Psyllid ID: psy15621

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIKLFY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHccccccccccccEEcccccccccHEEHHccHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccEEcc
Coil and Loop (DISEMBL)
mgfgdypaeykpqvhgpydparyygkpdtplgqvklgelgswfgrrnyspramTAATSRAFWRWNhkyilpkksnmagTLHVLFGLSLFFYvinypriklfy
Flexible Loop (DISEMBL)
mgfgdypaeykpqvhgpyDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIKLFY
Low Complexity Region (SEG)
MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIKLFY
Disordered region (IsUnstruct)
********************ARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIKLF*
Disordered Region (DISOPRED)
*GFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIKLFY
Disordered Region (DISEMBL)
MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIKLFY
Disordered Region (DISPRO)
*GFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIKLFY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIKLFY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
Q9W141	107	Putative ATP synthase sub	yes	N/A	0.970	0.925	0.595	5e-32
P56134	94	ATP synthase subunit f, m	yes	N/A	0.705	0.765	0.402	2e-07
Q5R6T5	94	ATP synthase subunit f, m	yes	N/A	0.705	0.765	0.402	2e-07
Q22021	153	Putative ATP synthase sub	yes	N/A	0.882	0.588	0.347	5e-07
Q95339	88	ATP synthase subunit f, m	yes	N/A	0.705	0.818	0.375	9e-07
P56135	88	ATP synthase subunit f, m	yes	N/A	0.705	0.818	0.361	1e-06
Q28851	88	ATP synthase subunit f, m	yes	N/A	0.705	0.818	0.347	9e-06
D3ZAF6	88	ATP synthase subunit f, m	no	N/A	0.705	0.818	0.347	2e-05

>sp|Q9W141|ATPK_DROME Putative ATP synthase subunit f, mitochondrial OS=Drosophila melanogaster GN=CG4692 PE=1 SV=1

 Score =  136 bits (342), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 59/99 (59%), Positives = 74/99 (74%)

Query: 1  MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRA 60
          M FGDYPAEY P+VHGPYDPAR+YGK D P GQVKLGE+G+W GRRN +P A+  A SRA
Sbjct: 1  MAFGDYPAEYNPKVHGPYDPARFYGKADVPFGQVKLGEIGAWLGRRNKTPNAVAGAVSRA 60

Query: 61 FWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIK 99
          +WRW HKY+ PK++ +A    +      FFY+INY ++K
Sbjct: 61 WWRWQHKYVFPKRAGIAPFFQLTVASMTFFYLINYTKLK 99

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. Minor subunit located with subunit a in the membrane.
Drosophila melanogaster (taxid: 7227)

>sp|P56134|ATPK_HUMAN ATP synthase subunit f, mitochondrial OS=Homo sapiens GN=ATP5J2 PE=2 SV=3

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 42/72 (58%)

Query: 28 DTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLS 87
          D  L +VKLGEL SW   R++SP  +  A  R ++R+ +KYI  KK +++G   VL    
Sbjct: 15 DKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGITMVLACYV 74

Query: 88 LFFYVINYPRIK 99
          LF Y  +Y  +K
Sbjct: 75 LFSYSFSYKHLK 86

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. Minor subunit located with subunit a in the membrane.

Homo sapiens (taxid: 9606)

>sp|Q5R6T5|ATPK_PONAB ATP synthase subunit f, mitochondrial OS=Pongo abelii GN=ATP5J2 PE=3 SV=3

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 42/72 (58%)

Query: 28 DTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLS 87
          D  L +VKLGEL SW   R++SP  +  A  R ++R+ +KYI  KK +++G   VL    
Sbjct: 15 DKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGITMVLACYV 74

Query: 88 LFFYVINYPRIK 99
          LF Y  +Y  +K
Sbjct: 75 LFSYSFSYKHLK 86

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. Minor subunit located with subunit a in the membrane.

Pongo abelii (taxid: 9601)

>sp|Q22021|ATPK_CAEEL Putative ATP synthase subunit f, mitochondrial OS=Caenorhabditis elegans GN=R53.4 PE=3 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 4   GDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWR 63
           G +   +   VHGPY   RYYGK DT    VKLG+L +W  RR  +P A      R  WR
Sbjct: 47  GLFDKRWNKNVHGPYCHWRYYGKLDTKFMDVKLGDLPAWMARREKTPSAFYNEFMRNIWR 106

Query: 64  WNHKYILPKKSNMAGTLHVLFGLSLFFYVINY 95
            ++ Y      N   T+ V+F     +  +N+
Sbjct: 107 VHNLYYSGPVYN--NTVKVIFRFIFAYSFLNW 136

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. Minor subunit located with subunit a in the membrane.

Caenorhabditis elegans (taxid: 6239)

>sp|Q95339|ATPK_PIG ATP synthase subunit f, mitochondrial OS=Sus scrofa GN=ATP5J2 PE=3 SV=4

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 42/72 (58%)

Query: 28 DTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLS 87
          D  L +VKLGEL SW   R+++P  +  A  R ++R+ +KY+  KK ++AG   VL    
Sbjct: 9  DRRLLEVKLGELPSWILMRDFTPSGIAGAFQRGYYRYYNKYVNVKKGSVAGLSMVLAAYV 68

Query: 88 LFFYVINYPRIK 99
          +F Y  +Y  +K
Sbjct: 69 VFNYCRSYKELK 80

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. Minor subunit located with subunit a in the membrane.

Sus scrofa (taxid: 9823)

>sp|P56135|ATPK_MOUSE ATP synthase subunit f, mitochondrial OS=Mus musculus GN=Atp5j2 PE=1 SV=3

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 42/72 (58%)

Query: 28 DTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLS 87
          +  L +VKLGEL SW   R+++P  +  A  R + R+ +KYI  +K +++G   VL    
Sbjct: 9  EKKLMEVKLGELPSWIMMRDFTPSGIAGAFRRGYDRYYNKYINVRKGSISGISMVLAAYV 68

Query: 88 LFFYVINYPRIK 99
          +F Y I+Y  +K
Sbjct: 69 VFSYCISYKELK 80

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. Minor subunit located with subunit a in the membrane.

Mus musculus (taxid: 10090)

>sp|Q28851|ATPK_BOVIN ATP synthase subunit f, mitochondrial OS=Bos taurus GN=ATP5J2 PE=1 SV=3

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%)

Query: 28 DTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLS 87
          +  L +VKLGEL SW   R+++P  +  A  R ++R+ +KY+  KK ++AG   VL    
Sbjct: 9  EKKLLEVKLGELPSWILMRDFTPSGIAGAFQRGYYRYYNKYVNVKKGSIAGLSMVLAAYV 68

Query: 88 LFFYVINYPRIK 99
             Y  +Y  +K
Sbjct: 69 FLNYCRSYKELK 80

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. Minor subunit located with subunit a in the membrane.

Bos taurus (taxid: 9913)

>sp|D3ZAF6|ATPK_RAT ATP synthase subunit f, mitochondrial OS=Rattus norvegicus GN=Atp5j2 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%)

Query: 28 DTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLS 87
          +  L +VKL EL SW   R+++P  +  A  R + R+ +KYI  +K +++G   VL    
Sbjct: 9  EKKLMEVKLRELPSWILMRDFTPSGIAGAFRRGYDRYYNKYINVRKGSISGINMVLAAYV 68

Query: 88 LFFYVINYPRIK 99
          +F Y I+Y  +K
Sbjct: 69 VFSYCISYKELK 80

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. Minor subunit located with subunit a in the membrane.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
357629820	123	hypothetical protein KGM_16847 [Danaus p	0.970	0.804	0.686	3e-33
215259655	107	mitochondrial ATP synthase F chain [Cule	0.970	0.925	0.666	9e-33
94468562	107	mitochondrial ATP synthase F chain [Aede	0.970	0.925	0.666	1e-32
170037788	107	mitochondrial ATP synthase F chain [Cule	0.970	0.925	0.656	2e-32
195121480	107	GI20386 [Drosophila mojavensis] gi|19391	0.970	0.925	0.636	2e-32
195170386	107	GL10106 [Drosophila persimilis] gi|19411	0.970	0.925	0.636	5e-32
389609401	107	ATP synthase F chain [Papilio xuthus]	0.970	0.925	0.646	5e-32
125811343	107	GA18359 [Drosophila pseudoobscura pseudo	0.970	0.925	0.636	5e-32
195383286	107	GJ22112 [Drosophila virilis] gi|19414515	0.970	0.925	0.636	6e-32
195029019	107	GH21887 [Drosophila grimshawi] gi|193903	0.970	0.925	0.636	1e-31

>gi|357629820|gb|EHJ78361.1| hypothetical protein KGM_16847 [Danaus plexippus]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/99 (68%), Positives = 74/99 (74%)

Query: 1  MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRA 60
          MGFGDYP EY P VHGPYDPARYYGKPDTP GQVKL E+GSWF RRN SP A   A SRA
Sbjct: 1  MGFGDYPKEYNPAVHGPYDPARYYGKPDTPFGQVKLSEIGSWFARRNKSPSAFMGACSRA 60

Query: 61 FWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIK 99
          +WRW HKY+ PKK  MA    +L G   FFYVINY ++K
Sbjct: 61 WWRWQHKYVQPKKVGMAPFFQLLVGSMTFFYVINYGKMK 99

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|215259655|gb|ACJ64319.1| mitochondrial ATP synthase F chain [Culex tarsalis]

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 66/99 (66%), Positives = 77/99 (77%)

Query: 1  MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRA 60
          M FGDYPAEY P+VHGPYDPAR+YGKPDTP GQVKLGELG+WFGRR+ +PRA   A SRA
Sbjct: 1  MAFGDYPAEYNPKVHGPYDPARFYGKPDTPFGQVKLGELGAWFGRRDKNPRAAAGAVSRA 60

Query: 61 FWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIK 99
          FWRW HKY  PK+  +A    V+ G  +FFY INY ++K
Sbjct: 61 FWRWQHKYWQPKRMGIAPFFQVIVGGMVFFYTINYGKLK 99

Source: Culex tarsalis

Species: Culex tarsalis

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|94468562|gb|ABF18130.1| mitochondrial ATP synthase F chain [Aedes aegypti]

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/99 (66%), Positives = 77/99 (77%)

Query: 1  MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRA 60
          M FGDYPAEY P+VHGPYDPARYYGKPDTPLGQVKL ELG+WFGRR+ +P+A   A SRA
Sbjct: 1  MAFGDYPAEYNPKVHGPYDPARYYGKPDTPLGQVKLNELGAWFGRRDKNPKAAAGAVSRA 60

Query: 61 FWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIK 99
          FWRW HKY  PK+  +A    V+ G  +FFY INY ++K
Sbjct: 61 FWRWQHKYWQPKRMGIAPFFQVIVGGMVFFYAINYGKLK 99

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170037788|ref|XP_001846737.1| mitochondrial ATP synthase F chain [Culex quinquefasciatus] gi|167881141|gb|EDS44524.1| mitochondrial ATP synthase F chain [Culex quinquefasciatus]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 77/99 (77%)

Query: 1  MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRA 60
          M FGDYPAEY P+VHGPYDPAR+YGKPDTP GQVKLGELG+WFGRR+ +PRA   A SR+
Sbjct: 1  MAFGDYPAEYNPKVHGPYDPARFYGKPDTPFGQVKLGELGAWFGRRDKNPRAAVGAVSRS 60

Query: 61 FWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIK 99
          FWRW HKY  PK+  +A    V+ G  +FFY INY ++K
Sbjct: 61 FWRWQHKYWQPKRMGIAPFFQVIVGGMVFFYTINYGKLK 99

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195121480|ref|XP_002005248.1| GI20386 [Drosophila mojavensis] gi|193910316|gb|EDW09183.1| GI20386 [Drosophila mojavensis]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 75/99 (75%)

Query: 1  MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRA 60
          M FGDYPAEY P+ HGPYDPARYYGK D P GQVKLGELG+WFGRRN SP A+  A SRA
Sbjct: 1  MAFGDYPAEYNPKTHGPYDPARYYGKADVPFGQVKLGELGAWFGRRNKSPSAIAGAVSRA 60

Query: 61 FWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIK 99
          +WRW HKY+ PK++ +A    +      FFY+INYP++K
Sbjct: 61 WWRWQHKYVFPKRAGIAPFFQLTVASMAFFYIINYPKLK 99

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195170386|ref|XP_002025994.1| GL10106 [Drosophila persimilis] gi|194110858|gb|EDW32901.1| GL10106 [Drosophila persimilis]

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 75/99 (75%)

Query: 1  MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRA 60
          M FGDYPAEY P+VHGPYDPAR+YGK D P GQVKLGELGSWFGRRN +P AM  A SRA
Sbjct: 1  MAFGDYPAEYNPKVHGPYDPARFYGKADVPFGQVKLGELGSWFGRRNKTPNAMVGAVSRA 60

Query: 61 FWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIK 99
          +WRW HKY+ PK++ +A    +      FFY+INY ++K
Sbjct: 61 WWRWQHKYVFPKRAGIAPFFQLTVASMTFFYMINYTKLK 99

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389609401|dbj|BAM18312.1| ATP synthase F chain [Papilio xuthus]

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 64/99 (64%), Positives = 75/99 (75%)

Query: 1  MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRA 60
          M FGDYP EY P VHGPYDPARYYGKPDTP GQ+KL E+G+WFGRRN +P A+  A SRA
Sbjct: 1  MAFGDYPKEYNPAVHGPYDPARYYGKPDTPFGQLKLNEIGAWFGRRNKTPSALMGACSRA 60

Query: 61 FWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIK 99
          +WRW HKY+ PK+  MA    +L G   FFYVINY ++K
Sbjct: 61 WWRWQHKYVQPKRVGMAPFFQLLVGSMTFFYVINYGKMK 99

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125811343|ref|XP_001361845.1| GA18359 [Drosophila pseudoobscura pseudoobscura] gi|54637021|gb|EAL26424.1| GA18359 [Drosophila pseudoobscura pseudoobscura]

 Score =  141 bits (355), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 75/99 (75%)

Query: 1  MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRA 60
          M FGDYPAEY P+VHGPYDPAR+YGK D P GQVKLGELGSWFGRRN +P AM  A SRA
Sbjct: 1  MAFGDYPAEYNPKVHGPYDPARFYGKADVPFGQVKLGELGSWFGRRNKTPNAMVGAVSRA 60

Query: 61 FWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIK 99
          +WRW HKY+ PK++ +A    +      FFY+INY ++K
Sbjct: 61 WWRWQHKYVFPKRAGIAPFFQLTVASMAFFYMINYTKLK 99

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195383286|ref|XP_002050357.1| GJ22112 [Drosophila virilis] gi|194145154|gb|EDW61550.1| GJ22112 [Drosophila virilis]

 Score =  140 bits (354), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 75/99 (75%)

Query: 1  MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRA 60
          M FGDYPAEY P+VHGPYDPARYYGK D P GQVKLGELGSWFGRRN +P A+  A SRA
Sbjct: 1  MAFGDYPAEYNPKVHGPYDPARYYGKADVPFGQVKLGELGSWFGRRNKTPSAIAGAVSRA 60

Query: 61 FWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIK 99
          +WRW HKY+ PK++ +A    +      FFY+INY ++K
Sbjct: 61 WWRWQHKYVFPKRAGIAPFFQLTVASMTFFYLINYTKLK 99

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195029019|ref|XP_001987372.1| GH21887 [Drosophila grimshawi] gi|193903372|gb|EDW02239.1| GH21887 [Drosophila grimshawi]

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 75/99 (75%)

Query: 1  MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRA 60
          M FGDYPAEY P+VHGPYDPARYYGK D P GQVKLGELG+WFGRRN +P AM  A SRA
Sbjct: 1  MAFGDYPAEYNPKVHGPYDPARYYGKADVPFGQVKLGELGAWFGRRNKTPNAMGGAISRA 60

Query: 61 FWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIK 99
          +WRW HKY+ PK++ +A    +      FFY+INY ++K
Sbjct: 61 WWRWQHKYVFPKRAGIAPFFQLTVASMTFFYLINYSKLK 99

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
FB|FBgn0035032	107	CG4692 [Drosophila melanogaste	0.970	0.925	0.595	5.2e-33
WB|WBGene00011273	153	R53.4 [Caenorhabditis elegans	0.882	0.588	0.347	2.2e-09
UNIPROTKB|P56134	94	ATP5J2 "ATP synthase subunit f	0.705	0.765	0.402	9.7e-09
UNIPROTKB|Q5R6T5	94	ATP5J2 "ATP synthase subunit f	0.705	0.765	0.402	9.7e-09
UNIPROTKB|Q95339	88	ATP5J2 "ATP synthase subunit f	0.705	0.818	0.375	2.6e-08
MGI|MGI:1927558	88	Atp5j2 "ATP synthase, H+ trans	0.676	0.784	0.376	8.7e-08
UNIPROTKB|Q28851	88	ATP5J2 "ATP synthase subunit f	0.656	0.761	0.358	2.9e-07
UNIPROTKB|F1NHF1	94	F1NHF1 "Uncharacterized protei	0.705	0.765	0.319	4.8e-07
RGD|1596067	88	Atp5j2 "ATP synthase, H+ trans	0.676	0.784	0.362	1e-06

FB|FBgn0035032 CG4692 [Drosophila melanogaster (taxid:7227)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 59/99 (59%), Positives = 74/99 (74%)

Query:     1 MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRA 60
             M FGDYPAEY P+VHGPYDPAR+YGK D P GQVKLGE+G+W GRRN +P A+  A SRA
Sbjct:     1 MAFGDYPAEYNPKVHGPYDPARFYGKADVPFGQVKLGEIGAWLGRRNKTPNAVAGAVSRA 60

Query:    61 FWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIK 99
             +WRW HKY+ PK++ +A    +      FFY+INY ++K
Sbjct:    61 WWRWQHKYVFPKRAGIAPFFQLTVASMTFFYLINYTKLK 99

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS

GO:0015992 "proton transport" evidence=ISS

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISS

GO:0005811 "lipid particle" evidence=IDA

GO:0046331 "lateral inhibition" evidence=IMP

WB|WBGene00011273 R53.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 32/92 (34%), Positives = 44/92 (47%)

Query:     4 GDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWR 63
             G +   +   VHGPY   RYYGK DT    VKLG+L +W  RR  +P A      R  WR
Sbjct:    47 GLFDKRWNKNVHGPYCHWRYYGKLDTKFMDVKLGDLPAWMARREKTPSAFYNEFMRNIWR 106

Query:    64 WNHKYILPKKSNMAGTLHVLFGLSLFFYVINY 95
              ++ Y      N   T+ V+F     +  +N+
Sbjct:   107 VHNLYYSGPVYN--NTVKVIFRFIFAYSFLNW 136

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

UNIPROTKB|P56134 ATP5J2 "ATP synthase subunit f, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 29/72 (40%), Positives = 42/72 (58%)

Query:    28 DTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLS 87
             D  L +VKLGEL SW   R++SP  +  A  R ++R+ +KYI  KK +++G   VL    
Sbjct:    15 DKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGITMVLACYV 74

Query:    88 LFFYVINYPRIK 99
             LF Y  +Y  +K
Sbjct:    75 LFSYSFSYKHLK 86

GO:0016021 "integral to membrane" evidence=IEA

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA;NAS

GO:0015992 "proton transport" evidence=NAS

GO:0016887 "ATPase activity" evidence=IDA

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IC;TAS

GO:0022857 "transmembrane transporter activity" evidence=IC

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0006200 "ATP catabolic process" evidence=IDA

UNIPROTKB|Q5R6T5 ATP5J2 "ATP synthase subunit f, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 29/72 (40%), Positives = 42/72 (58%)

Query:    28 DTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLS 87
             D  L +VKLGEL SW   R++SP  +  A  R ++R+ +KYI  KK +++G   VL    
Sbjct:    15 DKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGITMVLACYV 74

Query:    88 LFFYVINYPRIK 99
             LF Y  +Y  +K
Sbjct:    75 LFSYSFSYKHLK 86

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

UNIPROTKB|Q95339 ATP5J2 "ATP synthase subunit f, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 27/72 (37%), Positives = 42/72 (58%)

Query:    28 DTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLS 87
             D  L +VKLGEL SW   R+++P  +  A  R ++R+ +KY+  KK ++AG   VL    
Sbjct:     9 DRRLLEVKLGELPSWILMRDFTPSGIAGAFQRGYYRYYNKYVNVKKGSVAGLSMVLAAYV 68

Query:    88 LFFYVINYPRIK 99
             +F Y  +Y  +K
Sbjct:    69 VFNYCRSYKELK 80

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

MGI|MGI:1927558 Atp5j2 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2" [Mus musculus (taxid:10090)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 26/69 (37%), Positives = 41/69 (59%)

Query:    31 LGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLSLFF 90
             L +VKLGEL SW   R+++P  +  A  R + R+ +KYI  +K +++G   VL    +F 
Sbjct:    12 LMEVKLGELPSWIMMRDFTPSGIAGAFRRGYDRYYNKYINVRKGSISGISMVLAAYVVFS 71

Query:    91 YVINYPRIK 99
             Y I+Y  +K
Sbjct:    72 YCISYKELK 80

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=ISO

UNIPROTKB|Q28851 ATP5J2 "ATP synthase subunit f, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 24/67 (35%), Positives = 38/67 (56%)

Query:    33 QVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLSLFFYV 92
             +VKLGEL SW   R+++P  +  A  R ++R+ +KY+  KK ++AG   VL       Y 
Sbjct:    14 EVKLGELPSWILMRDFTPSGIAGAFQRGYYRYYNKYVNVKKGSIAGLSMVLAAYVFLNYC 73

Query:    93 INYPRIK 99
              +Y  +K
Sbjct:    74 RSYKELK 80

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0016887 "ATPase activity" evidence=IEA

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

UNIPROTKB|F1NHF1 F1NHF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 23/72 (31%), Positives = 39/72 (54%)

Query:    28 DTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLS 87
             D  L  VK+G+L +W   R+++P  +  A  R + R+ +KYI  +K  + G   VL G  
Sbjct:    15 DMKLLDVKVGQLSTWLAMRDFTPSGIVGAFRRGYDRYYNKYINVRKGGLGGISMVLAGYV 74

Query:    88 LFFYVINYPRIK 99
             +  Y+ +Y  +K
Sbjct:    75 VLSYIWSYSHLK 86

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

RGD|1596067 Atp5j2 "ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2" [Rattus norvegicus (taxid:10116)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 25/69 (36%), Positives = 40/69 (57%)

Query:    31 LGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTLHVLFGLSLFF 90
             L +VKL EL SW   R+++P  +  A  R + R+ +KYI  +K +++G   VL    +F 
Sbjct:    12 LMEVKLRELPSWILMRDFTPSGIAGAFRRGYDRYYNKYINVRKGSISGINMVLAAYVVFS 71

Query:    91 YVINYPRIK 99
             Y I+Y  +K
Sbjct:    72 YCISYKELK 80


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.143   0.482    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      102       102   0.00091  102 3  11 22  0.39    30
                                                     29  0.48    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  555 (59 KB)
  Total size of DFA:  132 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.44u 0.09s 10.53t   Elapsed:  00:00:06
  Total cpu time:  10.44u 0.09s 10.53t   Elapsed:  00:00:06
  Start:  Thu Aug 15 12:07:36 2013   End:  Thu Aug 15 12:07:42 2013

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISO;IDA

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IDA

GO:0016887 "ATPase activity" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P56135	ATPK_MOUSE	No assigned EC number	0.3611	0.7058	0.8181	yes	N/A
P56134	ATPK_HUMAN	No assigned EC number	0.4027	0.7058	0.7659	yes	N/A
Q9W141	ATPK_DROME	No assigned EC number	0.5959	0.9705	0.9252	yes	N/A
Q95339	ATPK_PIG	No assigned EC number	0.375	0.7058	0.8181	yes	N/A
Q5R6T5	ATPK_PONAB	No assigned EC number	0.4027	0.7058	0.7659	yes	N/A
Q28851	ATPK_BOVIN	No assigned EC number	0.3472	0.7058	0.8181	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	102
pfam10206	104	pfam10206, WRW, Mitochondrial F1F0-ATP synthase, s	4e-46

>gnl|CDD|150822 pfam10206, WRW, Mitochondrial F1F0-ATP synthase, subunit f

 Score =  143 bits (362), Expect = 4e-46
 Identities = 65/99 (65%), Positives = 77/99 (77%)

Query: 1  MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRA 60
          M  GDYPAEY P+VHGPYDPARYYGKPDTPLG VKLGELG+WFGRR+ SP A+  A SRA
Sbjct: 1  MAIGDYPAEYNPKVHGPYDPARYYGKPDTPLGDVKLGELGAWFGRRDKSPSAIAGAFSRA 60

Query: 61 FWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYPRIK 99
          +WRW +KY+L K+  +A    VL G  +FFY INY ++K
Sbjct: 61 YWRWQNKYVLVKRGGIAPIFQVLVGYMVFFYAINYDKLK 99

This is a family of small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans. Some members of the family have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
PF10206	104	WRW: Mitochondrial F1F0-ATP synthase, subunit f; I	100.0
KOG4092|consensus	108		100.0
PF10791	95	F1F0-ATPsyn_F: Mitochondrial F1-F0 ATP synthase su	97.7

>PF10206 WRW: Mitochondrial F1F0-ATP synthase, subunit f; InterPro: IPR019344 This entry represents small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans

Probab=100.00  E-value=8.1e-66  Score=358.91  Aligned_cols=101  Identities=57%  Similarity=1.067  Sum_probs=100.1

Q ss_pred             CCCCCCCCccCCCCcCCCCCCccccCCCCCccceeecCcCccccccCCCHHHHHHHHHHHHHhhhcccccccCCCcchHH
Q psy15621          1 MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYILPKKSNMAGTL   80 (102)
Q Consensus         1 ~~~g~~p~eyn~~~hgpy~p~r~ygk~d~~l~dvKL~ElPsWl~~r~~sP~~~~~av~Rg~~ry~~KYi~~Kk~gi~pi~   80 (102)
                      |+|||||+||||+|||||||+||||||||||+||||+|||+||+|||+||+++++||||+||||+||||+|||+||+||+
T Consensus         1 m~~G~~p~eyn~~vhGpy~p~ryYGk~Dt~l~dVKLgELpsW~~rRd~sP~~~~~a~sR~~wry~~KYi~~Kr~gia~~~   80 (104)
T PF10206_consen    1 MAFGDYPKEYNPKVHGPYDPARYYGKKDTPLMDVKLGELPSWLSRRDKSPSGIAGAFSRGYWRYQHKYINVKRGGIAPFF   80 (104)
T ss_pred             CCcCCCchhhCccccCCCCchhhcCCCCCchhheecchhHHHHhhccCCHHHHHHHHHHHHHHHHHhhhceecCCcchhH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhccCccccc
Q psy15621         81 HVLFGLSLFFYVINYPRIKLF  101 (102)
Q Consensus        81 ~v~~g~~v~~Y~~sy~hlK~~  101 (102)
                      ||++|+|+|||+|||+||||.
T Consensus        81 ~v~~g~~~~~Y~~~Y~~lkh~  101 (104)
T PF10206_consen   81 QVLAGYMVFSYCINYKHLKHH  101 (104)
T ss_pred             HHHHHHHHHHHHHhhcHhhhc
Confidence            999999999999999999985

Some have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known.

>KOG4092|consensus

Probab=100.00  E-value=4.7e-54  Score=298.21  Aligned_cols=101  Identities=41%  Similarity=0.733  Sum_probs=98.1

Q ss_pred             CCCCCCCCccCCCCcCCCCCCccccCCCCCccceeecCcCccccccCCCHHHHHHHHHHHHHhhhccccc-ccCCCcchH
Q psy15621          1 MGFGDYPAEYKPQVHGPYDPARYYGKPDTPLGQVKLGELGSWFGRRNYSPRAMTAATSRAFWRWNHKYIL-PKKSNMAGT   79 (102)
Q Consensus         1 ~~~g~~p~eyn~~~hgpy~p~r~ygk~d~~l~dvKL~ElPsWl~~r~~sP~~~~~av~Rg~~ry~~KYi~-~Kk~gi~pi   79 (102)
                      |.+|+||+||||+|||||||||||||+|++|+||||||||+|+.|||+||+++.+||||+||||+|||++ +|+++|+||
T Consensus         1 te~G~f~kr~N~~vhgpycpar~yGk~D~kf~~VKLGelpaW~~rR~ktPsa~~gaf~R~~wR~~nkY~~Pv~~gsi~~i   80 (108)
T KOG4092|consen    1 TEVGLFDKRWNKMVHGPYCPARVYGKKDKKFLEVKLGELPAWILRRDKTPSAIFGAFQRGYWRYYNKYINPVKKGSISGI   80 (108)
T ss_pred             CccccchhhhCcCCCCCCCCccccccccceeeeeeecccHHHHHhccCChHHHHHHHHHHHHHHHhheechhhcCchhHH
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999 566679999


Q ss_pred             HHHHHHHHhhhhhhccCccccc
Q psy15621         80 LHVLFGLSLFFYVINYPRIKLF  101 (102)
Q Consensus        80 ~~v~~g~~v~~Y~~sy~hlK~~  101 (102)
                      +|+++++|+|||++||.||||+
T Consensus        81 f~~~~ay~~f~yl~~y~~lkh~  102 (108)
T KOG4092|consen   81 FMVLAAYVLFSYLFSYKHLKHE  102 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999996

>PF10791 F1F0-ATPsyn_F: Mitochondrial F1-F0 ATP synthase subunit F of fungi; InterPro: IPR019727 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.70  E-value=2.4e-05  Score=54.25  Aligned_cols=39  Identities=31%  Similarity=0.444  Sum_probs=36.5

Q ss_pred             HHhhhcccccccCCCcchHHHHHHHHHhhhhhhccC-ccc
Q psy15621         61 FWRWNHKYILPKKSNMAGTLHVLFGLSLFFYVINYP-RIK   99 (102)
Q Consensus        61 ~~ry~~KYi~~Kk~gi~pi~~v~~g~~v~~Y~~sy~-hlK   99 (102)
                      +=||+.||.+-|+.+.+|+.|++++.+++.|+++|- |||
T Consensus        56 ~grYkakYFdGkNaSgkPllHli~~l~~iGYs~eYyfHLr   95 (95)
T PF10791_consen   56 LGRYKAKYFDGKNASGKPLLHLIGGLFLIGYSIEYYFHLR   95 (95)
T ss_pred             HHHHHHHHcCCCCCccccHHHHHHHHHHHHHHHHhHhhcC
Confidence            568999999999999999999999999999999987 775

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F found in the F0 complex of F-ATPases from fungal mitochondria. The membrane bound F1-FO-type H+ ATP synthase of mitochondria catalyses the terminal step in oxidative respiration converting the generation of the electrochemical gradient into ATP for cellular biosynthesis. The general structure and the core subunits of the enzyme are highly conserved in both prokaryotic and eukaryotic organisms.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00