Psyllid ID: psy15672

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKPENMVAS
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccEEEHHHHcHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHEcccccEEccccccEcHHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHEcccccEEccccccEcHHHHHHHHHHHHHcccccccccccHHHHHHHcEcccccEcccccccccHHHHHHHHHHHHHHccHHHccHHHHHHHHHHcEccccccEEccccccEcccHHHHcccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHEcccccEcccccccccc
Coil and Loop (DISEMBL)
msrvgncldaSRAWICYWICHSlslldeplssadkSCVVNFLsqcqspnggfgggpgqdphIAATYAAVNCLIIlgtpeayncinrpKLKQFLQRlkapdggfhvhdggevdIRGVYCALCVALLTQVYSEDLFNNTREWLTACQtyeggfsgypgfeahggytfCGFAALCLLKSEHLCDIKALLRWTTNRQmnfeggfqgrtnkLVDGCYSFWQGGLFPLIYRSLMKagdtcldghwlFHHRALQEYILICCQhfngglldkpenmvas
Flexible Loop (DISEMBL)
MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGglldkpenmvas
Low Complexity Region (SEG)
MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNggfgggpgQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKPENMVAS
Disordered region (IsUnstruct)
*****NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGG**GQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLL*********
Disordered Region (DISOPRED)
*SRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLL**P******
Disordered Region (DISEMBL)
MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKPENMVAS
Disordered Region (DISPRO)
*SRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLD********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKPENMVAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	271	2.2.26 [Sep-21-2011]
Q8K2I1	437	Protein farnesyltransfera	yes	N/A	0.959	0.594	0.639	4e-90
Q02293	437	Protein farnesyltransfera	yes	N/A	0.959	0.594	0.639	5e-90
P49355	437	Protein farnesyltransfera	yes	N/A	0.959	0.594	0.636	8e-90
P49356	437	Protein farnesyltransfera	yes	N/A	0.959	0.594	0.636	2e-89
Q04903	419	Protein farnesyltransfera	N/A	N/A	0.955	0.618	0.439	1e-67
Q38920	482	Protein farnesyltransfera	yes	N/A	0.808	0.454	0.490	2e-54
O13782	382	Protein farnesyltransfera	yes	N/A	0.948	0.672	0.446	8e-52
Q55D51	500	Protein farnesyltransfera	yes	N/A	0.944	0.512	0.385	5e-51
P22007	431	Protein farnesyltransfera	yes	N/A	0.918	0.577	0.437	2e-45
B0G172	339	Probable geranylgeranyl t	no	N/A	0.797	0.637	0.348	2e-28

>sp|Q8K2I1|FNTB_MOUSE Protein farnesyltransferase subunit beta OS=Mus musculus GN=Fntb PE=1 SV=1

 Score =  331 bits (848), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 167/261 (63%), Positives = 192/261 (73%), Gaps = 1/261 (0%)

Query: 6   NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAAT 65
            CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP+GGFGGGPGQ PH+A T
Sbjct: 94  ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 153

Query: 66  YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
           YAAVN L I+GT EAYN INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA L
Sbjct: 154 YAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 213

Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
           T + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 273

Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
           L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 333

Query: 245 ALQEYILICCQHFNGGLLDKP 265
           ALQEYIL+CCQ   GGLLDKP
Sbjct: 334 ALQEYILMCCQCPAGGLLDKP 354

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 8

>sp|Q02293|FNTB_RAT Protein farnesyltransferase subunit beta OS=Rattus norvegicus GN=Fntb PE=1 SV=1

 Score =  330 bits (847), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 167/261 (63%), Positives = 192/261 (73%), Gaps = 1/261 (0%)

Query: 6   NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAAT 65
            CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP+GGFGGGPGQ PH+A T
Sbjct: 94  ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 153

Query: 66  YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
           YAAVN L I+GT EAYN INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA L
Sbjct: 154 YAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 213

Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
           T + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 273

Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
           L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 333

Query: 245 ALQEYILICCQHFNGGLLDKP 265
           ALQEYIL+CCQ   GGLLDKP
Sbjct: 334 ALQEYILMCCQCPAGGLLDKP 354

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 8

>sp|P49355|FNTB_BOVIN Protein farnesyltransferase subunit beta OS=Bos taurus GN=FNTB PE=2 SV=1

 Score =  330 bits (845), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 166/261 (63%), Positives = 191/261 (73%), Gaps = 1/261 (0%)

Query: 6   NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAAT 65
            CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP GGFGGGPGQ PH+A T
Sbjct: 94  ECLDASRPWLCYWILHSLELLDEPIPQMVATDVCQFLELCQSPEGGFGGGPGQYPHLAPT 153

Query: 66  YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
           YAAVN L I+GT EAY+ INR KL Q+L  LK PDG F +HDGGEVD+R  YCA  VA L
Sbjct: 154 YAAVNALCIIGTEEAYDVINREKLLQYLYSLKQPDGSFLMHDGGEVDVRSAYCAASVASL 213

Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
           T + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 273

Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
           L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L    W+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSRWMFHQQ 333

Query: 245 ALQEYILICCQHFNGGLLDKP 265
           ALQEYIL+CCQ   GGLLDKP
Sbjct: 334 ALQEYILMCCQCPTGGLLDKP 354

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 8

>sp|P49356|FNTB_HUMAN Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB PE=1 SV=1

 Score =  328 bits (842), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 166/261 (63%), Positives = 191/261 (73%), Gaps = 1/261 (0%)

Query: 6   NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAAT 65
            CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP GGFGGGPGQ PH+A T
Sbjct: 94  ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPT 153

Query: 66  YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
           YAAVN L I+GT EAY+ INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA L
Sbjct: 154 YAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 213

Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
           T + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSL 273

Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
           L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 333

Query: 245 ALQEYILICCQHFNGGLLDKP 265
           ALQEYIL+CCQ   GGLLDKP
Sbjct: 334 ALQEYILMCCQCPAGGLLDKP 354

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 8

>sp|Q04903|FNTB_PEA Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB PE=2 SV=1

 Score =  256 bits (654), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 138/314 (43%), Positives = 175/314 (55%), Gaps = 55/314 (17%)

Query: 6   NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAAT 65
           N     R W+CYWI HS++LL E +    +   V+FL++CQ PNGG+ GGPGQ PH+A T
Sbjct: 39  NAQSIIRPWLCYWIIHSIALLGESIDDDLEDNTVDFLNRCQDPNGGYAGGPGQMPHLATT 98

Query: 66  YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
           YAAVN LI LG  ++   INR KL  F++R+K P+GGF +HD GE+D+R  Y A+ VA +
Sbjct: 99  YAAVNTLITLGGEKSLASINRNKLYGFMRRMKQPNGGFRMHDEGEIDVRACYTAISVASV 158

Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
             +  ++L  N  +++ +CQTYEGG +G PG EAHGGYTFCG AA+ L+   +  D+  L
Sbjct: 159 LNILDDELIKNVGDFILSCQTYEGGLAGEPGSEAHGGYTFCGLAAMILIGEVNRLDLPRL 218

Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYR------------------SL 227
           L W   RQ   E GFQGRTNKLVDGCYSFWQGG   L+ R                  S 
Sbjct: 219 LDWVVFRQGK-ECGFQGRTNKLVDGCYSFWQGGAVALLQRLHSIIDEQMAEASQFVTVSD 277

Query: 228 MKAGDTCLDG-------------------------------HW-----LFHHRALQEYIL 251
                 CLDG                                W     LFH  ALQ+YIL
Sbjct: 278 APEEKECLDGTSSHATSHIRHEGMNESCSSDVKNIGYNFISEWRQSEPLFHSIALQQYIL 337

Query: 252 ICCQHFNGGLLDKP 265
           +C Q  +GGL DKP
Sbjct: 338 LCSQEQDGGLRDKP 351

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.

Pisum sativum (taxid: 3888)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 8

>sp|Q38920|FNTB_ARATH Protein farnesyltransferase subunit beta OS=Arabidopsis thaliana GN=FTB PE=1 SV=3

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/220 (49%), Positives = 148/220 (67%), Gaps = 1/220 (0%)

Query: 6   NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAAT 65
           + LDA+R W+CYWI HS++LL E +    +S  ++FL +CQ   GG+GGGPGQ PH+A T
Sbjct: 102 SSLDANRPWLCYWILHSIALLGETVDDELESNAIDFLGRCQGSEGGYGGGPGQLPHLATT 161

Query: 66  YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
           YAAVN L+ LG  +A + INR K+  FL+R+K   GGF +HD GE+D+R  Y A+ VA +
Sbjct: 162 YAAVNALVTLGGDKALSSINREKMSCFLRRMKDTSGGFRMHDMGEMDVRACYTAISVASI 221

Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
             +  ++L     +++ +CQTYEGG  G PG EAHGGYT+CG AA+ L+      ++ +L
Sbjct: 222 LNIMDDELTQGLGDYILSCQTYEGGIGGEPGSEAHGGYTYCGLAAMILINEVDRLNLDSL 281

Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYR 225
           + W  +RQ   E GFQGRTNKLVDGCY+FWQ     L+ R
Sbjct: 282 MNWAVHRQ-GVEMGFQGRTNKLVDGCYTFWQAAPCVLLQR 320

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 8

>sp|O13782|FNTB_SCHPO Protein farnesyltransferase subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1

 Score =  203 bits (517), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 117/262 (44%), Positives = 157/262 (59%), Gaps = 5/262 (1%)

Query: 6   NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAAT 65
             LDASRAW+ YW   SL++L + L S+     ++ + Q + P+GGF GG GQD H+ +T
Sbjct: 50  TVLDASRAWMVYWELSSLAILGK-LDSSVCERAISSVRQLKGPSGGFCGGNGQDEHLLST 108

Query: 66  YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
           YA++  + +  + +AY+ I R +L  +L  LK PDG F V++ GE D R VY A+CV+ L
Sbjct: 109 YASILSICLCDSTDAYSLIERDRLYDWLFSLKNPDGSFRVNNEGESDARSVYAAVCVSSL 168

Query: 126 TQVYSED-LFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKS-EHLCDIK 183
             +  +D LF  T +WL  CQTYEGG SG P  EAHGGYTFC  AA+ LL   ++L +IK
Sbjct: 169 VGISMDDPLFEGTLQWLCKCQTYEGGLSGVPYAEAHGGYTFCALAAIALLGGLDNLNEIK 228

Query: 184 ALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHH 243
            L  W   RQ     GF GR+NKLVDGCYS+W G    ++      A    L  +  ++ 
Sbjct: 229 -LSTWLVQRQDPALYGFSGRSNKLVDGCYSWWVGASHVIVASGYGSASHKSLP-NLFYNP 286

Query: 244 RALQEYILICCQHFNGGLLDKP 265
             L  YIL CCQ  +GGL DKP
Sbjct: 287 EKLLGYILQCCQSTSGGLRDKP 308

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 8

>sp|Q55D51|FNTB_DICDI Protein farnesyltransferase subunit beta OS=Dictyostelium discoideum GN=fntB PE=3 SV=1

 Score =  201 bits (511), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 111/288 (38%), Positives = 156/288 (54%), Gaps = 32/288 (11%)

Query: 8   LDASRAWICYWICHSLSLLDE----PLSSADKSCVVNFLSQCQSPNGGFGGGP------- 56
           LD+S+ WI +WI + + +LD     P  S+  S  ++ L    +                
Sbjct: 79  LDSSKVWISFWILNGMDMLDSLDSYPNISSRASKYLSILQNDDNNGNNNNRENNQNGGGF 138

Query: 57  ----GQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVD 112
                   H+ +T+AAV+ L ++GT E+Y  I+R  + +FL R+K  +G F   DGGE D
Sbjct: 139 GGGNSHTSHVVSTFAAVSALYVIGTEESYKTIDREAMYKFLMRMKTKEGAFTSEDGGEYD 198

Query: 113 IRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALC 172
            R  YCA+ VA +  + + +L     ++L +CQTYEGGF  YP  EAHGGYTFC  AAL 
Sbjct: 199 SRTTYCAIAVASMLNILTAELERGVVDFLLSCQTYEGGFGAYPFNEAHGGYTFCSVAALS 258

Query: 173 LLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLI------YRS 226
           +L S H  D+ +L RW T RQ N +GGF+GRTNKLVD CYS+WQG ++ +I      Y+ 
Sbjct: 259 ILNSLHKIDMNSLHRWITYRQSN-DGGFEGRTNKLVDTCYSYWQGAVYIIIQSYFNYYKK 317

Query: 227 LM------KAGDTCLDGHWLFHHRALQEYILICCQHFN---GGLLDKP 265
                   K GD   +G  LF+   LQEY++  CQ  +    G  D P
Sbjct: 318 QQQDDGDGKEGDQQEEG-LLFNQAKLQEYVIRFCQQSDKKYSGFSDHP 364

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 8

>sp|P22007|FNTB_YEAST Protein farnesyltransferase subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAM1 PE=1 SV=2

 Score =  182 bits (462), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/263 (43%), Positives = 155/263 (58%), Gaps = 14/263 (5%)

Query: 8   LDASRAWICYWICHSLSLLDEP-LSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATY 66
           LDAS+ W+ YWI +SL ++D   LS   K  +V+ L       G FGGGPGQ  H+A+TY
Sbjct: 102 LDASQPWMLYWIANSLKVMDRDWLSDDTKRKIVDKLFTISPSGGPFGGGPGQLSHLASTY 161

Query: 67  AAVNCLIILGTPEA-YNCINRPKLKQFLQRLKAPDGGFHV-HDGGEVDIRGVYCALCVAL 124
           AA+N L +    +  ++ I+R  + Q+L  LK P+GGF    + GEVD RG+YCAL +A 
Sbjct: 162 AAINALSLCDNIDGCWDRIDRKGIYQWLISLKEPNGGFKTCLEVGEVDTRGIYCALSIAT 221

Query: 125 LTQVYSEDLFNNTREWLTACQTYEGGFSGYPGF-EAHGGYTFCGFAALCLLKSEHLCDIK 183
           L  + +E+L      +L  CQ YEGGF   P   EAHGGYTFC  A+L +L+S    +++
Sbjct: 222 LLNILTEELTEGVLNYLKNCQNYEGGFGSCPHVDEAHGGYTFCATASLAILRSMDQINVE 281

Query: 184 ALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHH 243
            LL W++ RQ+  E GF GR+NKLVDGCYSFW GG   ++                 F+ 
Sbjct: 282 KLLEWSSARQLQEERGFCGRSNKLVDGCYSFWVGGSAAIL---------EAFGYGQCFNK 332

Query: 244 RALQEYILICCQHFNG-GLLDKP 265
            AL++YIL CCQ     GL DKP
Sbjct: 333 HALRDYILYCCQEKEQPGLRDKP 355

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins such as a-factor and RAS. The beta subunit is responsible for peptide-binding.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 8

>sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/238 (34%), Positives = 119/238 (50%), Gaps = 22/238 (9%)

Query: 34  DKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFL 93
           DK+ V+ +L  CQ  NGGFGG    D H+ +T +AV  LI     +A + I+   +  ++
Sbjct: 71  DKNEVIQWLLSCQKSNGGFGGNTSHDDHLLSTLSAVQILI---QYDALDKIDINSVVDYV 127

Query: 94  QRLKAPDGGFHVHDGGEVDIRGVYCA-LCVALLTQVYSEDLFN--NTREWLTACQTYEGG 150
            +L+  DG F     GEVD R  Y A +C++LL    S D  N     E++ +CQ ++GG
Sbjct: 128 VKLQREDGSFVGDQWGEVDTRFSYAAIMCLSLLK---SLDKINCEKAVEYILSCQNFDGG 184

Query: 151 FSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDG 210
           F   PG E+H G  F    AL +L   +  DI  L  W + RQ+   GG  GR  K  D 
Sbjct: 185 FGSIPGAESHAGQIFTCVGALSILNEINKIDIDKLGWWLSERQLP-NGGLNGRPEKSSDV 243

Query: 211 CYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKPENM 268
           CYS+W       I R            HW+ + + L+ YIL C  +  GG+ DKP ++
Sbjct: 244 CYSWWVLSALSAIDRL-----------HWIDNDK-LKSYILKCQDNETGGIADKPGDI 289

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
291231044	410	PREDICTED: farnesyltransferase, CAAX box	0.977	0.646	0.635	1e-99
427785243	418	Putative beta subunit of farnesyltransfe	0.952	0.617	0.640	1e-94
47224369	405	unnamed protein product [Tetraodon nigro	0.977	0.654	0.627	2e-94
443714900	405	hypothetical protein CAPTEDRAFT_168477 [	0.977	0.654	0.624	3e-94
242046504	330	protein farnesyltransferase beta subunit	0.952	0.781	0.640	6e-94
332373710	399	unknown [Dendroctonus ponderosae]	0.970	0.659	0.615	2e-93
348517729	434	PREDICTED: protein farnesyltransferase s	0.977	0.610	0.616	7e-93
410916819	427	PREDICTED: protein farnesyltransferase s	0.977	0.620	0.612	2e-92
432944926	430	PREDICTED: protein farnesyltransferase s	0.977	0.616	0.605	7e-92
110645712	414	farnesyltransferase, CAAX box, beta [Xen	0.977	0.640	0.605	7e-92

>gi|291231044|ref|XP_002735484.1| PREDICTED: farnesyltransferase, CAAX box, beta-like [Saccoglossus kowalevskii]

 Score =  368 bits (945), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 169/266 (63%), Positives = 205/266 (77%), Gaps = 1/266 (0%)

Query: 1   MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDP 60
           +S    CLDASR W+CYWI HSL LL E +S    S VV FL +CQ P+GGF GGPGQ P
Sbjct: 74  LSESYECLDASRPWLCYWILHSLYLLGEQISEEQSSRVVQFLKRCQDPDGGFAGGPGQCP 133

Query: 61  HIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCAL 120
           H+A TYAA++ L  LG+ EAY+ I+RPKL+QFL R+K P+GGF +HDGGE+DIRG YCA 
Sbjct: 134 HLAPTYAAISALCTLGSQEAYDIIDRPKLQQFLLRMKTPEGGFMMHDGGEIDIRGAYCAA 193

Query: 121 CVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLC 180
             A LT V +++LF  + EW+++CQTYEGGFSG PG EAHGGY+FCG+AAL +L  E LC
Sbjct: 194 VSASLTNVATKELFEGSSEWISSCQTYEGGFSGMPGMEAHGGYSFCGYAALVILGRERLC 253

Query: 181 DIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDG-HW 239
           D K+LLRWT +RQM FEGGFQGRTNKLVDGCYS WQ G+ PL++  L K GD  L G +W
Sbjct: 254 DTKSLLRWTVSRQMRFEGGFQGRTNKLVDGCYSLWQAGVLPLLHMVLSKQGDKTLSGDNW 313

Query: 240 LFHHRALQEYILICCQHFNGGLLDKP 265
           +F   ALQEY+LICCQHF+GGL+DKP
Sbjct: 314 MFDQGALQEYVLICCQHFSGGLIDKP 339

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|427785243|gb|JAA58073.1| Putative beta subunit of farnesyltransferase [Rhipicephalus pulchellus]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 166/259 (64%), Positives = 190/259 (73%), Gaps = 1/259 (0%)

Query: 8   LDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYA 67
           LDASR W+CYWI HSL LL+  L S  K+ + NFL +CQ P GGF GGPGQ+ H+A TYA
Sbjct: 87  LDASRPWLCYWILHSLELLEVTLYSEMKTSIANFLGKCQHPEGGFSGGPGQEAHLAPTYA 146

Query: 68  AVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQ 127
           AVN L ILGT EAY  INR  L  FL+R+K PDG F +H+GGE D+RG YCAL VA LT 
Sbjct: 147 AVNALSILGTEEAYKVINRKTLYSFLRRMKQPDGSFIMHEGGEADVRGAYCALSVAKLTN 206

Query: 128 VYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLR 187
            ++  LF  T EW+  CQTYEGGF G PG EAHGGYTFCGFAAL  L+ E LC++K LLR
Sbjct: 207 TFTPSLFEGTAEWVIKCQTYEGGFGGVPGMEAHGGYTFCGFAALVFLEREMLCNLKKLLR 266

Query: 188 WTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGH-WLFHHRAL 246
           W  NRQM FEGGFQGRTNKLVDGCYS WQGG FPL+++ L   G+  L    WLF   AL
Sbjct: 267 WLVNRQMRFEGGFQGRTNKLVDGCYSLWQGGAFPLLHKVLFSLGNESLSMESWLFDQDAL 326

Query: 247 QEYILICCQHFNGGLLDKP 265
           QEYIL+CCQ  +GGLLDKP
Sbjct: 327 QEYILLCCQDPSGGLLDKP 345

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|47224369|emb|CAG09215.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 167/266 (62%), Positives = 196/266 (73%), Gaps = 1/266 (0%)

Query: 1   MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDP 60
           +S    CLDASR W+C+WI HSL LL+EP+ SA  S V  FL++CQSP GGF GGPGQ  
Sbjct: 74  LSDAYECLDASRPWLCFWILHSLELLEEPIPSAVASDVCQFLARCQSPTGGFAGGPGQHA 133

Query: 61  HIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCAL 120
           H+A TYAAVN L I+GT EAYN I+R KL  FL  +K PDG F +H GGEVD+R  YCA 
Sbjct: 134 HLAPTYAAVNALCIIGTEEAYNVIDRQKLSDFLWSVKQPDGSFVMHVGGEVDVRSAYCAA 193

Query: 121 CVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLC 180
            VA LT + +  LF NT  W+ +CQ +EGG SG PG EAHGGYTFCG AAL +L  EH+ 
Sbjct: 194 SVASLTNIITPKLFENTTNWILSCQNWEGGLSGVPGLEAHGGYTFCGTAALVILGKEHML 253

Query: 181 DIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGH-W 239
           D+KALLRW  +RQM FEGGFQGR NKLVDGCYSFWQ GL PLI+R+L K G+T L    W
Sbjct: 254 DLKALLRWVVSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLIHRALFKEGETELSQQRW 313

Query: 240 LFHHRALQEYILICCQHFNGGLLDKP 265
           +F  +ALQEYIL+CCQ+  GGLLDKP
Sbjct: 314 MFEQQALQEYILLCCQNPTGGLLDKP 339

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|443714900|gb|ELU07098.1| hypothetical protein CAPTEDRAFT_168477 [Capitella teleta]

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 166/266 (62%), Positives = 196/266 (73%), Gaps = 1/266 (0%)

Query: 1   MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDP 60
           +S    CLDASR W+CYWI HSL LL   L     S V  FL++CQ P+GGF GGPGQ  
Sbjct: 73  LSESYECLDASRPWLCYWILHSLELLSIDLPEGMASQVAQFLAKCQCPDGGFAGGPGQLA 132

Query: 61  HIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCAL 120
           H+A TYAAVN L I+GT EA+  I+RP L+++L R++ P+G F +H+GGEVDIRG YCA 
Sbjct: 133 HLAPTYAAVNALCIIGTDEAFKVIDRPALQRYLLRMRTPEGAFKMHEGGEVDIRGAYCAA 192

Query: 121 CVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLC 180
             A LT V ++ +F+ T EW+ +CQTYEGGF+G PG EAHGGY+FCG AAL LL  E LC
Sbjct: 193 SAARLTNVATKAMFDGTAEWVVSCQTYEGGFAGEPGLEAHGGYSFCGLAALVLLGHERLC 252

Query: 181 DIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDG-HW 239
           DI ALLRWT NRQM FEGGFQGRTNKLVDGCYSFWQGG FPL++  L K  D  L    W
Sbjct: 253 DISALLRWTANRQMAFEGGFQGRTNKLVDGCYSFWQGGAFPLMHMILSKEKDDTLSADSW 312

Query: 240 LFHHRALQEYILICCQHFNGGLLDKP 265
           +FH  ALQEY+LICCQH  GGL+DKP
Sbjct: 313 MFHQGALQEYLLICCQHQGGGLIDKP 338

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|242046504|ref|XP_002399627.1| protein farnesyltransferase beta subunit, putative [Ixodes scapularis] gi|215497558|gb|EEC07052.1| protein farnesyltransferase beta subunit, putative [Ixodes scapularis]

 Score =  349 bits (896), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 166/259 (64%), Positives = 195/259 (75%), Gaps = 1/259 (0%)

Query: 8   LDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYA 67
           LDASR W+CYWI HSL LLD  + +  KS + +FL +CQ P GGF GGPGQ  H+A TYA
Sbjct: 26  LDASRPWLCYWILHSLELLDTSIYAEMKSSIADFLGRCQHPEGGFCGGPGQQAHLAPTYA 85

Query: 68  AVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQ 127
           AVN L ILGT EAY+ I+R KL  FL+R+K PDG F +H+GGE D+RG YCAL VA LT 
Sbjct: 86  AVNALCILGTEEAYSVIDRKKLYSFLKRVKQPDGSFIMHEGGESDVRGTYCALAVAKLTN 145

Query: 128 VYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLR 187
           +++  LF  T EW+  CQTYEGGF G PG EAHGGYTFCG+AAL LL+ E  CD+K LLR
Sbjct: 146 IWTASLFEGTAEWVAKCQTYEGGFGGVPGMEAHGGYTFCGYAALVLLERETCCDLKKLLR 205

Query: 188 WTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGH-WLFHHRAL 246
           W TNRQM FEGGFQGRTNKLVDGCYSFWQGG+FPL+++ L   G+  L    WLF   AL
Sbjct: 206 WLTNRQMRFEGGFQGRTNKLVDGCYSFWQGGVFPLLHKVLFAMGNDALSMESWLFDQDAL 265

Query: 247 QEYILICCQHFNGGLLDKP 265
           QEYIL+CCQ  +GGL+DKP
Sbjct: 266 QEYILVCCQDKHGGLVDKP 284

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373710|gb|AEE61996.1| unknown [Dendroctonus ponderosae]

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 163/265 (61%), Positives = 194/265 (73%), Gaps = 2/265 (0%)

Query: 1   MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDP 60
           +S     LDASR WICYW+ H L+L+    +   KS +V FL++CQSP+GGF GGPGQ P
Sbjct: 75  ISSKYEILDASRTWICYWLLHPLTLMGVKFNDGLKSDIVQFLAKCQSPSGGFAGGPGQYP 134

Query: 61  HIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCAL 120
           H+A TYAAVN L+I+GT EAY  INR  L +FLQ LK PDG F +H GGE+DIRG YCA+
Sbjct: 135 HLAPTYAAVNALVIVGTEEAYKIINRKALYEFLQSLKQPDGSFAMHIGGEIDIRGAYCAI 194

Query: 121 CVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLC 180
            VA +T + + +L +NT EW+ +CQTYEGGF+G PG EAHGGY FCG AAL +L   HLC
Sbjct: 195 AVASITDIITRELVSNTAEWIVSCQTYEGGFAGGPGLEAHGGYAFCGLAALVILNKGHLC 254

Query: 181 DIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWL 240
           D +ALLRW  ++QM  EGGFQGRTNKLVD CYSFWQGG FPL+Y  L K G  C     L
Sbjct: 255 DNRALLRWLVHKQMPLEGGFQGRTNKLVDSCYSFWQGGAFPLLYTLLAKEG--CAPKRHL 312

Query: 241 FHHRALQEYILICCQHFNGGLLDKP 265
           F  RALQEYILICCQ+  GGL+DKP
Sbjct: 313 FDERALQEYILICCQYSQGGLIDKP 337

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348517729|ref|XP_003446385.1| PREDICTED: protein farnesyltransferase subunit beta-like [Oreochromis niloticus]

 Score =  346 bits (887), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 164/266 (61%), Positives = 195/266 (73%), Gaps = 1/266 (0%)

Query: 1   MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDP 60
           +S    CLDASR W+C+WI HSL LL EP+ +A  S V  FL++CQSP GGF GGPGQ  
Sbjct: 74  LSDAYECLDASRPWLCFWILHSLELLQEPIPAAVASDVCQFLARCQSPTGGFAGGPGQHA 133

Query: 61  HIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCAL 120
           H+A TYAAVN L I+GT EAYN I+R KL  FL  +K PDG F +H GGEVD+R  YCA 
Sbjct: 134 HLAPTYAAVNALCIIGTDEAYNVIDREKLLDFLWSVKQPDGSFVMHVGGEVDVRSAYCAA 193

Query: 121 CVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLC 180
            VA LT + +  LF NT  W+ +CQ +EGG SG PG EAHGGYTFCG AAL +L  EH+ 
Sbjct: 194 SVASLTNILTPKLFENTTNWILSCQNWEGGLSGVPGLEAHGGYTFCGTAALVILGKEHML 253

Query: 181 DIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGH-W 239
           D+KALLRW  +RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L K G++ L    W
Sbjct: 254 DLKALLRWVVSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALYKEGESELSQQRW 313

Query: 240 LFHHRALQEYILICCQHFNGGLLDKP 265
           +F  +ALQEYIL+CCQ+  GGLLDKP
Sbjct: 314 MFEQQALQEYILLCCQNPTGGLLDKP 339

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410916819|ref|XP_003971884.1| PREDICTED: protein farnesyltransferase subunit beta-like [Takifugu rubripes]

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 163/266 (61%), Positives = 194/266 (72%), Gaps = 1/266 (0%)

Query: 1   MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDP 60
           +S    CLDASR W+C+WI HSL LL+EP+  A  S V  FL++CQSP GGF GGPGQ  
Sbjct: 74  LSDAYECLDASRPWLCFWILHSLELLEEPIPPAVASDVCQFLARCQSPTGGFAGGPGQHA 133

Query: 61  HIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCAL 120
           H+A TYAAVN L I+GT EAYN I+R KL  FL  +K PDG F +H GGEVD+R  YCA 
Sbjct: 134 HLAPTYAAVNALCIIGTEEAYNVIDRQKLLDFLWSVKQPDGSFMMHVGGEVDVRSAYCAA 193

Query: 121 CVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLC 180
            VA LT + +  LF NT  W+ +CQ +EGG SG PG EAHGGY+FCG AAL +L  EH+ 
Sbjct: 194 SVASLTYILTPKLFENTTNWILSCQNWEGGLSGVPGLEAHGGYSFCGTAALVILGKEHML 253

Query: 181 DIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGH-W 239
           D+K+LLRW  +RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L K G++ L    W
Sbjct: 254 DLKSLLRWVVSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALFKEGESELSQQRW 313

Query: 240 LFHHRALQEYILICCQHFNGGLLDKP 265
           LF  +ALQEYIL+CCQ   GGLLDKP
Sbjct: 314 LFEQQALQEYILLCCQSPTGGLLDKP 339

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432944926|ref|XP_004083455.1| PREDICTED: protein farnesyltransferase subunit beta-like [Oryzias latipes]

 Score =  342 bits (878), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 161/266 (60%), Positives = 195/266 (73%), Gaps = 1/266 (0%)

Query: 1   MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDP 60
           +S    CLDASR W+C+WI HSL LL+EP+ +   S V  FL++CQSP GGF GGPGQ  
Sbjct: 74  LSDAYECLDASRPWLCFWILHSLELLEEPVPATVASDVCQFLARCQSPTGGFAGGPGQYA 133

Query: 61  HIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCAL 120
           H+A TYAAVN L I+GT EAY+ I+R KL  FL  LK PDG F +H GGEVD+R  YCA 
Sbjct: 134 HLAPTYAAVNALCIIGTEEAYSVIDREKLLDFLWSLKQPDGSFMMHVGGEVDVRSAYCAA 193

Query: 121 CVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLC 180
            VA LT + +  LF +T  W+  CQ +EGG SG PG EAHGGYTFCG AAL +L +EH+ 
Sbjct: 194 SVASLTNILTPKLFEDTTNWILRCQNWEGGLSGVPGLEAHGGYTFCGTAALVILGNEHML 253

Query: 181 DIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHW 239
           D+KALLRW  +RQM FEGGFQGR NKLVDGCYSFWQ G+ PL++R+L K G++ L    W
Sbjct: 254 DLKALLRWVVSRQMRFEGGFQGRCNKLVDGCYSFWQAGVLPLLHRALFKEGESELSRNQW 313

Query: 240 LFHHRALQEYILICCQHFNGGLLDKP 265
           +F  +ALQEYIL+CCQ+  GGLLDKP
Sbjct: 314 MFEQKALQEYILLCCQNPTGGLLDKP 339

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|110645712|gb|AAI18705.1| farnesyltransferase, CAAX box, beta [Xenopus (Silurana) tropicalis]

 Score =  342 bits (878), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 161/266 (60%), Positives = 197/266 (74%), Gaps = 1/266 (0%)

Query: 1   MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDP 60
           +S    CLD+SR W+CYWI HS+ LLDEP+  +  S V  FL++CQ PNGGF GGPGQ P
Sbjct: 74  LSDSYECLDSSRPWLCYWIVHSMGLLDEPIPESLASDVCQFLTRCQDPNGGFCGGPGQQP 133

Query: 61  HIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCAL 120
           H+A T+AAVN L  +GT EA++ INR KL  FL  LK PDG F +H GGEVD+R  YCA 
Sbjct: 134 HLAPTFAAVNALCTIGTEEAFDVINREKLLAFLWSLKQPDGSFTMHIGGEVDVRSAYCAA 193

Query: 121 CVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLC 180
            VA LT + + +LF+ T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +L+  HL 
Sbjct: 194 SVASLTNIMTTELFDGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGVAALVILQRVHLL 253

Query: 181 DIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHW 239
           D+++LLRW T RQM FEGGFQGR NKLVDGCYSFWQGGL PL++R+L   GD+ ++  +W
Sbjct: 254 DLRSLLRWVTCRQMRFEGGFQGRCNKLVDGCYSFWQGGLLPLLHRTLHAEGDSAINLANW 313

Query: 240 LFHHRALQEYILICCQHFNGGLLDKP 265
           +F  +ALQEYIL+CCQ  NGGLLDKP
Sbjct: 314 MFDQQALQEYILLCCQCPNGGLLDKP 339

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
MGI|MGI:1861305	437	Fntb "farnesyltransferase, CAA	0.955	0.592	0.611	9.9e-87
RGD|620119	437	Fntb "farnesyltransferase, CAA	0.955	0.592	0.611	9.9e-87
UNIPROTKB|Q02293	437	Fntb "Protein farnesyltransfer	0.955	0.592	0.611	9.9e-87
UNIPROTKB|P49355	437	FNTB "Protein farnesyltransfer	0.955	0.592	0.607	2e-86
ZFIN|ZDB-GENE-030131-2220	419	fntb "farnesyltransferase, CAA	0.977	0.632	0.593	2e-86
UNIPROTKB|F1Q0W7	437	FNTB "Uncharacterized protein"	0.955	0.592	0.607	4.3e-86
UNIPROTKB|B4DL54	471	CHURC1-FNTB "cDNA FLJ59570, hi	0.955	0.549	0.607	5.4e-86
UNIPROTKB|B4E1A0	391	CHURC1-FNTB "cDNA FLJ58825, hi	0.955	0.662	0.607	5.4e-86
UNIPROTKB|H0YHI0	472	CHURC1-FNTB "Protein CHURC1-FN	0.955	0.548	0.607	5.4e-86
UNIPROTKB|P49356	437	FNTB "Protein farnesyltransfer	0.955	0.592	0.607	5.4e-86

MGI|MGI:1861305 Fntb "farnesyltransferase, CAAX box, beta" [Mus musculus (taxid:10090)]

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 159/260 (61%), Positives = 184/260 (70%)

Query:     7 CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAATY 66
             CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP+        Q PH+A TY
Sbjct:    95 CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTY 154

Query:    67 AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLT 126
             AAVN L I+GT EAYN INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA LT
Sbjct:   155 AAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLT 214

Query:   127 QVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
              + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+LL
Sbjct:   215 NIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLL 274

Query:   187 RWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHRA 245
             +W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +A
Sbjct:   275 QWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQA 334

Query:   246 LQEYILICCQHFNGGLLDKP 265
             LQEYIL+CCQ   GGLLDKP
Sbjct:   335 LQEYILMCCQCPAGGLLDKP 354

GO:0003824 "catalytic activity" evidence=IEA

GO:0004311 "farnesyltranstransferase activity" evidence=IMP

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0004660 "protein farnesyltransferase activity" evidence=ISO

GO:0005875 "microtubule associated complex" evidence=ISO

GO:0005965 "protein farnesyltransferase complex" evidence=IEA

GO:0008144 "drug binding" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA;IMP

GO:0008270 "zinc ion binding" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO;IMP

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0010035 "response to inorganic substance" evidence=ISO

GO:0014070 "response to organic cyclic compound" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0018343 "protein farnesylation" evidence=ISO

GO:0019840 "isoprenoid binding" evidence=ISO

GO:0034097 "response to cytokine stimulus" evidence=ISO

GO:0042060 "wound healing" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0042277 "peptide binding" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045787 "positive regulation of cell cycle" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IMP

GO:0051770 "positive regulation of nitric-oxide synthase biosynthetic process" evidence=ISO

RGD|620119 Fntb "farnesyltransferase, CAAX box, beta" [Rattus norvegicus (taxid:10116)]

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 159/260 (61%), Positives = 184/260 (70%)

Query:     7 CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAATY 66
             CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP+        Q PH+A TY
Sbjct:    95 CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTY 154

Query:    67 AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLT 126
             AAVN L I+GT EAYN INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA LT
Sbjct:   155 AAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLT 214

Query:   127 QVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
              + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+LL
Sbjct:   215 NIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLL 274

Query:   187 RWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHRA 245
             +W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +A
Sbjct:   275 QWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQA 334

Query:   246 LQEYILICCQHFNGGLLDKP 265
             LQEYIL+CCQ   GGLLDKP
Sbjct:   335 LQEYILMCCQCPAGGLLDKP 354

GO:0004311 "farnesyltranstransferase activity" evidence=IEA;ISO

GO:0004660 "protein farnesyltransferase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005875 "microtubule associated complex" evidence=ISO

GO:0005965 "protein farnesyltransferase complex" evidence=IEA

GO:0008152 "metabolic process" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO;IMP

GO:0008285 "negative regulation of cell proliferation" evidence=IEA;ISO

GO:0010035 "response to inorganic substance" evidence=IMP

GO:0014070 "response to organic cyclic compound" evidence=IMP

GO:0018343 "protein farnesylation" evidence=IEA;ISO

GO:0034097 "response to cytokine stimulus" evidence=IMP

GO:0042060 "wound healing" evidence=IEA;ISO

GO:0043234 "protein complex" evidence=IDA

GO:0045787 "positive regulation of cell cycle" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IEA;ISO

GO:0051770 "positive regulation of nitric-oxide synthase biosynthetic process" evidence=IMP

GO:0008144 "drug binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0019840 "isoprenoid binding" evidence=IDA

GO:0042277 "peptide binding" evidence=IDA

UNIPROTKB|Q02293 Fntb "Protein farnesyltransferase subunit beta" [Rattus norvegicus (taxid:10116)]

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 159/260 (61%), Positives = 184/260 (70%)

Query:     7 CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAATY 66
             CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP+        Q PH+A TY
Sbjct:    95 CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTY 154

Query:    67 AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLT 126
             AAVN L I+GT EAYN INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA LT
Sbjct:   155 AAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLT 214

Query:   127 QVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
              + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+LL
Sbjct:   215 NIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLL 274

Query:   187 RWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHRA 245
             +W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +A
Sbjct:   275 QWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQA 334

Query:   246 LQEYILICCQHFNGGLLDKP 265
             LQEYIL+CCQ   GGLLDKP
Sbjct:   335 LQEYILMCCQCPAGGLLDKP 354

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P49355 FNTB "Protein farnesyltransferase subunit beta" [Bos taurus (taxid:9913)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 158/260 (60%), Positives = 183/260 (70%)

Query:     7 CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAATY 66
             CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP         Q PH+A TY
Sbjct:    95 CLDASRPWLCYWILHSLELLDEPIPQMVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTY 154

Query:    67 AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLT 126
             AAVN L I+GT EAY+ INR KL Q+L  LK PDG F +HDGGEVD+R  YCA  VA LT
Sbjct:   155 AAVNALCIIGTEEAYDVINREKLLQYLYSLKQPDGSFLMHDGGEVDVRSAYCAASVASLT 214

Query:   127 QVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
              + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+LL
Sbjct:   215 NIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLL 274

Query:   187 RWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHRA 245
             +W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L    W+FH +A
Sbjct:   275 QWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSRWMFHQQA 334

Query:   246 LQEYILICCQHFNGGLLDKP 265
             LQEYIL+CCQ   GGLLDKP
Sbjct:   335 LQEYILMCCQCPTGGLLDKP 354

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IEA

GO:0042060 "wound healing" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0004311 "farnesyltranstransferase activity" evidence=IEA

GO:0004660 "protein farnesyltransferase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0018343 "protein farnesylation" evidence=IEA

GO:0005965 "protein farnesyltransferase complex" evidence=IEA

ZFIN|ZDB-GENE-030131-2220 fntb "farnesyltransferase, CAAX box, beta" [Danio rerio (taxid:7955)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 158/266 (59%), Positives = 188/266 (70%)

Query:     1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDP 60
             +S    CLDASR W+CYWI HSL LL+EP+ +A  S V  FL++CQ+P         Q  
Sbjct:    74 LSDAYECLDASRPWLCYWILHSLELLEEPVPAAVASDVCQFLARCQAPTGGFGGGPGQQA 133

Query:    61 HIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCAL 120
             H+A TYAAVN L ILGT EAYN INR  L  FL  +K PDG F +H GGEVD+R  YCA 
Sbjct:   134 HLAPTYAAVNALCILGTEEAYNVINRETLLDFLYSVKQPDGSFVMHIGGEVDVRSAYCAA 193

Query:   121 CVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLC 180
              VA LT + +  LF+ T  W+ +CQ +EGG  G PG EAHGGYTFCG AAL +L  EH+ 
Sbjct:   194 SVASLTNIIAPTLFDGTHNWIISCQNWEGGLGGVPGLEAHGGYTFCGTAALVILGKEHML 253

Query:   181 DIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHW 239
             D+KALLRW T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L K GD+ L    W
Sbjct:   254 DLKALLRWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALFKEGDSTLSVSSW 313

Query:   240 LFHHRALQEYILICCQHFNGGLLDKP 265
             +F  +ALQEYIL+CCQ+  GGLLDKP
Sbjct:   314 MFERKALQEYILLCCQNPGGGLLDKP 339

GO:0003824 "catalytic activity" evidence=IEA

GO:0018343 "protein farnesylation" evidence=IEA

GO:0005965 "protein farnesyltransferase complex" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|F1Q0W7 FNTB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 158/260 (60%), Positives = 182/260 (70%)

Query:     7 CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAATY 66
             CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP         Q PH+A TY
Sbjct:    95 CLDASRPWLCYWILHSLELLDEPIPQMVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTY 154

Query:    67 AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLT 126
             AAVN L I+GT EAY  INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA LT
Sbjct:   155 AAVNALCIIGTEEAYGVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLT 214

Query:   127 QVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
              + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+LL
Sbjct:   215 NIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERYLNLKSLL 274

Query:   187 RWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHRA 245
             +W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +A
Sbjct:   275 QWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQA 334

Query:   246 LQEYILICCQHFNGGLLDKP 265
             LQEYIL+CCQ   GGLLDKP
Sbjct:   335 LQEYILMCCQCPAGGLLDKP 354

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IEA

GO:0042060 "wound healing" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0004311 "farnesyltranstransferase activity" evidence=IEA

GO:0018343 "protein farnesylation" evidence=IEA

GO:0005965 "protein farnesyltransferase complex" evidence=IEA

UNIPROTKB|B4DL54 CHURC1-FNTB "cDNA FLJ59570, highly similar to Protein farnesyltransferase subunit beta (EC 2.5.1.58)" [Homo sapiens (taxid:9606)]

 Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
 Identities = 158/260 (60%), Positives = 183/260 (70%)

Query:     7 CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAATY 66
             CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP         Q PH+A TY
Sbjct:   129 CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTY 188

Query:    67 AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLT 126
             AAVN L I+GT EAY+ INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA LT
Sbjct:   189 AAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLT 248

Query:   127 QVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
              + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+LL
Sbjct:   249 NIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLL 308

Query:   187 RWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHRA 245
             +W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +A
Sbjct:   309 QWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQA 368

Query:   246 LQEYILICCQHFNGGLLDKP 265
             LQEYIL+CCQ   GGLLDKP
Sbjct:   369 LQEYILMCCQCPAGGLLDKP 388

GO:0005965 "protein farnesyltransferase complex" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018343 "protein farnesylation" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|B4E1A0 CHURC1-FNTB "cDNA FLJ58825, highly similar to Protein farnesyltransferase subunit beta (EC 2.5.1.58)" [Homo sapiens (taxid:9606)]

 Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
 Identities = 158/260 (60%), Positives = 183/260 (70%)

Query:     7 CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAATY 66
             CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP         Q PH+A TY
Sbjct:    49 CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTY 108

Query:    67 AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLT 126
             AAVN L I+GT EAY+ INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA LT
Sbjct:   109 AAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLT 168

Query:   127 QVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
              + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+LL
Sbjct:   169 NIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLL 228

Query:   187 RWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHRA 245
             +W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +A
Sbjct:   229 QWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQA 288

Query:   246 LQEYILICCQHFNGGLLDKP 265
             LQEYIL+CCQ   GGLLDKP
Sbjct:   289 LQEYILMCCQCPAGGLLDKP 308

GO:0005965 "protein farnesyltransferase complex" evidence=IEA

GO:0018343 "protein farnesylation" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|H0YHI0 CHURC1-FNTB "Protein CHURC1-FNTB" [Homo sapiens (taxid:9606)]

 Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
 Identities = 158/260 (60%), Positives = 183/260 (70%)

Query:     7 CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAATY 66
             CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP         Q PH+A TY
Sbjct:   130 CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTY 189

Query:    67 AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLT 126
             AAVN L I+GT EAY+ INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA LT
Sbjct:   190 AAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLT 249

Query:   127 QVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
              + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+LL
Sbjct:   250 NIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLL 309

Query:   187 RWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHRA 245
             +W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +A
Sbjct:   310 QWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQA 369

Query:   246 LQEYILICCQHFNGGLLDKP 265
             LQEYIL+CCQ   GGLLDKP
Sbjct:   370 LQEYILMCCQCPAGGLLDKP 389

GO:0003824 "catalytic activity" evidence=IEA

GO:0005965 "protein farnesyltransferase complex" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018343 "protein farnesylation" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|P49356 FNTB "Protein farnesyltransferase subunit beta" [Homo sapiens (taxid:9606)]

 Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
 Identities = 158/260 (60%), Positives = 183/260 (70%)

Query:     7 CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAATY 66
             CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP         Q PH+A TY
Sbjct:    95 CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTY 154

Query:    67 AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLT 126
             AAVN L I+GT EAY+ INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA LT
Sbjct:   155 AAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLT 214

Query:   127 QVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
              + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+LL
Sbjct:   215 NIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLL 274

Query:   187 RWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHRA 245
             +W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +A
Sbjct:   275 QWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQA 334

Query:   246 LQEYILICCQHFNGGLLDKP 265
             LQEYIL+CCQ   GGLLDKP
Sbjct:   335 LQEYILMCCQCPAGGLLDKP 354

GO:0005965 "protein farnesyltransferase complex" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0018343 "protein farnesylation" evidence=IDA

GO:0004660 "protein farnesyltransferase activity" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O13782	FNTB_SCHPO	2, ., 5, ., 1, ., 5, 8	0.4465	0.9483	0.6727	yes	N/A
P49355	FNTB_BOVIN	2, ., 5, ., 1, ., 5, 8	0.6360	0.9594	0.5949	yes	N/A
P49356	FNTB_HUMAN	2, ., 5, ., 1, ., 5, 8	0.6360	0.9594	0.5949	yes	N/A
Q02293	FNTB_RAT	2, ., 5, ., 1, ., 5, 8	0.6398	0.9594	0.5949	yes	N/A
Q8K2I1	FNTB_MOUSE	2, ., 5, ., 1, ., 5, 8	0.6398	0.9594	0.5949	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.58	0.824
3rd Layer	2.5.1	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	271
cd02893	299	cd02893, FTase, Protein farnesyltransferase (FTase	1e-147
cd02890	286	cd02890, PTase, Protein prenyltransferase (PTase)	1e-114
PLN02710	439	PLN02710, PLN02710, farnesyltranstransferase subun	1e-103
COG5029	342	COG5029, CAL1, Prenyltransferase, beta subunit [Po	8e-79
cd00688	300	cd00688, ISOPREN_C2_like, This group contains clas	3e-52
cd02895	307	cd02895, GGTase-I, Geranylgeranyltransferase types	8e-52
cd02894	287	cd02894, GGTase-II, Geranylgeranyltransferase type	2e-49
PLN03201	316	PLN03201, PLN03201, RAB geranylgeranyl transferase	4e-40
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	4e-18
cd00688	300	cd00688, ISOPREN_C2_like, This group contains clas	9e-16
cd02894	287	cd02894, GGTase-II, Geranylgeranyltransferase type	2e-13
COG5029	342	COG5029, CAL1, Prenyltransferase, beta subunit [Po	1e-10
cd02895	307	cd02895, GGTase-I, Geranylgeranyltransferase types	4e-10
PLN03201	316	PLN03201, PLN03201, RAB geranylgeranyl transferase	9e-10
pfam00432	44	pfam00432, Prenyltrans, Prenyltransferase and squa	4e-09
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	1e-07
pfam00432	44	pfam00432, Prenyltrans, Prenyltransferase and squa	4e-07
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	8e-05
pfam00432	44	pfam00432, Prenyltrans, Prenyltransferase and squa	1e-04
pfam00432	44	pfam00432, Prenyltrans, Prenyltransferase and squa	4e-04

>gnl|CDD|239223 cd02893, FTase, Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  414 bits (1067), Expect = e-147
 Identities = 149/260 (57%), Positives = 178/260 (68%), Gaps = 1/260 (0%)

Query: 7   CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATY 66
            LDASR W+ YWI HSL LL E L  +    V++FL +CQ+P+GGFGGGPGQ PH+A TY
Sbjct: 21  SLDASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLATTY 80

Query: 67  AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLT 126
           AAVN L I+GT EAY+ I+R  L +FL  LK PDG F +H GGEVD+RG YCA+ VA L 
Sbjct: 81  AAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLL 140

Query: 127 QVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
            + +++LF    E++ +CQTYEGGF G PG EAHGGYTFC  AAL +L      D+++LL
Sbjct: 141 NILTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLL 200

Query: 187 RWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHRA 245
           RW   RQM FEGGFQGRTNKLVDGCYSFW GG  P++   L             LF   A
Sbjct: 201 RWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEA 260

Query: 246 LQEYILICCQHFNGGLLDKP 265
           LQEYIL+CCQ   GGL DKP
Sbjct: 261 LQEYILLCCQSEEGGLRDKP 280

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular processes including Ras/mitogen activated protein kinase signaling pathways in mammals and, abscisic acid signal transduction in Arabidopsis. Length = 299

>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  330 bits (848), Expect = e-114
 Identities = 123/264 (46%), Positives = 154/264 (58%), Gaps = 14/264 (5%)

Query: 7   CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQ-SPNGGFGGGPGQDPHIAAT 65
            LDASR W+ YWI  SL LL E L   +K  +++F+  CQ + +GGFGGGPGQDPH+A+T
Sbjct: 21  SLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLAST 80

Query: 66  YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
           YAAV  L ILG  +A + I+R K+ +FL  L+ PDG F    GGEVD R VYCAL +  L
Sbjct: 81  YAAVLSLAILGD-DALSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSL 139

Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
             + ++       +++ +CQ Y+GGF G PG E+HGGYTFC  A+L LL    L D + L
Sbjct: 140 LNILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERL 199

Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRA 245
           LRW   RQ+   GGF GR NKLVD CYSFW G    +            L    L     
Sbjct: 200 LRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKI------------LGRLHLIDQEK 247

Query: 246 LQEYILICCQHFNGGLLDKPENMV 269
           L+EYIL C Q   GG  DKP    
Sbjct: 248 LREYILSCQQSEVGGFSDKPGKPP 271

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTase-II does not recognize its protein acceptor directly but requires Rab to complex with REP (Rab escort protein) before prenylation can occur. These enzymes are found exclusively in eukaryotes. Length = 286

>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta

 Score =  306 bits (785), Expect = e-103
 Identities = 141/305 (46%), Positives = 179/305 (58%), Gaps = 48/305 (15%)

Query: 8   LDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYA 67
           LDA+R W+CYWI HS++LL E L    ++  ++FLS+CQ PNGG+GGGPGQ PH+A TYA
Sbjct: 67  LDANRPWLCYWILHSIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYA 126

Query: 68  AVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQ 127
           AVN L+ +G   A + INR KL  FL R+K P GGF +HDGGE+D+R  Y A+ VA L  
Sbjct: 127 AVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLN 186

Query: 128 VYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLR 187
           +  ++L     +++ +CQTYEGG  G PG EAHGGYTFCG AA+ L+      D+ +L+ 
Sbjct: 187 ILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLIN 246

Query: 188 WTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYR--------------SLMK---A 230
           W   RQ   EGGFQGRTNKLVDGCYSFWQGG+F L+ +              S+M     
Sbjct: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIMFEELE 305

Query: 231 GDTCLDGHW------------------------------LFHHRALQEYILICCQHFNGG 260
            D C                                   LFH  ALQ+YIL+C Q  +GG
Sbjct: 306 DDACETSSSGKDDAGDTDSADYSKVGFDFIKASNQQMGPLFHSIALQQYILLCSQVLDGG 365

Query: 261 LLDKP 265
           L DKP
Sbjct: 366 LRDKP 370

Length = 439

>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

 Score =  241 bits (617), Expect = 8e-79
 Identities = 104/261 (39%), Positives = 142/261 (54%), Gaps = 14/261 (5%)

Query: 8   LDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYA 67
           L+ASR    YW  +SL +L     + DK   ++F+  C  P+GGFGGGPGQD H+A+T  
Sbjct: 50  LEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFVLGCVGPSGGFGGGPGQDSHLASTVF 109

Query: 68  AVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQ 127
           A+  L +L + +  + I+R  L  F+  LK PDG F     GEVD R +Y AL +  L  
Sbjct: 110 AIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLG 169

Query: 128 VYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKS-EHLCDIKALL 186
              ++LF    ++L  CQ YEGGF   P  EAH GYTFC  AAL LL   + L D++ L+
Sbjct: 170 DLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLI 229

Query: 187 RWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRAL 246
           RW   RQ++  GG  GR+NKLVD CYSFW      ++ +         ++         L
Sbjct: 230 RWLAERQLS-SGGLNGRSNKLVDTCYSFWVLSSLAILGKLD------FINTE------EL 276

Query: 247 QEYILICCQHFNGGLLDKPEN 267
            +YIL C Q  +GG  D+P  
Sbjct: 277 TDYILDCQQETSGGFSDRPGE 297

Length = 342

>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

 Score =  171 bits (436), Expect = 3e-52
 Identities = 85/280 (30%), Positives = 115/280 (41%), Gaps = 30/280 (10%)

Query: 7   CLDASRAWICYWICHSLSLLDEPLSSADKSC-----VVNFLSQCQSPNGGFGGGPGQD-P 60
            L   + W   W   +L LL       DK+       +  L   Q  +GGF G  G D P
Sbjct: 21  SLCGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDYP 80

Query: 61  HIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHD-------GGEVDI 113
            +  T  A+  L++ G   A + I+  +   +L  L+  DGGF           G E D+
Sbjct: 81  SLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDV 140

Query: 114 RGVYCALCVALLTQVYSED-LFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALC 172
           R    AL    L      D L     ++L +CQ Y+GGF   PG E+HG  T C  AAL 
Sbjct: 141 RLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGFG--PGGESHGYGTACAAAALA 198

Query: 173 LLKSEHLCDIKALLRWTTNRQMNFEGGFQGR--TNKLVDGCYSFWQGGLFPLIYRSLMKA 230
           LL      D K  LRW  +RQ    G  +GR  TNKL D CY+ W          +L+  
Sbjct: 199 LLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAY-------ALLAL 251

Query: 231 GDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKPENMVA 270
           G        L     L ++ L+  Q+ +GG   KP     
Sbjct: 252 G----KLGDLEDAEKLVKW-LLSQQNEDGGFSSKPGKSYD 286

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. Length = 300

>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  170 bits (434), Expect = 8e-52
 Identities = 87/277 (31%), Positives = 128/277 (46%), Gaps = 39/277 (14%)

Query: 8   LDASRAWICYWICHSLSLLDEP--LSSADKSCVVNFLSQCQS----PNGGFGGGPG---- 57
           LD +R  I ++    L LL     +   +K  ++ ++   Q     P GGF G       
Sbjct: 22  LDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLP 81

Query: 58  ------QDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGF---HVHDG 108
                    ++A TY A+  L+ILG   +   ++R  +  FL +L+ PDG F      +G
Sbjct: 82  GTASKYDTGNLAMTYFALLSLLILGDDLSR--VDRKAILNFLSKLQLPDGSFGSVLDSEG 139

Query: 109 GEVDIRGVYCALCVALLTQVYSEDLFNNTR--EWLTACQTYEGGFSGYPGFEAHGGYTFC 166
           GE D+R  YCA+ +  +   +SE+  +  +  +++ + Q+Y+GGF   PG E+HGG TFC
Sbjct: 140 GENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFC 199

Query: 167 GFAALCLLKSEHLCDIK---ALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLI 223
             A+L LL        K    L RW  +RQ++   GF GR NK  D CYSFW G      
Sbjct: 200 AIASLSLLGKLEELSEKFLERLKRWLVHRQVS-GTGFNGRPNKPADTCYSFWVGA----- 253

Query: 224 YRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGG 260
             SL       LD   L      + Y+L   Q   GG
Sbjct: 254 --SLK-----LLDAFQLIDFEKNRNYLLSTQQSLVGG 283

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. Length = 307

>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  164 bits (418), Expect = 2e-49
 Identities = 92/257 (35%), Positives = 130/257 (50%), Gaps = 22/257 (8%)

Query: 17  YWICHSLSLLDEPLSSADKSCVVNFLSQCQSPN-GGFGGGPGQDPHIAATYAAVNCLIIL 75
           YW   +L LL +     ++  ++ F+  CQ    GGFGG PG DPHI +T +A+  L + 
Sbjct: 34  YWGLTALDLLGQL-ERLNREEIIEFVKSCQDNEDGGFGGSPGHDPHILSTLSAIQILALY 92

Query: 76  GTPEAYNCINRPKLK--QFLQRLKAPDGGFHVHDGGEVDIRGVYCAL-CVALLTQVYSED 132
              +  N I+  K K  +F++ L+  DG F     GEVD R  YCA+ C+ LL ++   D
Sbjct: 93  ---DLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLID 149

Query: 133 LFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNR 192
           + +   ++L +C  ++GGF   PG E+H G  FC   AL +L S  L D   L  W   R
Sbjct: 150 V-DKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCER 208

Query: 193 QMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILI 252
           Q+   GG  GR  KL D CYS+W       +  SL   G      HW  +   L+ +IL 
Sbjct: 209 QLP-SGGLNGRPEKLPDVCYSWW-------VLSSLKIIGRL----HW-INKNKLKNFILA 255

Query: 253 CCQHFNGGLLDKPENMV 269
           C    +GG  D+P NMV
Sbjct: 256 CQDEEDGGFADRPGNMV 272

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTas-II requires an escort protein to bring the substrate protein to the catalytic heterodimer and to escort the geryanylgeranylated product to the membrane. Length = 287

>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional

 Score =  140 bits (356), Expect = 4e-40
 Identities = 86/253 (33%), Positives = 126/253 (49%), Gaps = 17/253 (6%)

Query: 17  YWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILG 76
           YW   +L LL   L   D+  VV+++ +CQ  +GGFGG  G DPHI  T +AV    IL 
Sbjct: 41  YWGLTALDLLG-KLDDVDRDEVVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQ---ILA 96

Query: 77  TPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNN 136
             +  + ++  K+  ++  L+  DG F   + GE+D R  YCALC   L +   +     
Sbjct: 97  LFDRLDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEK 156

Query: 137 TREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNF 196
             +++ +C+ ++GGF   PG E+H G  FC   AL +  S H  D   L  W   RQ+  
Sbjct: 157 AVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVK- 215

Query: 197 EGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQH 256
            GG  GR  KL D CYS+W       +  SL+         HW+     L ++IL C   
Sbjct: 216 SGGLNGRPEKLPDVCYSWW-------VLSSLIIIDRV----HWI-DKDKLAKFILDCQDD 263

Query: 257 FNGGLLDKPENMV 269
            NGG+ D+P++ V
Sbjct: 264 ENGGISDRPDDAV 276

Length = 316

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 77.4 bits (191), Expect = 4e-18
 Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 7/116 (6%)

Query: 39  VNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKA 98
           V++L   Q+P+GG+G   G    +A T  A+  L  LG        +  K   +L   + 
Sbjct: 1   VDYLLSQQNPDGGWGAAVGGGSDVAMTALALLALAALGETP-----DVKKALAWLLSQQN 55

Query: 99  PDGGFH-VHDGGEVDIRGVYCALCVALLTQVYSEDLF-NNTREWLTACQTYEGGFS 152
           PDGGF         D+     AL    L     +D       ++L +CQ  +GGF 
Sbjct: 56  PDGGFGYDPQSNSPDLSSTAYALAALELLGGEPDDEAVEKAVDYLLSCQNPDGGFG 111

Length = 112

>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

 Score = 75.3 bits (185), Expect = 9e-16
 Identities = 44/170 (25%), Positives = 67/170 (39%), Gaps = 9/170 (5%)

Query: 9   DASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAA 68
           D S   +  +   +L+LL +          +++L  CQ+ +GGFG  PG + H   T  A
Sbjct: 136 DESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGFG--PGGESHGYGTACA 193

Query: 69  VNCLIILGTPEAYNCINRPKLKQFL-QRLKAPDGGFHVHDGGEVDIRGVYCALCV-ALLT 126
              L +LG     +  +  K  ++L  R +   G     D         Y      ALL 
Sbjct: 194 AAALALLG---DLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLA 250

Query: 127 QVYSEDLFNNTR--EWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLL 174
                DL +  +  +WL + Q  +GGFS  PG      +T     AL L 
Sbjct: 251 LGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQHTVFALLALSLY 300

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. Length = 300

>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 7/179 (3%)

Query: 38  VVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLK 97
           +  F+   Q+ +G F G    +     +Y AV CL +LG     + I+  K   +L    
Sbjct: 105 IAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLG---KLDLIDVDKAVDYLLSCY 161

Query: 98  APDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTR--EWLTACQTYEGGFSGYP 155
             DGGF    G E     ++C  CV  L  + S DL +  R   WL   Q   GG +G P
Sbjct: 162 NFDGGFGCRPGAESHAGQIFC--CVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRP 219

Query: 156 GFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSF 214
                  Y++   ++L ++   H  +   L  +    Q   +GGF  R   +VD  ++F
Sbjct: 220 EKLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTF 278

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTas-II requires an escort protein to bring the substrate protein to the catalytic heterodimer and to escort the geryanylgeranylated product to the membrane. Length = 287

>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 48/171 (28%), Positives = 73/171 (42%), Gaps = 8/171 (4%)

Query: 15  ICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLII 74
             Y     LSLL + L        V++L +CQ+  GGFG  P  + H   T+ A+  L +
Sbjct: 157 FLYIALSILSLLGD-LDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALAL 215

Query: 75  LGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLF 134
           LG  +  +  +  KL ++L   +   GG +      VD    Y    ++ L  +   D  
Sbjct: 216 LGKLDKLS--DVEKLIRWLAERQLSSGGLNGRSNKLVD--TCYSFWVLSSLAILGKLDFI 271

Query: 135 NN---TREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDI 182
           N    T   L   Q   GGFS  PG E    +T  G A L L++ ++L  +
Sbjct: 272 NTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSLIEYKYLNPV 322

Length = 342

>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 58.8 bits (143), Expect = 4e-10
 Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 6/163 (3%)

Query: 16  CYWICHSLSLLDEPLSSA-DKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLII 74
           CY       +LD+      DK  +++++   QS +GGFG GPG + H  +T+ A+  L +
Sbjct: 147 CYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSL 206

Query: 75  LGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVA---LLTQVYSE 131
           LG  E  +     +LK++L   +    GF+       D    Y     A   LL      
Sbjct: 207 LGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADT--CYSFWVGASLKLLDAFQLI 264

Query: 132 DLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLL 174
           D   N    L+  Q+  GGF+  P       +++ G AAL L+
Sbjct: 265 DFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAALSLI 307

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. Length = 307

>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional

 Score = 57.8 bits (140), Expect = 9e-10
 Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 14/192 (7%)

Query: 23  LSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYN 82
           L+L D  L   D   V ++++  Q+ +G F G    +     +Y A+ CL +L   +   
Sbjct: 95  LALFDR-LDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLD--- 150

Query: 83  CINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYS-----EDLFNNT 137
            IN  K   ++   K  DGGF    GGE     ++C  CV  L    S     +DL    
Sbjct: 151 KINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFC--CVGALAITGSLHHVDKDLLG-- 206

Query: 138 REWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFE 197
             WL   Q   GG +G P       Y++   ++L ++   H  D   L ++  + Q +  
Sbjct: 207 -WWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVHWIDKDKLAKFILDCQDDEN 265

Query: 198 GGFQGRTNKLVD 209
           GG   R +  VD
Sbjct: 266 GGISDRPDDAVD 277

Length = 316

>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat

 Score = 51.0 bits (123), Expect = 4e-09
 Identities = 20/43 (46%), Positives = 28/43 (65%)

Query: 34 DKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILG 76
          DK  +V++L  CQ+P+GGFGG PG +     TY A+  L +LG
Sbjct: 2  DKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALLG 44

Length = 44

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 9   DASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGP-GQDPHIAATYA 67
             S   +      +L+ L E          + +L   Q+P+GGFG  P    P +++T  
Sbjct: 20  GGSDVAMTALALLALAALGETPDVKK---ALAWLLSQQNPDGGFGYDPQSNSPDLSSTAY 76

Query: 68  AVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGF 103
           A+  L +LG       +   K   +L   + PDGGF
Sbjct: 77  ALAALELLGGEPDDEAVE--KAVDYLLSCQNPDGGF 110

Length = 112

>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 18/43 (41%), Positives = 24/43 (55%)

Query: 132 DLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLL 174
                  ++L +CQ  +GGF G PG E+   YT+C  AAL LL
Sbjct: 1   IDKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALL 43

Length = 44

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 18/125 (14%)

Query: 138 REWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFE 197
            ++L + Q  +GG+    G  +    T     AL  L      D+K  L W  ++Q N +
Sbjct: 1   VDYLLSQQNPDGGWGAAVGGGSDVAMTALALLALAALGETP--DVKKALAWLLSQQ-NPD 57

Query: 198 GGFQGRTNKLVDGCYSFWQG--GLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQ 255
           GGF            S       L  L      +A +  +D            Y+L  CQ
Sbjct: 58  GGFGYDPQSNSPDLSSTAYALAALELLGGEPDDEAVEKAVD------------YLL-SCQ 104

Query: 256 HFNGG 260
           + +GG
Sbjct: 105 NPDGG 109

Length = 112

>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 17/40 (42%), Positives = 21/40 (52%)

Query: 84  INRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVA 123
           I++ KL  +L   + PDGGF    GGE D    YCAL   
Sbjct: 1   IDKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAAL 40

Length = 44

>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 181 DIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLI 223
           D + L+ +  + Q N +GGF GR     D  Y++       L+
Sbjct: 2   DKEKLVDYLLSCQ-NPDGGFGGRPGGESDTYYTYCALAALALL 43

Length = 44

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
KOG0365|consensus	423		100.0
PLN02710	439	farnesyltranstransferase subunit beta	100.0
cd02893	299	FTase Protein farnesyltransferase (FTase)_like pro	100.0
cd02895	307	GGTase-I Geranylgeranyltransferase types I (GGTase	100.0
PLN03201	316	RAB geranylgeranyl transferase beta-subunit; Provi	100.0
KOG0366|consensus	329		100.0
COG5029	342	CAL1 Prenyltransferase, beta subunit [Posttranslat	100.0
KOG0367|consensus	347		100.0
cd02894	287	GGTase-II Geranylgeranyltransferase type II (GGTas	100.0
cd02890	286	PTase Protein prenyltransferase (PTase) domain, be	100.0
cd02895	307	GGTase-I Geranylgeranyltransferase types I (GGTase	100.0
cd02894	287	GGTase-II Geranylgeranyltransferase type II (GGTas	100.0
PLN03201	316	RAB geranylgeranyl transferase beta-subunit; Provi	100.0
cd02890	286	PTase Protein prenyltransferase (PTase) domain, be	100.0
PLN02710	439	farnesyltranstransferase subunit beta	100.0
cd02893	299	FTase Protein farnesyltransferase (FTase)_like pro	100.0
COG5029	342	CAL1 Prenyltransferase, beta subunit [Posttranslat	100.0
KOG0366|consensus	329		100.0
KOG0367|consensus	347		100.0
KOG0365|consensus	423		100.0
cd00688	300	ISOPREN_C2_like This group contains class II terpe	99.97
cd00688	300	ISOPREN_C2_like This group contains class II terpe	99.95
cd02889	348	SQCY Squalene cyclase (SQCY) domain; found in clas	99.89
TIGR03463	634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	99.88
PF13249	113	Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B	99.86
cd02892	634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	99.85
TIGR01507	635	hopene_cyclase squalene-hopene cyclase. SHC is an	99.85
TIGR01507	635	hopene_cyclase squalene-hopene cyclase. SHC is an	99.85
cd02892	634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	99.84
TIGR03463	634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	99.84
cd02889	348	SQCY Squalene cyclase (SQCY) domain; found in clas	99.84
PLN02993	763	lupeol synthase	99.84
PLN03012	759	Camelliol C synthase	99.84
COG1689	274	Uncharacterized protein conserved in archaea [Func	99.83
TIGR01787	621	squalene_cyclas squalene/oxidosqualene cyclases. T	99.83
TIGR01787	621	squalene_cyclas squalene/oxidosqualene cyclases. T	99.8
PF13249	113	Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B	99.79
PLN03012	759	Camelliol C synthase	99.77
PLN02993	763	lupeol synthase	99.77
COG1689	274	Uncharacterized protein conserved in archaea [Func	99.68
cd02897	292	A2M_2 Proteins similar to alpha2-macroglobulin (al	99.63
cd02896	297	complement_C3_C4_C5 Proteins similar to C3, C4 and	99.62
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432	44	Prenyltrans: Prenyltransferase and squalene oxidas	99.46
cd02896	297	complement_C3_C4_C5 Proteins similar to C3, C4 and	99.46
cd02897	292	A2M_2 Proteins similar to alpha2-macroglobulin (al	99.45
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432	44	Prenyltrans: Prenyltransferase and squalene oxidas	99.36
PF13243	109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	99.35
PF13243	109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	99.34
KOG0497|consensus	760		99.27
cd02891	282	A2M_like Proteins similar to alpha2-macroglobulin	99.22
KOG0497|consensus	760		99.02
PF07678	246	A2M_comp: A-macroglobulin complement component; In	98.93
PF07678	246	A2M_comp: A-macroglobulin complement component; In	98.8
cd02891	282	A2M_like Proteins similar to alpha2-macroglobulin	98.79
COG1657	517	SqhC Squalene cyclase [Lipid metabolism]	98.12
COG1657	517	SqhC Squalene cyclase [Lipid metabolism]	97.81
TIGR02474	290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	97.02
PLN02279	784	ent-kaur-16-ene synthase	96.5
KOG1366|consensus	1436		96.38
TIGR02474	290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	96.1
PLN02592	800	ent-copalyl diphosphate synthase	95.96
PF01122	326	Cobalamin_bind: Eukaryotic cobalamin-binding prote	93.66
COG1331	667	Highly conserved protein containing a thioredoxin	92.86
PF01122	326	Cobalamin_bind: Eukaryotic cobalamin-binding prote	91.53
PF05817	636	Ribophorin_II: Oligosaccharyltransferase subunit R	89.39
PF10022	361	DUF2264: Uncharacterized protein conserved in bact	88.8
PF07944	520	DUF1680: Putative glycosyl hydrolase of unknown fu	88.17
PLN02592	800	ent-copalyl diphosphate synthase	87.98
PF05817	636	Ribophorin_II: Oligosaccharyltransferase subunit R	87.39
PF09492	289	Pec_lyase: Pectic acid lyase; InterPro: IPR012669	87.19

>KOG0365|consensus

Probab=100.00  E-value=6e-75  Score=500.97  Aligned_cols=268  Identities=57%  Similarity=1.040  Sum_probs=257.4

Q ss_pred             CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCc
Q psy15672          1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEA   80 (271)
Q Consensus         1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~   80 (271)
                      ||++|+.+|.+|.|++||.+++|++|+..+++...+++|+||..||.|.|||++.||+.+|+..||+||.+|.++|.+++
T Consensus        88 Lp~~~~~LDASR~Wm~YWil~sl~lL~~~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~A  167 (423)
T KOG0365|consen   88 LPSQYTCLDASRPWMCYWILNSLALLDEWLDDDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSEDA  167 (423)
T ss_pred             CCCcccccccCcchhHHHHHHHHHHhcCcCCHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHHH
Confidence            79999999999999999999999999999998889999999999999999999999999999999999999999999888


Q ss_pred             CCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCc
Q psy15672         81 YNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAH  160 (271)
Q Consensus        81 ~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~  160 (271)
                      ++.||++++++||.++++|||||..+.+||.|+|.+|||+++..++|++.++.++.+.+||.+||+++|||++.|+.|+|
T Consensus       168 ~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~deL~eG~~~wi~~CQtyEGG~GG~P~~EAH  247 (423)
T KOG0365|consen  168 YSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPMDELFEGTLDWIASCQTYEGGFGGEPGVEAH  247 (423)
T ss_pred             HHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccccCCcCCCcccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccc
Q psy15672        161 GGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWL  240 (271)
Q Consensus       161 ~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~  240 (271)
                      ++|||||+|+|++|++.+..|.+++.+|...||..++|||+||.||++|.|||||++++..||+..+...+..  -.+++
T Consensus       248 GGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVDGCYSFWvga~~~il~~~~~~~~~s--~~~~~  325 (423)
T KOG0365|consen  248 GGYTFCALAALALLNEMDQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVDGCYSFWVGASAPILQAFYSSAGHS--LEHLL  325 (423)
T ss_pred             CCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhhhhhccccccccchhhhhHHHHhcchHHHHHHHhcccccc--hhhhh
Confidence            9999999999999999988999999999999999889999999999999999999999999999987654431  13578


Q ss_pred             cCHHHHHHHHHhhhCCCCCCcCCCCCCCCC
Q psy15672        241 FHHRALQEYILICCQHFNGGLLDKPENMVA  270 (271)
Q Consensus       241 ~~~~~l~~~il~~~Q~~~GGf~~~p~~~~d  270 (271)
                      +|.++|++|||.|||.+.|||+|||++|+|
T Consensus       326 F~~~~LqeYIL~CcQ~~~GGlrDKP~K~~D  355 (423)
T KOG0365|consen  326 FNKEALQEYILLCCQSPSGGLRDKPGKPRD  355 (423)
T ss_pred             cCHHHHHHHHHhhccCCCCCccCCCCCCcc
Confidence            999999999999999999999999999998

>PLN02710 farnesyltranstransferase subunit beta

Probab=100.00  E-value=1.4e-73  Score=522.18  Aligned_cols=270  Identities=51%  Similarity=0.951  Sum_probs=249.8

Q ss_pred             CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCc
Q psy15672          1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEA   80 (271)
Q Consensus         1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~   80 (271)
                      ||+.|+++|.+|+|++||+|++|.+|+.++++++++++++||.+||+++|||++.+++++|+.+||+|+++|.+||.++.
T Consensus        60 lp~~~~~lDa~r~~~~Yw~L~sL~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~~  139 (439)
T PLN02710         60 LGPSFSVLDANRPWLCYWILHSIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERA  139 (439)
T ss_pred             CChhhhhhhhhhHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCCCCCccHHHHHHHHHHHHHcCCchh
Confidence            79999999999999999999999999998888899999999999999999999999999999999999999999998655


Q ss_pred             CCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCc
Q psy15672         81 YNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAH  160 (271)
Q Consensus        81 ~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~  160 (271)
                      ++.+|++++++||+++|++||||...+++|+|+|+||||++++.+++..+.++++++++||++||++||||+++|++|+|
T Consensus       140 l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH  219 (439)
T PLN02710        140 LSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAH  219 (439)
T ss_pred             hcccCHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHHHHHHHhCCCCCCCCCCCCCCCc
Confidence            67899999999999999999999999999999999999999999999888889999999999999999999999999999


Q ss_pred             hhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCC-------
Q psy15672        161 GGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDT-------  233 (271)
Q Consensus       161 ~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~-------  233 (271)
                      ++||||||++|.+||+.+.+|.+++++||+.||.. +|||+|||||.+|+|||||++++|.||+.......+.       
T Consensus       220 ~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~-~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~~~  298 (439)
T PLN02710        220 GGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGV-EGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSS  298 (439)
T ss_pred             hHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcCc-CCCcCCCCCCCCCchhhHHHHHHHHHHHHHhhcccccccccccc
Confidence            99999999999999998888999999999999985 8999999999999999999999999999864321000       


Q ss_pred             ------------------------------------C----CCCccccCHHHHHHHHHhhhCCCCCCcCCCCCCCCCC
Q psy15672        234 ------------------------------------C----LDGHWLFHHRALQEYILICCQHFNGGLLDKPENMVAS  271 (271)
Q Consensus       234 ------------------------------------~----~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~p~~~~d~  271 (271)
                                                          +    .....++|.++|++||+.|||.++|||+|+||+++|.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aL~~yIL~c~q~~~GG~~DkPgk~~D~  376 (439)
T PLN02710        299 IMFEELEDDACETSSSGKDDAGDTDSADYSKVGFDFIKASNQQMGPLFHSIALQQYILLCSQVLDGGLRDKPGKSRDY  376 (439)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCch
Confidence                                                0    0112368999999999988888999999999999995

>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=4.6e-70  Score=484.99  Aligned_cols=271  Identities=55%  Similarity=0.994  Sum_probs=249.9

Q ss_pred             CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCc
Q psy15672          1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEA   80 (271)
Q Consensus         1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~   80 (271)
                      +|..|+++|.+|+|++||+|++|.+|+.++++.+++++++||++||+++|||++.+++++|+.+||+|+++|.+++.++.
T Consensus        15 ~p~~~~~~d~~~~~~~y~~l~~l~lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~~   94 (299)
T cd02893          15 LPSSFTSLDASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEA   94 (299)
T ss_pred             CCccccccccccHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCchh
Confidence            59999999999999999999999999987777789999999999999999999999999999999999999999997544


Q ss_pred             CCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCc
Q psy15672         81 YNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAH  160 (271)
Q Consensus        81 ~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~  160 (271)
                      ++.+|++++++||+++|++||||...+++|+|+|+||||++++.+++..++++++++++||++||++||||+++|++|+|
T Consensus        95 ~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h  174 (299)
T cd02893          95 YDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSCQTYEGGFGGVPGNEAH  174 (299)
T ss_pred             hhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCCCCCcCCCCCCCCC
Confidence            56789999999999999999999999999999999999999999999888889999999999999999999999999999


Q ss_pred             hhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCC-CCCCcc
Q psy15672        161 GGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDT-CLDGHW  239 (271)
Q Consensus       161 ~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~-~~~~~~  239 (271)
                      ++||||||++|.++|..+.+|.+++++||++||.+.+|||+|||||.+|+|||||++++|++|+..++.+++. -.+..+
T Consensus       175 ~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~  254 (299)
T cd02893         175 GGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGT  254 (299)
T ss_pred             ccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            9999999999999999888899999999999999878999999999999999999999999999886543210 011246


Q ss_pred             ccCHHHHHHHHHhhhCCCCCCcCCCCCCCCCC
Q psy15672        240 LFHHRALQEYILICCQHFNGGLLDKPENMVAS  271 (271)
Q Consensus       240 ~~~~~~l~~~il~~~Q~~~GGf~~~p~~~~d~  271 (271)
                      ++|.++|++||+.++|+.+|||+|+|++++|+
T Consensus       255 ~~~~~~l~~~il~~~q~~~GGf~~~p~~~~D~  286 (299)
T cd02893         255 LFDQEALQEYILLCCQSEEGGLRDKPGKPRDF  286 (299)
T ss_pred             ccCHHHHHHHHHHhcCCCCCCcCCCCCCCCCc
Confidence            79999999999965567799999999999996

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro

>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=6e-67  Score=466.35  Aligned_cols=255  Identities=33%  Similarity=0.594  Sum_probs=236.9

Q ss_pred             CCCCCccCccChHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcC----CCCCCCCCCCC----------CCCchHH
Q psy15672          1 MSRVGNCLDASRAWICYWICHSLSLLDEPL--SSADKSCVVNFLSQCQ----SPNGGFGGGPG----------QDPHIAA   64 (271)
Q Consensus         1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~--~~~~~~~~i~~l~~~q----~~dGGF~~~~~----------~~~~~~~   64 (271)
                      ||++|+++|++|+|++||+|++|.+|+.+.  +..+++++++||++||    +++|||++.++          +++|+++
T Consensus        15 lp~~~~~~d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~   94 (307)
T cd02895          15 LPSSYQSLDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAM   94 (307)
T ss_pred             CCchhhhhhhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHH
Confidence            799999999999999999999999999876  5788999999999999    99999999775          4799999


Q ss_pred             HHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeeccc---CCCCChhHHHHHHHHHHHhCcCC--hhhHHHHHH
Q psy15672         65 TYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHD---GGEVDIRGVYCALCVALLTQVYS--EDLFNNTRE  139 (271)
Q Consensus        65 Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~---~~e~d~~~ty~a~~~l~ll~~~~--~~~~~~~~~  139 (271)
                      ||+|+++|.+|+++  .+.+|++++++||+++|++||||...+   ++|+|+|+||||++++.+++..+  ..+++++++
T Consensus        95 ty~Al~~L~lL~~~--~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~~~d~~~li~  172 (307)
T cd02895          95 TYFALLSLLILGDD--LSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLID  172 (307)
T ss_pred             HHHHHHHHHHhCCc--hhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCccccccHHHHHH
Confidence            99999999999974  346899999999999999999999886   78999999999999999999775  467899999


Q ss_pred             HHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCC---ccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhh
Q psy15672        140 WLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEH---LCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQ  216 (271)
Q Consensus       140 ~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~---~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~  216 (271)
                      ||++||++||||+..|+.|+|+++||||+++|.+|+..+   .++.+++++||++||+. +|||+|||+|.+|+|||||+
T Consensus       173 ~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~-~GGF~gr~~k~~D~cysfw~  251 (307)
T cd02895         173 YIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVS-GTGFNGRPNKPADTCYSFWV  251 (307)
T ss_pred             HHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCC-CCCcCCCCCCCCccchhhHH
Confidence            999999999999999999999999999999999999975   67999999999999998 79999999999999999999


Q ss_pred             hhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhC-CCCCCcCCCCCCCCCC
Q psy15672        217 GGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQ-HFNGGLLDKPENMVAS  271 (271)
Q Consensus       217 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q-~~~GGf~~~p~~~~d~  271 (271)
                      +++|.+|+..            .++|.+++++||+. || ..+|||+++|+++||+
T Consensus       252 ~a~L~iL~~~------------~~id~~~l~~~l~~-~q~~~~GGf~~~p~~~~D~  294 (307)
T cd02895         252 GASLKLLDAF------------QLIDFEKNRNYLLS-TQQSLVGGFAKNPDSHPDP  294 (307)
T ss_pred             HHHHHHcCcc------------cccCHHHHHHHHHH-HcCCCCCCcCCCCCCCCCh
Confidence            9999999865            26899999999995 66 4599999999999996

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r

>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional

Probab=100.00  E-value=3.4e-66  Score=462.99  Aligned_cols=253  Identities=34%  Similarity=0.632  Sum_probs=236.8

Q ss_pred             CCCCCccC--ccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCC
Q psy15672          1 MSRVGNCL--DASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTP   78 (271)
Q Consensus         1 ~p~~~~~~--d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~   78 (271)
                      +|.+|++.  |.+|++.+||+|++|++|+. .+..+++++++||++||+++|||++.+++++|+.+||+|+++|.+++. 
T Consensus        23 ~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~-~~~~~~~~~i~~l~~cq~~~GGF~~~~~~~~h~~~Ty~al~~L~ll~~-  100 (316)
T PLN03201         23 KKDSFESVVMEHLRMNGAYWGLTALDLLGK-LDDVDRDEVVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDR-  100 (316)
T ss_pred             CCCCccccccccchHHHHHHHHHHHHHhCC-CccccHHHHHHHHHHhcCCCCCcCCCCCCcccHHHHHHHHHHHHHhhh-
Confidence            47888776  88999999999999999997 456788999999999999999999999999999999999999999964 


Q ss_pred             CcCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCC
Q psy15672         79 EAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFE  158 (271)
Q Consensus        79 ~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~e  158 (271)
                        ++.+|++++++||+++|++||||...+++|.|+|+||||++++.+++..+..+++++++||++||++||||+.+|++|
T Consensus       101 --~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~~i~scq~~dGGF~~~p~~e  178 (316)
T PLN03201        101 --LDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGE  178 (316)
T ss_pred             --hhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCCCCCcCCCCCCC
Confidence              467899999999999999999999989999999999999999999998777889999999999999999999999999


Q ss_pred             CchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCc
Q psy15672        159 AHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGH  238 (271)
Q Consensus       159 s~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~  238 (271)
                      +|+++|||||++|+++|..+.+|.+++++||++||+. +|||+|||||.+|+|||||++++|.+|+..            
T Consensus       179 sh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~-~GGf~grp~k~~D~cys~w~~a~L~ll~~~------------  245 (316)
T PLN03201        179 SHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIIIDRV------------  245 (316)
T ss_pred             CccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCC-CCCcCCCCCCCCchHHHHHHHHHHHHhccc------------
Confidence            9999999999999999998888999999999999987 799999999999999999999999999875            


Q ss_pred             cccCHHHHHHHHHhhhCCC-CCCcCCCCCCCCCC
Q psy15672        239 WLFHHRALQEYILICCQHF-NGGLLDKPENMVAS  271 (271)
Q Consensus       239 ~~~~~~~l~~~il~~~Q~~-~GGf~~~p~~~~d~  271 (271)
                      .++|.+++++||+. ||++ .|||+|+|++.+|+
T Consensus       246 ~~~d~~~l~~~i~~-~q~~~~GGf~~~p~~~~D~  278 (316)
T PLN03201        246 HWIDKDKLAKFILD-CQDDENGGISDRPDDAVDV  278 (316)
T ss_pred             cccCHHHHHHHHHH-HcCCCCCCcCCCcCCCCCh
Confidence            26899999999995 7875 89999999999996

>KOG0366|consensus

Probab=100.00  E-value=1.9e-65  Score=427.63  Aligned_cols=245  Identities=34%  Similarity=0.650  Sum_probs=232.2

Q ss_pred             ccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHH
Q psy15672          9 DASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPK   88 (271)
Q Consensus         9 d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~   88 (271)
                      |.-|+.-+||++++|.+|++. ...++++++.||++||+++|||++.+++.+|+.+|++||++|.++..   ++.+|+++
T Consensus        43 EhlRmsgiYWg~tal~ll~~l-e~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~hll~TlsAvQiL~~yds---i~~~d~d~  118 (329)
T KOG0366|consen   43 EHLRMSGIYWGLTALDLLGQL-ERMSREEIVSFVLSCQHEDGGFAGCPGHDPHLLYTLSAVQILALYDS---INVLDRDK  118 (329)
T ss_pred             hHhhhcchhhhhhHHHHhccc-chhhHHHHHHHHHheecCCCCcCCCCCCChHHHHHHHHHHHHHHHcc---cccccHHH
Confidence            344667799999999999984 45679999999999999999999999999999999999999999975   46789999


Q ss_pred             HHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhh
Q psy15672         89 LKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGF  168 (271)
Q Consensus        89 ~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al  168 (271)
                      +++||..+|++||+|.+..++|.|+|++|||+++|++|+.++..+++++|+|+++|.|.||||+-+|+.|||++..||++
T Consensus       119 v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld~~nve~aVd~~~~CyN~DGGFG~~pGaESHagqifcCv  198 (329)
T KOG0366|consen  119 VASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLDTINVEKAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCV  198 (329)
T ss_pred             HHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHHHhhHHHHHHHHHhhcccCCCcCCCCCcccccceehhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHH
Q psy15672        169 AALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQE  248 (271)
Q Consensus       169 ~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~  248 (271)
                      ++|+++|+.+.+|.+.+-.||..||.+ .||.+|||.|.||+||+||++++|.|++..           +| +|+++|++
T Consensus       199 gaLai~~~L~~vd~d~lgwwlceRQ~~-sGGLNGRpeKlpDVCYSwWvlsSL~iigrl-----------~w-Id~ekL~~  265 (329)
T KOG0366|consen  199 GALAITGKLHLVDRDLLGWWLCERQLP-SGGLNGRPEKLPDVCYSWWVLSSLAIIGRL-----------HW-IDREKLTK  265 (329)
T ss_pred             HHHHHccchhhcCHHHHHHHHHhccCC-CCCCCCCcccCcchhhHHHHHhHHHHhhhh-----------hh-ccHHHHHH
Confidence            999999999999999999999999998 899999999999999999999999999987           45 89999999


Q ss_pred             HHHhhhCC-CCCCcCCCCCCCCCC
Q psy15672        249 YILICCQH-FNGGLLDKPENMVAS  271 (271)
Q Consensus       249 ~il~~~Q~-~~GGf~~~p~~~~d~  271 (271)
                      ||+ .||. +.|||+|+|++.+|+
T Consensus       266 FIl-~cQd~~~GGfsDRpgd~~D~  288 (329)
T KOG0366|consen  266 FIL-ACQDEETGGFSDRPGDEVDI  288 (329)
T ss_pred             HHH-hcCCCCCCCcCCCCCCcccH
Confidence            999 6998 599999999999985

>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-65  Score=438.34  Aligned_cols=256  Identities=40%  Similarity=0.705  Sum_probs=239.7

Q ss_pred             CCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcC
Q psy15672          2 SRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAY   81 (271)
Q Consensus         2 p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~   81 (271)
                      |..|.-.|.+|+|++||..++|.+++.......+|+.+.++++|+.+.|||++.+++.+|+.+|++|+++|.+++..+.+
T Consensus        44 ~~~~~l~~~~~~~~iyw~~~sl~~l~~~~~~~~~er~i~~v~~~~~~~G~f~~~~g~~~hL~sT~~Ai~~L~~~d~~~~~  123 (342)
T COG5029          44 PSLFGLLEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFVLGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLDVL  123 (342)
T ss_pred             cchhhhhhhcchhhhhhccchHHHhcCcchhhhhhhhheeeeeeecCCCCcCCCCccchhHHHHHHHHHHHHHhcccccc
Confidence            55566678899999999999999999875567899999999999999999999999999999999999999999865556


Q ss_pred             CcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCch
Q psy15672         82 NCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHG  161 (271)
Q Consensus        82 ~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~  161 (271)
                      +.++++.+.+||..+|+|||+|.....+|+|+|+.|+|+.+++++|..+.++++.+++||++||++||||+..|+.|+|+
T Consensus       124 ~~idr~~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHa  203 (342)
T COG5029         124 SRIDRDSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHA  203 (342)
T ss_pred             chhhHHHHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHhhccCCcccCCCchhhcc
Confidence            78889999999999999999999988899999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhHHHhhccCCccC-HHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccc
Q psy15672        162 GYTFCGFAALCLLKSEHLCD-IKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWL  240 (271)
Q Consensus       162 ~~T~~al~aL~llg~~~~~~-~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~  240 (271)
                      +|||||+++|++|++.+..+ ++++++||.+||.+ .|||+||+||.+|+||+||++++|.||+..            .+
T Consensus       204 g~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~s-sgGl~GR~nKl~D~CYs~WvlsSl~il~~~------------~~  270 (342)
T COG5029         204 GYTFCALAALALLGKLDKLSDVEKLIRWLAERQLS-SGGLNGRSNKLVDTCYSFWVLSSLAILGKL------------DF  270 (342)
T ss_pred             chHHHHHHHHHHHhcccccchHHHHHHHHHHcccc-cCCcCCCcccCccchhhhhhcchHHhcchh------------hh
Confidence            99999999999999998877 79999999999999 899999999999999999999999999975            26


Q ss_pred             cCHHHHHHHHHhhhCCCCCCcCCCCCCCCC
Q psy15672        241 FHHRALQEYILICCQHFNGGLLDKPENMVA  270 (271)
Q Consensus       241 ~~~~~l~~~il~~~Q~~~GGf~~~p~~~~d  270 (271)
                      +|.+.|++||+.+||...|||+|+|++.+|
T Consensus       271 in~e~L~~yiL~c~q~~sGGfsdrp~~~~D  300 (342)
T COG5029         271 INTEELTDYILDCQQETSGGFSDRPGEEPD  300 (342)
T ss_pred             cCHHHHHHHHHhhcccCCCCCCCCCcccch
Confidence            999999999997666679999999999998

>KOG0367|consensus

Probab=100.00  E-value=1.3e-64  Score=429.48  Aligned_cols=254  Identities=34%  Similarity=0.656  Sum_probs=231.6

Q ss_pred             CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCC--------CCCCCC----------CCCCCch
Q psy15672          1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPN--------GGFGGG----------PGQDPHI   62 (271)
Q Consensus         1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~d--------GGF~~~----------~~~~~~~   62 (271)
                      ||.+|+++|.+|++++||+|++|++|+.. +..+++.+++||++.|-..        -||.++          +.+++|+
T Consensus        27 lP~~y~shd~~R~tiafFaisGLd~L~~l-d~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~Gsr~~~~p~~~~~~~~~~l  105 (347)
T KOG0367|consen   27 LPSPYQSHDTNRLTIAFFAISGLDLLDAL-DSVDKDDIIEWIYKLQVTPTDRTNLKICGFRGSRSMNIPIATNTYNEPHL  105 (347)
T ss_pred             CCCcccccccchHHHHHHHHcchhhhhhh-hccchhHHHHHHHhceeccccCCCceeeeeeeeccccCCCCCCCCcchhH
Confidence            79999999999999999999999999984 4556999999999988421        357653          2257899


Q ss_pred             HHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecc-cCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHH
Q psy15672         63 AATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVH-DGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWL  141 (271)
Q Consensus        63 ~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~-~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l  141 (271)
                      .+||+++++|.+||++  ++.+|++.+++++..+|++||+|... .++|+|+|++|||++++++++..+..+.++++.||
T Consensus       106 A~Ty~sl~~L~~lGdd--LsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s~iD~ek~~~yI  183 (347)
T KOG0367|consen  106 AMTYTSLACLVILGDD--LSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWSGIDKEKLIGYI  183 (347)
T ss_pred             HHHHHHHHHHHHHcch--HhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhccccccCHHHHHHHH
Confidence            9999999999999987  68999999999999999999999864 56799999999999999999988889999999999


Q ss_pred             HHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccC--C----ccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhh
Q psy15672        142 TACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSE--H----LCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFW  215 (271)
Q Consensus       142 ~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~--~----~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w  215 (271)
                      ++||++||||+..|+.|+|+++||||||+|+++|+.  +    ..+++++++|+++||.. +|||+||+||++|+||+||
T Consensus       184 ~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~-sgGfqGR~NKp~DTCYaFW  262 (347)
T KOG0367|consen  184 RSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVS-SGGFQGRTNKPVDTCYAFW  262 (347)
T ss_pred             HHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhc-cCCcCCCCCCCchhHHHHH
Confidence            999999999999999999999999999999999997  3    23589999999999998 8999999999999999999


Q ss_pred             hhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCC-CCCcCCCCCCCCCC
Q psy15672        216 QGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHF-NGGLLDKPENMVAS  271 (271)
Q Consensus       216 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~-~GGf~~~p~~~~d~  271 (271)
                      ++++|++|++.            |++|..++++||+ +||.+ .|||+|+|+..||+
T Consensus       263 igasLklL~~~------------~~~d~~~lr~fll-~~Q~~~iGGFsK~P~~~pD~  306 (347)
T KOG0367|consen  263 IGASLKLLDAD------------WLIDKQVLRKFLL-STQDKLIGGFSKWPEEDPDL  306 (347)
T ss_pred             HHHHHHHccch------------HhhhHHHHHHHHH-HhhhhhcCcccCCCccCchH
Confidence            99999999986            5899999999999 69998 69999999999984

>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=7.3e-63  Score=437.47  Aligned_cols=253  Identities=35%  Similarity=0.631  Sum_probs=236.6

Q ss_pred             CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCC
Q psy15672          1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQ-SPNGGFGGGPGQDPHIAATYAAVNCLIILGTPE   79 (271)
Q Consensus         1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q-~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~   79 (271)
                      +|.+|+++|++|+|++||+|++|.+|+.. +..+++++++||++|| +++|||++.++.++|+.+||+|+++|.+++.  
T Consensus        18 ~~~~~~~~~~~r~~~~y~~l~~l~lL~~~-~~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~~t~~a~~~L~ll~~--   94 (287)
T cd02894          18 DDYEYILTEHLRMSGIYWGLTALDLLGQL-ERLNREEIIEFVKSCQDNEDGGFGGSPGHDPHILSTLSAIQILALYDL--   94 (287)
T ss_pred             CChhhhhHHhhHHHHHHHHHHHHHHhCCC-chhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhhh--
Confidence            59999999999999999999999999974 4568999999999999 7799999999889999999999999999975  


Q ss_pred             cCCcCC--hHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCC
Q psy15672         80 AYNCIN--RPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGF  157 (271)
Q Consensus        80 ~~~~~~--~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~  157 (271)
                       ++.++  ++++++||+++|++||||...+++|+|+++||||++++.+++..+..+++++++||++||++||||+++|++
T Consensus        95 -~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~q~~dGGF~~~~~~  173 (287)
T cd02894          95 -LNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSCYNFDGGFGCRPGA  173 (287)
T ss_pred             -hhhccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCCCCcCCCCCC
Confidence             24567  999999999999999999999999999999999999999999877788999999999999999999999999


Q ss_pred             CCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCC
Q psy15672        158 EAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDG  237 (271)
Q Consensus       158 es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~  237 (271)
                      |+|+++|||||++|.++|+.+.++.+++++||++||++ +|||+|||+|.+|+|||||++++|.+|+..           
T Consensus       174 es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~-~GGf~gr~~k~~D~~ysf~~~a~l~~l~~~-----------  241 (287)
T cd02894         174 ESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLP-SGGLNGRPEKLPDVCYSWWVLSSLKIIGRL-----------  241 (287)
T ss_pred             CCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCC-CCCcCCCCCCCCchhHhhHHHHHHHHhccc-----------
Confidence            99999999999999999998888999999999999998 899999999999999999999999999875           


Q ss_pred             ccccCHHHHHHHHHhhhCC-CCCCcCCCCCCCCCC
Q psy15672        238 HWLFHHRALQEYILICCQH-FNGGLLDKPENMVAS  271 (271)
Q Consensus       238 ~~~~~~~~l~~~il~~~Q~-~~GGf~~~p~~~~d~  271 (271)
                      + ++|.+++++||+ .||+ ++|||+++|++.+|+
T Consensus       242 ~-~~~~~~l~~~l~-~~q~~~~GGf~~~p~~~~D~  274 (287)
T cd02894         242 H-WINKNKLKNFIL-ACQDEEDGGFADRPGNMVDV  274 (287)
T ss_pred             c-ccCHHHHHHHHH-HhcCCCCCCcCCCCCCCCCh
Confidence            1 489999999999 5884 699999999999996

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr

>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=1.5e-60  Score=422.93  Aligned_cols=258  Identities=48%  Similarity=0.871  Sum_probs=241.2

Q ss_pred             CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCC
Q psy15672          1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQ-SPNGGFGGGPGQDPHIAATYAAVNCLIILGTPE   79 (271)
Q Consensus         1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q-~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~   79 (271)
                      +|..+++.|++++|++||+|++|.+|+..++..+++++++||++|| ++||||+..++.++|+..||+|+.+|.++|.+ 
T Consensus        15 ~~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~-   93 (286)
T cd02890          15 LPSSYTSLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDD-   93 (286)
T ss_pred             CChhhhhHHhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCcc-
Confidence            3788999999999999999999999999888889999999999999 99999999988999999999999999999973 


Q ss_pred             cCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCC
Q psy15672         80 AYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEA  159 (271)
Q Consensus        80 ~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es  159 (271)
                      ..+.++++++++||.++|++||||...+++++|+++||||++++.++|....++++++++||++||++||||+.+|++|+
T Consensus        94 ~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~es  173 (286)
T cd02890          94 ALSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAES  173 (286)
T ss_pred             ccchhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhCCCCCCcCCCCCCCC
Confidence            23567899999999999999999999889999999999999999999987778899999999999999999999999999


Q ss_pred             chhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCcc
Q psy15672        160 HGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHW  239 (271)
Q Consensus       160 ~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~  239 (271)
                      |+++||||+++|.++|..+.++++++++||++||+...|||+|||+|.+|+|||||++++|.+|+..           + 
T Consensus       174 ~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~~-----------~-  241 (286)
T cd02890         174 HGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKILGRL-----------H-  241 (286)
T ss_pred             CccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhhHHHHHHHHcccc-----------c-
Confidence            9999999999999999988889999999999999984449999999999999999999999999875           1 


Q ss_pred             ccCHHHHHHHHHhhhCCCCCCcCCCCCCCCCC
Q psy15672        240 LFHHRALQEYILICCQHFNGGLLDKPENMVAS  271 (271)
Q Consensus       240 ~~~~~~l~~~il~~~Q~~~GGf~~~p~~~~d~  271 (271)
                      ++|.+++.+||+.++|+++|||+++|++++|+
T Consensus       242 ~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~  273 (286)
T cd02890         242 LIDQEKLREYILSCQQSEVGGFSDKPGKPPDL  273 (286)
T ss_pred             ccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCc
Confidence            38999999999965788899999999999996

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re

>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=6.5e-51  Score=363.26  Aligned_cols=215  Identities=27%  Similarity=0.413  Sum_probs=201.0

Q ss_pred             CccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCC---CCCCchHHHHHHHHHHHHhCCCCcCCcC
Q psy15672          8 LDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGP---GQDPHIAATYAAVNCLIILGTPEAYNCI   84 (271)
Q Consensus         8 ~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~---~~~~~~~~Ty~Av~~L~~lg~~~~~~~~   84 (271)
                      .+.++++.+||++.+|.+|+.+.+..+++++++||++||++||||+..+   +.++|++.||+||.+|.+|+..+. +.+
T Consensus        87 ~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~-~~~  165 (307)
T cd02895          87 YDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSE-EDI  165 (307)
T ss_pred             CCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCcc-ccc
Confidence            4789999999999999999986666789999999999999999999886   789999999999999999997421 257


Q ss_pred             ChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCC---hhhHHHHHHHHHHcccCCCCCCCCCCCCCch
Q psy15672         85 NRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYS---EDLFNNTREWLTACQTYEGGFSGYPGFEAHG  161 (271)
Q Consensus        85 ~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~---~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~  161 (271)
                      |++++++||.++|++||||+..+++|+|.++||||+++|.+++...   .++.+++++||++||+.+|||+++|++++|+
T Consensus       166 d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~  245 (307)
T cd02895         166 DKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADT  245 (307)
T ss_pred             cHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCcc
Confidence            8999999999999999999999999999999999999999999765   6889999999999999999999999999999


Q ss_pred             hhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHH
Q psy15672        162 GYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLI  223 (271)
Q Consensus       162 ~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l  223 (271)
                      +||||++++|.+|++.+.+|++++.+||+.||++.+|||+++|+|.||+|||||++++|+++
T Consensus       246 cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~la~Lsl~  307 (307)
T cd02895         246 CYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAALSLI  307 (307)
T ss_pred             chhhHHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence            99999999999999988899999999999998766899999999999999999999999874

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r

>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=1.4e-47  Score=339.71  Aligned_cols=210  Identities=23%  Similarity=0.336  Sum_probs=195.3

Q ss_pred             cChHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChH
Q psy15672         10 ASRAWICYWICHSLSLLDEPLSSAD--KSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRP   87 (271)
Q Consensus        10 ~~~~~~~y~~l~~L~lL~~~~~~~~--~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~   87 (271)
                      .+++..+|.++.+|.+|+. .+..+  ++++++||++||++||||++.++.++|++.||+|+++|.+++..   +.++++
T Consensus        76 ~~~~~~t~~a~~~L~ll~~-~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~---~~i~~~  151 (287)
T cd02894          76 DPHILSTLSAIQILALYDL-LNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKL---DLIDVD  151 (287)
T ss_pred             cchHHHHHHHHHHHHHhhh-hhhccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCc---chhhHH
Confidence            3578889999999999864 23334  89999999999999999999999999999999999999999863   567899


Q ss_pred             HHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhh
Q psy15672         88 KLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCG  167 (271)
Q Consensus        88 ~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~a  167 (271)
                      ++++||.++|++||||...+++|+|+++||||+++|.++|..+..+++++++||++||+++|||+++|++++|++||||+
T Consensus       152 ~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~~  231 (287)
T cd02894         152 KAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV  231 (287)
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhHH
Confidence            99999999999999999999999999999999999999998877889999999999999999999999999999999999


Q ss_pred             hhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHH
Q psy15672        168 FAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLI  223 (271)
Q Consensus       168 l~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l  223 (271)
                      +++|.+++..+..|.+++++||+++|+..+|||+++|+|.+|+|||||++++|++|
T Consensus       232 ~a~l~~l~~~~~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~Lsl~  287 (287)
T cd02894         232 LSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGLSLL  287 (287)
T ss_pred             HHHHHHhccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence            99999999987789999999999999655899999999999999999999999985

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr

>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional

Probab=100.00  E-value=8.4e-47  Score=337.88  Aligned_cols=212  Identities=23%  Similarity=0.340  Sum_probs=199.8

Q ss_pred             ChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHH
Q psy15672         11 SRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLK   90 (271)
Q Consensus        11 ~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~   90 (271)
                      .|+..||.++.+|.+++. ++..+++++++||.++|++||||.+.++.+.|++.||+|+++|.+++..   +.+++++++
T Consensus        83 ~h~~~Ty~al~~L~ll~~-~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~---~~i~~~~~~  158 (316)
T PLN03201         83 PHILYTLSAVQILALFDR-LDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRL---DKINVEKAV  158 (316)
T ss_pred             ccHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCcc---chhHHHHHH
Confidence            699999999999999965 5667899999999999999999999888999999999999999999863   457899999


Q ss_pred             HHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhH
Q psy15672         91 QFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAA  170 (271)
Q Consensus        91 ~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~a  170 (271)
                      +||.+||++||||+..|++|+|..+||||+++|.++|..+..+.+++++||.+||+.+|||++||++++|+|||||++++
T Consensus       159 ~~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys~w~~a~  238 (316)
T PLN03201        159 DYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSS  238 (316)
T ss_pred             HHHHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHH
Confidence            99999999999999999999999999999999999997766778899999999999999999999999999999999999


Q ss_pred             HHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHH
Q psy15672        171 LCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRS  226 (271)
Q Consensus       171 L~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~  226 (271)
                      |.+|++.+.+|.+++.+||+.||++..|||+++|+|.+|+|||||.+++|++++..
T Consensus       239 L~ll~~~~~~d~~~l~~~i~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~lsl~~~~  294 (316)
T PLN03201        239 LIIIDRVHWIDKDKLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLLGYP  294 (316)
T ss_pred             HHHhccccccCHHHHHHHHHHHcCCCCCCcCCCcCCCCChhHHHHHHHHHHhcCCC
Confidence            99999988899999999999999876899999999999999999999999999763

>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=4.8e-45  Score=323.54  Aligned_cols=213  Identities=26%  Similarity=0.343  Sum_probs=197.7

Q ss_pred             CccChHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCCh
Q psy15672          8 LDASRAWICYWICHSLSLLDEP-LSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINR   86 (271)
Q Consensus         8 ~d~~~~~~~y~~l~~L~lL~~~-~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~   86 (271)
                      .+.+++..||+++.+|.+|+.+ .+..+++++++||.++|++||||+..++.++|++.||+|+.+|.++|..   ...++
T Consensus        72 ~~~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~---~~~~~  148 (286)
T cd02890          72 GQDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNIL---TDIDK  148 (286)
T ss_pred             CCCccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCc---hhhhH
Confidence            4789999999999999999974 4556789999999999999999999888999999999999999999974   35689


Q ss_pred             HHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCC-CCCCCCCCCCchhhhh
Q psy15672         87 PKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEG-GFSGYPGFEAHGGYTF  165 (271)
Q Consensus        87 ~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dG-GF~~~p~~es~~~~T~  165 (271)
                      +++++||.++|++||||+..+++|+|+++||||+++|.+++..+.++++++++||++||+.+| ||+++|++++|++|||
T Consensus       149 ~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~  228 (286)
T cd02890         149 EKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSF  228 (286)
T ss_pred             HHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhh
Confidence            999999999999999999999999999999999999999998878899999999999999988 9999999999999999


Q ss_pred             hhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHH
Q psy15672        166 CGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLI  223 (271)
Q Consensus       166 ~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l  223 (271)
                      |++++|.+++.....+.+++.+||+.+|+..+|||+++|++.+|+|||||++++|.++
T Consensus       229 ~~~~~l~~l~~~~~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~T~~~l~~lsl~  286 (286)
T cd02890         229 WVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHTYYGLSGLSLL  286 (286)
T ss_pred             HHHHHHHHcccccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCchhHHHHHHHHHcC
Confidence            9999999999987789999999999654444899999999999999999999999874

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re

>PLN02710 farnesyltranstransferase subunit beta

Probab=100.00  E-value=3.7e-45  Score=335.05  Aligned_cols=216  Identities=20%  Similarity=0.272  Sum_probs=199.6

Q ss_pred             ccChHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCCh
Q psy15672          9 DASRAWICYWICHSLSLLDEP--LSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINR   86 (271)
Q Consensus         9 d~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~   86 (271)
                      +.+|+..+|++|++|.+|+.+  ++..+++++++||.+||++||||+..++.++|++.||+|++++.+|+..   ...+.
T Consensus       117 ~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l---~~~~~  193 (439)
T PLN02710        117 QLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNIL---DDELV  193 (439)
T ss_pred             CCccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcC---chhhH
Confidence            468999999999999999974  5567899999999999999999999999999999999999999999863   45679


Q ss_pred             HHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhh
Q psy15672         87 PKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFC  166 (271)
Q Consensus        87 ~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~  166 (271)
                      +++++||.+||+.||||+..|+.|+|..+|||++++|.+||..+..+.+++++||.+||+.+|||++||++.+|+||+||
T Consensus       194 e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSfW  273 (439)
T PLN02710        194 KGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFW  273 (439)
T ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcCcCCCcCCCCCCCCCchhhHH
Confidence            99999999999999999999999999999999999999999877788999999999999999999999999999999999


Q ss_pred             hhhHHHhhccCC-----------------------------------------------------------ccCHHHHHH
Q psy15672        167 GFAALCLLKSEH-----------------------------------------------------------LCDIKALLR  187 (271)
Q Consensus       167 al~aL~llg~~~-----------------------------------------------------------~~~~~~~~~  187 (271)
                      ++++|+++++..                                                           ..|.+++.+
T Consensus       274 ~~a~L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aL~~  353 (439)
T PLN02710        274 QGGVFALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSSGKDDAGDTDSADYSKVGFDFIKASNQQMGPLFHSIALQQ  353 (439)
T ss_pred             HHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCHHHHHH
Confidence            999999998642                                                           146779999


Q ss_pred             HHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHh
Q psy15672        188 WTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSL  227 (271)
Q Consensus       188 wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~  227 (271)
                      ||+.||+...|||+.+|+|.+|.+|||+++++|+++++..
T Consensus       354 yIL~c~q~~~GG~~DkPgk~~D~YHT~y~LsGLSl~q~~~  393 (439)
T PLN02710        354 YILLCSQVLDGGLRDKPGKSRDYYHTCYCLSGLSVAQYSA  393 (439)
T ss_pred             HHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHHhhcc
Confidence            9999976658999999999999999999999999999864

>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=5.7e-44  Score=317.64  Aligned_cols=212  Identities=21%  Similarity=0.279  Sum_probs=196.4

Q ss_pred             CccChHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCC
Q psy15672          8 LDASRAWICYWICHSLSLLDEP--LSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCIN   85 (271)
Q Consensus         8 ~d~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~   85 (271)
                      .+.+|+..||.++.+|.+|+.+  .+..+++++++||.+||++||||+..++.++|++.||+|+.++.+|+..   ...+
T Consensus        71 ~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~---~~~~  147 (299)
T cd02893          71 GQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNIL---TDEL  147 (299)
T ss_pred             CCCccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCC---chhh
Confidence            3478999999999999999974  4567899999999999999999999999999999999999999999863   4567


Q ss_pred             hHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccC-CCCCCCCCCCCCchhhh
Q psy15672         86 RPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTY-EGGFSGYPGFEAHGGYT  164 (271)
Q Consensus        86 ~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~-dGGF~~~p~~es~~~~T  164 (271)
                      .+++++||.+||++||||+..|+.|+|..+|||++++|.+++..+..+++++++||++||+. +|||++||++++|+|||
T Consensus       148 ~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys  227 (299)
T cd02893         148 FEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYS  227 (299)
T ss_pred             HHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHH
Confidence            89999999999999999999999999999999999999999987778899999999999987 99999999999999999


Q ss_pred             hhhhhHHHhhccC-------------CccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHH
Q psy15672        165 FCGFAALCLLKSE-------------HLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPL  222 (271)
Q Consensus       165 ~~al~aL~llg~~-------------~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~  222 (271)
                      ||++++|.++++.             ..+|.+++.+||+.+|++.+|||+++|++.+|++||++++++|++
T Consensus       228 ~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~~~~D~yHT~~~l~~Lsl  298 (299)
T cd02893         228 FWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPGKPRDFYHTCYALSGLSI  298 (299)
T ss_pred             HHHHHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCCchhHHHHHHHHhc
Confidence            9999999999974             346899999999988766689999999999999999999999986

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro

>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.7e-42  Score=292.94  Aligned_cols=215  Identities=21%  Similarity=0.307  Sum_probs=200.7

Q ss_pred             cChHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChH
Q psy15672         10 ASRAWICYWICHSLSLLDE--PLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRP   87 (271)
Q Consensus        10 ~~~~~~~y~~l~~L~lL~~--~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~   87 (271)
                      .+|++-||++|++|.+++.  -++..+|+.+.+||..||+|||+|...-..+.|.+..|.|+.+|.++|.   ++..+.+
T Consensus       101 ~~hL~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~---~~~~~~e  177 (342)
T COG5029         101 DSHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGD---LDKELFE  177 (342)
T ss_pred             chhHHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhh---cchhhhH
Confidence            4689999999999999983  3566788899999999999999999877789999999999999999996   4567899


Q ss_pred             HHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhh-HHHHHHHHHHcccCCCCCCCCCCCCCchhhhhh
Q psy15672         88 KLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDL-FNNTREWLTACQTYEGGFSGYPGFEAHGGYTFC  166 (271)
Q Consensus        88 ~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~-~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~  166 (271)
                      .+++||++||+.||||+..|+.|+|..+||||+++|++++.++..+ ++++++||.++|-..|||++|+++.+|+||+||
T Consensus       178 ~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CYs~W  257 (342)
T COG5029         178 GAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTCYSFW  257 (342)
T ss_pred             HHHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcccccCCcCCCcccCccchhhhh
Confidence            9999999999999999999999999999999999999999877666 799999999999999999999999999999999


Q ss_pred             hhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHh
Q psy15672        167 GFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSL  227 (271)
Q Consensus       167 al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~  227 (271)
                      ++++|+++++...+|.+++.+||+.||++..|||+.||++.+|+.||.+.+++|++++..+
T Consensus       258 vlsSl~il~~~~~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D~yHt~~~lagLsl~~~k~  318 (342)
T COG5029         258 VLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSLIEYKY  318 (342)
T ss_pred             hcchHHhcchhhhcCHHHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHHHHHhccCC
Confidence            9999999999889999999999999988778999999999999999999999999998764

>KOG0366|consensus

Probab=100.00  E-value=2.4e-41  Score=283.08  Aligned_cols=213  Identities=23%  Similarity=0.322  Sum_probs=203.1

Q ss_pred             cChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHH
Q psy15672         10 ASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKL   89 (271)
Q Consensus        10 ~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~   89 (271)
                      .+|+.-|..+|+.|++.+. ++..+++++++||...|++||+|.+..+.+-+.+.+|+||++|.+||.   ++.++++++
T Consensus        92 d~hll~TlsAvQiL~~yds-i~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~---ld~~nve~a  167 (329)
T KOG0366|consen   92 DPHLLYTLSAVQILALYDS-INVLDRDKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGK---LDTINVEKA  167 (329)
T ss_pred             ChHHHHHHHHHHHHHHHcc-cccccHHHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhh---HHHhhHHHH
Confidence            3578889999999999986 466689999999999999999999999999999999999999999997   468899999


Q ss_pred             HHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhh
Q psy15672         90 KQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFA  169 (271)
Q Consensus        90 ~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~  169 (271)
                      ++|+.+|.|-||||+..|+.|+|....||.+.+|+++|.++..+.+.+-.||..+|.+.||.++||.+.+|+||+||+++
T Consensus       168 Vd~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWvls  247 (329)
T KOG0366|consen  168 VDFVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLS  247 (329)
T ss_pred             HHHHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCCCcccCcchhhHHHHHh
Confidence            99999999999999999999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             HHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHH
Q psy15672        170 ALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRS  226 (271)
Q Consensus       170 aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~  226 (271)
                      +|+++|+.+.+|.+++++||+.||....|||+.||+..+|+.||++.+|+|++|+..
T Consensus       248 SL~iigrl~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSLlg~~  304 (329)
T KOG0366|consen  248 SLAIIGRLHWIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSLLGYP  304 (329)
T ss_pred             HHHHhhhhhhccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhhhCCC
Confidence            999999999999999999999999976899999999999999999999999999875

>KOG0367|consensus

Probab=100.00  E-value=1.3e-40  Score=283.01  Aligned_cols=218  Identities=26%  Similarity=0.390  Sum_probs=204.6

Q ss_pred             cCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCC-CCCCCchHHHHHHHHHHHHhCCCCcCCcCC
Q psy15672          7 CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGG-PGQDPHIAATYAAVNCLIILGTPEAYNCIN   85 (271)
Q Consensus         7 ~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~-~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~   85 (271)
                      .++.+|++++|.++..|.+||.+++..+++.++++|..||.+||.|... .+.++|++..|+|+++..+|+.   .+.+|
T Consensus        99 ~~~~~~lA~Ty~sl~~L~~lGddLsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~---~s~iD  175 (347)
T KOG0367|consen   99 TYNEPHLAMTYTSLACLVILGDDLSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDF---WSGID  175 (347)
T ss_pred             CCcchhHHHHHHHHHHHHHHcchHhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhcc---ccccC
Confidence            6789999999999999999999999999999999999999999999864 4678999999999999999985   37899


Q ss_pred             hHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcC------ChhhHHHHHHHHHHcccCCCCCCCCCCCCC
Q psy15672         86 RPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVY------SEDLFNNTREWLTACQTYEGGFSGYPGFEA  159 (271)
Q Consensus        86 ~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~------~~~~~~~~~~~l~~~q~~dGGF~~~p~~es  159 (271)
                      .++++.||+++|+.||||+..|++|+|..+||||+++|++++.+      +...++++++|+..+|..+|||.+||++.+
T Consensus       176 ~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~NKp~  255 (347)
T KOG0367|consen  176 KEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTNKPV  255 (347)
T ss_pred             HHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCCCCc
Confidence            99999999999999999999999999999999999999999865      123479999999999999999999999999


Q ss_pred             chhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHh
Q psy15672        160 HGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSL  227 (271)
Q Consensus       160 ~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~  227 (271)
                      |+||+||..++|.+|+....+|..++..||+.+|.+..|||++.|+..||+.|||..+++|+++++..
T Consensus       256 DTCYaFWigasLklL~~~~~~d~~~lr~fll~~Q~~~iGGFsK~P~~~pD~~HsylG~~alal~ee~~  323 (347)
T KOG0367|consen  256 DTCYAFWIGASLKLLDADWLIDKQVLRKFLLSTQDKLIGGFSKWPEEDPDLLHSYLGLAALALLEEKG  323 (347)
T ss_pred             hhHHHHHHHHHHHHccchHhhhHHHHHHHHHHhhhhhcCcccCCCccCchHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999888999999999999999878999999999999999999999999999864

>KOG0365|consensus

Probab=100.00  E-value=1.2e-34  Score=251.04  Aligned_cols=214  Identities=21%  Similarity=0.258  Sum_probs=193.1

Q ss_pred             cChHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChH
Q psy15672         10 ASRAWICYWICHSLSLLDEP--LSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRP   87 (271)
Q Consensus        10 ~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~   87 (271)
                      ..|++-||.+|++|.+++.+  ++..+|+++.+||.++.++||||......+.|+++.|+|+.+-.+++-..   ..=-+
T Consensus       146 l~HLA~TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~---deL~e  222 (423)
T KOG0365|consen  146 LPHLAPTYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPM---DELFE  222 (423)
T ss_pred             chhhhHHHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCc---HHHHH
Confidence            46899999999999999985  45678999999999999999999998889999999999999999998641   11256


Q ss_pred             HHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHccc-CCCCCCCCCCCCCchhhhhh
Q psy15672         88 KLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQT-YEGGFSGYPGFEAHGGYTFC  166 (271)
Q Consensus        88 ~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~-~dGGF~~~p~~es~~~~T~~  166 (271)
                      .+.+||.+||+.+|||+..|+.|.|..+||||+++|.+|+..+..+.+++.+|..++|. .+|||.+|.|+-.|+||+||
T Consensus       223 G~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVDGCYSFW  302 (423)
T KOG0365|consen  223 GTLDWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVDGCYSFW  302 (423)
T ss_pred             HHHHHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhhhhhccccccccchhhhhHHHH
Confidence            79999999999999999999999999999999999999998888899999999999996 89999999999999999999


Q ss_pred             hhhHHHhhccCC----------ccCHHHHHHHHHh-ccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHh
Q psy15672        167 GFAALCLLKSEH----------LCDIKALLRWTTN-RQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSL  227 (271)
Q Consensus       167 al~aL~llg~~~----------~~~~~~~~~wl~~-~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~  227 (271)
                      .-|+..++....          ..|.+++.+||+- ||.+ .|||...|+|.+|..||.+++++|++.+++.
T Consensus       303 vga~~~il~~~~~~~~~s~~~~~F~~~~LqeYIL~CcQ~~-~GGlrDKP~K~~DfYHTCYcLsGLSiAq~y~  373 (423)
T KOG0365|consen  303 VGASAPILQAFYSSAGHSLEHLLFNKEALQEYILLCCQSP-SGGLRDKPGKPRDFYHTCYCLSGLSIAQHYS  373 (423)
T ss_pred             hcchHHHHHHHhcccccchhhhhcCHHHHHHHHHhhccCC-CCCccCCCCCCcchhhhhhHhcchhHHhhhc
Confidence            999999875421          3488999999986 4766 8999999999999999999999999888763

>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

Probab=99.97  E-value=1.1e-29  Score=222.74  Aligned_cols=249  Identities=31%  Similarity=0.454  Sum_probs=212.2

Q ss_pred             CccChHHHHHHHHHHHHHcCCC-----CChhhHHHHHHHHHhcCCCCCCCCCCCCC-CCchHHHHHHHHHHHHhCCCCcC
Q psy15672          8 LDASRAWICYWICHSLSLLDEP-----LSSADKSCVVNFLSQCQSPNGGFGGGPGQ-DPHIAATYAAVNCLIILGTPEAY   81 (271)
Q Consensus         8 ~d~~~~~~~y~~l~~L~lL~~~-----~~~~~~~~~i~~l~~~q~~dGGF~~~~~~-~~~~~~Ty~Av~~L~~lg~~~~~   81 (271)
                      ....+++.+++++.++..++..     .....++++++||.++|++||||+..++. .+++..|++++.+|..++.....
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~  101 (300)
T cd00688          22 LCGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAV  101 (300)
T ss_pred             CCcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCcccc
Confidence            3678999999999999999752     24567899999999999999999987665 78999999999999999863212


Q ss_pred             CcCChHHHHHHHHhhcCCCCCeecccC-------CCCChhHHHHHHHHHHHhCcCC-hhhHHHHHHHHHHcccCCCCCCC
Q psy15672         82 NCINRPKLKQFLQRLKAPDGGFHVHDG-------GEVDIRGVYCALCVALLTQVYS-EDLFNNTREWLTACQTYEGGFSG  153 (271)
Q Consensus        82 ~~~~~~~~~~~l~~~q~~dGgf~~~~~-------~e~d~~~ty~a~~~l~ll~~~~-~~~~~~~~~~l~~~q~~dGGF~~  153 (271)
                      ....++++++||.++|++||+|.....       ...++..|++++.+|.+++... .+.++++++||.++|+.||||  
T Consensus       102 ~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~~~~~~~~~~~l~~~q~~~g~~--  179 (300)
T cd00688         102 DRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGF--  179 (300)
T ss_pred             CHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhcCCCCc--
Confidence            334588999999999999999987543       3688999999999999998653 467899999999999999999  


Q ss_pred             CCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCC---CCCCCchhhhhhhhhHHHHHHHhhhc
Q psy15672        154 YPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRT---NKLVDGCYSFWQGGLFPLIYRSLMKA  230 (271)
Q Consensus       154 ~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~---~k~~D~cyt~w~~~~L~~l~~~~~~~  230 (271)
                      .+..+++...|+|++.+|..++.......+++++||+++|.+ +|||....   .+.+|+++++|++.+|..++..   .
T Consensus       180 ~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~-~g~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~---~  255 (300)
T cd00688         180 GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRP-DGGWGEGRDRTNKLSDSCYTEWAAYALLALGKL---G  255 (300)
T ss_pred             CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCC-CCCcCccccCCCCcCchHHHHHHHHHHHHHhhh---c
Confidence            677889999999999999999975445689999999999998 89998875   7899999999999999998763   0


Q ss_pred             CCCCCCCccccCHHHHHHHHHhhhCCCCCCcCCCCCCCCCC
Q psy15672        231 GDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKPENMVAS  271 (271)
Q Consensus       231 ~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~p~~~~d~  271 (271)
                              .....+++.+||+ ..|+.+|||..+|...+|.
T Consensus       256 --------~~~~~~~~~~~L~-~~q~~~G~w~~~~~~~~~~  287 (300)
T cd00688         256 --------DLEDAEKLVKWLL-SQQNEDGGFSSKPGKSYDT  287 (300)
T ss_pred             --------CcccHHHHHHHHH-hccCCCCCcCcCCCCCCcc
Confidence                    1246799999998 4899999999999887763

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.

>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

Probab=99.95  E-value=7.9e-26  Score=198.28  Aligned_cols=208  Identities=24%  Similarity=0.309  Sum_probs=182.9

Q ss_pred             cChHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCCCCCCCCCCCC-------CCchHHHHHHHHHHHHhCCCCc
Q psy15672         10 ASRAWICYWICHSLSLLDEP--LSSADKSCVVNFLSQCQSPNGGFGGGPGQ-------DPHIAATYAAVNCLIILGTPEA   80 (271)
Q Consensus        10 ~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~i~~l~~~q~~dGGF~~~~~~-------~~~~~~Ty~Av~~L~~lg~~~~   80 (271)
                      .+++|.++|++.+|..++..  .+...++++++||.++|++||||......       .+++..|++++.+|..++... 
T Consensus        79 ~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~-  157 (300)
T cd00688          79 YPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLD-  157 (300)
T ss_pred             CcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCC-
Confidence            67899999999999999874  45667899999999999999999865433       678999999999999998642 


Q ss_pred             CCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCC---CC
Q psy15672         81 YNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYP---GF  157 (271)
Q Consensus        81 ~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p---~~  157 (271)
                       ...+++++++||.++|++||+|  .++.+.|+..|++++.+|.+++......++++++||+++|..+|||...+   ..
T Consensus       158 -~~~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~  234 (300)
T cd00688         158 -PDPLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNK  234 (300)
T ss_pred             -CcHHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCCcCccccCCCC
Confidence             1346899999999999999999  56778999999999999999987555778999999999999999998775   67


Q ss_pred             CCchhhhhhhhhHHHhhccC-CccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHH
Q psy15672        158 EAHGGYTFCGFAALCLLKSE-HLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPL  222 (271)
Q Consensus       158 es~~~~T~~al~aL~llg~~-~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~  222 (271)
                      +++..+|++++.+|..++.. .....+++++||+++|.+ +|||.+++.+.+|+++|+|++.+|..
T Consensus       235 ~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~-~G~w~~~~~~~~~~~~t~~al~aL~~  299 (300)
T cd00688         235 LSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNE-DGGFSSKPGKSYDTQHTVFALLALSL  299 (300)
T ss_pred             cCchHHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccCC-CCCcCcCCCCCCcchhhHHHHHHHhc
Confidence            78999999999999999874 345789999999999987 89999999999999999999998864

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.89  E-value=1.5e-21  Score=177.25  Aligned_cols=240  Identities=15%  Similarity=0.130  Sum_probs=178.4

Q ss_pred             ChHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcC--------------CCCCCCCCCCC--CCCchHHHHHHHHHHH
Q psy15672         11 SRAWICYWICHSLSLLDE-PLSSADKSCVVNFLSQCQ--------------SPNGGFGGGPG--QDPHIAATYAAVNCLI   73 (271)
Q Consensus        11 ~~~~~~y~~l~~L~lL~~-~~~~~~~~~~i~~l~~~q--------------~~dGGF~~~~~--~~~~~~~Ty~Av~~L~   73 (271)
                      +.++.+.+++.+|...+. +-....++++++||.+.|              .++|||+....  ..++...|..++.+|.
T Consensus        23 ~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al~  102 (348)
T cd02889          23 SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALL  102 (348)
T ss_pred             CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCCCCCCCCChHHHHHHHH
Confidence            788999999999999886 223457899999999999              68999885432  2345568888888888


Q ss_pred             HhCCCC----cCCcCChHHHHHHHHhhcCCCCCeecccC-------------------CCCChhHHHHHHHHHHHhCcCC
Q psy15672         74 ILGTPE----AYNCINRPKLKQFLQRLKAPDGGFHVHDG-------------------GEVDIRGVYCALCVALLTQVYS  130 (271)
Q Consensus        74 ~lg~~~----~~~~~~~~~~~~~l~~~q~~dGgf~~~~~-------------------~e~d~~~ty~a~~~l~ll~~~~  130 (271)
                      .++...    ....-.++++++||.+.|++||+|.....                   ..++...|..++.+|..++...
T Consensus       103 ~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~  182 (348)
T cd02889         103 RLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLY  182 (348)
T ss_pred             HhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcC
Confidence            777531    01122367899999999999999974311                   1245566788888888777532


Q ss_pred             h-------hhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCC-ccCHHHHHHHHHhccCCCcCCcCC
Q psy15672        131 E-------DLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEH-LCDIKALLRWTTNRQMNFEGGFQG  202 (271)
Q Consensus       131 ~-------~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~-~~~~~~~~~wl~~~Q~~~~GGf~g  202 (271)
                      .       +.++++++||+++|+.||||....+ ..+...|++++.+|..+|... ...++++++||+++|.+ +|||..
T Consensus       183 ~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~~-~~~~y~ta~a~~aL~~~g~~~~~~~~~~~~~~L~~~Q~~-dG~w~~  260 (348)
T cd02889         183 PEHRREIDPAIRRAVKYLEREQEPDGSWYGRWG-VCFIYGTWFALEALAAAGEDENSPYVRKACDWLLSKQNP-DGGWGE  260 (348)
T ss_pred             CchHHHHHHHHHHHHHHHHHhCCCCCCccccCC-CcchHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCC-CCCcCC
Confidence            2       4678999999999999999964432 245556888999999988742 34578999999999998 899976


Q ss_pred             C----------CCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCCCC
Q psy15672        203 R----------TNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKP  265 (271)
Q Consensus       203 r----------~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~p  265 (271)
                      .          +...+|++.|.|++.+|...+..           + ....++..+||. .+|+++|||...+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~g~~-----------~-~~~v~~a~~wL~-~~Q~~dG~f~~~~  320 (348)
T cd02889         261 SYESYEDPSYAGGGRSTVVQTAWALLALMAAGEP-----------D-SEAVKRGVKYLL-NTQQEDGDWPQEE  320 (348)
T ss_pred             cccccccccccCCCCCcHHHHHHHHHHHHhcCCC-----------C-HHHHHHHHHHHH-HhcCCCCCcCCce
Confidence            3          23467889999998888775432           0 134577889988 6999999998743

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase

Probab=99.88  E-value=2.8e-21  Score=187.39  Aligned_cols=181  Identities=17%  Similarity=0.223  Sum_probs=143.8

Q ss_pred             CChhhHHHHHHHHHhcCCCCCCCCCCCC---------------------CCCchHHHHHHHHHHHHhCCCCcC---Cc--
Q psy15672         30 LSSADKSCVVNFLSQCQSPNGGFGGGPG---------------------QDPHIAATYAAVNCLIILGTPEAY---NC--   83 (271)
Q Consensus        30 ~~~~~~~~~i~~l~~~q~~dGGF~~~~~---------------------~~~~~~~Ty~Av~~L~~lg~~~~~---~~--   83 (271)
                      +++...+++++||+++|++||||+....                     ..+++..|..+|.+|..++.....   ..  
T Consensus       397 ~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~  476 (634)
T TIGR03463       397 VPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRIT  476 (634)
T ss_pred             ccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHH
Confidence            3445678899999999999999994321                     356788999999999988753110   01  


Q ss_pred             CChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcC-ChhhHHHHHHHHHHcccCCCCCCCC--------
Q psy15672         84 INRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVY-SEDLFNNTREWLTACQTYEGGFSGY--------  154 (271)
Q Consensus        84 ~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~-~~~~~~~~~~~l~~~q~~dGGF~~~--------  154 (271)
                      ..++++++||++.|++||+|... ++...+..|++++.+|..+|.. ..+.++++++||+++|++||||+..        
T Consensus       477 ~ai~rav~~L~~~Q~~dGsW~g~-Wg~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~  555 (634)
T TIGR03463       477 RAISRGVRFLRSRQREDGSFPGS-WGVCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQAR  555 (634)
T ss_pred             HHHHHHHHHHHHhcCCCCCcccc-CCCCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCcccccc
Confidence            12678999999999999999764 3456677899999999998863 4577999999999999999999753        


Q ss_pred             --CCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCC--CCCCCchh
Q psy15672        155 --PGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRT--NKLVDGCY  212 (271)
Q Consensus       155 --p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~--~k~~D~cy  212 (271)
                        ++.++++..|+|||.+|..+|..+...+++.++||+++|.+ +|||...+  +.++-.||
T Consensus       556 y~~~~~S~~~~TA~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~-dG~W~~~~~~G~f~~~~~  616 (634)
T TIGR03463       556 YVEGKQSQAVMTSWALLALAEAGEGGHDAVQRGVAWLRSRQQE-DGRWPREPINGVFFGTAM  616 (634)
T ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhCCC-CCCCCCCceeeeeCccee
Confidence              45578999999999999999976656789999999999998 89998654  44454444

This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.

>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C

Probab=99.86  E-value=7.8e-22  Score=150.70  Aligned_cols=109  Identities=30%  Similarity=0.545  Sum_probs=92.3

Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHH--HHHHHhhcCCCCCeeccc-CCCCChhH
Q psy15672         39 VNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKL--KQFLQRLKAPDGGFHVHD-GGEVDIRG  115 (271)
Q Consensus        39 i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~--~~~l~~~q~~dGgf~~~~-~~e~d~~~  115 (271)
                      |+||+++|++||||+.. +..+++..|++|+.+|..++..     .+++++  ++||.++|++||+|...+ +.+.|+..
T Consensus         1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~-----~~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~   74 (113)
T PF13249_consen    1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEE-----PDRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYT   74 (113)
T ss_dssp             HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSH-----HCHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHH
T ss_pred             CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCc-----ccHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHH
Confidence            68999999999999987 7889999999999999999963     258888  999999999999999887 45789999


Q ss_pred             HHHHHHHHHHhCcCCh-hhHHHHHHHHHHcccCCCCCCC
Q psy15672        116 VYCALCVALLTQVYSE-DLFNNTREWLTACQTYEGGFSG  153 (271)
Q Consensus       116 ty~a~~~l~ll~~~~~-~~~~~~~~~l~~~q~~dGGF~~  153 (271)
                      |++++.++.+++.... +.++++++||+++|++||||++
T Consensus        75 t~~~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~y  113 (113)
T PF13249_consen   75 TYVALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWGY  113 (113)
T ss_dssp             HHHHHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred             HHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCc
Confidence            9999999999986643 6789999999999999999974

...

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.85  E-value=5.5e-20  Score=179.26  Aligned_cols=242  Identities=14%  Similarity=0.091  Sum_probs=177.2

Q ss_pred             ccChHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCC--------------CCCCCCCC--CCCCCchHHHHHHHHH
Q psy15672          9 DASRAWICYWICHSLSLLDEP-LSSADKSCVVNFLSQCQS--------------PNGGFGGG--PGQDPHIAATYAAVNC   71 (271)
Q Consensus         9 d~~~~~~~y~~l~~L~lL~~~-~~~~~~~~~i~~l~~~q~--------------~dGGF~~~--~~~~~~~~~Ty~Av~~   71 (271)
                      +.+.+|-+-+++.+|.-.+.. -.....+++++||.++|.              +.|||+..  ....+++..|..++.+
T Consensus       304 ~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~A  383 (634)
T cd02892         304 NGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKA  383 (634)
T ss_pred             CCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHH
Confidence            467799999999999877753 234467899999999996              35777754  2334677789999999


Q ss_pred             HHHhCCCCc----CCcCChHHHHHHHHhhcCCCCCeecc-cC--------------------CCCChhHHHHHHHHHHHh
Q psy15672         72 LIILGTPEA----YNCINRPKLKQFLQRLKAPDGGFHVH-DG--------------------GEVDIRGVYCALCVALLT  126 (271)
Q Consensus        72 L~~lg~~~~----~~~~~~~~~~~~l~~~q~~dGgf~~~-~~--------------------~e~d~~~ty~a~~~l~ll  126 (271)
                      |..++....    ...-..+++++||.++|++||||... +.                    ..+.+..|..++.+|..+
T Consensus       384 L~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~  463 (634)
T cd02892         384 LLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLF  463 (634)
T ss_pred             HHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHh
Confidence            988875310    11123578999999999999999742 11                    023445688888888888


Q ss_pred             CcCCh-------hhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccC-C-ccCHHHHHHHHHhccCCCc
Q psy15672        127 QVYSE-------DLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSE-H-LCDIKALLRWTTNRQMNFE  197 (271)
Q Consensus       127 ~~~~~-------~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~-~-~~~~~~~~~wl~~~Q~~~~  197 (271)
                      +...+       +.++++++||+++|++||||.++-+ ......|++++.+|..+|.. . ...++++++||+++|++ +
T Consensus       464 ~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~-D  541 (634)
T cd02892         464 GKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRWG-VCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNP-D  541 (634)
T ss_pred             cccCcchHHHHHHHHHHHHHHHHHccCCCCCccccCC-CccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCC-C
Confidence            65432       3688999999999999999965443 34555688899999999875 2 34678999999999998 8


Q ss_pred             CCcCCCC----------CCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCCCC
Q psy15672        198 GGFQGRT----------NKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKP  265 (271)
Q Consensus       198 GGf~gr~----------~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~p  265 (271)
                      |||...+          ...+++..|-|++.+|...+..           + ....++..+||+ .+|+++|||....
T Consensus       542 GgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~-----------~-~~~i~r~i~wL~-~~Q~~~G~w~~~~  606 (634)
T cd02892         542 GGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAAGEP-----------D-SEAVERGIKYLL-NTQLPDGDWPQEE  606 (634)
T ss_pred             CCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHcCCC-----------C-hHHHHHHHHHHH-HcCCCCCCCCCcc
Confidence            9997432          2346678888888777665432           1 134677899988 5899999997643

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.

>TIGR01507 hopene_cyclase squalene-hopene cyclase

Probab=99.85  E-value=3.5e-20  Score=179.68  Aligned_cols=190  Identities=18%  Similarity=0.217  Sum_probs=148.7

Q ss_pred             cChHHHHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCCCCCCCCCCCC-------------------CCCchHHHHH
Q psy15672         10 ASRAWICYWICHSLSLLDEP---LSSADKSCVVNFLSQCQSPNGGFGGGPG-------------------QDPHIAATYA   67 (271)
Q Consensus        10 ~~~~~~~y~~l~~L~lL~~~---~~~~~~~~~i~~l~~~q~~dGGF~~~~~-------------------~~~~~~~Ty~   67 (271)
                      .+.++.|-.+|.+|..++.+   ..+...+++++||+++|++||||+....                   +.+++..|-.
T Consensus       377 ~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~  456 (635)
T TIGR01507       377 YPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTAR  456 (635)
T ss_pred             CCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHH
Confidence            46778888899999887521   2235788999999999999999975321                   2356677889


Q ss_pred             HHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcC-ChhhHHHHHHHHHHccc
Q psy15672         68 AVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVY-SEDLFNNTREWLTACQT  146 (271)
Q Consensus        68 Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~-~~~~~~~~~~~l~~~q~  146 (271)
                      ++.+|...+...  ....++++++||.+.|++||+|... ++..++..|..++.+|...|.. ..+.++++++||+++|+
T Consensus       457 ~l~al~~~g~~~--~~~~i~rav~~L~~~Q~~dG~W~g~-wg~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~  533 (635)
T TIGR01507       457 VLECLGSFGYDD--AWPVIERAVEYLKREQEPDGSWFGR-WGVNYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQN  533 (635)
T ss_pred             HHHHHHHhCCCc--hhHHHHHHHHHHHHccCCCCCCccC-CCCccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcC
Confidence            999998887532  2334788999999999999998544 3445566666777777777653 34678999999999999


Q ss_pred             CCCCCCCC----------CCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCC
Q psy15672        147 YEGGFSGY----------PGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGR  203 (271)
Q Consensus       147 ~dGGF~~~----------p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr  203 (271)
                      +||||+..          +.++++...|.|||.+|...+..+...+++.++||.++|++ +|||.-.
T Consensus       534 ~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~~~~~I~rav~~L~~~Q~~-dG~W~e~  599 (635)
T TIGR01507       534 PDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRAESEAARRGVQYLVETQRP-DGGWDEP  599 (635)
T ss_pred             CCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC-CCCCCCc
Confidence            99999853          23468999999999999999976655789999999999998 8998754

SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.

>TIGR01507 hopene_cyclase squalene-hopene cyclase

Probab=99.85  E-value=1.5e-19  Score=175.34  Aligned_cols=240  Identities=17%  Similarity=0.099  Sum_probs=174.8

Q ss_pred             cChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-------------CCCCCCCC--CCCCCchHHHHHHHHHHHH
Q psy15672         10 ASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQS-------------PNGGFGGG--PGQDPHIAATYAAVNCLII   74 (271)
Q Consensus        10 ~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~-------------~dGGF~~~--~~~~~~~~~Ty~Av~~L~~   74 (271)
                      .+.+|-|-+++.+|...|..-+....+++.+||+++|.             +.|||+..  +...|++..|..++.+|..
T Consensus       313 ~s~vWDTa~ai~AL~~ag~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~  392 (635)
T TIGR01507       313 VSPVWDTALAVLALREAGLPADHDALVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNG  392 (635)
T ss_pred             CCcHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHH
Confidence            56889999999999988853334468899999999983             24888765  3346899999999999988


Q ss_pred             hCCCC-cCCcCChHHHHHHHHhhcCCCCCeecccC-------------------CCCChhHHHHHHHHHHHhCcC-Chhh
Q psy15672         75 LGTPE-AYNCINRPKLKQFLQRLKAPDGGFHVHDG-------------------GEVDIRGVYCALCVALLTQVY-SEDL  133 (271)
Q Consensus        75 lg~~~-~~~~~~~~~~~~~l~~~q~~dGgf~~~~~-------------------~e~d~~~ty~a~~~l~ll~~~-~~~~  133 (271)
                      ++..+ .......+++++||.++|++||||.....                   ..++.-.|-.++.+|...+.. ....
T Consensus       393 ~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~~~~  472 (635)
T TIGR01507       393 LRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDAWPV  472 (635)
T ss_pred             cCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCchhHH
Confidence            76321 11123578899999999999999964211                   012333455566666665532 2467


Q ss_pred             HHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCC-ccCHHHHHHHHHhccCCCcCCcCCCC--------
Q psy15672        134 FNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEH-LCDIKALLRWTTNRQMNFEGGFQGRT--------  204 (271)
Q Consensus       134 ~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~-~~~~~~~~~wl~~~Q~~~~GGf~gr~--------  204 (271)
                      ++++++||++.|++||||-++-+ ..+...|..++.+|...|... ...++++++||+++|++ +|||....        
T Consensus       473 i~rav~~L~~~Q~~dG~W~g~wg-~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~~-DGGWge~~~sy~~~~~  550 (635)
T TIGR01507       473 IERAVEYLKREQEPDGSWFGRWG-VNYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQNP-DGGWGEDCRSYEDPAY  550 (635)
T ss_pred             HHHHHHHHHHccCCCCCCccCCC-CccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCC-CCCCCCCCcccccccc
Confidence            89999999999999999743433 234445778888888877632 23578999999999998 89997421        


Q ss_pred             --CCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCCC
Q psy15672        205 --NKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDK  264 (271)
Q Consensus       205 --~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~  264 (271)
                        ...+|+-.|.|++.+|...+...            ....++..+||+ .+|+++|||...
T Consensus       551 ~g~g~s~~s~TA~AL~AL~~ag~~~------------~~~I~rav~~L~-~~Q~~dG~W~e~  599 (635)
T TIGR01507       551 AGKGASTASQTAWALIALIAAGRAE------------SEAARRGVQYLV-ETQRPDGGWDEP  599 (635)
T ss_pred             cCCCCCcHHHHHHHHHHHHHhCCCC------------cHHHHHHHHHHH-HhcCCCCCCCCc
Confidence              13578889999999998876431            124578889998 599999999764

SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.84  E-value=3.5e-20  Score=180.64  Aligned_cols=190  Identities=19%  Similarity=0.179  Sum_probs=148.1

Q ss_pred             hHHHHHHHHHHHHHcCCC------CChhhHHHHHHHHHhcCCCCCCCCCCCC---------------------CCCchHH
Q psy15672         12 RAWICYWICHSLSLLDEP------LSSADKSCVVNFLSQCQSPNGGFGGGPG---------------------QDPHIAA   64 (271)
Q Consensus        12 ~~~~~y~~l~~L~lL~~~------~~~~~~~~~i~~l~~~q~~dGGF~~~~~---------------------~~~~~~~   64 (271)
                      ..-.|-.+|.+|..++..      ++....+++++||+++|++||||.....                     ..+++..
T Consensus       373 d~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~  452 (634)
T cd02892         373 DSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVEC  452 (634)
T ss_pred             CcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcch
Confidence            344678888888888753      3345678899999999999999984311                     1356778


Q ss_pred             HHHHHHHHHHhCCCCcCC--c--CChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcC--ChhhHHHHH
Q psy15672         65 TYAAVNCLIILGTPEAYN--C--INRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVY--SEDLFNNTR  138 (271)
Q Consensus        65 Ty~Av~~L~~lg~~~~~~--~--~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~--~~~~~~~~~  138 (271)
                      |..++.+|..++......  .  ..++++++||++.|++||+|... .+...+..|+.++.+|..+|..  ..+.+++++
T Consensus       453 Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~-wg~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~  531 (634)
T cd02892         453 TGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGR-WGVCYIYGTWFALEALAAAGEDYENSPYIRKAC  531 (634)
T ss_pred             HHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCcccc-CCCccHHHHHHHHHHHHHhCCcccCcHHHHHHH
Confidence            999999999998642100  0  13778999999999999999654 3445566677788888888754  346789999


Q ss_pred             HHHHHcccCCCCCCCC----------CCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCC
Q psy15672        139 EWLTACQTYEGGFSGY----------PGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGR  203 (271)
Q Consensus       139 ~~l~~~q~~dGGF~~~----------p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr  203 (271)
                      +||+++|++||||+..          ++.++++..|.|||.+|..+|..+...++++++||+++|.+ +|+|...
T Consensus       532 ~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~~~~~i~r~i~wL~~~Q~~-~G~w~~~  605 (634)
T cd02892         532 DFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAAGEPDSEAVERGIKYLLNTQLP-DGDWPQE  605 (634)
T ss_pred             HHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHcCCC-CCCCCCc
Confidence            9999999999999853          23568889999999999999886656789999999999998 8999763

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase

Probab=99.84  E-value=1.2e-19  Score=176.04  Aligned_cols=239  Identities=16%  Similarity=0.143  Sum_probs=171.1

Q ss_pred             hHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCC--------------CCCCCCCCC--CCCCchHHHHHHHHHHH
Q psy15672         12 RAWICYWICHSLSLLDEPL--SSADKSCVVNFLSQCQS--------------PNGGFGGGP--GQDPHIAATYAAVNCLI   73 (271)
Q Consensus        12 ~~~~~y~~l~~L~lL~~~~--~~~~~~~~i~~l~~~q~--------------~dGGF~~~~--~~~~~~~~Ty~Av~~L~   73 (271)
                      ..|-|-+++.+|.--+..-  .....+++++||+++|.              +.|||+...  ...++...|..++.+|.
T Consensus       305 ~~WDTala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~  384 (634)
T TIGR03463       305 SEWDTAFAVQALAATPETAGRHRRMLERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSASL  384 (634)
T ss_pred             CchhHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCCccccHHHHHHHHH
Confidence            3499999999997765311  12356889999999995              458888753  34567778888888876


Q ss_pred             HhCC---C--CcCCcCChHHHHHHHHhhcCCCCCeecccC---------------------CCCChhHHHHHHHHHHHhC
Q psy15672         74 ILGT---P--EAYNCINRPKLKQFLQRLKAPDGGFHVHDG---------------------GEVDIRGVYCALCVALLTQ  127 (271)
Q Consensus        74 ~lg~---~--~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~---------------------~e~d~~~ty~a~~~l~ll~  127 (271)
                      .+..   .  +.......+++++||+++|++||||.....                     +.+.+-.|-.++.+|..++
T Consensus       385 ~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~  464 (634)
T TIGR03463       385 VLEPLGLNPEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWR  464 (634)
T ss_pred             HHhhcCCcccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHh
Confidence            6432   1  001112356799999999999999994321                     1233445556666666654


Q ss_pred             cCC--------hhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccC-CccCHHHHHHHHHhccCCCcC
Q psy15672        128 VYS--------EDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSE-HLCDIKALLRWTTNRQMNFEG  198 (271)
Q Consensus       128 ~~~--------~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~-~~~~~~~~~~wl~~~Q~~~~G  198 (271)
                      ...        ...++++++||++.|++||||.++-+ ......|++|+.+|..+|.. ....++++++||+++|++ +|
T Consensus       465 ~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg-~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~-DG  542 (634)
T TIGR03463       465 KHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWG-VCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRA-DG  542 (634)
T ss_pred             hcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCC-CCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCC-CC
Confidence            322        23578999999999999999976533 23444589999999999874 334578999999999998 89


Q ss_pred             CcCCCC----------CCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCCCC
Q psy15672        199 GFQGRT----------NKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKP  265 (271)
Q Consensus       199 Gf~gr~----------~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~p  265 (271)
                      ||.++.          +..+.+..|.|++.+|...+...            ....++..+||+ ..|+++|||...+
T Consensus       543 gWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g~~~------------~~~i~rgi~~L~-~~Q~~dG~W~~~~  606 (634)
T TIGR03463       543 GWGEVYESCLQARYVEGKQSQAVMTSWALLALAEAGEGG------------HDAVQRGVAWLR-SRQQEDGRWPREP  606 (634)
T ss_pred             CccCccCccccccccCCCCCcHHHHHHHHHHHHHcCCcC------------CHHHHHHHHHHH-HhCCCCCCCCCCc
Confidence            997642          33577888999999998876421            123577889998 5899999997754

This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.84  E-value=9.3e-20  Score=165.58  Aligned_cols=211  Identities=20%  Similarity=0.211  Sum_probs=148.8

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhc--------------CCCC
Q psy15672         36 SCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLK--------------APDG  101 (271)
Q Consensus        36 ~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q--------------~~dG  101 (271)
                      ++.++||.+.|++||||...+   +++..|..++.+|...|.... ....++++++||.+.|              .++|
T Consensus         2 ~~~~~~L~~~Q~~dG~W~~~~---~~~~~Ta~~~~al~~~g~~~~-~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~G   77 (348)
T cd02889           2 RRALDFLLSLQAPDGHWPGEY---SQVWDTALALQALLEAGLAPE-FDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKG   77 (348)
T ss_pred             chHHHHHHHhccCCCCccccC---CchHHHHHHHHHHHHcCCCCc-cCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCC
Confidence            578999999999999998764   889999999999999886211 2234789999999999              7899


Q ss_pred             CeecccC--CCCChhHHHHHHHHHHHhCcC-------ChhhHHHHHHHHHHcccCCCCCCCC-CC---------------
Q psy15672        102 GFHVHDG--GEVDIRGVYCALCVALLTQVY-------SEDLFNNTREWLTACQTYEGGFSGY-PG---------------  156 (271)
Q Consensus       102 gf~~~~~--~e~d~~~ty~a~~~l~ll~~~-------~~~~~~~~~~~l~~~q~~dGGF~~~-p~---------------  156 (271)
                      ||.....  +..|...|-.++.+|..++..       ....++++++||+++|+.||||... +.               
T Consensus        78 gw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~  157 (348)
T cd02889          78 GWAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGD  157 (348)
T ss_pred             cCcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcC
Confidence            9986432  123332333444444444322       3467889999999999999999742 21               


Q ss_pred             ---CCCchhhhhhhhhHHHhhccCCc-------cCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHH
Q psy15672        157 ---FEAHGGYTFCGFAALCLLKSEHL-------CDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRS  226 (271)
Q Consensus       157 ---~es~~~~T~~al~aL~llg~~~~-------~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~  226 (271)
                         ..++...|..+|.+|..++....       ..+++.++||...|.+ +|||.++.+. ..+..+.+++.+|...+..
T Consensus       158 ~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~-dG~w~~~~~~-~~~y~ta~a~~aL~~~g~~  235 (348)
T cd02889         158 IMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEP-DGSWYGRWGV-CFIYGTWFALEALAAAGED  235 (348)
T ss_pred             CccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCC-CCCccccCCC-cchHHHHHHHHHHHHcCCC
Confidence               12456679999999999987532       2367899999999998 8999765432 2233344555555554321


Q ss_pred             hhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCCC
Q psy15672        227 LMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDK  264 (271)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~  264 (271)
                                 .+....++..+||+ .+|+++|||...
T Consensus       236 -----------~~~~~~~~~~~~L~-~~Q~~dG~w~~~  261 (348)
T cd02889         236 -----------ENSPYVRKACDWLL-SKQNPDGGWGES  261 (348)
T ss_pred             -----------cCcHHHHHHHHHHH-HccCCCCCcCCc
Confidence                       01245678889998 599999999764

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.

>PLN02993 lupeol synthase

Probab=99.84  E-value=7.2e-20  Score=178.15  Aligned_cols=199  Identities=18%  Similarity=0.177  Sum_probs=149.0

Q ss_pred             hHHHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCCCCCCCCCCCC---------------------CCCchHHH
Q psy15672         12 RAWICYWICHSLSLLD-----EPLSSADKSCVVNFLSQCQSPNGGFGGGPG---------------------QDPHIAAT   65 (271)
Q Consensus        12 ~~~~~y~~l~~L~lL~-----~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~---------------------~~~~~~~T   65 (271)
                      ..+..--++..|..+.     ..++++...++++||+++||+||||+....                     ..+.+..|
T Consensus       487 dTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT  566 (763)
T PLN02993        487 CTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECT  566 (763)
T ss_pred             chHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHH
Confidence            3344444444555443     233445678899999999999999986431                     14667789


Q ss_pred             HHHHHHHHHhCCCCc-C--Cc--CChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCC--hhhHHHHH
Q psy15672         66 YAAVNCLIILGTPEA-Y--NC--INRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYS--EDLFNNTR  138 (271)
Q Consensus        66 y~Av~~L~~lg~~~~-~--~~--~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~--~~~~~~~~  138 (271)
                      -.+|.+|.+++.... .  ..  ..++++++||++.|++||||... ++...+..|++|+.+|...|...  .+.+++++
T Consensus       567 ~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~-Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv  645 (763)
T PLN02993        567 SAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGN-WGICFIYATWFALGGLAAAGKTYNDCLAMRKGV  645 (763)
T ss_pred             HHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccc-cccccCcHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence            999999999874210 1  11  23678999999999999999864 55677778999999998888652  36799999


Q ss_pred             HHHHHcccCCCCCCCCC------------CCCCchhhhhhhhhHHHhhccCCc--cCHHHHHHHHHhccCCCcCCcCCC-
Q psy15672        139 EWLTACQTYEGGFSGYP------------GFEAHGGYTFCGFAALCLLKSEHL--CDIKALLRWTTNRQMNFEGGFQGR-  203 (271)
Q Consensus       139 ~~l~~~q~~dGGF~~~p------------~~es~~~~T~~al~aL~llg~~~~--~~~~~~~~wl~~~Q~~~~GGf~gr-  203 (271)
                      +||+++|++||||+..-            +..|++..|.||+.+|...|..+.  ..+++.++||+++|.+ +|+|.-. 
T Consensus       646 ~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~-~G~W~q~~  724 (763)
T PLN02993        646 HFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLE-NGDFPQQE  724 (763)
T ss_pred             HHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCC-CCCCCCcc
Confidence            99999999999998642            245888999999999999997543  2478999999999998 7887643 


Q ss_pred             -CCCCCCchh
Q psy15672        204 -TNKLVDGCY  212 (271)
Q Consensus       204 -~~k~~D~cy  212 (271)
                       .+.++-.||
T Consensus       725 ~~G~F~~~~~  734 (763)
T PLN02993        725 ILGAFMNTCM  734 (763)
T ss_pred             eeceECccce
Confidence             334555554

>PLN03012 Camelliol C synthase

Probab=99.84  E-value=8.6e-20  Score=177.30  Aligned_cols=182  Identities=18%  Similarity=0.187  Sum_probs=137.7

Q ss_pred             CCChhhHHHHHHHHHhcCCCCCCCCCCCC---------------------CCCchHHHHHHHHHHHHhCCCCcC---C--
Q psy15672         29 PLSSADKSCVVNFLSQCQSPNGGFGGGPG---------------------QDPHIAATYAAVNCLIILGTPEAY---N--   82 (271)
Q Consensus        29 ~~~~~~~~~~i~~l~~~q~~dGGF~~~~~---------------------~~~~~~~Ty~Av~~L~~lg~~~~~---~--   82 (271)
                      .++++...++++||+++|++||||+....                     ..+....|-.+|.+|.+++.....   .  
T Consensus       509 ~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i  588 (759)
T PLN03012        509 KMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEI  588 (759)
T ss_pred             cccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhh
Confidence            34556778899999999999999975432                     245566788899999888752110   1  


Q ss_pred             cCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcC--ChhhHHHHHHHHHHcccCCCCCCCCC-----
Q psy15672         83 CINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVY--SEDLFNNTREWLTACQTYEGGFSGYP-----  155 (271)
Q Consensus        83 ~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~--~~~~~~~~~~~l~~~q~~dGGF~~~p-----  155 (271)
                      ...++++++||++.|++||||....+. ..+..|..|+.+|...|..  +.+.++++++||++.|++||||++.-     
T Consensus       589 ~~~i~rAv~~L~~~Q~~DGsW~G~Wgv-~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~  667 (759)
T PLN03012        589 NAFIKKAAEYIENIQMLDGSWYGNWGI-CFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPK  667 (759)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCcccccc-cCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCC
Confidence            123678999999999999999876432 3344677788888888763  33679999999999999999999742     


Q ss_pred             -------CCCCchhhhhhhhhHHHhhccCCc--cCHHHHHHHHHhccCCCcCCcCCC--CCCCCCchh
Q psy15672        156 -------GFEAHGGYTFCGFAALCLLKSEHL--CDIKALLRWTTNRQMNFEGGFQGR--TNKLVDGCY  212 (271)
Q Consensus       156 -------~~es~~~~T~~al~aL~llg~~~~--~~~~~~~~wl~~~Q~~~~GGf~gr--~~k~~D~cy  212 (271)
                             +..|++..|+||+.+|...|..+.  ..+++.++||+++|.+ +|+|.-.  .+.++-.||
T Consensus       668 ~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~-dG~W~q~~~~G~F~~~~~  734 (759)
T PLN03012        668 KIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLE-NGDFPQQEATGAFLKNCL  734 (759)
T ss_pred             ccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccC-CCCCCCceeeeeeccceE
Confidence                   235899999999999999998543  2479999999999998 8998743  233444444

>COG1689 Uncharacterized protein conserved in archaea [Function unknown]

Probab=99.83  E-value=9.5e-20  Score=149.60  Aligned_cols=204  Identities=16%  Similarity=0.156  Sum_probs=156.8

Q ss_pred             hhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhh-cCCCCCeecc----
Q psy15672         32 SADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRL-KAPDGGFHVH----  106 (271)
Q Consensus        32 ~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~-q~~dGgf~~~----  106 (271)
                      ..+++++++||..+|++||||+.....+..+..||+||.++.+||.    +.+.+|+.++||.++ |..-+++...    
T Consensus         5 ~i~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~----evPr~EktiefL~d~~qt~~~~~a~~~~~l   80 (274)
T COG1689           5 YINLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGH----EVPRKEKTIEFLYDQMQTAGVGVAMAIEFL   80 (274)
T ss_pred             hhhHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCC----cCchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            4578999999999999999999876655557999999999999996    477899999999994 4444444321    


Q ss_pred             ------------------------------cC------CCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCC
Q psy15672        107 ------------------------------DG------GEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGG  150 (271)
Q Consensus       107 ------------------------------~~------~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGG  150 (271)
                                                    .+      ....++.||++..+|.+.|..   ..+...+||++.|+.+|+
T Consensus        81 ~~lg~~d~~r~~~~l~~~~~~~~e~Kf~~~lggs~~f~t~~~Le~ty~~~~~l~~~n~~---~~eE~k~~v~~~~re~~~  157 (274)
T COG1689          81 RILGAKDLARNKMLLLFLKYNPLEEKFAVGLGGSEEFGTATPLEATYWMMSALNMVNYE---YLEEMKEKVIEFVREFGI  157 (274)
T ss_pred             HHhcccccchhhHHHHHhhcCchhHHHhhhcCceeecCCCchHHHHHHHHHHHHHhCcC---chHHHHHHHHHHhhhhcc
Confidence                                          01      123478999999999999843   355666788888888877


Q ss_pred             CCCCCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCC-CCchhhhhhhhhHHHHHHHhhh
Q psy15672        151 FSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKL-VDGCYSFWQGGLFPLIYRSLMK  229 (271)
Q Consensus       151 F~~~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~-~D~cyt~w~~~~L~~l~~~~~~  229 (271)
                      +.+---..+....||.|+-.|...+.     .+.+..|=+.|-.  .|||+..|+.. |-.--||+++.+|.+|+..   
T Consensus       158 g~~YGv~~pnt~~t~~aly~l~~k~~-----~~~v~~Fe~~c~~--~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k---  227 (274)
T COG1689         158 GDAYGVTHPNTTMTYQALYTLGSKGP-----KEEVRHFELCCGD--WGGFTEVPNSYPPYIEPTFYALRGLELLGGK---  227 (274)
T ss_pred             ccccccCCcchHHHHHHHHhhccccc-----hHHHHhHHhcccc--CCCcccCCCCCCCccchHHHHHhHHHHHccC---
Confidence            76544444666788888777666654     3466777777643  69999999984 6688999999999999875   


Q ss_pred             cCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCCC
Q psy15672        230 AGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDK  264 (271)
Q Consensus       230 ~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~  264 (271)
                                 .-..+..+||. +.||++||||+.
T Consensus       228 -----------~~i~~~~rFI~-slqN~nGGFRRS  250 (274)
T COG1689         228 -----------YCISDHIRFIR-SLQNQNGGFRRS  250 (274)
T ss_pred             -----------cCchHHHHHHH-HhhcCCCCeeee
Confidence                       23467889999 699999999974

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases

Probab=99.83  E-value=3.7e-19  Score=172.41  Aligned_cols=241  Identities=15%  Similarity=0.112  Sum_probs=172.8

Q ss_pred             cChHHHHHHHHHHHHHcCC---CCChhhHHHHHHHHHhcCCCC---------------CCCCCCC--CCCCchHHHHHHH
Q psy15672         10 ASRAWICYWICHSLSLLDE---PLSSADKSCVVNFLSQCQSPN---------------GGFGGGP--GQDPHIAATYAAV   69 (271)
Q Consensus        10 ~~~~~~~y~~l~~L~lL~~---~~~~~~~~~~i~~l~~~q~~d---------------GGF~~~~--~~~~~~~~Ty~Av   69 (271)
                      .+.+|-|-+++.+|.--|.   +-.....+++++||.++|..+               |||+...  ...|++..|-.++
T Consensus       293 ~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~  372 (621)
T TIGR01787       293 GSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVA  372 (621)
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHH
Confidence            7789999999999977662   222346889999999999877               6766432  3346777777777


Q ss_pred             HHHHHhCCC-CcCCcCChHHHHHHHHhhcCCCCCeecccC-C--------------------CCChhHHHHHHHHHHHhC
Q psy15672         70 NCLIILGTP-EAYNCINRPKLKQFLQRLKAPDGGFHVHDG-G--------------------EVDIRGVYCALCVALLTQ  127 (271)
Q Consensus        70 ~~L~~lg~~-~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~-~--------------------e~d~~~ty~a~~~l~ll~  127 (271)
                      .++.++... +.......+++++||.++|++||||....- .                    .+....|..++.+|...+
T Consensus       373 la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~  452 (621)
T TIGR01787       373 LKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFG  452 (621)
T ss_pred             HHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhc
Confidence            666555432 111222356899999999999999984311 0                    111235777777777765


Q ss_pred             cC---ChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCc--cCHHHHHHHHHhccCCCcCCcCC
Q psy15672        128 VY---SEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHL--CDIKALLRWTTNRQMNFEGGFQG  202 (271)
Q Consensus       128 ~~---~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~--~~~~~~~~wl~~~Q~~~~GGf~g  202 (271)
                      ..   ....++++++||+++|++||+|.++-+. .....|.+++.+|..+|....  ..++++++||+++|++ +|||..
T Consensus       453 ~r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg~-~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~-DGGWge  530 (621)
T TIGR01787       453 HRADEIRNVLERALEYLRREQRADGSWFGRWGV-NYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMP-DGGWGE  530 (621)
T ss_pred             CccHhHHHHHHHHHHHHHHhcCCCCCCcccCCC-CCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCC-CCCCCc
Confidence            32   1357899999999999999998765432 233458889999999987532  3478999999999998 899975


Q ss_pred             CC----------CCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCCCC
Q psy15672        203 RT----------NKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKP  265 (271)
Q Consensus       203 r~----------~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~p  265 (271)
                      ..          ...+|+..|.|++.+|...+...            ....++..+||+ .+|+++|||...+
T Consensus       531 ~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ag~~~------------~~ai~rgv~~L~-~~Q~~dG~w~~~~  590 (621)
T TIGR01787       531 DCFSYEDPSYVGSGGSTPSQTGWALMALIAAGEAD------------SEAIERGVKYLL-ETQRPDGDWPQEY  590 (621)
T ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHcCccc------------hHHHHHHHHHHH-HhCCCCCCCCCcc
Confidence            32          13578999999999987765321            124578899998 5999999997643

This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases

Probab=99.80  E-value=1.1e-18  Score=169.13  Aligned_cols=173  Identities=17%  Similarity=0.150  Sum_probs=132.9

Q ss_pred             CChhhHHHHHHHHHhcCCCCCCCCCCCC---------------------CCCchHHHHHHHHHHHHhCCCCcCCcCChHH
Q psy15672         30 LSSADKSCVVNFLSQCQSPNGGFGGGPG---------------------QDPHIAATYAAVNCLIILGTPEAYNCINRPK   88 (271)
Q Consensus        30 ~~~~~~~~~i~~l~~~q~~dGGF~~~~~---------------------~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~   88 (271)
                      .++...+++++||.++|++||||+....                     ..+....|..++++|..++.........+++
T Consensus       385 ~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~r  464 (621)
T TIGR01787       385 VKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLER  464 (621)
T ss_pred             ccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHH
Confidence            4556778899999999999999985321                     1233458999999998887421000124789


Q ss_pred             HHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCC--hhhHHHHHHHHHHcccCCCCCCCCC----------C
Q psy15672         89 LKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYS--EDLFNNTREWLTACQTYEGGFSGYP----------G  156 (271)
Q Consensus        89 ~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~--~~~~~~~~~~l~~~q~~dGGF~~~p----------~  156 (271)
                      +++||.+.|++||+|.... +...+..|..++.+|..+|...  .+.++++++||+++|+.||||+...          .
T Consensus       465 Al~~L~~~Q~~DGsw~g~w-g~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~  543 (621)
T TIGR01787       465 ALEYLRREQRADGSWFGRW-GVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGS  543 (621)
T ss_pred             HHHHHHHhcCCCCCCcccC-CCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCC
Confidence            9999999999999997543 3344455667777788777542  2678999999999999999998542          2


Q ss_pred             CCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCC
Q psy15672        157 FEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRT  204 (271)
Q Consensus       157 ~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~  204 (271)
                      .++++..|.|||.+|...+......+++.++||.++|.+ +|||....
T Consensus       544 ~~S~~s~Ta~AL~AL~~ag~~~~~ai~rgv~~L~~~Q~~-dG~w~~~~  590 (621)
T TIGR01787       544 GGSTPSQTGWALMALIAAGEADSEAIERGVKYLLETQRP-DGDWPQEY  590 (621)
T ss_pred             CCCCHHHHHHHHHHHHHcCccchHHHHHHHHHHHHhCCC-CCCCCCcc
Confidence            468999999999999998876555689999999999998 89997543

This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.

>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C

Probab=99.79  E-value=2.5e-19  Score=136.78  Aligned_cols=109  Identities=25%  Similarity=0.335  Sum_probs=91.1

Q ss_pred             HHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHH--HHHHHHcccCCCCCCCCCC-CCCchhhhhh
Q psy15672         90 KQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNT--REWLTACQTYEGGFSGYPG-FEAHGGYTFC  166 (271)
Q Consensus        90 ~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~--~~~l~~~q~~dGGF~~~p~-~es~~~~T~~  166 (271)
                      |+||+++|++||||... +.++++..|++|+.+|..++...  +.+++  ++||+++|++||||+..|. .+++..+|++
T Consensus         1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~   77 (113)
T PF13249_consen    1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV   77 (113)
T ss_dssp             HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred             CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence            68999999999999987 77899999999999999998643  47778  9999999999999999984 5678999999


Q ss_pred             hhhHHHhhccCCc-cCHHHHHHHHHhccCCCcCCcCC
Q psy15672        167 GFAALCLLKSEHL-CDIKALLRWTTNRQMNFEGGFQG  202 (271)
Q Consensus       167 al~aL~llg~~~~-~~~~~~~~wl~~~Q~~~~GGf~g  202 (271)
                      ++++|.+++.... ..++++++||+++|++ +|||+.
T Consensus        78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~-dGg~~y  113 (113)
T PF13249_consen   78 ALAALELLGRPDDEEAVRKAVDWLLSCQNP-DGGWGY  113 (113)
T ss_dssp             HHHHHHHHT-GGCHTTHCCHHHHHHHTB-T-TSSB-S
T ss_pred             HHHHHHHcCCCcccHHHHHHHHHHHHhcCC-CCCCCc
Confidence            9999999998753 5688999999999998 899963

...

>PLN03012 Camelliol C synthase

Probab=99.77  E-value=2e-17  Score=160.96  Aligned_cols=241  Identities=13%  Similarity=0.107  Sum_probs=166.2

Q ss_pred             cChHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCCC---------------CCCCCC--CCCCCchHHHHHHHHH
Q psy15672         10 ASRAWICYWICHSLSLLDEPL-SSADKSCVVNFLSQCQSPN---------------GGFGGG--PGQDPHIAATYAAVNC   71 (271)
Q Consensus        10 ~~~~~~~y~~l~~L~lL~~~~-~~~~~~~~i~~l~~~q~~d---------------GGF~~~--~~~~~~~~~Ty~Av~~   71 (271)
                      .+.+|-|-|++.+|.--+..- .....+|+.+||++.|..+               |||...  ....++...|.-++.+
T Consensus       415 gSqvWDTa~~~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka  494 (759)
T PLN03012        415 GSQLWDSGFALQALLASNLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKC  494 (759)
T ss_pred             CCcHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHH
Confidence            788999999999998776421 2336789999999999742               777654  2344666677777755


Q ss_pred             H---HHhCCC---CcCCcCChHHHHHHHHhhcCCCCCeecccC----------------C-----CCChhHHHHHHHHHH
Q psy15672         72 L---IILGTP---EAYNCINRPKLKQFLQRLKAPDGGFHVHDG----------------G-----EVDIRGVYCALCVAL  124 (271)
Q Consensus        72 L---~~lg~~---~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~----------------~-----e~d~~~ty~a~~~l~  124 (271)
                      +   ..+..+   +..+.-...++++||.++|++||||.....                +     .+..--|-.++.+|.
T Consensus       495 ~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~  574 (759)
T PLN03012        495 CLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALI  574 (759)
T ss_pred             HHHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHH
Confidence            3   333211   001111356799999999999999964311                0     011112444556666


Q ss_pred             HhCcCC--------hhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCc--cCHHHHHHHHHhccC
Q psy15672        125 LTQVYS--------EDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHL--CDIKALLRWTTNRQM  194 (271)
Q Consensus       125 ll~~~~--------~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~--~~~~~~~~wl~~~Q~  194 (271)
                      +++...        ...+.++++||++.|++||||.++-+-. ....|++||.+|...|+...  .-++++++||+++|.
T Consensus       575 ~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~-y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~  653 (759)
T PLN03012        575 LFKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWGIC-FTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQK  653 (759)
T ss_pred             HHhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCccccccc-CCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcC
Confidence            654321        2457889999999999999999776543 33358899999999998532  458999999999999


Q ss_pred             CCcCCcCCCCC------------CCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcC
Q psy15672        195 NFEGGFQGRTN------------KLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLL  262 (271)
Q Consensus       195 ~~~GGf~gr~~------------k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~  262 (271)
                      + +||+.....            ..+-+..|.|++-+|-..+....         + ..-.++-.+||+ ..|.++|+|-
T Consensus       654 ~-DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~---------~-~~~i~Rg~~~Ll-~~Q~~dG~W~  721 (759)
T PLN03012        654 D-NGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAER---------D-PIPLHRAAKLII-NSQLENGDFP  721 (759)
T ss_pred             C-CCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCC---------C-cHHHHHHHHHHH-HcccCCCCCC
Confidence            8 899997532            23556899999999977654310         0 123477789998 4899999985


Q ss_pred             C
Q psy15672        263 D  263 (271)
Q Consensus       263 ~  263 (271)
                      .
T Consensus       722 q  722 (759)
T PLN03012        722 Q  722 (759)
T ss_pred             C
Confidence            4

>PLN02993 lupeol synthase

Probab=99.77  E-value=1.2e-17  Score=162.73  Aligned_cols=241  Identities=15%  Similarity=0.136  Sum_probs=166.9

Q ss_pred             cChHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCC-----C----------CCCCCC--CCCCCchHHHHHHHHH
Q psy15672         10 ASRAWICYWICHSLSLLDEP-LSSADKSCVVNFLSQCQSP-----N----------GGFGGG--PGQDPHIAATYAAVNC   71 (271)
Q Consensus        10 ~~~~~~~y~~l~~L~lL~~~-~~~~~~~~~i~~l~~~q~~-----d----------GGF~~~--~~~~~~~~~Ty~Av~~   71 (271)
                      .+.+|-|-|++.+|.--|.. -.....+++.+||++.|..     |          |||+.+  ....++...|..++.+
T Consensus       415 gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka  494 (763)
T PLN02993        415 GSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKC  494 (763)
T ss_pred             CCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHH
Confidence            78899999999999887742 2244688999999999873     2          888765  3345677788888775


Q ss_pred             HHHhCCCCc--C-CcC---ChHHHHHHHHhhcCCCCCeecccC------------------CCCChh---HHHHHHHHHH
Q psy15672         72 LIILGTPEA--Y-NCI---NRPKLKQFLQRLKAPDGGFHVHDG------------------GEVDIR---GVYCALCVAL  124 (271)
Q Consensus        72 L~~lg~~~~--~-~~~---~~~~~~~~l~~~q~~dGgf~~~~~------------------~e~d~~---~ty~a~~~l~  124 (271)
                      +.+|.....  . +.+   ...++++||.++|++||||.....                  .-.|..   -|-.++.+|.
T Consensus       495 ~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~  574 (763)
T PLN02993        495 CMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALV  574 (763)
T ss_pred             HHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHH
Confidence            444432110  0 112   256799999999999999985321                  011223   3444566666


Q ss_pred             HhCcC--C------hhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCc--cCHHHHHHHHHhccC
Q psy15672        125 LTQVY--S------EDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHL--CDIKALLRWTTNRQM  194 (271)
Q Consensus       125 ll~~~--~------~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~--~~~~~~~~wl~~~Q~  194 (271)
                      +++..  .      ...++++++||++.|++||||.++-+. .....|++||.+|..+|....  ..++++++||+++|+
T Consensus       575 ~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~Wgv-~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~  653 (763)
T PLN02993        575 LFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGNWGI-CFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQR  653 (763)
T ss_pred             HhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCccccccc-ccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence            65431  1      246789999999999999999865332 445568999999999998632  468999999999999


Q ss_pred             CCcCCcCCCC------------CCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcC
Q psy15672        195 NFEGGFQGRT------------NKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLL  262 (271)
Q Consensus       195 ~~~GGf~gr~------------~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~  262 (271)
                      + +|||....            +..+-+.-|-|++-+|...+...    .     + ..-.++-.+||+ ..|.++|+|-
T Consensus       654 ~-DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~----~-----~-~~~l~Rgi~~L~-~~Q~~~G~W~  721 (763)
T PLN02993        654 D-DGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAE----R-----D-LIPLHRAAKLII-TSQLENGDFP  721 (763)
T ss_pred             C-CCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCC----C-----C-cHHHHHHHHHHH-hccCCCCCCC
Confidence            8 89997632            12355688889988887664320    0     0 012467789988 5899999864


Q ss_pred             C
Q psy15672        263 D  263 (271)
Q Consensus       263 ~  263 (271)
                      -
T Consensus       722 q  722 (763)
T PLN02993        722 Q  722 (763)
T ss_pred             C
Confidence            3

>COG1689 Uncharacterized protein conserved in archaea [Function unknown]

Probab=99.68  E-value=1.2e-15  Score=125.59  Aligned_cols=203  Identities=18%  Similarity=0.133  Sum_probs=158.1

Q ss_pred             CccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCCCCCCCC-----------------------------
Q psy15672          5 GNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQC-QSPNGGFGG-----------------------------   54 (271)
Q Consensus         5 ~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~-q~~dGGF~~-----------------------------   54 (271)
                      |.++-+..+..+||+|.++.+||.++|  .+++.++||.+. |...+|+..                             
T Consensus        27 f~~~Lpdti~~TyYAi~i~s~lg~evP--r~EktiefL~d~~qt~~~~~a~~~~~l~~lg~~d~~r~~~~l~~~~~~~~e  104 (274)
T COG1689          27 FVSQLPDTINDTYYAIKIYSLLGHEVP--RKEKTIEFLYDQMQTAGVGVAMAIEFLRILGAKDLARNKMLLLFLKYNPLE  104 (274)
T ss_pred             EeccCcchhhhhhhhhhhhhhcCCcCc--hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccchhhHHHHHhhcCchh
Confidence            345566668999999999999999877  589999999983 444333321                             


Q ss_pred             ---------C--CCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHH
Q psy15672         55 ---------G--PGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVA  123 (271)
Q Consensus        55 ---------~--~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l  123 (271)
                               +  .++.+-+..||+...+|.+.+.+      -.+++-+|+.+-|+++|.+...--.-..++.||-|+-++
T Consensus       105 ~Kf~~~lggs~~f~t~~~Le~ty~~~~~l~~~n~~------~~eE~k~~v~~~~re~~~g~~YGv~~pnt~~t~~aly~l  178 (274)
T COG1689         105 EKFAVGLGGSEEFGTATPLEATYWMMSALNMVNYE------YLEEMKEKVIEFVREFGIGDAYGVTHPNTTMTYQALYTL  178 (274)
T ss_pred             HHHhhhcCceeecCCCchHHHHHHHHHHHHHhCcC------chHHHHHHHHHHhhhhccccccccCCcchHHHHHHHHhh
Confidence                     0  12234589999999999999853      267889999999999987765433445678888887777


Q ss_pred             HHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCC-CchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCC
Q psy15672        124 LLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFE-AHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQG  202 (271)
Q Consensus       124 ~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~e-s~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~g  202 (271)
                      ...+.     .+.+..|-+.|- .+|||...|++- +-...||+|+..|.+|+...  -+++.++||.+-|++ +|||+.
T Consensus       179 ~~k~~-----~~~v~~Fe~~c~-~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k~--~i~~~~rFI~slqN~-nGGFRR  249 (274)
T COG1689         179 GSKGP-----KEEVRHFELCCG-DWGGFTEVPNSYPPYIEPTFYALRGLELLGGKY--CISDHIRFIRSLQNQ-NGGFRR  249 (274)
T ss_pred             ccccc-----hHHHHhHHhccc-cCCCcccCCCCCCCccchHHHHHhHHHHHccCc--CchHHHHHHHHhhcC-CCCeee
Confidence            66543     556677777776 579999999976 45678999999999999873  367899999999998 899997


Q ss_pred             CCC-CCCCchhhhhhhhhHHHHH
Q psy15672        203 RTN-KLVDGCYSFWQGGLFPLIY  224 (271)
Q Consensus       203 r~~-k~~D~cyt~w~~~~L~~l~  224 (271)
                      ... .++..-+||.++++|..|.
T Consensus       250 S~~~GISt~e~tYrAl~~L~~l~  272 (274)
T COG1689         250 SYELGISTFENTYRALASLASLH  272 (274)
T ss_pred             eEeccccchHHHHHHHHHHHHHh
Confidence            654 6788999999999998874

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.63  E-value=4.9e-14  Score=125.40  Aligned_cols=236  Identities=10%  Similarity=-0.025  Sum_probs=149.0

Q ss_pred             CCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-------hcCCCCCCCCCCCCC--CCchHHHHHHHHHH
Q psy15672          2 SRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLS-------QCQSPNGGFGGGPGQ--DPHIAATYAAVNCL   72 (271)
Q Consensus         2 p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~-------~~q~~dGGF~~~~~~--~~~~~~Ty~Av~~L   72 (271)
                      |.-...+..++++...+++.-|...+. +++..++++++||.       +.|++||||+.....  .++.+.|.+++.+|
T Consensus        12 P~gc~Eq~~~~~~p~~~~~~yl~~~~~-~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L   90 (292)
T cd02897          12 PYGCGEQNMVNFAPNIYVLDYLKATGQ-LTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSF   90 (292)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHH
Confidence            444444555666667677776666554 33445566666665       689999999865333  67899999999999


Q ss_pred             HHhCCCCcCCcCChHHHHHHHHhhcCCCCCeeccc--------C-CCCChhHHHHHHHHHHHhCcC-ChhhHHHHHHHHH
Q psy15672         73 IILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHD--------G-GEVDIRGVYCALCVALLTQVY-SEDLFNNTREWLT  142 (271)
Q Consensus        73 ~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~--------~-~e~d~~~ty~a~~~l~ll~~~-~~~~~~~~~~~l~  142 (271)
                      ...+.....+....+++++||.+.|++||+|....        + .+++...|-.++.+|...|.. ..+.++++++||.
T Consensus        91 ~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~  170 (292)
T cd02897          91 AQARPFIYIDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLE  170 (292)
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHH
Confidence            88763211222346789999999999999998421        1 123344566666666666643 2456899999999


Q ss_pred             HcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCC--CcCCcCCC----------C-CCCCC
Q psy15672        143 ACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMN--FEGGFQGR----------T-NKLVD  209 (271)
Q Consensus       143 ~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~--~~GGf~gr----------~-~k~~D  209 (271)
                      +.+..          ..+...+..+..+|.++|..   ..++++++|...+..  ..|++...          + ...+|
T Consensus       171 ~~~~~----------~~~~y~~al~a~AL~~~~~~---~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~  237 (292)
T cd02897         171 AALDS----------ISDPYTLALAAYALTLAGSE---KRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAE  237 (292)
T ss_pred             Hhccc----------CCCHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcch
Confidence            98753          23455577778888888832   355666666654321  13555421          1 12346


Q ss_pred             chhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCCC
Q psy15672        210 GCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDK  264 (271)
Q Consensus       210 ~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~  264 (271)
                      +.-|=|++-+|...+..            ......++.+||. .+|+++|||+.-
T Consensus       238 ve~TAyaLlall~~~~~------------~~~~~~~~v~WL~-~~q~~~Ggf~sT  279 (292)
T cd02897         238 VEMTAYALLALLSAGGE------------DLAEALPIVKWLA-KQRNSLGGFSST  279 (292)
T ss_pred             HHHHHHHHHHHHHcCCc------------cHhHHHHHHHHHH-HcCCCCCCcccH
Confidence            66565555554433210            1234567788988 589999999753

This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.

>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement

Probab=99.62  E-value=2e-14  Score=128.20  Aligned_cols=233  Identities=11%  Similarity=-0.014  Sum_probs=150.2

Q ss_pred             CCCCccCccChHHHHHHHHHHHHHcCCC--CCh-------hhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHH
Q psy15672          2 SRVGNCLDASRAWICYWICHSLSLLDEP--LSS-------ADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCL   72 (271)
Q Consensus         2 p~~~~~~d~~~~~~~y~~l~~L~lL~~~--~~~-------~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L   72 (271)
                      |.-.--|.-++++...+++.=|...+.-  ..+       ...++.+..+++.|++||||+......++.+.|.+++.+|
T Consensus        12 P~GC~EQ~~~~~~p~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l   91 (297)
T cd02896          12 PTGCGEQTMIKLAPTVYALRYLDTTNQWEKLGPERRDEALKYIRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVF   91 (297)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHH
Confidence            4343444455555566665555554331  111       2245567778899999999987766688999999999999


Q ss_pred             HHhCCCCcCCcCChHHHHHHHHhhcCCCCCeeccc--------CC----CCChhHHHHHHHHHHHhCcCC-------hhh
Q psy15672         73 IILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHD--------GG----EVDIRGVYCALCVALLTQVYS-------EDL  133 (271)
Q Consensus        73 ~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~--------~~----e~d~~~ty~a~~~l~ll~~~~-------~~~  133 (271)
                      ...+.....+....+++++||.+.|++||+|....        ++    ++++..|-.++.+|...+...       ...
T Consensus        92 ~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~  171 (297)
T cd02896          92 SLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQS  171 (297)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhccCCccccCCCccchHHHHHHHHhhhccccccchhhHHH
Confidence            88765311122236779999999999999998541        11    245555555555555554321       346


Q ss_pred             HHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCC----------
Q psy15672        134 FNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGR----------  203 (271)
Q Consensus       134 ~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr----------  203 (271)
                      ++++++||.+++..          ..+...+.-+.-+|.+.|..   ...++.+||.++|.. +||+...          
T Consensus       172 i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~~~---~~~~a~~~L~~~~~~-d~~~~~~~~~~~~~~~~  237 (297)
T cd02896         172 IRKAISYLENQLPN----------LQRPYALAITAYALALADSP---LSHAANRKLLSLAKR-DGNGWYWWTIDSPYWPV  237 (297)
T ss_pred             HHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCCh---hhHHHHHHHHHHhhh-CCCcceeccCcCccCCC
Confidence            78999999998853          12232344455567777754   468899999999987 7776532          


Q ss_pred             -CCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCC
Q psy15672        204 -TNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLD  263 (271)
Q Consensus       204 -~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~  263 (271)
                       .....++--|=|++-++-..+.              ......+.+||. .-|+..|||+.
T Consensus       238 ~~~~~~~vE~TAYALLall~~~~--------------~~~a~~iv~WL~-~qr~~~Ggf~s  283 (297)
T cd02896         238 PGPSAITVETTAYALLALLKLGD--------------IEYANPIARWLT-EQRNYGGGFGS  283 (297)
T ss_pred             CCCchhhhHHHHHHHHHHHhcCC--------------chhHHHHHHHHH-hcCCCCCCeeh
Confidence             1223366666555555443321              235688999988 46888999974

The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.

>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family

Probab=99.46  E-value=7.7e-14  Score=88.50  Aligned_cols=43  Identities=42%  Similarity=0.758  Sum_probs=41.5

Q ss_pred             hHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhc
Q psy15672        133 LFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLK  175 (271)
Q Consensus       133 ~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg  175 (271)
                      +++++++||++||++||||+.+|++++|+++||||+++|+++|
T Consensus         2 d~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg   44 (44)
T PF00432_consen    2 DVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG   44 (44)
T ss_dssp             HHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence            6889999999999999999999999999999999999999986

; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....

>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement

Probab=99.46  E-value=1.9e-12  Score=115.47  Aligned_cols=180  Identities=17%  Similarity=0.141  Sum_probs=130.6

Q ss_pred             CccChHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCCCCCCCCCC--------C----CCCchHHHHHHHHHHH
Q psy15672          8 LDASRAWICYWICHSLSLLDE--PLSSADKSCVVNFLSQCQSPNGGFGGGP--------G----QDPHIAATYAAVNCLI   73 (271)
Q Consensus         8 ~d~~~~~~~y~~l~~L~lL~~--~~~~~~~~~~i~~l~~~q~~dGGF~~~~--------~----~~~~~~~Ty~Av~~L~   73 (271)
                      ...+.+|++-|++.+|.....  .+++...++.++||.+.|++||+|....        +    .++++..|.+++.+|.
T Consensus        76 ~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg~~~~~~~~~lTA~vl~aL~  155 (297)
T cd02896          76 NRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEGSEGDVSLTAFVLIALQ  155 (297)
T ss_pred             CCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhccCCccccCCCccchHHHHHHHH
Confidence            347889999999999988865  3566778899999999999999998531        1    1356778888888887


Q ss_pred             HhCCCCcC----CcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCC
Q psy15672         74 ILGTPEAY----NCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEG  149 (271)
Q Consensus        74 ~lg~~~~~----~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dG  149 (271)
                      -.+.....    ....++++++||.+.+.+-          .++..+..+..+|.+.|.   ...+++.++|+++|+.||
T Consensus       156 ~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~~----------~~~Y~~Al~ayALal~~~---~~~~~a~~~L~~~~~~d~  222 (297)
T cd02896         156 EARSICPPEVQNLDQSIRKAISYLENQLPNL----------QRPYALAITAYALALADS---PLSHAANRKLLSLAKRDG  222 (297)
T ss_pred             hhhccccccchhhHHHHHHHHHHHHHhcccC----------CChHHHHHHHHHHHHcCC---hhhHHHHHHHHHHhhhCC
Confidence            77642100    1124678999999987641          122222233344555553   267889999999999999


Q ss_pred             CCCCC---------CCC--CCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCC
Q psy15672        150 GFSGY---------PGF--EAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGR  203 (271)
Q Consensus       150 GF~~~---------p~~--es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr  203 (271)
                      |++..         ...  ..++..|.|||.++...+..  ....+.++||.+.|+. .|||..-
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~~~--~~a~~iv~WL~~qr~~-~Ggf~sT  284 (297)
T cd02896         223 NGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLGDI--EYANPIARWLTEQRNY-GGGFGST  284 (297)
T ss_pred             CcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcCCc--hhHHHHHHHHHhcCCC-CCCeehH
Confidence            98742         111  23788999999998888743  3678899999999987 7999863

The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.45  E-value=5.9e-12  Score=112.01  Aligned_cols=180  Identities=18%  Similarity=0.158  Sum_probs=125.5

Q ss_pred             ccChHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCCCCCCCCCC---------CCCCchHHHHHHHHHHHHhCC
Q psy15672          9 DASRAWICYWICHSLSLLDE--PLSSADKSCVVNFLSQCQSPNGGFGGGP---------GQDPHIAATYAAVNCLIILGT   77 (271)
Q Consensus         9 d~~~~~~~y~~l~~L~lL~~--~~~~~~~~~~i~~l~~~q~~dGGF~~~~---------~~~~~~~~Ty~Av~~L~~lg~   77 (271)
                      +.+.+|+|-|++.+|.....  .+++...+++++||.+.|++||||....         +..+++..|.+++.+|...|.
T Consensus        76 ~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~  155 (292)
T cd02897          76 KSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGL  155 (292)
T ss_pred             CCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCC
Confidence            47789999999999998874  3566788999999999999999998531         123456688899999988886


Q ss_pred             CCcCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHH---cccCCCCCCCC
Q psy15672         78 PEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTA---CQTYEGGFSGY  154 (271)
Q Consensus        78 ~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~---~q~~dGGF~~~  154 (271)
                      ..  ....++++++||.+.+.+          ..++..+..+..+|.+.+..   ..+++++++..   .+..+|+|+..
T Consensus       156 ~~--~~~~i~~a~~yL~~~~~~----------~~~~y~~al~a~AL~~~~~~---~~~~~~~~l~~~~~~~~~~~~W~~~  220 (292)
T cd02897         156 PS--ERPVVEKALSCLEAALDS----------ISDPYTLALAAYALTLAGSE---KRPEALKKLDELAISEDGTKHWSRP  220 (292)
T ss_pred             cc--ccHHHHHHHHHHHHhccc----------CCCHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHhccCCCCCCCcC
Confidence            32  223478999999998765          12333444555666666632   24455555444   44445566532


Q ss_pred             ----------CC-CCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCC
Q psy15672        155 ----------PG-FEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRT  204 (271)
Q Consensus       155 ----------p~-~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~  204 (271)
                                +. ..+++..|.|+|.+|...+........+.++||.+.|++ +|||..--
T Consensus       221 ~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~~~~~~~~~~v~WL~~~q~~-~Ggf~sTQ  280 (292)
T cd02897         221 PPSEEGPSYYWQAPSAEVEMTAYALLALLSAGGEDLAEALPIVKWLAKQRNS-LGGFSSTQ  280 (292)
T ss_pred             CCcccccccCCCCCcchHHHHHHHHHHHHHcCCccHhHHHHHHHHHHHcCCC-CCCcccHH
Confidence                      22 235778899999999888742234567888999999987 79988643

This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.

>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family

Probab=99.36  E-value=5e-13  Score=84.72  Aligned_cols=44  Identities=30%  Similarity=0.573  Sum_probs=41.5

Q ss_pred             cCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHH
Q psy15672        180 CDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIY  224 (271)
Q Consensus       180 ~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~  224 (271)
                      +|++++++||++||.+ +|||+++|++.+|+|||||++++|++|+
T Consensus         1 id~~~~~~~l~~~Q~~-dGGf~~~~~~~~d~~~t~~~~~~L~llg   44 (44)
T PF00432_consen    1 IDVEKLIRFLLSCQNP-DGGFGGRPGGESDTCYTYCALAALSLLG   44 (44)
T ss_dssp             SHHHHHHHHHHHTBBT-TSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHCCC-CCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence            4689999999999997 9999999999999999999999999975

; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A

Probab=99.35  E-value=4.7e-13  Score=101.49  Aligned_cols=104  Identities=18%  Similarity=0.240  Sum_probs=41.3

Q ss_pred             HHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcC-ChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhh
Q psy15672         87 PKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVY-SEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTF  165 (271)
Q Consensus        87 ~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~-~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~  165 (271)
                      +++++||.+.|++||+|....  +.+...|++++.++..++.. ..+.++++++||+++|++||||+..+.  .+...|.
T Consensus         2 ~~~~~~l~~~Q~~dG~W~~~~--~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~--~~~~~t~   77 (109)
T PF13243_consen    2 KRAAEWLLSQQNPDGSWGYNW--GSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGG--EYVSMTA   77 (109)
T ss_dssp             -----------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHHH
T ss_pred             ccccccccccccccccccccc--cccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCC--CCHHHHH
Confidence            578999999999999997652  25678888888888888642 345689999999999999999997733  3344667


Q ss_pred             hhhhHHHhhccCC-ccCHHHHHHHHHhccC
Q psy15672        166 CGFAALCLLKSEH-LCDIKALLRWTTNRQM  194 (271)
Q Consensus       166 ~al~aL~llg~~~-~~~~~~~~~wl~~~Q~  194 (271)
                      .++.+|.+.+... ...+++.++||+++|.
T Consensus        78 ~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~  107 (109)
T PF13243_consen   78 AAIAALALAGVYPDDEAVERGLEWILSHQL  107 (109)
T ss_dssp             HHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence            7788887776642 3357899999999875

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A

Probab=99.34  E-value=1.4e-12  Score=98.91  Aligned_cols=105  Identities=21%  Similarity=0.276  Sum_probs=38.7

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhH
Q psy15672         36 SCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRG  115 (271)
Q Consensus        36 ~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~  115 (271)
                      +++++||++.|++||||....  ..+...|++++.+|..++...  ....++++++||.++|++||+|...  .......
T Consensus         2 ~~~~~~l~~~Q~~dG~W~~~~--~~~~~~t~~~~~al~~~~~~~--~~~ai~ka~~~l~~~Q~~dG~w~~~--~~~~~~~   75 (109)
T PF13243_consen    2 KRAAEWLLSQQNPDGSWGYNW--GSDVFVTAALILALAAAGDAA--VDEAIKKAIDWLLSHQNPDGGWGYS--GGEYVSM   75 (109)
T ss_dssp             -----------------------------------------TS---SSBSSHHHHHHHHH---TTS--S-T--S--HHHH
T ss_pred             ccccccccccccccccccccc--cccccccccccccccccCCCC--cHHHHHHHHHHHHHhcCCCCCCCCc--CCCCHHH
Confidence            678999999999999998642  367889999999999998642  2334799999999999999999866  2223445


Q ss_pred             HHHHHHHHHHhCc-CChhhHHHHHHHHHHccc
Q psy15672        116 VYCALCVALLTQV-YSEDLFNNTREWLTACQT  146 (271)
Q Consensus       116 ty~a~~~l~ll~~-~~~~~~~~~~~~l~~~q~  146 (271)
                      |..++.++.+.+. ...+.++++++||++.|.
T Consensus        76 t~~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~  107 (109)
T PF13243_consen   76 TAAAIAALALAGVYPDDEAVERGLEWILSHQL  107 (109)
T ss_dssp             HHHHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence            5556666655543 245779999999999874

>KOG0497|consensus

Probab=99.27  E-value=4.8e-11  Score=113.13  Aligned_cols=170  Identities=20%  Similarity=0.215  Sum_probs=126.7

Q ss_pred             CCCCChhhHHHHHHHHHhcCCCCCCCCCCCC---------------------CCCchHHHHHHHHHHHHhCCCCc-CC--
Q psy15672         27 DEPLSSADKSCVVNFLSQCQSPNGGFGGGPG---------------------QDPHIAATYAAVNCLIILGTPEA-YN--   82 (271)
Q Consensus        27 ~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~---------------------~~~~~~~Ty~Av~~L~~lg~~~~-~~--   82 (271)
                      ++.++++..-.+++.|+..|.++|||....-                     ..+.+..|-.+|++|........ ..  
T Consensus       506 g~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~  585 (760)
T KOG0497|consen  506 GEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKK  585 (760)
T ss_pred             cCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHH
Confidence            3445555556688999999999999985311                     13567789999999988865311 11  


Q ss_pred             cC--ChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHH---HHHHHHhCcC--ChhhHHHHHHHHHHcccCCCCCCCCC
Q psy15672         83 CI--NRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCA---LCVALLTQVY--SEDLFNNTREWLTACQTYEGGFSGYP  155 (271)
Q Consensus        83 ~~--~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a---~~~l~ll~~~--~~~~~~~~~~~l~~~q~~dGGF~~~p  155 (271)
                      .+  ..++++.||.+.|.+||+|.++.+    +++||..   +.++...|..  +-..++++++||++.|+.|||++..+
T Consensus       586 Ei~~~i~~av~~ie~~Q~~DGSWyGsWg----vCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~  661 (760)
T KOG0497|consen  586 EIEKSIEKAVEFIEKLQLPDGSWYGSWG----VCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESY  661 (760)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcccchhh----HHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCcccc
Confidence            11  256799999999999999987643    5566654   4444555532  23578999999999999999999753


Q ss_pred             ------------CCCCchhhhhhhhhHHHhhccCCcc--CHHHHHHHHHhccCCCcCCcC
Q psy15672        156 ------------GFEAHGGYTFCGFAALCLLKSEHLC--DIKALLRWTTNRQMNFEGGFQ  201 (271)
Q Consensus       156 ------------~~es~~~~T~~al~aL~llg~~~~~--~~~~~~~wl~~~Q~~~~GGf~  201 (271)
                                  +..+++-.|.||+.+|.+.|+.+..  -..+++..|.+.|.. +|-|.
T Consensus       662 lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~-nGdfp  720 (760)
T KOG0497|consen  662 LSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLE-NGDFP  720 (760)
T ss_pred             ccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccc-cCCcc
Confidence                        2347888999999999999987533  578999999999987 67665

>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.22  E-value=1.4e-09  Score=95.81  Aligned_cols=148  Identities=11%  Similarity=-0.070  Sum_probs=103.3

Q ss_pred             hHHHHHHHHHhcCCCCCCCCCCCCC-CCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccC----
Q psy15672         34 DKSCVVNFLSQCQSPNGGFGGGPGQ-DPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDG----  108 (271)
Q Consensus        34 ~~~~~i~~l~~~q~~dGGF~~~~~~-~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~----  108 (271)
                      .+++.+++|.++|++||||+..++. .++.+.|.+++.+|...+.....+....+++++||.+.|++||+|.....    
T Consensus        50 ~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~  129 (282)
T cd02891          50 YIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHR  129 (282)
T ss_pred             HHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCH
Confidence            4667899999999999999987766 88999999999999877642111112278899999999999999986422    


Q ss_pred             -----CCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCccCHH
Q psy15672        109 -----GEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIK  183 (271)
Q Consensus       109 -----~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~~~~~  183 (271)
                           ...+...|..++.+|...|......+.++++||.+....          ..+.........+|.++|..  ....
T Consensus       130 ~~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~----------~~~~~~~a~la~al~~~g~~--~~~~  197 (282)
T cd02891         130 EMKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDG----------LLDPYALAILAYALALAGDS--TRAD  197 (282)
T ss_pred             hhcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCcc--HHHH
Confidence                 223445566677677766654456788999999987742          12233344555666777753  2355


Q ss_pred             HHHHHHHhcc
Q psy15672        184 ALLRWTTNRQ  193 (271)
Q Consensus       184 ~~~~wl~~~Q  193 (271)
                      ++++-+.+.-
T Consensus       198 ~~l~~l~~~~  207 (282)
T cd02891         198 EALKKLLEAA  207 (282)
T ss_pred             HHHHHHHHHh
Confidence            6666666553

Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga

>KOG0497|consensus

Probab=99.02  E-value=1.7e-08  Score=96.14  Aligned_cols=236  Identities=16%  Similarity=0.184  Sum_probs=160.3

Q ss_pred             ChHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCCCC---------------CCCCCCCC----CCCchHHHHHHH
Q psy15672         11 SRAWICYWICHSLSLLDEPLSS--ADKSCVVNFLSQCQSPN---------------GGFGGGPG----QDPHIAATYAAV   69 (271)
Q Consensus        11 ~~~~~~y~~l~~L~lL~~~~~~--~~~~~~i~~l~~~q~~d---------------GGF~~~~~----~~~~~~~Ty~Av   69 (271)
                      +.+|.+=|+|.++..-+.+ ++  ...++..+||.+.|-.+               |||..+..    ..+|  .|.-|+
T Consensus       415 sQ~Wdt~falqalla~~~~-~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS~~d~gw~vsD--ctaEal  491 (760)
T KOG0497|consen  415 SQLWDTAFALQALLAAGLV-DEFRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFSDRDQGWPVSD--CTAEAL  491 (760)
T ss_pred             hhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHhhhcccccCCCcchhhheeccccccccccccccceeecc--ccHHHH
Confidence            7899999999999888775 21  24567889999988654               55554332    1233  566666


Q ss_pred             HHHHHhCCCC---cCCcCChHH---HHHHHHhhcCCCCCeeccc----------------CCCC-----ChhHHHHHHHH
Q psy15672         70 NCLIILGTPE---AYNCINRPK---LKQFLQRLKAPDGGFHVHD----------------GGEV-----DIRGVYCALCV  122 (271)
Q Consensus        70 ~~L~~lg~~~---~~~~~~~~~---~~~~l~~~q~~dGgf~~~~----------------~~e~-----d~~~ty~a~~~  122 (271)
                      .+..+++...   ..+.+++++   +++.|..+|..+|||....                .+..     -+.-|-.++.+
T Consensus       492 ~~~lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~a  571 (760)
T KOG0497|consen  492 KCCLLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQA  571 (760)
T ss_pred             HHHHHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHH
Confidence            6666666532   125678887   5666899999999997431                1111     23344566677


Q ss_pred             HHHhCcC-C-------hhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCC--ccCHHHHHHHHHhc
Q psy15672        123 ALLTQVY-S-------EDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEH--LCDIKALLRWTTNR  192 (271)
Q Consensus       123 l~ll~~~-~-------~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~--~~~~~~~~~wl~~~  192 (271)
                      |...... .       ...+.++++||.+.|.+||.+-+.-+- =-...|+.|+.+|...|+..  ...+++.++||++.
T Consensus       572 L~~F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWgv-CFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~  650 (760)
T KOG0497|consen  572 LVYFHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWGV-CFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSK  650 (760)
T ss_pred             HHhhcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhH-HHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhh
Confidence            7766432 1       134678999999999999998544321 12334778999999999853  34689999999999


Q ss_pred             cCCCcCCcCCCCC----C--------CCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCC
Q psy15672        193 QMNFEGGFQGRTN----K--------LVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGG  260 (271)
Q Consensus       193 Q~~~~GGf~gr~~----k--------~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GG  260 (271)
                      |.+ +||+...+.    |        .+.+--|.|++..|-+.+..-+.          ..-..+..++|. ..|-.+|-
T Consensus       651 Q~~-~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd----------~~P~hr~ak~li-nsQ~~nGd  718 (760)
T KOG0497|consen  651 QNP-DGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERD----------PLPLHRAAKVLI-NSQLENGD  718 (760)
T ss_pred             hcc-cCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccc----------cchHHHHHHHHH-hcccccCC
Confidence            998 899985432    1        34677899999999887654111          234567778877 48988886


Q ss_pred             cC
Q psy15672        261 LL  262 (271)
Q Consensus       261 f~  262 (271)
                      |-
T Consensus       719 fp  720 (760)
T KOG0497|consen  719 FP  720 (760)
T ss_pred             cc
Confidence            63

>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family

Probab=98.93  E-value=6.7e-09  Score=90.25  Aligned_cols=194  Identities=16%  Similarity=0.154  Sum_probs=114.0

Q ss_pred             HHHHhcCCCCCCCCCC-CCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccC-------CCC
Q psy15672         40 NFLSQCQSPNGGFGGG-PGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDG-------GEV  111 (271)
Q Consensus        40 ~~l~~~q~~dGGF~~~-~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~-------~e~  111 (271)
                      .=+++.+++||||+.. ...+++.+.|.+++..|......-..+.-..+++++||.+.|++||+|.....       +..
T Consensus         4 qr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~   83 (246)
T PF07678_consen    4 QRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGV   83 (246)
T ss_dssp             HHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGG
T ss_pred             HHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCC
Confidence            3467889999999988 66789999999999999888753111112257899999999999999975311       111


Q ss_pred             ChhHHHHHHHHHHHhCcC---------ChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhH--HHhhccCCcc
Q psy15672        112 DIRGVYCALCVALLTQVY---------SEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAA--LCLLKSEHLC  180 (271)
Q Consensus       112 d~~~ty~a~~~l~ll~~~---------~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~a--L~llg~~~~~  180 (271)
                      +-..+..|....+++...         ....++++++||.+...         +. .+. |+- ||.+  |.+++  +..
T Consensus        84 ~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~---------~~-~~~-Y~l-Al~aYAL~la~--~~~  149 (246)
T PF07678_consen   84 EDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLD---------NI-QDP-YTL-ALVAYALALAG--DSP  149 (246)
T ss_dssp             THHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHG---------CT-SSH-HHH-HHHHHHHHHTT--TCH
T ss_pred             CCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhcc---------cc-CCH-HHH-HHHHHHHHhhc--ccc
Confidence            233444444444444221         13568899999987621         10 111 221 3333  44455  334


Q ss_pred             CHHHHHHHHHhccCCCcCCcCCCCCCC--------------CCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHH
Q psy15672        181 DIKALLRWTTNRQMNFEGGFQGRTNKL--------------VDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRAL  246 (271)
Q Consensus       181 ~~~~~~~wl~~~Q~~~~GGf~gr~~k~--------------~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l  246 (271)
                      ...++.+-|.+.... +||....+...              .|+.-|=+++  |.++...            .+.....+
T Consensus       150 ~~~~~~~~L~~~a~~-~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaL--La~l~~~------------~~~~~~~i  214 (246)
T PF07678_consen  150 QASKLLNKLNSMATT-EGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYAL--LALLKRG------------DLEEASPI  214 (246)
T ss_dssp             HHHHHHHHHHCHCEE-TTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHH--HHHHHHT------------CHHHHHHH
T ss_pred             hHHHHHHHHHHhhhh-ccccCcccCCcccccccccccccchHHHHHHHHHH--HHHHhcc------------cHHHHHHH
Confidence            567788888877655 55554322221              1223332222  3333321            12456889


Q ss_pred             HHHHHhhhCCCCCCcCC
Q psy15672        247 QEYILICCQHFNGGLLD  263 (271)
Q Consensus       247 ~~~il~~~Q~~~GGf~~  263 (271)
                      .+||. .-|+..|||+.
T Consensus       215 v~WL~-~qr~~~Ggf~S  230 (246)
T PF07678_consen  215 VRWLI-SQRNSGGGFGS  230 (246)
T ss_dssp             HHHHH-HCTTTTSSTSS
T ss_pred             HHHHH-HhcCCCCccCc
Confidence            99988 46688999975

The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....

>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family

Probab=98.80  E-value=9.7e-08  Score=82.95  Aligned_cols=180  Identities=21%  Similarity=0.229  Sum_probs=119.6

Q ss_pred             CccCccChHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCCCCCCCCCCC---------CCCchHHHHHHHHHHH
Q psy15672          5 GNCLDASRAWICYWICHSLSLLDEP--LSSADKSCVVNFLSQCQSPNGGFGGGPG---------QDPHIAATYAAVNCLI   73 (271)
Q Consensus         5 ~~~~d~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~i~~l~~~q~~dGGF~~~~~---------~~~~~~~Ty~Av~~L~   73 (271)
                      |....++..|+|-|++..|.....-  +++...+++++||.+.|++||.|.....         ...++..|.+.+.+|.
T Consensus        19 f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~~~~~~lTA~VliAL~   98 (246)
T PF07678_consen   19 FSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGVEDDIALTAYVLIALL   98 (246)
T ss_dssp             STTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGGTHHHHHHHHHHHHHH
T ss_pred             cccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCCCCCeeehHHHHHHHH
Confidence            4345689999999999999998874  4677789999999999999999975321         1235667777777776


Q ss_pred             HhCCCC----cCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHH-HHH--HHHHhCcCChhhHHHHHHHHHHccc
Q psy15672         74 ILGTPE----AYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYC-ALC--VALLTQVYSEDLFNNTREWLTACQT  146 (271)
Q Consensus        74 ~lg~~~----~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~-a~~--~l~ll~~~~~~~~~~~~~~l~~~q~  146 (271)
                      -.+...    .......+++++||.+....             ....|. |+.  +|.+.+  ..+..+++.+-|.+...
T Consensus        99 e~~~~~~~~~~~~~~~i~kA~~~L~~~~~~-------------~~~~Y~lAl~aYAL~la~--~~~~~~~~~~~L~~~a~  163 (246)
T PF07678_consen   99 EAGSLCDSEKPEYENAINKALNYLERHLDN-------------IQDPYTLALVAYALALAG--DSPQASKLLNKLNSMAT  163 (246)
T ss_dssp             HCHCCHTTTHHCHHHHHHHHHHHHHHHHGC-------------TSSHHHHHHHHHHHHHTT--TCHHHHHHHHHHHCHCE
T ss_pred             hhhhhccccchhhHHHHHHHHHHHHHhccc-------------cCCHHHHHHHHHHHHhhc--ccchHHHHHHHHHHhhh
Confidence            665210    00123478899999876211             112232 222  334444  34667888888888887


Q ss_pred             CCCCCCCCCCCC--------------CchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCC
Q psy15672        147 YEGGFSGYPGFE--------------AHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQG  202 (271)
Q Consensus       147 ~dGGF~~~p~~e--------------s~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~g  202 (271)
                      .+||....+...              .++..|.+||.++...  .+.......++||.+.|+. .|||..
T Consensus       164 ~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~--~~~~~~~~iv~WL~~qr~~-~Ggf~S  230 (246)
T PF07678_consen  164 TEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKR--GDLEEASPIVRWLISQRNS-GGGFGS  230 (246)
T ss_dssp             ETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCTTT-TSSTSS
T ss_pred             hccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhcCC-CCccCc
Confidence            777754322211              2467788888766666  3344678999999998887 799987

The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....

>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=98.79  E-value=5e-08  Score=85.98  Aligned_cols=109  Identities=16%  Similarity=0.105  Sum_probs=85.7

Q ss_pred             hHHHHHHHHhhcCCCCCeecccCC-CCChhHHHHHHHHHHHhC---cCChhhHHHHHHHHHHcccCCCCCCCCCC-----
Q psy15672         86 RPKLKQFLQRLKAPDGGFHVHDGG-EVDIRGVYCALCVALLTQ---VYSEDLFNNTREWLTACQTYEGGFSGYPG-----  156 (271)
Q Consensus        86 ~~~~~~~l~~~q~~dGgf~~~~~~-e~d~~~ty~a~~~l~ll~---~~~~~~~~~~~~~l~~~q~~dGGF~~~p~-----  156 (271)
                      +++++++|.+.|++||||+..++. +++...|..++.+|...+   ..+...++++++||.+.|..||+|.....     
T Consensus        51 i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~  130 (282)
T cd02891          51 IRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHRE  130 (282)
T ss_pred             HHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHh
Confidence            567899999999999999988766 788888888888887653   23456689999999999999999986432     


Q ss_pred             ----CCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccC
Q psy15672        157 ----FEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQM  194 (271)
Q Consensus       157 ----~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~  194 (271)
                          .......|.+++.+|...|......+.+.++||.++..
T Consensus       131 ~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~  172 (282)
T cd02891         131 MKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLD  172 (282)
T ss_pred             hcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhcc
Confidence                22344568999999998887543457889999998753

Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga

>COG1657 SqhC Squalene cyclase [Lipid metabolism]

Probab=98.12  E-value=6e-06  Score=77.76  Aligned_cols=163  Identities=20%  Similarity=0.197  Sum_probs=104.1

Q ss_pred             hHHHHHHHHHhcCCCCCCCCCCCCCC-------------------CchHHHHHHHHHHHHhCCC-CcCCcCChHHHHHHH
Q psy15672         34 DKSCVVNFLSQCQSPNGGFGGGPGQD-------------------PHIAATYAAVNCLIILGTP-EAYNCINRPKLKQFL   93 (271)
Q Consensus        34 ~~~~~i~~l~~~q~~dGGF~~~~~~~-------------------~~~~~Ty~Av~~L~~lg~~-~~~~~~~~~~~~~~l   93 (271)
                      +-++.++||...|+..|||...+-..                   +-+..|-..+..|..+... ++....+.+++++||
T Consensus       282 ~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~L  361 (517)
T COG1657         282 NFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVDPSTADCTHRVVLALAALNAYLEAYDGQPIERALEWL  361 (517)
T ss_pred             hHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccccccCCcccCCCccHHHHhhhhhccccccCCcccHHHhhh
Confidence            45669999999999999998653211                   1111222222223333221 101135688999999


Q ss_pred             HhhcCCCCCeecccCCCCChhHHHHH---HHHHHHhCcCC--hhhHHHHHHHHHHcccCCCCCCCCCC---------CC-
Q psy15672         94 QRLKAPDGGFHVHDGGEVDIRGVYCA---LCVALLTQVYS--EDLFNNTREWLTACQTYEGGFSGYPG---------FE-  158 (271)
Q Consensus        94 ~~~q~~dGgf~~~~~~e~d~~~ty~a---~~~l~ll~~~~--~~~~~~~~~~l~~~q~~dGGF~~~p~---------~e-  158 (271)
                      .+.|.++|+|....+    .+++|..   +..+++.|...  ...+.+++.|+.++|++||||+..-.         .+ 
T Consensus       362 L~~Q~~~GsW~g~w~----v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~  437 (517)
T COG1657         362 LSDQEPDGSWYGRWG----VCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTES  437 (517)
T ss_pred             hhhccccCceeeEEE----EEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCcccccccccccccccccc
Confidence            999999999976532    2344444   44444555332  24688999999999999999985311         12 


Q ss_pred             CchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcC
Q psy15672        159 AHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQ  201 (271)
Q Consensus       159 s~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~  201 (271)
                      +-.-.|-||+..+....+....-.+..++.+.+.|.+ +|-.+
T Consensus       438 sl~~~~~wal~~~~~a~~~~~~~i~~~~~~~~~~~~~-~g~~~  479 (517)
T COG1657         438 SLLVQTNWALIALLTALEPNQEAIKPGINLLVSDQEP-DGSWR  479 (517)
T ss_pred             hhhcchhHHHHHHHHhcccchhhhcccccccccCcCC-CCccc
Confidence            2334677888888877766433367788999999886 44433

>COG1657 SqhC Squalene cyclase [Lipid metabolism]

Probab=97.81  E-value=6.8e-05  Score=70.75  Aligned_cols=158  Identities=22%  Similarity=0.284  Sum_probs=103.6

Q ss_pred             CCCCCCCCC--CCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccCCC---------------
Q psy15672         48 PNGGFGGGP--GQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGE---------------  110 (271)
Q Consensus        48 ~dGGF~~~~--~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e---------------  110 (271)
                      .-|||+...  ...+|...|-.++..+.....     ..+-+++++|+...|+..|+|...+...               
T Consensus       248 ~~g~W~f~~~~~~ypd~d~T~~~~~al~~~~~-----~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~  322 (517)
T COG1657         248 SPGGWGFSNINTGYPDADDTAGVVRALIGVQS-----LPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKA  322 (517)
T ss_pred             CCCccceeecccCCCCchhhhHHHHHHHhhcc-----hhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccc
Confidence            346665433  356778888888887777653     4567779999999999999998542110               


Q ss_pred             -CCh---hHHHHHHHHHHHhCcC-C---hhhHHHHHHHHHHcccCCCCCCCCCCCCCchhh---hhhhhhHHHhhccCC-
Q psy15672        111 -VDI---RGVYCALCVALLTQVY-S---EDLFNNTREWLTACQTYEGGFSGYPGFEAHGGY---TFCGFAALCLLKSEH-  178 (271)
Q Consensus       111 -~d~---~~ty~a~~~l~ll~~~-~---~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~---T~~al~aL~llg~~~-  178 (271)
                       .+.   .-|-..+.++..++.. +   ...++++++||++.|.++|-+-++-    +.|+   |.-++.+|.+.|..+ 
T Consensus       323 ~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w----~v~~iY~~s~a~~~l~~~g~~~~  398 (517)
T COG1657         323 MVDPSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRW----GVCYIYGTSGALSALALVGETDE  398 (517)
T ss_pred             cccCCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceeeEE----EEEEEEehhhhhhhhhccCcccc
Confidence             000   0011122222222211 1   3568999999999999999765432    3333   444666666666654 


Q ss_pred             -ccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhh
Q psy15672        179 -LCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFW  215 (271)
Q Consensus       179 -~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w  215 (271)
                       ..-+++++.|+..+|.+ +||+..--...+|..|++-
T Consensus       399 ~~~~v~~~~~~l~~~~~~-~~Gw~e~~~~~~~~~~~~t  435 (517)
T COG1657         399 NEVLVRKLISWLVSKQMP-DGGWGEAKEAISDPVYTGT  435 (517)
T ss_pred             chHHHHHHHHHhhhcccc-CCCcccccccccccccccc
Confidence             23478999999999998 8999988777777777664

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family

Probab=97.02  E-value=0.0094  Score=52.66  Aligned_cols=73  Identities=15%  Similarity=0.166  Sum_probs=44.0

Q ss_pred             hhhHHHHHHHHHhcCCCCCCCCCCC----CCCC-----chHHHHHHHHHHHHhCCC-CcCCc----------CChHHHHH
Q psy15672         32 SADKSCVVNFLSQCQSPNGGFGGGP----GQDP-----HIAATYAAVNCLIILGTP-EAYNC----------INRPKLKQ   91 (271)
Q Consensus        32 ~~~~~~~i~~l~~~q~~dGGF~~~~----~~~~-----~~~~Ty~Av~~L~~lg~~-~~~~~----------~~~~~~~~   91 (271)
                      ....+++++||++.|+++|||....    +...     |-.+ ..++..|..+... +.+..          ...+++++
T Consensus        66 ~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am-~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid  144 (290)
T TIGR02474        66 RDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAM-VNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIE  144 (290)
T ss_pred             HHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHH-HHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHH
Confidence            3456789999999999999998642    1112     2111 1333444333211 00011          12578999


Q ss_pred             HHHhhcCCCCCeec
Q psy15672         92 FLQRLKAPDGGFHV  105 (271)
Q Consensus        92 ~l~~~q~~dGgf~~  105 (271)
                      ||++.|.++||+..
T Consensus       145 ~ILktQ~~~gg~~t  158 (290)
T TIGR02474       145 CILKTQVVQNGKLT  158 (290)
T ss_pred             HHHHhhcccCCcCC
Confidence            99999998886653

Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.

>PLN02279 ent-kaur-16-ene synthase

Probab=96.50  E-value=0.013  Score=58.80  Aligned_cols=168  Identities=17%  Similarity=0.113  Sum_probs=94.2

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCC----CCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhc---------CCCCC
Q psy15672         36 SCVVNFLSQCQSPNGGFGGGPGQ----DPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLK---------APDGG  102 (271)
Q Consensus        36 ~~~i~~l~~~q~~dGGF~~~~~~----~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q---------~~dGg  102 (271)
                      ..+++||+..|.+||+|+..+..    ..-+.+|.++|.+|.--+..    ...+++.+.||.+.-         .|- |
T Consensus        76 p~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~----~~~~~~gl~fi~~n~~~~~d~~~~~pv-G  150 (784)
T PLN02279         76 PECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVG----EEQINKGLQFIELNSASVTDEKQHKPI-G  150 (784)
T ss_pred             hHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcC----cccchhhHHHHHHHHHhhcccccCCCc-e
Confidence            57999999999999999964221    23568999999999877653    223466667777421         122 2


Q ss_pred             eecc-c---------CCCCCh-hHHHHHHHHH---HHhC--------cCCh--hhHHH---H--HHHHHHcccCCCCCCC
Q psy15672        103 FHVH-D---------GGEVDI-RGVYCALCVA---LLTQ--------VYSE--DLFNN---T--REWLTACQTYEGGFSG  153 (271)
Q Consensus       103 f~~~-~---------~~e~d~-~~ty~a~~~l---~ll~--------~~~~--~~~~~---~--~~~l~~~q~~dGGF~~  153 (271)
                      |... |         +-+-+. ....-.+...   .+..        .+..  -..+.   .  .+-|++.|..||.|..
T Consensus       151 fei~fP~ll~~a~~~gl~~~~~~~~l~~~~~~r~~~l~~~~~~~~~~~~~~l~~s~Egl~~~~dw~~v~~~q~~~Gs~~~  230 (784)
T PLN02279        151 FDIIFPGMIEYAKDLDLNLPLGSEVVDAMLHKRDLDLKSGGGSNTKGREAYLAYVSEGIGKLQDWEMVMKYQRKNGSLFN  230 (784)
T ss_pred             EEEehHHHHHHHHHcCCCCCCChHHHHHHHHhhhHHHhhcchhhcCCCcchHHHHHhhccccccHHHHHhhcCCCCCccc
Confidence            4321 1         000000 0000011000   0000        0000  00011   1  1225678889999987


Q ss_pred             CCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCC-CCCchhhhhhhhhHHHHHHH
Q psy15672        154 YPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNK-LVDGCYSFWQGGLFPLIYRS  226 (271)
Q Consensus       154 ~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k-~~D~cyt~w~~~~L~~l~~~  226 (271)
                      .|..      |.+++.     . .  . .+++.+||..-+..+.|   +-|+. +.|.+..-|++.+|.-||-.
T Consensus       231 SPsa------TAa~l~-----~-~--~-~~~~~~yL~~~~~~~~g---~vP~~yp~~~fe~l~lvd~L~rlGi~  286 (784)
T PLN02279        231 SPST------TAAAFS-----H-L--Q-NAGCLRYLRSLLQKFGN---AVPTVYPLDQYARLSMVDTLERLGID  286 (784)
T ss_pred             CcHH------HHHHHH-----c-c--C-ChHHHHHHHHHHHhcCC---CCCCCCcccHHHHhHHHHHHHHhCCc
Confidence            7753      444432     1 1  1 26899999887666444   45665 56788888999999888764

>KOG1366|consensus

Probab=96.38  E-value=0.057  Score=57.50  Aligned_cols=199  Identities=16%  Similarity=0.123  Sum_probs=109.7

Q ss_pred             CCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-------hcCCCCCCCCCCCC--CCCchHHHHHHHHHH
Q psy15672          2 SRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLS-------QCQSPNGGFGGGPG--QDPHIAATYAAVNCL   72 (271)
Q Consensus         2 p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~-------~~q~~dGGF~~~~~--~~~~~~~Ty~Av~~L   72 (271)
                      |...-.|.--..+..++++.=|...++ +.++.+++++++|.       .-+++||+|...-.  .....+-|.+.+.++
T Consensus       934 P~GcGEQnMi~faPni~v~~YL~~t~q-~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f 1012 (1436)
T KOG1366|consen  934 PYGCGEQNMINFAPNIYVLKYLPKTNQ-LTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVF 1012 (1436)
T ss_pred             CCCcccceeecccchhhHHHHHhhhhc-cChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHh
Confidence            333333333344455666666666665 34556677777764       45689999986433  445667777777766


Q ss_pred             HHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecc--------cCCCCCh--------------h----------------
Q psy15672         73 IILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVH--------DGGEVDI--------------R----------------  114 (271)
Q Consensus        73 ~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~--------~~~e~d~--------------~----------------  114 (271)
                      ......-..+..-..++++||...|.++|+|...        .++..+.              .                
T Consensus      1013 ~~a~~~i~id~~~i~~a~~wl~~~Qk~~GsF~e~~~v~~~~~qg~l~~~~~l~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 1092 (1436)
T KOG1366|consen 1013 SQAKEYIFIDPNVITQALNWLSQQQKENGSFKEVGEVLHNEMQGGLQDIVALTAIVLSVILDVDNASIQKAVAYLEESLD 1092 (1436)
T ss_pred             hhccCceEecHHHHHHHHHHHHHhhccCceEeccccccchhhhcCCCCcceeeeEeeeeeccchhhHHHHHHHHHhhccC
Confidence            6654321112233678999999999999999743        1122111              0                


Q ss_pred             ----HHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCC--------------CCCC-CCCchhhhhhhhhHHHhhc
Q psy15672        115 ----GVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFS--------------GYPG-FEAHGGYTFCGFAALCLLK  175 (271)
Q Consensus       115 ----~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~--------------~~p~-~es~~~~T~~al~aL~llg  175 (271)
                          .+|.+..+...+.........+.+.=+++.-...|+..              ..+. ...+...|.+|+-++.++.
T Consensus      1093 ~~~~~~~~~a~~ayAl~l~~sp~a~~~~~~l~~~a~~~~d~~~~~~~~~~~~~~~~~~~q~~s~~VE~tsYaLL~~~~~~ 1172 (1436)
T KOG1366|consen 1093 SGSMDVYTVAITAYALQLAKSPQAAKALAKLKSLARVEGDRRYWWASALKAKNAVKYSPQARSIDVETTAYALLAYLLLA 1172 (1436)
T ss_pred             ccccccchHHHHHHHHHhccCchHHHHHHhhhhhhcccCCceeeeeccccccCcccCCCccchhhccchHHHHHHHHHhc
Confidence                11111111111111111111222222333222233211              1111 1246778899999888887


Q ss_pred             cCCccCHHHHHHHHHhccCCCcCCcCCCC
Q psy15672        176 SEHLCDIKALLRWTTNRQMNFEGGFQGRT  204 (271)
Q Consensus       176 ~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~  204 (271)
                      ..+  -....++||.+.+.. .|||+.-.
T Consensus      1173 ~~~--~~~pivrWl~~qr~~-~GGf~STQ 1198 (1436)
T KOG1366|consen 1173 QVD--YALPIVRWLVEQRNA-LGGFSSTQ 1198 (1436)
T ss_pred             ccC--cCchhHhhhhhhhcc-cCceeehH
Confidence            764  456789999997776 89998754

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family

Probab=96.10  E-value=0.031  Score=49.44  Aligned_cols=110  Identities=15%  Similarity=0.120  Sum_probs=61.5

Q ss_pred             hHHHHHHHHhhcCCCCCeecc-cC-CCCChhHHH------HHHHHHHHh-C-cC-----C-------hhhHHHHHHHHHH
Q psy15672         86 RPKLKQFLQRLKAPDGGFHVH-DG-GEVDIRGVY------CALCVALLT-Q-VY-----S-------EDLFNNTREWLTA  143 (271)
Q Consensus        86 ~~~~~~~l~~~q~~dGgf~~~-~~-~e~d~~~ty------~a~~~l~ll-~-~~-----~-------~~~~~~~~~~l~~  143 (271)
                      .+++++||.+.|.++|||... |. +.-.-..||      -++..|..+ . ..     +       ...++++++||++
T Consensus        69 ~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILk  148 (290)
T TIGR02474        69 ARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECILK  148 (290)
T ss_pred             HHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999999853 21 121122222      222233222 1 10     0       2357899999999


Q ss_pred             cccCCCCC----CCC-------CCC----CC---chhhhhhhhhHHHhhccCCc---cCHHHHHHHHHhccCC
Q psy15672        144 CQTYEGGF----SGY-------PGF----EA---HGGYTFCGFAALCLLKSEHL---CDIKALLRWTTNRQMN  195 (271)
Q Consensus       144 ~q~~dGGF----~~~-------p~~----es---~~~~T~~al~aL~llg~~~~---~~~~~~~~wl~~~Q~~  195 (271)
                      .|-.+||.    +..       |-.    |.   -+..|.-.|.-|.-+..+..   ..++.++.|+.+..-+
T Consensus       149 tQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~i~~ai~~A~~W~~~~~i~  221 (290)
T TIGR02474       149 TQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPSAEIKEAIRAGVAWFDTSRIR  221 (290)
T ss_pred             hhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHCCCC
Confidence            99888754    321       111    11   12234444444444433321   1467899999987643

Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.

>PLN02592 ent-copalyl diphosphate synthase

Probab=95.96  E-value=0.069  Score=53.67  Aligned_cols=168  Identities=18%  Similarity=0.180  Sum_probs=93.1

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCC--CCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhc---C-CC-----CCee
Q psy15672         36 SCVVNFLSQCQSPNGGFGGGPG--QDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLK---A-PD-----GGFH  104 (271)
Q Consensus        36 ~~~i~~l~~~q~~dGGF~~~~~--~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q---~-~d-----Ggf~  104 (271)
                      ..+++||+..|.+||||+....  ...-+.+|.+||.+|..-+..    .-.+++.+.||.+.-   . ++     =||.
T Consensus       118 P~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~----~~~i~rGl~fi~~nl~~~~~~~~~~~pvGFe  193 (800)
T PLN02592        118 PSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLH----PEKCEKGMSFFRENICKLEDENAEHMPIGFE  193 (800)
T ss_pred             HHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhcc----HHHHHHHHHHHHHHHHHhhcCCCCCCCceEE
Confidence            4799999999999999997422  123468899999888775432    223578888888643   1 11     0233


Q ss_pred             cc-c--------------CCCCChhHHHHHHHHHHHhCcC--------Ch--hhHHHH--HH--HHHHcccCCCCCCCCC
Q psy15672        105 VH-D--------------GGEVDIRGVYCALCVALLTQVY--------SE--DLFNNT--RE--WLTACQTYEGGFSGYP  155 (271)
Q Consensus       105 ~~-~--------------~~e~d~~~ty~a~~~l~ll~~~--------~~--~~~~~~--~~--~l~~~q~~dGGF~~~p  155 (271)
                      .. |              ....++...+. .-.+.+-.+.        ..  -..+..  ++  -++..|..||+|...|
T Consensus       194 IifP~LLe~a~~lgL~~p~~~~~l~~i~~-~r~~kL~r~~~~~~~~~p~~llhslEgl~~~dw~~v~~~q~~~GS~~~SP  272 (800)
T PLN02592        194 VAFPSLLEIAKNLDIEVPYDSPVLKEIYA-QRNLKLTRIPKDIMHKVPTTLLHSLEGMPGLDWEKLLKLQCQDGSFLFSP  272 (800)
T ss_pred             eeHHHHHHHHHHcCCCCCCCcHHHHHHHH-hhHHHHhhCchhhhccCcchHHHHHhccccCCHHHHhcccCCCCCccCCc
Confidence            11 1              11111111100 0000010000        00  000111  12  3566788899998777


Q ss_pred             CCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCC-CCCchhhhhhhhhHHHHHHH
Q psy15672        156 GFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNK-LVDGCYSFWQGGLFPLIYRS  226 (271)
Q Consensus       156 ~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k-~~D~cyt~w~~~~L~~l~~~  226 (271)
                      ..      |.+++.     ..    -.+++.+||.+-...+.||   -|+. +.|...--|++-+|.-||-.
T Consensus       273 Sa------TAaaL~-----~~----~d~~cl~YL~~~~~k~~Gg---VP~vyP~d~fE~LwlVDtLqRLGIs  326 (800)
T PLN02592        273 SS------TAFALM-----QT----KDENCLEYLNKAVQRFNGG---VPNVYPVDLFEHIWAVDRLQRLGIS  326 (800)
T ss_pred             hH------HHHHHh-----cc----CchHHHHHHHHHHHHcCCC---CCCCCCCcHHHHHHHHHHHHHcCCc
Confidence            53      444432     11    1368899998766554444   5665 45677777999988877654

>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals

Probab=93.66  E-value=0.058  Score=48.52  Aligned_cols=111  Identities=19%  Similarity=0.194  Sum_probs=63.1

Q ss_pred             HHHHHHHcCCCCCh---------hhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHH
Q psy15672         19 ICHSLSLLDEPLSS---------ADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKL   89 (271)
Q Consensus        19 ~l~~L~lL~~~~~~---------~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~   89 (271)
                      ++.+|..+......         ...+++++.|.+.|.+||-||       |+++|--|+++|...+....-..-+..++
T Consensus       192 A~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~G-------NiySTglAmQAL~~~~~~~~~~~w~C~k~  264 (326)
T PF01122_consen  192 AVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFG-------NIYSTGLAMQALSVSPSPPSESEWNCQKA  264 (326)
T ss_dssp             HHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BS-------STTTHHHHHHHHTT-SS-SSHHHHHHHHH
T ss_pred             HHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCccc-------chhhHHHHHHHHhcCCCCCcchhhHHHHH
Confidence            45566666553221         124567788899999999998       46799999999998886421112357889


Q ss_pred             HHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCC
Q psy15672         90 KQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFS  152 (271)
Q Consensus        90 ~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~  152 (271)
                      .++|.+.. ++|.|...          ..+..+|-.|.-.+.-++..     .+|+.++|-+.
T Consensus       265 ~~~ll~~i-~~G~F~nP----------~a~aQiLPaL~gKTYLDv~~-----~~C~~~~~~~~  311 (326)
T PF01122_consen  265 LDALLKEI-SQGAFQNP----------MAIAQILPALNGKTYLDVNS-----VDCSSPDGNLN  311 (326)
T ss_dssp             HHHHHHHH-TTTTT-SH----------HHHHHHHHHHTT--GGGGGS-------SSS--EE--
T ss_pred             HHHHHHHh-hcCCCCCH----------HHHHHHHHHHcCCCccccCC-----CCCCCCCCccc
Confidence            99988854 58999742          13344554443223223322     46888877765

Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=92.86  E-value=2.5  Score=41.66  Aligned_cols=94  Identities=21%  Similarity=0.162  Sum_probs=52.7

Q ss_pred             hhhhHHHhhccCC-----ccCHHHHHHHHHhccCCC------cCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCCC
Q psy15672        166 CGFAALCLLKSEH-----LCDIKALLRWTTNRQMNF------EGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTC  234 (271)
Q Consensus       166 ~al~aL~llg~~~-----~~~~~~~~~wl~~~Q~~~------~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~  234 (271)
                      +.+++|+.+++.-     ..-.+++.+||.+.....      -+|=..-.+...|  |.|.+.+.|.+-+...       
T Consensus       415 lmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~rl~~~~~~G~a~~~g~leD--YA~~i~gll~lye~t~-------  485 (667)
T COG1331         415 LMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVDRLLRRYRGGEAAVAGLLED--YAFLILGLLALYEATG-------  485 (667)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcccchheeeecCcccccccchh--HHHHHHHHHHHHHhhC-------
Confidence            4677777666531     123578999999876531      0121122233444  6666666666544431       


Q ss_pred             CCCccccCHHHHHHHHHhhhCCCCCCcCCCCCCCC
Q psy15672        235 LDGHWLFHHRALQEYILICCQHFNGGLLDKPENMV  269 (271)
Q Consensus       235 ~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~p~~~~  269 (271)
                       +..|+--..+|.+-++..++++.|||-+.|+...
T Consensus       486 -d~~yL~~A~~L~~~~i~~f~d~~gGf~~t~~~~~  519 (667)
T COG1331         486 -DLAYLEKAIELADEAIADFWDDEGGFYDTPSDSE  519 (667)
T ss_pred             -cHHHHHHHHHHHHHHHHHhcCCCCCcccCCCccc
Confidence             1123344456666555578888899887665543

>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals

Probab=91.53  E-value=1.3  Score=40.05  Aligned_cols=85  Identities=15%  Similarity=0.063  Sum_probs=53.6

Q ss_pred             CchHHHHHHHHHHHHhCCCCcCC-----cC--ChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCCh-
Q psy15672         60 PHIAATYAAVNCLIILGTPEAYN-----CI--NRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSE-  131 (271)
Q Consensus        60 ~~~~~Ty~Av~~L~~lg~~~~~~-----~~--~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~-  131 (271)
                      -++.++..|+.+|.-+.......     .+  ..+++++.|.+.|.+||.|++       +.+|=-|+.+|...+.... 
T Consensus       184 ~sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~GN-------iySTglAmQAL~~~~~~~~~  256 (326)
T PF01122_consen  184 FSVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFGN-------IYSTGLAMQALSVSPSPPSE  256 (326)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BSS-------TTTHHHHHHHHTT-SS-SSH
T ss_pred             CCccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCcccc-------hhhHHHHHHHHhcCCCCCcc
Confidence            34666777888887665421110     01  245678888999999999973       4567677777777665322 


Q ss_pred             --hhHHHHHHHHHHcccCCCCCC
Q psy15672        132 --DLFNNTREWLTACQTYEGGFS  152 (271)
Q Consensus       132 --~~~~~~~~~l~~~q~~dGGF~  152 (271)
                        .+..++.++|++.. .+|.|.
T Consensus       257 ~~w~C~k~~~~ll~~i-~~G~F~  278 (326)
T PF01122_consen  257 SEWNCQKALDALLKEI-SQGAFQ  278 (326)
T ss_dssp             HHHHHHHHHHHHHHHH-TTTTT-
T ss_pred             hhhHHHHHHHHHHHHh-hcCCCC
Confidence              45788999999854 589996

Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.

>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins

Probab=89.39  E-value=11  Score=37.43  Aligned_cols=133  Identities=16%  Similarity=0.136  Sum_probs=89.8

Q ss_pred             ccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHH
Q psy15672          9 DASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPK   88 (271)
Q Consensus         9 d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~   88 (271)
                      ..+.+.-+||++.+|..|+.+++  +.+.+.+++.+.-.+.         .+++...|+|+.+...|+...  .  -..+
T Consensus        45 ~~~dLes~yyav~glk~Lg~~~~--~~~~~C~~~~~~~~~s---------~~~~e~lfya~~~~~~L~C~~--~--~~~~  109 (636)
T PF05817_consen   45 PSSDLESAYYAVLGLKLLGIKVP--DSKAACKFLKKALDES---------SNDLESLFYAASASKALKCKV--S--VSNE  109 (636)
T ss_pred             CcccHHHHHHHHhhHHHhCCCCC--ChhhHHHHHHHhhccc---------cchHHHHHHHHHHHhhcCCcc--c--CcHH
Confidence            46677889999999999998765  3778888888865431         146888999999999998641  1  2445


Q ss_pred             HHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCC-hhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhh
Q psy15672         89 LKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYS-EDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCG  167 (271)
Q Consensus        89 ~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~-~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~a  167 (271)
                      +.+-+...-.+|          +++...|.++.++..+|..- ..+.++.+.-|...+..|.          ....+-.|
T Consensus       110 ~~~~l~~~l~~~----------s~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~~~l~kdd----------s~~s~g~a  169 (636)
T PF05817_consen  110 VKSLLKAALSED----------SSVSQIYYAVSSLKLLGLKVDEADSDEVVKALQASLKKDD----------SLLSLGYA  169 (636)
T ss_pred             HHHHHHHHhcCC----------ccHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhcccc----------cHHHHHHH
Confidence            555555554443          34567999999999998542 3466777777777665432          22233446


Q ss_pred             hhHHHhhcc
Q psy15672        168 FAALCLLKS  176 (271)
Q Consensus       168 l~aL~llg~  176 (271)
                      +.+++.|+.
T Consensus       170 l~~aa~L~~  178 (636)
T PF05817_consen  170 LHAAAQLSK  178 (636)
T ss_pred             HHHHHhhcc
Confidence            666666654

The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex

>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=88.80  E-value=19  Score=33.12  Aligned_cols=167  Identities=16%  Similarity=0.180  Sum_probs=94.4

Q ss_pred             CccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCC----CchHHHHHHHHHHHHhCCCCc-CC
Q psy15672          8 LDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQD----PHIAATYAAVNCLIILGTPEA-YN   82 (271)
Q Consensus         8 ~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~----~~~~~Ty~Av~~L~~lg~~~~-~~   82 (271)
                      .+.|-+++.-.+-..|..+|.++++...+..++-+.+....||=|+-++...    +--..-++.+..+.+.++.+. ..
T Consensus       150 ~~nNW~lF~v~v~~~L~~~G~~~d~~~i~~~l~~~e~~Y~GdGWY~DG~~~~~DYYns~aih~y~l~~~~~~~~~~~~~~  229 (361)
T PF10022_consen  150 PDNNWLLFRVMVEAFLKKVGEEYDEERIDYDLERIEEWYLGDGWYSDGPEFQFDYYNSWAIHPYLLLYARLMGDEDPERA  229 (361)
T ss_pred             ccchhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhccCCccccCCccCCcchHHHHHHHHHHHHHHHhcccCHHHH
Confidence            4555566666667778888888888888999999999998888776555322    222233344555666665421 00


Q ss_pred             cCChHHHHHHHHhh---cCCCCCeecccCCCCChhHHHHHH---HHHHHhCcCC-----hh----hHHHHHHHHHHc-cc
Q psy15672         83 CINRPKLKQFLQRL---KAPDGGFHVHDGGEVDIRGVYCAL---CVALLTQVYS-----ED----LFNNTREWLTAC-QT  146 (271)
Q Consensus        83 ~~~~~~~~~~l~~~---q~~dGgf~~~~~~e~d~~~ty~a~---~~l~ll~~~~-----~~----~~~~~~~~l~~~-q~  146 (271)
                      ..-++++.+|....   ..+||.+-.  .|.| +.+-+.+.   +.+.+.+.++     .-    ...+.++|..+. ..
T Consensus       230 ~~~~~Ra~~fa~~~~~~f~~dG~~~~--~GRS-ltYRfA~~a~~~~~a~~~~lp~~~~~~g~vR~~l~~~lr~~~~~p~~  306 (361)
T PF10022_consen  230 ARYRQRAQRFAEDYERMFSPDGAAPP--FGRS-LTYRFAAFAFLAAAALAGVLPEPLISPGQVRRALSRVLRWWLEQPGI  306 (361)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcCC--cccc-HHHHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHHHHHHHHHhCCCC
Confidence            11245566665554   458887642  2222 22223333   3444445421     11    223445555554 33


Q ss_pred             --CCC----CCCCCCC--CC--CchhhhhhhhhHHHhhccC
Q psy15672        147 --YEG----GFSGYPG--FE--AHGGYTFCGFAALCLLKSE  177 (271)
Q Consensus       147 --~dG----GF~~~p~--~e--s~~~~T~~al~aL~llg~~  177 (271)
                        .||    ||.+..-  .|  +-.+.-|||..++..|+.+
T Consensus       307 f~~~G~LtiG~~~~~~~m~e~Y~~~gSpYwa~k~Fl~L~Lp  347 (361)
T PF10022_consen  307 FDEDGWLTIGFYGPNPPMAENYNSPGSPYWASKAFLPLGLP  347 (361)
T ss_pred             CCCCCCcCCCcCCCChhhhhccCCCCCHHHHHHHHHHhcCC
Confidence              345    5654211  12  4556789999999888764

>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function

Probab=88.17  E-value=10  Score=36.70  Aligned_cols=92  Identities=22%  Similarity=0.229  Sum_probs=47.3

Q ss_pred             hhhhhhhHHHhhccCC--ccCHHHHHHHHHhccCCCcCCcCCC--------CCCCC-Cc--hhhhhhhhhHHHHHHHhhh
Q psy15672        163 YTFCGFAALCLLKSEH--LCDIKALLRWTTNRQMNFEGGFQGR--------TNKLV-DG--CYSFWQGGLFPLIYRSLMK  229 (271)
Q Consensus       163 ~T~~al~aL~llg~~~--~~~~~~~~~wl~~~Q~~~~GGf~gr--------~~k~~-D~--cyt~w~~~~L~~l~~~~~~  229 (271)
                      |.+.+++-+..+-..+  ..-.++..+.+..++.-..||++..        +...+ +.  |-|+=++..+.+...+++.
T Consensus       238 y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~~~~~~EtCas~~~~~~~~~L~~~  317 (520)
T PF07944_consen  238 YLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPNRLAYAETCASVNMMKLARRLFRL  317 (520)
T ss_pred             hhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCcCCCCccccHHHHHHHHHHHHHhc
Confidence            3444444444443221  1134566666777665557998877        22222 22  4555556666666666544


Q ss_pred             cCCCCCCCccccCH--HHHHHHHHhhhCCCCCC
Q psy15672        230 AGDTCLDGHWLFHH--RALQEYILICCQHFNGG  260 (271)
Q Consensus       230 ~~~~~~~~~~~~~~--~~l~~~il~~~Q~~~GG  260 (271)
                      .++.     ...|.  +.+-+-|+ ..|+++||
T Consensus       318 tgd~-----~yaD~~Er~lyN~~l-a~~~~d~~  344 (520)
T PF07944_consen  318 TGDA-----RYADYYERALYNALL-AGQSPDGG  344 (520)
T ss_pred             CCCc-----hHHHHHHHHHhcccc-cccCCCCC
Confidence            4321     11222  55555566 46777665

One member of this family is annotated as a possible arabinosidase, but no references were found to back this.

>PLN02592 ent-copalyl diphosphate synthase

Probab=87.98  E-value=5.3  Score=40.56  Aligned_cols=116  Identities=19%  Similarity=0.136  Sum_probs=76.4

Q ss_pred             HHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCC-CCCeecccCCCCChhHHHHHH
Q psy15672         42 LSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAP-DGGFHVHDGGEVDIRGVYCAL  120 (271)
Q Consensus        42 l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~-dGgf~~~~~~e~d~~~ty~a~  120 (271)
                      +...|..||+|..+|.      +|.+++.     ..       -.+++.+||.+..+. +|+...  .-..|....-+.|
T Consensus       258 v~~~q~~~GS~~~SPS------aTAaaL~-----~~-------~d~~cl~YL~~~~~k~~GgVP~--vyP~d~fE~LwlV  317 (800)
T PLN02592        258 LLKLQCQDGSFLFSPS------STAFALM-----QT-------KDENCLEYLNKAVQRFNGGVPN--VYPVDLFEHIWAV  317 (800)
T ss_pred             HhcccCCCCCccCCch------HHHHHHh-----cc-------CchHHHHHHHHHHHHcCCCCCC--CCCCcHHHHHHHH
Confidence            5667888999998764      5655542     11       246889999987654 454321  1245666667888


Q ss_pred             HHHHHhCcCC--hhhHHHHHHHHHHcccCCC-CCCCCCCCCCchhhhhhhhhHHHhhccCC
Q psy15672        121 CVALLTQVYS--EDLFNNTREWLTACQTYEG-GFSGYPGFEAHGGYTFCGFAALCLLKSEH  178 (271)
Q Consensus       121 ~~l~ll~~~~--~~~~~~~~~~l~~~q~~dG-GF~~~p~~es~~~~T~~al~aL~llg~~~  178 (271)
                      -+|.-+|+..  ...++.++++|-++-..+| ||+. .....|...|.-+.-.|...|..-
T Consensus       318 DtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~-~~~~~Dld~TALaFRLLRqhGy~V  377 (800)
T PLN02592        318 DRLQRLGISRYFEPEIKECIDYVHRYWTENGICWAR-NSHVHDIDDTAMGFRLLRLHGHQV  377 (800)
T ss_pred             HHHHHcCCccccHHHHHHHHHHHHHHHhhcCccccc-CCCcCCHHHHHHHHHHHHHcCCCC
Confidence            8899898653  3567778888877543333 3431 122467888889999999999753

>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins

Probab=87.39  E-value=13  Score=37.00  Aligned_cols=127  Identities=17%  Similarity=0.176  Sum_probs=72.2

Q ss_pred             ccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHH
Q psy15672          9 DASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPK   88 (271)
Q Consensus         9 d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~   88 (271)
                      +.+.+..+||++.+|..||.+++..+.++++.-|...+..|          ..+.++-+|+.++..|+....+..+ .++
T Consensus       120 ~~s~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~~~l~kd----------ds~~s~g~al~~aa~L~~~a~l~~~-~~~  188 (636)
T PF05817_consen  120 EDSSVSQIYYAVSSLKLLGLKVDEADSDEVVKALQASLKKD----------DSLLSLGYALHAAAQLSKQADLADI-VER  188 (636)
T ss_pred             CCccHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhccc----------ccHHHHHHHHHHHHhhccchhhhHH-HHH
Confidence            34556669999999999998886667888888888777663          4566777788888888753111110 122


Q ss_pred             HHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHH-HhCcC---ChhhHHHHHHHHHHccc
Q psy15672         89 LKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVAL-LTQVY---SEDLFNNTREWLTACQT  146 (271)
Q Consensus        89 ~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~-ll~~~---~~~~~~~~~~~l~~~q~  146 (271)
                      +-+=+...-.-||.+-...++-+-+.....++-.|. ..|..   +.+-+-+..+||+++++
T Consensus       189 ieD~v~qaDEv~~~~LqFeggLs~TA~vv~g~~~la~~~~k~~~i~~dQivklanylLsrr~  250 (636)
T PF05817_consen  189 IEDAVAQADEVDGKYLQFEGGLSTTALVVRGIYKLADAVGKKPPIKEDQIVKLANYLLSRRS  250 (636)
T ss_pred             HHHHHHhhhhhcccceeecCCchhhHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCC
Confidence            222222222334444333333222222222222222 23432   23446678899999875

The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex

>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4

Probab=87.19  E-value=2.6  Score=37.45  Aligned_cols=116  Identities=20%  Similarity=0.251  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHhcCCCCCCCCCC-C---CCCCchHHHH---HHHHHHHHhCC----CCcCCcC----------ChHHHHHH
Q psy15672         34 DKSCVVNFLSQCQSPNGGFGGG-P---GQDPHIAATY---AAVNCLIILGT----PEAYNCI----------NRPKLKQF   92 (271)
Q Consensus        34 ~~~~~i~~l~~~q~~dGGF~~~-~---~~~~~~~~Ty---~Av~~L~~lg~----~~~~~~~----------~~~~~~~~   92 (271)
                      ..++.++||++.|.++|||... |   ++..|  .||   ..+.+|.+|.+    ......+          ..++++++
T Consensus        63 A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~--ITfNDdam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~c  140 (289)
T PF09492_consen   63 AFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDH--ITFNDDAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDC  140 (289)
T ss_dssp             HHHHHHHHHHHHS-TTS--BSECS--SGGGGS--EE-GGGHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCCCCccCCCCCCCCCc--eEEccHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999863 2   12222  222   22334434321    1111122          25789999


Q ss_pred             HHhhcC----CCCCeecccC-----------CC-CChhHHHHHHHHHHHhCcC--Ch---hhHHHHHHHHHHcccCCCCC
Q psy15672         93 LQRLKA----PDGGFHVHDG-----------GE-VDIRGVYCALCVALLTQVY--SE---DLFNNTREWLTACQTYEGGF  151 (271)
Q Consensus        93 l~~~q~----~dGgf~~~~~-----------~e-~d~~~ty~a~~~l~ll~~~--~~---~~~~~~~~~l~~~q~~dGGF  151 (271)
                      |.++|-    +--+|+...+           -| ..+...=++-.+..|+.+.  ++   ..++.+++|+.+..-.+.-+
T Consensus       141 iL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~v~~aI~~AvaWl~~~ki~g~~~  220 (289)
T PF09492_consen  141 ILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPSPEVLAAIEAAVAWLESVKIPGKRW  220 (289)
T ss_dssp             HHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--HHHHHHHHHHHHHHCCTSEEEEEE
T ss_pred             HHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCcCCCcee
Confidence            999997    2234543210           01 1111111233334444433  32   34678999999988765544

2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	271
1ft1_B	437	Crystal Structure Of Protein Farnesyltransferase At		1e-91
2zir_B	440	Crystal Structure Of Rat Protein Farnesyltransferas		2e-91
1ft2_B	401	Co-Crystal Structure Of Protein Farnesyltransferase		2e-91
1o1r_B	427	Structure Of Fpt Bound To Ggpp Length = 427		2e-91
1nl4_B	401	Crystal Structure Of Rat Farnesyl Transferase In Co		2e-91
1n95_B	402	Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranf		2e-91
1n94_B	397	Aryl Tetrahydropyridine Inhbitors Of Farnesyltransf		2e-91
3pz4_B	426	Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu		2e-91
1jcq_B	437	Crystal Structure Of Human Protein Farnesyltransfer		7e-91
2h6h_B	437	Y365f Protein Farnesyltransferase Mutant Complexed		7e-91
2h6g_B	437	W102t Protein Farnesyltransferase Mutant Complexed		1e-89
2h6i_B	437	W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTAN		1e-89
3euv_B	427	Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu		3e-89
3q73_B	520	Cryptococcus Neoformans Protein Farnesyltransferase		2e-43
3pz1_B	330	Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)		1e-23
1dce_B	331	Crystal Structure Of Rab Geranylgeranyltransferase		1e-23
1n4p_B	377	Protein Geranylgeranyltransferase Type-I Complexed		4e-23
3dra_B	390	Candida Albicans Protein Geranylgeranyltransferase-		2e-11

>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25 Angstroms Resolution Length = 437

Iteration: 1
 Score =  332 bits (852), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 159/261 (60%), Positives = 184/261 (70%), Gaps = 1/261 (0%)
Query: 6   NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
            CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP+        Q PH+A T
Sbjct: 94  ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 153
Query: 66  YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
           YAAVN L I+GT EAYN INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA L
Sbjct: 154 YAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 213
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
           T + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 273
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
           L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 333
Query: 245 ALQEYILICCQHFNGGLLDKP 265
           ALQEYIL+CCQ   GGLLDKP
Sbjct: 334 ALQEYILMCCQCPAGGLLDKP 354

>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase Complexed With A Benzofuran Inhibitor And Fpp Length = 440

Iteration: 1
 Score =  332 bits (851), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 159/261 (60%), Positives = 184/261 (70%), Gaps = 1/261 (0%)
Query: 6   NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
            CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP+        Q PH+A T
Sbjct: 97  ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 156
Query: 66  YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
           YAAVN L I+GT EAYN INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA L
Sbjct: 157 YAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 216
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
           T + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+L
Sbjct: 217 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 276
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
           L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +
Sbjct: 277 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 336
Query: 245 ALQEYILICCQHFNGGLLDKP 265
           ALQEYIL+CCQ   GGLLDKP
Sbjct: 337 ALQEYILMCCQCPAGGLLDKP 357

>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase Complexed With A Farnesyl Diphosphate Substrate Length = 401

Iteration: 1
 Score =  332 bits (850), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 159/261 (60%), Positives = 184/261 (70%), Gaps = 1/261 (0%)
Query: 6   NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
            CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP+        Q PH+A T
Sbjct: 73  ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 132
Query: 66  YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
           YAAVN L I+GT EAYN INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA L
Sbjct: 133 YAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 192
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
           T + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+L
Sbjct: 193 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 252
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
           L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +
Sbjct: 253 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 312
Query: 245 ALQEYILICCQHFNGGLLDKP 265
           ALQEYIL+CCQ   GGLLDKP
Sbjct: 313 ALQEYILMCCQCPAGGLLDKP 333

>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp Length = 427

Iteration: 1
 Score =  332 bits (850), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 159/261 (60%), Positives = 184/261 (70%), Gaps = 1/261 (0%)
Query: 6   NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
            CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP+        Q PH+A T
Sbjct: 94  ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 153
Query: 66  YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
           YAAVN L I+GT EAYN INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA L
Sbjct: 154 YAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 213
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
           T + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 273
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
           L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 333
Query: 245 ALQEYILICCQHFNGGLLDKP 265
           ALQEYIL+CCQ   GGLLDKP
Sbjct: 334 ALQEYILMCCQCPAGGLLDKP 354

>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex With A Potent Biphenyl Inhibitor Length = 401

Iteration: 1
 Score =  332 bits (850), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 159/261 (60%), Positives = 184/261 (70%), Gaps = 1/261 (0%)
Query: 6   NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
            CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP+        Q PH+A T
Sbjct: 72  ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 131
Query: 66  YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
           YAAVN L I+GT EAYN INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA L
Sbjct: 132 YAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 191
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
           T + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+L
Sbjct: 192 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 251
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
           L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +
Sbjct: 252 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 311
Query: 245 ALQEYILICCQHFNGGLLDKP 265
           ALQEYIL+CCQ   GGLLDKP
Sbjct: 312 ALQEYILMCCQCPAGGLLDKP 332

>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase: Glycine, Phenylalanine And Histidine Derivatives Length = 402

Iteration: 1
 Score =  332 bits (850), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 159/261 (60%), Positives = 184/261 (70%), Gaps = 1/261 (0%)
Query: 6   NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
            CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP+        Q PH+A T
Sbjct: 73  ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 132
Query: 66  YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
           YAAVN L I+GT EAYN INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA L
Sbjct: 133 YAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 192
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
           T + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+L
Sbjct: 193 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 252
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
           L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +
Sbjct: 253 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 312
Query: 245 ALQEYILICCQHFNGGLLDKP 265
           ALQEYIL+CCQ   GGLLDKP
Sbjct: 313 ALQEYILMCCQCPAGGLLDKP 333

>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase: Glycine, Phenylalanine And Histidine Derivates Length = 397

Iteration: 1
 Score =  332 bits (850), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 159/261 (60%), Positives = 184/261 (70%), Gaps = 1/261 (0%)
Query: 6   NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
            CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP+        Q PH+A T
Sbjct: 73  ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 132
Query: 66  YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
           YAAVN L I+GT EAYN INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA L
Sbjct: 133 YAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 192
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
           T + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+L
Sbjct: 193 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 252
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
           L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +
Sbjct: 253 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 312
Query: 245 ALQEYILICCQHFNGGLLDKP 265
           ALQEYIL+CCQ   GGLLDKP
Sbjct: 313 ALQEYILMCCQCPAGGLLDKP 333

>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10) In Complex With Bms3 And Lipid Substrate Fpp Length = 426

Iteration: 1
 Score =  332 bits (850), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 159/261 (60%), Positives = 184/261 (70%), Gaps = 1/261 (0%)
Query: 6   NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
            CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP+        Q PH+A T
Sbjct: 93  ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 152
Query: 66  YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
           YAAVN L I+GT EAYN INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA L
Sbjct: 153 YAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 212
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
           T + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+L
Sbjct: 213 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 272
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
           L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +
Sbjct: 273 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 332
Query: 245 ALQEYILICCQHFNGGLLDKP 265
           ALQEYIL+CCQ   GGLLDKP
Sbjct: 333 ALQEYILMCCQCPAGGLLDKP 353

>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And The Peptidomimetic Inhibitor L-739,750 Length = 437

Iteration: 1
 Score =  330 bits (845), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 158/261 (60%), Positives = 183/261 (70%), Gaps = 1/261 (0%)
Query: 6   NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
            CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP         Q PH+A T
Sbjct: 94  ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPT 153
Query: 66  YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
           YAAVN L I+GT EAY+ INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA L
Sbjct: 154 YAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 213
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
           T + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSL 273
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
           L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 333
Query: 245 ALQEYILICCQHFNGGLLDKP 265
           ALQEYIL+CCQ   GGLLDKP
Sbjct: 334 ALQEYILMCCQCPAGGLLDKP 354

>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A Farnesylated Ddptasacvls Peptide Product At 1.8a Length = 437

Iteration: 1
 Score =  330 bits (845), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 158/261 (60%), Positives = 183/261 (70%), Gaps = 1/261 (0%)
Query: 6   NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
            CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP         Q PH+A T
Sbjct: 94  ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPT 153
Query: 66  YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
           YAAVN L I+GT EAY+ INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA L
Sbjct: 154 YAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 213
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
           T + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSL 273
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
           L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 333
Query: 245 ALQEYILICCQHFNGGLLDKP 265
           ALQEYIL+CCQ   GGLLDKP
Sbjct: 334 ALQEYILMCCQCPAGGLLDKP 354

>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A Geranylgeranylated Ddptasacvls Peptide Product At 1.85a Resolution Length = 437

Iteration: 1
 Score =  325 bits (834), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 157/261 (60%), Positives = 182/261 (69%), Gaps = 1/261 (0%)
Query: 6   NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
            CLDASR  +CYWI HSL LLDEP+     + V  FL  CQSP         Q PH+A T
Sbjct: 94  ECLDASRPTLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPT 153
Query: 66  YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
           YAAVN L I+GT EAY+ INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA L
Sbjct: 154 YAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 213
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
           T + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSL 273
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
           L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 333
Query: 245 ALQEYILICCQHFNGGLLDKP 265
           ALQEYIL+CCQ   GGLLDKP
Sbjct: 334 ALQEYILMCCQCPAGGLLDKP 354

>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide Product At 3.0a Length = 437

Iteration: 1
 Score =  325 bits (834), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 157/261 (60%), Positives = 182/261 (69%), Gaps = 1/261 (0%)
Query: 6   NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
            CLDASR  +CYWI HSL LLDEP+     + V  FL  CQSP         Q PH+A T
Sbjct: 94  ECLDASRPTLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPT 153
Query: 66  YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
           YAAVN L I+GT EAY+ INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA L
Sbjct: 154 YAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 213
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
           T + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSL 273
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
           L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 333
Query: 245 ALQEYILICCQHFNGGLLDKP 265
           ALQEYIL+CCQ   GGLLDKP
Sbjct: 334 ALQEYILMCCQCPAGGLLDKP 354

>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10, W102t, Y154t) In Complex With Biotingpp Length = 427

Iteration: 1
 Score =  324 bits (831), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 157/261 (60%), Positives = 182/261 (69%), Gaps = 1/261 (0%)
Query: 6   NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
            CLDASR  +CYWI HSL LLDEP+     + V  FL  CQSP+        Q PH+A T
Sbjct: 94  ECLDASRPTLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 153
Query: 66  YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
            AAVN L I+GT EAYN INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA L
Sbjct: 154 TAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 213
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
           T + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 273
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
           L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 333
Query: 245 ALQEYILICCQHFNGGLLDKP 265
           ALQEYIL+CCQ   GGLLDKP
Sbjct: 334 ALQEYILMCCQCPAGGLLDKP 354

>pdb|3Q73|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase, Apo Enzyme Length = 520

Iteration: 1
 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/320 (37%), Positives = 153/320 (47%), Gaps = 61/320 (19%)
Query: 7   CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXX--XXXXXXQDPHIAA 64
            LDASR W+ +W  HSL LL   L    K  VV+ L    SP           Q PH+  
Sbjct: 83  SLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLP 142
Query: 65  TYAAVNCLIILGTPEAYN-----CINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCA 119
           TYA+V  L I G   +          R  + +F  R K PDGGF V +GGEVD+RG YC 
Sbjct: 143 TYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCL 202
Query: 120 LCVALLTQVYSEDLFNNTREWLTACQTYEGGF--------------SGYPG--------- 156
           L VA L  + + +L +N  ++++ACQTYEGGF              S +P          
Sbjct: 203 LVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSM 262
Query: 157 FEAHGGYTFCGFAALCLLKSEHL------CDIKALLRWTTNRQMNF--EGGFQGRTNKLV 208
            EAHGGYT C   +  LL S  L       D  A LRWT  +Q      GGF+GRTNKLV
Sbjct: 263 AEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLV 322
Query: 209 DGCYSFWQGGLFPL------------IYRSLMKAGDTCLDGHW--------LFHHRALQE 248
           DGCYS+W GG  P+            + +S ++  +   +G W        +F+  ALQE
Sbjct: 323 DGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGDWEDVPPIPPIFNRVALQE 382
Query: 249 YILICCQH---FNGGLLDKP 265
           + L+  Q      GGL DKP
Sbjct: 383 FTLVAAQQDPGSTGGLRDKP 402

>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In Complex With Bms3 Length = 330

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 115/255 (45%), Gaps = 21/255 (8%)
Query: 17  YWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAATYAAVNCLIILG 76
           YW    + L+ + L   +K  ++ F+  CQ            DPH+  T +AV  L +  
Sbjct: 50  YWGLTVMDLMGQ-LHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLY- 107
Query: 77  TPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNN 136
             ++ + IN  K+  ++Q L+  DG F     GE+D R  +CA  VA L  +   D  N 
Sbjct: 108 --DSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCA--VATLALLGKLDAINV 163
Query: 137 TR--EWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQM 194
            +  E++ +C  ++GGF   PG E+H G  +C    L +    H  +   L  W   RQ+
Sbjct: 164 EKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL 223
Query: 195 NFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICC 254
              GG  GR  KL D CYS+W      +I R            HW+   + L+ +IL C 
Sbjct: 224 P-SGGLNGRPEKLPDVCYSWWVLASLKIIGRL-----------HWIDREK-LRSFILACQ 270
Query: 255 QHFNGGLLDKPENMV 269
               GG  D+P +MV
Sbjct: 271 DEETGGFADRPGDMV 285

>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain Length = 331

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 115/255 (45%), Gaps = 21/255 (8%)
Query: 17  YWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAATYAAVNCLIILG 76
           YW    + L+ + L   +K  ++ F+  CQ            DPH+  T +AV  L +  
Sbjct: 51  YWGLTVMDLMGQ-LHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLY- 108
Query: 77  TPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNN 136
             ++ + IN  K+  ++Q L+  DG F     GE+D R  +CA  VA L  +   D  N 
Sbjct: 109 --DSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCA--VATLALLGKLDAINV 164
Query: 137 TR--EWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQM 194
            +  E++ +C  ++GGF   PG E+H G  +C    L +    H  +   L  W   RQ+
Sbjct: 165 EKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL 224
Query: 195 NFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICC 254
              GG  GR  KL D CYS+W      +I R            HW+   + L+ +IL C 
Sbjct: 225 P-SGGLNGRPEKLPDVCYSWWVLASLKIIGRL-----------HWIDREK-LRSFILACQ 271
Query: 255 QHFNGGLLDKPENMV 269
               GG  D+P +MV
Sbjct: 272 DEETGGFADRPGDMV 286

>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With Geranylgeranyl Diphosphate Length = 377

Iteration: 1
 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 90/168 (53%), Gaps = 10/168 (5%)
Query: 61  HIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGF-HVHDGGEVDIRGVYCA 119
           HIA TY  ++CLIILG  +  + +++      L+ L+  DG F  V +G E D+R VYCA
Sbjct: 121 HIAMTYTGLSCLIILG--DDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCA 178
Query: 120 LCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLL-KSEH 178
            C+  +   +S         ++    +Y+ G +   G E+HGG TFCG A+LCL+ K E 
Sbjct: 179 SCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEE 238
Query: 179 LCDIKAL---LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLI 223
           +   K L    RW   RQ N   G+ GR NK VD CYSFW G    L+
Sbjct: 239 VFSEKELNRIKRWCIMRQQN---GYHGRPNKPVDTCYSFWVGATLKLL 283

>pdb|3DRA|B Chain B, Candida Albicans Protein Geranylgeranyltransferase-I Complexed With Ggpp Length = 390

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 99/220 (45%), Gaps = 60/220 (27%)
Query: 60  PHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDG----GF------HVHDG- 108
           P++++T  A+  L+IL +P  +  INR K+  FL + +  DG    GF      +  +G 
Sbjct: 92  PNLSSTLFALYNLLILKSP-YHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGD 150
Query: 109 ----GEVDIRGVYCALCVALLTQVYSEDLFNNTREW-------LTACQTY-------EGG 150
               GE D+R  Y AL +  L + Y ++  NN RE        L + Q +        GG
Sbjct: 151 YKQYGEPDLRVCYMALLIRHLMK-YDDNNNNNNREDSNETDIDLISLQQFILDRININGG 209
Query: 151 FSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFE------------- 197
           FS     E+H G+TFC  A+L LL    L  +K+   W  +RQ+++              
Sbjct: 210 FSSTIMDESHLGFTFCAIASLKLLNYP-LEKLKSTKEWLIHRQVDYPENLYPKDGNGDGN 268
Query: 198 --------------GGFQGRTNKLVDGCYSFW-QGGLFPL 222
                         GGF GR NKL D CYS+W  G L+ +
Sbjct: 269 GNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNI 308

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	1e-100
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	1e-26
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	1e-22
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	5e-86
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	4e-09
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	6e-79
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	9e-33
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	1e-24
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	4e-14
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	3e-71
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	1e-30
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	2e-21
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	3e-66
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	1e-14
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	4e-05

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437

 Score =  300 bits (768), Expect = e-100
 Identities = 166/264 (62%), Positives = 191/264 (72%), Gaps = 1/264 (0%)

Query: 7   CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATY 66
           CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP GGFGGGPGQ PH+A TY
Sbjct: 95  CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTY 154

Query: 67  AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLT 126
           AAVN L I+GT EAY+ INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA LT
Sbjct: 155 AAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLT 214

Query: 127 QVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
            + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+LL
Sbjct: 215 NIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLL 274

Query: 187 RWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCL-DGHWLFHHRA 245
           +W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +A
Sbjct: 275 QWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQA 334

Query: 246 LQEYILICCQHFNGGLLDKPENMV 269
           LQEYIL+CCQ   GGLLDKP    
Sbjct: 335 LQEYILMCCQCPAGGLLDKPGKSR 358

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437

 Score =  106 bits (266), Expect = 1e-26
 Identities = 38/216 (17%), Positives = 76/216 (35%), Gaps = 19/216 (8%)

Query: 16  CYWICHSLSLLD--EPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLI 73
            Y   ++L ++   E     ++  ++ +L   + P+G F    G +  + + Y A +   
Sbjct: 153 TYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVAS 212

Query: 74  ILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDL 133
           +                +++ R +  +GG     G E      +C L   ++ +      
Sbjct: 213 LTNIITP---DLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLN 269

Query: 134 FNNTREWLTACQT-YEGGFSGYPGFEAHGGYTFCGFAALCLLK-------------SEHL 179
             +  +W+T+ Q  +EGGF G       G Y+F     L LL              S  +
Sbjct: 270 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWM 329

Query: 180 CDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFW 215
              +AL  +         GG   +  K  D  ++ +
Sbjct: 330 FHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCY 365

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437

 Score = 95.2 bits (236), Expect = 1e-22
 Identities = 38/184 (20%), Positives = 65/184 (35%), Gaps = 19/184 (10%)

Query: 14  WICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLI 73
              Y      SL +  ++         ++++CQ+  GG GG PG + H   T+  +  L+
Sbjct: 202 RSAYCAASVASLTNI-ITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALV 260

Query: 74  ILGTPEAYNCINRPKLKQFL-QRLKAPDGGFHVHDGGEVDIRGVYCAL-CVALLTQVY-- 129
           IL    +   +N   L Q++  R    +GGF       VD    +     + LL +    
Sbjct: 261 ILKRERS---LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHA 317

Query: 130 --------SEDLFN---NTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEH 178
                   S  +F+        L  CQ   GG    PG      +T    + L + +   
Sbjct: 318 QGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFG 377

Query: 179 LCDI 182
              +
Sbjct: 378 SGAM 381

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520

 Score =  265 bits (677), Expect = 5e-86
 Identities = 121/324 (37%), Positives = 152/324 (46%), Gaps = 61/324 (18%)

Query: 7   CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPG--QDPHIAA 64
            LDASR W+ +W  HSL LL   L    K  VV+ L    SP GGFGGGP   Q PH+  
Sbjct: 83  SLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLP 142

Query: 65  TYAAVNCLIILGTPEAYN-----CINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCA 119
           TYA+V  L I G   +          R  + +F  R K PDGGF V +GGEVD+RG YC 
Sbjct: 143 TYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCL 202

Query: 120 LCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGY-----------------------PG 156
           L VA L  + + +L +N  ++++ACQTYEGGF+                           
Sbjct: 203 LVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSM 262

Query: 157 FEAHGGYTFCGFAALCLLKSEHL------CDIKALLRWTTNRQMN--FEGGFQGRTNKLV 208
            EAHGGYT C   +  LL S  L       D  A LRWT  +Q      GGF+GRTNKLV
Sbjct: 263 AEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLV 322

Query: 209 DGCYSFWQGGLFPLIYRSLMKAGDTCL--------------------DGHWLFHHRALQE 248
           DGCYS+W GG  P+    + +     +                        +F+  ALQE
Sbjct: 323 DGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGDWEDVPPIPPIFNRVALQE 382

Query: 249 YILICCQHFN---GGLLDKPENMV 269
           + L+  Q      GGL DKP    
Sbjct: 383 FTLVAAQQDPGSTGGLRDKPGKRP 406

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520

 Score = 56.1 bits (134), Expect = 4e-09
 Identities = 33/234 (14%), Positives = 58/234 (24%), Gaps = 66/234 (28%)

Query: 14  WICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGG------------------- 54
              Y +    +LLD  ++      V  F+S CQ+  GGF                     
Sbjct: 197 RGTYCLLVVATLLDI-ITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSE 255

Query: 55  ----GPGQDPHIAATYAAVNCLIILG---TPEAYNCINRPKLKQFL---QRLKAPDGGFH 104
                   + H   T  ++N   +L     P     I+     ++    Q      GGF 
Sbjct: 256 PSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFR 315

Query: 105 ------------VHDGGEVDIRGVYCALCVALLTQVYS------------------EDLF 134
                          GG   +         +   +                       +F
Sbjct: 316 GRTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGDWEDVPPIPPIF 375

Query: 135 NN--TREWLTACQTYE----GGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDI 182
           N    +E+       +    GG    PG      +T    + L + + +     
Sbjct: 376 NRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQHKMSHSP 429

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score =  241 bits (615), Expect = 6e-79
 Identities = 71/263 (26%), Positives = 108/263 (41%), Gaps = 17/263 (6%)

Query: 7   CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATY 66
             +  R    YW    + L+ +     +K  ++ F+  CQ   GG     G DPH+  T 
Sbjct: 41  MSEYLRMSGVYWGLTVMDLMGQL-HRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTL 99

Query: 67  AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLT 126
           +AV  L +     + + IN  K+  ++Q L+  DG F     GE+D R  +CA+    L 
Sbjct: 100 SAVQILTLYD---SIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALL 156

Query: 127 QVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
                       E++ +C  ++GGF   PG E+H G  +C    L +    H  +   L 
Sbjct: 157 GKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLG 216

Query: 187 RWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRAL 246
            W   RQ+   GG  GR  KL D CYS+W      +            +          L
Sbjct: 217 WWLCERQLPS-GGLNGRPEKLPDVCYSWWVLASLKI------------IGRLHWIDREKL 263

Query: 247 QEYILICCQHFNGGLLDKPENMV 269
           + +IL C     GG  D+P +MV
Sbjct: 264 RSFILACQDEETGGFADRPGDMV 286

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score =  121 bits (304), Expect = 9e-33
 Identities = 48/211 (22%), Positives = 78/211 (36%), Gaps = 4/211 (1%)

Query: 5   GNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAA 64
            +                L+L D  +   +   VV ++   Q  +G F G    +     
Sbjct: 87  ASIGHDPHLLYTLSAVQILTLYDS-IHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRF 145

Query: 65  TYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVAL 124
           ++ AV  L +LG  +A   IN  K  +F+      DGGF    G E     +YC      
Sbjct: 146 SFCAVATLALLGKLDA---INVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLA 202

Query: 125 LTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKA 184
           +T    +   +    WL   Q   GG +G P       Y++   A+L ++   H  D + 
Sbjct: 203 ITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREK 262

Query: 185 LLRWTTNRQMNFEGGFQGRTNKLVDGCYSFW 215
           L  +    Q    GGF  R   +VD  ++ +
Sbjct: 263 LRSFILACQDEETGGFADRPGDMVDPFHTLF 293

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score = 99.8 bits (248), Expect = 1e-24
 Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 5/174 (2%)

Query: 14  WICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLI 73
              +    +L+LL + L + +    + F+  C + +GGFG  PG + H    Y     L 
Sbjct: 144 RFSFCAVATLALLGK-LDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLA 202

Query: 74  ILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDL 133
           I         +N   L  +L   + P GG +       D+   +  L    +        
Sbjct: 203 ITSQLHQ---VNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWID 259

Query: 134 FNNTREWLTACQTYE-GGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
               R ++ ACQ  E GGF+  PG      +T  G A L LL  E +  +  + 
Sbjct: 260 REKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVF 313

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score = 70.1 bits (171), Expect = 4e-14
 Identities = 36/188 (19%), Positives = 66/188 (35%), Gaps = 14/188 (7%)

Query: 78  PEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNT 137
            +A + +   K   ++    +    +       + + GVY  L V  L            
Sbjct: 12  SDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEI 71

Query: 138 REWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFE 197
             ++ +CQ   GG S   G + H  YT      L L  S H+ ++  ++ +  + Q   +
Sbjct: 72  LVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQ-KED 130

Query: 198 GGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHF 257
           G F G     +D  +SF       L            L      +     E++ + C +F
Sbjct: 131 GSFAGDIWGEIDTRFSFCAVATLAL------------LGKLDAINVEKAIEFV-LSCMNF 177

Query: 258 NGGLLDKP 265
           +GG   +P
Sbjct: 178 DGGFGCRP 185

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score =  222 bits (567), Expect = 3e-71
 Identities = 77/294 (26%), Positives = 117/294 (39%), Gaps = 49/294 (16%)

Query: 7   CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSP------------------ 48
            L+ SR  I ++    L +LD      +K  ++ ++   Q                    
Sbjct: 42  SLETSRLTIAFFALSGLDMLDSL-DVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSY 100

Query: 49  --------NGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPD 100
                          P    HIA TY  ++CLIILG  +  + +++      L+ L+  D
Sbjct: 101 LGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILG--DDLSRVDKEACLAGLRALQLED 158

Query: 101 GGFH-VHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEA 159
           G F  V +G E D+R VYCA C+  +   +S         ++    +Y+ G +   G E+
Sbjct: 159 GSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLES 218

Query: 160 HGGYTFCGFAALCLLKSEHLC----DIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFW 215
           HGG TFCG A+LCL+          ++  + RW   RQ   + G+ GR NK VD CYSFW
Sbjct: 219 HGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ---QNGYHGRPNKPVDTCYSFW 275

Query: 216 QGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKPENMV 269
            G    L            L      +    + YIL       GG    P++  
Sbjct: 276 VGATLKL------------LKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHP 317

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score =  116 bits (291), Expect = 1e-30
 Identities = 45/216 (20%), Positives = 77/216 (35%), Gaps = 10/216 (4%)

Query: 5   GNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGP-GQDPHIA 63
            +  D+    + Y     L +L + LS  DK   +  L   Q  +G F   P G +  + 
Sbjct: 114 AHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMR 173

Query: 64  ATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVA 123
             Y A     +L        ++  K   +++R  + D G     G E      +C +   
Sbjct: 174 FVYCASCICYMLNNWSG---MDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASL 230

Query: 124 LLTQ----VYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHL 179
            L      V+SE   N  + W       + G+ G P       Y+F   A L LLK    
Sbjct: 231 CLMGKLEEVFSEKELNRIKRWC--IMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQY 288

Query: 180 CDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFW 215
            + +    +  + Q    GGF    +   D  ++++
Sbjct: 289 TNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYF 324

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score = 91.4 bits (226), Expect = 2e-21
 Identities = 31/173 (17%), Positives = 64/173 (36%), Gaps = 5/173 (2%)

Query: 16  CYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIIL 75
            Y       +L+   S  D    ++++ +  S + G   G G + H  +T+  +  L ++
Sbjct: 175 VYCASCICYMLNN-WSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLM 233

Query: 76  GT-PEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCAL-CVALLTQVYSEDL 133
           G   E ++     ++K++         G+H      VD    +     + LL      + 
Sbjct: 234 GKLEEVFSEKELNRIKRWCIM--RQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNF 291

Query: 134 FNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
             N    L+      GGF+ +P       + + G   L L++   +C +   L
Sbjct: 292 EKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPAL 344

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390

 Score =  210 bits (535), Expect = 3e-66
 Identities = 73/332 (21%), Positives = 118/332 (35%), Gaps = 81/332 (24%)

Query: 7   CLDASRAWICYWICHSLSLLDEPLSSAD-------------KSCVVNFLSQCQSPNGGFG 53
             D+++  I Y+  H L L+ +   +                      +S   +      
Sbjct: 26  SEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRSTHYFQKT 85

Query: 54  GGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGF---------- 103
                 P++++T  A+  L+IL +   +  INR K+  FL + +  DG            
Sbjct: 86  NQKYDCPNLSSTLFALYNLLILKS-PYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYY 144

Query: 104 -----HVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTR-------------EWLTACQ 145
                     GE D+R  Y AL +  L +    +  NN               +++    
Sbjct: 145 NEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRI 204

Query: 146 TYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFE-------- 197
              GGFS     E+H G+TFC  A+L LL    L  +K+   W  +RQ+++         
Sbjct: 205 NINGGFSSTIMDESHLGFTFCAIASLKLLNY-PLEKLKSTKEWLIHRQVDYPENLYPKDG 263

Query: 198 -------------------GGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGH 238
                              GGF GR NKL D CYS+W  G    I  + +K         
Sbjct: 264 NGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNFIK--------- 314

Query: 239 WLFHHRALQEYILICCQH-FNGGLLDKPENMV 269
            L      ++Y+L   Q+   GG    P++  
Sbjct: 315 -LVDLNKAEDYLLNKTQNQLFGGFGRDPDSTP 345

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390

 Score = 72.2 bits (176), Expect = 1e-14
 Identities = 30/183 (16%), Positives = 50/183 (27%), Gaps = 28/183 (15%)

Query: 24  SLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTP----- 78
           +  D   +  D   +  F+    + NGGF      + H+  T+ A+  L +L  P     
Sbjct: 182 NREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYPLEKLK 241

Query: 79  -------------------EAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCA 119
                              +  N         +        GGF+  +    D    +  
Sbjct: 242 STKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWC 301

Query: 120 LCVALLTQVYSEDLFN---NTREWLTACQTYE-GGFSGYPGFEAHGGYTFCGFAALCLLK 175
                   V    L +        L   Q    GGF   P       +++   A+L L  
Sbjct: 302 TGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASLSLWN 361

Query: 176 SEH 178
            E 
Sbjct: 362 HEK 364

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631

 Score = 43.7 bits (102), Expect = 4e-05
 Identities = 32/167 (19%), Positives = 53/167 (31%), Gaps = 23/167 (13%)

Query: 21  HSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFG-------------------GGPGQDPH 61
           ++L L DE       +    ++   QS NGG+G                   G     P 
Sbjct: 386 NTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPS 445

Query: 62  IAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALC 121
              T   + C    G  +A+  I R    ++L+R + PDG +     G   + G    + 
Sbjct: 446 EDVTAHVLECFGSFGYDDAWKVIRR--AVEYLKREQKPDGSWF-GRWGVNYLYGTGAVVS 502

Query: 122 V-ALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCG 167
               +     E       +W+   Q  +GG+           Y   G
Sbjct: 503 ALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKG 549

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	271
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	100.0
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	100.0
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	100.0
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	100.0
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	100.0
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	100.0
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	100.0
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	100.0
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	100.0
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	100.0
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	99.91
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	99.9
1w6k_A	732	Lanosterol synthase; cyclase, cholesterol, monotop	99.9
1w6k_A	732	Lanosterol synthase; cyclase, cholesterol, monotop	99.87
1qqf_A	277	Protein (complement C3DG); alpha-alpha barrel, imm	99.68
2wy7_A	310	Complement C3D fragment; immune system, immune res	99.67
1hzf_A	367	Complement factor C4A; alpha-alpha 6 barrel, immun	99.46
1qqf_A	277	Protein (complement C3DG); alpha-alpha barrel, imm	99.41
2wy7_A	310	Complement C3D fragment; immune system, immune res	99.37
2pn5_A	1325	TEP1R, thioester-containing protein I; FULL-length	99.21
1hzf_A	367	Complement factor C4A; alpha-alpha 6 barrel, immun	99.17
2hr0_B	915	Complement C3 alpha' chain; complement component C	99.13
4acq_A	1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	99.12
2b39_A	1661	C3; thioester, immune defense, immune system; HET:	98.7
1r76_A	408	Pectate lyase; A-helical structure; 2.65A {Azospir	98.63
2bb6_A	414	TCII, TC II, transcobalamin II; alpha_6 - alpha_6	98.61
2pn5_A	1325	TEP1R, thioester-containing protein I; FULL-length	98.58
4fxk_B	767	Complement C4-A alpha chain; immune system, proteo	98.57
2hr0_B	915	Complement C3 alpha' chain; complement component C	98.52
1gxm_A	332	Pectate lyase; mechanism, elimination; 1.32A {Cell	98.49
4acq_A	1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	98.42
1r76_A	408	Pectate lyase; A-helical structure; 2.65A {Azospir	98.4
3cu7_A	1676	Complement C5; Mg domain, inflammation, anaphylato	98.34
2bb6_A	414	TCII, TC II, transcobalamin II; alpha_6 - alpha_6	98.3
3prx_B	1642	Cobra venom factor; immune system, complement, imm	98.22
2pmv_A	399	Gastric intrinsic factor; cobalamin transport prot	97.82
4fxk_B	767	Complement C4-A alpha chain; immune system, proteo	97.81
2b39_A	1661	C3; thioester, immune defense, immune system; HET:	97.81
3cu7_A	1676	Complement C5; Mg domain, inflammation, anaphylato	97.76
1gxm_A	332	Pectate lyase; mechanism, elimination; 1.32A {Cell	97.75
2pmv_A	399	Gastric intrinsic factor; cobalamin transport prot	97.49
3prx_B	1642	Cobra venom factor; immune system, complement, imm	97.4
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	96.84
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	96.68
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	93.85
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	93.31
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	92.61
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	92.48
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	91.67

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*

Probab=100.00  E-value=2.1e-70  Score=508.42  Aligned_cols=271  Identities=45%  Similarity=0.770  Sum_probs=243.3

Q ss_pred             CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCC--CCCCchHHHHHHHHHHHHhCCC
Q psy15672          1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGP--GQDPHIAATYAAVNCLIILGTP   78 (271)
Q Consensus         1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~--~~~~~~~~Ty~Av~~L~~lg~~   78 (271)
                      ||.+|+++|++|+|++||+|++|.+|+..++..+++++++||++||+++|||++.+  ++.+|+.+||+||++|.+++..
T Consensus        77 LP~~y~~~Dasr~wl~Yw~l~aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~  156 (520)
T 3q7a_B           77 LPGKFVSLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGND  156 (520)
T ss_dssp             BCGGGGGGGGGHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBS
T ss_pred             CChhhhhcccchHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCcc
Confidence            79999999999999999999999999988888899999999999999999999999  8999999999999999999974


Q ss_pred             ---CcCCcCC--hHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCC
Q psy15672         79 ---EAYNCIN--RPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSG  153 (271)
Q Consensus        79 ---~~~~~~~--~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~  153 (271)
                         +.++.+|  ++++++||+++|++||+|....+++.|+|+||||++++.++|..+.++++++++||++||++||||+.
T Consensus       157 ~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~kav~fI~scQn~DGGfGe  236 (520)
T 3q7a_B          157 SSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFAC  236 (520)
T ss_dssp             STTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCHHHHTTHHHHHHTTBCTTSSBCS
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccC
Confidence               2345678  99999999999999999999888999999999999999999998889999999999999999999999


Q ss_pred             -----------------------CCCCCCchhhhhhhhhHHHhhccCC------ccCHHHHHHHHHhccCC--CcCCcCC
Q psy15672        154 -----------------------YPGFEAHGGYTFCGFAALCLLKSEH------LCDIKALLRWTTNRQMN--FEGGFQG  202 (271)
Q Consensus       154 -----------------------~p~~es~~~~T~~al~aL~llg~~~------~~~~~~~~~wl~~~Q~~--~~GGf~g  202 (271)
                                             .|+.|+|++|||||||+|++|++.+      .+|.+++++||.+||..  ..|||+|
T Consensus       237 ~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~G  316 (520)
T 3q7a_B          237 ASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRG  316 (520)
T ss_dssp             CEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBS
T ss_pred             ccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccC
Confidence                                   6899999999999999999999963      57899999999999973  2599999


Q ss_pred             CCCCCCCchhhhhhhhhHHHHHHHhhhcC------------CCCCCCc--------cccCHHHHHHHHHhhhCCCC---C
Q psy15672        203 RTNKLVDGCYSFWQGGLFPLIYRSLMKAG------------DTCLDGH--------WLFHHRALQEYILICCQHFN---G  259 (271)
Q Consensus       203 r~~k~~D~cyt~w~~~~L~~l~~~~~~~~------------~~~~~~~--------~~~~~~~l~~~il~~~Q~~~---G  259 (271)
                      |+||++|+|||||++++|.||+.......            ++....+        .++|+++|++|||.+||++.   |
T Consensus       317 R~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~d~~~L~~yIL~~~Q~~~~~~G  396 (520)
T 3q7a_B          317 RTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTG  396 (520)
T ss_dssp             STTSCBCTTHHHHTGGGHHHHHHHHHHHHHHHC---------------------CCCSSCHHHHHHHHHHTTBCCTTSSC
T ss_pred             CCCCCCchhhhhHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccCHHHHHHHHHHHccCCCCCCC
Confidence            99999999999999999999998621100            0001112        36899999999998899997   9


Q ss_pred             CcCCCCCCCCCC
Q psy15672        260 GLLDKPENMVAS  271 (271)
Q Consensus       260 Gf~~~p~~~~d~  271 (271)
                      ||+|+|++++|+
T Consensus       397 Gf~DkPg~~pD~  408 (520)
T 3q7a_B          397 GLRDKPGKRPDQ  408 (520)
T ss_dssp             CBCSSTTSCCCH
T ss_pred             CCCCCCCCCcch
Confidence            999999999994

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=100.00  E-value=1.4e-69  Score=492.06  Aligned_cols=259  Identities=29%  Similarity=0.423  Sum_probs=234.5

Q ss_pred             CCCCCccCccChHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCCC----CCCCCCC-----C---CCCchHHHHH
Q psy15672          1 MSRVGNCLDASRAWICYWICHSLSLLDEP-LSSADKSCVVNFLSQCQSPN----GGFGGGP-----G---QDPHIAATYA   67 (271)
Q Consensus         1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~-~~~~~~~~~i~~l~~~q~~d----GGF~~~~-----~---~~~~~~~Ty~   67 (271)
                      ||++|+++|++|+|++||+|++|++|+.. +.+.+++++++||++||.++    |||++.+     +   +.+|+.+||+
T Consensus        20 Lp~~~~s~D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~   99 (390)
T 3dra_B           20 LPSTAQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLF   99 (390)
T ss_dssp             CCGGGGGGTTCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHH
T ss_pred             CCcchhhcchhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHH
Confidence            79999999999999999999999999985 35678999999999997653    9999985     4   6799999999


Q ss_pred             HHHHHHHhCCCCcCCcCChHHHHHHHHhhcC---C-CCCeeccc-----------CCCCChhHHHHHHHHHHHhCcCC--
Q psy15672         68 AVNCLIILGTPEAYNCINRPKLKQFLQRLKA---P-DGGFHVHD-----------GGEVDIRGVYCALCVALLTQVYS--  130 (271)
Q Consensus        68 Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~---~-dGgf~~~~-----------~~e~d~~~ty~a~~~l~ll~~~~--  130 (271)
                      ||++|.+||.+ .++.+|++++++||+++|+   + ||||...+           ++|.|+|++|||++++++|+..+  
T Consensus       100 Al~~L~ilg~~-~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~  178 (390)
T 3dra_B          100 ALYNLLILKSP-YHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNN  178 (390)
T ss_dssp             HHHHHHHTTCC-GGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC---
T ss_pred             HHHHHHHhCch-hhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCccc
Confidence            99999999986 4578999999999999999   7 99999654           68999999999999999999876  


Q ss_pred             -----------hhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCC----
Q psy15672        131 -----------EDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMN----  195 (271)
Q Consensus       131 -----------~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~----  195 (271)
                                 ..+++++++||++||++||||+..|+.|+|+++|||||+||++|++. ..+.+++++||.+||..    
T Consensus       179 ~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~-~~d~~~l~~WL~~RQ~~~~~~  257 (390)
T 3dra_B          179 NNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYP-LEKLKSTKEWLIHRQVDYPEN  257 (390)
T ss_dssp             ----------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCC-GGGCHHHHHHHHTTBCCCCTT
T ss_pred             ccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCcc-cccHHHHHHHHHHcCcccccc
Confidence                       56789999999999999999999999999999999999999999997 47899999999999983    


Q ss_pred             -----------------------CcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHh
Q psy15672        196 -----------------------FEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILI  252 (271)
Q Consensus       196 -----------------------~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~  252 (271)
                                             .+|||+|||||.+|+|||||++++|.+|+...          ..++|.+++++||+.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~~~~----------~~l~d~~~l~~yiL~  327 (390)
T 3dra_B          258 LYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNF----------IKLVDLNKAEDYLLN  327 (390)
T ss_dssp             TCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHCGGG----------GGGSCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhcccc----------ccccCHHHHHHHHHH
Confidence                                   26999999999999999999999999999521          126999999999997


Q ss_pred             hhCCC-CCCcCCCCCCCCCC
Q psy15672        253 CCQHF-NGGLLDKPENMVAS  271 (271)
Q Consensus       253 ~~Q~~-~GGf~~~p~~~~d~  271 (271)
                      |||++ .|||+|+|++++|+
T Consensus       328 c~Q~~~~GGf~d~Pg~~pD~  347 (390)
T 3dra_B          328 KTQNQLFGGFGRDPDSTPDP  347 (390)
T ss_dssp             TTBCTTTCSBCSSTTSCCCH
T ss_pred             hccCCCCCCcCCCCCCCCch
Confidence            67887 99999999999995

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...

Probab=100.00  E-value=1.1e-66  Score=481.93  Aligned_cols=271  Identities=61%  Similarity=1.129  Sum_probs=248.2

Q ss_pred             CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCc
Q psy15672          1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEA   80 (271)
Q Consensus         1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~   80 (271)
                      +|..|.+.|.+++|++||+|.+|.+|+..+++..++++++||+++|++||||++.+++++|+..||+||++|.++|..+.
T Consensus        89 ~~gg~~a~D~~r~~l~y~~l~aL~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~  168 (437)
T 2h6f_B           89 LTDAYECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEA  168 (437)
T ss_dssp             ECGGGGGGTTCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHH
T ss_pred             CCCCcccccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccCCCcchhHHHHHHHHHHHhCCccc
Confidence            37889999999999999999999999987788889999999999999999999999999999999999999999997422


Q ss_pred             CCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCc
Q psy15672         81 YNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAH  160 (271)
Q Consensus        81 ~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~  160 (271)
                      ++.++++++++||+++|++||||...+++++|+++||||+++|.++|..+.+.++++++||++||++||||+.+|+.++|
T Consensus       169 ~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh  248 (437)
T 2h6f_B          169 YDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAH  248 (437)
T ss_dssp             HTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCC
T ss_pred             ccchHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHHHHHHccCCCCCcCCCCCCCCC
Confidence            35689999999999999999999998899999999999999999999887788999999999999999999999999999


Q ss_pred             hhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCC-CCCCCcc
Q psy15672        161 GGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGD-TCLDGHW  239 (271)
Q Consensus       161 ~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~-~~~~~~~  239 (271)
                      +++|||||++|.++|+.+.++++++++||++||.+.+|||+|||||.+|+|||||++++|.+|+......++ .+....|
T Consensus       249 ~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~~~~~~  328 (437)
T 2h6f_B          249 GGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHW  328 (437)
T ss_dssp             HHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCC
T ss_pred             ccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCccCCCCCccchHHHHHHHHHHHHHhhhhhcccccccccccc
Confidence            999999999999999988889999999999999955899999999999999999999999999987433222 1112246


Q ss_pred             ccCHHHHHHHHHhhhCCCCCCcCCCCCCCCCC
Q psy15672        240 LFHHRALQEYILICCQHFNGGLLDKPENMVAS  271 (271)
Q Consensus       240 ~~~~~~l~~~il~~~Q~~~GGf~~~p~~~~d~  271 (271)
                      ++|+++|++||+.|||+++|||+|+|++++|+
T Consensus       329 l~d~~~l~~yIL~~~Q~~~GGf~d~Pg~~~D~  360 (437)
T 2h6f_B          329 MFHQQALQEYILMCCQCPAGGLLDKPGKSRDF  360 (437)
T ss_dssp             SSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCH
T ss_pred             cCCHHHHHHHHHHHccCCCCCccCCCCCCCCH
Confidence            79999999999988999999999999999994

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*

Probab=100.00  E-value=9.9e-67  Score=474.07  Aligned_cols=252  Identities=31%  Similarity=0.591  Sum_probs=232.5

Q ss_pred             CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---------CCCCCCCCCCC-------------
Q psy15672          1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQS---------PNGGFGGGPGQ-------------   58 (271)
Q Consensus         1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~---------~dGGF~~~~~~-------------   58 (271)
                      ||..|+++|++|+|++||+|++|++|+. .+..+++++++||+++|+         ++|||++++..             
T Consensus        36 lp~~~~~~d~~r~~~~yw~l~~L~lLg~-l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~  114 (377)
T 1n4q_B           36 LPERYSSLETSRLTIAFFALSGLDMLDS-LDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTA  114 (377)
T ss_dssp             ECGGGGGGGGGHHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCC
T ss_pred             CCccccccccchHHHHHHHHHHHHHhCC-CCccCHHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhcccccc
Confidence            6899999999999999999999999996 234458999999999999         68999987653             


Q ss_pred             ----CCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecc-cCCCCChhHHHHHHHHHHHhCcCChhh
Q psy15672         59 ----DPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVH-DGGEVDIRGVYCALCVALLTQVYSEDL  133 (271)
Q Consensus        59 ----~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~-~~~e~d~~~ty~a~~~l~ll~~~~~~~  133 (271)
                          .+|+.+||+||++|.++|..  ++.++++++++||+++|++||||... .+++.|+|+||||++++.++|..+.++
T Consensus       115 ~~~d~~~v~~T~~Al~~L~~lg~~--~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~~~~  192 (377)
T 1n4q_B          115 HPYDSGHIAMTYTGLSCLIILGDD--LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMD  192 (377)
T ss_dssp             CTTCCCCHHHHHHHHHHHHHTTCC--STTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSC
T ss_pred             ccCCCCCHHHHHHHHHHHHHhCcc--cchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCChHH
Confidence                48999999999999999964  56889999999999999999999986 689999999999999999999877789


Q ss_pred             HHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCcc----CHHHHHHHHHhccCCCcCCcCCCCCCCCC
Q psy15672        134 FNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLC----DIKALLRWTTNRQMNFEGGFQGRTNKLVD  209 (271)
Q Consensus       134 ~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~~----~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D  209 (271)
                      ++++++||++||++||||+..|+.|+|+++||||+++|.++++.+..    +++++++||.+||   +|||+|||||.+|
T Consensus       193 v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ---~gGf~GR~nK~~D  269 (377)
T 1n4q_B          193 MKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ---QNGYHGRPNKPVD  269 (377)
T ss_dssp             HHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB---SSSBCSSTTSCCC
T ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC---CCCcCCCCCcchh
Confidence            99999999999999999999999999999999999999999986543    7899999999999   6999999999999


Q ss_pred             chhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCC-CCCcCCCCCCCCCC
Q psy15672        210 GCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHF-NGGLLDKPENMVAS  271 (271)
Q Consensus       210 ~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~-~GGf~~~p~~~~d~  271 (271)
                      +|||||++++|.+|+..            .++|.+++++||+ .||++ +|||+|+|++++|+
T Consensus       270 ~CYSfWv~~~l~iL~~~------------~~~d~~~l~~fil-~cQ~~~~GGf~~~p~~~~D~  319 (377)
T 1n4q_B          270 TCYSFWVGATLKLLKIF------------QYTNFEKNRNYIL-STQDRLVGGFAKWPDSHPDA  319 (377)
T ss_dssp             TTHHHHHHHHHHHTTCG------------GGSCHHHHHHHHH-TTBCTTTCSBCSSTTSCCBH
T ss_pred             HHHHHHHHHHHHHhCCc------------cccCHHHHHHHHH-HHcCCCCCCcCCCCCCCCCH
Confidence            99999999999999875            2589999999999 59999 99999999999984

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*

Probab=100.00  E-value=4.2e-66  Score=464.08  Aligned_cols=253  Identities=30%  Similarity=0.540  Sum_probs=239.3

Q ss_pred             CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCc
Q psy15672          1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEA   80 (271)
Q Consensus         1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~   80 (271)
                      +|..|...|.+|+|++||+|++|.+|+. .+..+++++++||++||++||||++.+++++|+.+||+|+++|.+++.   
T Consensus        35 ~~~~~~~~d~~r~~~~yw~l~~L~lLg~-l~~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~l~~Ty~Al~~L~~l~~---  110 (331)
T 3dss_B           35 DDYEYCMSEYLRMSGVYWGLTVMDLMGQ-LHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDS---  110 (331)
T ss_dssp             CGGGSGGGGGGHHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTC---
T ss_pred             CCccceeccccHHHHHHHHHHHHHHhCC-CchhhHHHHHHHHhhhcCCCCCcCCCCCCCccHHHHHHHHHHHHHcCC---
Confidence            5788999999999999999999999996 466789999999999999999999999999999999999999999975   


Q ss_pred             CCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCc
Q psy15672         81 YNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAH  160 (271)
Q Consensus        81 ~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~  160 (271)
                      ++.+|++++++||.++|++||||...+++|+|+++||||+++|.++|..+.++++++++||++||++||||+.+|+.|+|
T Consensus       111 ~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh  190 (331)
T 3dss_B          111 IHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESH  190 (331)
T ss_dssp             GGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCC
T ss_pred             ccHHHHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCcCCCCcCCCCCCCCc
Confidence            46789999999999999999999998899999999999999999999887788999999999999999999999999999


Q ss_pred             hhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccc
Q psy15672        161 GGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWL  240 (271)
Q Consensus       161 ~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~  240 (271)
                      +++||||+++|.++|+.+.++++++++||.+||.+ +|||+|||+|.+|+|||||++++|.+|+..           + .
T Consensus       191 ~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~-dGGf~gr~~k~~D~cys~w~l~~L~llg~~-----------~-~  257 (331)
T 3dss_B          191 AGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLP-SGGLNGRPEKLPDVCYSWWVLASLKIIGRL-----------H-W  257 (331)
T ss_dssp             HHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCT-TSCBCSSTTCCCCHHHHHHHHHHHHHTTCG-----------G-G
T ss_pred             HHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCC-CCCcCCCCCCCCcchhHHHHHHHHHHcCCc-----------c-h
Confidence            99999999999999998888999999999999998 899999999999999999999999999865           1 4


Q ss_pred             cCHHHHHHHHHhhhCCCC-CCcCCCCCCCCCC
Q psy15672        241 FHHRALQEYILICCQHFN-GGLLDKPENMVAS  271 (271)
Q Consensus       241 ~~~~~l~~~il~~~Q~~~-GGf~~~p~~~~d~  271 (271)
                      +|.+++++||+ +||+++ |||+++||++||+
T Consensus       258 ~~~~~~~~fil-~cQ~~~~GGf~~~pg~~~d~  288 (331)
T 3dss_B          258 IDREKLRSFIL-ACQDEETGGFADRPGDMVDP  288 (331)
T ss_dssp             SCHHHHHHHHH-HTBCTTTCCBCSSTTSCCBH
T ss_pred             hhHHHHHHHHH-HhcCCCCCCcCCCCCCCCCH
Confidence            89999999999 599986 9999999999984

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*

Probab=100.00  E-value=1.6e-46  Score=336.93  Aligned_cols=214  Identities=22%  Similarity=0.306  Sum_probs=201.6

Q ss_pred             ccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHH
Q psy15672          9 DASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPK   88 (271)
Q Consensus         9 d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~   88 (271)
                      ..+|+..||.+|.+|.+++. +++.+++++++||.++|++||||++.++.++|++.||+|+.+|.++|..   +.+++++
T Consensus        91 ~~~~l~~Ty~Al~~L~~l~~-~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~---~~~~~~k  166 (331)
T 3dss_B           91 HDPHLLYTLSAVQILTLYDS-IHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKL---DAINVEK  166 (331)
T ss_dssp             SCBCHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCG---GGSCHHH
T ss_pred             CCccHHHHHHHHHHHHHcCC-ccHHHHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCC---CHHHHHH
Confidence            35789999999999999985 5667899999999999999999999888899999999999999999973   5678999


Q ss_pred             HHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhh
Q psy15672         89 LKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGF  168 (271)
Q Consensus        89 ~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al  168 (271)
                      +++||.++|++||||+..++.|+|..+||||+++|.+++..+..+++++++||.++|++||||+++|++++|++||||++
T Consensus       167 ~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~w~l  246 (331)
T 3dss_B          167 AIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVL  246 (331)
T ss_dssp             HHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHH
T ss_pred             HHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHHHHH
Confidence            99999999999999999999999999999999999999987777899999999999999999999999999999999999


Q ss_pred             hHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHH
Q psy15672        169 AALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRS  226 (271)
Q Consensus       169 ~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~  226 (271)
                      ++|.++|+.+.++++++++||+.||++..|||+.+|++.+|.+||||++++|.+++..
T Consensus       247 ~~L~llg~~~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls~~g~~  304 (331)
T 3dss_B          247 ASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEE  304 (331)
T ss_dssp             HHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence            9999999988889999999999999974599999999999999999999999999863

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*

Probab=100.00  E-value=8.1e-45  Score=330.11  Aligned_cols=214  Identities=21%  Similarity=0.285  Sum_probs=200.3

Q ss_pred             CccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCC-CCCCCchHHHHHHHHHHHHhCCCCcCCcCCh
Q psy15672          8 LDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGG-PGQDPHIAATYAAVNCLIILGTPEAYNCINR   86 (271)
Q Consensus         8 ~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~-~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~   86 (271)
                      .|.+++..||.+|.+|.+|+...+..+++++++||+++|++||+|.+. .+.+.+++.||+|+.+|.++|.   ...+++
T Consensus       117 ~d~~~v~~T~~Al~~L~~lg~~~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~---~~~~~v  193 (377)
T 1n4q_B          117 YDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNN---WSGMDM  193 (377)
T ss_dssp             TCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTC---GGGSCH
T ss_pred             CCCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcC---CChHHH
Confidence            467999999999999999998777788999999999999999999986 6789999999999999999997   356789


Q ss_pred             HHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChh----hHHHHHHHHHHcccCCCCCCCCCCCCCchh
Q psy15672         87 PKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSED----LFNNTREWLTACQTYEGGFSGYPGFEAHGG  162 (271)
Q Consensus        87 ~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~----~~~~~~~~l~~~q~~dGGF~~~p~~es~~~  162 (271)
                      +++++||++||++||||+..|+.|+|..+||||+++|.+++..+..    +++++++||.++|  +|||++||++.+|+|
T Consensus       194 ~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~nK~~D~C  271 (377)
T 1n4q_B          194 KKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTC  271 (377)
T ss_dssp             HHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCCTT
T ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCCCcchhHH
Confidence            9999999999999999999999999999999999999999865433    7899999999999  899999999999999


Q ss_pred             hhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHH
Q psy15672        163 YTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRS  226 (271)
Q Consensus       163 ~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~  226 (271)
                      ||||++++|.+|++.+.+|.+++++||+.+|.+..|||+.+|++.+|+.|||+++++|++++..
T Consensus       272 YSfWv~~~l~iL~~~~~~d~~~l~~fil~cQ~~~~GGf~~~p~~~~D~~HT~~~LagLsl~~~~  335 (377)
T 1n4q_B          272 YSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEES  335 (377)
T ss_dssp             HHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTTCSBCSSTTSCCBHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhCCccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999988899999999999999876799999999999999999999999999763

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=100.00  E-value=2.4e-44  Score=326.57  Aligned_cols=218  Identities=22%  Similarity=0.304  Sum_probs=196.7

Q ss_pred             CccChHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCC---C-CCCCCCCC-----------CCCCchHHHHHHHHH
Q psy15672          8 LDASRAWICYWICHSLSLLDEP-LSSADKSCVVNFLSQCQS---P-NGGFGGGP-----------GQDPHIAATYAAVNC   71 (271)
Q Consensus         8 ~d~~~~~~~y~~l~~L~lL~~~-~~~~~~~~~i~~l~~~q~---~-dGGF~~~~-----------~~~~~~~~Ty~Av~~   71 (271)
                      .+.+|++.||++|.+|.+|+.+ ++..+|+++++||.+||+   + ||||...+           +.+.|++.||+|+.+
T Consensus        89 ~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i  168 (390)
T 3dra_B           89 YDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLI  168 (390)
T ss_dssp             TSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHHHH
Confidence            4789999999999999999986 456789999999999999   7 89999543           578999999999999


Q ss_pred             HHHhCCCCc----------CCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHH
Q psy15672         72 LIILGTPEA----------YNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWL  141 (271)
Q Consensus        72 L~~lg~~~~----------~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l  141 (271)
                      +.+|+....          .+.+|++++++||.+||+.||||+..|+.|+|..+||||+++|.+++.+ ..+++++++||
T Consensus       169 ~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~-~~d~~~l~~WL  247 (390)
T 3dra_B          169 RHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYP-LEKLKSTKEWL  247 (390)
T ss_dssp             HHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCC-GGGCHHHHHHH
T ss_pred             HHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCcc-cccHHHHHHHH
Confidence            999997531          0158899999999999999999999999999999999999999999977 47889999999


Q ss_pred             HHccc----------------------------CCCCCCCCCCCCCchhhhhhhhhHHHhhcc--CCccCHHHHHHHHHh
Q psy15672        142 TACQT----------------------------YEGGFSGYPGFEAHGGYTFCGFAALCLLKS--EHLCDIKALLRWTTN  191 (271)
Q Consensus       142 ~~~q~----------------------------~dGGF~~~p~~es~~~~T~~al~aL~llg~--~~~~~~~~~~~wl~~  191 (271)
                      .++|.                            ++|||++||+|.+|+||+||++++|.+|++  .+.+|.+++.+||+.
T Consensus       248 ~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~~~~~~l~d~~~l~~yiL~  327 (390)
T 3dra_B          248 IHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLN  327 (390)
T ss_dssp             HTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHH
T ss_pred             HHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhccccccccCHHHHHHHHHH
Confidence            99997                            479999999999999999999999999995  457899999999999


Q ss_pred             ccCC-CcCCcCCCCCCCCCchhhhhhhhhHHHHHHH
Q psy15672        192 RQMN-FEGGFQGRTNKLVDGCYSFWQGGLFPLIYRS  226 (271)
Q Consensus       192 ~Q~~-~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~  226 (271)
                      ||+. ..|||+.+|++.+|++|||+++++|+++++.
T Consensus       328 c~Q~~~~GGf~d~Pg~~pD~yHT~~gLagLsl~~~~  363 (390)
T 3dra_B          328 KTQNQLFGGFGRDPDSTPDPMHSYLALASLSLWNHE  363 (390)
T ss_dssp             TTBCTTTCSBCSSTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             hccCCCCCCcCCCCCCCCchHHHHHHHHHHHHcCCc
Confidence            8543 3799999999999999999999999999873

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*

Probab=100.00  E-value=8.7e-43  Score=323.55  Aligned_cols=216  Identities=18%  Similarity=0.217  Sum_probs=195.4

Q ss_pred             CccChHHHHHHHHHHHHHcCCC-----CChhh--HHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCc
Q psy15672          8 LDASRAWICYWICHSLSLLDEP-----LSSAD--KSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEA   80 (271)
Q Consensus         8 ~d~~~~~~~y~~l~~L~lL~~~-----~~~~~--~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~   80 (271)
                      .+.+++..||++|.+|.+|+..     .+..+  ++++++||.++|++||+|.+..+.+.+++.||+|+.+|.+||..  
T Consensus       135 ~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~--  212 (520)
T 3q7a_B          135 SQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDII--  212 (520)
T ss_dssp             TSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCC--
T ss_pred             CCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCC--
Confidence            5689999999999999999975     33556  89999999999999999999878899999999999999999973  


Q ss_pred             CCcCChHHHHHHHHhhcCCCCCeec-----------------------ccCCCCChhHHHHHHHHHHHhCcC------Ch
Q psy15672         81 YNCINRPKLKQFLQRLKAPDGGFHV-----------------------HDGGEVDIRGVYCALCVALLTQVY------SE  131 (271)
Q Consensus        81 ~~~~~~~~~~~~l~~~q~~dGgf~~-----------------------~~~~e~d~~~ty~a~~~l~ll~~~------~~  131 (271)
                       ...+++++++||.+||++||||+.                       .|+.|+|..+||||+++|.+|+..      ..
T Consensus       213 -~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~  291 (520)
T 3q7a_B          213 -TPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLS  291 (520)
T ss_dssp             -CHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCC
T ss_pred             -ChHHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccccccc
Confidence             456789999999999999999998                       679999999999999999999875      35


Q ss_pred             hhHHHHHHHHHHccc---CCCCCCCCCCCCCchhhhhhhhhHHHhhccC-------------------------------
Q psy15672        132 DLFNNTREWLTACQT---YEGGFSGYPGFEAHGGYTFCGFAALCLLKSE-------------------------------  177 (271)
Q Consensus       132 ~~~~~~~~~l~~~q~---~dGGF~~~p~~es~~~~T~~al~aL~llg~~-------------------------------  177 (271)
                      .+.+++++||..+|.   ++|||++||++.+|+||+||++++|.+|++.                               
T Consensus       292 ~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  371 (520)
T 3q7a_B          292 IDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGDWEDVPPI  371 (520)
T ss_dssp             CCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHHHC---------------------C
T ss_pred             cCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhccccccccccccccccccccccccccccc
Confidence            689999999999996   4699999999999999999999999999864                               


Q ss_pred             -CccCHHHHHHHHH-hccCCC--cCCcCCCCCCCCCchhhhhhhhhHHHHHHH
Q psy15672        178 -HLCDIKALLRWTT-NRQMNF--EGGFQGRTNKLVDGCYSFWQGGLFPLIYRS  226 (271)
Q Consensus       178 -~~~~~~~~~~wl~-~~Q~~~--~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~  226 (271)
                       ..+|.+++.+||+ .+|.+.  .|||+++|+|.+|++|||+++++|+++++.
T Consensus       372 ~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl~qh~  424 (520)
T 3q7a_B          372 PPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQHK  424 (520)
T ss_dssp             CCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHHHHHHSC
T ss_pred             ccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCC
Confidence             2468999999999 578873  299999999999999999999999999875

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...

Probab=100.00  E-value=1.6e-42  Score=320.55  Aligned_cols=213  Identities=17%  Similarity=0.236  Sum_probs=195.7

Q ss_pred             ccChHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCCh
Q psy15672          9 DASRAWICYWICHSLSLLDEP--LSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINR   86 (271)
Q Consensus         9 d~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~   86 (271)
                      +.+++..||.+|.+|.+++..  .+..+++++++||+++|++||||++.++.++|++.||+|+.+|.++|..   ....+
T Consensus       146 ~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~---~~~~v  222 (437)
T 2h6f_B          146 QYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII---TPDLF  222 (437)
T ss_dssp             CCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCC---CTTTT
T ss_pred             CCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCC---ChHHH
Confidence            468999999999999999974  3445789999999999999999999888899999999999999999974   34568


Q ss_pred             HHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHccc-CCCCCCCCCCCCCchhhhh
Q psy15672         87 PKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQT-YEGGFSGYPGFEAHGGYTF  165 (271)
Q Consensus        87 ~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~-~dGGF~~~p~~es~~~~T~  165 (271)
                      +++++||.++|++||||+..++.++|..+||||+++|.++|..+..+++++++||++||. ++|||++||++.+|+||||
T Consensus       223 ~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSf  302 (437)
T 2h6f_B          223 EGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSF  302 (437)
T ss_dssp             TTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHH
T ss_pred             HHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCccCCCCCccchHHHH
Confidence            899999999999999999999999999999999999999998877889999999999998 8899999999999999999


Q ss_pred             hhhhHHHhhccC-------------CccCHHHHHHHHHh-ccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHH
Q psy15672        166 CGFAALCLLKSE-------------HLCDIKALLRWTTN-RQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYR  225 (271)
Q Consensus       166 ~al~aL~llg~~-------------~~~~~~~~~~wl~~-~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~  225 (271)
                      |++++|.+|++.             ..+|.+++.+||+. +|.+ +|||+.+|++.+|..|||+++++|+++++
T Consensus       303 w~~a~L~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yIL~~~Q~~-~GGf~d~Pg~~~D~yHT~y~L~gLsl~~~  375 (437)
T 2h6f_B          303 WQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCP-AGGLLDKPGKSRDFYHTCYCLSGLSIAQH  375 (437)
T ss_dssp             HTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCT-TSCBCSSTTSCCCHHHHHHHHHHHHHHHE
T ss_pred             HHHHHHHHHhhhhhcccccccccccccCCHHHHHHHHHHHccCC-CCCccCCCCCCCCHHHHHHHHHHHHHhcc
Confidence            999999999863             14789999999998 5665 89999999999999999999999999986

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*

Probab=99.91  E-value=6.3e-23  Score=198.67  Aligned_cols=242  Identities=17%  Similarity=0.085  Sum_probs=182.5

Q ss_pred             cChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCC-------------CCCCCC--CCCCCchHHHHHHHHHHHH
Q psy15672         10 ASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPN-------------GGFGGG--PGQDPHIAATYAAVNCLII   74 (271)
Q Consensus        10 ~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~d-------------GGF~~~--~~~~~~~~~Ty~Av~~L~~   74 (271)
                      .+.+|-+.|++.+|..+|...+...++++++||.++|..+             |||+..  +...+++..|..++.+|..
T Consensus       308 ~s~vwdta~~l~AL~~~G~~~~~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~  387 (631)
T 2sqc_A          308 ISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNT  387 (631)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTT
T ss_pred             CChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHH
Confidence            4679999999999999998654567899999999998753             444432  2345889999999999999


Q ss_pred             hCCCCc-CCcCChHHHHHHHHhhcCCCCCeecccC-------------------CCCChhHHHHHHHHHHHhCcCC-hhh
Q psy15672         75 LGTPEA-YNCINRPKLKQFLQRLKAPDGGFHVHDG-------------------GEVDIRGVYCALCVALLTQVYS-EDL  133 (271)
Q Consensus        75 lg~~~~-~~~~~~~~~~~~l~~~q~~dGgf~~~~~-------------------~e~d~~~ty~a~~~l~ll~~~~-~~~  133 (271)
                      ++.... ......+++++||.++|++||||.....                   ..+++..|..++.+|..++... .+.
T Consensus       388 ~~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~~~~  467 (631)
T 2sqc_A          388 LRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKV  467 (631)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHH
T ss_pred             cCCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCccHHH
Confidence            886310 0112367899999999999999964311                   0145667778888888777532 467


Q ss_pred             HHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCC-ccCHHHHHHHHHhccCCCcCCcCCCC--------
Q psy15672        134 FNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEH-LCDIKALLRWTTNRQMNFEGGFQGRT--------  204 (271)
Q Consensus       134 ~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~-~~~~~~~~~wl~~~Q~~~~GGf~gr~--------  204 (271)
                      ++++++||+++|++||||.++.+. .+...|..++.+|..+|... ...++++++||+++|.+ +|||...+        
T Consensus       468 i~rai~~L~~~Q~~DGsw~g~wg~-~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~-DGgWg~~~~sy~~~~~  545 (631)
T 2sqc_A          468 IRRAVEYLKREQKPDGSWFGRWGV-NYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNP-DGGWGEDCRSYEDPAY  545 (631)
T ss_dssp             HHHHHHHHHHHCCTTSCCCCSSBS-SHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCT-TSCCCCCGGGGTCGGG
T ss_pred             HHHHHHHHHHhcCCCCCCCCCCCC-CchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcC-CCCcCCcccccccccc
Confidence            899999999999999999665542 34445677788888887642 34678999999999998 89996532        


Q ss_pred             --CCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCCCCC
Q psy15672        205 --NKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKPE  266 (271)
Q Consensus       205 --~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~p~  266 (271)
                        ...+|+..|+|++.+|..++...            ....++..+||+ .+|+++|||...+.
T Consensus       546 ~~~~~s~v~~Ta~ALlaL~~ag~~~------------~~~i~rav~wL~-~~Q~~dGgw~~~~~  596 (631)
T 2sqc_A          546 AGKGASTPSQTAWALMALIAGGRAE------------SEAARRGVQYLV-ETQRPDGGWDEPYY  596 (631)
T ss_dssp             TTCSSCCHHHHHHHHHHHHHTTCSS------------SHHHHHHHHHHH-HHCCTTSCCCCCSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCC------------hHHHHHHHHHHH-hccCCCCCcCCCCc
Confidence              34678999999999998876430            134588899998 59999999987654

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*

Probab=99.90  E-value=9.2e-23  Score=197.51  Aligned_cols=198  Identities=16%  Similarity=0.186  Sum_probs=155.2

Q ss_pred             cChHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCCCCCCCCCCCC-------------------CCCchHHHHH
Q psy15672         10 ASRAWICYWICHSLSLLDEPL---SSADKSCVVNFLSQCQSPNGGFGGGPG-------------------QDPHIAATYA   67 (271)
Q Consensus        10 ~~~~~~~y~~l~~L~lL~~~~---~~~~~~~~i~~l~~~q~~dGGF~~~~~-------------------~~~~~~~Ty~   67 (271)
                      .+.+|.|.+++.+|..++...   .+...+++++||+++|++||||+..+.                   ..+++..|..
T Consensus       372 ~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~  451 (631)
T 2sqc_A          372 YPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAH  451 (631)
T ss_dssp             CCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHH
T ss_pred             CCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHH
Confidence            467999999999999998732   234577899999999999999975321                   1277889999


Q ss_pred             HHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHH---HHHHHHhCcC-ChhhHHHHHHHHHH
Q psy15672         68 AVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCA---LCVALLTQVY-SEDLFNNTREWLTA  143 (271)
Q Consensus        68 Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a---~~~l~ll~~~-~~~~~~~~~~~l~~  143 (271)
                      ++.+|..++...  ....++++++||.++|++||||....    ++.++|+.   +.+|..++.. ..+.++++++||++
T Consensus       452 vl~aL~~~g~~~--~~~~i~rai~~L~~~Q~~DGsw~g~w----g~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s  525 (631)
T 2sqc_A          452 VLECFGSFGYDD--AWKVIRRAVEYLKREQKPDGSWFGRW----GVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQ  525 (631)
T ss_dssp             HHHHHHTTTCCT--TSHHHHHHHHHHHHHCCTTSCCCCSS----BSSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCc--cHHHHHHHHHHHHHhcCCCCCCCCCC----CCCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence            999999998631  23457899999999999999995432    23455554   4445555532 24678999999999


Q ss_pred             cccCCCCCCCCC----------CCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCC---CCCc
Q psy15672        144 CQTYEGGFSGYP----------GFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNK---LVDG  210 (271)
Q Consensus       144 ~q~~dGGF~~~p----------~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k---~~D~  210 (271)
                      +|++||||+..+          ..++|+..|+|||.+|..+|..+...++++++||+++|++ +|||......   .+..
T Consensus       526 ~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~~~~~~i~rav~wL~~~Q~~-dGgw~~~~~tg~gf~~~  604 (631)
T 2sqc_A          526 HQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRP-DGGWDEPYYTGTGFPGD  604 (631)
T ss_dssp             TCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHCCT-TSCCCCCSCCEEEETTT
T ss_pred             hCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhccCC-CCCcCCCCccccccccc
Confidence            999999998643          4578999999999999999987555688999999999998 8999987654   5667


Q ss_pred             hhhh
Q psy15672        211 CYSF  214 (271)
Q Consensus       211 cyt~  214 (271)
                      ||--
T Consensus       605 ~yl~  608 (631)
T 2sqc_A          605 FYLG  608 (631)
T ss_dssp             EEEE
T ss_pred             ceee
Confidence            7653

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*

Probab=99.90  E-value=1.2e-22  Score=199.10  Aligned_cols=241  Identities=16%  Similarity=0.160  Sum_probs=179.8

Q ss_pred             ChHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCCC--------------CCCCCCCC--CCCchHHHHHHHHH
Q psy15672         11 SRAWICYWICHSLSLLDEPLS---SADKSCVVNFLSQCQSPN--------------GGFGGGPG--QDPHIAATYAAVNC   71 (271)
Q Consensus        11 ~~~~~~y~~l~~L~lL~~~~~---~~~~~~~i~~l~~~q~~d--------------GGF~~~~~--~~~~~~~Ty~Av~~   71 (271)
                      +.+|-+-|++.+|.-.+..-+   ....+++++||+++|..+              |||+....  ..+++..|..++.+
T Consensus       384 s~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~a  463 (732)
T 1w6k_A          384 SQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKA  463 (732)
T ss_dssp             CHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCCCCCCccccHHHHHHH
Confidence            778999999999998875321   235788999999999866              88876542  45799999999999


Q ss_pred             HHHhCCCC-----cCCcCChHHHHHHHHhhcCCCCCeecccC----------------CC-----CChhHHHHHHHHHHH
Q psy15672         72 LIILGTPE-----AYNCINRPKLKQFLQRLKAPDGGFHVHDG----------------GE-----VDIRGVYCALCVALL  125 (271)
Q Consensus        72 L~~lg~~~-----~~~~~~~~~~~~~l~~~q~~dGgf~~~~~----------------~e-----~d~~~ty~a~~~l~l  125 (271)
                      |..++...     .......+++++||.++|++||||.....                +.     +.+..|..++.+|..
T Consensus       464 L~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~  543 (732)
T 1w6k_A          464 VLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKY  543 (732)
T ss_dssp             HHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHH
T ss_pred             HHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHH
Confidence            98874310     01112357899999999999999963211                11     234456667777777


Q ss_pred             hCcC--------ChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCc-----cCHHHHHHHHHhc
Q psy15672        126 TQVY--------SEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHL-----CDIKALLRWTTNR  192 (271)
Q Consensus       126 l~~~--------~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~-----~~~~~~~~wl~~~  192 (271)
                      ++..        ....++++++||+++|++||||.++.+. .+...|++++.+|..+|....     ..++++++||+++
T Consensus       544 ~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg~-~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~  622 (732)
T 1w6k_A          544 FHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGV-CFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSR  622 (732)
T ss_dssp             HHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBS-SHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTT
T ss_pred             hccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCCC-ccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHh
Confidence            6531        1346889999999999999999876553 445568999999999998532     3578999999999


Q ss_pred             cCCCcCCcCCC----------CCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcC
Q psy15672        193 QMNFEGGFQGR----------TNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLL  262 (271)
Q Consensus       193 Q~~~~GGf~gr----------~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~  262 (271)
                      |.+ +|||...          +++.+|++.|.|++.+|..++..           + ....++..+||+ .+|+++|||.
T Consensus       623 Q~~-DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~ag~~-----------~-~~~i~r~v~wL~-~~Q~~~Ggf~  688 (732)
T 1w6k_A          623 QMA-DGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHP-----------D-IEAQERGVRCLL-EKQLPNGDWP  688 (732)
T ss_dssp             CCT-TSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCS-----------C-HHHHHHHHHHHH-HHCCTTSCCC
T ss_pred             ccc-CCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHcCCC-----------C-hHHHHHHHHHHH-HhcCCCCCcc
Confidence            998 8999864          35568999999999888766432           0 134577899998 5999999999


Q ss_pred             CCCC
Q psy15672        263 DKPE  266 (271)
Q Consensus       263 ~~p~  266 (271)
                      ..+.
T Consensus       689 ~~~~  692 (732)
T 1w6k_A          689 QENI  692 (732)
T ss_dssp             CCSC
T ss_pred             CCcc
Confidence            6553

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*

Probab=99.87  E-value=2.3e-21  Score=190.07  Aligned_cols=201  Identities=14%  Similarity=0.124  Sum_probs=158.1

Q ss_pred             cChHHHHHHHHHHHHHcCC-------CCChhhHHHHHHHHHhcCCCCCCCCCCCC---------------------CCCc
Q psy15672         10 ASRAWICYWICHSLSLLDE-------PLSSADKSCVVNFLSQCQSPNGGFGGGPG---------------------QDPH   61 (271)
Q Consensus        10 ~~~~~~~y~~l~~L~lL~~-------~~~~~~~~~~i~~l~~~q~~dGGF~~~~~---------------------~~~~   61 (271)
                      .+.+..|-++|.+|..+..       ..++...+++++||+++|++||||+....                     ..++
T Consensus       451 ~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~  530 (732)
T 1w6k_A          451 WIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTY  530 (732)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCB
T ss_pred             CCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCc
Confidence            4688999999999998742       34556788999999999999999964221                     2346


Q ss_pred             hHHHHHHHHHHHHhCCC-CcC----CcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCCh-----
Q psy15672         62 IAATYAAVNCLIILGTP-EAY----NCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSE-----  131 (271)
Q Consensus        62 ~~~Ty~Av~~L~~lg~~-~~~----~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~-----  131 (271)
                      +..|.+++.+|..++.. ...    ....++++++||.++|++||+|... .+..++..|++++.+|.++|....     
T Consensus       531 v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~-wg~~~~Y~T~~al~AL~~aG~~~~~~~~~  609 (732)
T 1w6k_A          531 VECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGS-WGVCFTYGTWFGLEAFACMGQTYRDGTAC  609 (732)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCS-SBSSHHHHHHHHHHHHHHTTCCCBTTBCC
T ss_pred             chHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCc-CCCccchHHHHHHHHHHHhCCcccccchh
Confidence            78999999999888631 000    0234788999999999999999764 345566778889999999886432     


Q ss_pred             hhHHHHHHHHHHcccCCCCCCCC----------CCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcC
Q psy15672        132 DLFNNTREWLTACQTYEGGFSGY----------PGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQ  201 (271)
Q Consensus       132 ~~~~~~~~~l~~~q~~dGGF~~~----------p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~  201 (271)
                      +.++++++||+++|++||||+..          ++.++++..|.||+.+|..++..+...++++++||+++|++ +|||.
T Consensus       610 ~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~ag~~~~~~i~r~v~wL~~~Q~~-~Ggf~  688 (732)
T 1w6k_A          610 AEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLP-NGDWP  688 (732)
T ss_dssp             HHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCT-TSCCC
T ss_pred             HHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCC-CCCcc
Confidence            57899999999999999999864          35678999999999999998876555688999999999998 89999


Q ss_pred             CCCC--CCCCchh
Q psy15672        202 GRTN--KLVDGCY  212 (271)
Q Consensus       202 gr~~--k~~D~cy  212 (271)
                      ..+.  .++..||
T Consensus       689 ~~~~~g~f~~~~~  701 (732)
T 1w6k_A          689 QENIAGVFNKSCA  701 (732)
T ss_dssp             CCSCCEEETTTEE
T ss_pred             CCcccccccchhh
Confidence            7653  3456665

>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A

Probab=99.68  E-value=2.3e-15  Score=131.58  Aligned_cols=189  Identities=17%  Similarity=0.130  Sum_probs=127.6

Q ss_pred             ChHHHHHHHHHHHHHcCCC--CChhh-------HHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcC
Q psy15672         11 SRAWICYWICHSLSLLDEP--LSSAD-------KSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAY   81 (271)
Q Consensus        11 ~~~~~~y~~l~~L~lL~~~--~~~~~-------~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~   81 (271)
                      ++++...+++.-|...+..  ++++.       .++.+++++++|++||||+..++.+++...|.+++.+|..+......
T Consensus         7 ~~~~P~~~~~~yL~~~~~~~~~~~~~~~~~~~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v   86 (277)
T 1qqf_A            7 IGMTPTVIAVHYLDQTEQWEKFGLEKRQEALELIKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAI   86 (277)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHCGGGHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHHHHHHHHHHHcCCcccCChhHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCC
Confidence            4455566666655555531  11222       34456669999999999999888889999999999999998753111


Q ss_pred             CcCChHHHHHHHHh-hcCCCCCeecccC-------C------CCChhHHHHHHHHHHHhC------cC-ChhhHHHHHHH
Q psy15672         82 NCINRPKLKQFLQR-LKAPDGGFHVHDG-------G------EVDIRGVYCALCVALLTQ------VY-SEDLFNNTREW  140 (271)
Q Consensus        82 ~~~~~~~~~~~l~~-~q~~dGgf~~~~~-------~------e~d~~~ty~a~~~l~ll~------~~-~~~~~~~~~~~  140 (271)
                      +....+++++||.+ .|++||+|.....       +      +++...|..++.+|...+      .. ..+.++++++|
T Consensus        87 ~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~  166 (277)
T 1qqf_A           87 DSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEY  166 (277)
T ss_dssp             CHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHH
Confidence            11124689999995 9999999975421       0      112333444444444332      11 13567899999


Q ss_pred             HHHcccC---------------------------------CCCCCCCCCCC-CchhhhhhhhhHHHhhccCCccCHHHHH
Q psy15672        141 LTACQTY---------------------------------EGGFSGYPGFE-AHGGYTFCGFAALCLLKSEHLCDIKALL  186 (271)
Q Consensus       141 l~~~q~~---------------------------------dGGF~~~p~~e-s~~~~T~~al~aL~llg~~~~~~~~~~~  186 (271)
                      |.++++.                                 +|++-..++.. .++..|.||+.+|...+..  ..+++++
T Consensus       167 L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~--~~~~~~v  244 (277)
T 1qqf_A          167 LEASYLNLQRPYTVAIAGYALALMNKLEEPYLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKDF--DSVPPVV  244 (277)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTCT--TSHHHHH
T ss_pred             HHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCCh--hhHHHHH
Confidence            9998764                                 44454444422 2556788999888887653  5789999


Q ss_pred             HHHHhccCCCcCCcCC
Q psy15672        187 RWTTNRQMNFEGGFQG  202 (271)
Q Consensus       187 ~wl~~~Q~~~~GGf~g  202 (271)
                      +||.++|++ +|||..
T Consensus       245 ~wL~~qq~~-~Ggw~s  259 (277)
T 1qqf_A          245 RWLNDERYY-GGGYGS  259 (277)
T ss_dssp             HHHHHCCCC-TTSTTC
T ss_pred             HHHHHccCC-CCCeec
Confidence            999999997 799987

>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A

Probab=99.67  E-value=1.7e-15  Score=134.62  Aligned_cols=199  Identities=15%  Similarity=0.069  Sum_probs=134.9

Q ss_pred             CCCCCccCccChHHHHHHHHHHHHHcCCC--CCh-------hhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHH
Q psy15672          1 MSRVGNCLDASRAWICYWICHSLSLLDEP--LSS-------ADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNC   71 (271)
Q Consensus         1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~--~~~-------~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~   71 (271)
                      +|.-.--|..++++...+++.-|...+..  +++       ...++.+++++++|++||||+..++.+++.+.|.+++.+
T Consensus        13 ~P~GC~EQ~~~~~~P~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~   92 (310)
T 2wy7_A           13 TPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKV   92 (310)
T ss_dssp             CCCSSTTHHHHHHHHHHHHHHHHHHHTCHHHHCTTHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHhHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHH
Confidence            35555556666777777777666666531  111       134456667999999999999888888999999999999


Q ss_pred             HHHhCCCCcCCcCChHHHHHHHHh-hcCCCCCeecccC-------CCC----ChhHHHH--HHHHHHHhC------cC-C
Q psy15672         72 LIILGTPEAYNCINRPKLKQFLQR-LKAPDGGFHVHDG-------GEV----DIRGVYC--ALCVALLTQ------VY-S  130 (271)
Q Consensus        72 L~~lg~~~~~~~~~~~~~~~~l~~-~q~~dGgf~~~~~-------~e~----d~~~ty~--a~~~l~ll~------~~-~  130 (271)
                      |..+......+....+++++||.+ .|++||+|.....       ++.    +...+++  ++.+|...+      .. .
T Consensus        93 l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~  172 (310)
T 2wy7_A           93 FSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSL  172 (310)
T ss_dssp             HHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcch
Confidence            999875311111124689999996 9999999975421       000    2334444  444444332      11 1


Q ss_pred             hhhHHHHHHHHHHcccC---------------------------------CCCCCCCCCCC-CchhhhhhhhhHHHhhcc
Q psy15672        131 EDLFNNTREWLTACQTY---------------------------------EGGFSGYPGFE-AHGGYTFCGFAALCLLKS  176 (271)
Q Consensus       131 ~~~~~~~~~~l~~~q~~---------------------------------dGGF~~~p~~e-s~~~~T~~al~aL~llg~  176 (271)
                      .+.++++++||.++|+.                                 +|++-..++.. .++..|.||+.+|...+.
T Consensus       173 ~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~  252 (310)
T 2wy7_A          173 PGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKD  252 (310)
T ss_dssp             HHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCC
Confidence            35678999999998763                                 34443344321 155678899999888875


Q ss_pred             CCccCHHHHHHHHHhccCCCcCCcCC
Q psy15672        177 EHLCDIKALLRWTTNRQMNFEGGFQG  202 (271)
Q Consensus       177 ~~~~~~~~~~~wl~~~Q~~~~GGf~g  202 (271)
                      .  ..++++++||.++|++ +|||..
T Consensus       253 ~--~~~~~~v~wL~~qq~~-~Ggw~s  275 (310)
T 2wy7_A          253 F--DFVPPVVRWLNEQRYY-GGGYGS  275 (310)
T ss_dssp             T--TTHHHHHHHHHHTTCC-CCSTTC
T ss_pred             h--hhHHHHHHHHHHccCC-CCCeec
Confidence            3  5789999999999987 799976

>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4

Probab=99.46  E-value=4.8e-13  Score=121.42  Aligned_cols=199  Identities=12%  Similarity=0.019  Sum_probs=128.1

Q ss_pred             CCCCccCccChHHHHHHHHHHHHHcCCC--CC-------hhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHH
Q psy15672          2 SRVGNCLDASRAWICYWICHSLSLLDEP--LS-------SADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCL   72 (271)
Q Consensus         2 p~~~~~~d~~~~~~~y~~l~~L~lL~~~--~~-------~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L   72 (271)
                      |.-+.-+-.++.....+++..|.-.+.-  ++       ....++.+++|++.|++||||+...+..++.+.|.+++.+|
T Consensus        51 P~Gc~EQ~~s~~~P~~~v~~~l~~~~~w~~~~~~~~~~~~~~i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l  130 (367)
T 1hzf_A           51 PRGCGEQTMIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVL  130 (367)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHTTCSTTSCTTHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHH
Confidence            3333334445555555666666553320  11       12356788999999999999998777678889999999999


Q ss_pred             HHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccC------------CCCChhHHHHHHHHHHHhCcC-----------
Q psy15672         73 IILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDG------------GEVDIRGVYCALCVALLTQVY-----------  129 (271)
Q Consensus        73 ~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~------------~e~d~~~ty~a~~~l~ll~~~-----------  129 (271)
                      ..++..-..+....+++++||.+.|++||+|.....            .++++..|..++.+|...+..           
T Consensus       131 ~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~  210 (367)
T 1hzf_A          131 SLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQ  210 (367)
T ss_dssp             HHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccccCCCCCCcccccchHHHHHHHHhhhccccccccchhhh
Confidence            888742101112367899999999999999976411            123355555666666544421           


Q ss_pred             -ChhhHHHHHHHHHHc--cc------------------------------------CCCC---CCCCC------------
Q psy15672        130 -SEDLFNNTREWLTAC--QT------------------------------------YEGG---FSGYP------------  155 (271)
Q Consensus       130 -~~~~~~~~~~~l~~~--q~------------------------------------~dGG---F~~~p------------  155 (271)
                       ....++++++||.++  ++                                    .+|+   |+...            
T Consensus       211 ~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~l~~~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~  290 (367)
T 1hzf_A          211 RVEASISKASSFLGEKASAGLLGAHAAAITAYALTLTKAPADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPA  290 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCEECSSCEECC---------------
T ss_pred             hhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhcCCCCccCCCCCccccccccccc
Confidence             123577899999776  21                                    1444   43211            


Q ss_pred             ---------CCCC-chhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCC
Q psy15672        156 ---------GFEA-HGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQG  202 (271)
Q Consensus       156 ---------~~es-~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~g  202 (271)
                               ...+ ++..|.|||.+|...+.. .....+.++||.+.|+. +|||..
T Consensus       291 ~~~~~~~~~~~~s~~vE~TAyaLLall~~~~~-~~~~~~iv~WL~~qrn~-~Ggw~s  345 (367)
T 1hzf_A          291 PRNPSDPMPQAPALWIETTAYALLHLLLHEGK-AEMADQASAWLTRQGSF-QGGFRS  345 (367)
T ss_dssp             ---------CCCHHHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTS-TTCSCS
T ss_pred             ccccccccCCCccchhHHHHHHHHHHHhccCc-hhhhHHHHHHHHhCcCC-CCCccc
Confidence                     0112 567889999998766532 34578999999998887 799976

>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A

Probab=99.41  E-value=1.6e-12  Score=113.53  Aligned_cols=163  Identities=13%  Similarity=0.034  Sum_probs=112.5

Q ss_pred             hHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCc---CChhhHHHHHHHHHH-cccCCCCCCCCCCC----
Q psy15672         86 RPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQV---YSEDLFNNTREWLTA-CQTYEGGFSGYPGF----  157 (271)
Q Consensus        86 ~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~---~~~~~~~~~~~~l~~-~q~~dGGF~~~p~~----  157 (271)
                      .++.++++.++|++||||+..++.++++..|-.++.+|..+..   .+...++++++||.+ .|.+||+|.....-    
T Consensus        40 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~  119 (277)
T 1qqf_A           40 IKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQE  119 (277)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGG
T ss_pred             HHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchh
Confidence            3456666999999999999887778888888888888887752   345678899999996 99999999765321    


Q ss_pred             ---------CCchhhhhhhhhHHHhhccC------C-ccCHHHHHHHHHhccCCC-------------------------
Q psy15672        158 ---------EAHGGYTFCGFAALCLLKSE------H-LCDIKALLRWTTNRQMNF-------------------------  196 (271)
Q Consensus       158 ---------es~~~~T~~al~aL~llg~~------~-~~~~~~~~~wl~~~Q~~~-------------------------  196 (271)
                               +++..+|+.++.+|...+..      . ...++++++||.++|.+.                         
T Consensus       120 ~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~  199 (277)
T 1qqf_A          120 MIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLT  199 (277)
T ss_dssp             GGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHH
T ss_pred             hcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence                     23355688888888877532      1 235678999999987642                         


Q ss_pred             -------cCCcCCCCCC-CCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCC
Q psy15672        197 -------EGGFQGRTNK-LVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLD  263 (271)
Q Consensus       197 -------~GGf~gr~~k-~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~  263 (271)
                             +|++-.+++. ..++.-|-|++-+|...+.              ....+++.+||+ ..|+++|||..
T Consensus       200 ~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--------------~~~~~~~v~wL~-~qq~~~Ggw~s  259 (277)
T 1qqf_A          200 KFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKD--------------FDSVPPVVRWLN-DERYYGGGYGS  259 (277)
T ss_dssp             HHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTC--------------TTSHHHHHHHHH-HCCCCTTSTTC
T ss_pred             HHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCC--------------hhhHHHHHHHHH-HccCCCCCeec
Confidence                   1222222221 1134444455544443321              246789999998 58999999974

>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A

Probab=99.37  E-value=7.9e-12  Score=110.82  Aligned_cols=162  Identities=13%  Similarity=0.025  Sum_probs=112.4

Q ss_pred             hHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCc---CChhhHHHHHHHHHH-cccCCCCCCCCCCC----
Q psy15672         86 RPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQV---YSEDLFNNTREWLTA-CQTYEGGFSGYPGF----  157 (271)
Q Consensus        86 ~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~---~~~~~~~~~~~~l~~-~q~~dGGF~~~p~~----  157 (271)
                      .++.++++.++|++||||+..++.++++..|-.++.+|..+..   .+...++++++||.+ .|.+||+|.....-    
T Consensus        56 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~  135 (310)
T 2wy7_A           56 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQE  135 (310)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGG
T ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHh
Confidence            3456667999999999999887777888888888888887753   345678899999996 99999999765321    


Q ss_pred             ---------CCchhhhhhhhhHHHhhccC------C-ccCHHHHHHHHHhccCCC-------------------------
Q psy15672        158 ---------EAHGGYTFCGFAALCLLKSE------H-LCDIKALLRWTTNRQMNF-------------------------  196 (271)
Q Consensus       158 ---------es~~~~T~~al~aL~llg~~------~-~~~~~~~~~wl~~~Q~~~-------------------------  196 (271)
                               +++..+|++++.+|...+..      . ...++++++||.++|.+.                         
T Consensus       136 ~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~  215 (310)
T 2wy7_A          136 MIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLN  215 (310)
T ss_dssp             GGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             hcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence                     23455688889888877542      1 224678999999987642                         


Q ss_pred             -------cCCcCCCCCC-CCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcC
Q psy15672        197 -------EGGFQGRTNK-LVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLL  262 (271)
Q Consensus       197 -------~GGf~gr~~k-~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~  262 (271)
                             +|++-.+++. ..++.-|-|++-+|...+.              ....+++.+||+ ..|+++|||.
T Consensus       216 ~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--------------~~~~~~~v~wL~-~qq~~~Ggw~  274 (310)
T 2wy7_A          216 KFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKD--------------FDFVPPVVRWLN-EQRYYGGGYG  274 (310)
T ss_dssp             HHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--------------TTTHHHHHHHHH-HTTCCCCSTT
T ss_pred             HHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCC--------------hhhHHHHHHHHH-HccCCCCCee
Confidence                   1222222221 1144445555555544321              246789999998 5899999996

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}

Probab=99.21  E-value=2.1e-10  Score=119.51  Aligned_cols=210  Identities=10%  Similarity=0.022  Sum_probs=136.2

Q ss_pred             CCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHH-------HHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q psy15672          2 SRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSC-------VVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLII   74 (271)
Q Consensus         2 p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~-------~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~   74 (271)
                      |....-|-.++.+...++..-|.-.+. +++..+++       .+++++++|++||||+..++..++.+.|.+++.+|..
T Consensus       835 PyGC~EQ~~s~~~p~~~~~~yl~~~~~-~~~~~~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~  913 (1325)
T 2pn5_A          835 PTGCGEQNMVKFVPNILVLDYLHAIGS-KEQHLIDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQT  913 (1325)
T ss_dssp             CCCSTTGGGGGTHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHH
Confidence            555555666676666666666655554 33333444       4556689999999999998888999999999999998


Q ss_pred             hCCCCcCCcCC---hHHHHHHHHhhcCCCCCeecccC-------CCCChhHHHHHHHHHHHhCc--C---ChhhHHHHHH
Q psy15672         75 LGTPEAYNCIN---RPKLKQFLQRLKAPDGGFHVHDG-------GEVDIRGVYCALCVALLTQV--Y---SEDLFNNTRE  139 (271)
Q Consensus        75 lg~~~~~~~~~---~~~~~~~l~~~q~~dGgf~~~~~-------~e~d~~~ty~a~~~l~ll~~--~---~~~~~~~~~~  139 (271)
                      +....  ..++   .+++++||.+.|++||+|.....       ++.+.+.+|++.+..+|+..  .   ....++++++
T Consensus       914 a~~~~--~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~  991 (1325)
T 2pn5_A          914 AVKYI--SDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMT  991 (1325)
T ss_dssp             HTTTC--SCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHH
T ss_pred             HHhhE--EcCCHHHHHHHHHHHHhhhccCCCccccccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHH
Confidence            86421  1133   56899999999999999965311       22233455555433344332  1   1235778889


Q ss_pred             HHHHcccC-CCCCCC-----------CC------------------------CCCCchhhhhhhhhHHHhhccCCccCHH
Q psy15672        140 WLTACQTY-EGGFSG-----------YP------------------------GFEAHGGYTFCGFAALCLLKSEHLCDIK  183 (271)
Q Consensus       140 ~l~~~q~~-dGGF~~-----------~p------------------------~~es~~~~T~~al~aL~llg~~~~~~~~  183 (271)
                      ||.+++.. +++++.           .+                        ...+....|.||+.+|...+..  ....
T Consensus       992 ~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~~L~~~~~~~~~~~~~~w~~~s~ve~tA~aLlall~~~~~--~~~~ 1069 (1325)
T 2pn5_A          992 YLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLIDMSFIDADKNERFWNTTNPIETTAYALLSFVMAEKY--TDGI 1069 (1325)
T ss_dssp             HHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHHHHHHTCEEETTTTEEECCSSSHHHHHHHHHHHHHHTTCH--HHHH
T ss_pred             HHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHHHHHhhhhhccCCCcccCCCCCchHHHHHHHHHHhhhccc--hhhH
Confidence            99988764 454321           00                        0123555678888887776643  3467


Q ss_pred             HHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHH
Q psy15672        184 ALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIY  224 (271)
Q Consensus       184 ~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~  224 (271)
                      +.++||++.|.. .|||..       +-.|-|++-+|....
T Consensus      1070 ~~v~wL~~q~~~-~g~w~s-------Tq~T~~aL~AL~~y~ 1102 (1325)
T 2pn5_A         1070 PVMNWLVNQRYV-TGSFPS-------TQDTFVGLKALTKMA 1102 (1325)
T ss_dssp             HHHHHHHTTCCT-TSSCSS-------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCC-CCCccc-------hHHHHHHHHHHHHHH
Confidence            899999988776 688875       334556665555443

>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4

Probab=99.17  E-value=2.5e-10  Score=103.46  Aligned_cols=107  Identities=18%  Similarity=0.107  Sum_probs=79.7

Q ss_pred             hHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCc---CChhhHHHHHHHHHHcccCCCCCCCCCCC-----
Q psy15672         86 RPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQV---YSEDLFNNTREWLTACQTYEGGFSGYPGF-----  157 (271)
Q Consensus        86 ~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~---~~~~~~~~~~~~l~~~q~~dGGF~~~p~~-----  157 (271)
                      .+++++||.+.|++||||+...+...+...|-.++-.|..++.   .+...++++++||+++|.+||+|..+...     
T Consensus        93 i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~  172 (367)
T 1hzf_A           93 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSM  172 (367)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGG
T ss_pred             HHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccc
Confidence            4668899999999999998776666777777777777776652   24567899999999999999999865221     


Q ss_pred             -------CCchhhhhhhhhHHHhhccCC------------ccCHHHHHHHHHhc
Q psy15672        158 -------EAHGGYTFCGFAALCLLKSEH------------LCDIKALLRWTTNR  192 (271)
Q Consensus       158 -------es~~~~T~~al~aL~llg~~~------------~~~~~~~~~wl~~~  192 (271)
                             +++...|.+++.+|...+...            ...+++.++||.++
T Consensus       173 ~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~  226 (367)
T 1hzf_A          173 QGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEK  226 (367)
T ss_dssp             GGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHh
Confidence                   234556889999998776421            11357888999766

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...

Probab=99.13  E-value=1.3e-09  Score=109.68  Aligned_cols=230  Identities=12%  Similarity=-0.006  Sum_probs=136.9

Q ss_pred             CCCCccCccChHHHHHHHHHHHHHcCCC--CChh-------hHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHH
Q psy15672          2 SRVGNCLDASRAWICYWICHSLSLLDEP--LSSA-------DKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCL   72 (271)
Q Consensus         2 p~~~~~~d~~~~~~~y~~l~~L~lL~~~--~~~~-------~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L   72 (271)
                      |....-|-.++++...+++.-|...+..  ++..       ..++.+++++..|++||||+..++..++.+.|.+++..|
T Consensus       259 PyGC~EQ~~s~~~P~l~~~~yL~~~~q~~~~~~~~~~~a~~~i~~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l  338 (915)
T 2hr0_B          259 PSGCGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVF  338 (915)
T ss_dssp             CCCSTTGGGGGTHHHHHHHHHHHHTTCHHHHCTHHHHHHHHHHHHHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHhhhhHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHH
Confidence            4444555566766666776666665531  1111       234456678899999999998887788999999999988


Q ss_pred             HHhCCCCcCCcCChHHHHHHHHh-hcCCCCCeeccc--------CC-----CCChhHHHHHHHHHHHhCcC-------Ch
Q psy15672         73 IILGTPEAYNCINRPKLKQFLQR-LKAPDGGFHVHD--------GG-----EVDIRGVYCALCVALLTQVY-------SE  131 (271)
Q Consensus        73 ~~lg~~~~~~~~~~~~~~~~l~~-~q~~dGgf~~~~--------~~-----e~d~~~ty~a~~~l~ll~~~-------~~  131 (271)
                      ..+......+....+++++||.+ .|.+||+|....        ++     +++...|..++.+|...+..       ..
T Consensus       339 ~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~  418 (915)
T 2hr0_B          339 SLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLP  418 (915)
T ss_dssp             HTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHH
T ss_pred             HHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccch
Confidence            87764211111125779999995 999999996431        11     12344444555566555432       13


Q ss_pred             hhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCC-cCCCCCCCCCc
Q psy15672        132 DLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGG-FQGRTNKLVDG  210 (271)
Q Consensus       132 ~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GG-f~gr~~k~~D~  210 (271)
                      ..+.++++||.+.+..   .       .++......-.+|.+.|..    .+.+++.|.....  .|. |.+......|+
T Consensus       419 ~~i~~A~~yL~~~~~~---~-------~~~y~~a~layAL~l~g~~----a~~~l~~L~~~~~--~~~~w~~~~~~~~~v  482 (915)
T 2hr0_B          419 GSITKAGDFLEANYMN---L-------QRSYTVAIAGYALAQMGRL----KGPLLNKFLTTAK--DKNRWEDPGKQLYNV  482 (915)
T ss_dssp             HHHHHHHHHHHHHGGG---C-------CSHHHHHHHHHHHHTTTCC----CHHHHHHHHHTSB--TTTBCCCSSCHHHHH
T ss_pred             HHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHHcCCh----HHHHHHHHHhhcc--CCCCCCCCCCCccch
Confidence            4677899999998753   1       1111112222255566654    3566777766432  233 33211112244


Q ss_pred             hhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcC
Q psy15672        211 CYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLL  262 (271)
Q Consensus       211 cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~  262 (271)
                      --|-|++-+|...+.              .-...++.+||+ ..|+.+|||.
T Consensus       483 e~TayaLlall~~~~--------------~~~~~~~v~wL~-~qq~~~Ggw~  519 (915)
T 2hr0_B          483 EATSYALLALLQLKD--------------FDFVPPVVRWLN-EQRYYGGGYG  519 (915)
T ss_dssp             HHHHHHHHHHHHTTC--------------TTTHHHHHHHHH-TCCCSSSSCC
T ss_pred             HHHHHHHHHHHhcCC--------------hhhHHHHHHHHH-hcccCCCCcc
Confidence            455555555544322              124678889998 5788899996

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}

Probab=99.12  E-value=1.1e-09  Score=114.66  Aligned_cols=216  Identities=12%  Similarity=0.065  Sum_probs=140.6

Q ss_pred             CCCCCccCccChHHHHHHHHHHHHHcCCCCChhh-------HHHHHHHHHhcCCCCCCCCCCCC----CCCchHHHHHHH
Q psy15672          1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSAD-------KSCVVNFLSQCQSPNGGFGGGPG----QDPHIAATYAAV   69 (271)
Q Consensus         1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~-------~~~~i~~l~~~q~~dGGF~~~~~----~~~~~~~Ty~Av   69 (271)
                      +|.-..-|--++++...+++.-|...+. ++++.       .++.+++++++|++||||+..+.    ..++.+.|.+++
T Consensus       945 yPyGC~EQ~ms~~~P~l~~~~yL~~t~q-~~~~~~~~a~~~i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~ 1023 (1451)
T 4acq_A          945 MPYGCGEXNMVLFAPNIYVLDYLNETQQ-LTPEIKSKAIGYLNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVL 1023 (1451)
T ss_dssp             CCCSSTTTTHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHH
T ss_pred             CCCCchhhhhhhhhhHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHH
Confidence            3555555666666666666666665554 33322       34567899999999999997653    458899999999


Q ss_pred             HHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecc--------cCC-CCChhHHHHHHHHHHHhCcC-ChhhHHHHHH
Q psy15672         70 NCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVH--------DGG-EVDIRGVYCALCVALLTQVY-SEDLFNNTRE  139 (271)
Q Consensus        70 ~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~--------~~~-e~d~~~ty~a~~~l~ll~~~-~~~~~~~~~~  139 (271)
                      ..|......-..+....+++++||.+.|++||+|...        .++ +.++..|..++.+|...|.. ....++++++
T Consensus      1024 ~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~ 1103 (1451)
T 4acq_A         1024 KTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALF 1103 (1451)
T ss_dssp             HHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHH
T ss_pred             HHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccchhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHH
Confidence            9998887531112223678999999999999999742        122 34566677777777777653 2345777888


Q ss_pred             HHHHc------------------------------c------------cCCCC---CCCCC------------C-CCCch
Q psy15672        140 WLTAC------------------------------Q------------TYEGG---FSGYP------------G-FEAHG  161 (271)
Q Consensus       140 ~l~~~------------------------------q------------~~dGG---F~~~p------------~-~es~~  161 (271)
                      ||.++                              +            ..+||   |+...            . ....+
T Consensus      1104 ~L~~~~~~~~~~~~~~~~y~~AllAyAlal~g~~~~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~s~~v 1183 (1451)
T 4acq_A         1104 CLESAWKTAQEGDHGSHVYTKALLAYAFALAGNQDKRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAPSAEV 1183 (1451)
T ss_dssp             HHHHHHHHHTSSCSSSTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTTGGGG
T ss_pred             HHHHhhhhcccccccCChHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccCCceecCCCCCCccccccccccCCchHHH
Confidence            87765                              1            12455   32211            1 12356


Q ss_pred             hhhhhhhhHHHhhccC----CccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHH
Q psy15672        162 GYTFCGFAALCLLKSE----HLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPL  222 (271)
Q Consensus       162 ~~T~~al~aL~llg~~----~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~  222 (271)
                      ..|.+||.+|..++..    +.....+.++||.+.|+. .|||..--    |+...+.+++-+..
T Consensus      1184 E~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~qr~~-~Ggf~STQ----dTv~aL~ALa~Y~~ 1243 (1451)
T 4acq_A         1184 EMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITKQQNA-QGGFSSTQ----DTVVALHALSKYGA 1243 (1451)
T ss_dssp             THHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTTCCCT-TSCCSSHH----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccccccccchhhHHHHHHHHHHcCCC-CCCcccHH----HHHHHHHHHHHHHH
Confidence            6899999998888632    223467899999998887 79998632    44444444444443

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}

Probab=98.70  E-value=7e-07  Score=94.92  Aligned_cols=231  Identities=13%  Similarity=0.022  Sum_probs=132.8

Q ss_pred             CCCCccCccChHHHHHHHHHHHHHcCCC--CChhhHHHHHHH-------HHhcCCCCCCCCCCCCCCCchHHHHHHHHHH
Q psy15672          2 SRVGNCLDASRAWICYWICHSLSLLDEP--LSSADKSCVVNF-------LSQCQSPNGGFGGGPGQDPHIAATYAAVNCL   72 (271)
Q Consensus         2 p~~~~~~d~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~i~~-------l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L   72 (271)
                      |....-|-.++.+...+++.-|...+..  +....+++++++       ++..|++||||+..++..++.+.|.+++..|
T Consensus      1006 PyGC~EQ~~s~~~P~~~~~~yL~~~~q~~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l 1085 (1661)
T 2b39_A         1006 PSGCGEQNMIGMTPTVIAVHYLDSTDQWEKFGLEKRQESLELIRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVF 1085 (1661)
T ss_dssp             CCCSTTGGGGGTHHHHHHHHHHHHHTCGGGSCSHHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHH
T ss_pred             CCCchhhhhhhcccHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHH
Confidence            4445556667777777777666666541  112334444444       5578999999998877788999999999999


Q ss_pred             HHhCCCCcCCcCChHHHHHHHHh-hcCCCCCeeccc--------CC-----CCChhHHHHHHHHHHHhCcC-------Ch
Q psy15672         73 IILGTPEAYNCINRPKLKQFLQR-LKAPDGGFHVHD--------GG-----EVDIRGVYCALCVALLTQVY-------SE  131 (271)
Q Consensus        73 ~~lg~~~~~~~~~~~~~~~~l~~-~q~~dGgf~~~~--------~~-----e~d~~~ty~a~~~l~ll~~~-------~~  131 (271)
                      ..+...-..+.-..+++++||.+ .|.+||.|....        ++     +++...|..++.+|...+..       ..
T Consensus      1086 ~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~ 1165 (1661)
T 2b39_A         1086 ALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLG 1165 (1661)
T ss_dssp             HHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHH
T ss_pred             HhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCccccccCccccHHHHHHHHHhccccccccCcchh
Confidence            88875311111125678999995 999999996421        11     12555555556666554321       12


Q ss_pred             hhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCC-cCCCCCCCCCc
Q psy15672        132 DLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGG-FQGRTNKLVDG  210 (271)
Q Consensus       132 ~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GG-f~gr~~k~~D~  210 (271)
                      ..++++++||.+....   +       .+.........+|+++|..    .+++++.|.+...  .+. |....+...|+
T Consensus      1166 ~~i~~a~~yL~~~~~~---~-------~~~y~~A~layAL~l~g~~----a~~~l~~L~~~~~--~~~~W~~~~~~~~~v 1229 (1661)
T 2b39_A         1166 RSIAKAGDFLENHYRE---L-------RRPYTVAIAAYALALLGKL----EGDRLTKFLNTAK--EKNRWEEPNQKLYNV 1229 (1661)
T ss_dssp             HHHHHHHHHHHHHTTT---C-------CSHHHHHHHHHHHHHTTCC----CHHHHHHHHHHSB--TTTBCCCSSCHHHHH
T ss_pred             HHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHHcCCc----HHHHHHHHHhhcc--CCCCCCCCCCCcchH
Confidence            3567899999875321   1       1222222333455666654    3566777776543  222 22111111123


Q ss_pred             hhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCC
Q psy15672        211 CYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLD  263 (271)
Q Consensus       211 cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~  263 (271)
                      --+-|++-++...+.              .-....+.+||+. .|+..|||.-
T Consensus      1230 E~tayaLlall~~~~--------------~~~~~~iv~wL~~-qr~~~gg~~S 1267 (1661)
T 2b39_A         1230 EATSYALLALLARKD--------------YDTTPPVVRWLNE-QRYYGGGYGS 1267 (1661)
T ss_dssp             HHHHHHHHHHHHHTC--------------TTTSHHHHHHHHH-CCTBTTBBCS
T ss_pred             HHHHHHHHHHHhcCC--------------hhhHHHHHHHHHh-cccCCCCccc
Confidence            333233333322211              1234778899984 6777899963

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1

Probab=98.63  E-value=7.9e-08  Score=86.98  Aligned_cols=165  Identities=16%  Similarity=0.112  Sum_probs=97.3

Q ss_pred             hHHHHHHHHHhcCCCCCCCCCC-----C----C-----------------------------CCCchHHHHHHHHHHHHh
Q psy15672         34 DKSCVVNFLSQCQSPNGGFGGG-----P----G-----------------------------QDPHIAATYAAVNCLIIL   75 (271)
Q Consensus        34 ~~~~~i~~l~~~q~~dGGF~~~-----~----~-----------------------------~~~~~~~Ty~Av~~L~~l   75 (271)
                      +-+++.+.|+..|.++|||.-.     +    .                             ...|...|..++.+|..+
T Consensus        82 ~A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv  161 (408)
T 1r76_A           82 AARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQV  161 (408)
T ss_dssp             HHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHH
Confidence            3567899999999999999631     0    0                             012345677788877665


Q ss_pred             CCC----C-cCCcCChHHHHHHHHhhcCCCCCeecc-cCC-C-------CChhHHHHHHHHHHHhCcC------------
Q psy15672         76 GTP----E-AYNCINRPKLKQFLQRLKAPDGGFHVH-DGG-E-------VDIRGVYCALCVALLTQVY------------  129 (271)
Q Consensus        76 g~~----~-~~~~~~~~~~~~~l~~~q~~dGgf~~~-~~~-e-------~d~~~ty~a~~~l~ll~~~------------  129 (271)
                      ...    + ..-.-..+++++||.+.|.+||||... +.. .       .| -.|--++..|..++..            
T Consensus       162 ~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnD-Dvt~rvle~L~~~~~~~~~~~~~~~~~~  240 (408)
T 1r76_A          162 VSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYND-DALVHVAELLSDIAAGRDGFGFVPPAIR  240 (408)
T ss_dssp             HHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGG-GHHHHHHHHHHHHHHTCTTCTTSCHHHH
T ss_pred             HhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCc-HHHHHHHHHHHHHHhccCcccccchhhh
Confidence            321    0 000112578999999999999999753 211 1       11 1233344444444331            


Q ss_pred             --ChhhHHHHHHHHHHcccC-CCCCCCC------CC--C-------C--C-chhhhhhhhhHHHhhccCCc---cCHHHH
Q psy15672        130 --SEDLFNNTREWLTACQTY-EGGFSGY------PG--F-------E--A-HGGYTFCGFAALCLLKSEHL---CDIKAL  185 (271)
Q Consensus       130 --~~~~~~~~~~~l~~~q~~-dGGF~~~------p~--~-------e--s-~~~~T~~al~aL~llg~~~~---~~~~~~  185 (271)
                        ....++++++||++.|.. ||.+- +      .+  .       |  + .+..|.++|..|.-+...+.   ..++++
T Consensus       241 ~~~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~A  319 (408)
T 1r76_A          241 TRALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGG  319 (408)
T ss_dssp             HHHHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHH
Confidence              124678999999999998 88654 2      11  1       0  0 12234444444444443221   137899


Q ss_pred             HHHHHhccCCCcCCcC
Q psy15672        186 LRWTTNRQMNFEGGFQ  201 (271)
Q Consensus       186 ~~wl~~~Q~~~~GGf~  201 (271)
                      ++||.++|.+ +|++.
T Consensus       320 v~WL~s~Q~~-dg~w~  334 (408)
T 1r76_A          320 VAWLNTSVIR-DRAWV  334 (408)
T ss_dssp             HHHHHHSCCC-C----
T ss_pred             HHHHHHhhcC-CCcee
Confidence            9999999998 77766

>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*

Probab=98.61  E-value=8.2e-07  Score=80.73  Aligned_cols=141  Identities=11%  Similarity=-0.025  Sum_probs=98.3

Q ss_pred             ChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCC--cCChHH
Q psy15672         11 SRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYN--CINRPK   88 (271)
Q Consensus        11 ~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~--~~~~~~   88 (271)
                      .+....=|+|.+|.+.+.++++.    .++.+...|+ +++|...  ...++.+|..|+++|.-++......  ....++
T Consensus       134 tn~Yq~sL~vLALC~~g~~v~~~----~v~~Ll~~~~-~~~~~~g--~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~  206 (414)
T 2bb6_A          134 TSYYQYSLGILALCVHQKRVHDS----VVGKLLYAVE-HKPHLLQ--DHVSVDTMAMAGMAFSCLELSNLNPKQRNRINL  206 (414)
T ss_dssp             SCHHHHHHHHHHHHHTTCCCCHH----HHHHHHHHHH-SSSCSCC--TTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHH
T ss_pred             cchHHHHHHHHHHHHcCCCccHH----HHHHHHHHhh-ccCcCCC--CcccccHHHHHHHHHHHHhhcCCCcchHHHHHH
Confidence            34456678899999999987543    4444444443 4566522  2357889999999999887531100  011444


Q ss_pred             HH----HHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChh---hHHHHHHHHHHcccCCCCCCCCCCCCCch
Q psy15672         89 LK----QFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSED---LFNNTREWLTACQTYEGGFSGYPGFEAHG  161 (271)
Q Consensus        89 ~~----~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~---~~~~~~~~l~~~q~~dGGF~~~p~~es~~  161 (271)
                      ++    ++|.+.|++||+|+       +..+|-.|+.+|...+.....   +..+++++|++ |..||+|.       ..
T Consensus       207 al~~l~~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~-------np  271 (414)
T 2bb6_A          207 ALKRVQEKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ-------NP  271 (414)
T ss_dssp             HHHHHHHHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC-------SH
T ss_pred             HHHHHHHHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC-------Ch
Confidence            55    78888899999996       456788888888888765433   67789999999 99999997       34


Q ss_pred             hhhhhhhhHHHh
Q psy15672        162 GYTFCGFAALCL  173 (271)
Q Consensus       162 ~~T~~al~aL~l  173 (271)
                      ..|..++-+|.-
T Consensus       272 ~ataQ~lpaL~g  283 (414)
T 2bb6_A          272 LMISQLLPVLNQ  283 (414)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHhcC
Confidence            567777776553

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}

Probab=98.58  E-value=1.7e-07  Score=97.69  Aligned_cols=114  Identities=13%  Similarity=0.090  Sum_probs=82.5

Q ss_pred             hHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhC---c-CChhhHHHHHHHHHHcccCCCCCCCCCC-----
Q psy15672         86 RPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQ---V-YSEDLFNNTREWLTACQTYEGGFSGYPG-----  156 (271)
Q Consensus        86 ~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~---~-~~~~~~~~~~~~l~~~q~~dGGF~~~p~-----  156 (271)
                      .+.+++++.++|++||||+..++.+++...|..++.+|..+.   . .+...++++++||.+.|.+||.|.....     
T Consensus       874 i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~  953 (1325)
T 2pn5_A          874 LRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKE  953 (1325)
T ss_dssp             HHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHH
T ss_pred             HHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChh
Confidence            344566779999999999998888889999988888888763   2 3456789999999999999999965421     


Q ss_pred             ----CCCchhhhhhhhhHHHhhccCC---ccCHHHHHHHHHhccCCCcCC
Q psy15672        157 ----FEAHGGYTFCGFAALCLLKSEH---LCDIKALLRWTTNRQMNFEGG  199 (271)
Q Consensus       157 ----~es~~~~T~~al~aL~llg~~~---~~~~~~~~~wl~~~Q~~~~GG  199 (271)
                          ......+|++++++|.-.|...   ...++++++||.++|...+++
T Consensus       954 ~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~ 1003 (1325)
T 2pn5_A          954 MQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNA 1003 (1325)
T ss_dssp             HHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCH
T ss_pred             hcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCH
Confidence                1123446667777776555331   234678889999887543333

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*

Probab=98.57  E-value=4e-06  Score=82.72  Aligned_cols=105  Identities=12%  Similarity=0.047  Sum_probs=76.1

Q ss_pred             CCCCCccCccChHHHHHHHHHHHHHcCCC--CChhhHHHH-------HHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHH
Q psy15672          1 MSRVGNCLDASRAWICYWICHSLSLLDEP--LSSADKSCV-------VNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNC   71 (271)
Q Consensus         1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~-------i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~   71 (271)
                      +|....-|--+++....|++.-|...+..  +.+..++++       +.-+++.|++||||+..++..++.+.|.+++.+
T Consensus       327 ~P~GC~EQ~ms~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~  406 (767)
T 4fxk_B          327 LPRGCGEQTMIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKV  406 (767)
T ss_dssp             CCCCSTTGGGGGTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHH
T ss_pred             ccccchhhHHHhhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHH
Confidence            45556666677778888888888877652  223333444       444567899999999888888899999999999


Q ss_pred             HHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeec
Q psy15672         72 LIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHV  105 (271)
Q Consensus        72 L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~  105 (271)
                      |......-.........++.||.+.|.+||.|..
T Consensus       407 l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e  440 (767)
T 4fxk_B          407 LSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQD  440 (767)
T ss_dssp             HHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCC
T ss_pred             HHHHHhhcCcchHHHHHHHHHHHHhhhhcccchh
Confidence            9888653111112256688999999999999974

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...

Probab=98.52  E-value=1.2e-06  Score=88.14  Aligned_cols=175  Identities=18%  Similarity=0.138  Sum_probs=115.1

Q ss_pred             ccChHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHh-cCCCCCCCCCCCC--------C-----CCchHHHHHHHHHH
Q psy15672          9 DASRAWICYWICHSLSLLDEP--LSSADKSCVVNFLSQ-CQSPNGGFGGGPG--------Q-----DPHIAATYAAVNCL   72 (271)
Q Consensus         9 d~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~i~~l~~-~q~~dGGF~~~~~--------~-----~~~~~~Ty~Av~~L   72 (271)
                      +++..|++-|++..|..+...  +++...+++++||.+ .|.+||+|.....        .     ++++..|.+++.+|
T Consensus       324 ~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL  403 (915)
T 2hr0_B          324 RAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISL  403 (915)
T ss_dssp             SCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHH
T ss_pred             CCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHHHH
Confidence            467899999999999988743  566678899999995 9999999965321        1     23566677888888


Q ss_pred             HHhCCCC--cCC--cCChHHHHHHHHhhcCC-CCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccC
Q psy15672         73 IILGTPE--AYN--CINRPKLKQFLQRLKAP-DGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTY  147 (271)
Q Consensus        73 ~~lg~~~--~~~--~~~~~~~~~~l~~~q~~-dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~  147 (271)
                      ...|...  ...  ....+++++||.+.+.. ++.|           ..-.+..+|.+.|..    .+.+++.|.++.. 
T Consensus       404 ~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~~~~y-----------~~a~layAL~l~g~~----a~~~l~~L~~~~~-  467 (915)
T 2hr0_B          404 QEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSY-----------TVAIAGYALAQMGRL----KGPLLNKFLTTAK-  467 (915)
T ss_dssp             HHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGCCSHH-----------HHHHHHHHHHTTTCC----CHHHHHHHHHTSB-
T ss_pred             HhcccccccCcccchHHHHHHHHHHHHhhhccCCHH-----------HHHHHHHHHHHcCCh----HHHHHHHHHhhcc-
Confidence            8776420  000  11356799999988654 1111           111222245555543    3455666766543 


Q ss_pred             CCCCCCCCCCC-CchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCC
Q psy15672        148 EGGFSGYPGFE-AHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQG  202 (271)
Q Consensus       148 dGGF~~~p~~e-s~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~g  202 (271)
                      +|.+-..++.. .+...|.|||.+|...+..  ....+.++||.+.|+. +|||..
T Consensus       468 ~~~~w~~~~~~~~~ve~TayaLlall~~~~~--~~~~~~v~wL~~qq~~-~Ggw~S  520 (915)
T 2hr0_B          468 DKNRWEDPGKQLYNVEATSYALLALLQLKDF--DFVPPVVRWLNEQRYY-GGGYGS  520 (915)
T ss_dssp             TTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT--TTHHHHHHHHHTCCCS-SSSCCS
T ss_pred             CCCCCCCCCCCccchHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcccC-CCCccc
Confidence            44422222221 3566789999999888764  3578999999999887 799875

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*

Probab=98.49  E-value=7.3e-08  Score=84.88  Aligned_cols=156  Identities=15%  Similarity=0.129  Sum_probs=96.2

Q ss_pred             HHHHHHHhcCCCCCCCCCCC-------------CCCCchHHHHHHHHHHHHhCCCC--cCCcCChHHHHHHHHhhcCCCC
Q psy15672         37 CVVNFLSQCQSPNGGFGGGP-------------GQDPHIAATYAAVNCLIILGTPE--AYNCINRPKLKQFLQRLKAPDG  101 (271)
Q Consensus        37 ~~i~~l~~~q~~dGGF~~~~-------------~~~~~~~~Ty~Av~~L~~lg~~~--~~~~~~~~~~~~~l~~~q~~dG  101 (271)
                      .+.+-|+..|+++|||.-..             ....|...|..++..|.-+....  ..-.-..+++++||.+.|.++|
T Consensus        35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG  114 (332)
T 1gxm_A           35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG  114 (332)
T ss_dssp             GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence            35778999999999998421             11345667888888886653210  0001125789999999999999


Q ss_pred             Ceecc-cCC-C-------CChhHHHHHHHHHHHhCc----------------CChhhHHHHHHHHHHcccCCCCCCCCCC
Q psy15672        102 GFHVH-DGG-E-------VDIRGVYCALCVALLTQV----------------YSEDLFNNTREWLTACQTYEGGFSGYPG  156 (271)
Q Consensus       102 gf~~~-~~~-e-------~d~~~ty~a~~~l~ll~~----------------~~~~~~~~~~~~l~~~q~~dGGF~~~p~  156 (271)
                      ||... +.. .       .| -.|--++..|..++.                .....++++++||++.|..+||+-.+=+
T Consensus       115 GWpqFdpd~~~Yl~~IpFnD-DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg  193 (332)
T 1gxm_A          115 ALPQFYPLKGGYSDHATFND-NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWC  193 (332)
T ss_dssp             CCBSEESCCSGGGGSEECGG-GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCC
T ss_pred             CccccCCCcccccccCCcch-HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeec
Confidence            99854 221 1       11 134445555555531                1124678999999999999998654432


Q ss_pred             CCCchhhhhh----------hhhHHH-------hhccCCcc----CHHHHHHHHHhccC
Q psy15672        157 FEAHGGYTFC----------GFAALC-------LLKSEHLC----DIKALLRWTTNRQM  194 (271)
Q Consensus       157 ~es~~~~T~~----------al~aL~-------llg~~~~~----~~~~~~~wl~~~Q~  194 (271)
                      . -|...|+.          +|.++.       +++.....    -++++++||.++|.
T Consensus       194 ~-qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~  251 (332)
T 1gxm_A          194 A-QHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRT  251 (332)
T ss_dssp             S-EECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTT
T ss_pred             c-ccccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccc
Confidence            2 12222333          333333       23433311    37899999999997

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}

Probab=98.42  E-value=2.1e-06  Score=89.98  Aligned_cols=107  Identities=15%  Similarity=0.034  Sum_probs=80.8

Q ss_pred             hHHHHHHHHhhcCCCCCeecccC----CCCChhHHHHHHHHHHHhCc---CChhhHHHHHHHHHHcccCCCCCCCCC---
Q psy15672         86 RPKLKQFLQRLKAPDGGFHVHDG----GEVDIRGVYCALCVALLTQV---YSEDLFNNTREWLTACQTYEGGFSGYP---  155 (271)
Q Consensus        86 ~~~~~~~l~~~q~~dGgf~~~~~----~e~d~~~ty~a~~~l~ll~~---~~~~~~~~~~~~l~~~q~~dGGF~~~p---  155 (271)
                      .+++++|+.+.|++||||+....    .+.+...|-.++-.|..+..   .+...++++++||++.|.+||.|....   
T Consensus       985 i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~ 1064 (1451)
T 4acq_A          985 LNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLL 1064 (1451)
T ss_dssp             HHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCS
T ss_pred             HHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCccc
Confidence            35678999999999999997643    45788888888888776642   345678999999999999999997321   


Q ss_pred             -----C-CCCchhhhhhhhhHHHhhccCC-ccCHHHHHHHHHhc
Q psy15672        156 -----G-FEAHGGYTFCGFAALCLLKSEH-LCDIKALLRWTTNR  192 (271)
Q Consensus       156 -----~-~es~~~~T~~al~aL~llg~~~-~~~~~~~~~wl~~~  192 (271)
                           + .+.+...|++++.+|...|... ...++++++||.++
T Consensus      1065 ~~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~ 1108 (1451)
T 4acq_A         1065 NNAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESA 1108 (1451)
T ss_dssp             CGGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHH
T ss_pred             chhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence                 1 1345567999999999998643 22466788888754

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1

Probab=98.40  E-value=2.5e-07  Score=83.76  Aligned_cols=118  Identities=14%  Similarity=0.152  Sum_probs=68.6

Q ss_pred             hHHHHHHHHHhcCCCCCCCCCCCCC----CCch----HHHHHHHHHHHHhCCC-CcCCc----------CChHHHHHHHH
Q psy15672         34 DKSCVVNFLSQCQSPNGGFGGGPGQ----DPHI----AATYAAVNCLIILGTP-EAYNC----------INRPKLKQFLQ   94 (271)
Q Consensus        34 ~~~~~i~~l~~~q~~dGGF~~~~~~----~~~~----~~Ty~Av~~L~~lg~~-~~~~~----------~~~~~~~~~l~   94 (271)
                      ..++.++||+++|.+||||+...-.    .+|+    ..|-..+..|..++.. ..+..          ...+++++||+
T Consensus       176 Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll  255 (408)
T 1r76_A          176 AALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIV  255 (408)
T ss_dssp             HHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhhhhHHHHHHHHHHHHH
Confidence            4678999999999999999864311    1111    2344555555555431 10111          23578999999


Q ss_pred             hhcCC-CCCeecccC-----C----------C-CChhHHHHHHHHHHHhCcCC--h---hhHHHHHHHHHHcccCCCCCC
Q psy15672         95 RLKAP-DGGFHVHDG-----G----------E-VDIRGVYCALCVALLTQVYS--E---DLFNNTREWLTACQTYEGGFS  152 (271)
Q Consensus        95 ~~q~~-dGgf~~~~~-----~----------e-~d~~~ty~a~~~l~ll~~~~--~---~~~~~~~~~l~~~q~~dGGF~  152 (271)
                      +.|.+ ||+|. ..+     +          | .-+...=.+-.++.++....  +   ..++++++||.++|++||+|-
T Consensus       256 ~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av~WL~s~Q~~dg~w~  334 (408)
T 1r76_A          256 ETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVAWLNTSVIRDRAWV  334 (408)
T ss_dssp             HHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHSCCCC----
T ss_pred             HhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhcCCCcee
Confidence            99999 99997 211     0          0 01111112223333444332  2   258899999999999999986

>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A

Probab=98.34  E-value=5.8e-06  Score=88.04  Aligned_cols=176  Identities=10%  Similarity=-0.015  Sum_probs=102.2

Q ss_pred             CccChHHHHHHHHHHHHHcCCC-----CChhhHHHHHHHH-------HhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHh
Q psy15672          8 LDASRAWICYWICHSLSLLDEP-----LSSADKSCVVNFL-------SQCQSPNGGFGGGPGQDPHIAATYAAVNCLIIL   75 (271)
Q Consensus         8 ~d~~~~~~~y~~l~~L~lL~~~-----~~~~~~~~~i~~l-------~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~l   75 (271)
                      |-.++.+...+++.-|...+.-     .....+++++++|       ++.|++||||+...+..++.+.|.+++..|..+
T Consensus      1010 Q~~s~~~P~~~~~~yL~~~~qw~~l~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A 1089 (1676)
T 3cu7_A         1010 AELMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQV 1089 (1676)
T ss_dssp             HHHTTSHHHHHHHHHHHHTTCGGGCSSCHHHHHHHHHHHHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHH
Confidence            4445555555566555555430     1112344555554       468999999998877788999999999998887


Q ss_pred             CCCCcCCcCChHHHHHHHHh-hcCCCCCeecc-c-------CCC------CChhHHHHHHHHHHHhCcC-----ChhhHH
Q psy15672         76 GTPEAYNCINRPKLKQFLQR-LKAPDGGFHVH-D-------GGE------VDIRGVYCALCVALLTQVY-----SEDLFN  135 (271)
Q Consensus        76 g~~~~~~~~~~~~~~~~l~~-~q~~dGgf~~~-~-------~~e------~d~~~ty~a~~~l~ll~~~-----~~~~~~  135 (271)
                      ...-..+.-..+++++||.+ .|.+||.|... +       ++.      +++..|..++.+|...+..     ....+.
T Consensus      1090 ~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~ 1169 (1676)
T 3cu7_A         1090 NKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALI 1169 (1676)
T ss_dssp             HTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHH
T ss_pred             HhcccCCHHHHHHHHHHHHHhhCCCCCcccCCccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHH
Confidence            64211111225678999999 99999999642 1       111      1344444445555443321     123567


Q ss_pred             HHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccC
Q psy15672        136 NTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQM  194 (271)
Q Consensus       136 ~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~  194 (271)
                      ++++||.+....   +       .+.......-.+|+++|... ...+++++.|.+...
T Consensus      1170 ~a~~yL~~~~~~---~-------~~~y~~A~lA~Al~l~g~~~-~~a~~~l~~L~~~a~ 1217 (1676)
T 3cu7_A         1170 KADNFLLENTLP---A-------QSTFTLAISAYALSLGDKTH-PQFRSIVSALKREAL 1217 (1676)
T ss_dssp             HHHHHHHHHHSS---C-------SCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHHHCE
T ss_pred             HHHHHHHHhhhc---c-------CCHHHHHHHHHHHHhcCCch-hhHHHHHHHHHhhhh
Confidence            899999875421   1       12212222333455566543 125677788877654

>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*

Probab=98.30  E-value=5.4e-06  Score=75.35  Aligned_cols=124  Identities=12%  Similarity=-0.032  Sum_probs=84.5

Q ss_pred             CchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCC-----hhhH
Q psy15672         60 PHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYS-----EDLF  134 (271)
Q Consensus        60 ~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~-----~~~~  134 (271)
                      ++....-.++.+|+..|..     + .++.+..|...|. +++|..  ++..|+-.+-.|+.+|..++...     ...+
T Consensus       134 tn~Yq~sL~vLALC~~g~~-----v-~~~~v~~Ll~~~~-~~~~~~--g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i  204 (414)
T 2bb6_A          134 TSYYQYSLGILALCVHQKR-----V-HDSVVGKLLYAVE-HKPHLL--QDHVSVDTMAMAGMAFSCLELSNLNPKQRNRI  204 (414)
T ss_dssp             SCHHHHHHHHHHHHHTTCC-----C-CHHHHHHHHHHHH-SSSCSC--CTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHH
T ss_pred             cchHHHHHHHHHHHHcCCC-----c-cHHHHHHHHHHhh-ccCcCC--CCcccccHHHHHHHHHHHHhhcCCCcchHHHH
Confidence            4555555688888998863     2 4456666666554 344531  23345666667777776664311     2335


Q ss_pred             HHHH----HHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCc---cCHHHHHHHHHhccCCCcCCcC
Q psy15672        135 NNTR----EWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHL---CDIKALLRWTTNRQMNFEGGFQ  201 (271)
Q Consensus       135 ~~~~----~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~---~~~~~~~~wl~~~Q~~~~GGf~  201 (271)
                      ++++    ++|++.|++||+||       +...|..|+.+|...+....   .+..++++||+. |.+ +|+|+
T Consensus       205 ~~al~~l~~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~-dG~F~  269 (414)
T 2bb6_A          205 NLALKRVQEKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQ-HKTFQ  269 (414)
T ss_dssp             HHHHHHHHHHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHT-TTCCC
T ss_pred             HHHHHHHHHHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hcc-CCCCC
Confidence            5555    88889999999997       24458899999999987542   366789999998 877 89997

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*

Probab=98.22  E-value=1.6e-07  Score=99.08  Aligned_cols=162  Identities=13%  Similarity=0.075  Sum_probs=0.0

Q ss_pred             HHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCc-CCcCChHHHHHHHHh-hcCCCCCeecc--------cCC
Q psy15672         40 NFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEA-YNCINRPKLKQFLQR-LKAPDGGFHVH--------DGG  109 (271)
Q Consensus        40 ~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~-~~~~~~~~~~~~l~~-~q~~dGgf~~~--------~~~  109 (271)
                      .-+++.|++||||+...+.+++.+.|.+++.+|......-. .+.-...++++||.+ .|++||+|...        .++
T Consensus      1037 qr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~Gg 1116 (1642)
T 3prx_B         1037 AQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQGG 1116 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccccccchhccCC
Confidence            33456899999999876667888899999888776654211 222336789999997 89999999742        122


Q ss_pred             ----CCChhHHHHHHHHHHHhCcC-------ChhhHHHHHHHHHHcccC-------------------------------
Q psy15672        110 ----EVDIRGVYCALCVALLTQVY-------SEDLFNNTREWLTACQTY-------------------------------  147 (271)
Q Consensus       110 ----e~d~~~ty~a~~~l~ll~~~-------~~~~~~~~~~~l~~~q~~-------------------------------  147 (271)
                          +.++..|-.++.+|.-.+..       ....+++++.||.+....                               
T Consensus      1117 ~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~~~~~~~~Y~~Ai~aYAl~l~~~~~~~~l~~l~~~ 1196 (1642)
T 3prx_B         1117 IQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKKYEKLQRPYTTALTAYALAAADQLNDDRVLMAAST 1196 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHhc
Confidence                23343333333333222211       122456666777643210                               


Q ss_pred             CCCCCCCCCC-CCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCC
Q psy15672        148 EGGFSGYPGF-EAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRT  204 (271)
Q Consensus       148 dGGF~~~p~~-es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~  204 (271)
                      ++-+-.+|+. ..++..|.+||.++..++..  ......++||.+.|+. .|||..--
T Consensus      1197 ~~~~W~~~~~~~~~VE~TaYaLLa~l~~~~~--~~a~~iv~WL~~qr~~-~Ggf~STQ 1251 (1642)
T 3prx_B         1197 GRDHWEEYNAHTHNIEGTSYALLALLKMKKF--DQTGPIVRWLTDQNFY-GETYGQTQ 1251 (1642)
T ss_dssp             ----------------------------------------------------------
T ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHhccCch--hhHHHHHHHHHHhccC-CCcccCcH
Confidence            1111112222 13567788888888776643  3577899999998887 79998744

>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*

Probab=97.82  E-value=0.00013  Score=66.03  Aligned_cols=133  Identities=10%  Similarity=-0.055  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCC---CCcCCcC------
Q psy15672         14 WICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGT---PEAYNCI------   84 (271)
Q Consensus        14 ~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~---~~~~~~~------   84 (271)
                      ...=.++.+|.+.+.++    .+..++-|...|+.||+       .-++.++..|+++|.-+..   .. ....      
T Consensus       115 Yq~sL~vLALC~~~~~v----~~~~v~kLl~~~~~~g~-------~~sVDT~AMa~LAL~C~~~~~~~~-~~~~~~~~i~  182 (399)
T 2pmv_A          115 YGPSLAILALCQKNSEA----TLPIAVRFAKTLLANSS-------PFNVDTGAMATLALTCMYNKIPVG-SEEGYRSLFG  182 (399)
T ss_dssp             HHHHHHHHHHHHHCHHH----HHHHHHHHHHHHHHCCS-------CCCHHHHHHHHHHHHHHHTBCCTT-CCSSHHHHHH
T ss_pred             hhHHHHHHHHHhcCCCC----CHHHHHHHHHHHHccCC-------cccchHHHHHHHHHHHHhhccccc-cchhhHHHHH
Confidence            33334556666666644    44555555555555531       2367788889999888775   11 1111      


Q ss_pred             -ChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcC-Chh-hHHHHHHHHHHcccCCCCCCCCCCCCCch
Q psy15672         85 -NRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVY-SED-LFNNTREWLTACQTYEGGFSGYPGFEAHG  161 (271)
Q Consensus        85 -~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~-~~~-~~~~~~~~l~~~q~~dGGF~~~p~~es~~  161 (271)
                       -.++++++|.+.|++||+|+       ++.+|--|+.+|...+.. ... +..++++||++ |..||+|+       +.
T Consensus       183 ~ai~~~~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~-------np  247 (399)
T 2pmv_A          183 QVLKDIVEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH-------NP  247 (399)
T ss_dssp             HHHHHHHHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC-------SH
T ss_pred             HHHHHHHHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC-------CH
Confidence             24668888999999999996       577888889898888753 223 68899999999 89999996       34


Q ss_pred             hhhhhhhhHHHh
Q psy15672        162 GYTFCGFAALCL  173 (271)
Q Consensus       162 ~~T~~al~aL~l  173 (271)
                      ..|..++=+|.-
T Consensus       248 ~~taQilPaL~~  259 (399)
T 2pmv_A          248 MSIAQILPSLKG  259 (399)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcC
Confidence            566666666544

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*

Probab=97.81  E-value=0.0014  Score=64.46  Aligned_cols=182  Identities=19%  Similarity=0.144  Sum_probs=105.6

Q ss_pred             ccChHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCCCCCCCCCC--------CC----CCchHHHHHHHHHHHH
Q psy15672          9 DASRAWICYWICHSLSLLDEP--LSSADKSCVVNFLSQCQSPNGGFGGGP--------GQ----DPHIAATYAAVNCLII   74 (271)
Q Consensus         9 d~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~i~~l~~~q~~dGGF~~~~--------~~----~~~~~~Ty~Av~~L~~   74 (271)
                      ..+..|++-|++.+|.....-  +++....+.++||.+.|.+||.|...-        +.    ..++..|.+.+.+|..
T Consensus       393 ~~~s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~~~~~~~ltAyvliaL~e  472 (767)
T 4fxk_B          393 RDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHH  472 (767)
T ss_dssp             SCBCHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhcccchhcchhcchhhcCCcCCCccchhHHHHHHHHHHh
Confidence            346799999999999999764  466678889999999999999996421        11    2345667777777765


Q ss_pred             hCCCCcCCc---------CChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcc
Q psy15672         75 LGTPEAYNC---------INRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQ  145 (271)
Q Consensus        75 lg~~~~~~~---------~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q  145 (271)
                      .+.......         ..+.++++||.....++  +       .+....-.+..+|.+.+... ...+.+.+-|.+.-
T Consensus       473 ~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~~--~-------~~~y~~Al~ayaL~l~~~~~-~~~~~~~~~L~~~a  542 (767)
T 4fxk_B          473 GLAVFQDEGAEPLKQRVEASISKANSFLGEKASAG--L-------LGAHAAAITAYALSLTKAPV-DLLGVAHNNLMAMA  542 (767)
T ss_dssp             HHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTSC--C-------CCHHHHHHHHHHHHHHTCTT-HHHHHHHHHHHTTC
T ss_pred             cCCccccchhhhhHhHHHHHHHHHHHHHHHHhhcc--c-------CCHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHhhc
Confidence            443210000         12456788887665432  1       11111111222344555432 33444555555544


Q ss_pred             cCCCCCCCC--CC-C---------------------C-CchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCc
Q psy15672        146 TYEGGFSGY--PG-F---------------------E-AHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGF  200 (271)
Q Consensus       146 ~~dGGF~~~--p~-~---------------------e-s~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf  200 (271)
                      ..+|+....  +. .                     . .++..|.+||.++...... .....++++||.+.|+. .|||
T Consensus       543 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEttayaLla~l~~~~~-~~~a~~iv~WL~~Qr~~-~Ggf  620 (767)
T 4fxk_B          543 QETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEGK-AEMADQASAWLTRQGSF-QGGF  620 (767)
T ss_dssp             CBCSSCBCCCCCCCCCGGGGCCSSSCCCSSSCBCCCCHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHTCCT-TSSC
T ss_pred             EEcCCeeEEeccCCCcccccccccccccccccccccchHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHhhcC-CCCC
Confidence            434432211  10 0                     0 1245567777766554432 23467899999998776 7999


Q ss_pred             CC
Q psy15672        201 QG  202 (271)
Q Consensus       201 ~g  202 (271)
                      ..
T Consensus       621 ~S  622 (767)
T 4fxk_B          621 RS  622 (767)
T ss_dssp             SS
T ss_pred             cC
Confidence            76

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}

Probab=97.81  E-value=0.00055  Score=72.91  Aligned_cols=176  Identities=18%  Similarity=0.176  Sum_probs=111.0

Q ss_pred             ccChHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHh-cCCCCCCCCCC-C-------C-----CCCchHHHHHHHHHH
Q psy15672          9 DASRAWICYWICHSLSLLDEP--LSSADKSCVVNFLSQ-CQSPNGGFGGG-P-------G-----QDPHIAATYAAVNCL   72 (271)
Q Consensus         9 d~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~i~~l~~-~q~~dGGF~~~-~-------~-----~~~~~~~Ty~Av~~L   72 (271)
                      ..+..|++-|++..|..+...  +++...+++++||.+ .|+++|.|... +       +     .++++..|.+++.+|
T Consensus      1071 ~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL 1150 (1661)
T 2b39_A         1071 RPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFVLIAL 1150 (1661)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCCTTSSHHHHHHHHHHH
T ss_pred             CCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCccccccCccccHHHHHHHH
Confidence            467899999999999988763  567778999999995 99999999632 1       1     123677777888888


Q ss_pred             HHhCCCC--cCCc--CChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCC
Q psy15672         73 IILGTPE--AYNC--INRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYE  148 (271)
Q Consensus        73 ~~lg~~~--~~~~--~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~d  148 (271)
                      ...|...  .+..  ...+++++||.+....   +       .++.....+..+|.+.|..    .+++++.|.+... +
T Consensus      1151 ~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~y~~A~layAL~l~g~~----a~~~l~~L~~~~~-~ 1215 (1661)
T 2b39_A         1151 HEAKDICEAQVNSLGRSIAKAGDFLENHYRE---L-------RRPYTVAIAAYALALLGKL----EGDRLTKFLNTAK-E 1215 (1661)
T ss_dssp             HHTTTTTTTTCSSHHHHHHHHHHHHHHHTTT---C-------CSHHHHHHHHHHHHHTTCC----CHHHHHHHHHHSB-T
T ss_pred             HhccccccccCcchhHHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHHcCCc----HHHHHHHHHhhcc-C
Confidence            7665310  0001  1245788999775332   1       1111111222345555654    3455666666543 3


Q ss_pred             CCCCCCCCC-CCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCC
Q psy15672        149 GGFSGYPGF-EAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQG  202 (271)
Q Consensus       149 GGF~~~p~~-es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~g  202 (271)
                      |.+-..++. ..+...|.+|+.+|...+...  ...+.++||.+.|+. .|||..
T Consensus      1216 ~~~W~~~~~~~~~vE~tayaLlall~~~~~~--~~~~iv~wL~~qr~~-~gg~~S 1267 (1661)
T 2b39_A         1216 KNRWEEPNQKLYNVEATSYALLALLARKDYD--TTPPVVRWLNEQRYY-GGGYGS 1267 (1661)
T ss_dssp             TTBCCCSSCHHHHHHHHHHHHHHHHHHTCTT--TSHHHHHHHHHCCTB-TTBBCS
T ss_pred             CCCCCCCCCCcchHHHHHHHHHHHHhcCChh--hHHHHHHHHHhcccC-CCCccc
Confidence            332222222 124567888888888877543  467889999998775 689876

>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A

Probab=97.76  E-value=0.00075  Score=71.95  Aligned_cols=183  Identities=15%  Similarity=0.105  Sum_probs=109.3

Q ss_pred             cCccChHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHh-cCCCCCCCCCCC--------CC------CCchHHHHHHH
Q psy15672          7 CLDASRAWICYWICHSLSLLDE--PLSSADKSCVVNFLSQ-CQSPNGGFGGGP--------GQ------DPHIAATYAAV   69 (271)
Q Consensus         7 ~~d~~~~~~~y~~l~~L~lL~~--~~~~~~~~~~i~~l~~-~q~~dGGF~~~~--------~~------~~~~~~Ty~Av   69 (271)
                      ....+..|++-|++..|..+..  .+++...+++++||.+ .|++||.|....        +.      ++++..|.+++
T Consensus      1070 ~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~~ltAyvl 1149 (1676)
T 3cu7_A         1070 KGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTV 1149 (1676)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCCccccchhhcCCcccccccCccccHHHHH
Confidence            4557789999999999998865  3577778899999999 999999996421        10      02455666667


Q ss_pred             HHHHHhCCCCcC--CcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccC
Q psy15672         70 NCLIILGTPEAY--NCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTY  147 (271)
Q Consensus        70 ~~L~~lg~~~~~--~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~  147 (271)
                      .+|...|....+  ......++++||.+....   +       .++.....+..+|.+.|... ...+++++.|++....
T Consensus      1150 ~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~y~~A~lA~Al~l~g~~~-~~a~~~l~~L~~~a~~ 1218 (1676)
T 3cu7_A         1150 IGIRKAFDICPLVKIDTALIKADNFLLENTLP---A-------QSTFTLAISAYALSLGDKTH-PQFRSIVSALKREALV 1218 (1676)
T ss_dssp             HHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS---C-------SCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHHHCEE
T ss_pred             HHHHhcccccCCcccHHHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHhcCCch-hhHHHHHHHHHhhhhh
Confidence            666554321000  011345788999775332   1       11111111222344445432 1256677777776654


Q ss_pred             CCC-----CCCCCC------C---C--CchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCC
Q psy15672        148 EGG-----FSGYPG------F---E--AHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGR  203 (271)
Q Consensus       148 dGG-----F~~~p~------~---e--s~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr  203 (271)
                      +|+     +-..+.      .   .  .+...|.+|+.+|...+.  .....+.++||.+.|+. .|||..-
T Consensus      1219 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ve~tayaLlall~~~~--~~~~~~iv~wL~~qr~~-~Gg~~ST 1287 (1676)
T 3cu7_A         1219 KGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLKD--INYVNPVIKWLSEEQRY-GGGFYST 1287 (1676)
T ss_dssp             ETTTTSEEECCSCSSCCSSCCCSCCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSCS-SSCCSTT
T ss_pred             ccCCccccCCCCCCCCccccccCCCccchHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhccCC-CCCcccc
Confidence            443     211110      0   1  144567788877777653  33467889999997765 6898864

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*

Probab=97.75  E-value=1.5e-05  Score=70.15  Aligned_cols=117  Identities=10%  Similarity=0.103  Sum_probs=78.8

Q ss_pred             HHHHHHHhhcCCCCCeeccc-------------CCCCChhHHHHHHHHHHHhCcC--C---hhhHHHHHHHHHHcccCCC
Q psy15672         88 KLKQFLQRLKAPDGGFHVHD-------------GGEVDIRGVYCALCVALLTQVY--S---EDLFNNTREWLTACQTYEG  149 (271)
Q Consensus        88 ~~~~~l~~~q~~dGgf~~~~-------------~~e~d~~~ty~a~~~l~ll~~~--~---~~~~~~~~~~l~~~q~~dG  149 (271)
                      .+.+-|...|+++|||....             ....|...|..++..|..+...  .   ...++++++||++.|..+|
T Consensus        35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG  114 (332)
T 1gxm_A           35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG  114 (332)
T ss_dssp             GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence            35788889999999997421             1124566677777766654221  1   3567899999999999999


Q ss_pred             CCCCC-CCC-CCch------hhhhhhhhHHHhhccC----------------CccCHHHHHHHHHhccCCCcCCcCCCCC
Q psy15672        150 GFSGY-PGF-EAHG------GYTFCGFAALCLLKSE----------------HLCDIKALLRWTTNRQMNFEGGFQGRTN  205 (271)
Q Consensus       150 GF~~~-p~~-es~~------~~T~~al~aL~llg~~----------------~~~~~~~~~~wl~~~Q~~~~GGf~gr~~  205 (271)
                      ||+.. |.. .-+.      ..|.-+|-.|..++..                ....+++.++||+..|.+ +||+-+|=+
T Consensus       115 GWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~-dggw~g~Wg  193 (332)
T 1gxm_A          115 ALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWK-QNGVLTVWC  193 (332)
T ss_dssp             CCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCE-ETTEECCCC
T ss_pred             CccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCc-cCCCcCeec
Confidence            99864 221 1111      2355577777776531                012367899999999998 898887744

>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*

Probab=97.49  E-value=0.00028  Score=63.77  Aligned_cols=113  Identities=11%  Similarity=0.005  Sum_probs=79.1

Q ss_pred             HHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCc---CC---------hhhH
Q psy15672         67 AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQV---YS---------EDLF  134 (271)
Q Consensus        67 ~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~---~~---------~~~~  134 (271)
                      .++.+|++.|..      ..+..+.-|...++.||+.       .++..+-.|+.+|.-+..   ..         ...+
T Consensus       119 L~vLALC~~~~~------v~~~~v~kLl~~~~~~g~~-------~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai  185 (399)
T 2pmv_A          119 LAILALCQKNSE------ATLPIAVRFAKTLLANSSP-------FNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVL  185 (399)
T ss_dssp             HHHHHHHHHCHH------HHHHHHHHHHHHHHHCCSC-------CCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHH
T ss_pred             HHHHHHHhcCCC------CCHHHHHHHHHHHHccCCc-------ccchHHHHHHHHHHHHhhccccccchhhHHHHHHHH
Confidence            466777777752      2556667777777777432       134444455555554433   11         2346


Q ss_pred             HHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCC--ccCHHHHHHHHHhccCCCcCCcC
Q psy15672        135 NNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEH--LCDIKALLRWTTNRQMNFEGGFQ  201 (271)
Q Consensus       135 ~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~--~~~~~~~~~wl~~~Q~~~~GGf~  201 (271)
                      ++++++|++.|++||.||       +...|--|+.+|...+..+  ..+..++++||+. |.+ +|+|+
T Consensus       186 ~~~~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~-~G~F~  245 (399)
T 2pmv_A          186 KDIVEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIK-QGKFH  245 (399)
T ss_dssp             HHHHHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHT-TTTTC
T ss_pred             HHHHHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-Hhh-CCCcC
Confidence            788999999999999997       4667889999999998742  3478999999998 766 89997

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*

Probab=97.40  E-value=2.3e-05  Score=82.85  Aligned_cols=105  Identities=16%  Similarity=0.085  Sum_probs=0.0

Q ss_pred             HHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhC---c-CChhhHHHHHHHHHH-cccCCCCCCCCC-------
Q psy15672         88 KLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQ---V-YSEDLFNNTREWLTA-CQTYEGGFSGYP-------  155 (271)
Q Consensus        88 ~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~---~-~~~~~~~~~~~~l~~-~q~~dGGF~~~p-------  155 (271)
                      ..+.-+.+.|++||||+...+.+++++.|-.++-.+....   . .+...+.++++||.+ +|.+||.|....       
T Consensus      1034 ~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m 1113 (1642)
T 3prx_B         1034 TGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTM 1113 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccccccchhc
Confidence            4455566688999999987666677777777777766653   2 445678899999998 899999995431       


Q ss_pred             -----CCCCchhhhhhhhhHHHhhccCC-------ccCHHHHHHHHHhc
Q psy15672        156 -----GFEAHGGYTFCGFAALCLLKSEH-------LCDIKALLRWTTNR  192 (271)
Q Consensus       156 -----~~es~~~~T~~al~aL~llg~~~-------~~~~~~~~~wl~~~  192 (271)
                           +.+.+...|.+++.||.-.+...       ...+++++.||.++
T Consensus      1114 ~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B         1114 QGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp             -------------------------------------------------
T ss_pred             cCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHh
Confidence                 22446667888888887765421       12356778888754

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*

Probab=96.84  E-value=0.0037  Score=61.35  Aligned_cols=167  Identities=15%  Similarity=0.127  Sum_probs=95.8

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCC--CchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccCCCCC
Q psy15672         35 KSCVVNFLSQCQSPNGGFGGGPGQD--PHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVD  112 (271)
Q Consensus        35 ~~~~i~~l~~~q~~dGGF~~~~~~~--~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d  112 (271)
                      -..+++||+..|.+||+|+......  .-+.+|.+||.+|..-+..    .-.+++++.||.+.-.-   +.........
T Consensus        55 Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~----~~~i~~Gl~fl~~nl~~---~~~~~~~~vg  127 (764)
T 3p5p_A           55 FPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKTG----HSQVQQGAEFIAENLRL---LNEEDELSPD  127 (764)
T ss_dssp             CHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHTT---CCTTSCCCTT
T ss_pred             ChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHh---hcCCCCCCce
Confidence            5689999999999999998643211  2478999999999886542    22478899999876421   1100000011


Q ss_pred             hhHHHHHHHHH-HHhCcC---Ch--------------------------------hhHHHHHHH--HHHcccCCCCCCCC
Q psy15672        113 IRGVYCALCVA-LLTQVY---SE--------------------------------DLFNNTREW--LTACQTYEGGFSGY  154 (271)
Q Consensus       113 ~~~ty~a~~~l-~ll~~~---~~--------------------------------~~~~~~~~~--l~~~q~~dGGF~~~  154 (271)
                      ...++-++.-+ .-+|..   +.                                +.+...++|  |++.|..||+|...
T Consensus       128 feiifP~ll~~a~~~gl~~p~~~~~~~~l~~~r~~kL~~~~~~~~~~p~~llhslE~~~~~~d~~~~~~~~~~~GS~~~S  207 (764)
T 3p5p_A          128 FQIIFPALLQKAKALGINLPYDLPFIKYLSTTREARLTDVSAAADNIPANMLNALEGLEEVIDWNKIMRFQSKDGSFLSS  207 (764)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCTTSHHHHHHHHHHHHHHHHHHTSTTSSCGGGGGGGGGSGGGCCTTGGGGGBCTTSCBTTB
T ss_pred             eeeeHHHHHHHHHHcCCCCCCCchhHHHHHHhHHHHHhcCchhhcCCCchHHHHHHhccccccHHHHHhccCCCCCcccC
Confidence            11222221111 111210   00                                111122444  55666667777655


Q ss_pred             CCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCC-CCCchhhhhhhhhHHHHHHH
Q psy15672        155 PGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNK-LVDGCYSFWQGGLFPLIYRS  226 (271)
Q Consensus       155 p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k-~~D~cyt~w~~~~L~~l~~~  226 (271)
                      |.      .|.+++..   .+     | +++.+||..-+..+.||   -|+. +.|....-|.+-+|.-||-.
T Consensus       208 Ps------aTAa~l~~---~~-----d-~~~~~YL~~~~~~~~g~---VP~~yP~d~~e~l~lID~LqrLGi~  262 (764)
T 3p5p_A          208 PA------STACVLMN---TG-----D-EKCFTFLNNLLDKFGGC---VPCMYSIDLLERLSLVDNIEHLGIG  262 (764)
T ss_dssp             HH------HHHHHHHH---HC-----C-HHHHHHHHHHHHHHTSC---CCSSCCCHHHHHHHHHHHHHHHTCG
T ss_pred             hH------HHHHHHHh---CC-----C-hhHHHHHHHHHHhcCCC---CCCcCCCcHHHHHHHHHHHHHcCCc
Confidence            42      46666542   11     2 58899998765543444   5664 45777778999999988854

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=96.68  E-value=0.0051  Score=60.78  Aligned_cols=169  Identities=15%  Similarity=0.121  Sum_probs=95.9

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCC--CCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCC-eecccCCCC
Q psy15672         35 KSCVVNFLSQCQSPNGGFGGGPGQ--DPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGG-FHVHDGGEV  111 (271)
Q Consensus        35 ~~~~i~~l~~~q~~dGGF~~~~~~--~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGg-f~~~~~~e~  111 (271)
                      -..+++||+..|.+||+|+.....  ..-+.+|.+||.+|..-+..    .-.+++++.||.+.-..-.. .. ......
T Consensus       103 Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~----~~~i~~Gl~fl~~nl~~~~~~~~-~~~~~v  177 (817)
T 3sdr_A          103 FPQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNVG----DLQVEQGIEFIKSNLELVKDETD-QDSLVT  177 (817)
T ss_dssp             SHHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHTTCCSGGG-SCSCCT
T ss_pred             chHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHHhhcccc-cCCCCc
Confidence            368999999999999999864321  12478999999999886642    22477899999886432100 00 000000


Q ss_pred             ChhHHHHHHHHH-HHhCcC---Ch---------------------------------hhHHHHHHH--HHHcccCCCCCC
Q psy15672        112 DIRGVYCALCVA-LLTQVY---SE---------------------------------DLFNNTREW--LTACQTYEGGFS  152 (271)
Q Consensus       112 d~~~ty~a~~~l-~ll~~~---~~---------------------------------~~~~~~~~~--l~~~q~~dGGF~  152 (271)
                      ....++-++.-+ .-+|..   +.                                 +.+...++|  |++.|..||+|.
T Consensus       178 gfeiifP~ll~~a~~~gl~~p~~~~~~~~l~~~r~~kL~~~~~~~~~~~p~~llhslE~l~~~~d~~~~~~~q~~~GS~~  257 (817)
T 3sdr_A          178 DFEIIFPSLLREAQSLRLGLPYDLPYIHLLQTKRQERLAKLSREEIYAVPSPLLYSLEGIQDIVEWERIMEVQSQDGSFL  257 (817)
T ss_dssp             THHHHHHHHHHHHHHTTCSCCTTCHHHHHHHHHHHHHHHTCCSGGGGTSCCGGGGGGGGCTTTCCTTTGGGGCCTTSCBT
T ss_pred             ceeeeHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHhCCChhhccCCCchHHHHHHhccccccHHHHHhccCCCCCcc
Confidence            111122111111 111110   00                                 111122445  666676677776


Q ss_pred             CCCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCC-CCCchhhhhhhhhHHHHHHH
Q psy15672        153 GYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNK-LVDGCYSFWQGGLFPLIYRS  226 (271)
Q Consensus       153 ~~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k-~~D~cyt~w~~~~L~~l~~~  226 (271)
                      ..|.      .|.+++..   .+     | +++.+||..-+..+.||   -|+. +.|....-|.+-+|.-||-.
T Consensus       258 ~SPs------aTAa~l~~---~~-----d-~~~~~YL~~~~~~~~g~---VP~~yP~d~~e~l~lID~LqrLGi~  314 (817)
T 3sdr_A          258 SSPA------STACVFMH---TG-----D-AKCLEFLNSVMIKFGNF---VPCLYPVDLLERLLIVDNIVRLGIY  314 (817)
T ss_dssp             TBHH------HHHHHHHH---HC-----C-HHHHHHHHHHHHHHSSC---CCSSSCCHHHHHHHHHHHHHHTTCG
T ss_pred             cCHH------HHHHHHHh---CC-----C-hhHHHHHHHHHHhcCCC---CCccCCCcHHHHHHHHHHHHHcCCc
Confidence            5543      45555432   12     2 68899998765543444   5664 45777778999999888754

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=93.85  E-value=0.27  Score=48.59  Aligned_cols=103  Identities=12%  Similarity=0.081  Sum_probs=61.4

Q ss_pred             HHHHHHHHHhcCC---CCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccCC-C
Q psy15672         35 KSCVVNFLSQCQS---PNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGG-E  110 (271)
Q Consensus        35 ~~~~i~~l~~~q~---~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~-e  110 (271)
                      .++.++-|+...+   .||..+.   -.+.++.|.+ |+   +.-..+....+--..+++||.+.|.+||+|+..... .
T Consensus        56 ~~~Lie~VK~~l~~~~~~g~~g~---~S~S~YDTAW-VA---mvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~  128 (817)
T 3sdr_A           56 AEVLVSEIKAMLNPAITGDGESM---ITPSAYDTAW-VA---RVPAIDGSARPQFPQTVDWILKNQLKDGSWGIQSHFLL  128 (817)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCCCC---CCCCHHHHHH-HH---TCBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCTTCCCH
T ss_pred             HHHHHHHHHHHhccccCCCCCcc---cccCHHHhhH-Hh---eeecCCCCCCCCchHHHHHHHHccCCCCCCCCCCCcch
Confidence            3456667776654   5552221   2356788888 32   332211113344578999999999999999743211 0


Q ss_pred             C-ChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcc
Q psy15672        111 V-DIRGVYCALCVALLTQVYSEDLFNNTREWLTACQ  145 (271)
Q Consensus       111 ~-d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q  145 (271)
                      . -+-.|..++.+|.--+. .+..++++++||.+.-
T Consensus       129 ~d~ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~nl  163 (817)
T 3sdr_A          129 SDRLLATLSCVLVLLKWNV-GDLQVEQGIEFIKSNL  163 (817)
T ss_dssp             HHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence            1 24455555555554443 3467889999999753

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}

Probab=93.31  E-value=0.23  Score=48.80  Aligned_cols=101  Identities=12%  Similarity=0.113  Sum_probs=59.1

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccC-CCCC-
Q psy15672         35 KSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDG-GEVD-  112 (271)
Q Consensus        35 ~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~-~e~d-  112 (271)
                      .+..++-|++.-+.- |++.   ..+.++.|.+..    ++...+....+--..+++||.+.|.+||+|+.... ...| 
T Consensus        33 ~~~~~~~i~~~~~~~-~~g~---~S~S~YDTAWVa----mvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~  104 (785)
T 3s9v_A           33 IETLISEIKNMFRCM-GYGE---TNPSAYDTAWVA----RIPAVDGSDNPHFPETVEWILQNQLKDGSWGEGFYFLAYDR  104 (785)
T ss_dssp             HHHHHHHHHHHHHHC-SSCC---CCCCHHHHHHHT----TSBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCSSSCCHHHH
T ss_pred             HHHHHHHHHHHhhcC-CCCc---ccCcHHHhhHHh----ccccCCCCCCCCchHHHHHHHHccCCCCCCCCCCCCchHHH
Confidence            445666666554321 2221   235677888832    33221112234457899999999999999975322 2223 


Q ss_pred             hhHHHHHHHHHHHhCcCChhhHHHHHHHHHHc
Q psy15672        113 IRGVYCALCVALLTQVYSEDLFNNTREWLTAC  144 (271)
Q Consensus       113 ~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~  144 (271)
                      +-.|..++.+|.--+. .+..++++++||.+.
T Consensus       105 l~~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~n  135 (785)
T 3s9v_A          105 ILATLACIITLTLWRT-GETQVQKGIEFFRTQ  135 (785)
T ss_dssp             HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccc-CHHHHHHHHHHHHHH
Confidence            5566666666655443 245677788888753

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*

Probab=92.61  E-value=0.13  Score=50.16  Aligned_cols=59  Identities=17%  Similarity=0.105  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCC--CchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhc
Q psy15672         35 KSCVVNFLSQCQSPNGGFGGGPGQD--PHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLK   97 (271)
Q Consensus        35 ~~~~i~~l~~~q~~dGGF~~~~~~~--~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q   97 (271)
                      -..+++||+..|.+||+|+......  .-+.+|.+||.+|..-+..    .-.+++++.||.+.-
T Consensus        52 Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~----~~~i~rGl~fl~~nl  112 (727)
T 3pya_A           52 FPSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNLF----PHQCNKGITFFRENI  112 (727)
T ss_dssp             CHHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHG
T ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHH
Confidence            3689999999999999999632222  2478999999999885532    224778999998753

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}

Probab=92.48  E-value=0.13  Score=50.51  Aligned_cols=58  Identities=24%  Similarity=0.208  Sum_probs=44.0

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCC-c-hHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhc
Q psy15672         36 SCVVNFLSQCQSPNGGFGGGPGQDP-H-IAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLK   97 (271)
Q Consensus        36 ~~~i~~l~~~q~~dGGF~~~~~~~~-~-~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q   97 (271)
                      ..+++||+..|.+||+|+....... + +.+|.+||.+|..-+..    ...+++++.||.+.-
T Consensus        77 p~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~~----~~~i~~Gl~fl~~nl  136 (785)
T 3s9v_A           77 PETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTG----ETQVQKGIEFFRTQA  136 (785)
T ss_dssp             HHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccC----HHHHHHHHHHHHHHH
Confidence            6899999999999999986422111 3 88999999999886542    224778999998654

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*

Probab=91.67  E-value=0.46  Score=46.59  Aligned_cols=103  Identities=12%  Similarity=0.065  Sum_probs=59.7

Q ss_pred             hHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCC--CcCCcCChHHHHHHHHhhcCCCCCeecccCC-C
Q psy15672         34 DKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTP--EAYNCINRPKLKQFLQRLKAPDGGFHVHDGG-E  110 (271)
Q Consensus        34 ~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~--~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~-e  110 (271)
                      ..+..++-|++..+.- |++.   -.+.++.|.+ |+   +....  +....+--..+++||.+.|.+||+|+..... .
T Consensus         9 ~~~~~~~~i~~~~~~~-~~g~---~S~S~YDTAW-Va---mvp~~~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~   80 (764)
T 3p5p_A            9 RADELVVKIKDMFNAL-GDGD---ISPSAYDTAW-VA---RLATISSDGSEKPRFPQALNWVFNNQLQDGSWGIESHFSL   80 (764)
T ss_dssp             HHHHHHHHHHHHHHTC-SSCC---CCCCHHHHHH-HH---HCEEECTTSCEEESCHHHHHHHHHCCCTTSCCSCTTSCCH
T ss_pred             HHHHHHHHHHHHHhcC-CCCc---ccCcHHHHHH-HH---hCccccCCCCCCCCChHHHHHHHHccCCCCCCCCCCCcch
Confidence            3456677777654332 2222   2356778888 32   33211  1112234678999999999999999743210 1


Q ss_pred             C-ChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcc
Q psy15672        111 V-DIRGVYCALCVALLTQVYSEDLFNNTREWLTACQ  145 (271)
Q Consensus       111 ~-d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q  145 (271)
                      . -+-.|..++.+|.--+. .+..++++++||.+.-
T Consensus        81 ~d~ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~nl  115 (764)
T 3p5p_A           81 CDRLLNTTNSVIALSVWKT-GHSQVQQGAEFIAENL  115 (764)
T ss_dssp             HHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence            1 23455555555554343 3467889999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	271
d2h6fb1	401	a.102.4.3 (B:521-921) Protein farnesyltransferase,	1e-105
d1n4qb_	346	a.102.4.3 (B:) Protein farnesyltransferase, beta-s	5e-76
d1n4qb_	346	a.102.4.3 (B:) Protein farnesyltransferase, beta-s	1e-18
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	1e-75
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	1e-27
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	5e-21
d2sqca1	352	a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla	4e-05
d1w6ka2	279	a.102.4.2 (A:100-378) Lanosterol synthase {Human (	0.002

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  308 bits (790), Expect = e-105
 Identities = 166/264 (62%), Positives = 191/264 (72%), Gaps = 1/264 (0%)

Query: 7   CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATY 66
           CLDASR W+CYWI HSL LLDEP+     + V  FL  CQSP GGFGGGPGQ PH+A TY
Sbjct: 75  CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTY 134

Query: 67  AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLT 126
           AAVN L I+GT EAY+ INR KL Q+L  LK PDG F +H GGEVD+R  YCA  VA LT
Sbjct: 135 AAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLT 194

Query: 127 QVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
            + + DLF  T EW+  CQ +EGG  G PG EAHGGYTFCG AAL +LK E   ++K+LL
Sbjct: 195 NIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLL 254

Query: 187 RWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHRA 245
           +W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L   GD  L   HW+FH +A
Sbjct: 255 QWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQA 314

Query: 246 LQEYILICCQHFNGGLLDKPENMV 269
           LQEYIL+CCQ   GGLLDKP    
Sbjct: 315 LQEYILMCCQCPAGGLLDKPGKSR 338

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  232 bits (594), Expect = 5e-76
 Identities = 77/294 (26%), Positives = 117/294 (39%), Gaps = 49/294 (16%)

Query: 7   CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSP------------------ 48
            L+ SR  I ++    L +LD  L   +K  ++ ++   Q                    
Sbjct: 25  SLETSRLTIAFFALSGLDMLDS-LDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSY 83

Query: 49  --------NGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPD 100
                          P    HIA TY  ++CLIILG  +  + +++      L+ L+  D
Sbjct: 84  LGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILG--DDLSRVDKEACLAGLRALQLED 141

Query: 101 GGFH-VHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEA 159
           G F  V +G E D+R VYCA C+  +   +S         ++    +Y+ G +   G E+
Sbjct: 142 GSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLES 201

Query: 160 HGGYTFCGFAALCLLKSEHLC----DIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFW 215
           HGG TFCG A+LCL+          ++  + RW   R    + G+ GR NK VD CYSFW
Sbjct: 202 HGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMR---QQNGYHGRPNKPVDTCYSFW 258

Query: 216 QGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKPENMV 269
            G    L            L      +    + YIL       GG    P++  
Sbjct: 259 VGATLKL------------LKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHP 300

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 81.6 bits (201), Expect = 1e-18
 Identities = 33/177 (18%), Positives = 64/177 (36%), Gaps = 9/177 (5%)

Query: 14  WICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLI 73
              Y       +L+   S  D    ++++ +  S + G   G G + H  +T+  +  L 
Sbjct: 156 RFVYCASCICYMLNN-WSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLC 214

Query: 74  ILGTP-EAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSED 132
           ++G   E ++     ++K++         G+H      VD    Y     A L  +    
Sbjct: 215 LMGKLEEVFSEKELNRIKRWCIMR--QQNGYHGRPNKPVDTC--YSFWVGATLKLLKIFQ 270

Query: 133 LFN---NTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
             N   N    L+      GGF+ +P       + + G   L L++   +C +   L
Sbjct: 271 YTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPAL 327

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  231 bits (590), Expect = 1e-75
 Identities = 72/263 (27%), Positives = 110/263 (41%), Gaps = 17/263 (6%)

Query: 7   CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATY 66
             +  R    YW    + L+ + L   +K  ++ F+  CQ   GG     G DPH+  T 
Sbjct: 35  MSEYLRMSGVYWGLTVMDLMGQ-LHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTL 93

Query: 67  AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLT 126
           +AV  L +    ++ + IN  K+  ++Q L+  DG F     GE+D R  +CA+    L 
Sbjct: 94  SAVQILTLY---DSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALL 150

Query: 127 QVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
                       E++ +C  ++GGF   PG E+H G  +C    L +    H  +   L 
Sbjct: 151 GKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLG 210

Query: 187 RWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRAL 246
            W   RQ+   GG  GR  KL D CYS+W      +            +          L
Sbjct: 211 WWLCERQLP-SGGLNGRPEKLPDVCYSWWVLASLKI------------IGRLHWIDREKL 257

Query: 247 QEYILICCQHFNGGLLDKPENMV 269
           + +IL C     GG  D+P +MV
Sbjct: 258 RSFILACQDEETGGFADRPGDMV 280

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  106 bits (265), Expect = 1e-27
 Identities = 48/210 (22%), Positives = 76/210 (36%), Gaps = 4/210 (1%)

Query: 5   GNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAA 64
            +                L+L D      +   VV ++   Q  +G F G    +     
Sbjct: 81  ASIGHDPHLLYTLSAVQILTLYDSI-HVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRF 139

Query: 65  TYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVAL 124
           ++ AV  L +LG  +A   IN  K  +F+      DGGF    G E     +YC      
Sbjct: 140 SFCAVATLALLGKLDA---INVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLA 196

Query: 125 LTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKA 184
           +T    +   +    WL   Q   GG +G P       Y++   A+L ++   H  D + 
Sbjct: 197 ITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREK 256

Query: 185 LLRWTTNRQMNFEGGFQGRTNKLVDGCYSF 214
           L  +    Q    GGF  R   +VD  ++ 
Sbjct: 257 LRSFILACQDEETGGFADRPGDMVDPFHTL 286

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 88.5 bits (219), Expect = 5e-21
 Identities = 38/171 (22%), Positives = 66/171 (38%), Gaps = 5/171 (2%)

Query: 13  AWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCL 72
               +    +L+LL + L + +    + F+  C + +GGFG  PG + H    Y     L
Sbjct: 137 TRFSFCAVATLALLGK-LDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFL 195

Query: 73  IILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCAL-CVALLTQVYSE 131
            I       + +N   L  +L   + P GG +       D+   +  L  + ++ +++  
Sbjct: 196 AITSQL---HQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWI 252

Query: 132 DLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDI 182
           D        L       GGF+  PG      +T  G A L LL  E +  +
Sbjct: 253 DREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPV 303

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 37/225 (16%), Positives = 67/225 (29%), Gaps = 33/225 (14%)

Query: 5   GNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFG----------- 53
                   A + + +   L L DE       +    ++   QS NGG+G           
Sbjct: 93  YYPDVCDTAVVVWALNT-LRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLP 151

Query: 54  --------GGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHV 105
                   G     P    T   + C    G  +A+  I R    ++L+R + PDG +  
Sbjct: 152 NHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAV--EYLKREQKPDGSWFG 209

Query: 106 HDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTF 165
             G             +  +     E       +W+   Q  +GG+           Y  
Sbjct: 210 RWGVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAG 269

Query: 166 CG--------FAALCLLKSEHLCD--IKALLRWTTNRQMNFEGGF 200
            G        +A + L+          +  +++    Q   +GG+
Sbjct: 270 KGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRP-DGGW 313

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 279

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 23 LSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILG 76
            +   PL +  +  +V +L   Q P+GG+G        +  T      L ILG
Sbjct: 13 CHVARIPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILG 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	271
d2h6fb1	401	Protein farnesyltransferase, beta-subunit {Human (	100.0
d1n4qb_	346	Protein farnesyltransferase, beta-subunit {Rat (Ra	100.0
d3dssb1	325	Rab geranylgeranyltransferase, beta subunit {Rat (	100.0
d1n4qb_	346	Protein farnesyltransferase, beta-subunit {Rat (Ra	100.0
d3dssb1	325	Rab geranylgeranyltransferase, beta subunit {Rat (	100.0
d2h6fb1	401	Protein farnesyltransferase, beta-subunit {Human (	100.0
d2sqca1	352	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.89
d2sqca1	352	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.88
d1w6ka1	448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	99.84
d1w6ka1	448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	99.82
d2sqca2	271	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.58
d2sqca2	271	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.03
d1hzfa_	326	C4adg fragment of complement factor C4a {Human (Ho	98.73
d1w6ka2	279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	98.57
d1r76a_	408	Polygalacturonic acid lyase (pectate lyase) {Azosp	98.39
d1c3da_	294	C3D, a C3 fragment and ligand for complement recep	98.37
d1w6ka2	279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	98.31
d1hzfa_	326	C4adg fragment of complement factor C4a {Human (Ho	98.21
d1gxma_	324	Polygalacturonic acid lyase (pectate lyase) {Cellv	98.12
d1r76a_	408	Polygalacturonic acid lyase (pectate lyase) {Azosp	97.79
d1gxma_	324	Polygalacturonic acid lyase (pectate lyase) {Cellv	97.69
d1c3da_	294	C3D, a C3 fragment and ligand for complement recep	97.19

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-76  Score=534.12  Aligned_cols=271  Identities=61%  Similarity=1.129  Sum_probs=256.0

Q ss_pred             CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCc
Q psy15672          1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEA   80 (271)
Q Consensus         1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~   80 (271)
                      ||++|+++|++|+|++||+|++|++|+.++++..++++++||.+||+++|||++.+++.+|+.+||+|+++|.++|.++.
T Consensus        69 lp~~~~~lD~~r~~l~yw~l~~L~LL~~~~~~~~~~~ii~~l~~~q~~~GGF~g~pg~~~hla~Ty~Al~~L~ilg~~~~  148 (401)
T d2h6fb1          69 LTDAYECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEA  148 (401)
T ss_dssp             ECGGGGGGTTCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHH
T ss_pred             CCHHhhccccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHcCCCCCcCCCCCCCcchHHHHHHHHHHHHcCCccc
Confidence            69999999999999999999999999998888889999999999999999999999999999999999999999998655


Q ss_pred             CCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCc
Q psy15672         81 YNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAH  160 (271)
Q Consensus        81 ~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~  160 (271)
                      ++.+|++++++||.++|++||+|...+++|+|+|+||||++++.++|..++++++++++||++||++||||+..|+.|+|
T Consensus       149 ~~~idR~~i~~fL~slQ~pDGsF~~~~~ge~D~R~~Y~Av~i~~lL~~~~~~~~~~~~~~I~scQ~~dGGfg~~pg~EaH  228 (401)
T d2h6fb1         149 YDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAH  228 (401)
T ss_dssp             HTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCC
T ss_pred             cchhhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCCccCCCCCCcc
Confidence            67899999999999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             hhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCC-CCCCcc
Q psy15672        161 GGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDT-CLDGHW  239 (271)
Q Consensus       161 ~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~-~~~~~~  239 (271)
                      +++||||||+|.+||+.+.+|++++++||++||.+.+|||+||+||.+|+|||||++++|.+|+......+.. ....++
T Consensus       229 gg~TfCalAaL~lL~~~~~~d~~~l~~WL~~RQ~~~eGGF~GR~nKlvD~CYSfW~ga~l~lL~~~~~~~~~~~~~~~~~  308 (401)
T d2h6fb1         229 GGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHW  308 (401)
T ss_dssp             HHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCC
T ss_pred             hhHHHHHHHHHHHhCCCcccCHHHHHHHHHHcCCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence            9999999999999999988999999999999999888999999999999999999999999999987654422 223467


Q ss_pred             ccCHHHHHHHHHhhhCCCCCCcCCCCCCCCCC
Q psy15672        240 LFHHRALQEYILICCQHFNGGLLDKPENMVAS  271 (271)
Q Consensus       240 ~~~~~~l~~~il~~~Q~~~GGf~~~p~~~~d~  271 (271)
                      ++|.++|++||+.+||+++|||+|+||+++|+
T Consensus       309 l~d~~~l~~yiL~~~Q~~~GGf~d~Pg~~pD~  340 (401)
T d2h6fb1         309 MFHQQALQEYILMCCQCPAGGLLDKPGKSRDF  340 (401)
T ss_dssp             SSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCH
T ss_pred             ccCHHHHHHHHHHHcCCCCCCcCCCCCCCCCc
Confidence            89999999999988899999999999999995

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.9e-68  Score=474.87  Aligned_cols=253  Identities=31%  Similarity=0.586  Sum_probs=228.4

Q ss_pred             CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCC---------CCC-----------------CC
Q psy15672          1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPN---------GGF-----------------GG   54 (271)
Q Consensus         1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~d---------GGF-----------------~~   54 (271)
                      ||.+|+++|++|+|++||+|++|++|+. ++..+++++++||++||...         |||                 ++
T Consensus        19 lp~~~~~~D~~R~~~~Yw~l~sL~lL~~-l~~~~~~~~i~~l~~~q~~~~~~~~~~~~~gf~gs~~~~~~~~~~~~~~~~   97 (346)
T d1n4qb_          19 LPERYSSLETSRLTIAFFALSGLDMLDS-LDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTA   97 (346)
T ss_dssp             ECGGGGGGGGGHHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCC
T ss_pred             CCHHHHHHHhhhHHHHHHHHHHHHHcCC-CccccHHHHHHHHHHHhccccccccCccccCccCcccccCCCCcccCCCCC
Confidence            6999999999999999999999999996 45667999999999999533         334                 33


Q ss_pred             CCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecc-cCCCCChhHHHHHHHHHHHhCcCChhh
Q psy15672         55 GPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVH-DGGEVDIRGVYCALCVALLTQVYSEDL  133 (271)
Q Consensus        55 ~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~-~~~e~d~~~ty~a~~~l~ll~~~~~~~  133 (271)
                      .+.+.+|+.+||+|+++|.++|++  ++.+|++++++||.++|++||+|... .++|+|+|+||||++++.+++..+.++
T Consensus        98 ~~~~~~hl~~Ty~Al~~L~~lg~~--~~~idr~~i~~~l~~lq~~DGsF~~~~~gge~D~R~tY~A~~i~~lL~~~~~~~  175 (346)
T d1n4qb_          98 HPYDSGHIAMTYTGLSCLIILGDD--LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMD  175 (346)
T ss_dssp             CTTCCCCHHHHHHHHHHHHHTTCC--STTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSC
T ss_pred             CccchhHHHHHHHHHHHHHHhchH--hhHhHHHHHHHHHHHhcCCCCCccccCCCCcchHHHHHHHHHHHHHhCCCcccc
Confidence            445688999999999999999975  57899999999999999999999764 567999999999999999999988889


Q ss_pred             HHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCcc----CHHHHHHHHHhccCCCcCCcCCCCCCCCC
Q psy15672        134 FNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLC----DIKALLRWTTNRQMNFEGGFQGRTNKLVD  209 (271)
Q Consensus       134 ~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~~----~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D  209 (271)
                      ++++++||++||++||||+..|+.|+|+++|||||++|+++++.+.+    +.+++++||++||   +|||+|||||.+|
T Consensus       176 ~~~~~~~I~scq~~DGGfg~~p~~EsHgg~TfCavasL~ll~~~~~~~~~~~~~~l~~WL~~Rq---~gGf~GR~nK~~D  252 (346)
T d1n4qb_         176 MKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ---QNGYHGRPNKPVD  252 (346)
T ss_dssp             HHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB---SSSBCSSTTSCCC
T ss_pred             HHHHHHHHHHhcCcCCCccCCCCCCccHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHhcc---cCCcCCCCCCccc
Confidence            99999999999999999999999999999999999999999986543    6789999999999   6999999999999


Q ss_pred             chhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCCCCCCCCCC
Q psy15672        210 GCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKPENMVAS  271 (271)
Q Consensus       210 ~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~p~~~~d~  271 (271)
                      +|||||++++|.+|+..            .++|.+++++||+.++|++.|||+|+|+++||+
T Consensus       253 ~CYs~W~~~~l~iL~~~------------~~~d~~~l~~yil~~~q~~~GGf~~~p~~~pD~  302 (346)
T d1n4qb_         253 TCYSFWVGATLKLLKIF------------QYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDA  302 (346)
T ss_dssp             TTHHHHHHHHHHHTTCG------------GGSCHHHHHHHHHTTBCTTTCSBCSSTTSCCBH
T ss_pred             hHHHHHHHHHHHHcccc------------cccCHHHHHHHHHHHcCCCCCCcCCCCCCCCcH
Confidence            99999999999999865            268999999999964456799999999999995

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.6e-67  Score=469.17  Aligned_cols=254  Identities=29%  Similarity=0.519  Sum_probs=238.6

Q ss_pred             CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCc
Q psy15672          1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEA   80 (271)
Q Consensus         1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~   80 (271)
                      +|..|...|++|++++||+|++|++|+. .++.+++++++||++||++||||++.+++.+|+.+||+|+++|.+++..  
T Consensus        29 ~~~~~~~~d~~r~~~~yw~l~sL~lLg~-l~~~~~~~~i~~L~s~Q~~dGGf~g~~~~~~~l~~T~~al~~L~l~~~~--  105 (325)
T d3dssb1          29 DDYEYCMSEYLRMSGVYWGLTVMDLMGQ-LHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSI--  105 (325)
T ss_dssp             CGGGSGGGGGGHHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTCG--
T ss_pred             CCccceehhhhHHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhcCCCCCcCCCCCCcccHHHHHHHHHHHHhhccc--
Confidence            4778899999999999999999999996 4567899999999999999999999999999999999999999998763  


Q ss_pred             CCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCc
Q psy15672         81 YNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAH  160 (271)
Q Consensus        81 ~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~  160 (271)
                       +.+|++++++||+++|++||+|...++++.|+|+||||+++++++|..+.++++++++||++||++||||+..|+.|+|
T Consensus       106 -~~~dr~~i~~~L~s~Q~~DGsf~~~~~~e~D~r~ty~Al~~l~ll~~~~~~~~~~~~~~i~scQn~DGGfg~~p~~Esh  184 (325)
T d3dssb1         106 -HVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESH  184 (325)
T ss_dssp             -GGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCC
T ss_pred             -cccCHHHHHHHHHHhhCcCCCCccCCCCCccHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCcCCccccCCCCCC
Confidence             6789999999999999999999998999999999999999999999888889999999999999999999999999999


Q ss_pred             hhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccc
Q psy15672        161 GGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWL  240 (271)
Q Consensus       161 ~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~  240 (271)
                      +++||||+++|.+++..+..+.+++++||.+||.+ +|||+|||||.+|+|||||++++|.+|+..            .+
T Consensus       185 ~g~T~cavasL~ll~~l~~~~~~~l~~wL~~rQ~~-~GGf~GR~~K~~D~cys~W~~~~l~~L~~~------------~~  251 (325)
T d3dssb1         185 AGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLP-SGGLNGRPEKLPDVCYSWWVLASLKIIGRL------------HW  251 (325)
T ss_dssp             HHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCT-TSCBCSSTTCCCCHHHHHHHHHHHHHTTCG------------GG
T ss_pred             cchhHHHHHHHHHhcccccccHHHHHHHHHHhCCC-CCCcCCCCCCCCchHHHHHHHHHHHHcCcc------------cc
Confidence            99999999999999998888999999999999998 899999999999999999999999999875            36


Q ss_pred             cCHHHHHHHHHhhhCCCCCCcCCCCCCCCCC
Q psy15672        241 FHHRALQEYILICCQHFNGGLLDKPENMVAS  271 (271)
Q Consensus       241 ~~~~~l~~~il~~~Q~~~GGf~~~p~~~~d~  271 (271)
                      +|.+++++||+.++|++.|||+|+|+++||+
T Consensus       252 ~d~~~l~~yil~~~q~~~GGf~~~p~~~pD~  282 (325)
T d3dssb1         252 IDREKLRSFILACQDEETGGFADRPGDMVDP  282 (325)
T ss_dssp             SCHHHHHHHHHHTBCTTTCCBCSSTTSCCBH
T ss_pred             ccHHHHHHHHHHHcCCCCCCcCCCCCCCCCh
Confidence            8999999999953356689999999999995

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.1e-45  Score=326.97  Aligned_cols=216  Identities=21%  Similarity=0.270  Sum_probs=200.1

Q ss_pred             ccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCC-CCCCCchHHHHHHHHHHHHhCCCCcCCcC
Q psy15672          6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGG-PGQDPHIAATYAAVNCLIILGTPEAYNCI   84 (271)
Q Consensus         6 ~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~-~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~   84 (271)
                      ...+.+|+..||++|.+|.+|+.+++..+++++++||.++|++||||... .+.++|++.||+|+.++.+|+..   +.+
T Consensus        98 ~~~~~~hl~~Ty~Al~~L~~lg~~~~~idr~~i~~~l~~lq~~DGsF~~~~~gge~D~R~tY~A~~i~~lL~~~---~~~  174 (346)
T d1n4qb_          98 HPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNW---SGM  174 (346)
T ss_dssp             CTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCG---GGS
T ss_pred             CccchhHHHHHHHHHHHHHHhchHhhHhHHHHHHHHHHHhcCCCCCccccCCCCcchHHHHHHHHHHHHHhCCC---ccc
Confidence            34678899999999999999998888889999999999999999999764 46799999999999999999863   578


Q ss_pred             ChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCC----hhhHHHHHHHHHHcccCCCCCCCCCCCCCc
Q psy15672         85 NRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYS----EDLFNNTREWLTACQTYEGGFSGYPGFEAH  160 (271)
Q Consensus        85 ~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~----~~~~~~~~~~l~~~q~~dGGF~~~p~~es~  160 (271)
                      +++++++||.+||+.||||+..|+.|+|..+||||+++|.+++..+    ..+++++++||.++|  +|||++||++.+|
T Consensus       175 ~~~~~~~~I~scq~~DGGfg~~p~~EsHgg~TfCavasL~ll~~~~~~~~~~~~~~l~~WL~~Rq--~gGf~GR~nK~~D  252 (346)
T d1n4qb_         175 DMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVD  252 (346)
T ss_dssp             CHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCC
T ss_pred             cHHHHHHHHHHhcCcCCCccCCCCCCccHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHhcc--cCCcCCCCCCccc
Confidence            8999999999999999999999999999999999999999998653    347899999999998  7999999999999


Q ss_pred             hhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHH
Q psy15672        161 GGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRS  226 (271)
Q Consensus       161 ~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~  226 (271)
                      +||+||+.++|.+|+..+.+|.+++.+||+.+|+...|||+.+|++.||+.|||+++++|+++++.
T Consensus       253 ~CYs~W~~~~l~iL~~~~~~d~~~l~~yil~~~q~~~GGf~~~p~~~pD~~HT~~~l~gLsl~~~~  318 (346)
T d1n4qb_         253 TCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEES  318 (346)
T ss_dssp             TTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTTCSBCSSTTSCCBHHHHHHHHHHHHHTTCT
T ss_pred             hHHHHHHHHHHHHcccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcCCC
Confidence            999999999999999988899999999999997765899999999999999999999999999864

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.3e-44  Score=321.99  Aligned_cols=215  Identities=22%  Similarity=0.298  Sum_probs=201.7

Q ss_pred             CccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChH
Q psy15672          8 LDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRP   87 (271)
Q Consensus         8 ~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~   87 (271)
                      .+.+++..+|+++.+|.+++. .+..+++++++||.++|++||||...++.+++++.||+|+.++.+++..   +.++++
T Consensus        84 ~~~~~l~~T~~al~~L~l~~~-~~~~dr~~i~~~L~s~Q~~DGsf~~~~~~e~D~r~ty~Al~~l~ll~~~---~~~~~~  159 (325)
T d3dssb1          84 GHDPHLLYTLSAVQILTLYDS-IHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKL---DAINVE  159 (325)
T ss_dssp             TSCBCHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCG---GGSCHH
T ss_pred             CCcccHHHHHHHHHHHHhhcc-ccccCHHHHHHHHHHhhCcCCCCccCCCCCccHHHHHHHHHHHHHcCCC---chhhHH
Confidence            346899999999999999876 3566899999999999999999999889999999999999999999963   567899


Q ss_pred             HHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhh
Q psy15672         88 KLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCG  167 (271)
Q Consensus        88 ~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~a  167 (271)
                      ++++||++||++||||+..|+.|+|..+||||+++|.+++..+..+.+++++||.++|..+|||++||++.+|+|||||+
T Consensus       160 ~~~~~i~scQn~DGGfg~~p~~Esh~g~T~cavasL~ll~~l~~~~~~~l~~wL~~rQ~~~GGf~GR~~K~~D~cys~W~  239 (325)
T d3dssb1         160 KAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV  239 (325)
T ss_dssp             HHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHH
T ss_pred             HHHHHHHHhcCCcCCccccCCCCCCcchhHHHHHHHHHhcccccccHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHH
Confidence            99999999999999999999999999999999999999998877889999999999999999999999999999999999


Q ss_pred             hhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHH
Q psy15672        168 FAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRS  226 (271)
Q Consensus       168 l~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~  226 (271)
                      +++|.+||..+.+|.+++++||+.+|+...|||+.+|++.+|+.|||+++++|++++..
T Consensus       240 ~~~l~~L~~~~~~d~~~l~~yil~~~q~~~GGf~~~p~~~pD~~HT~y~l~gLsl~~~~  298 (325)
T d3dssb1         240 LASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEE  298 (325)
T ss_dssp             HHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHcCccccccHHHHHHHHHHHcCCCCCCcCCCCCCCCChHHHHHHHHHHHHCCCC
Confidence            99999999988899999999999998765899999999999999999999999999864

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-43  Score=321.70  Aligned_cols=216  Identities=17%  Similarity=0.196  Sum_probs=197.5

Q ss_pred             CccChHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCC
Q psy15672          8 LDASRAWICYWICHSLSLLDEP--LSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCIN   85 (271)
Q Consensus         8 ~d~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~   85 (271)
                      .+.+|++.||++|.+|.+|+.+  .+..+++++++||.++|++||||...++.++|++.||+|+.++.+|+..   ...+
T Consensus       125 g~~~hla~Ty~Al~~L~ilg~~~~~~~idR~~i~~fL~slQ~pDGsF~~~~~ge~D~R~~Y~Av~i~~lL~~~---~~~~  201 (401)
T d2h6fb1         125 GQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII---TPDL  201 (401)
T ss_dssp             TCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCC---CTTT
T ss_pred             CCCcchHHHHHHHHHHHHcCCccccchhhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHHHHHHHhCCC---CHHH
Confidence            4568999999999999999974  3456799999999999999999999889999999999999999999974   4667


Q ss_pred             hHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccC-CCCCCCCCCCCCchhhh
Q psy15672         86 RPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTY-EGGFSGYPGFEAHGGYT  164 (271)
Q Consensus        86 ~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~-dGGF~~~p~~es~~~~T  164 (271)
                      ++++++||.+||+.||||+..|+.|+|..+||||+++|.++|.....+++++++||.++|.. +|||++||++.+|+||+
T Consensus       202 ~~~~~~~I~scQ~~dGGfg~~pg~EaHgg~TfCalAaL~lL~~~~~~d~~~l~~WL~~RQ~~~eGGF~GR~nKlvD~CYS  281 (401)
T d2h6fb1         202 FEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYS  281 (401)
T ss_dssp             TTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHH
T ss_pred             HHHHHHHHHHccCCCCCccCCCCCCcchhHHHHHHHHHHHhCCCcccCHHHHHHHHHHcCCCCCCccCCCCCCCcchHHH
Confidence            89999999999999999999999999999999999999999988788899999999999965 89999999999999999


Q ss_pred             hhhhhHHHhhccC-------------CccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHH
Q psy15672        165 FCGFAALCLLKSE-------------HLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRS  226 (271)
Q Consensus       165 ~~al~aL~llg~~-------------~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~  226 (271)
                      ||+.++|.+|++.             ...|.+++.+||+.+|+...|||+.+|+|.+|++|||+++++|+++++.
T Consensus       282 fW~ga~l~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yiL~~~Q~~~GGf~d~Pg~~pD~yHT~y~L~gLSl~~~~  356 (401)
T d2h6fb1         282 FWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF  356 (401)
T ss_dssp             HHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHHEE
T ss_pred             HHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHhcCCc
Confidence            9999999999863             1368999999999874434899999999999999999999999999864

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.89  E-value=6.4e-22  Score=176.95  Aligned_cols=239  Identities=18%  Similarity=0.099  Sum_probs=168.3

Q ss_pred             cChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-------------CCCCCCCC--CCCCCchHHHHHHHHHHHH
Q psy15672         10 ASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQS-------------PNGGFGGG--PGQDPHIAATYAAVNCLII   74 (271)
Q Consensus        10 ~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~-------------~dGGF~~~--~~~~~~~~~Ty~Av~~L~~   74 (271)
                      .+.+|.|=|++.+|..-|..-+.....++++||.++|.             +.|||+..  ....++...|..++.+|..
T Consensus        30 ~s~vwdTala~~Al~eaG~~~~~~~l~ka~~~L~~~Q~~~~gd~~~~~~~~~~Ggw~~s~~~~~~p~~d~Ta~~l~aL~~  109 (352)
T d2sqca1          30 ISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNT  109 (352)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCccccccCCCCCCccccHHHHHHhhhh
Confidence            56789999999998877764344467899999999984             23777643  3345788888888888777


Q ss_pred             hCCCCc-CCcCChHHHHHHHHhhcCCCCCeecccC-------------------CCCChhHHHHHHHHHHHhCcC-Chhh
Q psy15672         75 LGTPEA-YNCINRPKLKQFLQRLKAPDGGFHVHDG-------------------GEVDIRGVYCALCVALLTQVY-SEDL  133 (271)
Q Consensus        75 lg~~~~-~~~~~~~~~~~~l~~~q~~dGgf~~~~~-------------------~e~d~~~ty~a~~~l~ll~~~-~~~~  133 (271)
                      +...+. ......+++++||.++|++||||.....                   ..+....|..++.++...+.. ..+.
T Consensus       110 ~~~~~~~~~~~ai~~av~~Lls~Qn~dGGw~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~T~~~l~al~~~g~~~~~~~  189 (352)
T d2sqca1         110 LRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKV  189 (352)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHH
T ss_pred             hcCCchhhHHHHHHHHHHHHHHhhcCCCCcccccccCccchhhccchhhhhhccCCCchHHHHHHHHHHHhcCCchhhHH
Confidence            754311 0011256799999999999999974210                   012233455555555555532 2467


Q ss_pred             HHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCC-ccCHHHHHHHHHhccCCCcCCcCCCC--------
Q psy15672        134 FNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEH-LCDIKALLRWTTNRQMNFEGGFQGRT--------  204 (271)
Q Consensus       134 ~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~-~~~~~~~~~wl~~~Q~~~~GGf~gr~--------  204 (271)
                      ++++++||+++|++||+|.++.+. ++...|+.++.+|..+|... ...++++++||+++|++ +|||...+        
T Consensus       190 I~kav~~L~~~Q~~dG~w~~~~~~-~~~y~t~~~l~aL~~~g~~~~~~~v~ka~~~L~~~Q~~-dGgWg~~~~~~~~~~~  267 (352)
T d2sqca1         190 IRRAVEYLKREQKPDGSWFGRWGV-NYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNP-DGGWGEDCRSYEDPAY  267 (352)
T ss_dssp             HHHHHHHHHHHCCTTSCCCCSSBS-SHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCT-TSCCCCCGGGGTCGGG
T ss_pred             HHHHHHHHHhccCCCCCccccCCC-CcchHHHHHHHHHHhcccccchHHHHHHHHHHHhccCC-CCCcccCcccccCccc
Confidence            899999999999999999776543 56667899999999998743 34578999999999998 89996332        


Q ss_pred             --CCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCC
Q psy15672        205 --NKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLD  263 (271)
Q Consensus       205 --~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~  263 (271)
                        ...+++..|-|++.+|...+..           .. -..++-.+||+ .+|+++|||..
T Consensus       268 ~~~~~s~~~~Ta~al~aL~~a~~~-----------~~-~~i~ra~~~L~-~~Q~~dG~w~~  315 (352)
T d2sqca1         268 AGKGASTPSQTAWALMALIAGGRA-----------ES-EAARRGVQYLV-ETQRPDGGWDE  315 (352)
T ss_dssp             TTCSSCCHHHHHHHHHHHHHTTCS-----------SS-HHHHHHHHHHH-HHCCTTSCCCC
T ss_pred             CCCCCCcHHHHHHHHHHHHhcCCC-----------Cc-HHHHHHHHHHH-HhcCCCCCCCC
Confidence              2345667777888777554321           00 11355578998 58999999974

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.88  E-value=2.1e-21  Score=173.62  Aligned_cols=185  Identities=17%  Similarity=0.208  Sum_probs=141.7

Q ss_pred             HHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCCCCCCCCCCC-------------------CCCchHHHHHHHHH
Q psy15672         14 WICYWICHSLSLLDEPLS---SADKSCVVNFLSQCQSPNGGFGGGPG-------------------QDPHIAATYAAVNC   71 (271)
Q Consensus        14 ~~~y~~l~~L~lL~~~~~---~~~~~~~i~~l~~~q~~dGGF~~~~~-------------------~~~~~~~Ty~Av~~   71 (271)
                      -.+-.++.+|..+...-+   +...+++++||.++|++||||+....                   ..+....|..++.+
T Consensus        98 d~Ta~~l~aL~~~~~~~~~~~~~ai~~av~~Lls~Qn~dGGw~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~T~~~l~a  177 (352)
T d2sqca1          98 CDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLEC  177 (352)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHH
T ss_pred             ccHHHHHHhhhhhcCCchhhHHHHHHHHHHHHHHhhcCCCCcccccccCccchhhccchhhhhhccCCCchHHHHHHHHH
Confidence            344456666666654311   23466789999999999999974311                   24567788899998


Q ss_pred             HHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcC-ChhhHHHHHHHHHHcccCCCC
Q psy15672         72 LIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVY-SEDLFNNTREWLTACQTYEGG  150 (271)
Q Consensus        72 L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~-~~~~~~~~~~~l~~~q~~dGG  150 (271)
                      |...+..+  ....++++++||.+.|++||+|... ++..++..|+.++.+|..+|.. ..+.++++++||+++|++|||
T Consensus       178 l~~~g~~~--~~~~I~kav~~L~~~Q~~dG~w~~~-~~~~~~y~t~~~l~aL~~~g~~~~~~~v~ka~~~L~~~Q~~dGg  254 (352)
T d2sqca1         178 FGSFGYDD--AWKVIRRAVEYLKREQKPDGSWFGR-WGVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGG  254 (352)
T ss_dssp             HHTTTCCT--TSHHHHHHHHHHHHHCCTTSCCCCS-SBSSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSC
T ss_pred             HHhcCCch--hhHHHHHHHHHHHhccCCCCCcccc-CCCCcchHHHHHHHHHHhcccccchHHHHHHHHHHHhccCCCCC
Confidence            88887642  2234789999999999999999764 3455677788888888888753 456789999999999999999


Q ss_pred             CCCC----------CCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCC
Q psy15672        151 FSGY----------PGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQG  202 (271)
Q Consensus       151 F~~~----------p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~g  202 (271)
                      |+..          +...+++..|.||+.+|...+......+++.++||+++|++ +|||.-
T Consensus       255 Wg~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~a~~~~~~~i~ra~~~L~~~Q~~-dG~w~~  315 (352)
T d2sqca1         255 WGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRP-DGGWDE  315 (352)
T ss_dssp             CCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHCCT-TSCCCC
T ss_pred             cccCcccccCcccCCCCCCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC-CCCCCC
Confidence            9743          33457788899999999988876555578999999999998 899984

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.6e-20  Score=169.05  Aligned_cols=196  Identities=15%  Similarity=0.144  Sum_probs=148.3

Q ss_pred             HHHHHHHHHHHcC-------CCCChhhHHHHHHHHHhcCCCCCCCCCCC---------------------CCCCchHHHH
Q psy15672         15 ICYWICHSLSLLD-------EPLSSADKSCVVNFLSQCQSPNGGFGGGP---------------------GQDPHIAATY   66 (271)
Q Consensus        15 ~~y~~l~~L~lL~-------~~~~~~~~~~~i~~l~~~q~~dGGF~~~~---------------------~~~~~~~~Ty   66 (271)
                      .|--+|.+|.++.       ..+++....++++||+++||+||||+...                     -+.+.+..|.
T Consensus       172 dTA~~l~al~~~~~~~~~~~~~~~~~~i~~av~wLl~mQn~dGGw~afd~~~~~~~l~~~~~~~~~~~~~~D~s~~d~T~  251 (448)
T d1w6ka1         172 CTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTS  251 (448)
T ss_dssp             HHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHH
T ss_pred             cHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHHhcCCCCCeeeccCCCChhhhhcccchhhhhccccCCCcchHHH
Confidence            4555666665442       23455667889999999999999998531                     1356778899


Q ss_pred             HHHHHHHHhCCCCcCC-----cCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCC-----hhhHHH
Q psy15672         67 AAVNCLIILGTPEAYN-----CINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYS-----EDLFNN  136 (271)
Q Consensus        67 ~Av~~L~~lg~~~~~~-----~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~-----~~~~~~  136 (271)
                      .++.+|..++......     ...++++++||.+.|++||+|... ++...+..|.+++.+|...|...     .+.+++
T Consensus       252 ~~l~aL~~~~~~~p~~r~~~~~~~i~ral~yL~~~Q~~DGsW~g~-wg~~~~ygT~~al~aL~~~G~~~~~~~~~~~v~k  330 (448)
T d1w6ka1         252 AVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGS-WGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSR  330 (448)
T ss_dssp             HHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCS-SBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHH
T ss_pred             HHHHHHHHHhhhCCccccccchHHHHHHHHHHHccCCCCCccccc-CCCcccHHHHHHHHHHHHhCcCcccccccHHHHH
Confidence            9999998886421000     112678999999999999999765 45556778888888888887532     256899


Q ss_pred             HHHHHHHcccCCCCCCC----------CCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCC--
Q psy15672        137 TREWLTACQTYEGGFSG----------YPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRT--  204 (271)
Q Consensus       137 ~~~~l~~~q~~dGGF~~----------~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~--  204 (271)
                      +++||+++|++||||+.          .++..+++..|.|||.+|...|......+++.++||+++|.+ +|+|.-..  
T Consensus       331 a~~wLls~Q~~DGGWge~~~s~~~~~~~~~~~s~~~~TAwAl~aL~~ag~~~~~~v~rgv~~L~~~Q~~-~G~W~~~~~~  409 (448)
T d1w6ka1         331 ACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLP-NGDWPQENIA  409 (448)
T ss_dssp             HHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCT-TSCCCCCSCC
T ss_pred             HHHHHHhccCCCCCccCCCccccCcccCCCCCCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCC-CCCCCCCcee
Confidence            99999999999999975          345678899999999999988876655689999999999998 89997443  


Q ss_pred             CCCCCchh
Q psy15672        205 NKLVDGCY  212 (271)
Q Consensus       205 ~k~~D~cy  212 (271)
                      +.++-.||
T Consensus       410 g~f~~~~~  417 (448)
T d1w6ka1         410 GVFNKSCA  417 (448)
T ss_dssp             EEETTTEE
T ss_pred             eeecccce
Confidence            23455554

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.3e-19  Score=160.31  Aligned_cols=241  Identities=16%  Similarity=0.171  Sum_probs=171.0

Q ss_pred             ccChHHHHHHHHHHHHHcCCC-CC--hhhHHHHHHHHHhcCCCC--------------CCCCCC--CCCCCchHHHHHHH
Q psy15672          9 DASRAWICYWICHSLSLLDEP-LS--SADKSCVVNFLSQCQSPN--------------GGFGGG--PGQDPHIAATYAAV   69 (271)
Q Consensus         9 d~~~~~~~y~~l~~L~lL~~~-~~--~~~~~~~i~~l~~~q~~d--------------GGF~~~--~~~~~~~~~Ty~Av   69 (271)
                      +.+.+|-|=+++.+|.--|.. .+  ....+++.+||+..|..+              |||+..  ....++...|..++
T Consensus        98 ~~S~vWDTal~~~AL~~ag~~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~n~~~Pd~DdTA~~l  177 (448)
T d1w6ka1          98 NGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEAL  177 (448)
T ss_dssp             SCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHhhccCcCCCcchhhcCCCCCCceeCCcCCCCCCCCccHHHHH
Confidence            447889999999999877632 12  234788999999998643              666643  23468888999999


Q ss_pred             HHHHHhCCC--CcCCcCC---hHHHHHHHHhhcCCCCCeecccC---------------------CCCChhHHHHHHHHH
Q psy15672         70 NCLIILGTP--EAYNCIN---RPKLKQFLQRLKAPDGGFHVHDG---------------------GEVDIRGVYCALCVA  123 (271)
Q Consensus        70 ~~L~~lg~~--~~~~~~~---~~~~~~~l~~~q~~dGgf~~~~~---------------------~e~d~~~ty~a~~~l  123 (271)
                      .+|..+...  ..-+.++   ..++++||.++|++||||.....                     ..+....|..++.+|
T Consensus       178 ~al~~~~~~~~~~~~~~~~~~i~~av~wLl~mQn~dGGw~afd~~~~~~~l~~~~~~~~~~~~~~D~s~~d~T~~~l~aL  257 (448)
T d1w6ka1         178 KAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQAL  257 (448)
T ss_dssp             HHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHH
T ss_pred             HHHHHHhccCccccccccHHHHHHHHHHHHHhcCCCCCeeeccCCCChhhhhcccchhhhhccccCCCcchHHHHHHHHH
Confidence            888776431  1112233   45699999999999999974210                     123344567777777


Q ss_pred             HHhCcC--C------hhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCc-----cCHHHHHHHHH
Q psy15672        124 LLTQVY--S------EDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHL-----CDIKALLRWTT  190 (271)
Q Consensus       124 ~ll~~~--~------~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~-----~~~~~~~~wl~  190 (271)
                      ..++..  +      ...++++++||++.|++||+|.++.+. .+...|++++.+|..+|....     ..++++++||+
T Consensus       258 ~~~~~~~p~~r~~~~~~~i~ral~yL~~~Q~~DGsW~g~wg~-~~~ygT~~al~aL~~~G~~~~~~~~~~~v~ka~~wLl  336 (448)
T d1w6ka1         258 KYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGV-CFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLL  336 (448)
T ss_dssp             HHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBS-SHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHH
T ss_pred             HHHhhhCCccccccchHHHHHHHHHHHccCCCCCcccccCCC-cccHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHH
Confidence            665421  1      245789999999999999999877654 466679999999999987431     24789999999


Q ss_pred             hccCCCcCCcCC----------CCCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCC
Q psy15672        191 NRQMNFEGGFQG----------RTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGG  260 (271)
Q Consensus       191 ~~Q~~~~GGf~g----------r~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GG  260 (271)
                      ++|++ +|||..          .++..+++--|=|++-+|-..+..           + ..-.++-.+||+ .+|+++|+
T Consensus       337 s~Q~~-DGGWge~~~s~~~~~~~~~~~s~~~~TAwAl~aL~~ag~~-----------~-~~~v~rgv~~L~-~~Q~~~G~  402 (448)
T d1w6ka1         337 SRQMA-DGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHP-----------D-IEAQERGVRCLL-EKQLPNGD  402 (448)
T ss_dssp             TTCCT-TSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCS-----------C-HHHHHHHHHHHH-HHCCTTSC
T ss_pred             hccCC-CCCccCCCccccCcccCCCCCCcHHHHHHHHHHHHhcCCC-----------C-cHHHHHHHHHHH-HccCCCCC
Confidence            99998 899964          335567888888888776543321           0 123466779998 58999999


Q ss_pred             cCCC
Q psy15672        261 LLDK  264 (271)
Q Consensus       261 f~~~  264 (271)
                      |...
T Consensus       403 W~~~  406 (448)
T d1w6ka1         403 WPQE  406 (448)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8653

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.58  E-value=2.6e-14  Score=122.45  Aligned_cols=181  Identities=17%  Similarity=0.162  Sum_probs=127.4

Q ss_pred             ChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHH
Q psy15672         11 SRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLK   90 (271)
Q Consensus        11 ~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~   90 (271)
                      ++.+++.-.|..+.++|. +++..++++++||+++|++||||+..++..+++..|..|+.+|.++|...  +.....++.
T Consensus         2 ~~~~~~a~~i~~~~~~g~-~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~T~~~~~AL~~~g~~~--~~~~~~ra~   78 (271)
T d2sqca2           2 SNVTMEAEYVLLCHILDR-VDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSR--DEEPMQKAL   78 (271)
T ss_dssp             CCTHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHSCTTSCCCSSTTCCCCHHHHHHHHHHHHHHTCCT--TSHHHHHHH
T ss_pred             CcccccHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCCCCCccCCCCCCCcHHHHHHHHHHHHHhCCCC--chHHHHHHH
Confidence            456778888999999995 67888999999999999999999988888999999999999999999642  233467888


Q ss_pred             HHHHhhcCCCCC-------------ee--cc----------cC--------CCCChhHHHHHHHHH--------------
Q psy15672         91 QFLQRLKAPDGG-------------FH--VH----------DG--------GEVDIRGVYCALCVA--------------  123 (271)
Q Consensus        91 ~~l~~~q~~dGg-------------f~--~~----------~~--------~e~d~~~ty~a~~~l--------------  123 (271)
                      +||.+.....+.             +.  ..          |.        -..+.|.++..++.+              
T Consensus        79 ~~i~~~GG~~~~~~~~k~~LA~~G~~~w~~v~~iP~E~~llP~~~p~~p~~~~~~~R~v~~p~~~l~~~~~~~~~~~~~~  158 (271)
T d2sqca2          79 RFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERAR  158 (271)
T ss_dssp             HHHHHTTCGGGSCHHHHHHHHHTTSSCGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHHCCCCCCCGGGC
T ss_pred             HHHHHcCCcccCchHHHHHHHhcCCCCccccCCCCHHHHcCCCccccCchhhheehhhhhhhHHHhhccCccCCCchhhH
Confidence            888887432211             00  00          00        001123333322221              


Q ss_pred             -------------------------------H---HhCc--CChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhh
Q psy15672        124 -------------------------------L---LTQV--YSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCG  167 (271)
Q Consensus       124 -------------------------------~---ll~~--~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~a  167 (271)
                                                     .   .+..  .....++++++||+++|++|||++..      ...|+++
T Consensus       159 l~eL~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~l~~~~lr~~a~~~a~~wl~~~q~~dGgwG~i------~p~~~~~  232 (271)
T d2sqca2         159 VPELYETDVPPRRRGAKGGGGWIFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGI------QPPWFYA  232 (271)
T ss_dssp             CGGGGCCSSCCCCCCCTTCCCHHHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHCCTTSSSTTS------HHHHHHH
T ss_pred             HHHHhcCCCccccccccccccHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHccCCCCcccc------CHHHHHH
Confidence                                           1   1111  11245688999999999999999742      1247899


Q ss_pred             hhHHHhhccCCccCHHHHHHHHHh--ccCCCcCCcC
Q psy15672        168 FAALCLLKSEHLCDIKALLRWTTN--RQMNFEGGFQ  201 (271)
Q Consensus       168 l~aL~llg~~~~~~~~~~~~wl~~--~Q~~~~GGf~  201 (271)
                      |.+|..+|..+.+.+++.+++|.+  -|.+ +||+.
T Consensus       233 l~aL~~~G~~~~p~v~r~l~~l~~~~~~~~-dG~~~  267 (271)
T d2sqca2         233 LIALKILDMTQHPAFIKGWEGLELYGVELD-YGGWM  267 (271)
T ss_dssp             HHHHHHTTCTTSHHHHHHHHGGGGGEEECT-TSCEE
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHheeEcC-CCcee
Confidence            999999997655578999999976  3555 77754

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.03  E-value=5.5e-10  Score=95.06  Aligned_cols=84  Identities=14%  Similarity=0.175  Sum_probs=70.9

Q ss_pred             CchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcC-ChhhHHHHH
Q psy15672         60 PHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVY-SEDLFNNTR  138 (271)
Q Consensus        60 ~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~-~~~~~~~~~  138 (271)
                      +|+..|...|..+.++|..   +....+++++||.+.|++||||+..+++.+|+..|.-++.+|.++|.. +.....++.
T Consensus         2 ~~~~~~a~~i~~~~~~g~~---~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~T~~~~~AL~~~g~~~~~~~~~ra~   78 (271)
T d2sqca2           2 SNVTMEAEYVLLCHILDRV---DRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKAL   78 (271)
T ss_dssp             CCTHHHHHHHHHHHHTTCC---CHHHHHHHHHHHHHHSCTTSCCCSSTTCCCCHHHHHHHHHHHHHHTCCTTSHHHHHHH
T ss_pred             CcccccHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCCCCCccCCCCCCCcHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence            4667788889999999963   334478999999999999999998888899999999999999999854 346789999


Q ss_pred             HHHHHccc
Q psy15672        139 EWLTACQT  146 (271)
Q Consensus       139 ~~l~~~q~  146 (271)
                      +||++.+.
T Consensus        79 ~~i~~~GG   86 (271)
T d2sqca2          79 RFIQSQGG   86 (271)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHcCC
Confidence            99999853

>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C4adg fragment of complement factor C4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.1e-07  Score=81.89  Aligned_cols=104  Identities=12%  Similarity=-0.008  Sum_probs=69.4

Q ss_pred             CCCCccCccChHHHHHHHHHHHHHcCCC--CChh-------hHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHH
Q psy15672          2 SRVGNCLDASRAWICYWICHSLSLLDEP--LSSA-------DKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCL   72 (271)
Q Consensus         2 p~~~~~~d~~~~~~~y~~l~~L~lL~~~--~~~~-------~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L   72 (271)
                      |.-+.-|-.++.....++..-|...+..  +++.       .+++.++-|.+.|++||||+..++..++.+.|.+++..|
T Consensus        12 PyGC~EQt~s~~~p~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~rl~~~Q~~dGgf~~w~~~~~~~wlTayv~~~L   91 (326)
T d1hzfa_          12 PRGCGEQTMIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVL   91 (326)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHTTCSTTSCTTHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCchHHHHHHHHHH
Confidence            3333334445555444555545544431  2221       245566778899999999999888888999999999998


Q ss_pred             HHhCCCCcCCcCChHHHHHHHHhhcCCCCCeec
Q psy15672         73 IILGTPEAYNCINRPKLKQFLQRLKAPDGGFHV  105 (271)
Q Consensus        73 ~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~  105 (271)
                      ..+..........+.+.+.|+.+.|.++|+|..
T Consensus        92 ~~A~~~g~~~~~~~~~~~~~~l~~q~~~g~~~~  124 (326)
T d1hzfa_          92 SLAQEQVGGSPEKLQETSNWLLSQQQADGSFQD  124 (326)
T ss_dssp             HHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCC
T ss_pred             HHHHHhcccchhhHHhHHHHHHHHhhhcccccc
Confidence            887542111122356688999999999999864

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=6.9e-08  Score=81.47  Aligned_cols=76  Identities=20%  Similarity=0.293  Sum_probs=66.4

Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhh
Q psy15672         19 ICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRL   96 (271)
Q Consensus        19 ~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~   96 (271)
                      .|.+|.++|..++++.++++++||.++|++||||+...+..+++..|..|..+|.++|.+.  +.....++.+||.+.
T Consensus         9 ~Vial~i~g~~~~~e~~~e~~ryL~~~Q~~DGgWg~~~~g~s~i~~T~~ay~ALrl~G~~~--~~p~m~rAr~wI~~~   84 (279)
T d1w6ka2           9 LLITCHVARIPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGP--DDPDLVRARNILHKK   84 (279)
T ss_dssp             HHHHHHHHTCCCCTTHHHHHHHHHHHHSCTTSCBCSBTTSCCBHHHHHHHHHHHHHTTCCT--TSHHHHHHHHHHHHT
T ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCCccCCCCCCccHHHHHHHHHHHHHhCCCC--CcHHHHHHHHHHHhC
Confidence            3577888898888888999999999999999999988888999999999999999999752  334578899999887

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Azospirillum irakense [TaxId: 34011]

Probab=98.39  E-value=1.1e-06  Score=77.74  Aligned_cols=166  Identities=16%  Similarity=0.148  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHhcCCCCCCCCCCC---------C-----------------------------CCCchHHHHHHHHHHHHh
Q psy15672         34 DKSCVVNFLSQCQSPNGGFGGGP---------G-----------------------------QDPHIAATYAAVNCLIIL   75 (271)
Q Consensus        34 ~~~~~i~~l~~~q~~dGGF~~~~---------~-----------------------------~~~~~~~Ty~Av~~L~~l   75 (271)
                      +-+++.+.|+..|+++|||.-..         .                             ...|-..|..++..|..+
T Consensus        82 eA~~iAd~lL~~Q~p~GGWpKn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiDN~aTt~el~~La~~  161 (408)
T d1r76a_          82 AARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQV  161 (408)
T ss_dssp             HHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCCCccccccccccchhhhhhhccccccccchhhhhhhhhhcccCCCcCcchHHHHHHHHHHH
Confidence            45678999999999999995310         0                             011223477777777655


Q ss_pred             CC---CCcCC--cCChHHHHHHHHhhcCCCCCeecc-cCCC--------CChhHHHHHHHHHHHh----C---cCC----
Q psy15672         76 GT---PEAYN--CINRPKLKQFLQRLKAPDGGFHVH-DGGE--------VDIRGVYCALCVALLT----Q---VYS----  130 (271)
Q Consensus        76 g~---~~~~~--~~~~~~~~~~l~~~q~~dGgf~~~-~~~e--------~d~~~ty~a~~~l~ll----~---~~~----  130 (271)
                      -.   +....  .-..+++++||.+.|++||||... +...        .|- .+--++.+|..+    +   ..+    
T Consensus       162 ~~~~~~~~~~~y~~a~~~~~~~ll~~Q~~~Ggwpqf~p~~~~Y~~~ItfND~-~m~~~l~~l~~~~~~~~~~~~~~~~~r  240 (408)
T d1r76a_         162 VSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDD-ALVHVAELLSDIAAGRDGFGFVPPAIR  240 (408)
T ss_dssp             HHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGG-HHHHHHHHHHHHHHTCTTCTTSCHHHH
T ss_pred             HHHcCcccchhHHHHHHHHHHHHHHhhCCCCCccccCCCCcccccccccCch-HHHHHHHHHHHHHHhccccccCCHHHH
Confidence            21   10000  012567999999999999999753 1111        111 112233333222    1   111    


Q ss_pred             ---hhhHHHHHHHHHHcccCCCCCCCC-----------CCC----C-C--chhhhhhhhhHHHhhccCCcc---CHHHHH
Q psy15672        131 ---EDLFNNTREWLTACQTYEGGFSGY-----------PGF----E-A--HGGYTFCGFAALCLLKSEHLC---DIKALL  186 (271)
Q Consensus       131 ---~~~~~~~~~~l~~~q~~dGGF~~~-----------p~~----e-s--~~~~T~~al~aL~llg~~~~~---~~~~~~  186 (271)
                         ...++++++||+++|..+||+-.+           |-.    | +  -+..|.++|..|.-+......   .+++++
T Consensus       241 ~r~~~a~~rgi~~ll~~Q~~~gg~~~~Wg~Qhd~~tl~P~~aR~yE~~sls~~eS~~i~~~LM~~~~ps~~~~~aI~~av  320 (408)
T d1r76a_         241 TRALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGV  320 (408)
T ss_dssp             HHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCcChHhhccCccccCcccccccCChhhhhhhHHHHHHHHHhCCCCChhHHHHHHHHH
Confidence               135788999999999999985221           110    1 1  223455666655555443211   368899


Q ss_pred             HHHHhccCCCcCCcC
Q psy15672        187 RWTTNRQMNFEGGFQ  201 (271)
Q Consensus       187 ~wl~~~Q~~~~GGf~  201 (271)
                      .||.+.|.+ ++++-
T Consensus       321 ~Wl~~~~~~-~~~~~  334 (408)
T d1r76a_         321 AWLNTSVIR-DRAWV  334 (408)
T ss_dssp             HHHHHSCCC-C----
T ss_pred             HHHHhcccC-Cceee
Confidence            999999876 55553

>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C3D, a C3 fragment and ligand for complement receptor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=8.6e-06  Score=68.46  Aligned_cols=101  Identities=13%  Similarity=0.019  Sum_probs=65.3

Q ss_pred             CCCCccCccChHHHHHHHHHHHHHcCCC--CChh-------hHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHH
Q psy15672          2 SRVGNCLDASRAWICYWICHSLSLLDEP--LSSA-------DKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCL   72 (271)
Q Consensus         2 p~~~~~~d~~~~~~~y~~l~~L~lL~~~--~~~~-------~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L   72 (271)
                      |.-+.-|-.++.....++..-|...+..  .+..       .+++.+.=|.+.|++||||+..++..++.+.|.+++..|
T Consensus        14 PyGC~EQt~s~~~p~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~gi~rl~~~Q~~dGgf~~w~~~~~~~~lTayv~~~L   93 (294)
T d1c3da_          14 PSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVF   93 (294)
T ss_dssp             CCSSTTHHHHHHHHHHHHHHHHHHTTCSTTTCGGGHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHhhhcccChhHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCCcchHHHHHHHH
Confidence            4444445555555555554444444331  1211       245566778899999999999888888999999999998


Q ss_pred             HHhCCCCcCCcCC----hHHHHHHHHhhcCCCCCeec
Q psy15672         73 IILGTPEAYNCIN----RPKLKQFLQRLKAPDGGFHV  105 (271)
Q Consensus        73 ~~lg~~~~~~~~~----~~~~~~~l~~~q~~dGgf~~  105 (271)
                      ......   ..++    .+.+..++.+.|..+|.|..
T Consensus        94 ~~A~~~---g~~~~~~~~~~~~~~l~~~~~~~~~~~e  127 (294)
T d1c3da_          94 SLAVNL---IAIDSQVLCGAVKWLILEKQKPDGVFQE  127 (294)
T ss_dssp             HHTTTT---SCCCHHHHHHHHHHHHHHHBCTTSCBCC
T ss_pred             HHHHHh---cccChHHHHHHHHHHHHhhhhcCCCccc
Confidence            887642   1122    23355567778889888853

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=8.9e-07  Score=74.52  Aligned_cols=79  Identities=15%  Similarity=0.185  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcC-ChhhHHHHHHHHHH
Q psy15672         65 TYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVY-SEDLFNNTREWLTA  143 (271)
Q Consensus        65 Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~-~~~~~~~~~~~l~~  143 (271)
                      |-.-|.+|.++|..  .+...++++++||.+.|++||||+...++.+++..|.-+..+|.++|.. +.+...++.+||++
T Consensus         6 ~p~~Vial~i~g~~--~~~e~~~e~~ryL~~~Q~~DGgWg~~~~g~s~i~~T~~ay~ALrl~G~~~~~p~m~rAr~wI~~   83 (279)
T d1w6ka2           6 LPGLLITCHVARIP--LPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDDPDLVRARNILHK   83 (279)
T ss_dssp             HHHHHHHHHHHTCC--CCTTHHHHHHHHHHHHSCTTSCBCSBTTSCCBHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred             hhHHHHHHhhcCCC--CCHHHHHHHHHHHHHhhcCCCCccCCCCCCccHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHh
Confidence            34457788899863  3344578999999999999999999889999999999999999999864 45678999999998


Q ss_pred             cc
Q psy15672        144 CQ  145 (271)
Q Consensus       144 ~q  145 (271)
                      +-
T Consensus        84 ~G   85 (279)
T d1w6ka2          84 KG   85 (279)
T ss_dssp             TT
T ss_pred             CC
Confidence            73

>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C4adg fragment of complement factor C4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=6.2e-06  Score=70.62  Aligned_cols=91  Identities=19%  Similarity=0.089  Sum_probs=67.7

Q ss_pred             hHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHh---CcCChhhHHHHHHHHHHcccCCCCCCCCCC------
Q psy15672         86 RPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLT---QVYSEDLFNNTREWLTACQTYEGGFSGYPG------  156 (271)
Q Consensus        86 ~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll---~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~------  156 (271)
                      +++.+.-|.+.|++||||+..++++++...|-.++..|..+   +...+..+.+.+.|+++.|..+|+|.....      
T Consensus        54 i~~g~~rl~~~Q~~dGgf~~w~~~~~~~wlTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~q~~~g~~~~~~~~~~~~~  133 (326)
T d1hzfa_          54 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSM  133 (326)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGG
T ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCCchHHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHhhhcccccccccccCHHH
Confidence            35567778899999999999988888888888888777765   444567788899999999999999865321      


Q ss_pred             ------CCCchhhhhhhhhHHHhhcc
Q psy15672        157 ------FEAHGGYTFCGFAALCLLKS  176 (271)
Q Consensus       157 ------~es~~~~T~~al~aL~llg~  176 (271)
                            .+.....|.+++-+|...+.
T Consensus       134 ~~~~~~~~~~~~~tAyvl~aL~~~~~  159 (326)
T d1hzfa_         134 QGGLVGNDETVALTAFVTIALHHGLA  159 (326)
T ss_dssp             GGGGSSTTHHHHHHHHHHHHHHHHHT
T ss_pred             hccccccccchhHHHHHHHHHHHccc
Confidence                  12233456677777766554

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Cellvibrio cellulosa [TaxId: 155077]

Probab=98.12  E-value=3.9e-07  Score=78.10  Aligned_cols=160  Identities=18%  Similarity=0.204  Sum_probs=88.3

Q ss_pred             HHHHHHHhcCCCCCCCCCC-----CCC------C--CchHHHHHHHHHHHHhCC---CCcCCcCChHHHHHHHHhhcCCC
Q psy15672         37 CVVNFLSQCQSPNGGFGGG-----PGQ------D--PHIAATYAAVNCLIILGT---PEAYNCINRPKLKQFLQRLKAPD  100 (271)
Q Consensus        37 ~~i~~l~~~q~~dGGF~~~-----~~~------~--~~~~~Ty~Av~~L~~lg~---~~~~~~~~~~~~~~~l~~~q~~d  100 (271)
                      +..++|++.|+++|||.-.     +..      .  -|-..|..++..|..+..   ++.+ .-...++++||.+.|.+|
T Consensus        27 ~~Ad~ll~~Q~~~GGW~Kn~d~~~~~~~~~~~~~sTiDn~AT~~~i~~La~~~~~~~d~~~-~~A~~Rgi~~LL~~Q~~n  105 (324)
T d1gxma_          27 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKY-RDAVRKAANFLVNSQYST  105 (324)
T ss_dssp             GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHCCTT
T ss_pred             hhhHHHHhcCCCCCCCCccccccCCCCCccCCCCCcccChHHHHHHHHHHHHHHhcCChhH-HHHHHHHHHHHHhhccCC
Confidence            4678899999999999721     000      0  133356666665554432   1111 113578999999999999


Q ss_pred             CCeecc-cCC-C--CChh----HHHHHHHHHHHh--C-------cCC-------hhhHHHHHHHHHHcccCCCCCCCC--
Q psy15672        101 GGFHVH-DGG-E--VDIR----GVYCALCVALLT--Q-------VYS-------EDLFNNTREWLTACQTYEGGFSGY--  154 (271)
Q Consensus       101 Ggf~~~-~~~-e--~d~~----~ty~a~~~l~ll--~-------~~~-------~~~~~~~~~~l~~~q~~dGGF~~~--  154 (271)
                      |||... |.. .  .++.    .+.-++..|...  +       ...       ...++++++||+++|..+||+-.+  
T Consensus       106 GGWpqf~P~~~~y~~~ItFND~am~~vl~lL~~~a~~~~~~~~~~~~~~~r~r~~~A~~Rgi~~lL~~Q~~~gg~~t~Wg  185 (324)
T d1gxma_         106 GALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWC  185 (324)
T ss_dssp             SCCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCC
T ss_pred             CCccccccCCCCcccccCCCcHHHHHHHHHhchhhccccchhHHHhhhhhhHhHHHHHHHHHHHHHHhhcccCCCCChhh
Confidence            999753 221 1  1111    111122222211  1       111       135689999999999999885321  


Q ss_pred             ---------CCC----C-C--chhhhhhhhhHHHhhccCCcc----CHHHHHHHHHhccCCCcCCc
Q psy15672        155 ---------PGF----E-A--HGGYTFCGFAALCLLKSEHLC----DIKALLRWTTNRQMNFEGGF  200 (271)
Q Consensus       155 ---------p~~----e-s--~~~~T~~al~aL~llg~~~~~----~~~~~~~wl~~~Q~~~~GGf  200 (271)
                               |-.    | +  .+..|...|..|..  ..+..    -++.++.|+.+.+.. ..|+
T Consensus       186 ~Qhd~~tl~Pa~AR~yE~~sls~~ES~~iv~~LM~--~~~s~~i~~ai~~avaWl~~~k~~-~~~~  248 (324)
T d1gxma_         186 AQHGALDYQPKKARAYELESLSGSESVGVLAFLMT--QPQTAEIEQAVRAGVAWFNSPRTY-LEGY  248 (324)
T ss_dssp             SEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTT--SCCCHHHHHHHHHHHHHHTCTTTS-EEEE
T ss_pred             hccCcccccccccccccChhhhhhhHHHHHHHHhh--cCCcHHHHHHHHHHHHHHHhchhc-ccce
Confidence                     111    1 1  22335555555443  33222    257788999988765 4454

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Azospirillum irakense [TaxId: 34011]

Probab=97.79  E-value=6.3e-05  Score=66.15  Aligned_cols=121  Identities=13%  Similarity=0.152  Sum_probs=67.3

Q ss_pred             hHHHHHHHHHhcCCCCCCCCCCC-C---CCCch----HHHHHHHHHHHHhCC-CCcCCcC----------ChHHHHHHHH
Q psy15672         34 DKSCVVNFLSQCQSPNGGFGGGP-G---QDPHI----AATYAAVNCLIILGT-PEAYNCI----------NRPKLKQFLQ   94 (271)
Q Consensus        34 ~~~~~i~~l~~~q~~dGGF~~~~-~---~~~~~----~~Ty~Av~~L~~lg~-~~~~~~~----------~~~~~~~~l~   94 (271)
                      ...++++||++.|++||||.... .   +..|+    ..+..++..|..+.. ...+..+          ..+++++||.
T Consensus       176 a~~~~~~~ll~~Q~~~Ggwpqf~p~~~~Y~~~ItfND~~m~~~l~~l~~~~~~~~~~~~~~~~~r~r~~~a~~rgi~~ll  255 (408)
T d1r76a_         176 AALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIV  255 (408)
T ss_dssp             HHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCCccccCCCCcccccccccCchHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHH
Confidence            35679999999999999997532 1   11111    122223333333221 1111222          2477999999


Q ss_pred             hhcCCCCCeecccCC---C-------------CChhHHHHHHHHHHHhCc--CChh---hHHHHHHHHHHcccCCCCCCC
Q psy15672         95 RLKAPDGGFHVHDGG---E-------------VDIRGVYCALCVALLTQV--YSED---LFNNTREWLTACQTYEGGFSG  153 (271)
Q Consensus        95 ~~q~~dGgf~~~~~~---e-------------~d~~~ty~a~~~l~ll~~--~~~~---~~~~~~~~l~~~q~~dGGF~~  153 (271)
                      +.|.++|||....+.   +             ..+..+-++..++.|+..  ++.+   .++++++|+.++|..+|++..
T Consensus       256 ~~Q~~~gg~~~~Wg~Qhd~~tl~P~~aR~yE~~sls~~eS~~i~~~LM~~~~ps~~~~~aI~~av~Wl~~~~~~~~~~~~  335 (408)
T d1r76a_         256 ETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVAWLNTSVIRDRAWVK  335 (408)
T ss_dssp             HHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHSCCCC-----
T ss_pred             HHhcccCCCcChHhhccCccccCcccccccCChhhhhhhHHHHHHHHHhCCCCChhHHHHHHHHHHHHHhcccCCceeee
Confidence            999999997643211   1             112333344444555443  3332   578899999999999988864


Q ss_pred             C
Q psy15672        154 Y  154 (271)
Q Consensus       154 ~  154 (271)
                      .
T Consensus       336 ~  336 (408)
T d1r76a_         336 S  336 (408)
T ss_dssp             -
T ss_pred             c
Confidence            3

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Cellvibrio cellulosa [TaxId: 155077]

Probab=97.69  E-value=9.4e-06  Score=69.30  Aligned_cols=115  Identities=15%  Similarity=0.177  Sum_probs=70.2

Q ss_pred             HHHHHHHhhcCCCCCeecc--------cC-----CCCChhHHHHHHHHHHHhCc--CC---hhhHHHHHHHHHHcccCCC
Q psy15672         88 KLKQFLQRLKAPDGGFHVH--------DG-----GEVDIRGVYCALCVALLTQV--YS---EDLFNNTREWLTACQTYEG  149 (271)
Q Consensus        88 ~~~~~l~~~q~~dGgf~~~--------~~-----~e~d~~~ty~a~~~l~ll~~--~~---~~~~~~~~~~l~~~q~~dG  149 (271)
                      +..++|.+.|+++|||.-.        +.     +..|-..|..++..|..+..  .+   ...+.++++||++.|+++|
T Consensus        27 ~~Ad~ll~~Q~~~GGW~Kn~d~~~~~~~~~~~~~sTiDn~AT~~~i~~La~~~~~~~d~~~~~A~~Rgi~~LL~~Q~~nG  106 (324)
T d1gxma_          27 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG  106 (324)
T ss_dssp             GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             hhhHHHHhcCCCCCCCCccccccCCCCCccCCCCCcccChHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhccCCC
Confidence            5678899999999999621        11     11355567766655554421  11   2567889999999999999


Q ss_pred             CCCCC-CCC-CCchhhhhh---hhhHHHhhc-----cCC----c----------cCHHHHHHHHHhccCCCcCCcCCC
Q psy15672        150 GFSGY-PGF-EAHGGYTFC---GFAALCLLK-----SEH----L----------CDIKALLRWTTNRQMNFEGGFQGR  203 (271)
Q Consensus       150 GF~~~-p~~-es~~~~T~~---al~aL~llg-----~~~----~----------~~~~~~~~wl~~~Q~~~~GGf~gr  203 (271)
                      ||... |.. .-+...||-   -+..|.+|.     ...    .          .-+++.++||+..|.+ +||+-++
T Consensus       107 GWpqf~P~~~~y~~~ItFND~am~~vl~lL~~~a~~~~~~~~~~~~~~~r~r~~~A~~Rgi~~lL~~Q~~-~gg~~t~  183 (324)
T d1gxma_         107 ALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWK-QNGVLTV  183 (324)
T ss_dssp             CCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCE-ETTEECC
T ss_pred             CccccccCCCCcccccCCCcHHHHHHHHHhchhhccccchhHHHhhhhhhHhHHHHHHHHHHHHHHhhcc-cCCCCCh
Confidence            99864 322 223333442   112222221     100    0          1257899999999988 7886654

>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C3D, a C3 fragment and ligand for complement receptor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.0025  Score=52.67  Aligned_cols=67  Identities=12%  Similarity=0.022  Sum_probs=48.0

Q ss_pred             hHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhC---cCChhh-HHHHHHHHHHcccCCCCCC
Q psy15672         86 RPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQ---VYSEDL-FNNTREWLTACQTYEGGFS  152 (271)
Q Consensus        86 ~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~---~~~~~~-~~~~~~~l~~~q~~dGGF~  152 (271)
                      +++.+.-|.+.|++||||+..++.+++...|-.++..|....   ...+.. .+++..|+.+.|..+|-|.
T Consensus        56 i~~gi~rl~~~Q~~dGgf~~w~~~~~~~~lTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~  126 (294)
T d1c3da_          56 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQ  126 (294)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBC
T ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCCCcchHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhhhhcCCCcc
Confidence            345677788889999999998877888888888888777653   233333 4445556667787777665