Psyllid ID: psy15587

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAICCHTVITKRHWLRKPLGSSLVIAILFGDGRKRNGYGPGFDRGNSNKGYYLAMAEKEMDTVRGLIEGTLTREVLPSRNRR
Secondary Structure (PSIPRED)
cHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEcccccEEEEcccccccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHEHHHHHHHHccEEEcccccccccccccccccHEEHEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHccccccccc
Coil and Loop (DISEMBL)
MVDLLQMLEfnvtvtfpaaPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYdaicchtvitkrhwlrkplgsSLVIAILFgdgrkrngygpgfdrgnsnkgYYLAMAEKEMDTVRGLIEgtltrevlpsrnrr
Flexible Loop (DISEMBL)
MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAICCHTVITKrhwlrkplGSSLVIAILFGDgrkrngygpgfdrgnsnKGYYLAMAEKEMDTVRGLiegtltrevlpsrnrr
Low Complexity Region (SEG)
MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAICCHTVITKRHWLRKPLGSSLVIAILFGDGRKRNGYGPGFDRGNSNKGYYLAMAEKEMDTVRGLIEGTLTREVLPSRNRR
Disordered region (IsUnstruct)
***LLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAICCHTVITKRHWLRKPLGSSLVIAILFGDGRKRNGYGPGFDRGNSNKGYYLAMAEKEMDTVRGLIEGTL***********
Disordered Region (DISOPRED)
*VDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAICCHTVITKRHWLRKPLGSSLVIAILFGDGRKRNGYGPGFDRGNSNKGYYLAMAEK***********TLT**********
Disordered Region (DISEMBL)
MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAICCHTVITKRHWLRKPLGSSLVIAILFGDGRKRNGYGPGFDRGNSNKGYYLAMAEKEMDTVRGLIEGTLTREVLPSRNRR
Disordered Region (DISPRO)
MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAICCHTVITKRHWLRKPLGSSLVIAILFGDGRKRNGYGPGFDRGNSNKGYYLAMAEKEMDTVRGLIEGTLTREVL******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAICCHTVITKRHWLRKPLGSSLVIAILFGDGRKRNGYGPGFDRGNSNKGYYLAMAEKEMDTVRGLIEGTLTREVLPSRNRR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
Q4ZIN3	620	Membralin OS=Homo sapiens	no	N/A	0.528	0.119	0.851	7e-33
Q8CIV2	574	Membralin OS=Mus musculus	yes	N/A	0.528	0.128	0.837	5e-32

>sp|Q4ZIN3|MBRL_HUMAN Membralin OS=Homo sapiens GN=C19orf6 PE=1 SV=1

 Score =  139 bits (349), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 69/74 (93%)

Query: 1   MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDA 60
           +VDLLQMLE N+ + FPAAPLLTVILALVGMEAIMSEFF+DT+TAFYIILIVWLADQYDA
Sbjct: 333 IVDLLQMLEMNMAIAFPAAPLLTVILALVGMEAIMSEFFNDTTTAFYIILIVWLADQYDA 392

Query: 61  ICCHTVITKRHWLR 74
           ICCHT  +KRHWLR
Sbjct: 393 ICCHTSTSKRHWLR 406

Homo sapiens (taxid: 9606)

>sp|Q8CIV2|MBRL_MOUSE Membralin OS=Mus musculus GN=ORF61 PE=1 SV=2

 Score =  135 bits (341), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 62/74 (83%), Positives = 68/74 (91%)

Query: 1   MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDA 60
           +VDLLQMLE N+ + FPAAPLLTVILALVGMEAIMSEFF+DT+TAFYIIL VWLADQYDA
Sbjct: 324 IVDLLQMLEMNMAIAFPAAPLLTVILALVGMEAIMSEFFNDTTTAFYIILTVWLADQYDA 383

Query: 61  ICCHTVITKRHWLR 74
           ICCHT  +KRHWLR
Sbjct: 384 ICCHTNTSKRHWLR 397

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
189239008	617	PREDICTED: similar to MGC81609 protein [	0.528	0.119	0.918	3e-34
383860016	734	PREDICTED: membralin-like [Megachile rot	0.528	0.100	0.905	3e-33
405959638	802	Membralin [Crassostrea gigas]	0.528	0.092	0.851	8e-33
340709578	707	PREDICTED: membralin-like [Bombus terres	0.528	0.104	0.878	9e-33
110762636	696	PREDICTED: membralin-like [Apis mellifer	0.528	0.106	0.878	1e-32
380028241	700	PREDICTED: membralin-like [Apis florea]	0.528	0.105	0.878	1e-32
350401095	707	PREDICTED: membralin-like [Bombus impati	0.528	0.104	0.864	1e-32
291240539	635	PREDICTED: membralin-like [Saccoglossus	0.528	0.116	0.864	2e-32
390343752	593	PREDICTED: membralin-like [Strongylocent	0.528	0.124	0.878	3e-32
195153417	1099	GL17213 [Drosophila persimilis] gi|19411	0.585	0.074	0.804	3e-32

>gi|189239008|ref|XP_001814448.1| PREDICTED: similar to MGC81609 protein [Tribolium castaneum]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/74 (91%), Positives = 73/74 (98%)

Query: 1   MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDA 60
           +VDLLQMLEFNVTV+FPAAPLLTVILALVGMEAIMSEFF+DT+TAFYIILIVW+ADQYDA
Sbjct: 372 IVDLLQMLEFNVTVSFPAAPLLTVILALVGMEAIMSEFFNDTTTAFYIILIVWMADQYDA 431

Query: 61  ICCHTVITKRHWLR 74
           ICCHT ITKRHWLR
Sbjct: 432 ICCHTAITKRHWLR 445

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860016|ref|XP_003705487.1| PREDICTED: membralin-like [Megachile rotundata]

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/74 (90%), Positives = 72/74 (97%)

Query: 1   MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDA 60
           +VDLLQMLEFN+TVTFPAA LLTVILALVGMEAIMSEFF+DTSTAFYIILIVW+ADQYDA
Sbjct: 411 IVDLLQMLEFNLTVTFPAASLLTVILALVGMEAIMSEFFNDTSTAFYIILIVWIADQYDA 470

Query: 61  ICCHTVITKRHWLR 74
           ICCHT +TKRHWLR
Sbjct: 471 ICCHTPVTKRHWLR 484

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405959638|gb|EKC25651.1| Membralin [Crassostrea gigas]

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 63/74 (85%), Positives = 71/74 (95%)

Query: 1   MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDA 60
           +VDLLQMLE N+T+ FPAAPLLTVILALVGMEAIM+EFF+DT+TAFYIILIVW+ADQYDA
Sbjct: 395 IVDLLQMLEMNITIAFPAAPLLTVILALVGMEAIMTEFFNDTTTAFYIILIVWIADQYDA 454

Query: 61  ICCHTVITKRHWLR 74
           ICCHT I+KRHWLR
Sbjct: 455 ICCHTNISKRHWLR 468

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|340709578|ref|XP_003393382.1| PREDICTED: membralin-like [Bombus terrestris]

 Score =  144 bits (364), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 65/74 (87%), Positives = 72/74 (97%)

Query: 1   MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDA 60
           +VDLLQMLEFN+TVTFPAA LLTV+LALVGMEAIMSEFF+DT+TAFYIILIVW+ADQYDA
Sbjct: 413 IVDLLQMLEFNLTVTFPAASLLTVLLALVGMEAIMSEFFNDTTTAFYIILIVWIADQYDA 472

Query: 61  ICCHTVITKRHWLR 74
           ICCHT +TKRHWLR
Sbjct: 473 ICCHTPVTKRHWLR 486

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110762636|ref|XP_624234.2| PREDICTED: membralin-like [Apis mellifera]

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/74 (87%), Positives = 72/74 (97%)

Query: 1   MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDA 60
           +VDLLQMLEFN+TVTFPAA LLTV+LALVGMEAIMSEFF+DT+TAFYIILIVW+ADQYDA
Sbjct: 411 IVDLLQMLEFNLTVTFPAASLLTVLLALVGMEAIMSEFFNDTTTAFYIILIVWIADQYDA 470

Query: 61  ICCHTVITKRHWLR 74
           ICCHT +TKRHWLR
Sbjct: 471 ICCHTPVTKRHWLR 484

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028241|ref|XP_003697815.1| PREDICTED: membralin-like [Apis florea]

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/74 (87%), Positives = 72/74 (97%)

Query: 1   MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDA 60
           +VDLLQMLEFN+TVTFPAA LLTV+LALVGMEAIMSEFF+DT+TAFYIILIVW+ADQYDA
Sbjct: 413 IVDLLQMLEFNLTVTFPAASLLTVLLALVGMEAIMSEFFNDTTTAFYIILIVWIADQYDA 472

Query: 61  ICCHTVITKRHWLR 74
           ICCHT +TKRHWLR
Sbjct: 473 ICCHTPVTKRHWLR 486

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401095|ref|XP_003486047.1| PREDICTED: membralin-like [Bombus impatiens]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/74 (86%), Positives = 72/74 (97%)

Query: 1   MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDA 60
           +VDLLQMLEFN+T+TFPAA LLTV+LALVGMEAIMSEFF+DT+TAFYIILIVW+ADQYDA
Sbjct: 413 IVDLLQMLEFNLTITFPAASLLTVLLALVGMEAIMSEFFNDTTTAFYIILIVWIADQYDA 472

Query: 61  ICCHTVITKRHWLR 74
           ICCHT +TKRHWLR
Sbjct: 473 ICCHTPVTKRHWLR 486

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291240539|ref|XP_002740177.1| PREDICTED: membralin-like [Saccoglossus kowalevskii]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/74 (86%), Positives = 71/74 (95%)

Query: 1   MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDA 60
           +VDLLQMLE NVT+ FPAAPLLTVILALVGMEAIMSEFF+DT+TAFYIILIVW+ADQYDA
Sbjct: 315 IVDLLQMLEMNVTIAFPAAPLLTVILALVGMEAIMSEFFNDTTTAFYIILIVWIADQYDA 374

Query: 61  ICCHTVITKRHWLR 74
           ICCHT+ +KRHWLR
Sbjct: 375 ICCHTITSKRHWLR 388

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|390343752|ref|XP_793244.3| PREDICTED: membralin-like [Strongylocentrotus purpuratus]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/74 (87%), Positives = 70/74 (94%)

Query: 1   MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDA 60
           +VDLLQMLE N T+ FPAAPLLTVILALVGMEAIMSEFF+DT+TAFYIILIVW+ADQYDA
Sbjct: 220 IVDLLQMLEMNTTIAFPAAPLLTVILALVGMEAIMSEFFNDTTTAFYIILIVWVADQYDA 279

Query: 61  ICCHTVITKRHWLR 74
           ICCHT ITKRHWLR
Sbjct: 280 ICCHTQITKRHWLR 293

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|195153417|ref|XP_002017623.1| GL17213 [Drosophila persimilis] gi|194113419|gb|EDW35462.1| GL17213 [Drosophila persimilis]

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/82 (80%), Positives = 73/82 (89%)

Query: 1   MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDA 60
           +VDLLQMLE+NV+  FP APLLTVILALVGMEAIMSEFF+DT+TAFYIILIVW+ADQYDA
Sbjct: 349 IVDLLQMLEYNVSARFPIAPLLTVILALVGMEAIMSEFFNDTTTAFYIILIVWIADQYDA 408

Query: 61  ICCHTVITKRHWLRKPLGSSLV 82
           ICCHT ITKRHWLR  L  S +
Sbjct: 409 ICCHTSITKRHWLRCRLPHSFI 430

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
ZFIN|ZDB-GENE-080225-14	694	tmem259 "transmembrane protein	0.528	0.106	0.864	4.8e-30
FB|FBgn0034071	960	CG8405 [Drosophila melanogaste	0.528	0.077	0.864	8.1e-30
UNIPROTKB|Q4ZIN3	620	TMEM259 "Membralin" [Homo sapi	0.528	0.119	0.851	9e-30
MGI|MGI:2177957	574	Tmem259 "transmembrane protein	0.528	0.128	0.837	3e-29
WB|WBGene00021985	593	Y59C2A.2 [Caenorhabditis elega	0.528	0.124	0.648	3.3e-22

ZFIN|ZDB-GENE-080225-14 tmem259 "transmembrane protein 259" [Danio rerio (taxid:7955)]

 Score = 340 (124.7 bits), Expect = 4.8e-30, P = 4.8e-30
 Identities = 64/74 (86%), Positives = 70/74 (94%)

Query:     1 MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDA 60
             +VDLLQMLE N+T+ FPAAPLLTVILALVGMEAIMSEFF+DT+TAFYIILIVWLADQYDA
Sbjct:   358 IVDLLQMLEMNMTIAFPAAPLLTVILALVGMEAIMSEFFNDTTTAFYIILIVWLADQYDA 417

Query:    61 ICCHTVITKRHWLR 74
             ICCHT  +KRHWLR
Sbjct:   418 ICCHTNTSKRHWLR 431

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0034071 CG8405 [Drosophila melanogaster (taxid:7227)]

 Score = 341 (125.1 bits), Expect = 8.1e-30, P = 8.1e-30
 Identities = 64/74 (86%), Positives = 70/74 (94%)

Query:     1 MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDA 60
             +VDLLQMLE+NV+  FP APLLTVILALVGMEAIMSEFF+DT+TAFYIILIVW+ADQYDA
Sbjct:   347 IVDLLQMLEYNVSARFPIAPLLTVILALVGMEAIMSEFFNDTTTAFYIILIVWIADQYDA 406

Query:    61 ICCHTVITKRHWLR 74
             ICCHT ITKRHWLR
Sbjct:   407 ICCHTSITKRHWLR 420

GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IGI

UNIPROTKB|Q4ZIN3 TMEM259 "Membralin" [Homo sapiens (taxid:9606)]

 Score = 336 (123.3 bits), Expect = 9.0e-30, P = 9.0e-30
 Identities = 63/74 (85%), Positives = 69/74 (93%)

Query:     1 MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDA 60
             +VDLLQMLE N+ + FPAAPLLTVILALVGMEAIMSEFF+DT+TAFYIILIVWLADQYDA
Sbjct:   333 IVDLLQMLEMNMAIAFPAAPLLTVILALVGMEAIMSEFFNDTTTAFYIILIVWLADQYDA 392

Query:    61 ICCHTVITKRHWLR 74
             ICCHT  +KRHWLR
Sbjct:   393 ICCHTSTSKRHWLR 406

GO:0016021 "integral to membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:2177957 Tmem259 "transmembrane protein 259" [Mus musculus (taxid:10090)]

 Score = 330 (121.2 bits), Expect = 3.0e-29, P = 3.0e-29
 Identities = 62/74 (83%), Positives = 68/74 (91%)

Query:     1 MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDA 60
             +VDLLQMLE N+ + FPAAPLLTVILALVGMEAIMSEFF+DT+TAFYIIL VWLADQYDA
Sbjct:   324 IVDLLQMLEMNMAIAFPAAPLLTVILALVGMEAIMSEFFNDTTTAFYIILTVWLADQYDA 383

Query:    61 ICCHTVITKRHWLR 74
             ICCHT  +KRHWLR
Sbjct:   384 ICCHTNTSKRHWLR 397

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00021985 Y59C2A.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 266 (98.7 bits), Expect = 3.3e-22, P = 3.3e-22
 Identities = 48/74 (64%), Positives = 60/74 (81%)

Query:     1 MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDA 60
             ++DLL M E    +  P APL+TV+LALVGMEAIM+E F+DTS AFY+ILIVW+ADQYDA
Sbjct:   405 IIDLLHMFELQQPLNPPVAPLITVVLALVGMEAIMAEVFNDTSIAFYVILIVWVADQYDA 464

Query:    61 ICCHTVITKRHWLR 74
             ICCH+  +K+ WLR
Sbjct:   465 ICCHSATSKKFWLR 478


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.141   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      140       140   0.00091  102 3  11 22  0.37    31
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  583 (62 KB)
  Total size of DFA:  131 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.27u 0.09s 12.36t   Elapsed:  00:00:04
  Total cpu time:  12.27u 0.09s 12.36t   Elapsed:  00:00:04
  Start:  Thu Aug 15 11:03:52 2013   End:  Thu Aug 15 11:03:56 2013

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8CIV2	MBRL_MOUSE	No assigned EC number	0.8378	0.5285	0.1289	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	140
pfam09746	375	pfam09746, Membralin, Tumour-associated protein	2e-45

>gnl|CDD|118278 pfam09746, Membralin, Tumour-associated protein

 Score =  151 bits (383), Expect = 2e-45
 Identities = 61/70 (87%), Positives = 67/70 (95%)

Query: 1   MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDA 60
           +VDLLQMLE+NV+  FPAAPLLTVILALVGMEAIMSEFF+DT+TAFYIILIVW+ADQYDA
Sbjct: 306 IVDLLQMLEYNVSARFPAAPLLTVILALVGMEAIMSEFFNDTTTAFYIILIVWIADQYDA 365

Query: 61  ICCHTVITKR 70
           ICCHT ITKR
Sbjct: 366 ICCHTSITKR 375

Membralin is evolutionarily highly conserved; though it seems to represent a unique protein family. The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato. Length = 375

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
PF09746	375	Membralin: Tumour-associated protein; InterPro: IP	100.0
KOG2092|consensus	381		98.56

>PF09746 Membralin: Tumour-associated protein; InterPro: IPR019144 Membralin is evolutionarily highly conserved, though it appears to represent a unique protein family

Probab=100.00  E-value=6.1e-37  Score=262.96  Aligned_cols=70  Identities=84%  Similarity=1.337  Sum_probs=69.1

Q ss_pred             ChhhhhhhhhceeeecCchhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhhhhhccccceeeeecccccc
Q psy15587          1 MVDLLQMLEFNVTVTFPAAPLLTVILALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAICCHTVITKR   70 (140)
Q Consensus         1 ivDLLqMLefN~~l~fPaapLlTVILaLVGmeaIMsEFFnDtttAFYVILiVWlADqYdaicchT~iSkr   70 (140)
                      |+||+||+|+|.++.+|+|||+||||||||||+||||||||++|||||||+||+|||||+||||||+|||
T Consensus       306 iv~ll~~~~~~~~~~~p~a~llt~il~lvgm~~~m~eff~d~~~af~vil~vw~~d~~~~i~c~t~~~~r  375 (375)
T PF09746_consen  306 IVDLLQMLEHNLPIFFPAAPLLTVILALVGMEAIMSEFFNDTTTAFYVILIVWLADQYDAICCHTPISKR  375 (375)
T ss_pred             HHHHHHHHHhcCccccccceeeeeehhhHHHHHHHHHHhcchhHHHHHHHHHHHHhhccEEEecCccCCC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999997

The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers []. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato [].

>KOG2092|consensus

Probab=98.56  E-value=3.3e-08  Score=86.55  Aligned_cols=92  Identities=29%  Similarity=0.495  Sum_probs=80.7

Q ss_pred             hhhhhhhceee------ecCchhHHHHHH--------HHHHHHHHHhhhcCCcchhhhhhhhhhhccccceeeeeccccc
Q psy15587          4 LLQMLEFNVTV------TFPAAPLLTVIL--------ALVGMEAIMSEFFSDTSTAFYIILIVWLADQYDAICCHTVITK   69 (140)
Q Consensus         4 LLqMLefN~~l------~fPaapLlTVIL--------aLVGmeaIMsEFFnDtttAFYVILiVWlADqYdaicchT~iSk   69 (140)
                      -.||..|.++|      +.|+..++.|--        .+||+....+||++|+..+||+.+.||+|+.+.++..+||++|
T Consensus       113 w~R~gi~rVev~~H~s~r~p~Fl~f~~~~~~~~vF~~~aI~i~s~l~~~~~e~~e~~m~~~~~~~~~~f~ld~e~~~i~k  192 (381)
T KOG2092|consen  113 WTRMGIFRVEVQHHASHRLPTFLLFFVHVIESLVFVPIAIGILSFLFEFYDEQLEAFMVLVLVWLCELFTLDSERTPISK  192 (381)
T ss_pred             hhhheeEEEEEEecchhcchHHHHHHhhhcccccccchhhhHHHhhHHHhcccHHHHHHHHHHHHHHheeeecccccccC
Confidence            45788888877      489999888622        3788999999999999999999999999999999999999999


Q ss_pred             cccccccc--hhhhhhheeecCCccccCCCCCcC
Q psy15587         70 RHWLRKPL--GSSLVIAILFGDGRKRNGYGPGFD  101 (140)
Q Consensus        70 rhWlRF~l--~~~l~~~ilf~~~~~~~~~~~~~~  101 (140)
                      |+.+|++|  ++.+++||+|=.      |-||+.
T Consensus       193 ~~~p~e~Lnd~~e~~fh~~~f~------~~~g~~  220 (381)
T KOG2092|consen  193 KFFPREFLNDLYELVFHIYFFS------YAYGFS  220 (381)
T ss_pred             CCCcHHHhcchhhcccchhhhh------hccCch
Confidence            99999999  999999999853      566654

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00