefoldin subunit beta; Provisional	84.56
PRK10884	206	SH3 domain-containing protein; Provisional	84.55
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	84.39
KOG4657|consensus	246		84.3
KOG4302|consensus	660		84.26
COG4942	420	Membrane-bound metallopeptidase [Cell division and	84.21
KOG1029|consensus	1118		84.0
PF10186	302	Atg14: UV radiation resistance protein and autopha	83.88
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	83.81
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	83.75
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	83.47
KOG4809|consensus	654		82.69
KOG0946|consensus	970		82.68
KOG1029|consensus	1118		82.4
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	82.33
PF13166	712	AAA_13: AAA domain	82.29
COG4372	499	Uncharacterized protein conserved in bacteria with	81.89
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	81.62
KOG0804|consensus	493		81.38
KOG0995|consensus	581		81.27
KOG0804|consensus	493		81.26
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	81.14
PRK03947	140	prefoldin subunit alpha; Reviewed	80.51
COG4026	290	Uncharacterized protein containing TOPRIM domain,	80.48
KOG0946|consensus	970		80.45
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	80.04

>KOG0971|consensus

Probab=100.00  E-value=1.3e-100  Score=846.85  Aligned_cols=465  Identities=41%  Similarity=0.608  Sum_probs=447.8

Q ss_pred             ChhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHHHH
Q psy15551          1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIM   80 (640)
Q Consensus         1 ~~~e~~~l~~kl~~~~~k~~ek~~~~~~~~~ql~q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~~~   80 (640)
                      |++++.||.+||++++.||.|                                 |+.|+++||+|+||++|+.|||.+||
T Consensus       229 Lr~QvrdLtEkLetlR~kR~E---------------------------------Dk~Kl~ElekmkiqleqlqEfkSkim  275 (1243)
T KOG0971|consen  229 LRAQVRDLTEKLETLRLKRAE---------------------------------DKAKLKELEKMKIQLEQLQEFKSKIM  275 (1243)
T ss_pred             HHHHHHHHHHHHHHHHhhhhh---------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999                                 99999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q psy15551         81 ESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADI  156 (640)
Q Consensus        81 ~~~~~~~~el~~~k~~~~e~~~~~e----~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~  156 (640)
                      +.|+.||++|...|+++++|+++++    +++|+.+++||+||||||||||||+||.|++.+|+|++||++|+||||+|+
T Consensus       276 ~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEm  355 (1243)
T KOG0971|consen  276 EQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEM  355 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998    789999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhhchhhhhhcccccchhhhhhhhhhhhcccccchhhhhhhhhhhh
Q psy15551        157 EKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIF  236 (640)
Q Consensus       157 e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlRd~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (640)
                      ++   +||+++..|+|++||||+||.|||+|||||||++                                         
T Consensus       356 ee---kG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDls-----------------------------------------  391 (1243)
T KOG0971|consen  356 EE---KGSDGQAASSYQFKQLEQQNARLKDALVRLRDLS-----------------------------------------  391 (1243)
T ss_pred             Hh---cCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcc-----------------------------------------
Confidence            99   5688888999999999999999999999999998                                         


Q ss_pred             ccccccchhhchhhhhhhccccccchhhhhhhhhhhhccccccchhhhhhhhhhhhcccccchhhhhhhhhhhhcccccc
Q psy15551        237 NNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNKNKF  316 (640)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (640)
                                                                                                      
T Consensus       392 --------------------------------------------------------------------------------  391 (1243)
T KOG0971|consen  392 --------------------------------------------------------------------------------  391 (1243)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q psy15551        317 DSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDL  396 (640)
Q Consensus       317 ~~~l~d~~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEK  396 (640)
                              |++|+.+++++|++|.+++|+.+|+...|+|+.++.++|+.|+||+||||||||||+||++||++|++|+++
T Consensus       392 --------A~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEek  463 (1243)
T KOG0971|consen  392 --------ASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEK  463 (1243)
T ss_pred             --------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHH
Confidence                    567899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551        397 VSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALE  476 (640)
Q Consensus       397 IeELEetIeDLEaLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeE  476 (640)
                      |..|+++|.|||++++++++|.|++.+++.+||+|||.....+.++.+++.+..+.+.|+.+||.|||++|++|+.+|++
T Consensus       464 VklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe  543 (1243)
T KOG0971|consen  464 VKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQE  543 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             h---------------ccChhhHHhh--HHhhhhhhhhc-------chHHHHHHHhHhHhhcCCCCCCCCCCchHHHHHH
Q psy15551        477 S---------------LADRELTIVK--FRELNSLDEKV-------STENIEKCVTYFNTFYPVLFPDTKFSHVGHLLMD  532 (640)
Q Consensus       477 L---------------~~~~~~~~~~--~sasKA~~k~I-------EaeqA~~hl~~l~~FLPdsF~~~GGD~DsVl~lL  532 (640)
                      +               +-+++.|++|  |+++||++++|       |+.+|++|++||++||||+|+.+|||||||+++|
T Consensus       544 ~~dq~~Sseees~q~~s~~~et~dyk~~fa~skayaraie~QlrqiEv~~a~rh~~~l~AFmPdsFlrrGGdhDsvLv~l  623 (1243)
T KOG0971|consen  544 LTDQQESSEEESQQPPSVDPETFDYKIKFAESKAYARAIEMQLRQIEVAQANRHMSLLTAFMPDSFLRRGGDHDSVLVLL  623 (1243)
T ss_pred             HHhhhhhhHHHhcCCCCCchhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhhccCCCCcceeehhH
Confidence            5               1358889887  99999999876       8999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhchHHHHHHHHHhhcCCCccc-------------------------hh--hhhhh-------------
Q psy15551        533 YVKILSTASDCLQTDSKIIQALIQETMMPCECY-------------------------SL--FLHSY-------------  572 (640)
Q Consensus       533 lf~RLa~Acd~~~~Ka~Ll~~~I~e~~~~~~~~-------------------------~l--~~~~~-------------  572 (640)
                      +++||+       +|++|+.++++++||+++++                         ||  .||+|             
T Consensus       624 llpRl~-------~K~~lv~s~a~ekFp~v~~~~reavt~ghageqyaf~arllyll~slqaaL~q~e~al~~c~vdvl~  696 (1243)
T KOG0971|consen  624 LLPRLI-------CKAELVRSQAQEKFPLVENCSREAVTRGHAGEQYAFAARLLYLLSSLQAALHQYEHALSQCSVDVLK  696 (1243)
T ss_pred             hHHHHH-------HHHHHHHHHHHhhCCCccccchhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence            999999       99999999999999998776                         11  56666             


Q ss_pred             ------------------------ccccccccchhhHHHHHHHHHHHhhhhcCCCCCCCcCCccccchhhHHhhhhHHHh
Q psy15551        573 ------------------------GNEIGREGSTENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQ  628 (640)
Q Consensus       573 ------------------------~~~l~~~~~~E~FEKI~~YFn~IFsvLFgGG~A~~~~~L~LtD~~dvL~SGIEIiA  628 (640)
                                              +++||+|+++++|.+|+.||++||++|+||..  .+|..++.|.+.+|.+||++|.
T Consensus       697 ka~~~y~emsahEk~lD~~ieLLkk~qlDEntn~e~i~k~l~yfq~m~s~hl~~ql--lde~q~~~d~iasl~A~ld~~~  774 (1243)
T KOG0971|consen  697 KAGSLYPEMSAHEKSLDFLIELLKKDQLDENTNVEPITKALKYFQHLYSIHLAEQL--LDETQQLADHIASLQAALDCMS  774 (1243)
T ss_pred             HHhhccchhhHHHHHHHHHHHHHhhcccccccCcchHHHHHHHHHHHHHHhccccc--hhHHHHHHHHHHHHHHHHHHHh
Confidence                                    89999999999999999999999999999766  7999999999999999999999


Q ss_pred             cchHHHHHHHh
Q psy15551        629 TDSKIIQALIQ  639 (640)
Q Consensus       629 ~~~~~~~~~~~  639 (640)
                      +|++++++|||
T Consensus       775 vnt~r~~~flQ  785 (1243)
T KOG0971|consen  775 VNTGRLRAFLQ  785 (1243)
T ss_pred             hhHHHHHHHHH
Confidence            99999999998

>PF12455 Dynactin: Dynein associated protein ; InterPro: IPR022157 This domain family is found in eukaryotes, and is approximately 280 amino acids in length

Probab=99.93  E-value=2.3e-25  Score=226.98  Aligned_cols=169  Identities=18%  Similarity=0.309  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHHHHHHhh-ccChhhHHhh----HHhhhhhhhhc-------chHHHHHHHhHhHhhcCCCCCCCCCCchHH
Q psy15551        461 VKFRELVIREKEAALES-LADRELTIVK----FRELNSLDEKV-------STENIEKCVTYFNTFYPVLFPDTKFSHVGH  528 (640)
Q Consensus       461 sKFRELV~~LQedLeEL-~~~~~~~~~~----~sasKA~~k~I-------EaeqA~~hl~~l~~FLPdsF~~~GGD~DsV  528 (640)
                      ...|......+++..+. ..+++||+++    ++++|||+|+|       |++||++|++||++|||++|++  ||+|||
T Consensus         3 ed~r~~~~~~e~e~~~~~s~~~~~~~ln~klq~s~sKa~~k~IDlELrklEa~qa~~hl~il~~fLPd~f~~--gD~D~i   80 (274)
T PF12455_consen    3 EDMRASQQSQEEESEDLSSQSRAMMDLNMKLQFSASKAQAKAIDLELRKLEAEQANQHLSILKAFLPDSFFR--GDHDSI   80 (274)
T ss_pred             HHHHHHHHHHHHHHHhhccccchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhc--ccchhH
Confidence            34455555566666655 4788888664    89999999998       8999999999999999999998  999999


Q ss_pred             HHHHHHHHhhhhhhhhhchHHHHHHHHHhhcCCCccc---------------------hh--------------------
Q psy15551        529 LLMDYVKILSTASDCLQTDSKIIQALIQETMMPCECY---------------------SL--------------------  567 (640)
Q Consensus       529 l~lLlf~RLa~Acd~~~~Ka~Ll~~~I~e~~~~~~~~---------------------~l--------------------  567 (640)
                      +++|+|+||+       +||+|++++|+++++..+..                     +.                    
T Consensus        81 l~lLl~~Rl~-------~Ka~Ll~~~i~e~~~~~~~~~~~~~e~~~~~~~~~~~L~~l~~~~~rf~~~l~~Cs~E~f~k~  153 (274)
T PF12455_consen   81 LALLLFKRLA-------FKAELLASQIREKGDREESLKGHVAEQLSFACRLIYKLSWLQALCHRFESALSRCSVEQFLKM  153 (274)
T ss_pred             HHHHHHHHHH-------HHHHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence            9999999999       99999999999994221111                     00                    


Q ss_pred             ------------hhhhh-----ccccccccchhhHHHHHHHHHHHhhhhcCCCCCCCcCCccccchhhHHhhhhHHHhcc
Q psy15551        568 ------------FLHSY-----GNEIGREGSTENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQTD  630 (640)
Q Consensus       568 ------------~~~~~-----~~~l~~~~~~E~FEKI~~YFn~IFsvLFgGG~A~~~~~L~LtD~~dvL~SGIEIiA~~  630 (640)
                                  .|++|     +|+||++++++++++++.||+++|.+||+|..  .+|...+.+...++.+|+++++++
T Consensus       154 g~~~~Em~~~Er~lD~~IdlLk~d~LdE~~~~~~L~r~i~~~~~l~~~~~~~~~--~d~~~~~~~~~~~~~~~ld~~~~~  231 (274)
T PF12455_consen  154 GGLYPEMEPVERALDSWIDLLKKDQLDENTCADELERSIAYFSHLAEVHLPEEL--EDCADELLDRASLLQSALDSMAAN  231 (274)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHcCCcc--cCHHHHHHHHHHHHHHHHHHHHHH
Confidence                        22333     99999999999999999999999999999666  689999999999999999999999


Q ss_pred             hHHHHHHHhC
Q psy15551        631 SKIIQALIQR  640 (640)
Q Consensus       631 ~~~~~~~~~~  640 (640)
                      ..++++++|.
T Consensus       232 ~~~l~~~lq~  241 (274)
T PF12455_consen  232 LARLKTLLQS  241 (274)
T ss_pred             HHHHHHHHhc
Confidence            9999999873

The family is found in association with PF01302 from PFAM. There is a single completely conserved residue E that may be functionally important. Dynactin has been associated with Dynein, a kinesin protein which is involved in organelle transport, mitotic spindle assembly and chromosome segregation. Dynactin anchors Dynein to specific subcellular structures.

>KOG0971|consensus

Probab=99.53  E-value=3.7e-09  Score=121.17  Aligned_cols=118  Identities=32%  Similarity=0.457  Sum_probs=99.4

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHhhhhHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy15551         10 EKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRE   89 (640)
Q Consensus        10 ~kl~~~~~k~~ek~~~~~~~~~ql~q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~e   89 (640)
                      +-|+.-+...+.|++|+|+|+|||+|++|||+|||++|+.        --|+|-+-+++..+..+++.+.+...++.+.-
T Consensus       241 etlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~--------Lqrel~raR~e~keaqe~ke~~k~emad~ad~  312 (1243)
T KOG0971|consen  241 ETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQAD--------LQRELKRARKEAKEAQEAKERYKEEMADTADA  312 (1243)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466668888999999999999999999999999999999        78999999999999999999988888888766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551         90 LEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEEL  145 (640)
Q Consensus        90 l~~~k~~~~e~~~~~e~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel  145 (640)
                      ++-+--++        ++|  +|..|-...|-||+.||.+.|.++|+.+|..+++-
T Consensus       313 iEmaTldK--------EmA--EERaesLQ~eve~lkEr~deletdlEILKaEmeek  358 (1243)
T KOG0971|consen  313 IEMATLDK--------EMA--EERAESLQQEVEALKERVDELETDLEILKAEMEEK  358 (1243)
T ss_pred             HHHHHhhH--------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            64444333        222  45666667788999999999999999999999874

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.39  E-value=3.3e-09  Score=126.58  Aligned_cols=49  Identities=20%  Similarity=0.234  Sum_probs=43.9

Q ss_pred             cccchhhHHHHHHHHHHHhhhhcCCCCCCCcCCccccchhhHHhhhhHHHhcc
Q psy15551        578 REGSTENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQTD  630 (640)
Q Consensus       578 ~~~~~E~FEKI~~YFn~IFsvLFgGG~A~~~~~L~LtD~~dvL~SGIEIiA~~  630 (640)
                      .+.-.++|..|+..|+.||+.+||||.|    .|.|++|+++|++||+|.+.-
T Consensus      1008 ~~~f~~~f~~In~~F~~if~~L~~GG~a----~L~l~~~dd~l~~Giei~a~p 1056 (1163)
T COG1196        1008 RERFKETFDKINENFSEIFKELFGGGTA----ELELTEPDDPLTAGIEISARP 1056 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCee----EEEeCCCCchhhcCcEEEEEC
Confidence            3444678999999999999999999998    999999999999999998753

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.24  E-value=4.7e-06  Score=97.26  Aligned_cols=46  Identities=15%  Similarity=0.099  Sum_probs=39.9

Q ss_pred             cchhhHHHHHHHHHHHhhhhcCCCCCCCcCCccccchhhHHhhhhHHHhcc
Q psy15551        580 GSTENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQTD  630 (640)
Q Consensus       580 ~~~E~FEKI~~YFn~IFsvLFgGG~A~~~~~L~LtD~~dvL~SGIEIiA~~  630 (640)
                      .-..+|..++.+|+.+|+.+| ||.|    .+.+.+|++.+.+|+++.+..
T Consensus      1019 ~f~~~f~~~~~~f~~~~~~l~-~~~~----~l~~~~~~~~~~~~~~~~~~~ 1064 (1164)
T TIGR02169      1019 VFMEAFEAINENFNEIFAELS-GGTG----ELILENPDDPFAGGLELSAKP 1064 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCeE----EEEecCCCCcccCCeEEEEEc
Confidence            345679999999999999999 7877    899999888899999988764

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.17  E-value=1.5e-06  Score=100.75  Aligned_cols=46  Identities=17%  Similarity=0.282  Sum_probs=36.1

Q ss_pred             hhhHHHHHHHHHHHhhhhcC----CCCCCCcCCccccchhhHHhhhhHHHhcch
Q psy15551        582 TENIEKCVTYFNTFYPVLFP----GHPSFSSCGSLLMDYVKILSTACDCLQTDS  631 (640)
Q Consensus       582 ~E~FEKI~~YFn~IFsvLFg----GG~A~~~~~L~LtD~~dvL~SGIEIiA~~~  631 (640)
                      .++|..|+.+|+.+|+.+|+    ||.|    .+.+.||++++..|+.+.+...
T Consensus      1031 ~~~F~~v~~~f~~~F~~lf~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 1080 (1179)
T TIGR02168      1031 RERFKDTFDQVNENFQRVFPKLFGGGEA----ELRLTDPEDLLEAGIEIFAQPP 1080 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCeE----EEEeCCCCcccccCceEEEeCC
Confidence            46788898888888877775    7777    7778788888899988776653

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK02224 chromosome segregation protein; Provisional

Probab=98.99  E-value=0.00022  Score=82.73  Aligned_cols=34  Identities=26%  Similarity=0.264  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q psy15551        122 EMAEERAETLQVELDLAKEKIEELTLDIELMKAD  155 (640)
Q Consensus       122 emaee~~e~l~~el~~~k~k~eel~le~e~lk~e  155 (640)
                      +=++.+.+.++.+++.+++++.+++..+..++..
T Consensus       408 ~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~  441 (880)
T PRK02224        408 GNAEDFLEELREERDELREREAELEATLRTARER  441 (880)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667777777777777777766655555443

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.93  E-value=0.00035  Score=81.42  Aligned_cols=22  Identities=18%  Similarity=0.406  Sum_probs=9.7

Q ss_pred             cccccccchhhHHHHHHHHHHH
Q psy15551        574 NEIGREGSTENIEKCVTYFNTF  595 (640)
Q Consensus       574 ~~l~~~~~~E~FEKI~~YFn~I  595 (640)
                      |+.+...+..+...+..++..+
T Consensus      1118 DE~~~~ld~~~~~~~~~~~~~~ 1139 (1179)
T TIGR02168      1118 DEVDAPLDDANVERFANLLKEF 1139 (1179)
T ss_pred             cCccccccHHHHHHHHHHHHHh
Confidence            3333344444445554444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.86  E-value=0.00024  Score=83.31  Aligned_cols=18  Identities=17%  Similarity=0.466  Sum_probs=13.0

Q ss_pred             chHHHHHHHhHhH-------hhcCC
Q psy15551        499 STENIEKCVTYFN-------TFYPV  516 (640)
Q Consensus       499 EaeqA~~hl~~l~-------~FLPd  516 (640)
                      ..+-|..++.|++       .|+|-
T Consensus       556 ~~~~a~~~i~~l~~~~~gr~tflpl  580 (1164)
T TIGR02169       556 DDAVAKEAIELLKRRKAGRATFLPL  580 (1164)
T ss_pred             CHHHHHHHHHHHHhcCCCCeeeccH
Confidence            4566888888886       57774

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=98.73  E-value=0.00059  Score=79.29  Aligned_cols=79  Identities=19%  Similarity=0.293  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q psy15551        336 KDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL----GAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-AL  410 (640)
Q Consensus       336 ~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~----gAEEMVEELTEKNleLEEKIeELEetIeDLE-aL  410 (640)
                      .++..+..+...+....+.+...+..++..+.++..+|..+.    .++..++++..+...+.+++.+++..+..++ .+
T Consensus       363 ~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l  442 (880)
T PRK02224        363 EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERV  442 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444444444444444444444444322    2234445555555555555555555555544 44


Q ss_pred             HHHH
Q psy15551        411 QVVS  414 (640)
Q Consensus       411 kELn  414 (640)
                      ..+.
T Consensus       443 ~~~~  446 (880)
T PRK02224        443 EEAE  446 (880)
T ss_pred             HHHH
Confidence            4443

>PRK03918 chromosome segregation protein; Provisional

Probab=98.73  E-value=0.0015  Score=75.65  Aligned_cols=53  Identities=19%  Similarity=0.341  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        355 LKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDL  407 (640)
Q Consensus       355 l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDL  407 (640)
                      ++.++..++..+.+|...+.....+...+..+..+..++..++.+++..+.+|
T Consensus       530 l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  582 (880)
T PRK03918        530 LKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEEL  582 (880)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33333444444444444444333344444444444444444444444444433

>TIGR00606 rad50 rad50

Probab=98.66  E-value=0.0015  Score=79.91  Aligned_cols=25  Identities=16%  Similarity=0.284  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcHHHHHH
Q psy15551        360 TELEADCADLHEQVDAALGAEEMVQ  384 (640)
Q Consensus       360 ~~~e~~~~~l~~q~d~a~gAEEMVE  384 (640)
                      ..+...+..++..++..-++...|.
T Consensus       937 ~~~~~~~~~~~~~~~~~~~~~~~i~  961 (1311)
T TIGR00606       937 KKAQDKVNDIKEKVKNIHGYMKDIE  961 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555554444444443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.58  E-value=0.00096  Score=75.25  Aligned_cols=147  Identities=22%  Similarity=0.225  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy15551        331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQV-DAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-  408 (640)
Q Consensus       331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~-d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-  408 (640)
                      ++..+....-+..+++++....++....|..+--++++|+-|+ |+.+.+.+.-.+.......|...++..+..|.+|. 
T Consensus       299 lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~  378 (546)
T PF07888_consen  299 LQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSR  378 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            4444566667777788888888888888888888899999888 55566666666777777777777777777788887 


Q ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551        409 ALQVVSDQLQEDAKEIE---IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALES  477 (640)
Q Consensus       409 aLkELnDELEEnhvE~E---KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL  477 (640)
                      .+..+.+-|.+-..+-.   ++|..+-|....++.+..+.+..++..+.-.+..-.++++.-+.|-..+..+
T Consensus       379 el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~L  450 (546)
T PF07888_consen  379 ELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERL  450 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777766555544   7888888888889999999999988877766666666666666666655544

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR00606 rad50 rad50

Probab=98.54  E-value=0.0031  Score=77.28  Aligned_cols=40  Identities=18%  Similarity=0.194  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHHHHHHHHH
Q psy15551          6 QDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIME   45 (640)
Q Consensus         6 ~~l~~kl~~~~~k~~ek~~~~~~~~~ql~q~~~~k~k~~e   45 (640)
                      .+|..+++++-.+-.+.-+.+.+.+..++++...+..+..
T Consensus       698 ~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~  737 (1311)
T TIGR00606       698 SDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQS  737 (1311)
T ss_pred             HHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            3445555554333444456667777777777766654443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4643|consensus

Probab=98.49  E-value=0.0024  Score=75.71  Aligned_cols=193  Identities=24%  Similarity=0.330  Sum_probs=132.4

Q ss_pred             ChhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhH-HHHHHHHHHHhh----hhhhhhHHHHhhHHHHHHHHHhHHHH
Q psy15551          1 MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSA-EFKAKIMESQAA----SSLFRYREKTRDLDEMKIQLDQSAEF   75 (640)
Q Consensus         1 ~~~e~~~l~~kl~~~~~k~~ek~~~~~~~~~ql~q~~-~~k~k~~e~~~~----~~~~~d~~k~~~l~~~~~~~~~~~~~   75 (640)
                      |.-++-|+++|+++|++.-.||.--+..|+-.|+++. +|+..=+|++--    -+.-+||.++..+-.-..-.+  ..|
T Consensus       175 L~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d--~~y  252 (1195)
T KOG4643|consen  175 LEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPD--TTY  252 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCC--Ccc
Confidence            3567899999999999999999999999999999884 677766665532    223345555554444333333  568


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHhhhH
Q psy15551         76 KAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEMMTLDKEMAE--ERAETLQVELDLAKEKIEELTLDI  149 (640)
Q Consensus        76 k~~~~~~~~~~~~el~~~k~~~~e~~~~~e----~~~d~~~~lem~tldkemae--e~~e~l~~el~~~k~k~eel~le~  149 (640)
                      |.++|++- -++..+++||+..+-+.+.++    .+.-+...-|-+|+.+|+..  -+...++.+.+..+-++++|-.|.
T Consensus       253 kerlmDs~-fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEn  331 (1195)
T KOG4643|consen  253 KERLMDSD-FYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEEN  331 (1195)
T ss_pred             chhhhhhH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            88888872 245556666776666665555    55556666666888888865  456788899999999999999888


Q ss_pred             HHHHHhhhhhcCC--------CCCCCCcchHHHHHHHHHHHHHHHHHHHhhhchh
Q psy15551        150 ELMKADIEKSCDG--------AGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSA  196 (640)
Q Consensus       150 e~lk~e~e~~~~~--------~~~~~~~~~~~~~qle~qN~rLreaLvrlRd~s~  196 (640)
                      -.|.-..+....+        .....+..+.+..+.+-.+.|+-..|+.=|.++.
T Consensus       332 stLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~  386 (1195)
T KOG4643|consen  332 STLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTG  386 (1195)
T ss_pred             HHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHH
Confidence            8876655443322        1123456677777666666777777776666653

>KOG0161|consensus

Probab=98.47  E-value=0.0034  Score=79.21  Aligned_cols=94  Identities=19%  Similarity=0.311  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH--------HHHHHHHHH
Q psy15551        327 EKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQ--------KLELEDLVS  398 (640)
Q Consensus       327 ~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEK--------NleLEEKIe  398 (640)
                      ....++.|+..+.++..+...-..+..|++.....+...+++|+++++...|.-.+..+++.+        +..|++...
T Consensus      1095 l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~ 1174 (1930)
T KOG0161|consen 1095 LQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETL 1174 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666666666777777777788888888999999999999999998887777665544        334555555


Q ss_pred             HHHHHHHHHH-----HHHHHHHHHHHH
Q psy15551        399 KQAEEIVDLE-----ALQVVSDQLQED  420 (640)
Q Consensus       399 ELEetIeDLE-----aLkELnDELEEn  420 (640)
                      ..+.++.++.     .+.++.++++..
T Consensus      1175 ~~e~~~~~lr~~~~~~~~el~~qle~l 1201 (1930)
T KOG0161|consen 1175 DHEAQIEELRKKHADSLAELQEQLEQL 1201 (1930)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566665554     345555555443

>KOG0161|consensus

Probab=98.45  E-value=0.0051  Score=77.73  Aligned_cols=150  Identities=20%  Similarity=0.263  Sum_probs=88.8

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhh----hhHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHH
Q psy15551          3 AEIQDLKEKLDTMKIKYREKTRDLDEMKIQLD----QSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAK   78 (640)
Q Consensus         3 ~e~~~l~~kl~~~~~k~~ek~~~~~~~~~ql~----q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~   78 (640)
                      ..+.|+...|+--+..|.+--|..+|+..+|.    +..+++.++-+-+.+     .+-|--++-.+..+++......+.
T Consensus      1020 ~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~-----l~kke~El~~l~~k~e~e~~~~~~ 1094 (1930)
T KOG0161|consen 1020 QQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQ-----LKKKESELSQLQSKLEDEQAEVAQ 1094 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhHHHHHHHH
Confidence            45677777777777778777777778777773    334455555565555     566667777788888777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q psy15551         79 IMESQAGLKRELEKLKQEKQEAVEAKE-----------DTADLVETLEMMTLDKEMA-EERAETLQVELDLAKEKIEELT  146 (640)
Q Consensus        79 ~~~~~~~~~~el~~~k~~~~e~~~~~e-----------~~~d~~~~lem~tldkema-ee~~e~l~~el~~~k~k~eel~  146 (640)
                      ++....+|++.+.++..++..-.....           ++.++.+.|+-. ++.--| .+-.-....|+..++..+++-+
T Consensus      1095 l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~-~~~t~~q~e~~~k~e~e~~~l~~~leee~ 1173 (1930)
T KOG0161|consen 1095 LQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ-GGTTAAQLELNKKREAEVQKLRRDLEEET 1173 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777666666554332222           233333334333 111111 1222223345666666666666


Q ss_pred             hhHHHHHHhhhh
Q psy15551        147 LDIELMKADIEK  158 (640)
Q Consensus       147 le~e~lk~e~e~  158 (640)
                      ++.+-..+++..
T Consensus      1174 ~~~e~~~~~lr~ 1185 (1930)
T KOG0161|consen 1174 LDHEAQIEELRK 1185 (1930)
T ss_pred             HhHHHHHHHHHH
Confidence            666665555554

>PRK03918 chromosome segregation protein; Provisional

Probab=98.45  E-value=0.008  Score=69.79  Aligned_cols=20  Identities=35%  Similarity=0.479  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy15551         86 LKRELEKLKQEKQEAVEAKE  105 (640)
Q Consensus        86 ~~~el~~~k~~~~e~~~~~e  105 (640)
                      ++.++.+++.++.++.....
T Consensus       264 l~~el~~l~~~l~~l~~~~~  283 (880)
T PRK03918        264 LEERIEELKKEIEELEEKVK  283 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444333333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.36  E-value=0.0084  Score=72.86  Aligned_cols=82  Identities=29%  Similarity=0.441  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy15551         77 AKIMESQAGLKRELEKLKQEKQEAVEAKE---------------DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEK  141 (640)
Q Consensus        77 ~~~~~~~~~~~~el~~~k~~~~e~~~~~e---------------~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k  141 (640)
                      .++.....++.+++..|+++...+....+               ++..+...++-.+=+-..+++..+.++..+.....+
T Consensus       189 ~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~  268 (1163)
T COG1196         189 ERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKE  268 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33555666666677777766666654433               222333334444444445555555556666666666


Q ss_pred             HHHHhhhHHHHHHhhhh
Q psy15551        142 IEELTLDIELMKADIEK  158 (640)
Q Consensus       142 ~eel~le~e~lk~e~e~  158 (640)
                      |+.+..+++-+++++..
T Consensus       269 i~~~~~~~~e~~~~~~~  285 (1163)
T COG1196         269 IEELKSELEELREELEE  285 (1163)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66666666655555544

>KOG4643|consensus

Probab=98.08  E-value=0.052  Score=64.95  Aligned_cols=155  Identities=21%  Similarity=0.269  Sum_probs=98.6

Q ss_pred             HHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy15551         42 KIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDK  121 (640)
Q Consensus        42 k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e~~~d~~~~lem~tldk  121 (640)
                      +++-.++...--+|++++-|++.+|.+++.+.+--+-+.+.-..|+.+|+.++..-.- +.-.-++--+...+--|...+
T Consensus       239 dalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-~tleseiiqlkqkl~dm~~er  317 (1195)
T KOG4643|consen  239 DALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-ATLESEIIQLKQKLDDMRSER  317 (1195)
T ss_pred             HHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHhh
Confidence            3444444444467999999999999999998887777888878888888888776533 111112222333333333444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--hhhhhcCCC--CCCCCcchHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy15551        122 EMAEERAETLQVELDLAKEKIEELTLDIELMKA--DIEKSCDGA--GDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAH  197 (640)
Q Consensus       122 emaee~~e~l~~el~~~k~k~eel~le~e~lk~--e~e~~~~~~--~~~~~~~~~~~~qle~qN~rLreaLvrlRd~s~~  197 (640)
                      -|-.-+.+.|.+|.-.+.-.-+-|....++++.  ++++.|..+  .-...-++....-++-+|.|+-.||--++--+-+
T Consensus       318 dtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~E  397 (1195)
T KOG4643|consen  318 DTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYE  397 (1195)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHH
Confidence            455566667777777776666777777777765  333333331  1112234445566788999999999988876643

>KOG0996|consensus

Probab=98.01  E-value=0.022  Score=68.75  Aligned_cols=257  Identities=16%  Similarity=0.156  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy15551        330 EMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-  408 (640)
Q Consensus       330 ~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-  408 (640)
                      ++.++..++......+..-.....+....+.+++..|.++..-          ++.|++....+.++..+++.++.+-+ 
T Consensus       915 ~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e----------~~~L~e~~~~~~~k~~E~~~~~~e~~~  984 (1293)
T KOG0996|consen  915 QLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKE----------LDDLTEELKGLEEKAAELEKEYKEAEE  984 (1293)
T ss_pred             HHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            3444444444433333333334445556667777777666554          44577777777888888888888888 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhH--Hh
Q psy15551        409 ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELT--IV  486 (640)
Q Consensus       409 aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL~~~~~~~--~~  486 (640)
                      .+.++++++.....+++.--+.+.+.+...|. +..++++....+...+..|..+......+.---  +...+++.  ++
T Consensus       985 ~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId-~~~K~e~~~~~l~e~~~~~~~~~k~~~~l~~~~--~tE~~~~~~~~~ 1061 (1293)
T KOG0996|consen  985 SLKEIKKELRDLKSELENIKKSENELKAERID-IENKLEAINGELNEIESKIKQPEKELKKLSLCN--MTETRPQIELDV 1061 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHhhhhhHHHhhCcccccc--chhhcccccccc
Confidence            88888888888777777555555555555666 777777888888888888887773332221100  00001110  00


Q ss_pred             h---HHhhhhhhhhcc--hHHHHHHHhHhHhhcCCCCCCCCCCchHHH-----HHHHHHHhhhhhhhhhchHHHHHHHHH
Q psy15551        487 K---FRELNSLDEKVS--TENIEKCVTYFNTFYPVLFPDTKFSHVGHL-----LMDYVKILSTASDCLQTDSKIIQALIQ  556 (640)
Q Consensus       487 ~---~sasKA~~k~IE--aeqA~~hl~~l~~FLPdsF~~~GGD~DsVl-----~lLlf~RLa~Acd~~~~Ka~Ll~~~I~  556 (640)
                      .   -..+.-....|.  ..-++..+.=++        .  .|.++|-     +-++..|+. -++..+.|-+    -.+
T Consensus      1062 ~~~Eeleae~~~~~i~e~i~~lE~~~~~l~--------~--vd~~~i~eY~~k~~~y~~rv~-~l~~~t~kr~----~~r 1126 (1293)
T KOG0996|consen 1062 ESPEELEAEMLEDNINEKIALLEKRVEELR--------E--VDLGVIAEYAKKVELYLKRVA-ELEKFTQKRD----EHR 1126 (1293)
T ss_pred             CChHHHHhhhcHhhHHHHHHHHHHHHHHhc--------C--CChHHHHHHHHHHHHHHHHHH-HHHHHHHHHH----HHH
Confidence            0   000000000010  011111111111        2  2444443     334555655 1111111111    111


Q ss_pred             hhcCCCccchhhhhhhccccccccchhhHHHHHHHHHHHhhhhcCCCCCCCcCCccccchhhHHhhhhHHHhc
Q psy15551        557 ETMMPCECYSLFLHSYGNEIGREGSTENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQT  629 (640)
Q Consensus       557 e~~~~~~~~~l~~~~~~~~l~~~~~~E~FEKI~~YFn~IFsvLFgGG~A~~~~~L~LtD~~dvL~SGIEIiA~  629 (640)
                      +.+..-       .  .-+|||-  ..+|.-|......||.++.-||.|    .|.|.|..|+.+.||-..+-
T Consensus      1127 e~l~~L-------r--k~RldEF--m~gf~~Is~kLkemYQmIT~GGdA----eLElVDslDPFseGV~FSVr 1184 (1293)
T KOG0996|consen 1127 EKLEEL-------R--KRRLDEF--MAGFNIISMKLKEMYQMITLGGDA----ELELVDSLDPFSEGVMFSVR 1184 (1293)
T ss_pred             HHHHHH-------H--HHHHHHH--HHHHHHHHHHHHHHHHHHhcCCcc----eeEeeccCCCcccCceEEee
Confidence            111110       0  2234443  468999999999999999999999    99999999999999866543

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.98  E-value=0.03  Score=57.74  Aligned_cols=90  Identities=21%  Similarity=0.242  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHH
Q psy15551        106 DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLR  185 (640)
Q Consensus       106 ~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLr  185 (640)
                      ++.++...|.-++.++--++-....++.+++.++.++++..-....+..++......    -+..+..-..|+.+...|+
T Consensus        55 el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~----ld~~~~~r~~le~~i~~L~  130 (312)
T PF00038_consen   55 ELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKD----LDEETLARVDLENQIQSLK  130 (312)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----hhhhhhhHhHHHHHHHHHH
Confidence            444555555555555555555666666666666666665555544444444443311    0124555677999999999


Q ss_pred             HHHHHhhhchhhhh
Q psy15551        186 ETLVRLRDLSAHEI  199 (640)
Q Consensus       186 eaLvrlRd~s~~~~  199 (640)
                      +-|-.++.+-.+++
T Consensus       131 eEl~fl~~~heeEi  144 (312)
T PF00038_consen  131 EELEFLKQNHEEEI  144 (312)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhh
Confidence            99999998876543

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.93  E-value=0.13  Score=63.27  Aligned_cols=24  Identities=17%  Similarity=0.169  Sum_probs=16.5

Q ss_pred             hhhHHHHHHHHHHHhhhhcCCCCC
Q psy15551        582 TENIEKCVTYFNTFYPVLFPGHPS  605 (640)
Q Consensus       582 ~E~FEKI~~YFn~IFsvLFgGG~A  605 (640)
                      ...+.+.+..|..+|+.+.|++.+
T Consensus       915 ~~~l~~~~~~f~~~l~~~~~~~~~  938 (1201)
T PF12128_consen  915 REELKKAVERFKGVLTKHSGSELA  938 (1201)
T ss_pred             HHHHHHHHHHHHHHHHhccccchH
Confidence            345777777888887777766553

>KOG0250|consensus

Probab=97.83  E-value=0.14  Score=61.99  Aligned_cols=134  Identities=25%  Similarity=0.311  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q psy15551        332 SKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-AL  410 (640)
Q Consensus       332 ~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aL  410 (640)
                      ..+..+..+.+.+..+...+..+++..+..++.+|+++++|++         ..++.+..+.+.+++.|+.+|+.++ .+
T Consensus       347 ~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~---------~~~~~~~~e~e~k~~~L~~evek~e~~~  417 (1074)
T KOG0250|consen  347 DDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTN---------NELGSELEERENKLEQLKKEVEKLEEQI  417 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444455555666667777888889999999999999984         4556666677777777777777777 66


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q psy15551        411 QVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELT----IVKFRELVIREKEAAL  475 (640)
Q Consensus       411 kELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~T----IsKFRELV~~LQedLe  475 (640)
                      ..+.+++++.+... ...+++.......|..+.+.|......|.++..+    ++.|-..+..+=..|.
T Consensus       418 ~~L~~e~~~~~~~~-~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~  485 (1074)
T KOG0250|consen  418 NSLREELNEVKEKA-KEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFGPNMPQLLRAIE  485 (1074)
T ss_pred             HHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcchhhHHHHHHHH
Confidence            67777777665544 5567788888888899999999988888887654    5566666666555554

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.83  E-value=0.21  Score=62.79  Aligned_cols=60  Identities=22%  Similarity=0.305  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHhh-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q psy15551        363 EADCADLHEQVDAAL-GAEEMVQQLSVQKLELEDLVSKQAEEIVDLE----ALQVVSDQLQEDAK  422 (640)
Q Consensus       363 e~~~~~l~~q~d~a~-gAEEMVEELTEKNleLEEKIeELEetIeDLE----aLkELnDELEEnhv  422 (640)
                      +..+..|.++.++.+ ++++.++++.++...+..+.++|...|..++    +-...++.|....-
T Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~L~e  617 (1486)
T PRK04863        553 EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLRE  617 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHHHHH
Confidence            445555566666555 6666777777777888888888888888777    33444455544433

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.83  E-value=0.14  Score=60.59  Aligned_cols=28  Identities=11%  Similarity=0.098  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551        450 LESLADRELTIVKFRELVIREKEAALES  477 (640)
Q Consensus       450 eEqLEDlE~TIsKFRELV~~LQedLeEL  477 (640)
                      .+.++.+...+..++..+..++.+|.+.
T Consensus       464 ~Eele~~~~e~~~lk~~~~~LQ~eLsEk  491 (775)
T PF10174_consen  464 QEELETYQKELKELKAKLESLQKELSEK  491 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            4566667777777777777777776643

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=97.83  E-value=0.13  Score=60.28  Aligned_cols=114  Identities=22%  Similarity=0.376  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q psy15551         37 AEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLVE  112 (640)
Q Consensus        37 ~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e----~~~d~~~  112 (640)
                      +.+..+|.+-+..     -+..-.++...+.+.+.+...-..+.+....+..+...+|.+++|+..+.-    ++++|++
T Consensus        30 ~~~~~~i~~l~~e-----lk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEe  104 (717)
T PF09730_consen   30 AYLQQRILELENE-----LKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEE  104 (717)
T ss_pred             HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            3466677777777     555667888999999998888888888888899999999999999876655    6666654


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhh
Q psy15551        113 TLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKS  159 (640)
Q Consensus       113 ~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~  159 (640)
                        |-.+|-|-+.-  .-.-|+|.+.+|-.|.-|+-|+++|+..+++.
T Consensus       105 --ENislQKqvs~--Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~  147 (717)
T PF09730_consen  105 --ENISLQKQVSV--LKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA  147 (717)
T ss_pred             --HHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              45566666653  34568999999999999999999999887773

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.60  E-value=0.45  Score=60.00  Aligned_cols=98  Identities=11%  Similarity=0.115  Sum_probs=52.1

Q ss_pred             hHHHHHHHhHhHhhcCCCCCCCCCCchHHHH----HHHHHHhhhhhhhhhchHHHHHHHHHhhcCCCccchhhhhh----
Q psy15551        500 TENIEKCVTYFNTFYPVLFPDTKFSHVGHLL----MDYVKILSTASDCLQTDSKIIQALIQETMMPCECYSLFLHS----  571 (640)
Q Consensus       500 aeqA~~hl~~l~~FLPdsF~~~GGD~DsVl~----lLlf~RLa~Acd~~~~Ka~Ll~~~I~e~~~~~~~~~l~~~~----  571 (640)
                      --+|...+..|..+-|+.|.++   ..|..+    +...+-+...-+..+.+-..+...+.....+..|....|..    
T Consensus       605 W~~a~~al~~L~eq~g~~~~~~---~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~~~~~g~~~~l~~~~~~  681 (1486)
T PRK04863        605 WLAAQDALARLREQSGEEFEDS---QDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQPGGSEDPRLNALAER  681 (1486)
T ss_pred             HHhhHHHHHHHHHhcchhhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccHHHHHHHHh
Confidence            5667777888999999888753   222222    11111122233444466667778887777666665443333    


Q ss_pred             hccccccccchhhHHHHHHHHHHHhhhhcCCCC
Q psy15551        572 YGNEIGREGSTENIEKCVTYFNTFYPVLFPGHP  604 (640)
Q Consensus       572 ~~~~l~~~~~~E~FEKI~~YFn~IFsvLFgGG~  604 (640)
                      +++-+    -.+-|.-|-.-+...++..+||..
T Consensus       682 ~~Gvl----vsel~~~v~~~~~~~~~A~lg~~~  710 (1486)
T PRK04863        682 FGGVL----LSEIYDDVSLEDAPYFSALYGPAR  710 (1486)
T ss_pred             cCCee----hhHhhhccCcchHHHHHHHHHhhh
Confidence            34433    344455333333344555555443

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.56  E-value=0.24  Score=55.90  Aligned_cols=49  Identities=29%  Similarity=0.299  Sum_probs=30.3

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhh
Q psy15551        110 LVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEK  158 (640)
Q Consensus       110 ~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~  158 (640)
                      +...+.++.=-|--|.-+++....-......++++|+.+|.-+|+.++.
T Consensus       142 lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~  190 (522)
T PF05701_consen  142 LRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLES  190 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334434456666666666666777777777777777777666654

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0933|consensus

Probab=97.51  E-value=0.44  Score=57.54  Aligned_cols=66  Identities=27%  Similarity=0.360  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhHH
Q psy15551         85 GLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAET-----LQVELDLAKEKIEELTLDIE  150 (640)
Q Consensus        85 ~~~~el~~~k~~~~e~~~~~e~~~d~~~~lem~tldkemaee~~e~-----l~~el~~~k~k~eel~le~e  150 (640)
                      ..|++|..+.++++..........++...|++.+=+--|++.|+++     +..+++.+++.+++++.+|.
T Consensus       688 ~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ik  758 (1174)
T KOG0933|consen  688 AIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIK  758 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHH
Confidence            3467888888999998888889999999999999888888888874     44555555555555554443

>PRK01156 chromosome segregation protein; Provisional

Probab=97.50  E-value=0.38  Score=56.79  Aligned_cols=37  Identities=16%  Similarity=0.257  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q psy15551        121 KEMAEERAETLQVELDLAKEKIEELTLDIELMKADIE  157 (640)
Q Consensus       121 kemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e  157 (640)
                      .|.-.+-......++..+..++++|.-+++.++.++.
T Consensus       464 ~e~~~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~  500 (895)
T PRK01156        464 EEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIV  500 (895)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333445555555555555555555555554443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.42  E-value=0.2  Score=51.72  Aligned_cols=143  Identities=30%  Similarity=0.460  Sum_probs=89.1

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhh-hhHHHHHHHHHHHhhhhhhhhHH-HHhhHHHHHHHHHhHHHHHHHH
Q psy15551          2 KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLD-QSAEFKAKIMESQAASSLFRYRE-KTRDLDEMKIQLDQSAEFKAKI   79 (640)
Q Consensus         2 ~~e~~~l~~kl~~~~~k~~ek~~~~~~~~~ql~-q~~~~k~k~~e~~~~~~~~~d~~-k~~~l~~~~~~~~~~~~~k~~~   79 (640)
                      |.+++.|..+|-.    |-+|.+.|+.-.-.|. ++..|+.+--..-+     +++. =-.++..++.+++....=++++
T Consensus         3 K~eL~~LNdRla~----YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~-----~~~~~ye~el~~lr~~id~~~~eka~l   73 (312)
T PF00038_consen    3 KEELQSLNDRLAS----YIEKVRFLEQENKRLESEIEELREKKGEEVS-----RIKEMYEEELRELRRQIDDLSKEKARL   73 (312)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---------H-----HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHhcccccCc-----ccccchhhHHHHhHHhhhhHHHHhhHH
Confidence            3466677766643    4455555544333332 23333333111100     0111 2346677778888888889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q psy15551         80 MESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKAD  155 (640)
Q Consensus        80 ~~~~~~~~~el~~~k~~~~e~~~~~e----~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e  155 (640)
                      .-....++.++..++....+......    ++..+...++-.|+-+--.+.++++|+.|++-++.-.++   ++..|+..
T Consensus        74 ~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~hee---Ei~~L~~~  150 (312)
T PF00038_consen   74 ELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEE---EIEELREQ  150 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTSTT
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhh---hhhhhhhc
Confidence            99999999999999988887765444    667778888888888888888888888888887765543   44444443


Q ss_pred             h
Q psy15551        156 I  156 (640)
Q Consensus       156 ~  156 (640)
                      +
T Consensus       151 ~  151 (312)
T PF00038_consen  151 I  151 (312)
T ss_dssp             -
T ss_pred             c
Confidence            3

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.42  E-value=0.36  Score=54.53  Aligned_cols=128  Identities=27%  Similarity=0.341  Sum_probs=73.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHH---
Q psy15551        325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQA---  401 (640)
Q Consensus       325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELE---  401 (640)
                      ...+.++......|+..+.+...|....+.|+.+|......+..+++....+-..   |..|..+......++....   
T Consensus       284 ~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~---v~~L~~eL~~~r~eLea~~~~e  360 (522)
T PF05701_consen  284 ASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSE---VSSLEAELNKTRSELEAAKAEE  360 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HhhHHHHHHHHHHHHHHHHhhh
Confidence            4455667777777777778888888888888888888888888888877654332   4555555555555544333   


Q ss_pred             ----HHHHHHH-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        402 ----EEIVDLE-ALQVVSDQLQEDAKEIE------IELKEEVEMARSATREVIREKEAALESLAD  455 (640)
Q Consensus       402 ----etIeDLE-aLkELnDELEEnhvE~E------KeLREELD~kdsqIrEL~rRIeq~eEqLED  455 (640)
                          ..+.++. .|++++.+.++...+.+      ..++.+++.....+.+...++......++.
T Consensus       361 ~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ea  425 (522)
T PF05701_consen  361 EKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEA  425 (522)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                3344444 45555555544433322      334444444444444444444444444433

Several sequences in this family are described as being myosin heavy chain-like.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.34  E-value=0.23  Score=50.49  Aligned_cols=136  Identities=17%  Similarity=0.219  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEAL  410 (640)
Q Consensus       331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLEaL  410 (640)
                      |..+...+.+.+....+....++....+|..++..++...+.++          .+..+...|++.+..+...+..++.-
T Consensus        94 i~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e----------~~E~ki~eLE~el~~~~~~lk~lE~~  163 (237)
T PF00261_consen   94 IEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAE----------AAESKIKELEEELKSVGNNLKSLEAS  163 (237)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhchhHHHHHHHHHHHHHHHHHhhhh
Confidence            34444445555555555555555555566666555554444433          33444444444444444444444422


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551        411 QVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALE  476 (640)
Q Consensus       411 kELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeE  476 (640)
                      .+-..+-+...-.....|...+...........+++..+...+.+++..|..++.....++..|..
T Consensus       164 ~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~  229 (237)
T PF00261_consen  164 EEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ  229 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222222333667777777777778888888888888888888888888888888888764

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG4674|consensus

Probab=97.33  E-value=0.99  Score=57.64  Aligned_cols=120  Identities=20%  Similarity=0.227  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEAD--CADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE  408 (640)
Q Consensus       331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~--~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE  408 (640)
                      +..+++.+..+...+.+|.+.....+.+...+...  +.|..--+|..--..+.++.|..+.-.-...|.++++.+.-.+
T Consensus       860 l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~e  939 (1822)
T KOG4674|consen  860 LDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLE  939 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444422  4444444444223335555556666666677778888888888


Q ss_pred             -HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        409 -ALQVVSDQLQEDAKEIE---IELKEEVEMARSATREVIREKEAAL  450 (640)
Q Consensus       409 -aLkELnDELEEnhvE~E---KeLREELD~kdsqIrEL~rRIeq~e  450 (640)
                       +|..++..+.+.+.+++   +.+..++-.++..+.++..++....
T Consensus       940 qsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~  985 (1822)
T KOG4674|consen  940 QSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLR  985 (1822)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             88888888888887777   3344444444555555555555444

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.31  E-value=0.36  Score=53.48  Aligned_cols=98  Identities=13%  Similarity=0.131  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        380 EEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIE---IELKEEVEMARSATREVIREKEAALESLADR  456 (640)
Q Consensus       380 EEMVEELTEKNleLEEKIeELEetIeDLEaLkELnDELEEnhvE~E---KeLREELD~kdsqIrEL~rRIeq~eEqLEDl  456 (640)
                      ...+..|+++...++.++..+...+.+++....--.++...-.+..   ...+..+.........++.+|..+.....+.
T Consensus       298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~  377 (562)
T PHA02562        298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN  377 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Confidence            6667777777777777777777777766632221222211111111   2333334334444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q psy15551        457 ELTIVKFRELVIREKEAALES  477 (640)
Q Consensus       457 E~TIsKFRELV~~LQedLeEL  477 (640)
                      +..+.+..+.+..+..++.++
T Consensus       378 ~~~l~~l~~~l~~~~~~~~~~  398 (562)
T PHA02562        378 AEELAKLQDELDKIVKTKSEL  398 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444443

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=97.31  E-value=5.3e-05  Score=87.05  Aligned_cols=37  Identities=35%  Similarity=0.576  Sum_probs=0.0

Q ss_pred             hhHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15551         54 RYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKREL   90 (640)
Q Consensus        54 ~d~~k~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el   90 (640)
                      +||.|+.++.-++.++..+.+--.-+++....|..++
T Consensus       319 ~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel  355 (713)
T PF05622_consen  319 KYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEEL  355 (713)
T ss_dssp             -------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555444444444444444443333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG4674|consensus

Probab=97.27  E-value=1.2  Score=57.09  Aligned_cols=130  Identities=21%  Similarity=0.261  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy15551        344 ENAELIKSQEKLKQRVTELEADCADLHEQVDAALGA-EEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDA  421 (640)
Q Consensus       344 ~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gA-EEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnh  421 (640)
                      ..++++..+-+|+..+..+-..+..|+.-.+.+-++ .+......++...|+.++..++..|.+|+ +-+-+.+++++.+
T Consensus      1054 ~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s 1133 (1822)
T KOG4674|consen 1054 QHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELS 1133 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345556666666667777777777776666655443 35556677777777777777777777777 6666666666655


Q ss_pred             HH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        422 KE------------------IEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEA  473 (640)
Q Consensus       422 vE------------------~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQed  473 (640)
                      ..                  .-.-||.|.+-.+..+..+.+....+..++.-++.+|...+..+...+..
T Consensus      1134 ~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~ 1203 (1822)
T KOG4674|consen 1134 QQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERAS 1203 (1822)
T ss_pred             hhhhhccccccccchHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44                  11567777777777777766666666666666666666555555544443

>KOG0996|consensus

Probab=97.26  E-value=0.91  Score=55.71  Aligned_cols=16  Identities=13%  Similarity=0.536  Sum_probs=13.4

Q ss_pred             chHHHHHHHhHhHhhc
Q psy15551        499 STENIEKCVTYFNTFY  514 (640)
Q Consensus       499 EaeqA~~hl~~l~~FL  514 (640)
                      ..+-|+.|+.+++.+=
T Consensus       650 t~e~aq~cI~fl~~~n  665 (1293)
T KOG0996|consen  650 TIETAQECINFLKKNN  665 (1293)
T ss_pred             cHHHHHHHHHHHHHcC
Confidence            6788999999998763

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.14  E-value=0.74  Score=52.44  Aligned_cols=97  Identities=27%  Similarity=0.304  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy15551         62 LDEMKIQLDQSAEFKAKIMESQAGLK----RELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDL  137 (640)
Q Consensus        62 l~~~~~~~~~~~~~k~~~~~~~~~~~----~el~~~k~~~~e~~~~~e~~~d~~~~lem~tldkemaee~~e~l~~el~~  137 (640)
                      |.+++.+++++...=..|=.....++    .+|.+++.=.++..+..-....+.=.-++.+|.+.+.+-....-..+|+.
T Consensus       200 l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~  279 (569)
T PRK04778        200 LDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDE  279 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHH
Confidence            45555555554444444444444443    44455555554444332222222122223333333433333344445666


Q ss_pred             HHHHHHHHhhhHHHHHHhhhh
Q psy15551        138 AKEKIEELTLDIELMKADIEK  158 (640)
Q Consensus       138 ~k~k~eel~le~e~lk~e~e~  158 (640)
                      +.+++..+...|+.|-.-++.
T Consensus       280 ~~~~~~~i~~~Id~Lyd~lek  300 (569)
T PRK04778        280 AEEKNEEIQERIDQLYDILER  300 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666665554444

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.01  E-value=1  Score=51.73  Aligned_cols=43  Identities=21%  Similarity=0.261  Sum_probs=18.9

Q ss_pred             HHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551         58 KTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEA  100 (640)
Q Consensus        58 k~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~  100 (640)
                      .....+.++.+.+.+..=.+.....+..|..++..+.+...+.
T Consensus       197 l~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~  239 (546)
T PF07888_consen  197 LTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQ  239 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444555555443333333344444444444444444333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0976|consensus

Probab=96.99  E-value=1.3  Score=52.69  Aligned_cols=204  Identities=13%  Similarity=0.120  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q psy15551        346 AELIKSQEKLKQRVTELEADCADLHEQVDAALGA-EEMVQQLSVQKLELEDLVSKQAEEIV----DLEALQVVSDQLQED  420 (640)
Q Consensus       346 ~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gA-EEMVEELTEKNleLEEKIeELEetIe----DLEaLkELnDELEEn  420 (640)
                      +-|.+....-...+..+.....+|++-+-.|+|- ++--.-|-..|+.+..++..+.-.+-    ..|.+.+.-.+|+..
T Consensus       280 s~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKk  359 (1265)
T KOG0976|consen  280 SVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKK  359 (1265)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence            3333333333344445555556666666666663 23333344445555555544433332    334566666777777


Q ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhccChhhHHhh
Q psy15551        421 AKEIE---IELKEEVEMARSATREVIREKEAALESLADRELTIVKFREL----------VIREKEAALESLADRELTIVK  487 (640)
Q Consensus       421 hvE~E---KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFREL----------V~~LQedLeEL~~~~~~~~~~  487 (640)
                      |...+   ..+++-+..-+..++.+....+..+++|..+...|-.|...          ++...+.+.-+-..+.|.+.+
T Consensus       360 rd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q  439 (1265)
T KOG0976|consen  360 RDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQ  439 (1265)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            76666   44555555555555555555566666666666666555554          223333333333444555555


Q ss_pred             ---HHhhhhhhhhc---chHHHHHHHhHhHhhc--CCCCCCCCCCchHHHHHHHHHHhhhhhhhhhchHHHHHHHHHhh
Q psy15551        488 ---FRELNSLDEKV---STENIEKCVTYFNTFY--PVLFPDTKFSHVGHLLMDYVKILSTASDCLQTDSKIIQALIQET  558 (640)
Q Consensus       488 ---~sasKA~~k~I---EaeqA~~hl~~l~~FL--PdsF~~~GGD~DsVl~lLlf~RLa~Acd~~~~Ka~Ll~~~I~e~  558 (640)
                         |-..|.+++--   -.+|-...+.++++.+  |+.=.++  +..--.+-+-..|=+       .|+..+..-|.++
T Consensus       440 ~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKV--eqe~emlKaen~rqa-------kkiefmkEeiQet  509 (1265)
T KOG0976|consen  440 LSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKV--EQEYEMLKAENERQA-------KKIEFMKEEIQET  509 (1265)
T ss_pred             HhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcch--HHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence               33333333311   3567777778888776  3443332  222233334455666       4555554444444

>KOG0977|consensus

Probab=96.98  E-value=0.75  Score=52.74  Aligned_cols=26  Identities=42%  Similarity=0.587  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhchhhhh
Q psy15551        174 IKQLEQQNMRLRETLVRLRDLSAHEI  199 (640)
Q Consensus       174 ~~qle~qN~rLreaLvrlRd~s~~~~  199 (640)
                      .+-|-.+|.||+..|-++|..-..++
T Consensus       171 ~~~Lk~en~rl~~~l~~~r~~ld~Et  196 (546)
T KOG0977|consen  171 LKRLKAENSRLREELARARKQLDDET  196 (546)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            46677888999999999998665543

>KOG0933|consensus

Probab=96.96  E-value=1.6  Score=53.11  Aligned_cols=95  Identities=20%  Similarity=0.280  Sum_probs=58.5

Q ss_pred             HHHHHhhhhhhhhhHHHHHhhhhHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy15551         14 TMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKL   93 (640)
Q Consensus        14 ~~~~k~~ek~~~~~~~~~ql~q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~   93 (640)
                      ..+.+.+...++|+.+..+|.-+..-..|--.-+++     .--++++|.-.+..+++...+  ++.+-...+..++.+.
T Consensus       681 ~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~q-----l~l~~~~l~l~~~r~~~~e~~--~~~~~~~~~~e~v~e~  753 (1174)
T KOG0933|consen  681 QAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQ-----LELKLHELALLEKRLEQNEFH--KLLDDLKELLEEVEES  753 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcChHh--hHHHHHHHHHHHHHHH
Confidence            344445555566888888887766655555555555     556778887777777775443  2344445566677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy15551         94 KQEKQEAVEAKEDTADLVETLE  115 (640)
Q Consensus        94 k~~~~e~~~~~e~~~d~~~~le  115 (640)
                      ++++++.+...-+..+-..++|
T Consensus       754 ~~~Ike~~~~~k~~~~~i~~lE  775 (1174)
T KOG0933|consen  754 EQQIKEKERALKKCEDKISTLE  775 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7777666655555555555554

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.91  E-value=1.5  Score=51.94  Aligned_cols=127  Identities=21%  Similarity=0.212  Sum_probs=74.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy15551         70 DQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDI  149 (640)
Q Consensus        70 ~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~  149 (640)
                      ..++.-.+.++....+|+.+|..+|.++.-.....+.+.-....   +-=+.|+.|-..-.|..|+..+|.+=.-|=-|+
T Consensus        23 ~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~---~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy   99 (717)
T PF09730_consen   23 QESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQE---LRKECEDLELERKRLREEIKEYKFREARLLQDY   99 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            34455566777777778888888888887777766644322211   122355566666667777777777666555555


Q ss_pred             HHHHHhhhhhcC------CCCCCCCcchHHHHHHHHHHHHHH---HHHHHhhhchhhhh
Q psy15551        150 ELMKADIEKSCD------GAGDGTEVSHYQIKQLEQQNMRLR---ETLVRLRDLSAHEI  199 (640)
Q Consensus       150 e~lk~e~e~~~~------~~~~~~~~~~~~~~qle~qN~rLr---eaLvrlRd~s~~~~  199 (640)
                      --|.+|+=....      ++-..-+.--..++.|+..+.-|+   |-++|||+++.+..
T Consensus       100 selEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~ql  158 (717)
T PF09730_consen  100 SELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQL  158 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555322111      001112234455666666665554   34578999987653

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=96.89  E-value=0.00024  Score=83.75  Aligned_cols=147  Identities=23%  Similarity=0.389  Sum_probs=0.0

Q ss_pred             hhhHHHHHHHHHHHH-------HHhhhhhhhhhHHHHHhhhhHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHH----
Q psy15551          2 KAEIQDLKEKLDTMK-------IKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLD----   70 (640)
Q Consensus         2 ~~e~~~l~~kl~~~~-------~k~~ek~~~~~~~~~ql~q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~----   70 (640)
                      .+.|.+|.+.|+.=+       ..|++=.++|+.|+-+|+....-.+.-+|....        +=.+|.+++.+++    
T Consensus        45 q~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kk--------rE~El~~Lrr~LEe~~~  116 (859)
T PF01576_consen   45 QARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKK--------REAELAKLRRDLEEANL  116 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence            345666666665433       344555678999999999888887766655444        2245555555543    


Q ss_pred             ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy15551         71 ----QSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKI  142 (640)
Q Consensus        71 ----~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e----~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~  142 (640)
                          .+.+.|.|-....+.|..++..+++.+..+...+.    ++.++...|+..+--|=-+|.....+...|..++.++
T Consensus       117 ~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~kl  196 (859)
T PF01576_consen  117 QHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKL  196 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence                35677888888889999999999888877765554    7789999999999989889999999999999999999


Q ss_pred             HHHhhhHHHHHHhh
Q psy15551        143 EELTLDIELMKADI  156 (640)
Q Consensus       143 eel~le~e~lk~e~  156 (640)
                      ++.+-.+.-+....
T Consensus       197 ee~er~~~el~~~k  210 (859)
T PF01576_consen  197 EESERQRNELTEQK  210 (859)
T ss_dssp             --------------
T ss_pred             HHHHHHHHHHHHHH
Confidence            88877666655433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK09039 hypothetical protein; Validated

Probab=96.84  E-value=0.16  Score=54.59  Aligned_cols=139  Identities=16%  Similarity=0.115  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDL  407 (640)
Q Consensus       328 k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDL  407 (640)
                      .++++.+.+++..+..++++|-....-=..+...++..+..++.+++++......++..-.   ...+...+++.....+
T Consensus        45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~---~~~~~~~~~~~~~~~l  121 (343)
T PRK09039         45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA---ELAGAGAAAEGRAGEL  121 (343)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhcchHHHHHHHH
Confidence            4567777788888887887777666666677788888888888888866655544443222   2222233455555555


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551        408 E-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALES  477 (640)
Q Consensus       408 E-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL  477 (640)
                      . +|.+....+.+.|.++        ..+..+|..+..++...+..|...+......+..+..++..|+..
T Consensus       122 ~~~L~~~k~~~se~~~~V--------~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        122 AQELDSEKQVSARALAQV--------ELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             HHHHHHHHHHHHHhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5 5555555555444443        334444444444444555555555555555555555555555544

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.83  E-value=1.8  Score=51.71  Aligned_cols=75  Identities=20%  Similarity=0.364  Sum_probs=46.9

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHH
Q psy15551          3 AEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAK   78 (640)
Q Consensus         3 ~e~~~l~~kl~~~~~k~~ek~~~~~~~~~ql~q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~   78 (640)
                      .|+..+.++|+|+...-.+=-.|++.++++|--...=++.. -+-...--||.-+|-..+++-..++..+.+-++.
T Consensus       301 ~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~L-qsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~  375 (775)
T PF10174_consen  301 SELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEML-QSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSR  375 (775)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57788888999888888777778888888887666555432 2222222344445555555555555555444444

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=96.74  E-value=0.00037  Score=82.20  Aligned_cols=159  Identities=24%  Similarity=0.331  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHhh-h-hhhhhHHH-HhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy15551         35 QSAEFKAKIMESQAA-S-SLFRYREK-TRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE------  105 (640)
Q Consensus        35 q~~~~k~k~~e~~~~-~-~~~~d~~k-~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e------  105 (640)
                      ++..||+|.-....+ . .+-..|-| .+.|..+..+++....-...+...-..|+.++..+.-++..+.....      
T Consensus       300 El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKq  379 (859)
T PF01576_consen  300 ELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQ  379 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666665443333 1 12222222 34455555555555555555555555566666666655555433211      


Q ss_pred             -----HHHHHHHHHHHhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCC-Ccc--
Q psy15551        106 -----DTADLVETLEMMTLDKEM-------AEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGT-EVS--  170 (640)
Q Consensus       106 -----~~~d~~~~lem~tldkem-------aee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~-~~~--  170 (640)
                           .++++...++-.....+-       .+-.+-.|+.+++.+.+.++.++-+...|..++....+..++++ .+.  
T Consensus       380 r~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eL  459 (859)
T PF01576_consen  380 RKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHEL  459 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHH
Confidence                 334443333333333333       33344445555555566666666666666666666544322221 111  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhh
Q psy15551        171 HYQIKQLEQQNMRLRETLVRLRD  193 (640)
Q Consensus       171 ~~~~~qle~qN~rLreaLvrlRd  193 (640)
                      --..++||.+...|+.+|--+=+
T Consensus       460 ek~kr~LE~e~~El~~~leE~E~  482 (859)
T PF01576_consen  460 EKAKRRLEQEKEELQEQLEEAED  482 (859)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            22456788887777777654433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.60  E-value=2  Score=49.14  Aligned_cols=149  Identities=22%  Similarity=0.232  Sum_probs=77.9

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H
Q psy15551         29 MKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAV------E  102 (640)
Q Consensus        29 ~~~ql~q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~------~  102 (640)
                      ...+++.+..||..|+..-    +...=.|++.|.-.-.-...+..++.+|.+.....--++...=-+..++.      .
T Consensus        23 ~~k~i~~Le~~k~~l~~~p----v~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~k   98 (560)
T PF06160_consen   23 YYKEIDELEERKNELMNLP----VADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKK   98 (560)
T ss_pred             HHHHHHHHHHHHHHHHcCC----HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHH
Confidence            4457888888998877543    33344566666323233446677888888877654444433322222221      1


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHhhhhhcCCCCCCCCcchHHHH
Q psy15551        103 AKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIE-------LMKADIEKSCDGAGDGTEVSHYQIK  175 (640)
Q Consensus       103 ~~e~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e-------~lk~e~e~~~~~~~~~~~~~~~~~~  175 (640)
                      ++..+.++.+.|.       -+++....+..+|+.+.+.-++-..+++       -+|..+-.....-|       ..+.
T Consensus        99 a~~~i~~~~~~l~-------~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G-------~a~~  164 (560)
T PF06160_consen   99 AKQAIKEIEEQLD-------EIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYG-------PAIE  164 (560)
T ss_pred             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-------hhHH
Confidence            2223333333332       2456666666666666554444444444       44444333222212       2345


Q ss_pred             HHHHHHHHHHHHHHHhhhch
Q psy15551        176 QLEQQNMRLRETLVRLRDLS  195 (640)
Q Consensus       176 qle~qN~rLreaLvrlRd~s  195 (640)
                      .||++-..+-.-....-.++
T Consensus       165 ~Le~~L~~ie~~F~~f~~lt  184 (560)
T PF06160_consen  165 ELEKQLENIEEEFSEFEELT  184 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66777666666666666666

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.59  E-value=3.2  Score=51.46  Aligned_cols=59  Identities=19%  Similarity=0.315  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhhch
Q psy15551        126 ERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLS  195 (640)
Q Consensus       126 e~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlRd~s  195 (640)
                      .+.+.++.+...+...+..+..+..-++...+.           ...+...+.++...++..+..|-.+=
T Consensus       476 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------a~~~l~~~~~~~~~~~~~~~~l~~~L  534 (1201)
T PF12128_consen  476 KRLEQAQEQQNQAQQAVEELQAEEQELRKERDQ-----------AEEELRQARRELEELRAQIAELQRQL  534 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            334444444444444444444444444433222           23345566666666666666665543

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.51  E-value=1.9  Score=47.92  Aligned_cols=63  Identities=16%  Similarity=0.209  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy15551        352 QEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEI  424 (640)
Q Consensus       352 ~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~  424 (640)
                      ...+..++.+++..+...+..+          ..+..++..++.+|+.|+..+.+++ .|.++.++|.+...+.
T Consensus       332 ~~~~~~~i~el~~~i~~~~~~i----------~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~  395 (562)
T PHA02562        332 FNEQSKKLLELKNKISTNKQSL----------ITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTK  395 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence            3334444455555554444443          3355555555556666655555555 5555555555555443

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.48  E-value=0.34  Score=46.36  Aligned_cols=73  Identities=21%  Similarity=0.263  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy15551        347 ELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQE  419 (640)
Q Consensus       347 ~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEE  419 (640)
                      .+......|..++..+|.+|+.+.++|..+-..-+..+.....+..|..+|.-|++.++..+ .|++....|.+
T Consensus        32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e  105 (143)
T PF12718_consen   32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLRE  105 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444444444444444444444444455555555555555555 44444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=96.48  E-value=0.95  Score=45.48  Aligned_cols=133  Identities=19%  Similarity=0.226  Sum_probs=101.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEI  404 (640)
Q Consensus       325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetI  404 (640)
                      ...|.+|..+.+..+.......++......|..-|..++..++.|+.++...----..+..+..+...++.++..|+-..
T Consensus        30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~  109 (201)
T PF13851_consen   30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEH  109 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55788888888888888888888888888999999999999999999998776666778888888888899999999888


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        405 VDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRE  457 (640)
Q Consensus       405 eDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE  457 (640)
                      +.|+ .+..+..+-.+....++..+.+=.....-..-=+.+++....+.++..+
T Consensus       110 evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~ke  163 (201)
T PF13851_consen  110 EVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKE  163 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888 8888888888877777755544444444444444555555555555433

>KOG0995|consensus

Probab=96.44  E-value=2.6  Score=48.64  Aligned_cols=105  Identities=18%  Similarity=0.203  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhcHHHHHHHHHHHHHHHHHHHHH
Q psy15551        325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHE-----QVDAALGAEEMVQQLSVQKLELEDLVSK  399 (640)
Q Consensus       325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~-----q~d~a~gAEEMVEELTEKNleLEEKIeE  399 (640)
                      .....+...||..+..+..-.++++.....++-++..+++.|.-.++     +.+....++.+.++|...++.+...+.+
T Consensus       435 ~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~  514 (581)
T KOG0995|consen  435 HEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKE  514 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455667788888899999999999999999999999999988764     5677888889999999999999888888


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy15551        400 QAEEIVDLE-ALQVVSDQLQEDAKEIEIELK  429 (640)
Q Consensus       400 LEetIeDLE-aLkELnDELEEnhvE~EKeLR  429 (640)
                      ...-+...+ .+..+....++-.....++|.
T Consensus       515 a~~~v~s~e~el~~~~~~~~eer~ki~~ql~  545 (581)
T KOG0995|consen  515 AEELVKSIELELDRMVATGEEERQKIAKQLF  545 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888777777 666655555554444433333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.34  E-value=0.82  Score=43.78  Aligned_cols=121  Identities=20%  Similarity=0.227  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HH
Q psy15551        352 QEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE---IE  427 (640)
Q Consensus       352 ~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E---Ke  427 (640)
                      .+....+...+++.+..|.+.   ....+..|..|+.+|..++..|..++..+.+.. .+.+...... +.-.+.   ..
T Consensus         9 ~d~a~~r~e~~e~~~K~le~~---~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~-~~E~l~rriq~   84 (143)
T PF12718_consen    9 ADNAQDRAEELEAKVKQLEQE---NEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKS-NAEQLNRRIQL   84 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hHHHHHhhHHH
Confidence            344455556666666666554   456777888888888888888888888888877 4443322221 111111   45


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551        428 LKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALE  476 (640)
Q Consensus       428 LREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeE  476 (640)
                      |.++++..+..+.+...++.......+.++..+..+..........+.+
T Consensus        85 LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee  133 (143)
T PF12718_consen   85 LEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE  133 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            5555665555555555555555555555555555554444444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.32  E-value=3.4  Score=48.78  Aligned_cols=47  Identities=23%  Similarity=0.349  Sum_probs=36.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHE  371 (640)
Q Consensus       325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~  371 (640)
                      ...|.+++.++++.|.+...+..|.....+=++-+..+|..+.+.+.
T Consensus       456 r~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~  502 (697)
T PF09726_consen  456 RSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERR  502 (697)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888888888888888888888888888888888877655543

; GO: 0016021 integral to membrane

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=96.29  E-value=0.0032  Score=72.71  Aligned_cols=145  Identities=19%  Similarity=0.188  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQ---QLSVQKLELEDLVSKQAEEIVDL  407 (640)
Q Consensus       331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVE---ELTEKNleLEEKIeELEetIeDL  407 (640)
                      +..+...++.++.....+.+....|..++.-+-..|.-|+.||+..-.-+.+..   ..+.+...+++-+..+.....++
T Consensus       380 ~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~el  459 (722)
T PF05557_consen  380 KEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAEL  459 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHH
Confidence            344445555555555555555556667777777889999999986433222221   11222223333333333333333


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551        408 E-ALQVVSDQLQEDAKEIEIELKEEVEMARSA-------TREVIREKEAALESLADRELTIVKFRELVIREKEAALE  476 (640)
Q Consensus       408 E-aLkELnDELEEnhvE~EKeLREELD~kdsq-------IrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeE  476 (640)
                      + .+..+..++...... ...+..++......       +.....++..++..+..++..+.+.+..+..|...|..
T Consensus       460 e~~l~~l~~~l~~~k~~-~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~  535 (722)
T PF05557_consen  460 EAQLEELEEELSEQKQR-NETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK  535 (722)
T ss_dssp             -----------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhcc-ccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 344444444433221 12223333322222       23345667778888888888888888888888888875

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PRK01156 chromosome segregation protein; Provisional

Probab=96.29  E-value=3.6  Score=48.83  Aligned_cols=26  Identities=8%  Similarity=0.272  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy15551        128 AETLQVELDLAKEKIEELTLDIELMK  153 (640)
Q Consensus       128 ~e~l~~el~~~k~k~eel~le~e~lk  153 (640)
                      .+.++.++..++.++.++...++-++
T Consensus       418 ~~~l~~~i~~l~~~i~~l~~~~~el~  443 (895)
T PRK01156        418 LQDISSKVSSLNQRIRALRENLDELS  443 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555554

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.08  E-value=4.2  Score=47.49  Aligned_cols=79  Identities=18%  Similarity=0.230  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHhhh
Q psy15551         75 FKAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEMMTLDKEMAE--ERAETLQVELDLAKEKIEELTLD  148 (640)
Q Consensus        75 ~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e----~~~d~~~~lem~tldkemae--e~~e~l~~el~~~k~k~eel~le  148 (640)
                      -.+.|+.....+-.++..++.+++.......    .+++|...+....-...-|.  +.-..|+.++..++.+++.|.-.
T Consensus        23 e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~q  102 (617)
T PF15070_consen   23 ESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQ  102 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666777777777777766654433    33333333222221111111  11135666666666666666655


Q ss_pred             HHHHH
Q psy15551        149 IELMK  153 (640)
Q Consensus       149 ~e~lk  153 (640)
                      +...-
T Consensus       103 lqaqv  107 (617)
T PF15070_consen  103 LQAQV  107 (617)
T ss_pred             HHHHH
Confidence            55443

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.03  E-value=1.3  Score=47.17  Aligned_cols=52  Identities=25%  Similarity=0.394  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        354 KLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE  408 (640)
Q Consensus       354 ~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE  408 (640)
                      .|...+..+..+.+.|...+...-   +.+..+..+...|..++..|++...+++
T Consensus       153 ~L~~~~~~L~~D~~~L~~~~~~l~---~~~~~l~~~~~~L~~e~~~Lk~~~~e~~  204 (325)
T PF08317_consen  153 GLEENLELLQEDYAKLDKQLEQLD---ELLPKLRERKAELEEELENLKQLVEEIE  204 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            344444445555544444443332   3355566666666666666666655544

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.03  E-value=2.1  Score=43.62  Aligned_cols=61  Identities=25%  Similarity=0.338  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhhchh
Q psy15551        122 EMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSA  196 (640)
Q Consensus       122 emaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlRd~s~  196 (640)
                      +-|+++++.++.+|.....+.+..+.++.-|..-+...-+.              |++...||..+.-+|-.++.
T Consensus        11 d~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~--------------le~~eerL~~~~~kL~~~e~   71 (237)
T PF00261_consen   11 DEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEE--------------LERAEERLEEATEKLEEAEK   71 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555444332222              45556666666666666653

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.99  E-value=1.2  Score=46.37  Aligned_cols=78  Identities=18%  Similarity=0.311  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVD  406 (640)
Q Consensus       328 k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeD  406 (640)
                      +.++..+.+.++.+..+...+..+...+...+..+.+.+++...++ .+.--+.+...|+-....+.+++..|+..+.+
T Consensus        37 ~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~  114 (239)
T COG1579          37 KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSLEDELAE  114 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444444 22223344444444444444444444444433

>KOG0963|consensus

Probab=95.98  E-value=4.5  Score=47.09  Aligned_cols=56  Identities=16%  Similarity=0.119  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551        422 KEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALES  477 (640)
Q Consensus       422 vE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL  477 (640)
                      .+-.+.|+.|.-.+++....+..++.......+....++.--++.+..+..++...
T Consensus       382 l~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~  437 (629)
T KOG0963|consen  382 LEKNRKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKV  437 (629)
T ss_pred             HHHHhhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhc
Confidence            34446667777777777777777888888888888888888888888888888754

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.96  E-value=2.2  Score=43.31  Aligned_cols=43  Identities=12%  Similarity=0.002  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        433 EMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAAL  475 (640)
Q Consensus       433 D~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLe  475 (640)
                      -.+++.+.+-.++|..+...++.|..++...|-.+++|.+++-
T Consensus       147 ~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~  189 (193)
T PF14662_consen  147 CQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLS  189 (193)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555666677777777777777777777777777777664

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=95.94  E-value=3.2  Score=44.98  Aligned_cols=150  Identities=14%  Similarity=0.203  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhcHHHHHHHHHHHHHHHHHHH
Q psy15551        329 HEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVD-----------AALGAEEMVQQLSVQKLELEDLV  397 (640)
Q Consensus       329 ~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d-----------~a~gAEEMVEELTEKNleLEEKI  397 (640)
                      ..+.-|-++++.-..|..++.-..+.|+.+-..+...+.++..+.+           .--.+-.++.+..++|..|...+
T Consensus         9 eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev   88 (319)
T PF09789_consen    9 EALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEV   88 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence            3456677888888888888888888888888888888888875533           12345578899999999999999


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        398 SKQAEEIVDLE-ALQVVSDQLQEDAKEIE-----------IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRE  465 (640)
Q Consensus       398 eELEetIeDLE-aLkELnDELEEnhvE~E-----------KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRE  465 (640)
                      ..|...+.++. .++-+...+....+...           ..|=.+++....++..+++.+.......+++...=.-|+.
T Consensus        89 ~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~  168 (319)
T PF09789_consen   89 EELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKC  168 (319)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998 77777777766655443           7788889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q psy15551        466 LVIREKEAALESL  478 (640)
Q Consensus       466 LV~~LQedLeEL~  478 (640)
                      .+..|+.+|.-++
T Consensus       169 K~~RLN~ELn~~L  181 (319)
T PF09789_consen  169 KAHRLNHELNYIL  181 (319)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998774

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.87  E-value=0.53  Score=50.05  Aligned_cols=141  Identities=27%  Similarity=0.324  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHhhhhhhhhHH-HHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy15551         38 EFKAKIMESQAASSLFRYRE-KTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAV-EAKEDTADLVETLE  115 (640)
Q Consensus        38 ~~k~k~~e~~~~~~~~~d~~-k~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~-~~~e~~~d~~~~le  115 (640)
                      +|+.++++.-.. .|-+..+ =-.|+..+.....++.+..+++.+..+.|..++..++.-..+.. ...+++..+...|.
T Consensus       141 eWR~~ll~gl~~-~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~  219 (325)
T PF08317_consen  141 EWRMQLLEGLKE-GLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELA  219 (325)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHH
Confidence            456666555444 1222222 22455666666667777788888888888888887777666532 22234444444333


Q ss_pred             HhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHH
Q psy15551        116 MMTLDKEMA--EERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQN  181 (640)
Q Consensus       116 m~tldkema--ee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN  181 (640)
                        .++.+++  ......++.++..++.++++++....-+.++|..........-..+..++..|...-
T Consensus       220 --~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~  285 (325)
T PF08317_consen  220 --EQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKV  285 (325)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence              3333344  345567778888888888888888888888776643211111224666665544433

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=95.80  E-value=0.0076  Score=69.72  Aligned_cols=54  Identities=19%  Similarity=0.260  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        358 RVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQ  411 (640)
Q Consensus       358 kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLEaLk  411 (640)
                      ++..+|+.++-+|+.+...-.+...|+.|.++|..+-+.+..|++.+....+++
T Consensus       309 r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~  362 (713)
T PF05622_consen  309 RADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALK  362 (713)
T ss_dssp             ------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            457789999999999999888889999999999988888888888887765543

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=95.67  E-value=5.4  Score=45.63  Aligned_cols=47  Identities=26%  Similarity=0.238  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        428 LKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAA  474 (640)
Q Consensus       428 LREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedL  474 (640)
                      ++++++.....+.++........+.+..+.......++.+..++..+
T Consensus       381 l~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L  427 (569)
T PRK04778        381 LQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKL  427 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444444444444444444444433333

>KOG0977|consensus

Probab=95.54  E-value=2.6  Score=48.52  Aligned_cols=118  Identities=22%  Similarity=0.263  Sum_probs=77.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEI  404 (640)
Q Consensus       325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetI  404 (640)
                      .+...+..+++.++..+..++.+|.+..++....+....   .+++......-.++-.+..++-++..+++++..|+.++
T Consensus       102 ~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~r---e~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en  178 (546)
T KOG0977|consen  102 DETARERAKLEIEITKLREELKELRKKLEKAEKERRGAR---EKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAEN  178 (546)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhH---HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333445666777777777777777776665544433333   33444555555667778888888888999999888888


Q ss_pred             HHHH-HHHHHHHHHHHH---HHHHH---HHHHHHHHHHH----HHHHHHHHH
Q psy15551        405 VDLE-ALQVVSDQLQED---AKEIE---IELKEEVEMAR----SATREVIRE  445 (640)
Q Consensus       405 eDLE-aLkELnDELEEn---hvE~E---KeLREELD~kd----sqIrEL~rR  445 (640)
                      ..|. .|..+..++..-   .++.+   ..|.++|+++.    ..|.+..+.
T Consensus       179 ~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~  230 (546)
T KOG0977|consen  179 SRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRK  230 (546)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            8887 777766666542   23333   77888888887    455544443

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=95.52  E-value=1.1  Score=48.46  Aligned_cols=132  Identities=26%  Similarity=0.353  Sum_probs=80.8

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhcHHHHHHHHHHHHHHH
Q psy15551        320 LRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQV------DAALGAEEMVQQLSVQKLEL  393 (640)
Q Consensus       320 l~d~~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~------d~a~gAEEMVEELTEKNleL  393 (640)
                      |..+-.+.|.+...|..+++.              |++++.++..+|.-|++++      +...|+..-.    .....|
T Consensus        70 La~lL~~sre~Nk~L~~Ev~~--------------Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~----~ere~l  131 (319)
T PF09789_consen   70 LAQLLSESREQNKKLKEEVEE--------------LRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP----HEREDL  131 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhchHHHHHHHHHhhhhhhccccccccc----hHHHHH
Confidence            333344555555555555555              4455555555555555543      2333333211    555556


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH------HHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Q psy15551        394 EDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE------IELKEE--------------VEMARSATREVIREKEAALES  452 (640)
Q Consensus       394 EEKIeELEetIeDLE-aLkELnDELEEnhvE~E------KeLREE--------------LD~kdsqIrEL~rRIeq~eEq  452 (640)
                      =.+++.++..+..|+ .++.+-||.++...|--      ..|..|              ||.+-...+=+..|+.+++++
T Consensus       132 V~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE  211 (319)
T PF09789_consen  132 VEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEE  211 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666677776 66666666666655543      344444              555556667788899999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy15551        453 LADRELTIVKFRELVIR  469 (640)
Q Consensus       453 LEDlE~TIsKFRELV~~  469 (640)
                      ..-...+|++|+..+..
T Consensus       212 ~~l~k~~i~KYK~~le~  228 (319)
T PF09789_consen  212 KELLKQTINKYKSALER  228 (319)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999988774

>PRK09039 hypothetical protein; Validated

Probab=95.48  E-value=2.1  Score=46.22  Aligned_cols=123  Identities=12%  Similarity=0.128  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy15551        331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-A  409 (640)
Q Consensus       331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-a  409 (640)
                      |..|-.-+.--.+.++.+......+...+..+++.-+.|..+....   .+....+..+-..++.++.+.+..+.+.- .
T Consensus        62 Ia~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~---~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~  138 (343)
T PRK09039         62 IAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAEL---AGAGAAAEGRAGELAQELDSEKQVSARALAQ  138 (343)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhcchHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            3333333333345556666666667777777777777777766522   22233455555566677777777777666 6


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        410 LQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFR  464 (640)
Q Consensus       410 LkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFR  464 (640)
                      +.-++.+++....+        +..++..|...+.+....+.+++++...|....
T Consensus       139 V~~L~~qI~aLr~Q--------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~  185 (343)
T PRK09039        139 VELLNQQIAALRRQ--------LAALEAALDASEKRDRESQAKIADLGRRLNVAL  185 (343)
T ss_pred             HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666655444        445555555555555555555555555554443

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=95.48  E-value=6.9  Score=45.56  Aligned_cols=81  Identities=17%  Similarity=0.151  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        397 VSKQAEEIVDLE-ALQVVSDQLQEDAKEIE---IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKE  472 (640)
Q Consensus       397 IeELEetIeDLE-aLkELnDELEEnhvE~E---KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQe  472 (640)
                      |..|+.-|+.-+ .+.++..+.+..+..+.   ..|+.....+.........++......+......|..--+....|..
T Consensus       396 i~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~  475 (594)
T PF05667_consen  396 IAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVK  475 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444 45555555555555444   44444444455555566677777888888888888888888888888


Q ss_pred             HHHhh
Q psy15551        473 AALES  477 (640)
Q Consensus       473 dLeEL  477 (640)
                      +++.+
T Consensus       476 e~e~~  480 (594)
T PF05667_consen  476 ELEKL  480 (594)
T ss_pred             HHHhC
Confidence            88876

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=95.18  E-value=3.8  Score=40.79  Aligned_cols=99  Identities=18%  Similarity=0.375  Sum_probs=78.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        324 SAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL--GAEEMVQQLSVQKLELEDLVSKQA  401 (640)
Q Consensus       324 ~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~--gAEEMVEELTEKNleLEEKIeELE  401 (640)
                      +.-..+.|..++..+.+.+..++........++.++..++..+.++..+...|+  |-+++-...-.+...++..+..++
T Consensus        25 ~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~  104 (221)
T PF04012_consen   25 EKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLE  104 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            344567788889999999999999999999999999999999999999998886  456777777777777777777777


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHH
Q psy15551        402 EEIVDLE-ALQVVSDQLQEDAK  422 (640)
Q Consensus       402 etIeDLE-aLkELnDELEEnhv  422 (640)
                      ..+..+. ....+...|.....
T Consensus       105 ~~~~~~~~~~~~l~~~l~~l~~  126 (221)
T PF04012_consen  105 QQLDQAEAQVEKLKEQLEELEA  126 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7777766 55555555544433

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.17  E-value=3.4  Score=44.38  Aligned_cols=118  Identities=15%  Similarity=0.147  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        353 EKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEV  432 (640)
Q Consensus       353 ~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLEaLkELnDELEEnhvE~EKeLREEL  432 (640)
                      +.|...+..+.++-.-|..++..+-   +.+..|.++...|..++..|+....+++...  .++|...+ +.-.....++
T Consensus       147 ~~L~~~~~~l~~D~~~L~~~~~~l~---~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d--~~eL~~lk-~~l~~~~~ei  220 (312)
T smart00787      147 EGLDENLEGLKEDYKLLMKELELLN---SIKPKLRDRKDALEEELRQLKQLEDELEDCD--PTELDRAK-EKLKKLLQEI  220 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHhCC--HHHHHHHH-HHHHHHHHHH
Confidence            3344444445555444544444332   3466667777777777777777666665322  23333333 2223334444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551        433 EMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALE  476 (640)
Q Consensus       433 D~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeE  476 (640)
                      ..+...+.+++.++......|++....+..++..++.++..+.+
T Consensus       221 ~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~  264 (312)
T smart00787      221 MIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ  264 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555555555555555555555555555555555555554443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.09  E-value=2.9  Score=44.24  Aligned_cols=24  Identities=33%  Similarity=0.469  Sum_probs=15.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhh
Q psy15551        170 SHYQIKQLEQQNMRLRETLVRLRD  193 (640)
Q Consensus       170 ~~~~~~qle~qN~rLreaLvrlRd  193 (640)
                      ...+..+++.+..+++..+.+|+.
T Consensus        79 ~~~~l~~l~~~~~~l~a~~~~l~~  102 (423)
T TIGR01843        79 VEADAAELESQVLRLEAEVARLRA  102 (423)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            344666677777777766665544

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK10698 phage shock protein PspA; Provisional

Probab=95.09  E-value=3.8  Score=41.78  Aligned_cols=84  Identities=18%  Similarity=0.357  Sum_probs=62.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL--GAEEMVQQLSVQKLELEDLVSKQAE  402 (640)
Q Consensus       325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~--gAEEMVEELTEKNleLEEKIeELEe  402 (640)
                      .-.+.=++.+..++.+.++..+........+.+++..++..++++..+--.|+  |=++.-..--.+.....+++..|+.
T Consensus        27 k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~  106 (222)
T PRK10698         27 KLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEH  106 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556678888899999999999999999999999999999999999998887  4556666634444444445444444


Q ss_pred             HHHHHH
Q psy15551        403 EIVDLE  408 (640)
Q Consensus       403 tIeDLE  408 (640)
                      .+....
T Consensus       107 ~~~~~~  112 (222)
T PRK10698        107 EVTLVD  112 (222)
T ss_pred             HHHHHH
Confidence            444444

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=94.90  E-value=5.3  Score=41.76  Aligned_cols=26  Identities=27%  Similarity=0.293  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        383 VQQLSVQKLELEDLVSKQAEEIVDLE  408 (640)
Q Consensus       383 VEELTEKNleLEEKIeELEetIeDLE  408 (640)
                      ++.+..+...++..|.++++.+++.+
T Consensus        54 ~e~le~qv~~~e~ei~~~r~r~~~~e   79 (239)
T COG1579          54 LEDLENQVSQLESEIQEIRERIKRAE   79 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=94.79  E-value=2.1  Score=51.04  Aligned_cols=142  Identities=23%  Similarity=0.324  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHH----HHHHHHHHHHHHHHHHH
Q psy15551        329 HEMSKLQKDIEEKKQENAE-------LIKSQEKLKQRVTELEADCADLHEQVDAALGAE----EMVQQLSVQKLELEDLV  397 (640)
Q Consensus       329 ~~~~~~~~~~e~~~~~~~~-------l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAE----EMVEELTEKNleLEEKI  397 (640)
                      .....+..+++..+.+...       .....+.++.+|.++|..+..|+-++..+-...    ..++-.++.+..++-++
T Consensus       589 ~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~  668 (769)
T PF05911_consen  589 SEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRL  668 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3344455555555555544       444788888899999999999999998765544    44444666677777766


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Q psy15551        398 SKQAEEIVDLE-ALQVVSDQLQEDAK---EIE---IELKEEVEMARSATR-----------EVIREKEAALESLADRELT  459 (640)
Q Consensus       398 eELEetIeDLE-aLkELnDELEEnhv---E~E---KeLREELD~kdsqIr-----------EL~rRIeq~eEqLEDlE~T  459 (640)
                      ..+++.+..+- .+.-+..+|+.-+.   +..   ..|..++......-.           .....|..+...+.+++.|
T Consensus       669 ~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeT  748 (769)
T PF05911_consen  669 KDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQET  748 (769)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHH
Confidence            66666666666 56666666655332   222   556666655543221           2234777888888889988


Q ss_pred             HHHHHHHHHHH
Q psy15551        460 IVKFRELVIRE  470 (640)
Q Consensus       460 IsKFRELV~~L  470 (640)
                      |..+...+..|
T Consensus       749 I~sLGkQLksL  759 (769)
T PF05911_consen  749 IASLGKQLKSL  759 (769)
T ss_pred             HHHHHHHHHhc
Confidence            87655444433

The function of this family is unknown.

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=94.72  E-value=7.2  Score=42.83  Aligned_cols=188  Identities=17%  Similarity=0.129  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q psy15551        332 SKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-AL  410 (640)
Q Consensus       332 ~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aL  410 (640)
                      .+.-.-+++-..+..+|+.+.++|+.+|..+..-+..-+-..+   -+|..|-.+.++|.-++-++.++...+.+.| .-
T Consensus        88 r~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q---~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeees  164 (401)
T PF06785_consen   88 RKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQ---HLEGLIRHLREENQCLQLQLDALQQECGEKEEES  164 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHH
Confidence            3344556666777777888888888888777665555544333   3566688888888888888887777776655 33


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------cC
Q psy15551        411 QVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESL----------AD  480 (640)
Q Consensus       411 kELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL~----------~~  480 (640)
                      ..++.|           |.+.+.+...-..+.+.-+..+...+...+.-|++++..|++|--++..++          +.
T Consensus       165 q~LnrE-----------LaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~~e~~p~  233 (401)
T PF06785_consen  165 QTLNRE-----------LAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLESDMKESMPS  233 (401)
T ss_pred             HHHHHH-----------HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Confidence            343333           345555555666666666677777777777788888888877766665441          11


Q ss_pred             hhh---HHh-h--HHhhhhhhhhcchHHHHHHHhHhHhhcCCCCCCCCCCchHHHHHHHHHHh
Q psy15551        481 REL---TIV-K--FRELNSLDEKVSTENIEKCVTYFNTFYPVLFPDTKFSHVGHLLMDYVKIL  537 (640)
Q Consensus       481 ~~~---~~~-~--~sasKA~~k~IEaeqA~~hl~~l~~FLPdsF~~~GGD~DsVl~lLlf~RL  537 (640)
                      .+.   -++ +  ++.-|.-+-.++--.+.++++-.+.|-.++=    .-|-|+-+.=+|+-|
T Consensus       234 ~~~~~s~~v~~ql~selkkivf~~enie~A~slTasry~~~e~s----vhnysLdcRrLfDsL  292 (401)
T PF06785_consen  234 TPSPSSQDVPKQLVSELKKIVFKVENIEAASSLTASRYINSESS----VHNYSLDCRRLFDSL  292 (401)
T ss_pred             CCcchhhhhHHHHHHHHHHHHHHHhhHHHHHHhhHHhhhccCCc----cccchHHHHHHHhhh
Confidence            111   111 1  3444544444455556666665555554431    125555544444444

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=94.69  E-value=2.2  Score=49.68  Aligned_cols=102  Identities=13%  Similarity=0.216  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------
Q psy15551        325 AHEKHEMSKLQKDIEEKKQE---------------NAELIKSQEKLKQRVTELEADCADLHEQVDAA-------------  376 (640)
Q Consensus       325 ~~~k~~~~~~~~~~e~~~~~---------------~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a-------------  376 (640)
                      ...+.++...+..++.+++.               ++++.......+.+...+++....++.++...             
T Consensus       204 ~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~  283 (754)
T TIGR01005       204 ADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQ  283 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCc
Confidence            55556666666666666543               33333334444444444555555555555321             


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy15551        377 LGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEI  426 (640)
Q Consensus       377 ~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EK  426 (640)
                      ++..+.+..|..+...++.++.++...+.+-- .+..+..++.+.+.+...
T Consensus       284 ~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~  334 (754)
T TIGR01005       284 LKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRS  334 (754)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            12236777777777777777777777654443 455555555555554443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.63  E-value=5.6  Score=40.08  Aligned_cols=121  Identities=17%  Similarity=0.195  Sum_probs=65.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEI  404 (640)
Q Consensus       325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetI  404 (640)
                      .+.+..|..+..+...+..-+..+....+.|+.++...+.+...|..---..--.+..+..|.-.+..|+.++..++.+-
T Consensus        44 ~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Er  123 (201)
T PF13851_consen   44 ERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQER  123 (201)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555555555555555566666666666665555544433344456666666666666666666666666


Q ss_pred             HHHH-H----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy15551        405 VDLE-A----LQVVSDQLQEDAKEIE---IELKEEVEMARSATREVIRE  445 (640)
Q Consensus       405 eDLE-a----LkELnDELEEnhvE~E---KeLREELD~kdsqIrEL~rR  445 (640)
                      ++|. .    +.++......-+.=++   ..|.+.++.+++++.+....
T Consensus       124 deL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~  172 (201)
T PF13851_consen  124 DELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAA  172 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6665 2    2233322222222222   55666666666666655543

>KOG0964|consensus

Probab=94.51  E-value=16  Score=44.88  Aligned_cols=95  Identities=20%  Similarity=0.190  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        380 EEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADREL  458 (640)
Q Consensus       380 EEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~  458 (640)
                      ...++.|..-..+..+....+...+.+++ .+.+..+++.+...... +.+-.++..++.+.++.++.......-..+=.
T Consensus       396 r~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~-e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWR  474 (1200)
T KOG0964|consen  396 RSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSIN-ETKGRMEEFDAENTELKRELDELQDKRKELWR  474 (1200)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666666777777777777777 66666666665555443 44445555555555555555554444444444


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy15551        459 TIVKFRELVIREKEAAL  475 (640)
Q Consensus       459 TIsKFRELV~~LQedLe  475 (640)
                      .-.+.+..+..+.+++.
T Consensus       475 EE~~l~~~i~~~~~dl~  491 (1200)
T KOG0964|consen  475 EEKKLRSLIANLEEDLS  491 (1200)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444555555555444

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=94.10  E-value=15  Score=42.71  Aligned_cols=143  Identities=22%  Similarity=0.331  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q psy15551         36 SAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAE-FKAKIMESQAGLKRELEKLKQEKQEAVEAKE---DTADLV  111 (640)
Q Consensus        36 ~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~-~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e---~~~d~~  111 (640)
                      ..+|-..|+-.--..-.|=|=|++.+|..-    +...+ ++.-+ ...-||.. +..|+..+..+.....   ...++.
T Consensus       135 ~~~~i~~ilp~~~~~~FfFDGE~I~~la~~----~~~~~~l~~Ai-~~LlGl~~-~~~L~~dl~~~~~~~~~~~~~~~~~  208 (650)
T TIGR03185       135 WDEFINELLPLELADLFFFDGEKIEALANP----DRLASLLKEAI-EVLLGLDL-IDRLAGDLTNVLRRRKKSELPSSIL  208 (650)
T ss_pred             HHHHHHHhCCHhHHHHhcccHHHHHHHhcc----ccchHHHHHHH-HHHhCcHH-HHHHHHHHHHHHHHHHhcccchHHH
Confidence            344555555444445567788888766431    12222 22222 22333333 5555555555443222   111222


Q ss_pred             HHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q psy15551        112 ETLEMMTLDKEM--AEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLV  189 (640)
Q Consensus       112 ~~lem~tldkem--aee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLv  189 (640)
                      ..+  ..|++++  ++.+.+.+..++..++..++.+...++-+++++..  .| |+    .--...+|+.+-..++..+.
T Consensus       209 ~~~--~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~--~G-G~----~~~~r~~Le~ei~~le~e~~  279 (650)
T TIGR03185       209 SEI--EALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS--EG-GD----LFEEREQLERQLKEIEAARK  279 (650)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hc-ch----HHHHHHHHHHHHHHHHHHHH
Confidence            211  1222222  22333344444444444444444444444444433  12 21    22225566766666666655


Q ss_pred             Hhhh
Q psy15551        190 RLRD  193 (640)
Q Consensus       190 rlRd  193 (640)
                      +.++
T Consensus       280 e~~~  283 (650)
T TIGR03185       280 ANRA  283 (650)
T ss_pred             HHHH
Confidence            4443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=94.07  E-value=6.2  Score=38.33  Aligned_cols=143  Identities=19%  Similarity=0.181  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        335 QKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVS  414 (640)
Q Consensus       335 ~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLEaLkELn  414 (640)
                      ..+++...-.+..+.....++..++...+.--+.||. ||        -++|.-.|..|.++|++=...+..|-...--.
T Consensus         5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~-iD--------FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~   75 (177)
T PF13870_consen    5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHL-ID--------FEQLKIENQQLNEKIEERNKELLKLKKKIGKT   75 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH-HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555556666666666666555554444442 22        46788888999998888887777766221111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhH-Hhh
Q psy15551        415 DQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELT-IVK  487 (640)
Q Consensus       415 DELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL~~~~~~~-~~~  487 (640)
                      -..-....+....+..++......|......+......+........+.+.....+..+...+ ..|++| |+-
T Consensus        76 v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~-~~P~ll~Dy~  148 (177)
T PF13870_consen   76 VQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLL-GVPALLRDYD  148 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCcHHHHHHH
Confidence            111111122223444444444444444444444444444444444444444444443333332 567777 664

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.01  E-value=8  Score=39.39  Aligned_cols=75  Identities=24%  Similarity=0.285  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        327 EKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVD  406 (640)
Q Consensus       327 ~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeD  406 (640)
                      ...++++|+..++.....++.|......|       ......++.-|.-|=..++.++.|..---.+++.-..|-+.-..
T Consensus        20 L~~en~kL~~~ve~~ee~na~L~~e~~~L-------~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rq   92 (193)
T PF14662_consen   20 LADENAKLQRSVETAEEGNAQLAEEITDL-------RKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQ   92 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666666666665554444433       33333445555555555666666665555555555555555554


Q ss_pred             HH
Q psy15551        407 LE  408 (640)
Q Consensus       407 LE  408 (640)
                      +|
T Consensus        93 lE   94 (193)
T PF14662_consen   93 LE   94 (193)
T ss_pred             HH
Confidence            44

>KOG0980|consensus

Probab=93.95  E-value=10  Score=45.88  Aligned_cols=151  Identities=24%  Similarity=0.249  Sum_probs=77.2

Q ss_pred             hhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcHHHHHHHHHHHHH
Q psy15551        319 RLRDLSAHEKHEMSKLQKDI---EEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAA----LGAEEMVQQLSVQKL  391 (640)
Q Consensus       319 ~l~d~~~~~k~~~~~~~~~~---e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a----~gAEEMVEELTEKNl  391 (640)
                      +||+..+.....-..+++-.   ++.....-.....+++++.+.+++...-.+|..+.|..    -.++.-+.+..++|.
T Consensus       390 qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~  469 (980)
T KOG0980|consen  390 QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENT  469 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            45554454444444444443   55555566667777888888888887777777766543    223334446666666


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy15551        392 ELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLAD-RELTIVKFRELVIR  469 (640)
Q Consensus       392 eLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLED-lE~TIsKFRELV~~  469 (640)
                      +|.+.|+++...-..++ ...+..+.++....|.. -+..++......+..+...-.....++++ ..+....+-+++..
T Consensus       470 ~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~-~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~  548 (980)
T KOG0980|consen  470 NLNDQLEELQRAAGRAETKTESQAKALESLRQELA-LLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAR  548 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            66666666666665555 44444444444333332 12223333333333333333333334443 33333444444443


Q ss_pred             H
Q psy15551        470 E  470 (640)
Q Consensus       470 L  470 (640)
                      .
T Consensus       549 ~  549 (980)
T KOG0980|consen  549 E  549 (980)
T ss_pred             H
Confidence            3

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=93.88  E-value=19  Score=43.35  Aligned_cols=19  Identities=11%  Similarity=-0.005  Sum_probs=8.1

Q ss_pred             hhHHHHHHHHHHHhhhhcC
Q psy15551        583 ENIEKCVTYFNTFYPVLFP  601 (640)
Q Consensus       583 E~FEKI~~YFn~IFsvLFg  601 (640)
                      +.|--+..+==.+...+-+
T Consensus       820 E~~~~sLalrLALs~~~~~  838 (908)
T COG0419         820 ERFLASLALRLALSDLLQG  838 (908)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            4444444444444433333

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=93.76  E-value=7.4  Score=41.19  Aligned_cols=25  Identities=12%  Similarity=0.315  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551        452 SLADRELTIVKFRELVIREKEAALE  476 (640)
Q Consensus       452 qLEDlE~TIsKFRELV~~LQedLeE  476 (640)
                      .+.+....+...+..+..++..+..
T Consensus       247 ~l~~~~~~l~~~~~~l~~~~~~l~~  271 (423)
T TIGR01843       247 ELTEAQARLAELRERLNKARDRLQR  271 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444455555555555555555554

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=93.67  E-value=1.2  Score=51.55  Aligned_cols=86  Identities=19%  Similarity=0.255  Sum_probs=65.4

Q ss_pred             HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        375 AALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESL  453 (640)
Q Consensus       375 ~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqL  453 (640)
                      .-...+.+|+.|+.+|.+|+..+.+|+..|+.|+ .|..+..+..     .+.....|+..++..|..|.+++......+
T Consensus       423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-----~~~~~~rei~~~~~~I~~L~~~L~e~~~~v  497 (652)
T COG2433         423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-----DKVRKDREIRARDRRIERLEKELEEKKKRV  497 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455678888888888888888888888888888 7777766655     334556777778888888888888888888


Q ss_pred             HHHHHHHHHHHH
Q psy15551        454 ADRELTIVKFRE  465 (640)
Q Consensus       454 EDlE~TIsKFRE  465 (640)
                      +.++.++.+.+.
T Consensus       498 e~L~~~l~~l~k  509 (652)
T COG2433         498 EELERKLAELRK  509 (652)
T ss_pred             HHHHHHHHHHHH
Confidence            777777777663

>PF13514 AAA_27: AAA domain

Probab=93.56  E-value=25  Score=43.48  Aligned_cols=86  Identities=22%  Similarity=0.269  Sum_probs=60.7

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy15551        111 VETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVR  190 (640)
Q Consensus       111 ~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvr  190 (640)
                      .+.++-..-..+.++++...++.+++.+..+...+...++..+......+...|-++..++..+...-..-..+++.+..
T Consensus       665 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~  744 (1111)
T PF13514_consen  665 LEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREALAE  744 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34445555566777777888888888888888888888888887777665555666666777776666666677777777


Q ss_pred             hhhchh
Q psy15551        191 LRDLSA  196 (640)
Q Consensus       191 lRd~s~  196 (640)
                      ++++..
T Consensus       745 ~~~~~~  750 (1111)
T PF13514_consen  745 IRELRR  750 (1111)
T ss_pred             HHHHHH
Confidence            666653

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=93.54  E-value=0.02  Score=66.26  Aligned_cols=125  Identities=25%  Similarity=0.318  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDL  407 (640)
Q Consensus       328 k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDL  407 (640)
                      ++.++.....++....+.++++-....|..++..-.+-..+.-..++.--.+-.-|..|-..+..|-+++..+...+..+
T Consensus       290 ~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l  369 (722)
T PF05557_consen  290 KRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELREL  369 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            33344444444555566666666666666666665554444322334433444556777788888888888888888888


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        408 E-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESL  453 (640)
Q Consensus       408 E-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqL  453 (640)
                      + .+.++..+......+.. .++..+......+..+.++..-....+
T Consensus       370 ~~~~~~Le~e~~~l~~~~~-~l~~~~~~~~~~~~RLerq~~L~~kE~  415 (722)
T PF05557_consen  370 EEEIQELEQEKEQLLKEIE-ELEASLEALKKLIRRLERQKALATKER  415 (722)
T ss_dssp             -----------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8 66666666655443332 233333333344444444433333333

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.50  E-value=1.3  Score=43.85  Aligned_cols=88  Identities=24%  Similarity=0.410  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy15551        334 LQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQV  412 (640)
Q Consensus       334 ~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkE  412 (640)
                      +..-+-....+++++.+++..+.++|..+...+..+...+-.   -...|..|+..+-.|+.++..+...|.+.. .+..
T Consensus        72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~---~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~  148 (194)
T PF08614_consen   72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSE---KERRLAELEAELAQLEEKIKDLEEELKEKNKANEI  148 (194)
T ss_dssp             ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445556666666666667777776666666554432   335588888888899999999999999988 8888


Q ss_pred             HHHHHHHHHHHH
Q psy15551        413 VSDQLQEDAKEI  424 (640)
Q Consensus       413 LnDELEEnhvE~  424 (640)
                      ++||+...++++
T Consensus       149 l~DE~~~L~l~~  160 (194)
T PF08614_consen  149 LQDELQALQLQL  160 (194)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888888766

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0612|consensus

Probab=93.48  E-value=27  Score=43.83  Aligned_cols=107  Identities=20%  Similarity=0.307  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH----HHHHHHHHHHHHHHHH
Q psy15551        325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQ----QLSVQKLELEDLVSKQ  400 (640)
Q Consensus       325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVE----ELTEKNleLEEKIeEL  400 (640)
                      ++...+++-++.+++....|+..+         +|+..++.|...-.-|..--.+..-++    +++.+..-|.-.....
T Consensus       670 ~~~e~~lk~~q~~~eq~~~E~~~~---------~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~  740 (1317)
T KOG0612|consen  670 IKLERKLKMLQNELEQENAEHHRL---------RLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQS  740 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---------HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            444455566666666555555443         334445555555555544444433333    3444444443333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        401 AEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSATREVI  443 (640)
Q Consensus       401 EetIeDLEaLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~  443 (640)
                      +....   .++-..+.+...-..++..|.+|++.+..--+++.
T Consensus       741 ~~~~~---~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLs  780 (1317)
T KOG0612|consen  741 QEKLN---ELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELK  780 (1317)
T ss_pred             ccchh---hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence            32333   33444555555556666777888888777777776

>KOG0250|consensus

Probab=93.42  E-value=26  Score=43.43  Aligned_cols=82  Identities=23%  Similarity=0.299  Sum_probs=46.0

Q ss_pred             HHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcc--hHHHHHHHHHHHH
Q psy15551        107 TADLVETL-EMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVS--HYQIKQLEQQNMR  183 (640)
Q Consensus       107 ~~d~~~~l-em~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~--~~~~~qle~qN~r  183 (640)
                      ++++.+.+ .-++-+.+=.+.+.+.|+.+++.+.+-+..|..+.+-++.++..      .+++..  -..+.+|.++..-
T Consensus       381 I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~------~~ee~~~i~~~i~~l~k~i~~  454 (1074)
T KOG0250|consen  381 IADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKE------EEEEKEHIEGEILQLRKKIEN  454 (1074)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHH
Confidence            34444333 44444445555566666666666666666666666655555443      122222  2467777777777


Q ss_pred             HHHHHHHhhhc
Q psy15551        184 LRETLVRLRDL  194 (640)
Q Consensus       184 LreaLvrlRd~  194 (640)
                      ..+.|-.|++.
T Consensus       455 ~~~~l~~lk~~  465 (1074)
T KOG0250|consen  455 ISEELKDLKKT  465 (1074)
T ss_pred             HHHHHHHHHhc
Confidence            77776666654

>KOG0994|consensus

Probab=93.32  E-value=29  Score=43.63  Aligned_cols=72  Identities=19%  Similarity=0.161  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhhch
Q psy15551        124 AEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLS  195 (640)
Q Consensus       124 aee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlRd~s  195 (640)
                      |--+|-.++.+|...+...+++-.-|-..|....+....+..+-+++..-.-|+++-|.+|+.-..-+||.-
T Consensus      1413 A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Fl 1484 (1758)
T KOG0994|consen 1413 ALLMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFL 1484 (1758)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444555555555555555544433333222222221112233445566667899999999999999999865

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=93.14  E-value=15  Score=39.81  Aligned_cols=86  Identities=12%  Similarity=0.201  Sum_probs=62.5

Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        377 LGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE--IELKEEVEMARSATREVIREKEAALESL  453 (640)
Q Consensus       377 ~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E--KeLREELD~kdsqIrEL~rRIeq~eEqL  453 (640)
                      .++.+.+..-++.+...+++|..|-.+|-++. .++.+..|-++.+..+.  ++-+..   +...+.+++.+-......+
T Consensus       216 a~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~---L~aEL~elqdkY~E~~~mL  292 (306)
T PF04849_consen  216 ASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQ---LQAELQELQDKYAECMAML  292 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            46677788888889999999999999999999 88888877777665554  333333   3455677777777777777


Q ss_pred             HHHHHHHHHHHH
Q psy15551        454 ADRELTIVKFRE  465 (640)
Q Consensus       454 EDlE~TIsKFRE  465 (640)
                      .+.+..+.++|.
T Consensus       293 ~EaQEElk~lR~  304 (306)
T PF04849_consen  293 HEAQEELKTLRK  304 (306)
T ss_pred             HHHHHHHHHhhC
Confidence            777666666653

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>TIGR02977 phageshock_pspA phage shock protein A

Probab=93.10  E-value=11  Score=38.10  Aligned_cols=94  Identities=22%  Similarity=0.412  Sum_probs=69.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL--GAEEMVQQLSVQKLELEDLVSKQAE  402 (640)
Q Consensus       325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~--gAEEMVEELTEKNleLEEKIeELEe  402 (640)
                      .-...-+..+..++.+.+..++........++.++..++..+.++..+.-.|+  |-|++-...-.+....++.+..|+.
T Consensus        27 ~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~  106 (219)
T TIGR02977        27 KMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALER  106 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677888899999999999999999999999999999999999998887  5556666565566666666665555


Q ss_pred             HHHHHH-HHHHHHHHHH
Q psy15551        403 EIVDLE-ALQVVSDQLQ  418 (640)
Q Consensus       403 tIeDLE-aLkELnDELE  418 (640)
                      .+..+. .+..+...+.
T Consensus       107 ~~~~~~~~v~~l~~~l~  123 (219)
T TIGR02977       107 ELAAVEETLAKLQEDIA  123 (219)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            555544 3433333333

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=93.06  E-value=6.6  Score=44.78  Aligned_cols=122  Identities=14%  Similarity=0.156  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHH
Q psy15551        348 LIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQ--VVSDQLQEDAKEI  424 (640)
Q Consensus       348 l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLk--ELnDELEEnhvE~  424 (640)
                      |...+-.|+......++-+..++..-..-.|+   ++.|......-+++|+.|++.+..|- +++  .++-+=-+.....
T Consensus       300 l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~---l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~E  376 (622)
T COG5185         300 LREKWRALKSDSNKYENYVNAMKQKSQEWPGK---LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQE  376 (622)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            33333334444444444444455554445554   66666666666666666666666665 332  2333323333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        425 EIELKEEVEMARSATREVIREKEAA----LESLADRELTIVKFRELVIREKE  472 (640)
Q Consensus       425 EKeLREELD~kdsqIrEL~rRIeq~----eEqLEDlE~TIsKFRELV~~LQe  472 (640)
                      ...|-.+++....++.++..-+...    +..+..++.+..+|..+..++.-
T Consensus       377 re~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~  428 (622)
T COG5185         377 REKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITR  428 (622)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3677888888888887777655543    44555577777777766665543

>KOG0999|consensus

Probab=93.02  E-value=22  Score=41.47  Aligned_cols=83  Identities=22%  Similarity=0.248  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH--H
Q psy15551        354 KLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQ-----LQEDAKEIE--I  426 (640)
Q Consensus       354 ~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLEaLkELnDE-----LEEnhvE~E--K  426 (640)
                      .|-+.-+++|..-..|+-||-.--|..-..|-|.-.+-.|+|.++-|+..+++...|+++.+-     |+..+.+-+  .
T Consensus       167 RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~  246 (772)
T KOG0999|consen  167 RLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKN  246 (772)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            344455566777777777777777777788899999999999999999999999988877653     333333333  6


Q ss_pred             HHHHHHHHHH
Q psy15551        427 ELKEEVEMAR  436 (640)
Q Consensus       427 eLREELD~kd  436 (640)
                      .|+.|++.-.
T Consensus       247 alkkEL~q~~  256 (772)
T KOG0999|consen  247 ALKKELSQYR  256 (772)
T ss_pred             HHHHHHHHhc
Confidence            7777776543

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=92.97  E-value=25  Score=41.87  Aligned_cols=40  Identities=15%  Similarity=0.155  Sum_probs=29.8

Q ss_pred             HHHHHHHhhcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        369 LHEQVDAALGA-EEMVQQLSVQKLELEDLVSKQAEEIVDLE  408 (640)
Q Consensus       369 l~~q~d~a~gA-EEMVEELTEKNleLEEKIeELEetIeDLE  408 (640)
                      +|.-|=.|||- .-.+|.+......-+.+|.+|+..|.++-
T Consensus       616 iKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~  656 (697)
T PF09726_consen  616 IKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL  656 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555566664 47788888888888888888888888765

; GO: 0016021 integral to membrane

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=92.95  E-value=15  Score=39.83  Aligned_cols=102  Identities=12%  Similarity=0.202  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------HHHHHHHHH
Q psy15551        325 AHEKHEMSKLQKDIEEKKQENAEL---------IKSQEKLKQRVTELEADCADLHEQVDAALG--------AEEMVQQLS  387 (640)
Q Consensus       325 ~~~k~~~~~~~~~~e~~~~~~~~l---------~~~~~~l~~kL~~~e~~~~~l~~q~d~a~g--------AEEMVEELT  387 (640)
                      +..+.++...+..+..+++++.-+         ......+..++..+.+...+........-+        ..+.+..|.
T Consensus       181 ~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  260 (444)
T TIGR03017       181 AALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIANPIIQNLK  260 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcChHHHHHH
Confidence            555566666666666655544211         122233334444444444444333322111        224455566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy15551        388 VQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEI  426 (640)
Q Consensus       388 EKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EK  426 (640)
                      .+..+++.++.++...+.+-. .+..+..++.........
T Consensus       261 ~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~  300 (444)
T TIGR03017       261 TDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA  300 (444)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            666666666666665554433 555555555555554443

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=92.85  E-value=5.4  Score=44.10  Aligned_cols=41  Identities=12%  Similarity=0.096  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy15551        385 QLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE  425 (640)
Q Consensus       385 ELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E  425 (640)
                      .+..+..+++.++.++...+.+-. .+..+..++...+....
T Consensus       251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~  292 (498)
T TIGR03007       251 ELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKE  292 (498)
T ss_pred             chHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence            445555566666666665555544 66666777666665543

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0980|consensus

Probab=92.77  E-value=30  Score=42.27  Aligned_cols=106  Identities=16%  Similarity=0.111  Sum_probs=61.8

Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q psy15551        369 LHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE------IELKEEVEMARSATRE  441 (640)
Q Consensus       369 l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E------KeLREELD~kdsqIrE  441 (640)
                      -+.|.+.|.+.   +++...++...+.+++.+++.+..|. .-.++-..+-....+.+      -.+.+++..++-++.+
T Consensus       401 ~r~q~eka~~~---~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~  477 (980)
T KOG0980|consen  401 SRTQLEKAQVL---VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEE  477 (980)
T ss_pred             HHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            34556666665   78888888888888888888888777 33333333333333333      3444555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551        442 VIREKEAALESLADRELTIVKFRELVIREKEAALES  477 (640)
Q Consensus       442 L~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL  477 (640)
                      +.+.........++.......+|.....++.+++.+
T Consensus       478 ~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~l  513 (980)
T KOG0980|consen  478 LQRAAGRAETKTESQAKALESLRQELALLLIELEEL  513 (980)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555544455555555556666666555555543

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.58  E-value=4.1  Score=38.36  Aligned_cols=63  Identities=16%  Similarity=0.294  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy15551        331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLEL  393 (640)
Q Consensus       331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleL  393 (640)
                      +..+.-++-.++.+++.+....+.+.+++..+-..++.++......-.++..+.+|..+...+
T Consensus        25 lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~   87 (120)
T PF12325_consen   25 LRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL   87 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445555555555555555555555555555555555544445555555555554444

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>smart00787 Spc7 Spc7 kinetochore protein

Probab=92.54  E-value=16  Score=39.42  Aligned_cols=175  Identities=16%  Similarity=0.160  Sum_probs=93.0

Q ss_pred             hhhhhhhhhcccccc---chhhchhhhhhhccccccchhhhhhhhhhhhccccccchh------hhhhhhhhhhcccccc
Q psy15551        228 RDLSAHEIFNNNKFD---SRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSR------LRDLSAHEIFNNNKFD  298 (640)
Q Consensus       228 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  298 (640)
                      .+.|-|+++....-+   --||..|.+|+..+-..-...++++.++-.-+|+.-|-.-      +|.+--+.+-| -|  
T Consensus        47 ~~~sl~~~v~A~~~~iP~LElY~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~l-vK--  123 (312)
T smart00787       47 EDCSLDQYVVAGYCTVPLLELYQFSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQL-VK--  123 (312)
T ss_pred             CCCCHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHH-HH--
Confidence            456677766443333   3578888888877766666667777766655666555322      22222222211 11  


Q ss_pred             hhhhhhhhhhhhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15551        299 SRLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALG  378 (640)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~l~d~~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~g  378 (640)
                      +--|-.|-...|+=..+...   .+.......+..++.|-+.+....+.+...+..+..+...+...+..|++.++..-.
T Consensus       124 ~~aRl~ak~~WYeWR~klle---gLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~  200 (312)
T smart00787      124 TFARLEAKKMWYEWRMKLLE---GLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED  200 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence            11233455555555555533   334444455566666666666666666666666777777777777777666654221


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        379 A-EEMVQQLSVQKLELEDLVSKQAEEIVDLE  408 (640)
Q Consensus       379 A-EEMVEELTEKNleLEEKIeELEetIeDLE  408 (640)
                      . -+.+..+.++...+..++......+.+++
T Consensus       201 ~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~  231 (312)
T smart00787      201 CDPTELDRAKEKLKKLLQEIMIKVKKLEELE  231 (312)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 12333344444444444444444433333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.36  E-value=2.4  Score=50.20  Aligned_cols=42  Identities=33%  Similarity=0.462  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551        336 KDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL  377 (640)
Q Consensus       336 ~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~  377 (640)
                      +++.+..++...+....++|..+...+...-+.|-..++..+
T Consensus       579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl  620 (717)
T PF10168_consen  579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVL  620 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444554455555444444444444443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=92.31  E-value=19  Score=39.04  Aligned_cols=97  Identities=18%  Similarity=0.197  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H---
Q psy15551        381 EMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEA-------A---  449 (640)
Q Consensus       381 EMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq-------~---  449 (640)
                      -+|..|..+...|+-+...+..+++.|. .--++-..|+.-+--+-..|.+.++.+...-+-++.++.+       .   
T Consensus       135 ~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~  214 (310)
T PF09755_consen  135 YLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDT  214 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchH
Confidence            4567777777777666655555555544 3333344444333334467777777777777777777663       0   


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551        450 ------LESLADRELTIVKFRELVIREKEAALES  477 (640)
Q Consensus       450 ------eEqLEDlE~TIsKFRELV~~LQedLeEL  477 (640)
                            ....+....-|...|+.|..|..+|...
T Consensus       215 ~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~s  248 (310)
T PF09755_consen  215 VNVSEENDTAERLSSHIRSLRQEVSRLRQQLAAS  248 (310)
T ss_pred             HhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  1122446666778888888888888755

>TIGR00634 recN DNA repair protein RecN

Probab=92.20  E-value=25  Score=40.14  Aligned_cols=56  Identities=16%  Similarity=0.189  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q psy15551        128 AETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETL  188 (640)
Q Consensus       128 ~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaL  188 (640)
                      ...++.++..++.+..++..+++.++..+++.....     ..+..+..|+.+..||..+-
T Consensus       170 ~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~-----l~~~E~e~L~~e~~~L~n~e  225 (563)
T TIGR00634       170 WLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEAD-----LQPGEDEALEAEQQRLSNLE  225 (563)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCC-----cCCCcHHHHHHHHHHHhCHH
Confidence            334444455555555555566666665555543331     23445678888888876553

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=92.05  E-value=2.9  Score=42.69  Aligned_cols=122  Identities=21%  Similarity=0.320  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551         75 FKAKIMESQAGLK---RELEKLKQEKQEAVEAKE----DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTL  147 (640)
Q Consensus        75 ~k~~~~~~~~~~~---~el~~~k~~~~e~~~~~e----~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~l  147 (640)
                      .|..+-++|+++-   .||-.||..++++.....    .+.++.+++.--++.-|+.+........|.+.+++++..|+-
T Consensus        15 LKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~   94 (202)
T PF06818_consen   15 LKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEA   94 (202)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHH
Confidence            4455556666653   456667777777654443    678888999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhhhcCCC--------CCC----CCcchHHHHHHHHHHHHHHHHHHHhhhchh
Q psy15551        148 DIELMKADIEKSCDGA--------GDG----TEVSHYQIKQLEQQNMRLRETLVRLRDLSA  196 (640)
Q Consensus       148 e~e~lk~e~e~~~~~~--------~~~----~~~~~~~~~qle~qN~rLreaLvrlRd~s~  196 (640)
                      ++.-|+......+.+.        +++    ....+.....|..+-+|||..|.+.|.-..
T Consensus        95 El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e  155 (202)
T PF06818_consen   95 ELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRRE  155 (202)
T ss_pred             HHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHH
Confidence            9999998877742110        000    001233466788999999999999998764

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG4593|consensus

Probab=91.92  E-value=33  Score=40.86  Aligned_cols=124  Identities=16%  Similarity=0.181  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy15551        351 SQEKLKQRVTELEADCADLHEQV----DAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE  425 (640)
Q Consensus       351 ~~~~l~~kL~~~e~~~~~l~~q~----d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E  425 (640)
                      ....+.++-.-+-.++.||..-.    |.-..+..++...|.+...+..-|..+...--+.+ ...++..++.......+
T Consensus       392 tl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e  471 (716)
T KOG4593|consen  392 TLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLE  471 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHH
Confidence            33344445555566666666655    34445556777777777777766666666666666 55555555555444443


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        426 ------IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAA  474 (640)
Q Consensus       426 ------KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedL  474 (640)
                            +.|...+......+.-....++-..+-++++...+.-.+..-..+...+
T Consensus       472 ~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~  526 (716)
T KOG4593|consen  472 KLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQL  526 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  6666666666666665555555556666666666666666665555443

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=91.85  E-value=22  Score=38.61  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhch
Q psy15551        174 IKQLEQQNMRLRETLVRLRDLS  195 (640)
Q Consensus       174 ~~qle~qN~rLreaLvrlRd~s  195 (640)
                      ++.||..|.+||.---+|+.-+
T Consensus       169 lk~LEeEN~~LR~Ea~~L~~et  190 (306)
T PF04849_consen  169 LKSLEEENEQLRSEASQLKTET  190 (306)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHH
Confidence            5668889999998888888555

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=91.72  E-value=14  Score=35.95  Aligned_cols=69  Identities=22%  Similarity=0.417  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        337 DIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE  408 (640)
Q Consensus       337 ~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE  408 (640)
                      ++.+.++..+.+.+....+..++.........++.......   +..+...++...+.+.+..+..++.++.
T Consensus        82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen   82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR---ELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444444333   3344555555555555555555555554

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=91.29  E-value=13  Score=34.87  Aligned_cols=29  Identities=10%  Similarity=0.186  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        426 IELKEEVEMARSATREVIREKEAALESLA  454 (640)
Q Consensus       426 KeLREELD~kdsqIrEL~rRIeq~eEqLE  454 (640)
                      ..|..++......+.++..+..-+..+|+
T Consensus       101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE  129 (132)
T PF07926_consen  101 EQLEKELSELEQRIEDLNEQNKLLHDQLE  129 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66677777777777777766666666655

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=91.21  E-value=5.4  Score=46.52  Aligned_cols=82  Identities=21%  Similarity=0.376  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        327 EKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVD  406 (640)
Q Consensus       327 ~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeD  406 (640)
                      -..++.++.+-++.+..+|.+|....+.++..+..+++.|+.++..++.-.+-.-.++.+-.++..|+-++.+-...++.
T Consensus       420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~  499 (652)
T COG2433         420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEE  499 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567777777888888888888888888888888888888888887766666666666666666666666666666666


Q ss_pred             HH
Q psy15551        407 LE  408 (640)
Q Consensus       407 LE  408 (640)
                      |+
T Consensus       500 L~  501 (652)
T COG2433         500 LE  501 (652)
T ss_pred             HH
Confidence            55

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=90.80  E-value=20  Score=36.29  Aligned_cols=63  Identities=21%  Similarity=0.339  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy15551        355 LKQRVTELEADCADLHEQVDAALG-----AEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQL  417 (640)
Q Consensus       355 l~~kL~~~e~~~~~l~~q~d~a~g-----AEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDEL  417 (640)
                      ++..+..+-+..+.|+.+|+.++.     ....+..+..+...+..++..++..++.+. .+......+
T Consensus        25 ~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l   93 (302)
T PF10186_consen   25 LRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERL   93 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445555555555555555     334455555555555555555555555544 443333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=90.73  E-value=55  Score=41.14  Aligned_cols=146  Identities=12%  Similarity=0.134  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH---------HHHHHHHH
Q psy15551        331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLEL---------EDLVSKQA  401 (640)
Q Consensus       331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleL---------EEKIeELE  401 (640)
                      -.+|-+.+....+....+...+...++.+.........++||+...-|.--.=+-|-.+...|         ..+|.++.
T Consensus       267 N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~~Q~~~LP~~~~~~~l~~~IAdlR  346 (1109)
T PRK10929        267 NRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALRAQVARLPEMPKPQQLDTEMAQLR  346 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhCCCCcccchhHHHHHHHH
Confidence            345556666666677777777888888888888888889999987666555445555544443         33344333


Q ss_pred             HHHHHHHH-HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        402 EEIVDLEA-LQVVSDQLQEDA--------KEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKE  472 (640)
Q Consensus       402 etIeDLEa-LkELnDELEEnh--------vE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQe  472 (640)
                      -..=++++ ..++.. +....        -+..+.|..-++.+..-+..+.+....+-..+..++..-.+..+.+.++++
T Consensus       347 l~~f~~~q~~~~l~~-i~~~~~~~~~~~t~~~~~~l~~ll~~rr~LL~~L~~~~~~~l~~l~~L~~~q~QL~~~~~~l~~  425 (1109)
T PRK10929        347 VQRLRYEDLLNKQPQ-LRQIRQADGQPLTAEQNRILDAQLRTQRELLNSLLSGGDTLILELTKLKVANSQLEDALKEVNE  425 (1109)
T ss_pred             HHHHHHHHHHHHhhh-hHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333331 111110 11110        111244555556677777788888888888888888999999999999998


Q ss_pred             HHHhh
Q psy15551        473 AALES  477 (640)
Q Consensus       473 dLeEL  477 (640)
                      -+.+.
T Consensus       426 ~L~~~  430 (1109)
T PRK10929        426 ATHRY  430 (1109)
T ss_pred             HHHHh
Confidence            88765

>PRK10884 SH3 domain-containing protein; Provisional

Probab=90.50  E-value=4.7  Score=41.04  Aligned_cols=78  Identities=10%  Similarity=0.230  Sum_probs=49.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEI  404 (640)
Q Consensus       325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetI  404 (640)
                      .+.+..+.++++++.+.+.+++++..+   ..++..+       +++.++.   +...+.+|..+|..|.+++..++.++
T Consensus        89 p~~~~rlp~le~el~~l~~~l~~~~~~---~~~~~~~-------l~~~~~~---~~~~~~~L~~~n~~L~~~l~~~~~~~  155 (206)
T PRK10884         89 PSLRTRVPDLENQVKTLTDKLNNIDNT---WNQRTAE-------MQQKVAQ---SDSVINGLKEENQKLKNQLIVAQKKV  155 (206)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHH-------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667777777777777777665544   2223333       3333332   34446668888888888888888888


Q ss_pred             HHHH-HHHHHHH
Q psy15551        405 VDLE-ALQVVSD  415 (640)
Q Consensus       405 eDLE-aLkELnD  415 (640)
                      +.++ .+..+.+
T Consensus       156 ~~l~~~~~~~~~  167 (206)
T PRK10884        156 DAANLQLDDKQR  167 (206)
T ss_pred             HHHHHHHHHHHH
Confidence            8877 4444443

>KOG0612|consensus

Probab=90.45  E-value=59  Score=41.10  Aligned_cols=25  Identities=12%  Similarity=0.054  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        451 ESLADRELTIVKFRELVIREKEAAL  475 (640)
Q Consensus       451 EqLEDlE~TIsKFRELV~~LQedLe  475 (640)
                      +..-.+...-.+....|..|+..|+
T Consensus       742 ~~~~~l~r~~~~~~~~vl~Lq~~LE  766 (1317)
T KOG0612|consen  742 EKLNELRRSKDQLITEVLKLQSMLE  766 (1317)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHHH
Confidence            3444445555556666666666666

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=90.43  E-value=33  Score=38.08  Aligned_cols=35  Identities=9%  Similarity=0.174  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q psy15551        122 EMAEERAETLQVELDLAKEKIEELTLDIELMKADI  156 (640)
Q Consensus       122 emaee~~e~l~~el~~~k~k~eel~le~e~lk~e~  156 (640)
                      ..+....+-++.++..++.++++.+..+.-.+.+.
T Consensus       157 ~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~  191 (498)
T TIGR03007       157 QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQEN  191 (498)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44556677788888888888888888888887554

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0978|consensus

Probab=90.38  E-value=47  Score=39.78  Aligned_cols=104  Identities=15%  Similarity=0.122  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        356 KQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEM  434 (640)
Q Consensus       356 ~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~  434 (640)
                      +.....++..+..|++|+..--+.   +..+..+...+...++.++..+.++. .+..+               +.+++.
T Consensus       516 ~~~~~~~~~~i~~leeq~~~lt~~---~~~l~~el~~~~~~le~~kk~~~e~~~~~~~L---------------q~~~ek  577 (698)
T KOG0978|consen  516 KASVDKLELKIGKLEEQERGLTSN---ESKLIKELTTLTQSLEMLKKKAQEAKQSLEDL---------------QIELEK  577 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHH
Confidence            333344455555555555533322   22233333333444444444444444 33333               333444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551        435 ARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALES  477 (640)
Q Consensus       435 kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL  477 (640)
                      -.+.+..++.+..+....+++....-.+..+....+...+...
T Consensus       578 ~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~  620 (698)
T KOG0978|consen  578 SEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERL  620 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444455555555555555555555555555556665555543

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=90.21  E-value=42  Score=39.03  Aligned_cols=74  Identities=19%  Similarity=0.309  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy15551        350 KSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEI  424 (640)
Q Consensus       350 ~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~  424 (640)
                      +...++..++..++..++++..++..+-+- +.+..+.++...++.++.+++..+..+. .+..+..+++....+.
T Consensus       391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~-e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  465 (650)
T TIGR03185       391 DAKSQLLKELRELEEELAEVDKKISTIPSE-EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL  465 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444556667778888888888888877654 4677777777777777777777777776 6666666655544443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=90.13  E-value=31  Score=37.32  Aligned_cols=147  Identities=17%  Similarity=0.236  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy15551        331 MSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDL---  407 (640)
Q Consensus       331 ~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDL---  407 (640)
                      .+.+...-.++..++.+|......+-.++.++-..+..+.+..+-.-+.-.-+..+......|+-...+..-+.+.-   
T Consensus        57 ~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~l  136 (294)
T COG1340          57 AQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEEREL  136 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            33344444555566666777777777777888888888888888442222224445555555554444322221111   


Q ss_pred             -HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551        408 -EALQVVSDQLQEDAKEIE-----IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALES  477 (640)
Q Consensus       408 -EaLkELnDELEEnhvE~E-----KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL  477 (640)
                       ..+.++..+|+.-....+     .+|..+++......+++..+|..+...+..+-..+.+.-.....+.....++
T Consensus       137 vq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~  212 (294)
T COG1340         137 VQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADEL  212 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             123334444443333222     5555666666666666666666666666655555555555555555444443

>KOG0963|consensus

Probab=89.60  E-value=50  Score=38.97  Aligned_cols=43  Identities=28%  Similarity=0.428  Sum_probs=27.2

Q ss_pred             hhHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcC
Q psy15551        119 LDKEMAEERAE--TLQVELDLAKEKIEELTLDIELMKADIEKSCD  161 (640)
Q Consensus       119 ldkemaee~~e--~l~~el~~~k~k~eel~le~e~lk~e~e~~~~  161 (640)
                      .|.|.+-.-++  ..-.+|+-++.+|..|+.+++.|+........
T Consensus       226 ~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~  270 (629)
T KOG0963|consen  226 YDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANS  270 (629)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            35555544443  34557777777788888888888777665433

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=89.60  E-value=71  Score=40.74  Aligned_cols=67  Identities=18%  Similarity=0.182  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhh
Q psy15551        124 AEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLR  192 (640)
Q Consensus       124 aee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlR  192 (640)
                      |+..+.....+++.+.+++....-.+.-.+.+....|.+-+-+  .+...+-++..--..++.+|..++
T Consensus       798 A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~aaa~l~L~--a~~~~l~~~~~aL~~y~~~l~~l~  864 (1353)
T TIGR02680       798 AERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLP--TDPDALEAVGLALKRFGDHLHTLE  864 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CChhHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555556666666666666666666555555442222  233333344444444444444443

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.22  E-value=8.9  Score=39.76  Aligned_cols=94  Identities=24%  Similarity=0.323  Sum_probs=68.8

Q ss_pred             hHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHHH
Q psy15551         55 YREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE----DTADLVETLEMMTLDKEMAEERAET  130 (640)
Q Consensus        55 d~~k~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e----~~~d~~~~lem~tldkemaee~~e~  130 (640)
                      -|.|+.+|++++..+-+-.++-..-.....++..|...|.+|....++..-    |+..++..+--+.=+++=..+.+..
T Consensus         6 ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r   85 (230)
T PF10146_consen    6 IRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQR   85 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466888899988888887777777778888888888888888877766553    6666666666666666666677767


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q psy15551        131 LQVELDLAKEKIEELTLD  148 (640)
Q Consensus       131 l~~el~~~k~k~eel~le  148 (640)
                      +..|+.-+|+.|.++..+
T Consensus        86 ~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   86 LYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777766666666666554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF13514 AAA_27: AAA domain

Probab=89.08  E-value=68  Score=39.79  Aligned_cols=81  Identities=25%  Similarity=0.334  Sum_probs=50.9

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHh
Q psy15551        112 ETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRL  191 (640)
Q Consensus       112 ~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrl  191 (640)
                      ..|....-.-.-...+.+.++.+++.++.+++.+...+...+.++...+..+|..   +...+..+..+..+.++..-++
T Consensus       787 ~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~---~~e~l~~~~~~~~~~~~l~~~~  863 (1111)
T PF13514_consen  787 EALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELAELLEQAGVE---DEEELREAEERAEERRELREEL  863 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444566777888888888888888888888888888877654433   3344555555555555555555


Q ss_pred             hhch
Q psy15551        192 RDLS  195 (640)
Q Consensus       192 Rd~s  195 (640)
                      .++.
T Consensus       864 ~~~~  867 (1111)
T PF13514_consen  864 EDLE  867 (1111)
T ss_pred             HHHH
Confidence            5544

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.84  E-value=36  Score=36.32  Aligned_cols=145  Identities=12%  Similarity=0.147  Sum_probs=80.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy15551        325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAE--  402 (640)
Q Consensus       325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEe--  402 (640)
                      .+...+.+.++++|+.+...+.++......++.+.++..+.+..|+.+++..      =+.+.+++.-|.+++..+..  
T Consensus        41 ~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~------~~~I~~r~~~l~~raRAmq~nG  114 (265)
T COG3883          41 SELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL------KENIVERQELLKKRARAMQVNG  114 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHcC
Confidence            3444556667777777777777777777777777777777777777776643      34566677777777665432  


Q ss_pred             -----------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        403 -----------------EIVDLE---ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVK  462 (640)
Q Consensus       403 -----------------tIeDLE---aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsK  462 (640)
                                       -|..+.   .+-+.+..+-+++.+-+..|..--......+.++..-...++..+.+++.....
T Consensus       115 ~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e  194 (265)
T COG3883         115 TATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAE  194 (265)
T ss_pred             ChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             122222   222233334444444444444444444444444444444455555555555555


Q ss_pred             HHHHHHHHHHHHH
Q psy15551        463 FRELVIREKEAAL  475 (640)
Q Consensus       463 FRELV~~LQedLe  475 (640)
                      ...++..+..+..
T Consensus       195 ~~~l~~~~aa~~a  207 (265)
T COG3883         195 KNALIAALAAKEA  207 (265)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555554444

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=88.54  E-value=32  Score=35.38  Aligned_cols=152  Identities=19%  Similarity=0.251  Sum_probs=99.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcH---HHHHHHHHHHHHHHHHHHHHH
Q psy15551        325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAA-LGA---EEMVQQLSVQKLELEDLVSKQ  400 (640)
Q Consensus       325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a-~gA---EEMVEELTEKNleLEEKIeEL  400 (640)
                      +=.|.++...+.++..+-.++-.|......+...+...+..+.+|+..+..- +..   +..+........-|.+++..+
T Consensus        13 sLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~l   92 (202)
T PF06818_consen   13 SLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQL   92 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhh
Confidence            4468888889999999999999999999999999999999999998766431 111   122222233333344444444


Q ss_pred             HHHHHHHH-HHHHH------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        401 AEEIVDLE-ALQVV------------SDQLQE---DAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFR  464 (640)
Q Consensus       401 EetIeDLE-aLkEL------------nDELEE---nhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFR  464 (640)
                      +..+..|. .+...            .++-..   ........|+.+++.+...|....++.+.+....+.=-.+=..=+
T Consensus        93 e~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEK  172 (202)
T PF06818_consen   93 EAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEK  172 (202)
T ss_pred             HHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            44444444 33332            000000   001123678888888888888888888877777776556667778


Q ss_pred             HHHHHHHHHHHh
Q psy15551        465 ELVIREKEAALE  476 (640)
Q Consensus       465 ELV~~LQedLeE  476 (640)
                      +.|-..|.+|+.
T Consensus       173 ekVi~YQkQLQ~  184 (202)
T PF06818_consen  173 EKVIRYQKQLQQ  184 (202)
T ss_pred             HHHHHHHHHHHH
Confidence            889999998885

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=88.46  E-value=59  Score=38.34  Aligned_cols=63  Identities=19%  Similarity=0.227  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhh
Q psy15551        128 AETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLR  192 (640)
Q Consensus       128 ~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlR  192 (640)
                      +.+|..|.+....+|.+|+..|..|+..+.....  ..++.+.+-.-.+|...-..|+.-+-.|.
T Consensus        38 v~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~--~~~pa~pse~E~~Lq~E~~~L~kElE~L~  100 (617)
T PF15070_consen   38 VRTLKEEKEHDISRVQELERSLSELKNQMAEPPP--PEPPAGPSEVEQQLQAEAEHLRKELESLE  100 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC--ccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            4466677777778899999999999888776432  23333344444677777777766554443

>KOG0018|consensus

Probab=87.99  E-value=82  Score=39.44  Aligned_cols=48  Identities=13%  Similarity=0.214  Sum_probs=34.3

Q ss_pred             hHHhhhhhhhh---c---chHHHHHHHhHhHhhc--CCCCCCCCCCchHHHHHHHHHHhh
Q psy15551        487 KFRELNSLDEK---V---STENIEKCVTYFNTFY--PVLFPDTKFSHVGHLLMDYVKILS  538 (640)
Q Consensus       487 ~~sasKA~~k~---I---EaeqA~~hl~~l~~FL--PdsF~~~GGD~DsVl~lLlf~RLa  538 (640)
                      +++.+++..+.   |   .-.-|..|+.|++..-  |.+|.    +.|+|.+-....++.
T Consensus       520 eiAvt~~Lgk~~daIiVdte~ta~~CI~ylKeqr~~~~TFl----Pld~i~v~~~~e~lr  575 (1141)
T KOG0018|consen  520 EIAVTVVLGKNMDAIIVDTEATARDCIQYLKEQRLEPMTFL----PLDSIRVKPVNEKLR  575 (1141)
T ss_pred             HHHHHHHHhcccceEEeccHHHHHHHHHHHHHhccCCcccc----chhhhhcCccccccc
Confidence            36777777763   3   3457899999999887  77998    578876665555544

>PRK11281 hypothetical protein; Provisional

Probab=87.70  E-value=88  Score=39.44  Aligned_cols=81  Identities=23%  Similarity=0.334  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHH
Q psy15551        103 AKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNM  182 (640)
Q Consensus       103 ~~e~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~  182 (640)
                      .+.-++++..++.... +.+-..++++.++..+..+-.++.+..-+++-++.+.+..     ...........+||++-.
T Consensus        58 ~k~~~~~l~~tL~~L~-qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~-----~~~~~~~~Sl~qLEq~L~  131 (1113)
T PRK11281         58 DKLVQQDLEQTLALLD-KIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEE-----TRETLSTLSLRQLESRLA  131 (1113)
T ss_pred             hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccccc-----ccccccccCHHHHHHHHH
Confidence            3334555666655432 1233456777888888888888888888888777532221     111123333366777766


Q ss_pred             HHHHHHH
Q psy15551        183 RLRETLV  189 (640)
Q Consensus       183 rLreaLv  189 (640)
                      .+...|-
T Consensus       132 q~~~~Lq  138 (1113)
T PRK11281        132 QTLDQLQ  138 (1113)
T ss_pred             HHHHHHH
Confidence            5555444

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.58  E-value=43  Score=35.75  Aligned_cols=58  Identities=14%  Similarity=0.260  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy15551        359 VTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQE  419 (640)
Q Consensus       359 L~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEE  419 (640)
                      +..++.+|.+|..||+...+-   +.++.+++..++.+|..|+..|.+++ .+.+-++-|..
T Consensus        47 ~~~~q~ei~~L~~qi~~~~~k---~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~  105 (265)
T COG3883          47 KKNIQNEIESLDNQIEEIQSK---IDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK  105 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444443322   44445555555555555555555555 44444444443

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=87.48  E-value=29  Score=33.69  Aligned_cols=26  Identities=27%  Similarity=0.470  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        383 VQQLSVQKLELEDLVSKQAEEIVDLE  408 (640)
Q Consensus       383 VEELTEKNleLEEKIeELEetIeDLE  408 (640)
                      +..++..+..|...+..++..|.+|+
T Consensus        75 L~~l~sEk~~L~k~lq~~q~kv~eLE  100 (140)
T PF10473_consen   75 LDTLRSEKENLDKELQKKQEKVSELE  100 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0243|consensus

Probab=87.32  E-value=65  Score=40.19  Aligned_cols=17  Identities=29%  Similarity=0.438  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy15551        331 MSKLQKDIEEKKQENAE  347 (640)
Q Consensus       331 ~~~~~~~~e~~~~~~~~  347 (640)
                      ++.+-.+|+.+++.+..
T Consensus       406 lKd~~~EIerLK~dl~A  422 (1041)
T KOG0243|consen  406 LKDLYEEIERLKRDLAA  422 (1041)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444555555554443

>KOG2129|consensus

Probab=87.30  E-value=59  Score=37.03  Aligned_cols=40  Identities=28%  Similarity=0.321  Sum_probs=25.8

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHHHHH
Q psy15551          2 KAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKA   41 (640)
Q Consensus         2 ~~e~~~l~~kl~~~~~k~~ek~~~~~~~~~ql~q~~~~k~   41 (640)
                      +.++++++.|-.+|...-+-.+.--..+..+-+|-+||-.
T Consensus        63 k~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfis  102 (552)
T KOG2129|consen   63 KGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFIS  102 (552)
T ss_pred             hhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHH
Confidence            4566666666666655555544444566667788888876

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=87.17  E-value=23  Score=42.49  Aligned_cols=57  Identities=35%  Similarity=0.516  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHH------HHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHH-HHHHHH
Q psy15551        126 ERAETLQVELDLAKEKIE------ELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNM-RLRETL  188 (640)
Q Consensus       126 e~~e~l~~el~~~k~k~e------el~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~-rLreaL  188 (640)
                      ++.|.|+.++.   .+|+      +|.--+|.||.|+.+   ++.+++..+.--|..|+||.. +|-+|+
T Consensus       649 ~KIe~L~~eIk---kkIe~av~ss~LK~k~E~Lk~Evak---a~~~pd~~~k~kieal~~qik~~~~~a~  712 (762)
T PLN03229        649 EKIESLNEEIN---KKIERVIRSSDLKSKIELLKLEVAK---ASKTPDVTEKEKIEALEQQIKQKIAEAL  712 (762)
T ss_pred             HHHHHHHHHHH---HHHHHHhcchhHHHHHHHHHHHHHh---cCCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence            46666666542   2222      233444555555544   445555566788888999864 344444

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=87.02  E-value=65  Score=37.24  Aligned_cols=87  Identities=21%  Similarity=0.253  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        333 KLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL-----GAEEMVQQLSVQKLELEDLVSKQAEEIVDL  407 (640)
Q Consensus       333 ~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~-----gAEEMVEELTEKNleLEEKIeELEetIeDL  407 (640)
                      +|++++..++.-.+||....+++.-+|+.+-+.|..++|--..-+     ..+.|=.+|.+-|+.....+-.++..|.-.
T Consensus       484 ~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~  563 (622)
T COG5185         484 TLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQST  563 (622)
T ss_pred             eHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHH
Confidence            478889999999999999999999999999999998887543222     222333444444444444454444444444


Q ss_pred             H-HHHHHHHHHHH
Q psy15551        408 E-ALQVVSDQLQE  419 (640)
Q Consensus       408 E-aLkELnDELEE  419 (640)
                      + .+.++.-.+++
T Consensus       564 ~i~ld~~~~~~n~  576 (622)
T COG5185         564 EIKLDELKVDLNR  576 (622)
T ss_pred             HhhHHHHHHHHHH
Confidence            4 44444433333

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=86.99  E-value=45  Score=37.01  Aligned_cols=25  Identities=28%  Similarity=0.187  Sum_probs=15.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhh
Q psy15551        169 VSHYQIKQLEQQNMRLRETLVRLRD  193 (640)
Q Consensus       169 ~~~~~~~qle~qN~rLreaLvrlRd  193 (640)
                      ....+..+++.+...++..+.||+=
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~rL~a  118 (457)
T TIGR01000        94 NEENQKQLLEQQLDNLKDQKKSLDT  118 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666677777777766666643

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=86.85  E-value=40  Score=34.59  Aligned_cols=35  Identities=17%  Similarity=0.153  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy15551        441 EVIREKEAALESLADRELTI-VKFRELVIREKEAAL  475 (640)
Q Consensus       441 EL~rRIeq~eEqLEDlE~TI-sKFRELV~~LQedLe  475 (640)
                      +-..|++.+...+.+...+. .+||..+.-++.+..
T Consensus       128 eR~~Rl~~L~~~l~~~dv~~~ek~r~vlea~~~E~~  163 (251)
T PF11932_consen  128 ERQERLARLRAMLDDADVSLAEKFRRVLEAYQIEME  163 (251)
T ss_pred             HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHH
Confidence            55666777777777654433 478888887777765

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=86.58  E-value=51  Score=35.55  Aligned_cols=72  Identities=22%  Similarity=0.350  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        333 KLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDL  407 (640)
Q Consensus       333 ~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDL  407 (640)
                      ..+..+.+....++.|.+.++....+...++..+......++.|   ..++.-|+..+..=.+.+..++....-+
T Consensus       239 ~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA---~~Li~~L~~E~~RW~~~~~~l~~~~~~l  310 (344)
T PF12777_consen  239 EKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERA---EKLISGLSGEKERWSEQIEELEEQLKNL  310 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCHHHHHCCHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH---HHHHhhhcchhhhHHHHHHHHHHHhccc
Confidence            33444444444444444444444444444444444444444443   3345555555555555555555544443

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=86.56  E-value=29  Score=32.63  Aligned_cols=24  Identities=25%  Similarity=0.571  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        328 KHEMSKLQKDIEEKKQENAELIKS  351 (640)
Q Consensus       328 k~~~~~~~~~~e~~~~~~~~l~~~  351 (640)
                      .+.+..|+..||..+....+|++.
T Consensus        15 ~n~La~Le~slE~~K~S~~eL~kq   38 (107)
T PF09304_consen   15 QNRLASLERSLEDEKTSQGELAKQ   38 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHh
Confidence            334455555555555444444433

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=86.42  E-value=86  Score=38.03  Aligned_cols=17  Identities=18%  Similarity=0.266  Sum_probs=10.0

Q ss_pred             hhhHHHHHHHHHHHhhh
Q psy15551        582 TENIEKCVTYFNTFYPV  598 (640)
Q Consensus       582 ~E~FEKI~~YFn~IFsv  598 (640)
                      .+.++++...+..+=+.
T Consensus       856 ~e~l~~l~~~l~~i~~~  872 (908)
T COG0419         856 EERLEKLAEILEELLSD  872 (908)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            34566666666665544

>PLN02939 transferase, transferring glycosyl groups

Probab=86.40  E-value=97  Score=38.59  Aligned_cols=51  Identities=20%  Similarity=0.169  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        355 LKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQV  412 (640)
Q Consensus       355 l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLEaLkE  412 (640)
                      +-.+++.++.-..-..-|+|.|.-       .-++|.+|..+|..|++.+++-...+-
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (977)
T PLN02939        298 WWEKVENLQDLLDRATNQVEKAAL-------VLDQNQDLRDKVDKLEASLKEANVSKF  348 (977)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HhccchHHHHHHHHHHHHHHHhhHhhh
Confidence            555666666666666677766643       367899999999999988887764433

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=86.26  E-value=39  Score=33.87  Aligned_cols=69  Identities=20%  Similarity=0.265  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        379 AEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKE  447 (640)
Q Consensus       379 AEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIe  447 (640)
                      ++.....+..++..|+.++.+|+..+.++. ....+....++.....++...+|++++......+..+++
T Consensus       118 ~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~  187 (189)
T PF10211_consen  118 AEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE  187 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344455666777777777777777777776 555555555555556667788888888877776665554

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=86.06  E-value=40  Score=40.29  Aligned_cols=102  Identities=19%  Similarity=0.204  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---HHHHHH
Q psy15551        350 KSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQE---DAKEIE  425 (640)
Q Consensus       350 ~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEE---nhvE~E  425 (640)
                      ...+.++.++..+....+   .|++..--+.+.++.|++.-..|.+++++..+.-+.|. .++.+-..+..   .-...|
T Consensus       558 ~ar~ei~~rv~~Lk~~~e---~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AE  634 (717)
T PF10168_consen  558 LAREEIQRRVKLLKQQKE---QQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAE  634 (717)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHH
Confidence            344455555555544433   45555556666777888888888888888888877777 56555554433   123556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        426 IELKEEVEMARSATREVIREKEAALESLA  454 (640)
Q Consensus       426 KeLREELD~kdsqIrEL~rRIeq~eEqLE  454 (640)
                      +++.+|++....+++.+..++++....+.
T Consensus       635 r~~~~EL~~~~~~l~~l~~si~~lk~k~~  663 (717)
T PF10168_consen  635 REFKKELERMKDQLQDLKASIEQLKKKLD  663 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888877777766666666554444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=86.01  E-value=8.2  Score=38.22  Aligned_cols=12  Identities=33%  Similarity=0.224  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHH
Q psy15551        325 AHEKHEMSKLQK  336 (640)
Q Consensus       325 ~~~k~~~~~~~~  336 (640)
                      +..+++...++.
T Consensus        34 ~~l~~~~~~l~~   45 (194)
T PF08614_consen   34 SLLKAENEQLQP   45 (194)
T ss_dssp             ------------
T ss_pred             cccccccccccc
Confidence            444444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0964|consensus

Probab=85.95  E-value=1e+02  Score=38.47  Aligned_cols=117  Identities=21%  Similarity=0.346  Sum_probs=65.7

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHHHHHHHHHHHhhhhhhh---hHHHH--hhHHHHHHHHHhHHHHHH
Q psy15551          3 AEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFR---YREKT--RDLDEMKIQLDQSAEFKA   77 (640)
Q Consensus         3 ~e~~~l~~kl~~~~~k~~ek~~~~~~~~~ql~q~~~~k~k~~e~~~~~~~~~---d~~k~--~~l~~~~~~~~~~~~~k~   77 (640)
                      .+|.+-+.+|.+.+-||..=..+-.-.+.+|-++..=+.-++--|+..|-|-   +|+|.  .++++++.-+....    
T Consensus       335 ~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~k----  410 (1200)
T KOG0964|consen  335 DKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTK----  410 (1200)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhh----
Confidence            4566677777777788877666667777788777777777777777777773   33332  23333333333222    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHhhhhHHHHHH
Q psy15551         78 KIMESQAGLKRELEKLKQEKQEAVEAKEDTAD-L-VETLEMMTLDKEMAEE  126 (640)
Q Consensus        78 ~~~~~~~~~~~el~~~k~~~~e~~~~~e~~~d-~-~~~lem~tldkemaee  126 (640)
                         +.-+.+|.++..++.++++.-+....+.. + .-.-.|-++|.+.++.
T Consensus       411 ---e~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~  458 (1200)
T KOG0964|consen  411 ---EQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTEL  458 (1200)
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHH
Confidence               33344566666666666554443332111 1 1122355566555543

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=85.72  E-value=50  Score=36.43  Aligned_cols=56  Identities=14%  Similarity=0.322  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhh
Q psy15551        126 ERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRD  193 (640)
Q Consensus       126 e~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlRd  193 (640)
                      ++...+..-+......+.+++-+++..|.+|++.+.. ++++  +|.         .++|.||.+||.
T Consensus       287 ~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~-mtD~--sPl---------v~IKqAl~kLk~  342 (359)
T PF10498_consen  287 EKYKQASEGVSERTRELAEISEELEQVKQEMEERGSS-MTDG--SPL---------VKIKQALTKLKQ  342 (359)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCC--CHH---------HHHHHHHHHHHH
Confidence            4455555666666667778888889999999886555 3332  332         356777777774

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events []

Probab=85.67  E-value=62  Score=35.72  Aligned_cols=109  Identities=22%  Similarity=0.404  Sum_probs=63.3

Q ss_pred             hhhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH----HHhhcH
Q psy15551        308 EIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQE----KLKQRVTELEADCADLHEQV----DAALGA  379 (640)
Q Consensus       308 ~~~~~~~~~~~~l~d~~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~----~l~~kL~~~e~~~~~l~~q~----d~a~gA  379 (640)
                      ++|.+.+-+. .|-++-+..+..+..+..+|.       +....+.    .-...+..+...+.+|-.++    .-|-..
T Consensus        12 ~lfp~e~SL~-~ld~~i~~l~~~i~~ld~eI~-------~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~s   83 (383)
T PF04100_consen   12 ELFPDEQSLS-NLDELIAKLRKEIRELDEEIK-------ELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEES   83 (383)
T ss_pred             HhCCChHHHH-hHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555554442 233333444444444444443       3333332    22233455555555555555    347778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        380 EEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEI  424 (640)
Q Consensus       380 EEMVEELTEKNleLEEKIeELEetIeDLEaLkELnDELEEnhvE~  424 (640)
                      |.||.++|.-+..|---=.-|..+|.-|..|+-+-.-+.....-.
T Consensus        84 E~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~  128 (383)
T PF04100_consen   84 EQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELA  128 (383)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888887766666665544433

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=85.62  E-value=37  Score=33.03  Aligned_cols=160  Identities=21%  Similarity=0.232  Sum_probs=101.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHHHHHH
Q psy15551          3 AEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMES   82 (640)
Q Consensus         3 ~e~~~l~~kl~~~~~k~~ek~~~~~~~~~ql~q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~~~~~   82 (640)
                      .+|.+++-++-+++.+...       +..||.+..+.-              +--.+-|++.++++..+   +..+|.+.
T Consensus         6 ~~i~~~Rl~~~~lk~~l~k-------~~~ql~~ke~lg--------------e~L~~iDFeqLkien~~---l~~kIeER   61 (177)
T PF13870_consen    6 NEISKLRLKNITLKHQLAK-------LEEQLRQKEELG--------------EGLHLIDFEQLKIENQQ---LNEKIEER   61 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhc--------------CcccHHHHHHHHHHHHH---HHHHHHHH
Confidence            4667777777777766554       444444444332              34578899999999988   78888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCC
Q psy15551         83 QAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDG  162 (640)
Q Consensus        83 ~~~~~~el~~~k~~~~e~~~~~e~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~  162 (640)
                      -.+|.    ++|......+   .-++-..+.+-+++-+...........+..+..+++.+..+..+..-++..+......
T Consensus        62 n~eL~----~Lk~~~~~~v---~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~  134 (177)
T PF13870_consen   62 NKELL----KLKKKIGKTV---QILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQ  134 (177)
T ss_pred             HHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            65544    3333322222   2344445566666666666777777777777888888888888888877777666433


Q ss_pred             CCCCCCcchH-HHHHHHHHHHHHHHHHHHhhh
Q psy15551        163 AGDGTEVSHY-QIKQLEQQNMRLRETLVRLRD  193 (640)
Q Consensus       163 ~~~~~~~~~~-~~~qle~qN~rLreaLvrlRd  193 (640)
                      +|.-+-|+-. .|.........|+..+..|+.
T Consensus       135 ~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~r  166 (177)
T PF13870_consen  135 GGLLGVPALLRDYDKTKEEVEELRKEIKELER  166 (177)
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3443333332 466666666777777776664

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=85.34  E-value=45  Score=33.77  Aligned_cols=81  Identities=16%  Similarity=0.270  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        326 HEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIV  405 (640)
Q Consensus       326 ~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIe  405 (640)
                      ..-.++.-|...+...+...-.+....-+....+..+...+..|+.-+++--.++  -++|+.+...++.++.+-...|.
T Consensus        65 ~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~e--ReeL~~kL~~~~~~l~~~~~ki~  142 (194)
T PF15619_consen   65 RHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAE--REELQRKLSQLEQKLQEKEKKIQ  142 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555566666555555555555555555566666666666666655433333  46666666666666666666666


Q ss_pred             HHH
Q psy15551        406 DLE  408 (640)
Q Consensus       406 DLE  408 (640)
                      .|+
T Consensus       143 ~Le  145 (194)
T PF15619_consen  143 ELE  145 (194)
T ss_pred             HHH
Confidence            666

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=85.28  E-value=58  Score=35.04  Aligned_cols=78  Identities=22%  Similarity=0.336  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHHHHHHHHHHHhhhhhhhhHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy15551          7 DLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGL   86 (640)
Q Consensus         7 ~l~~kl~~~~~k~~ek~~~~~~~~~ql~q~~~~k~k~~e~~~~~~~~~d~~k~~~l~~~~~~~~~~~~~k~~~~~~~~~~   86 (640)
                      +..+|++++-.+|.+=+.+...+..++..+.          ..     .-.-.++.+.+..++......|.|+..+=.+|
T Consensus        19 ~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~----------Kk-----~~~l~kek~~l~~E~~k~~~~k~KLE~LCREL   83 (309)
T PF09728_consen   19 SPEEKLEALCKKYAELLEEMKRLQKQLKKLQ----------KK-----QEQLQKEKDQLQSELSKAILAKSKLESLCREL   83 (309)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4467999999999995555555444443332          11     22356778888899999999999998888888


Q ss_pred             HHHHHHHHHHHHH
Q psy15551         87 KRELEKLKQEKQE   99 (640)
Q Consensus        87 ~~el~~~k~~~~e   99 (640)
                      |+.-..++-+...
T Consensus        84 Qk~Nk~lkeE~~~   96 (309)
T PF09728_consen   84 QKQNKKLKEESKR   96 (309)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888777655443

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>KOG0979|consensus

Probab=84.96  E-value=1.1e+02  Score=38.09  Aligned_cols=103  Identities=16%  Similarity=0.175  Sum_probs=70.7

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        374 DAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALES  452 (640)
Q Consensus       374 d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEq  452 (640)
                      ++--++-..+..|.+.....+.++++|+..+.++. .+..+..++.+..... ...-+.+...+..+.+.....+.+...
T Consensus       255 ~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~-~~~~ek~~~~~~~v~~~~~~le~lk~~  333 (1072)
T KOG0979|consen  255 QAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKV-QEKFEKLKEIEDEVEEKKNKLESLKKA  333 (1072)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445556677777777777788888888777777 7777777777654432 334445555555666666666666667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551        453 LADRELTIVKFRELVIREKEAALES  477 (640)
Q Consensus       453 LEDlE~TIsKFRELV~~LQedLeEL  477 (640)
                      -.+.+.+|.+.++-+..+|..++..
T Consensus       334 ~~~rq~~i~~~~k~i~~~q~el~~~  358 (1072)
T KOG0979|consen  334 AEKRQKRIEKAKKMILDAQAELQET  358 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            7777777888888888888887754

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=84.58  E-value=26  Score=37.63  Aligned_cols=28  Identities=18%  Similarity=0.031  Sum_probs=20.6

Q ss_pred             CccccchhhHHhhhhHHHhcchHHHHHHH
Q psy15551        610 GSLLMDYVKILSTACDCLQTDSKIIQALI  638 (640)
Q Consensus       610 ~L~LtD~~dvL~SGIEIiA~~~~~~~~~~  638 (640)
                      .+....+. --+.|+-.+.||.+++-+..
T Consensus       281 ~~~~~~~~-~WT~AlK~lLtnlKw~l~~~  308 (314)
T PF04111_consen  281 KLQFNSEE-EWTKALKYLLTNLKWLLAWV  308 (314)
T ss_dssp             -STTS-HH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             eecCCChh-HHHHHHHHHHHHHHHHHHHH
Confidence            44445666 48999999999999987764

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK09343 prefoldin subunit beta; Provisional

Probab=84.56  E-value=27  Score=32.59  Aligned_cols=92  Identities=20%  Similarity=0.252  Sum_probs=52.9

Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q psy15551        369 LHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQE--------DAKEIEIELKEEVEMARSATR  440 (640)
Q Consensus       369 l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLEaLkELnDELEE--------nhvE~EKeLREELD~kdsqIr  440 (640)
                      +..++...-.+...+..+..+...++..+.+.+.++++|+.|.+=..-+.-        ...+....+.+.+++.+..|.
T Consensus         9 ~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik   88 (121)
T PRK09343          9 VQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSR   88 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            334444444555556667777777788888888888888766533332221        122333566666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy15551        441 EVIREKEAALESLADRELTI  460 (640)
Q Consensus       441 EL~rRIeq~eEqLEDlE~TI  460 (640)
                      .+..+.......+.+.+..|
T Consensus        89 ~lekq~~~l~~~l~e~q~~l  108 (121)
T PRK09343         89 TLEKQEKKLREKLKELQAKI  108 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555554443

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.55  E-value=20  Score=36.62  Aligned_cols=50  Identities=20%  Similarity=0.333  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        353 EKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE  408 (640)
Q Consensus       353 ~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE  408 (640)
                      -.+..++..++.++++|+.+++.+-      .+...+..++++++...+..+.+|+
T Consensus        89 p~~~~rlp~le~el~~l~~~l~~~~------~~~~~~~~~l~~~~~~~~~~~~~L~  138 (206)
T PRK10884         89 PSLRTRVPDLENQVKTLTDKLNNID------NTWNQRTAEMQQKVAQSDSVINGLK  138 (206)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3477888888888888887777643      3344555555555555555554433

>TIGR00634 recN DNA repair protein RecN

Probab=84.39  E-value=83  Score=36.08  Aligned_cols=65  Identities=15%  Similarity=0.202  Sum_probs=33.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhcHHHHHHHHHHH
Q psy15551        325 AHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEA------DCADLHEQVDAALGAEEMVQQLSVQ  389 (640)
Q Consensus       325 ~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~------~~~~l~~q~d~a~gAEEMVEELTEK  389 (640)
                      ....++.+.+.+++.++.....++....+.++.++.++++      ..++|.++++...-++...+.+..-
T Consensus       164 ~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~  234 (563)
T TIGR00634       164 RELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNA  234 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            3334555555555555555555555555555555555543      2233555555444444444444433

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>KOG4657|consensus

Probab=84.30  E-value=27  Score=36.64  Aligned_cols=83  Identities=17%  Similarity=0.229  Sum_probs=36.7

Q ss_pred             hccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy15551        310 FNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQ  389 (640)
Q Consensus       310 ~~~~~~~~~~l~d~~~~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEK  389 (640)
                      .|+++.|..+|    +..+.+...+.+++.+...++..-.+-.++=.......+..|-++++          .++-|+-.
T Consensus        43 ~nS~~efar~l----S~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~----------elEvl~~n  108 (246)
T KOG4657|consen   43 MNSLVEFARAL----SQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQS----------ELEVLRRN  108 (246)
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
Confidence            44555555544    44445555555555554444433322222222223333333333333          23334445


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy15551        390 KLELEDLVSKQAEEIVD  406 (640)
Q Consensus       390 NleLEEKIeELEetIeD  406 (640)
                      ++.++++...+++.|..
T Consensus       109 ~Q~lkeE~dd~keiIs~  125 (246)
T KOG4657|consen  109 LQLLKEEKDDSKEIISQ  125 (246)
T ss_pred             HHHHHHHhhhHHHHHHH
Confidence            55555555555555544

>KOG4302|consensus

Probab=84.26  E-value=29  Score=41.21  Aligned_cols=136  Identities=15%  Similarity=0.146  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q psy15551        340 EKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEE----MVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVS  414 (640)
Q Consensus       340 ~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEE----MVEELTEKNleLEEKIeELEetIeDLE-aLkELn  414 (640)
                      -++.-.++....+.+|.+.+..+++.|++|-..+-...+.-.    --..|.++...+...++.|....++-- ++.++.
T Consensus        51 ~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~  130 (660)
T KOG4302|consen   51 IYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELY  130 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556777788888999999999999998877644433322    222455555555556666655555444 555666


Q ss_pred             HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        415 DQLQEDAKEIE-------IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAAL  475 (640)
Q Consensus       415 DELEEnhvE~E-------KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLe  475 (640)
                      .+++..-.+.-       .-+-.+.|--...+.++..++..++++..+.-..+..|+..|..+.+.|.
T Consensus       131 ~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg  198 (660)
T KOG4302|consen  131 HQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLG  198 (660)
T ss_pred             HHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            65555544443       11222223333555666666666666666666777777777777776664

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=84.21  E-value=81  Score=35.78  Aligned_cols=45  Identities=24%  Similarity=0.430  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        329 HEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQV  373 (640)
Q Consensus       329 ~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~  373 (640)
                      .++...+++|+.+.+.+..-.+...+|...+..++.++..+..|+
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql   82 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQL   82 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555555555555555555554

>KOG1029|consensus

Probab=84.00  E-value=1.1e+02  Score=37.34  Aligned_cols=115  Identities=23%  Similarity=0.279  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-
Q psy15551        337 DIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLEL-------EDLVSKQAEEIVDLE-  408 (640)
Q Consensus       337 ~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleL-------EEKIeELEetIeDLE-  408 (640)
                      ++..-+++++++.+..+-.-...+++.+.|.++++.+--. .  ..-..|..+....       ..+..+|+.....-+ 
T Consensus       466 ~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l-~--~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~  542 (1118)
T KOG1029|consen  466 DITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKL-A--PEKQELNHQLKQKQSAHKETTQRKSELEAARRKKEL  542 (1118)
T ss_pred             ccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-h--hHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHH
Confidence            3455677777888877777777777776666665544211 1  1111222222222       123556666666666 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        409 ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLAD  455 (640)
Q Consensus       409 aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLED  455 (640)
                      ..+.+.|++.+...|+++.+ ++|+..+.++.++..-...+.-..++
T Consensus       543 irq~ikdqldelskE~esk~-~eidi~n~qlkelk~~~~~q~lake~  588 (1118)
T KOG1029|consen  543 IRQAIKDQLDELSKETESKL-NEIDIFNNQLKELKEDVNSQQLAKEE  588 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            56677888888888877665 46788888888877766666655554

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=83.88  E-value=52  Score=33.35  Aligned_cols=42  Identities=12%  Similarity=0.246  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy15551        380 EEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDA  421 (640)
Q Consensus       380 EEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnh  421 (640)
                      ...++.+..++..+...+..++..|.... .+.++...+..-.
T Consensus        62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~  104 (302)
T PF10186_consen   62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRR  104 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555555 4444444444433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=83.81  E-value=58  Score=33.79  Aligned_cols=82  Identities=24%  Similarity=0.420  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        327 EKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAAL--GAEEMVQQLSVQKLELEDLVSKQAEEI  404 (640)
Q Consensus       327 ~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~--gAEEMVEELTEKNleLEEKIeELEetI  404 (640)
                      ..+.|...+.++-+.++..+.++..+-.+..++..+...++++..+.-.|+  |-|+.-.+.-.+...|++.+..++..+
T Consensus        29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~  108 (225)
T COG1842          29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAEL  108 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678888999999999999999999999999999999999999998886  556777777777777777777777776


Q ss_pred             HHHH
Q psy15551        405 VDLE  408 (640)
Q Consensus       405 eDLE  408 (640)
                      ..+.
T Consensus       109 ~~~~  112 (225)
T COG1842         109 QQAE  112 (225)
T ss_pred             HHHH
Confidence            6655

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=83.75  E-value=34  Score=32.56  Aligned_cols=78  Identities=22%  Similarity=0.239  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        384 QQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQ--------EDAKEIEIELKEEVEMARSATREVIREKEAALESLAD  455 (640)
Q Consensus       384 EELTEKNleLEEKIeELEetIeDLEaLkELnDELE--------EnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLED  455 (640)
                      ..+-.+...++-.+.+.+..+++++.+.+-..-+-        ..+-+...+|.+.++.++..|..+.++.....++++.
T Consensus        23 ~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~e  102 (119)
T COG1382          23 QKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEE  102 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555554433111100        0111222555666666666666666655555555555


Q ss_pred             HHHHHH
Q psy15551        456 RELTIV  461 (640)
Q Consensus       456 lE~TIs  461 (640)
                      +...|.
T Consensus       103 Lq~~i~  108 (119)
T COG1382         103 LQSEIQ  108 (119)
T ss_pred             HHHHHH
Confidence            444443

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=83.47  E-value=1.2e+02  Score=37.02  Aligned_cols=113  Identities=21%  Similarity=0.223  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHhhcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH------HHHHHH
Q psy15551        363 EADCADLHEQVDAALGAE----EMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE------IELKEE  431 (640)
Q Consensus       363 e~~~~~l~~q~d~a~gAE----EMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E------KeLREE  431 (640)
                      .+...+++..++.--+.+    ...+.-+..+..+.++++.++..-.+++ .|....++++..+.++.      ..|+.+
T Consensus       560 ~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~e  639 (769)
T PF05911_consen  560 SSMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSE  639 (769)
T ss_pred             HHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555554433332    1234566677788888888888888888 78888888888777765      556666


Q ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        432 VEMARSATREVIREKEAA-------LESLADRELTIVKFRELVIREKEAAL  475 (640)
Q Consensus       432 LD~kdsqIrEL~rRIeq~-------eEqLEDlE~TIsKFRELV~~LQedLe  475 (640)
                      +......-.....++...       ..++.+.+..+......|..|+.+|+
T Consensus       640 L~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele  690 (769)
T PF05911_consen  640 LESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELE  690 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            665554444444444444       33444445566666677777777765

The function of this family is unknown.

>KOG4809|consensus

Probab=82.69  E-value=1e+02  Score=36.30  Aligned_cols=42  Identities=29%  Similarity=0.400  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        332 SKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQV  373 (640)
Q Consensus       332 ~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~  373 (640)
                      ...+.+|+..+.++..|......|...+++.++..-||++..
T Consensus       327 rE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkeha  368 (654)
T KOG4809|consen  327 RERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHA  368 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677788888888887777778888888888888877753

>KOG0946|consensus

Probab=82.68  E-value=1.3e+02  Score=36.98  Aligned_cols=25  Identities=28%  Similarity=0.375  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhh
Q psy15551        132 QVELDLAKEKIEELTLDIELMKADI  156 (640)
Q Consensus       132 ~~el~~~k~k~eel~le~e~lk~e~  156 (640)
                      -.|+..+..+...++-+.+.+.++.
T Consensus       736 ~eel~a~~~e~k~l~~~q~~l~~~L  760 (970)
T KOG0946|consen  736 NEELNAALSENKKLENDQELLTKEL  760 (970)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444443

>KOG1029|consensus

Probab=82.40  E-value=1.3e+02  Score=36.87  Aligned_cols=27  Identities=22%  Similarity=0.320  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy15551        125 EERAETLQVELDLAKEKIEELTLDIEL  151 (640)
Q Consensus       125 ee~~e~l~~el~~~k~k~eel~le~e~  151 (640)
                      .++.-+|+.||+.+..|+..|.-.|--
T Consensus       436 nak~~ql~~eletLn~k~qqls~kl~D  462 (1118)
T KOG1029|consen  436 NAKKKQLQQELETLNFKLQQLSGKLQD  462 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            345667777777777777776644433

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=82.33  E-value=98  Score=37.69  Aligned_cols=107  Identities=23%  Similarity=0.268  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH-----
Q psy15551        366 CADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE---IELKEEVEMAR-----  436 (640)
Q Consensus       366 ~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E---KeLREELD~kd-----  436 (640)
                      ---|+-||-..++.   .+.|..+|.+|-.-|+.++.+-..+- .+.+.+.+|-++..++.   ..++-|++..-     
T Consensus       436 N~~Lq~ql~es~k~---~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~  512 (861)
T PF15254_consen  436 NMSLQNQLQESLKS---QELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKS  512 (861)
T ss_pred             HHHHHHHHHHHHHh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455565555554   33444555555555555555555555 56666666666666555   33444444433     


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        437 --SATREVIREKEAALESLADRELTIVKFRELVIREKEAAL  475 (640)
Q Consensus       437 --sqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLe  475 (640)
                        -.+.+...+...+.-.+-..+..|.++|++.+.||.-..
T Consensus       513 ~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma  553 (861)
T PF15254_consen  513 LQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMA  553 (861)
T ss_pred             HhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              344455555556666777788889999999999988654

>PF13166 AAA_13: AAA domain

Probab=82.29  E-value=1e+02  Score=35.66  Aligned_cols=34  Identities=24%  Similarity=0.401  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy15551        383 VQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQ  416 (640)
Q Consensus       383 VEELTEKNleLEEKIeELEetIeDLE-aLkELnDE  416 (640)
                      +..++.....+...|.+....+..+. ....+.+.
T Consensus       365 ~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~  399 (712)
T PF13166_consen  365 IDELNSIIDELNELIEEHNEKIDNLKKEQNELKDK  399 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555544 33333333

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=81.89  E-value=99  Score=35.10  Aligned_cols=141  Identities=18%  Similarity=0.271  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy15551        330 EMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMV----QQLSVQKLELEDLVSKQAEEIV  405 (640)
Q Consensus       330 ~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMV----EELTEKNleLEEKIeELEetIe  405 (640)
                      +...+.+.+-+-.++++.+.+....|..+|..+-++-..|.+|.+..+.....+    ++|+.+..+|.-+-+..+-.-.
T Consensus       124 ~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~  203 (499)
T COG4372         124 ELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQ  203 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555556666777777777788888888777777777777654443333    3454444444433322221111


Q ss_pred             HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        406 DLE----ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREK  471 (640)
Q Consensus       406 DLE----aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQ  471 (640)
                      .|-    +......+|.- ...--.....+|..++.+|.....+|.+-.+.|...+..+........-++
T Consensus       204 ~la~r~~a~q~r~~ela~-r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~le  272 (499)
T COG4372         204 NLATRANAAQARTEELAR-RAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLE  272 (499)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111    22222222221 111114556666666666666666666655555555544444433333333

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=81.62  E-value=25  Score=35.26  Aligned_cols=75  Identities=27%  Similarity=0.344  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHH
Q psy15551        106 DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLR  185 (640)
Q Consensus       106 ~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLr  185 (640)
                      .++++...++.+.-.++--++|...+ .+++.++.+       +..|+++++.+...       .|..+.++.+....++
T Consensus        84 ~i~~l~~~i~~~~~~r~~~~eR~~~l-~~l~~l~~~-------~~~l~~el~~~~~~-------Dp~~i~~~~~~~~~~~  148 (188)
T PF03962_consen   84 KIEELEEKIEEAKKGREESEEREELL-EELEELKKE-------LKELKKELEKYSEN-------DPEKIEKLKEEIKIAK  148 (188)
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHH-HHHHHHHHH-------HHHHHHHHHHHHhc-------CHHHHHHHHHHHHHHH
Confidence            44555566665555555556666533 344444444       44444555433322       5678899999999999


Q ss_pred             HHHHHhhhch
Q psy15551        186 ETLVRLRDLS  195 (640)
Q Consensus       186 eaLvrlRd~s  195 (640)
                      +++.|.-|=-
T Consensus       149 ~~anrwTDNI  158 (188)
T PF03962_consen  149 EAANRWTDNI  158 (188)
T ss_pred             HHHHHHHhhH
Confidence            9999887743

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>KOG0804|consensus

Probab=81.38  E-value=78  Score=36.31  Aligned_cols=43  Identities=19%  Similarity=0.061  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        412 VVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLA  454 (640)
Q Consensus       412 ELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eEqLE  454 (640)
                      |++.-|.+++.--...+.+..+.....+.....+|.++++++-
T Consensus       403 E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlr  445 (493)
T KOG0804|consen  403 EENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLR  445 (493)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444433334444433333333434444444444433

>KOG0995|consensus

Probab=81.27  E-value=1.2e+02  Score=35.69  Aligned_cols=112  Identities=22%  Similarity=0.362  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy15551         73 AEFKAKIMESQAGLKRELEKLKQEKQEAVEAKE---------------------DTADLVETLEMMTLDKEMAEERAETL  131 (640)
Q Consensus        73 ~~~k~~~~~~~~~~~~el~~~k~~~~e~~~~~e---------------------~~~d~~~~lem~tldkemaee~~e~l  131 (640)
                      .+|+.++.+....+-.+++.+++...++.+.-.                     |+.-....+.-|+=-+.--+-..+.+
T Consensus       220 ~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l  299 (581)
T KOG0995|consen  220 DELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEML  299 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            456666655555555555555554444432211                     22222233333333333344455666


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhh
Q psy15551        132 QVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLR  192 (640)
Q Consensus       132 ~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rLreaLvrlR  192 (640)
                      +.|++..-+.+|-|..+..-||..++..        .-|..++.+|-+.+..|...|-++-
T Consensus       300 ~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q--------~iS~~dve~mn~Er~~l~r~l~~i~  352 (581)
T KOG0995|consen  300 KSEIEEKEEEIEKLQKENDELKKQIELQ--------GISGEDVERMNLERNKLKRELNKIQ  352 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666677666662        2577888888888888888877653

>KOG0804|consensus

Probab=81.26  E-value=99  Score=35.53  Aligned_cols=46  Identities=13%  Similarity=0.148  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        392 ELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIRE  445 (640)
Q Consensus       392 eLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rR  445 (640)
                      .++.++.++...+++.. ++.+..        |..+.|++.++-....+.++.++
T Consensus       379 ~~e~k~~q~q~k~~k~~kel~~~~--------E~n~~l~knq~vw~~kl~~~~e~  425 (493)
T KOG0804|consen  379 IVERKLQQLQTKLKKCQKELKEER--------EENKKLIKNQDVWRGKLKELEER  425 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhHHHHHHHHHHHHHH
Confidence            34444555555555544 332222        44455555555555555544443

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=81.14  E-value=27  Score=30.35  Aligned_cols=84  Identities=24%  Similarity=0.326  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        335 QKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDA------------ALGAEEMVQQLSVQKLELEDLVSKQAE  402 (640)
Q Consensus       335 ~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~------------a~gAEEMVEELTEKNleLEEKIeELEe  402 (640)
                      +.....+..+...+......+...+.+++.....|..-=|.            -...++.++.|+++...++..|..++.
T Consensus         4 ~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~   83 (106)
T PF01920_consen    4 QNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEK   83 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555555555556565555555543222            124678888888888888888888888


Q ss_pred             HHHHHH-HHHHHHHHHH
Q psy15551        403 EIVDLE-ALQVVSDQLQ  418 (640)
Q Consensus       403 tIeDLE-aLkELnDELE  418 (640)
                      .+..++ .+.++...|.
T Consensus        84 ~~~~l~~~l~~~~~~l~  100 (106)
T PF01920_consen   84 QLKYLEKKLKELKKKLY  100 (106)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            888888 7777776664

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=80.51  E-value=50  Score=30.84  Aligned_cols=92  Identities=21%  Similarity=0.336  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------------------
Q psy15551        329 HEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAA--------------------------------  376 (640)
Q Consensus       329 ~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a--------------------------------  376 (640)
                      .+++.++..+..++++...|..+...+...+.+....++.|. .+...                                
T Consensus         6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~-~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~   84 (140)
T PRK03947          6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE-ELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGA   84 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCC
Confidence            345555555555555555555555555555555554444443 22210                                


Q ss_pred             -----hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy15551        377 -----LGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDA  421 (640)
Q Consensus       377 -----~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnh  421 (640)
                           ...++-++.|..+...++..+..++..+..+. .+..+...+++..
T Consensus        85 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~  135 (140)
T PRK03947         85 GYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ  135 (140)
T ss_pred             CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 13455666666666666666666666666666 5555555555443

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=80.48  E-value=15  Score=38.59  Aligned_cols=66  Identities=35%  Similarity=0.565  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        333 KLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE  408 (640)
Q Consensus       333 ~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE  408 (640)
                      .+..+.++.+....++++.++.|..+++++++.++.+++.+          +.|...|-.|++....+...+.+|.
T Consensus       132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erl----------k~le~E~s~LeE~~~~l~~ev~~L~  197 (290)
T COG4026         132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERL----------KRLEVENSRLEEMLKKLPGEVYDLK  197 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhchhHHHHHH
Confidence            33444555555566666666666666677776666665543          3344444444444444444444444

>KOG0946|consensus

Probab=80.45  E-value=1.5e+02  Score=36.38  Aligned_cols=72  Identities=19%  Similarity=0.208  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy15551        345 NAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMV----QQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQ  416 (640)
Q Consensus       345 ~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMV----EELTEKNleLEEKIeELEetIeDLE-aLkELnDE  416 (640)
                      .++..++...+..+++..+.+++.+-+..-++...-+-+    ..+...+-..+.++..|.+.+.... -++++.+.
T Consensus       801 l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk  877 (970)
T KOG0946|consen  801 LSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEK  877 (970)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhh
Confidence            333334334444444555555555444443332221111    1233344444444455555554444 33333333

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=80.04  E-value=1.3e+02  Score=35.42  Aligned_cols=37  Identities=14%  Similarity=0.182  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q psy15551        121 KEMAEERAETLQVELDLAKEKIEELTLDIELMKADIE  157 (640)
Q Consensus       121 kemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e  157 (640)
                      .+.+....+-+...+..++.++++.+.+++..|.+..
T Consensus       189 ~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~  225 (754)
T TIGR01005       189 SESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSD  225 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4455666777888888889999988888888887643

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	640
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	5e-05
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-04
1y1u_A	585	Signal transducer and activator of transcription;	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.9 bits (183), Expect = 4e-14
 Identities = 94/654 (14%), Positives = 197/654 (30%), Gaps = 155/654 (23%)

Query: 38  EFKAKIMESQAASSLFRYREK-TRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQE 96
           +F+    + Q    L  + +    + D   +Q     +    I+      K E++ +   
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-----DMPKSILS-----KEEIDHIIMS 57

Query: 97  KQEAVEAKEDTADLVETLEMMTLDKEMAEERAET-LQVELDLAKEKIEELTLDIELMKAD 155
           K         T  L  TL   +  +EM ++  E  L++        I+       +M   
Sbjct: 58  KDA----VSGTLRLFWTLL--SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111

Query: 156 IEKSCDGA-GDGTEVSHYQIKQLEQQNMRLRETLVRLRD---LSAHEIFNNNKFDSRL-- 209
             +  D    D    + Y + +L+    +LR+ L+ LR    +    +  + K  + +  
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYL-KLRQALLELRPAKNVLIDGVLGSGK--TWVAL 168

Query: 210 ---RDLSAHEIFNNN----KFDSRLRDLSAHEIFNN--NKFDSRLYDLSAH--EIFNNKN 258
                       +         +     +  E+      + D      S H   I    +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 259 KFDSRLRDLSAHEIFNNKNKFDSR--LRDLSAHEIFNNNKFD--SRL----RDLSAHEIF 310
              + LR L   + + N         L ++   + +  N F+   ++    R     +  
Sbjct: 229 SIQAELRRLLKSKPYEN-----CLLVLLNVQNAKAW--NAFNLSCKILLTTRFKQVTDFL 281

Query: 311 NNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLH 370
           +        L        H    L  D      E   L+     L  R  +L  +    +
Sbjct: 282 SAATTTHISL-------DHHSMTLTPD------EVKSLLLK--YLDCRPQDLPREVLTTN 326

Query: 371 EQVDAALGAE--------EMVQQLSVQKLE------LEDLVSKQAEEIVDL-EALQVVSD 415
            +  + +           +  + ++  KL       L  L   +  E   + + L V   
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL---EPAEYRKMFDRLSV--- 380

Query: 416 QLQEDAKEIEIELKEEV--EMARSATREVIREKEAALESLADR---ELTI----VKFREL 466
                A  I   L   +  ++ +S    V+   +    SL ++   E TI    +     
Sbjct: 381 -FPPSAH-IPTILLSLIWFDVIKSDVMVVV--NKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 467 VIREKEAALESLADRELTIVKFRELNSLD-EKVSTENIEKCVTYFNTFYPVLFPDTKFSH 525
           V  E E AL     R + +  +    + D + +    +++   YF            +SH
Sbjct: 437 VKLENEYALH----RSI-VDHYNIPKTFDSDDLIPPYLDQ---YF------------YSH 476

Query: 526 VG-HL----LMDYVKILSTASDCLQTDSKIIQALIQETMMPCECYSLFLHSYGNEIGREG 580
           +G HL      + + +       +  D + ++  I+                       G
Sbjct: 477 IGHHLKNIEHPERMTLFRM----VFLDFRFLEQKIRHDSTAWNA--------------SG 518

Query: 581 STENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVK------ILSTACDCLQ 628
           S  N    +     + P +    P +    + ++D++       I S   D L+
Sbjct: 519 SILNT---LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 3e-04
 Identities = 69/472 (14%), Positives = 138/472 (29%), Gaps = 123/472 (26%)

Query: 15  MKIKYREKTRDLDEMKIQL------------DQSAEFKAKIMESQAA-SSLFRYREKTRD 61
           + +K       + EM  +L            D S+  K +I   QA    L + +     
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 62  LDEMKIQLD--QSAE------FKAKIM--ESQAGLKRELEKLKQEKQEAVEAKEDTADLV 111
           L    + L   Q+A+         KI+       +   L         +++    T    
Sbjct: 247 L----LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL-SAATTTHISLDHHSMTLTPD 301

Query: 112 ETLEMMT--LDKEMAEERAETLQVE---LDLAKEKIEE--------LTLDIELMKADIEK 158
           E   ++   LD    +   E L      L +  E I +          ++ + +   IE 
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 159 SCDGAGDGTEVSHYQIKQLEQQNMRLRETLVRLRDLSAHEIFNNN-----KFDSRL-RDL 212
           S              +  LE    R          LS   +F  +        S +  D+
Sbjct: 362 S--------------LNVLEPAEYR-----KMFDRLS---VFPPSAHIPTILLSLIWFDV 399

Query: 213 SAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAH-- 270
              ++       ++L   S  E     +    +  +        K K ++   + + H  
Sbjct: 400 IKSDVMV---VVNKLHKYSLVEK-QPKESTISIPSIY----LELKVKLEN---EYALHRS 448

Query: 271 --EIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEK 328
             + +N    FDS   DL     + +  F S +     H + N ++              
Sbjct: 449 IVDHYNIPKTFDSD--DLIP--PYLDQYFYSHI----GHHLKNIEH----------PERM 490

Query: 329 HEMSKLQKD---IEEKKQENAELIKSQEKLKQRVTELEADCADL--HEQ--VDAALGAEE 381
                +  D   +E+K       I+           +      L  ++    D     E 
Sbjct: 491 TLFRMVFLDFRFLEQK-------IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543

Query: 382 MVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVE 433
           +V         + D + K  E ++  +   ++   L  + + I  E  ++V+
Sbjct: 544 LVN-------AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 64/392 (16%), Positives = 143/392 (36%), Gaps = 67/392 (17%)

Query: 4    EIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLD 63
            E+Q   E+L   K + ++   +L E++ +  Q  E K  + E      L    E   + +
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEK-----LQAETELYAEAE 912

Query: 64   EMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEM 123
            EM+++L       AK  E +  L     ++++E++ + + + +   + + +  +    E 
Sbjct: 913  EMRVRL------AAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEE 966

Query: 124  AEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMR 183
             E   + LQ+E   A  KI+++  DI +M+    K              + K LE++   
Sbjct: 967  EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKL-----------TKERKLLEERVSD 1015

Query: 184  LRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDS 243
            L   L    + + +     NK +S + +L           + RL+               
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISEL-----------EVRLKKEEK----------- 1053

Query: 244  RLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRD 303
                 S  E+   K K +    DL   +I   + +       L+  E             
Sbjct: 1054 -----SRQELEKIKRKLEGESSDLH-EQIAELQAQIAELKAQLAKKE------------- 1094

Query: 304  LSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELE 363
                E+     + +      +   K ++ +L+  I + +++      ++ K +++  +L 
Sbjct: 1095 ---EELQAALARLEDETSQKNNALK-KIRELESHISDLQEDLESEKAARNKAEKQKRDLS 1150

Query: 364  ADCADLHEQVDAALGAEEMVQQLSVQKLELED 395
             +   L  +++  L      Q+L     + +D
Sbjct: 1151 EELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 61.0 bits (148), Expect = 9e-10
 Identities = 37/218 (16%), Positives = 93/218 (42%), Gaps = 3/218 (1%)

Query: 1    MKAEIQDLKEKLDTMKIKYREKTRDLDE-MKIQLDQSAEFKA--KIMESQAASSLFRYRE 57
            + AE ++++ +L   K +  E   +++  ++ + ++S + +A  K M+ Q      +  E
Sbjct: 907  LYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEE 966

Query: 58   KTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMM 117
            +     +++++   +     K+ +    ++ +  KL +E++   E   D    +   E  
Sbjct: 967  EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK 1026

Query: 118  TLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQL 177
              +    + + E++  EL++  +K E+   ++E +K  +E       +       QI +L
Sbjct: 1027 AKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL 1086

Query: 178  EQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAH 215
            + Q  +  E L         E    N    ++R+L +H
Sbjct: 1087 KAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH 1124

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 24/185 (12%), Positives = 71/185 (38%), Gaps = 3/185 (1%)

Query: 320  LRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGA 379
              + S   + E  K+Q+ + + +++  E   +++KL+      +     + + +      
Sbjct: 939  EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM--- 995

Query: 380  EEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSAT 439
            E+   +L+ ++  LE+ VS     + + E       +L+   + +  EL+  ++    + 
Sbjct: 996  EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR 1055

Query: 440  REVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVKFRELNSLDEKVS 499
            +E+ + K       +D    I + +  +   K    +   + +  + +  +  S      
Sbjct: 1056 QELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNAL 1115

Query: 500  TENIE 504
             +  E
Sbjct: 1116 KKIRE 1120

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.9 bits (114), Expect = 9e-06
 Identities = 34/208 (16%), Positives = 86/208 (41%), Gaps = 11/208 (5%)

Query: 299  SRLRDL--SAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLK 356
            +R+ +    + ++   K K   ++ DL    + E +  QK   EK   + ++ K ++ + 
Sbjct: 934  ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDIL 993

Query: 357  Q---RVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVV 413
                +  +L  +   L E+V         + +   +   L  L +K    I +LE     
Sbjct: 994  IMEDQNNKLTKERKLLEERVSD---LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKK 1050

Query: 414  SDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEA 473
             ++ +++ ++I+ +L+ E         E+  +       LA +E  +      +  E E 
Sbjct: 1051 EEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARL--EDET 1108

Query: 474  ALESLADRELTIVKFRELNSLDEKVSTE 501
            + ++ A +++  ++   ++ L E + +E
Sbjct: 1109 SQKNNALKKIRELE-SHISDLQEDLESE 1135

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 34/192 (17%), Positives = 80/192 (41%), Gaps = 12/192 (6%)

Query: 319  RLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALG 378
             L         E + LQ+ ++ + +  AE  + + +L  +  ELE    ++  +++    
Sbjct: 882  ELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEE-- 939

Query: 379  AEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVEMARSA 438
             EE  QQL  +K +++  +    E++ + EA +      +  A     ++++++ +    
Sbjct: 940  -EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQ 998

Query: 439  TREVIREKEA-------ALESLADRELTIVKFRELVIREKEAALESLADRELTIVKFR-E 490
              ++ +E++           +LA+ E       +L   + E+ +  L  R     K R E
Sbjct: 999  NNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL-KNKHESMISELEVRLKKEEKSRQE 1057

Query: 491  LNSLDEKVSTEN 502
            L  +  K+  E+
Sbjct: 1058 LEKIKRKLEGES 1069

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 41/193 (21%), Positives = 87/193 (45%), Gaps = 13/193 (6%)

Query: 324  SAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALG----A 379
               ++ EM    ++++  K+   +     ++L+Q+ T+L  +   L E++ A       A
Sbjct: 852  VTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEA 911

Query: 380  EEMVQQLSVQKLELEDLVSKQAEEIVDLE----ALQVVSDQLQEDAKEIEIELKEEVEMA 435
            EEM  +L+ +K ELE+++ +    I + E     LQ    ++Q+   ++E +L+EE E A
Sbjct: 912  EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE-EAA 970

Query: 436  RSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIV----KFREL 491
            R   +      +  ++ + D  L +      + +E++   E ++D    +     K + L
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030

Query: 492  NSLDEKVSTENIE 504
              L  K  +   E
Sbjct: 1031 TKLKNKHESMISE 1043

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 70/405 (17%), Positives = 147/405 (36%), Gaps = 62/405 (15%)

Query: 52   LFRYREKTRDLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLV 111
            LF        +   + ++    E   +  E Q   + EL++L+Q+  +  E K     L 
Sbjct: 842  LFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNL---LQ 898

Query: 112  ETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSH 171
            E L+  T     AEE    L  +    +E + E+   IE  +   ++             
Sbjct: 899  EKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQL-----------Q 947

Query: 172  YQIKQLEQQNMRLRETLVRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRDLS 231
             + K+++QQ + L E L                 D +++ +           + +   L+
Sbjct: 948  AEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDD----ILIMEDQNNKLT 1003

Query: 232  AHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEI 291
                    +      +L+  E          + ++L+       KNK +S + +L     
Sbjct: 1004 KERKLLEERVSDLTTNLAEEE---------EKAKNLTKL-----KNKHESMISEL----- 1044

Query: 292  FNNNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKS 351
                  + RL+         ++ + +   R L    + E S L + I E + + AEL   
Sbjct: 1045 ------EVRLKKEE-----KSRQELEKIKRKL----EGESSDLHEQIAELQAQIAEL--- 1086

Query: 352  QEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQ 411
            + +L ++  EL+A  A L ++      A + +++L     +L++ +  +       E   
Sbjct: 1087 KAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK-- 1144

Query: 412  VVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALESLADR 456
                Q ++ ++E+E  LK E+E     T      + +  +   D+
Sbjct: 1145 ----QKRDLSEELE-ALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 24/183 (13%), Positives = 65/183 (35%), Gaps = 6/183 (3%)

Query: 319  RLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALG 378
            R      + +    ++    E KK +     +S E+ K+    LE     L  ++D    
Sbjct: 885  RTLKAIVYLQCCYRRMMAKRELKKLKIEA--RSVERYKKLHIGLENKIMQLQRKIDEQNK 942

Query: 379  A-EEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIE---LKEEVEM 434
              + ++++++  ++       K   ++  L   +  +         ++ E   L++E+  
Sbjct: 943  EYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ 1002

Query: 435  ARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRELTIVKFRELNSL 494
             ++  + +    +            + +   L+  EKE     + D+   I +  E   +
Sbjct: 1003 TQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV 1062

Query: 495  DEK 497
            +E 
Sbjct: 1063 EET 1065

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 27/170 (15%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 313  KNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQ 372
                ++++  L         K+ +  +E K    ++   +        +L +D   L   
Sbjct: 923  HIGLENKIMQLQR-------KIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS 975

Query: 373  VDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEV 432
                   EE  +  + + L L++ ++K  +E+   +        ++E A + + E ++ V
Sbjct: 976  -------EEEAKNATNRVLSLQEEIAKLRKELHQTQT---EKKTIEEWADKYKHETEQLV 1025

Query: 433  EMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALESLADRE 482
               +     +  EKE     + D+   I +  E  + E+   LE   + E
Sbjct: 1026 SELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDE 1075

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.8 bits (114), Expect = 9e-06
 Identities = 29/207 (14%), Positives = 66/207 (31%), Gaps = 14/207 (6%)

Query: 10   EKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEMKIQL 69
            + +    I  +   R             E K+ I++      L R          + +Q 
Sbjct: 836  QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQC 895

Query: 70   DQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAEERAE 129
                             KREL+KLK E +     K+    L   +  +    +   +  +
Sbjct: 896  CYRRMMA----------KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYK 945

Query: 130  TLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRLRETLV 189
            +L  +++  +      T  +      +  S + A + T     ++  L+++  +LR+ L 
Sbjct: 946  SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATN----RVLSLQEEIAKLRKELH 1001

Query: 190  RLRDLSAHEIFNNNKFDSRLRDLSAHE 216
            + +          +K+      L +  
Sbjct: 1002 QTQTEKKTIEEWADKYKHETEQLVSEL 1028

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 18/182 (9%)

Query: 4    EIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLD 63
             ++  K+    ++ K  +  R +DE   +         K +  +  +    Y  +T  L 
Sbjct: 915  SVERYKKLHIGLENKIMQLQRKIDEQNKEY--------KSLLEKMNNLEITYSTETEKLR 966

Query: 64   EMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEM 123
                +L  S E           L+ E+ KL++E  +    K+   +  +        K  
Sbjct: 967  SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY------KHE 1020

Query: 124  AEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMR 183
             E+    L+ +  L K + EEL   I     +I ++ +           +  +L+  + R
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEET----KQLELDLNDER 1076

Query: 184  LR 185
            LR
Sbjct: 1077 LR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 21/143 (14%), Positives = 54/143 (37%), Gaps = 11/143 (7%)

Query: 308  EIFNNKNKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQE---KLKQRVTELEA 364
             +    N  +      +   + ++ +L+   EE K     ++  QE   KL++ + + + 
Sbjct: 946  SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT 1005

Query: 365  DCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEI 424
            +   + E        ++   +      EL++  +    E  +L   + + DQ +E  + +
Sbjct: 1006 EKKTIEEWA------DKYKHETEQLVSELKEQNTLLKTEKEELN--RRIHDQAKEITETM 1057

Query: 425  EIELKEEVEMARSATREVIREKE 447
            E +L EE +       +     +
Sbjct: 1058 EKKLVEETKQLELDLNDERLRYQ 1080

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 16/158 (10%), Positives = 40/158 (25%), Gaps = 7/158 (4%)

Query: 1   MKAEIQDLKEKLDTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTR 60
                 ++      ++   +E    L     +  + A    K          +   +   
Sbjct: 849 AGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVY 908

Query: 61  DLDEMKIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLD 120
                      + + K K +E+  G  + LE        ++ A+    +           
Sbjct: 909 LGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNY-------NGV 961

Query: 121 KEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEK 158
            E+ E +      +    K   E     +      ++K
Sbjct: 962 PELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQK 999

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 23/204 (11%), Positives = 57/204 (27%), Gaps = 7/204 (3%)

Query: 254  FNNKNKFDSRLRDLSAHEIFNNKNKFDSRLRDLSAHEIFNNNKFDSRLRDLSAHEIFNNK 313
                 K +   +     E+    N   ++LR +                D +   +   +
Sbjct: 808  HKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAE 867

Query: 314  NKFDSRLRDLSAHEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQV 373
             +    LR     +K     LQK     K+   E   + + +     E       +  ++
Sbjct: 868  QEHAEALRIELKRQKKIAVLLQKYNRILKKL--ENWATTKSVYLGSNETGDSITAVQAKL 925

Query: 374  DAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIEIELKEEVE 433
                  E    +    + +    +     ++ +L    V   +L E       +    V+
Sbjct: 926  KNL---EAFDGECQSLEGQSNSDLLSILAQLTELNYNGVP--ELTERKDTFFAQQWTGVK 980

Query: 434  MARSATREVIREKEAALESLADRE 457
             +    +  +  +   L+ + D  
Sbjct: 981  SSAETYKNTLLAELERLQKIEDLH 1004

>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus} Length = 585

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 42/286 (14%), Positives = 103/286 (36%), Gaps = 25/286 (8%)

Query: 13  DTMKIKYREKTRDLDEMKIQLDQSAEFKAKIMESQAASSLFRYREKTRDLDEM------- 65
           D M  K+ +  +  +E+++   Q  E + K ++      + +Y+E  R   +        
Sbjct: 8   DAMSQKHLQINQRFEELRLIT-QDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLN 66

Query: 66  -KIQLDQSAEFKAKIMESQAGLKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMA 124
            + ++ +    + K +  +  L+RE + L+Q + E  E  + T  L+   + + LD E+ 
Sbjct: 67  PQERMSRETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELI 126

Query: 125 EERAE--------TLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQ 176
           + +            +  LD+ +   E+L   I   +  I +  +       +     + 
Sbjct: 127 QWKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRR-AEHLCQQLPIPGPVEEM 185

Query: 177 LEQQNMRLRETLVRLRDLSA-------HEIFNNNKFDSRLRDLSAHEIFNNNKFDSRLRD 229
           L + N  + + +  L   +          +    KF + +R L   ++  +         
Sbjct: 186 LAEVNATITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQVKAT 245

Query: 230 LSAHEIFNNNKFDSRLYDLSAHEIFNNKNKFDSRLRDLSAHEIFNN 275
           + + +   +   +    +  + EI NN    +      +    F N
Sbjct: 246 IISEQQAKSLLKNENTRNECSGEILNNCCVMEYHQATGTLSAHFRN 291

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	640
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.37
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.36
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.33
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.87
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.73
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	96.63
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.51
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.71
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.47
3bas_A	89	Myosin heavy chain, striated muscle/general contro	95.4
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.28
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.68
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	93.31
3kta_B	173	Chromosome segregation protein SMC; structural mai	92.89
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	92.78
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	91.74
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	91.54
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	90.37
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	89.29
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	86.07
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	85.55
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	85.09
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	84.76
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	84.69
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	84.08
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	83.86
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	82.69
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	82.4
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	82.06
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	81.92
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	81.91
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	81.05
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	80.05

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.37  E-value=7.2e-07  Score=105.22  Aligned_cols=33  Identities=24%  Similarity=0.181  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q psy15551        124 AEERAETLQVELDLAKEKIEELTLDIELMKADI  156 (640)
Q Consensus       124 aee~~e~l~~el~~~k~k~eel~le~e~lk~e~  156 (640)
                      ++++.+.++.++..+..++++++.+++.+++++
T Consensus       911 ~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l  943 (1184)
T 1i84_S          911 AEEMRVRLAAKKQELEEILHEMEARIEEEEERS  943 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555555555555555555554443

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.36  E-value=0.0017  Score=60.23  Aligned_cols=35  Identities=9%  Similarity=0.066  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        437 SATREVIREKEAALESLADRELTIVKFRELVIREK  471 (640)
Q Consensus       437 sqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQ  471 (640)
                      ..+..+...+......+..+...+.+++..+..+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (284)
T 1c1g_A          244 RSVTKLEKSIDDLEDELYAQKLKYKAISEELDHAL  278 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333344433333333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.33  E-value=0.002  Score=59.76  Aligned_cols=15  Identities=20%  Similarity=0.483  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHhhh
Q psy15551          7 DLKEKLDTMKIKYRE   21 (640)
Q Consensus         7 ~l~~kl~~~~~k~~e   21 (640)
                      .++.|+..|+.....
T Consensus         3 ~~~~~~~~l~~~~~~   17 (284)
T 1c1g_A            3 AIKKKMQMLKLDKEN   17 (284)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHH
Confidence            455555555544433

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.87  E-value=0.023  Score=67.29  Aligned_cols=74  Identities=20%  Similarity=0.342  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        332 SKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE  408 (640)
Q Consensus       332 ~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE  408 (640)
                      ..|+..+++...++.+|......++   ...+..|..|+.+++..-..+..++.+..+..+|+++++++++.+..+.
T Consensus       931 ~eLq~rL~~~e~~n~~L~~~~~~~~---~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ 1004 (1080)
T 2dfs_A          931 MQLQRKIDEQNKEYKSLLEKMNNLE---ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004 (1080)
T ss_dssp             --------------------CHHHH---HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444443322221   2344556666666655555566666666666666666666666665544

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.73  E-value=0.15  Score=50.77  Aligned_cols=49  Identities=16%  Similarity=0.187  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551        328 KHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAA  376 (640)
Q Consensus       328 k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a  376 (640)
                      ..++..+...+.....+...+.....++...+....+.+...+.+++.+
T Consensus        38 e~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v   86 (256)
T 3na7_A           38 LNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI   86 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3445555566666666666666666666666666666666666666543

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=96.63  E-value=0.11  Score=47.24  Aligned_cols=93  Identities=23%  Similarity=0.323  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        327 EKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVD----AALGAEEMVQQLSVQKLELEDLVSKQAE  402 (640)
Q Consensus       327 ~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d----~a~gAEEMVEELTEKNleLEEKIeELEe  402 (640)
                      .-.+|.++..++..++.......+....|..+...+.....+|..||.    .+..++++.+.|..+...|+.+|.++.+
T Consensus        11 ~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~   90 (129)
T 2fxo_A           11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNK   90 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677777777777777777777777778888888888888888884    4566789999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy15551        403 EIVDLEALQVVSDQLQEDAK  422 (640)
Q Consensus       403 tIeDLEaLkELnDELEEnhv  422 (640)
                      .+++.+   +.+++|.....
T Consensus        91 rleeee---e~~~~L~~~kk  107 (129)
T 2fxo_A           91 RLEDEE---EMNAELTAKKR  107 (129)
T ss_dssp             HHHHHH---HHHHHHHHHHH
T ss_pred             HHHHHH---HHHHHHHHHHH
Confidence            888866   22444444433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.51  E-value=0.19  Score=49.88  Aligned_cols=124  Identities=14%  Similarity=0.153  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy15551        345 NAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKE  423 (640)
Q Consensus       345 ~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE  423 (640)
                      +..+......+..++..++..++.++.++.++-   ..++.+..+...++..|.+....+...+ .+....     ++.+
T Consensus        20 i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~---~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-----~~kE   91 (256)
T 3na7_A           20 IDSLEPLIREKRKDLDKALNDKEAKNKAILNLE---EEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-----SERE   91 (256)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-----SSSH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CHHH
Confidence            333333333344455555555555555544332   2244444444444555555554444444 232211     1111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551        424 IEIELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALES  477 (640)
Q Consensus       424 ~EKeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL  477 (640)
                      + ..|..||++....+..+..++....+.++..+..+......+..++..+.+.
T Consensus        92 ~-~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~  144 (256)
T 3na7_A           92 L-RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALEL  144 (256)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 5666777777777777777777777777777777776666666666666554

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.71  E-value=4.2  Score=53.58  Aligned_cols=74  Identities=9%  Similarity=0.193  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        332 SKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE  408 (640)
Q Consensus       332 ~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE  408 (640)
                      .+++..+.++...++.|+..++....+...++.+++..+..++.|   +..|..|+.++..=.+.+..++..+.-|-
T Consensus      2031 ~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA---~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A         2031 DEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRS---IALLDNLNSERGRWEQQSENFNTQMSTVV 2104 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhccccHHHHHHHHHHHHHhcc
Confidence            333444444444455555555555555555555566666666654   55688888888888888888887776654

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.47  E-value=0.41  Score=56.82  Aligned_cols=70  Identities=17%  Similarity=0.189  Sum_probs=36.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        378 GAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATREVIREKEAALE  451 (640)
Q Consensus       378 gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIrEL~rRIeq~eE  451 (640)
                      .++..|..|++++..+++++..+..+.+.++ .+.++.++|+    +.-..|.+|...++.++.++...+....+
T Consensus       981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~----~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A          981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE----QLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666666666666665555555 4444444333    22344455555555555555544444444

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=95.40  E-value=0.16  Score=43.67  Aligned_cols=77  Identities=19%  Similarity=0.269  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        326 HEKHEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIV  405 (640)
Q Consensus       326 ~~k~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIe  405 (640)
                      ..-.+|..+..++...+...+...+....|..+...+.....+|..|   ...++++.+.|..++.+|+.+|.++++.++
T Consensus        11 ~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q---l~eaEe~~~~L~~~K~eLE~~l~el~~rl~   87 (89)
T 3bas_A           11 RQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS---MKQLEDKVEELLSKNYHLENEVARLKKLVG   87 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34456777788888877777777778888888889999999999999   677899999999999999999999988765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.28  E-value=0.84  Score=49.02  Aligned_cols=46  Identities=11%  Similarity=0.027  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        429 KEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAA  474 (640)
Q Consensus       429 REELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedL  474 (640)
                      +++++..+.++.++.++++..+..+..+.+.+...+..+..+.+.+
T Consensus       536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~  581 (597)
T 3oja_B          536 QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK  581 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444555555555555555555555555555544444443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=94.24  E-value=6.9  Score=51.67  Aligned_cols=118  Identities=14%  Similarity=0.088  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh----cHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        353 EKLKQRVTELEADCADLHEQVDAAL----GAE---EMVQQLSVQKLELEDLVSKQAEEIVDLEALQVVSDQLQEDAKEIE  425 (640)
Q Consensus       353 ~~l~~kL~~~e~~~~~l~~q~d~a~----gAE---EMVEELTEKNleLEEKIeELEetIeDLEaLkELnDELEEnhvE~E  425 (640)
                      ++.+.++...++.|+..+..+++-|    -++   ..+.++..+....++++.+.++.+.      ++.+.+...+.+++
T Consensus      1979 ~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~------~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A         1979 RELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATIT------ALEKSIATYKEEYA 2052 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence            3344444555555555555554433    222   2333333333333333444444444      44444444444433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551        426 IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALES  477 (640)
Q Consensus       426 KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeEL  477 (640)
                      .. ..|.+.+...+...+.++..+..=+..+...-.+|.+.+..++.++..+
T Consensus      2053 ~~-~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A         2053 TL-IRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence            22 2233444445555556666666666666666667777777776666544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.68  E-value=0.51  Score=50.70  Aligned_cols=31  Identities=26%  Similarity=0.306  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        344 ENAELIKSQEKLKQRVTELEADCADLHEQVD  374 (640)
Q Consensus       344 ~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d  374 (640)
                      ++.++.....+++.++...++.+..+++.++
T Consensus       457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~  487 (597)
T 3oja_B          457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEID  487 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3334444444444555555555555554444

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=93.31  E-value=1.9  Score=39.07  Aligned_cols=77  Identities=27%  Similarity=0.412  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        329 HEMSKLQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE  408 (640)
Q Consensus       329 ~~~~~~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE  408 (640)
                      .++..|+..+.......++.....+.|..+-.+++..|.++.+.++.   .++....|+...-.++..+.+|+..|++++
T Consensus        48 ~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee---eee~~~~L~~~kkkle~e~~~Lk~~led~e  124 (129)
T 2fxo_A           48 QEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLED---EEEMNAELTAKKRKLEDECSELKRDIDDLE  124 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555666666777777777778888888777775   567777888888888888888888888876

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=92.89  E-value=0.021  Score=53.84  Aligned_cols=44  Identities=16%  Similarity=0.202  Sum_probs=39.3

Q ss_pred             hhhHHHHHHHHHHHhhhhcCCCCCCCcCCccccchhhHHhhhhHHHhc
Q psy15551        582 TENIEKCVTYFNTFYPVLFPGHPSFSSCGSLLMDYVKILSTACDCLQT  629 (640)
Q Consensus       582 ~E~FEKI~~YFn~IFsvLFgGG~A~~~~~L~LtD~~dvL~SGIEIiA~  629 (640)
                      ..+|..++..|+.+|+.+|+||.+    .+.+.+|.+.+..|+++.+.
T Consensus        10 ~~~f~~i~~~f~~~f~~L~~~g~~----~l~l~~~~~~~~~gl~i~~~   53 (173)
T 3kta_B           10 MRTFEAISRNFSEIFAKLSPGGSA----RLILENPEDPFSGGLEIEAK   53 (173)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCEE----EEEESCSSSGGGSCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEE----EEEeeCCCCccccCceEEec
Confidence            457999999999999999999998    88899999989999988764

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=92.78  E-value=6.8  Score=37.18  Aligned_cols=75  Identities=24%  Similarity=0.218  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy15551        335 QKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQV  412 (640)
Q Consensus       335 ~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkE  412 (640)
                      -.+.+.+-.+.+.+....+....++..+++.|.+|.+.+..+-   ..+..|...-....++-..++.+|..|. .|++
T Consensus        13 ae~ad~KyeEvaR~E~dLEraEERae~aE~k~~eLEeeL~~v~---~nlKsLE~seekasqrEd~yEeqIk~L~~kLKE   88 (155)
T 2efr_A           13 LSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVT---NNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKE   88 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555556666666777777777777888888888888777544   3344454444444555555555555554 4443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=91.74  E-value=10  Score=37.00  Aligned_cols=51  Identities=24%  Similarity=0.126  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15551        426 IELKEEVEMARSATREVIREKEAALESLADRELTIVKFRELVIREKEAALE  476 (640)
Q Consensus       426 KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLeE  476 (640)
                      ..|+.-|-.+......+.+........++|++...++.-+...-|+.+|.+
T Consensus       105 ~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E  155 (189)
T 2v71_A          105 EQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE  155 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555666777777777888888888888888888887775

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=91.54  E-value=11  Score=36.85  Aligned_cols=16  Identities=0%  Similarity=0.173  Sum_probs=0.8

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy15551        459 TIVKFRELVIREKEAA  474 (640)
Q Consensus       459 TIsKFRELV~~LQedL  474 (640)
                      ++.++|+.+..|..++
T Consensus       162 ~~QRLkdE~rDLk~El  177 (189)
T 2v71_A          162 SVQRLKDEARDLRQEL  177 (189)
T ss_dssp             CC--------------
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444444444333

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=90.37  E-value=2.8  Score=38.42  Aligned_cols=72  Identities=22%  Similarity=0.362  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhh
Q psy15551         86 LKRELEKLKQEKQEAVEAKEDTADLVETLEMMTLDKEMAE--ERAETLQVELDLAKEKIEELTLDIELMKADIEK  158 (640)
Q Consensus        86 ~~~el~~~k~~~~e~~~~~e~~~d~~~~lem~tldkemae--e~~e~l~~el~~~k~k~eel~le~e~lk~e~e~  158 (640)
                      |+++|.....-+.++...--.-..-+.+| |++|++|-|.  .+.+.|+.|+..++.++.+...++|-||.+++.
T Consensus        30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL-~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~  103 (121)
T 3mq7_A           30 LQQELTEAQKGFQDVEAQAATANHTVMAL-MASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQV  103 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence            56666666666655543222111112222 4455666555  778999999999999999999999999998874

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=89.29  E-value=14  Score=41.13  Aligned_cols=64  Identities=16%  Similarity=0.228  Sum_probs=46.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhcCCCCCCCCcchHHHHHHHHHHHHH
Q psy15551        118 TLDKEMAEERAETLQVELDLAKEKIEELTLDIELMKADIEKSCDGAGDGTEVSHYQIKQLEQQNMRL  184 (640)
Q Consensus       118 tldkemaee~~e~l~~el~~~k~k~eel~le~e~lk~e~e~~~~~~~~~~~~~~~~~~qle~qN~rL  184 (640)
                      +||.-+  .+...||.-|+.+..+|..|+.||.+-..--..+|.. ...-++..-.+..+++|.+.+
T Consensus       125 kVdnQl--snIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr-~~~~~vd~~sY~~~QKQLeQv  188 (562)
T 3ghg_A          125 KVIEKV--QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSR-ALAREVDLKDYEDQQKQLEQV  188 (562)
T ss_dssp             HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSC-CCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-hheeecchHHHHHHHHHHHHH
Confidence            344455  5677899999999999999999999987766666665 344456666666677776654

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=86.07  E-value=6.3  Score=34.04  Aligned_cols=39  Identities=15%  Similarity=0.308  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy15551        380 EEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQ  418 (640)
Q Consensus       380 EEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELE  418 (640)
                      .+.+.....+...+..++..++..+..++ .+..+..++.
T Consensus        63 ~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~  102 (112)
T 1l8d_A           63 EELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK  102 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666666666666666666666666 4555555444

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=85.55  E-value=17  Score=32.65  Aligned_cols=10  Identities=20%  Similarity=0.581  Sum_probs=4.4

Q ss_pred             HHHHHHHHHH
Q psy15551        456 RELTIVKFRE  465 (640)
Q Consensus       456 lE~TIsKFRE  465 (640)
                      ++..|.-||.
T Consensus       115 Ld~EIatYRk  124 (129)
T 3tnu_B          115 LDVEIATYRK  124 (129)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3444444443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=85.09  E-value=16  Score=32.94  Aligned_cols=11  Identities=36%  Similarity=0.549  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHH
Q psy15551        456 RELTIVKFREL  466 (640)
Q Consensus       456 lE~TIsKFREL  466 (640)
                      ++..|.-||.+
T Consensus       117 Ld~EIatYRkL  127 (131)
T 3tnu_A          117 LEQEIATYRRL  127 (131)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            44455555544

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=84.76  E-value=29  Score=33.41  Aligned_cols=105  Identities=18%  Similarity=0.149  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy15551        347 ELIKSQEKLKQRVTELEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIE  425 (640)
Q Consensus       347 ~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~E  425 (640)
                      -+.|++-.+...+..+|..+.+|++.          +-.|......|+..+..|.+.+..-- .....++-+.+... --
T Consensus        31 rlkK~~tEl~k~~~~~E~~~rELq~~----------~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~-ri   99 (168)
T 3o0z_A           31 RLRKSHTEMSKSISQLESLNRELQER----------NRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQA-RI   99 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            34444444444444444444444433          33344444455555555554444333 11111111111111 11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        426 IELKEEVEMARSATREVIREKEAALESLADRELTIVK  462 (640)
Q Consensus       426 KeLREELD~kdsqIrEL~rRIeq~eEqLEDlE~TIsK  462 (640)
                      ..|..|++.....+.........+.+.+.+++...+.
T Consensus       100 ~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~  136 (168)
T 3o0z_A          100 TSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNN  136 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445555555555554444444555555544444433

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=84.69  E-value=15  Score=31.62  Aligned_cols=86  Identities=17%  Similarity=0.236  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hcHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        334 LQKDIEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAA------------LGAEEMVQQLSVQKLELEDLVSKQA  401 (640)
Q Consensus       334 ~~~~~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a------------~gAEEMVEELTEKNleLEEKIeELE  401 (640)
                      +......+.+....+......+...+.+++..+.+|..-=|++            ...++.++.|..+...++..|..|+
T Consensus        11 ~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le   90 (117)
T 2zqm_A           11 MLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALE   90 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444555555555555556665555554322222            2467777888888888888888888


Q ss_pred             HHHHHHH-HHHHHHHHHHH
Q psy15551        402 EEIVDLE-ALQVVSDQLQE  419 (640)
Q Consensus       402 etIeDLE-aLkELnDELEE  419 (640)
                      ..+..++ .+.++...|.+
T Consensus        91 ~~~~~l~~~l~~lk~~l~~  109 (117)
T 2zqm_A           91 RQEKKLNEKLKELTAQIQS  109 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7777777 67666666654

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=84.08  E-value=9.4  Score=35.31  Aligned_cols=26  Identities=27%  Similarity=0.337  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        383 VQQLSVQKLELEDLVSKQAEEIVDLE  408 (640)
Q Consensus       383 VEELTEKNleLEEKIeELEetIeDLE  408 (640)
                      ++.++.++..|.+++.+|+..+..|+
T Consensus       105 ~e~~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A          105 AESSAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=82.69  E-value=14  Score=34.26  Aligned_cols=26  Identities=15%  Similarity=0.234  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        381 EMVQQLSVQKLELEDLVSKQAEEIVD  406 (640)
Q Consensus       381 EMVEELTEKNleLEEKIeELEetIeD  406 (640)
                      ..++.|.+++..|+.++..|+...++
T Consensus       110 ~e~~~l~~~~~~l~~~~~~le~~~~~  135 (138)
T 3hnw_A          110 KEIKELKSEINKYQKNIVKLETELND  135 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555666666666666666655543

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=82.40  E-value=30  Score=36.25  Aligned_cols=68  Identities=24%  Similarity=0.271  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy15551        351 SQEKLKQRVTELEADCADLHEQVDAAL-GAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQ  418 (640)
Q Consensus       351 ~~~~l~~kL~~~e~~~~~l~~q~d~a~-gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELE  418 (640)
                      ...-|+++|++++....+++-|--.+- ..=.+.+.|..+.-.-+.+|++|+.+|..++ .|++...+++
T Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (471)
T 3mq9_A          398 VTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE  467 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333455555555555555555543221 1112223333333333334444444444444 4444444333

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=82.06  E-value=8.9  Score=32.53  Aligned_cols=58  Identities=28%  Similarity=0.296  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hh--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        354 KLKQRVTELEADCADLHEQVDA-AL--GAEEMVQQLSVQKLELEDLVSKQAEEIVDLEALQ  411 (640)
Q Consensus       354 ~l~~kL~~~e~~~~~l~~q~d~-a~--gAEEMVEELTEKNleLEEKIeELEetIeDLEaLk  411 (640)
                      .|-.++..+|+.++.|..++-+ .+  .--+.+..+..+...++..+..+.+.-.+|+++.
T Consensus        26 ~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~~   86 (89)
T 2lw1_A           26 QLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEALK   86 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            3445556677777778888743 22  2235677888888888888888888888887664

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=81.92  E-value=38  Score=32.63  Aligned_cols=36  Identities=6%  Similarity=-0.022  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        440 REVIREKEAALESLADRELTIVKFRELVIREKEAAL  475 (640)
Q Consensus       440 rEL~rRIeq~eEqLEDlE~TIsKFRELV~~LQedLe  475 (640)
                      .++..+|..+...+......+.+.......|++.+.
T Consensus        93 ~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~  128 (168)
T 3o0z_A           93 GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLN  128 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444433333333333333333333

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=81.91  E-value=41  Score=35.17  Aligned_cols=97  Identities=13%  Similarity=0.142  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        362 LEADCADLHEQVDAALGAEEMVQQLSVQKLELEDLVSKQAEEIVDLE-ALQVVSDQLQEDAKEIEIELKEEVEMARSATR  440 (640)
Q Consensus       362 ~e~~~~~l~~q~d~a~gAEEMVEELTEKNleLEEKIeELEetIeDLE-aLkELnDELEEnhvE~EKeLREELD~kdsqIr  440 (640)
                      .+..+.++.++++.++.--.-..+.......|+.+|.+++..+.+++ +-.--    +-+-+.+...|..+.......|.
T Consensus       371 ~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  446 (471)
T 3mq9_A          371 VDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATA----NHTVMALMASLDAEKAQGQKKVE  446 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhc----chhHHHHHHHHHHHHHHHHHHHH
Confidence            46666777777777765555555677777778888888888877777 22111    11112222333333333334455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy15551        441 EVIREKEAALESLADRELTIVK  462 (640)
Q Consensus       441 EL~rRIeq~eEqLEDlE~TIsK  462 (640)
                      |+..+|..+..++++.+..|.+
T Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~  468 (471)
T 3mq9_A          447 ELEGEITTLNHKLQDASAEVER  468 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555544444

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=81.05  E-value=16  Score=40.84  Aligned_cols=29  Identities=10%  Similarity=0.258  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        427 ELKEEVEMARSATREVIREKEAALESLAD  455 (640)
Q Consensus       427 eLREELD~kdsqIrEL~rRIeq~eEqLED  455 (640)
                      +|+.-|.+++..|.+...+|..++..|++
T Consensus       114 ELRRrIqyLKekVdnQlsnIrvLQsnLed  142 (562)
T 3ghg_A          114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRA  142 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444333333

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=80.05  E-value=42  Score=31.89  Aligned_cols=28  Identities=4%  Similarity=-0.312  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551        450 LESLADRELTIVKFRELVIREKEAALES  477 (640)
Q Consensus       450 eEqLEDlE~TIsKFRELV~~LQedLeEL  477 (640)
                      +.....++..+..-...+..++.++.++
T Consensus       114 e~r~~~L~~ql~e~~~~l~~lq~ql~~L  141 (154)
T 2ocy_A          114 EILNKRLTEQLREKDTLLDTLTLQLKNL  141 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444445555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	640
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	86.74
d1gqea_	362	Polypeptide chain release factor 2 (RF2) {Escheric	82.9

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=86.74  E-value=4.5  Score=33.16  Aligned_cols=81  Identities=14%  Similarity=0.202  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15551        338 IEEKKQENAELIKSQEKLKQRVTELEADCADLHEQVDAA------------LGAEEMVQQLSVQKLELEDLVSKQAEEIV  405 (640)
Q Consensus       338 ~e~~~~~~~~l~~~~~~l~~kL~~~e~~~~~l~~q~d~a------------~gAEEMVEELTEKNleLEEKIeELEetIe  405 (640)
                      +..+.++...+......|...+.+.+-.+.+|...=+++            -...+.+..|+.+...++.+|..|+..+.
T Consensus        10 ~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~   89 (107)
T d1fxka_          10 FQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEE   89 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444555555566666666666666543331            24677788888888888888888888887


Q ss_pred             HHH-HHHHHHHHHH
Q psy15551        406 DLE-ALQVVSDQLQ  418 (640)
Q Consensus       406 DLE-aLkELnDELE  418 (640)
                      .++ .+.++...+.
T Consensus        90 ~l~~~l~~~~~~l~  103 (107)
T d1fxka_          90 RVMKKLQEMQVNIQ  103 (107)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            777 6766666654

>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

Probab=82.90  E-value=8.6  Score=38.10  Aligned_cols=40  Identities=28%  Similarity=0.319  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15551        106 DTADLVETLEMMTLDKEMAEERAETLQVELDLAKEKIEELTL  147 (640)
Q Consensus       106 ~~~d~~~~lem~tldkemaee~~e~l~~el~~~k~k~eel~l  147 (640)
                      .+.|+.+.+||+  +.|.-++-.+.+..+++.+...+++|++
T Consensus        73 ~leDl~eL~Ela--~ee~deel~~e~~~~l~~l~~~l~~le~  112 (362)
T d1gqea_          73 GLEDVSGLLELA--VEADDEETFNEAVAELDALEEKLAQLEF  112 (362)
T ss_dssp             HHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHhhhhhHHHH
Confidence            334445555553  2222233344466667777777776553