Psyllid ID: psy15684

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------
Protein Sequence
MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSASLLILLPMWRCRMEE
Secondary Structure (PSIPRED)
ccccccccccccEEHHHHHHHHHccccccccccccccccccEEEEccEEEEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEHHHHHcccccccccccccccccccEEEcccEEEEEEcEEEcccccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mnsllngkdsrWLQLEVCREFQrnkcsrpdteckfahppanvevqngrvtacydsvhvptpsaslLILLPMWRCRMEE
Flexible Loop (DISEMBL)
mnsllngkdsrwlQLEVCREFQRNKCSRPDTECKfahppanvevqnGRVTACYDSVhvptpsasllillpMWRCRMEE
Low Complexity Region (SEG)
MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSASLLILLPMWRCRMEE
Disordered region (IsUnstruct)
**********RWLQLEVCREFQRNKCSR*DTECKFAHPPANVEVQNGRVTACYDSVHVPTPSASLLILLPMWRC****
Disordered Region (DISOPRED)
***********WLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSASLLILL**W******
Disordered Region (DISEMBL)
********DSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSASLLILLPMWRCRMEE
Disordered Region (DISPRO)
*******KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSASLLILLPMWRCRM**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSASLLILLPMWRCRMEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	78	2.2.26 [Sep-21-2011]
O16011	297	Protein muscleblind OS=Dr	no	N/A	0.717	0.188	0.946	2e-26
A8XND8	299	Muscleblind-like protein	N/A	N/A	0.717	0.187	0.714	2e-19
Q94250	324	Muscleblind-like protein	no	N/A	0.717	0.172	0.696	4e-19
Q9NR56	388	Muscleblind-like protein	no	N/A	0.602	0.121	0.693	3e-16
Q5ZKW9	369	Muscleblind-like protein	yes	N/A	0.602	0.127	0.693	3e-16
Q9JKP5	341	Muscleblind-like protein	no	N/A	0.602	0.137	0.693	4e-16
Q6Q2B2	351	Muscleblind-like protein	N/A	N/A	0.602	0.133	0.653	3e-15
Q56V19	323	Muscleblind-like protein	N/A	N/A	0.615	0.148	0.66	4e-15
Q5R4F5	373	Muscleblind-like protein	no	N/A	0.602	0.126	0.653	4e-15
Q5VZF2	373	Muscleblind-like protein	no	N/A	0.602	0.126	0.653	4e-15

>sp|O16011|MBL_DROME Protein muscleblind OS=Drosophila melanogaster GN=mbl PE=2 SV=2

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/56 (94%), Positives = 55/56 (98%)

Query: 1  MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
          MNSLLNGKDSRWLQLEVCREFQRNKCSR DTECKFAHPPANVEVQNG+VTACYDS+
Sbjct: 7  MNSLLNGKDSRWLQLEVCREFQRNKCSRQDTECKFAHPPANVEVQNGKVTACYDSI 62

Required for terminal differentiation of photoreceptor cells. Vital for embryonic development.
Drosophila melanogaster (taxid: 7227)

>sp|A8XND8|MBL_CAEBR Muscleblind-like protein OS=Caenorhabditis briggsae GN=mbl-1 PE=3 SV=2

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 40/56 (71%), Positives = 47/56 (83%)

Query: 1  MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
          M+ + N KDSRWLQ+EVCREF R +C+R D ECKFAHPP NV+VQ GRVTACYDS+
Sbjct: 27 MSQVFNVKDSRWLQVEVCREFLRGQCARSDQECKFAHPPPNVDVQQGRVTACYDSI 82

Binds to RNA with repeat sequences CUG and CCUG.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q94250|MBL_CAEEL Muscleblind-like protein OS=Caenorhabditis elegans GN=mbl-1 PE=1 SV=2

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 39/56 (69%), Positives = 47/56 (83%)

Query: 1  MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
          ++ + N KDSRWLQ+EVCREF R +C+R D ECKFAHPP NV+VQ GRVTACYDS+
Sbjct: 27 VSQVFNVKDSRWLQVEVCREFLRGQCARSDQECKFAHPPPNVDVQQGRVTACYDSI 82

Binds to RNA with repeat sequences 5'-CUG-3' and 5'-CCUG-3'.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9NR56|MBNL1_HUMAN Muscleblind-like protein 1 OS=Homo sapiens GN=MBNL1 PE=1 SV=2

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 42/49 (85%)

Query: 8  KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
          +D++WL LEVCREFQR  CSRPDTECKFAHP  + +V+NGRV AC+DS+
Sbjct: 9  RDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSL 57

Mediates pre-mRNA alternative splicing regulation. Acts either as activator or repressor of splicing on specific pre-mRNA targets. Inhibits cardiac troponin-T (TNNT2) pre-mRNA exon inclusion but induces insulin receptor (IR) pre-mRNA exon inclusion in muscle. Antagonizes the alternative splicing activity pattern of CELF proteins. Regulates the TNNT2 exon 5 skipping through competition with U2AF2. Inhibits the formation of the spliceosome A complex on intron 4 of TNNT2 pre-mRNA. Binds to the stem-loop structure within the polypyrimidine tract of TNNT2 intron 4 during spliceosome assembly. Binds to the 5'-YGCU(U/G)Y-3'consensus sequence. Binds to the IR RNA. Binds to expanded CUG repeat RNA, which folds into a hairpin structure containing GC base pairs and bulged, unpaired U residues.

Homo sapiens (taxid: 9606)

>sp|Q5ZKW9|MBNL1_CHICK Muscleblind-like protein 1 OS=Gallus gallus GN=MBNL1 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 42/49 (85%)

Query: 8  KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
          +D++WL LEVCREFQR  CSRPDTECKFAHP  + +V+NGRV AC+DS+
Sbjct: 9  RDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSL 57

Involved in pre-mRNA alternative splicing regulation. Binds to CUG triplet repeat in RNA.

Gallus gallus (taxid: 9031)

>sp|Q9JKP5|MBNL1_MOUSE Muscleblind-like protein 1 OS=Mus musculus GN=Mbnl1 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 42/49 (85%)

Query: 8  KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
          +D++WL LEVCREFQR  CSRPDTECKFAHP  + +V+NGRV AC+DS+
Sbjct: 9  RDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSL 57

Mediates pre-mRNA alternative splicing regulation. Acts either as activator or repressor of splicing on specific pre-mRNA targets. Inhibits cardiac troponin-T (TNNT2) pre-mRNA exon inclusion but induces insulin receptor (IR) pre-mRNA exon inclusion in muscle. Antagonizes the alternative splicing activity pattern of CELF proteins. Regulates the TNNT2 exon 5 skipping through competition with U2AF2. Inhibits the formation of the spliceosome A complex on intron 4 of TNNT2 pre-mRNA. Binds to the stem-loop structure within the polypyrimidine tract of TNNT2 intron 4 during spliceosome assembly. Binds to the 5'-YGCU(U/G)Y-3'consensus sequence. Binds to the IR RNA. Binds to CUG triplet repeat expansion in myotonic dystrophy muscle cells by sequestering the target RNAs.

Mus musculus (taxid: 10090)

>sp|Q6Q2B2|MBN2A_TAKRU Muscleblind-like protein 2a OS=Takifugu rubripes GN=mbnl2a PE=2 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 41/49 (83%)

Query: 8  KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
          +D++WL LEVCR+FQR  CSR D ECKFAHPP + +V+NGRV AC+DS+
Sbjct: 9  RDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSL 57

Involved in pre-mRNA alternative splicing regulation. RNA-binding protein that binds to 5'ACACCC-3' core sequence.

Takifugu rubripes (taxid: 31033)

>sp|Q56V19|MBNL3_TAKRU Muscleblind-like protein 3 OS=Takifugu rubripes GN=mbnl3 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 33/50 (66%), Positives = 40/50 (80%)

Query: 7  GKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
          G+D++WL LEVCREFQR  CSR D ECKFAHP  +  V+NGRV AC+DS+
Sbjct: 8  GRDTKWLTLEVCREFQRGTCSRSDAECKFAHPSRSCHVENGRVIACFDSL 57

Involved in pre-mRNA alternative splicing regulation. Could inhibit terminal muscle differentiation, acting at approximately the time of myogenin induction.

Takifugu rubripes (taxid: 31033)

>sp|Q5R4F5|MBNL2_PONAB Muscleblind-like protein 2 OS=Pongo abelii GN=MBNL2 PE=2 SV=2

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 41/49 (83%)

Query: 8  KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
          +D++WL LEVCR+FQR  CSR D ECKFAHPP + +V+NGRV AC+DS+
Sbjct: 9  RDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSL 57

Mediates pre-mRNA alternative splicing regulation. Acts either as activator or repressor of splicing on specific pre-mRNA targets. Inhibits cardiac troponin-T (TNNT2) pre-mRNA exon inclusion but induces insulin receptor (IR) pre-mRNA exon inclusion in muscle. Antagonizes the alternative splicing activity pattern of CELF proteins. RNA-binding protein that binds to 5'ACACCC-3' core sequence, termed zipcode, within the 3'UTR of ITGA3. Binds to CUG triplet repeat expansion in myotonic dystrophy muscle cells by sequestering the target RNAs. Seems to regulates expression and localization of ITGA3 by transporting it from the nucleus to cytoplasm at adhesion plaques. May play a role in myotonic dystrophy pathophysiology (DM).

Pongo abelii (taxid: 9601)

>sp|Q5VZF2|MBNL2_HUMAN Muscleblind-like protein 2 OS=Homo sapiens GN=MBNL2 PE=1 SV=2

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 41/49 (83%)

Query: 8  KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
          +D++WL LEVCR+FQR  CSR D ECKFAHPP + +V+NGRV AC+DS+
Sbjct: 9  RDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSL 57

Mediates pre-mRNA alternative splicing regulation. Acts either as activator or repressor of splicing on specific pre-mRNA targets. Inhibits cardiac troponin-T (TNNT2) pre-mRNA exon inclusion but induces insulin receptor (IR) pre-mRNA exon inclusion in muscle. Antagonizes the alternative splicing activity pattern of CELF proteins. RNA-binding protein that binds to 5'ACACCC-3' core sequence, termed zipcode, within the 3'UTR of ITGA3. Binds to CUG triplet repeat expansion in myotonic dystrophy muscle cells by sequestering the target RNAs. Seems to regulates expression and localization of ITGA3 by transporting it from the nucleus to cytoplasm at adhesion plaques. May play a role in myotonic dystrophy pathophysiology (DM).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
195123703	86	GI18619 [Drosophila mojavensis] gi|19391	0.897	0.813	0.819	3e-27
189237273	570	PREDICTED: similar to muscleblind CG3319	0.705	0.096	0.964	5e-27
270007552	534	hypothetical protein TcasGA2_TC014149 [T	0.705	0.102	0.964	6e-27
332021688	88	Protein muscleblind [Acromyrmex echinati	0.743	0.659	0.931	4e-26
442624017	925	muscleblind, isoform S [Drosophila melan	0.705	0.059	0.946	7e-26
397172474	924	muscleblind transcript variant B10 [Dros	0.705	0.059	0.946	7e-26
307193322	67	Protein muscleblind [Harpegnathos saltat	0.743	0.865	0.948	8e-26
442624015	956	muscleblind, isoform R [Drosophila melan	0.705	0.057	0.946	9e-26
2439998	84	Cys3His-type zinc finger protein [Drosop	0.910	0.845	0.788	9e-26
357626827	549	hypothetical protein KGM_12467 [Danaus p	0.705	0.100	0.964	1e-25

>gi|195123703|ref|XP_002006343.1| GI18619 [Drosophila mojavensis] gi|193911411|gb|EDW10278.1| GI18619 [Drosophila mojavensis]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/72 (81%), Positives = 64/72 (88%), Gaps = 2/72 (2%)

Query: 1  MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPT 60
          MNSLLNGKDSRWLQLEVCREFQRNKCSR DTECKFAHPPANVEVQNG+VTACYDS+ V  
Sbjct: 7  MNSLLNGKDSRWLQLEVCREFQRNKCSRQDTECKFAHPPANVEVQNGKVTACYDSIKVTA 66

Query: 61 PSAS--LLILLP 70
           S+   LL+L+P
Sbjct: 67 GSSDKLLLMLIP 78

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237273|ref|XP_001812946.1| PREDICTED: similar to muscleblind CG33197-PA [Tribolium castaneum]

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 54/56 (96%), Positives = 56/56 (100%)

Query: 1  MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
          MN+LLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDS+
Sbjct: 6  MNNLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSI 61

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007552|gb|EFA04000.1| hypothetical protein TcasGA2_TC014149 [Tribolium castaneum]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 54/56 (96%), Positives = 56/56 (100%)

Query: 1  MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
          MN+LLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDS+
Sbjct: 6  MNNLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSI 61

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021688|gb|EGI62044.1| Protein muscleblind [Acromyrmex echinatior]

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/58 (93%), Positives = 57/58 (98%)

Query: 1  MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHV 58
          MN+LLNGKDSRWLQLEVCREFQRNKC+RPDTECKFAHPPANVEVQNGRVTACYDS+ V
Sbjct: 6  MNNLLNGKDSRWLQLEVCREFQRNKCTRPDTECKFAHPPANVEVQNGRVTACYDSIKV 63

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442624017|ref|NP_001261047.1| muscleblind, isoform S [Drosophila melanogaster] gi|440214474|gb|AGB93579.1| muscleblind, isoform S [Drosophila melanogaster]

 Score =  120 bits (302), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 53/56 (94%), Positives = 55/56 (98%)

Query: 1  MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
          MNSLLNGKDSRWLQLEVCREFQRNKCSR DTECKFAHPPANVEVQNG+VTACYDS+
Sbjct: 7  MNSLLNGKDSRWLQLEVCREFQRNKCSRQDTECKFAHPPANVEVQNGKVTACYDSI 62

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|397172474|gb|AFO19991.1| muscleblind transcript variant B10 [Drosophila melanogaster]

 Score =  120 bits (302), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 53/56 (94%), Positives = 55/56 (98%)

Query: 1  MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
          MNSLLNGKDSRWLQLEVCREFQRNKCSR DTECKFAHPPANVEVQNG+VTACYDS+
Sbjct: 7  MNSLLNGKDSRWLQLEVCREFQRNKCSRQDTECKFAHPPANVEVQNGKVTACYDSI 62

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193322|gb|EFN76184.1| Protein muscleblind [Harpegnathos saltator]

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 55/58 (94%), Positives = 57/58 (98%)

Query: 1  MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHV 58
          MN+LLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDS+ V
Sbjct: 1  MNNLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSIKV 58

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442624015|ref|NP_001261046.1| muscleblind, isoform R [Drosophila melanogaster] gi|397172476|gb|AFO19992.1| muscleblind longest transcript variant [Drosophila melanogaster] gi|440214473|gb|AGB93578.1| muscleblind, isoform R [Drosophila melanogaster]

 Score =  120 bits (301), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 53/56 (94%), Positives = 55/56 (98%)

Query: 1  MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
          MNSLLNGKDSRWLQLEVCREFQRNKCSR DTECKFAHPPANVEVQNG+VTACYDS+
Sbjct: 7  MNSLLNGKDSRWLQLEVCREFQRNKCSRQDTECKFAHPPANVEVQNGKVTACYDSI 62

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|2439998|gb|AAC01948.1| Cys3His-type zinc finger protein [Drosophila melanogaster]

 Score =  120 bits (301), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 62/71 (87%)

Query: 1  MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPT 60
          MNSLLNGKD RWLQLEVCREFQRNKCSR DTECKFAHPPANVEVQNG+VTACYDS+ V T
Sbjct: 7  MNSLLNGKDWRWLQLEVCREFQRNKCSRQDTECKFAHPPANVEVQNGKVTACYDSIKVCT 66

Query: 61 PSASLLILLPM 71
           S  + ++L +
Sbjct: 67 VSLYIDLILNL 77

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357626827|gb|EHJ76751.1| hypothetical protein KGM_12467 [Danaus plexippus]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/56 (96%), Positives = 55/56 (98%)

Query: 1  MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
          MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPA VEVQNGRVTACYDS+
Sbjct: 4  MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPATVEVQNGRVTACYDSI 59

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
WB|WBGene00019347	324	mbl-1 [Caenorhabditis elegans	0.717	0.172	0.696	5.1e-19
UNIPROTKB|Q94250	324	mbl-1 "Muscleblind-like protei	0.717	0.172	0.696	5.1e-19
UNIPROTKB|H7C4T5	329	MBNL1 "Muscleblind-like protei	0.628	0.148	0.693	2.1e-16
UNIPROTKB|E2QSA8	341	MBNL1 "Uncharacterized protein	0.628	0.143	0.693	2.6e-16
MGI|MGI:1928482	341	Mbnl1 "muscleblind-like 1 (Dro	0.628	0.143	0.693	2.6e-16
UNIPROTKB|C9JP00	348	MBNL1 "Muscleblind-like protei	0.628	0.140	0.693	2.9e-16
UNIPROTKB|Q5ZKW9	369	MBNL1 "Muscleblind-like protei	0.628	0.132	0.693	3.8e-16
UNIPROTKB|G3X6F9	370	MBNL1 "Uncharacterized protein	0.628	0.132	0.693	3.8e-16
UNIPROTKB|E2QSC6	381	MBNL1 "Uncharacterized protein	0.628	0.128	0.693	4.3e-16
UNIPROTKB|F1NBC8	384	MBNL1 "Muscleblind-like protei	0.628	0.127	0.693	4.4e-16

WB|WBGene00019347 mbl-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 39/56 (69%), Positives = 47/56 (83%)

Query:     1 MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
             ++ + N KDSRWLQ+EVCREF R +C+R D ECKFAHPP NV+VQ GRVTACYDS+
Sbjct:    27 VSQVFNVKDSRWLQVEVCREFLRGQCARSDQECKFAHPPPNVDVQQGRVTACYDSI 82

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q94250 mbl-1 "Muscleblind-like protein" [Caenorhabditis elegans (taxid:6239)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 39/56 (69%), Positives = 47/56 (83%)

Query:     1 MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
             ++ + N KDSRWLQ+EVCREF R +C+R D ECKFAHPP NV+VQ GRVTACYDS+
Sbjct:    27 VSQVFNVKDSRWLQVEVCREFLRGQCARSDQECKFAHPPPNVDVQQGRVTACYDSI 82

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=ISS

UNIPROTKB|H7C4T5 MBNL1 "Muscleblind-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 205 (77.2 bits), Expect = 2.1e-16, P = 2.1e-16
 Identities = 34/49 (69%), Positives = 42/49 (85%)

Query:     8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
             +D++WL LEVCREFQR  CSRPDTECKFAHP  + +V+NGRV AC+DS+
Sbjct:     8 RDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSL 56

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2QSA8 MBNL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 205 (77.2 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 34/49 (69%), Positives = 42/49 (85%)

Query:     8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
             +D++WL LEVCREFQR  CSRPDTECKFAHP  + +V+NGRV AC+DS+
Sbjct:     9 RDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSL 57

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1928482 Mbnl1 "muscleblind-like 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 205 (77.2 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 34/49 (69%), Positives = 42/49 (85%)

Query:     8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
             +D++WL LEVCREFQR  CSRPDTECKFAHP  + +V+NGRV AC+DS+
Sbjct:     9 RDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSL 57

GO:0000380 "alternative mRNA splicing, via spliceosome" evidence=ISO;IMP

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISO

GO:0003725 "double-stranded RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0006376 "mRNA splice site selection" evidence=IMP

GO:0006397 "mRNA processing" evidence=IEA

GO:0007519 "skeletal muscle tissue development" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008380 "RNA splicing" evidence=ISO

GO:0010494 "cytoplasmic stress granule" evidence=ISO

GO:0043484 "regulation of RNA splicing" evidence=ISO

GO:0045445 "myoblast differentiation" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|C9JP00 MBNL1 "Muscleblind-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 205 (77.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 34/49 (69%), Positives = 42/49 (85%)

Query:     8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
             +D++WL LEVCREFQR  CSRPDTECKFAHP  + +V+NGRV AC+DS+
Sbjct:     9 RDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSL 57

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5ZKW9 MBNL1 "Muscleblind-like protein 1" [Gallus gallus (taxid:9031)]

 Score = 205 (77.2 bits), Expect = 3.8e-16, P = 3.8e-16
 Identities = 34/49 (69%), Positives = 42/49 (85%)

Query:     8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
             +D++WL LEVCREFQR  CSRPDTECKFAHP  + +V+NGRV AC+DS+
Sbjct:     9 RDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSL 57

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|G3X6F9 MBNL1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 205 (77.2 bits), Expect = 3.8e-16, P = 3.8e-16
 Identities = 34/49 (69%), Positives = 42/49 (85%)

Query:     8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
             +D++WL LEVCREFQR  CSRPDTECKFAHP  + +V+NGRV AC+DS+
Sbjct:     9 RDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSL 57

GO:0010494 "cytoplasmic stress granule" evidence=IEA

GO:0007519 "skeletal muscle tissue development" evidence=IEA

GO:0006376 "mRNA splice site selection" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IEA

GO:0000380 "alternative mRNA splicing, via spliceosome" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2QSC6 MBNL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 205 (77.2 bits), Expect = 4.3e-16, P = 4.3e-16
 Identities = 34/49 (69%), Positives = 42/49 (85%)

Query:     8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
             +D++WL LEVCREFQR  CSRPDTECKFAHP  + +V+NGRV AC+DS+
Sbjct:     9 RDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSL 57

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1NBC8 MBNL1 "Muscleblind-like protein 1" [Gallus gallus (taxid:9031)]

 Score = 205 (77.2 bits), Expect = 4.4e-16, P = 4.4e-16
 Identities = 34/49 (69%), Positives = 42/49 (85%)

Query:     8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
             +D++WL LEVCREFQR  CSRPDTECKFAHP  + +V+NGRV AC+DS+
Sbjct:    12 RDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSL 60

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000380 "alternative mRNA splicing, via spliceosome" evidence=IEA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006376 "mRNA splice site selection" evidence=IEA

GO:0007519 "skeletal muscle tissue development" evidence=IEA

GO:0010494 "cytoplasmic stress granule" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O16011	MBL_DROME	No assigned EC number	0.9464	0.7179	0.1885	no	N/A
Q5ZKW9	MBNL1_CHICK	No assigned EC number	0.6938	0.6025	0.1273	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	78
KOG2494|consensus	331		99.97
KOG2494|consensus	331		98.63
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	97.88
smart00356	27	ZnF_C3H1 zinc finger.	97.76
KOG1492|consensus	377		97.03
KOG1677|consensus	332		96.28
smart00356	27	ZnF_C3H1 zinc finger.	96.01
KOG1492|consensus	377		93.81
KOG1040|consensus	325		93.63
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	93.5
KOG1595|consensus	528		92.92
KOG1677|consensus	332		91.66
KOG1595|consensus	528		89.74
KOG1763|consensus	343		87.34
KOG4791|consensus	667		82.34

>KOG2494|consensus

Probab=99.97  E-value=1.3e-32  Score=214.20  Aligned_cols=68  Identities=56%  Similarity=0.936  Sum_probs=65.9

Q ss_pred             ccCCCCcchhhHHHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEeccCCCCCcccccccccc
Q psy15684          4 LLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSASLLILLPM   71 (78)
Q Consensus         4 ~~~~rd~r~l~leVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGrC~R~~cr~~h~~   71 (78)
                      .+++||++|+++|||||||||.|+|++.||||+||+.++.|+||+|++|+||+||||+|++|||+||.
T Consensus        26 ~~~~kd~~wl~~eVCReF~rn~C~R~d~~CkfaHP~~~~~V~~g~v~aC~Ds~kgrCsR~nCkylHpp   93 (331)
T KOG2494|consen   26 NENVKDTKWLTLEVCREFLRNTCSRGDRECKFAHPPKNCQVSNGRVIACFDSQKGRCSRENCKYLHPP   93 (331)
T ss_pred             hccccccchhHHHHHHHHHhccccCCCccccccCCCCCCCccCCeEEEEeccccCccCcccceecCCC
Confidence            36799999999999999999999999999999999999999999999999999999999999999995

>KOG2494|consensus

Probab=98.63  E-value=3.6e-09  Score=83.32  Aligned_cols=67  Identities=27%  Similarity=0.421  Sum_probs=60.2

Q ss_pred             cCCCCcchhhHHHhHHHHhCCCCCCCCCccccCCCCCc--eeeCCEEEEEEeccCCCCCccccccccccc
Q psy15684          5 LNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANV--EVQNGRVTACYDSVHVPTPSASLLILLPMW   72 (78)
Q Consensus         5 ~~~rd~r~l~leVCReF~Rg~C~R~~~~CRfaHP~~~v--~v~~~~v~vC~D~~kGrC~R~~cr~~h~~~   72 (78)
                      ...+-.|.+.+|+|++ ++|+|.|.+..|+|+||..++  .-+++.+++|+|+++|+|.+.+|+|+|+.+
T Consensus       186 ~~~k~~r~~~~e~~~~-~~gn~~r~e~d~~f~~~~k~~~~~s~~~t~~~~~~~t~~~~~~en~~~~~~~~  254 (331)
T KOG2494|consen  186 GGQKLLRSDRLEVCRE-QRGNCRRGEQDAQFAHPAKSIMIDSNDNTVEVCLRYTKGRCETENCKYFHAPA  254 (331)
T ss_pred             cccccccCCCCCCCcc-cccccccchhHHHHhhhhhhhhcccCCCcchhccccccceechhcccccCchH
Confidence            4456678889999999 999999999999999998764  457889999999999999999999999975

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.88  E-value=2.9e-06  Score=44.44  Aligned_cols=24  Identities=42%  Similarity=0.912  Sum_probs=18.3

Q ss_pred             HHHhHHHHh-CCCCCCCCCccccCCC
Q psy15684         15 LEVCREFQR-NKCSRPDTECKFAHPP   39 (78)
Q Consensus        15 leVCReF~R-g~C~R~~~~CRfaHP~   39 (78)
                      -++|+.|++ |.|.+|+ .|+|+|+.
T Consensus         3 ~~~C~~f~~~g~C~~G~-~C~f~H~~   27 (27)
T PF00642_consen    3 TKLCRFFMRTGTCPFGD-KCRFAHGE   27 (27)
T ss_dssp             SSB-HHHHHTS--TTGG-GSSSBSSG
T ss_pred             cccChhhccCCccCCCC-CcCccCCC
Confidence            358999999 9999996 99999984

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>smart00356 ZnF_C3H1 zinc finger

Probab=97.76  E-value=5.9e-06  Score=41.59  Aligned_cols=24  Identities=50%  Similarity=1.039  Sum_probs=20.9

Q ss_pred             HHHhHHHHhCCCCCCCCCccccCCC
Q psy15684         15 LEVCREFQRNKCSRPDTECKFAHPP   39 (78)
Q Consensus        15 leVCReF~Rg~C~R~~~~CRfaHP~   39 (78)
                      ..+|++|+.|.|.+|+ .|+|+|+.
T Consensus         4 ~~~C~~~~~g~C~~g~-~C~~~H~~   27 (27)
T smart00356        4 TELCKFFKRGYCPYGD-RCKFAHPL   27 (27)
T ss_pred             CCcCcCccCCCCCCCC-CcCCCCcC
Confidence            4589999999999997 99999974

>KOG1492|consensus

Probab=97.03  E-value=0.00026  Score=55.72  Aligned_cols=53  Identities=15%  Similarity=0.412  Sum_probs=45.7

Q ss_pred             HHHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEeccCCCCCcccccccccccc
Q psy15684         15 LEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSASLLILLPMWR   73 (78)
Q Consensus        15 leVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGrC~R~~cr~~h~~~~   73 (78)
                      -.||-.|+.|.|+..+ +|-.+|-.+     ..+..+|.=|+-|.|+.++|||.|-.|-
T Consensus       233 kticpkflngrcnkae-dcnlsheld-----prripacryfllgkcnnpncryvhihys  285 (377)
T KOG1492|consen  233 KTICPKFLNGRCNKAE-DCNLSHELD-----PRRIPACRYFLLGKCNNPNCRYVHIHYS  285 (377)
T ss_pred             cccChHHhcCccCchh-cCCcccccC-----ccccchhhhhhhccCCCCCceEEEEeec
Confidence            5688899999999987 899988754     3588899999999999999999998774

>KOG1677|consensus

Probab=96.28  E-value=0.0016  Score=48.56  Aligned_cols=65  Identities=15%  Similarity=0.309  Sum_probs=49.6

Q ss_pred             CCCcchhhHHHhHHHHh-CCCCC-CCCCccccCCCCCce-------ee---CCEEEEEEeccC-CCCCcc-ccccccccc
Q psy15684          7 GKDSRWLQLEVCREFQR-NKCSR-PDTECKFAHPPANVE-------VQ---NGRVTACYDSVH-VPTPSA-SLLILLPMW   72 (78)
Q Consensus         7 ~rd~r~l~leVCReF~R-g~C~R-~~~~CRfaHP~~~v~-------v~---~~~v~vC~D~~k-GrC~R~-~cr~~h~~~   72 (78)
                      .++....+.+.|+-|.+ |.|.. ++ .|||+|+.+...       +.   .-+-..|..|++ |-|--+ .|+|+|+.=
T Consensus       124 ~~~p~~~kt~lc~~~~~~g~c~y~ge-~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~  202 (332)
T KOG1677|consen  124 ERKPERYKTPLCRSFRKSGTCKYRGE-QCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEP  202 (332)
T ss_pred             ccCcccccCCcceeeecCccccccCc-hhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCc
Confidence            34555566788887764 78998 86 999999987644       11   226678999999 999996 999999853

>smart00356 ZnF_C3H1 zinc finger

Probab=96.01  E-value=0.0025  Score=31.76  Aligned_cols=22  Identities=14%  Similarity=0.013  Sum_probs=19.5

Q ss_pred             EEEEEeccCCCCCcc-ccccccc
Q psy15684         49 VTACYDSVHVPTPSA-SLLILLP   70 (78)
Q Consensus        49 v~vC~D~~kGrC~R~-~cr~~h~   70 (78)
                      ..+|.+|++|.|.++ +|+|.|.
T Consensus         4 ~~~C~~~~~g~C~~g~~C~~~H~   26 (27)
T smart00356        4 TELCKFFKRGYCPYGDRCKFAHP   26 (27)
T ss_pred             CCcCcCccCCCCCCCCCcCCCCc
Confidence            457999999999997 8999996

>KOG1492|consensus

Probab=93.81  E-value=0.026  Score=44.62  Aligned_cols=45  Identities=24%  Similarity=0.524  Sum_probs=36.0

Q ss_pred             hHHHH-hCCCCCCCCCccccCCCCCceeeCCEEEEEEeccCCCCCcc-ccccccc
Q psy15684         18 CREFQ-RNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSA-SLLILLP   70 (78)
Q Consensus        18 CReF~-Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGrC~R~-~cr~~h~   70 (78)
                      ||-|. .|.|-.|. .|||.|-|.       +.|+|--|++|||+.. .|-..|-
T Consensus       209 cryynangicgkga-acrfvhept-------rkticpkflngrcnkaedcnlshe  255 (377)
T KOG1492|consen  209 CRYYNANGICGKGA-ACRFVHEPT-------RKTICPKFLNGRCNKAEDCNLSHE  255 (377)
T ss_pred             EEEecCCCcccCCc-eeeeecccc-------ccccChHHhcCccCchhcCCcccc
Confidence            44443 47899996 999999887       7899999999999985 7776663

>KOG1040|consensus

Probab=93.63  E-value=0.029  Score=44.20  Aligned_cols=55  Identities=18%  Similarity=0.222  Sum_probs=44.8

Q ss_pred             hhhHHHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEeccCCCCCc-ccccccccc
Q psy15684         12 WLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPS-ASLLILLPM   71 (78)
Q Consensus        12 ~l~leVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGrC~R-~~cr~~h~~   71 (78)
                      -....||+.|++|.|+-++ +|=|+|--..+    -....++=++.|.|.+ ..|-|+|=+
T Consensus        74 ~~~~~vcK~~l~glC~kgD-~C~Flhe~~~~----k~rec~ff~~~g~c~~~~~c~y~h~d  129 (325)
T KOG1040|consen   74 SRGKVVCKHWLRGLCKKGD-QCEFLHEYDLT----KMRECKFFSLFGECTNGKDCPYLHGD  129 (325)
T ss_pred             cCCceeehhhhhhhhhccC-cCcchhhhhhc----ccccccccccccccccccCCcccCCC
Confidence            4457899999999999997 99999975431    2446778889999999 799999966

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=93.50  E-value=0.02  Score=28.02  Aligned_cols=12  Identities=50%  Similarity=1.384  Sum_probs=8.7

Q ss_pred             CCCCCCCccccCC
Q psy15684         26 CSRPDTECKFAHP   38 (78)
Q Consensus        26 C~R~~~~CRfaHP   38 (78)
                      |+.++ .|.|+||
T Consensus         8 C~~~~-~C~f~HP   19 (19)
T PF14608_consen    8 CTNGD-NCPFSHP   19 (19)
T ss_pred             CCCCC-cCccCCc
Confidence            77774 7777776

>KOG1595|consensus

Probab=92.92  E-value=0.032  Score=46.80  Aligned_cols=61  Identities=25%  Similarity=0.443  Sum_probs=41.4

Q ss_pred             CCcchh--hHHHhHHHHhCCCCCCCCCccccCCCCCc--eeeCCEEEEEEeccCCCCCcccccccccc
Q psy15684          8 KDSRWL--QLEVCREFQRNKCSRPDTECKFAHPPANV--EVQNGRVTACYDSVHVPTPSASLLILLPM   71 (78)
Q Consensus         8 rd~r~l--~leVCReF~Rg~C~R~~~~CRfaHP~~~v--~v~~~~v~vC~D~~kGrC~R~~cr~~h~~   71 (78)
                      ||+|=.  +-..|=||.+|.|.||| .|-|||-----  .=..=+-+.|-|-  |-|.|.-|-|-|..
T Consensus       227 RDPRkyhYs~tpCPefrkG~C~rGD-~CEyaHgvfEcwLHPa~YRT~~CkDg--~~C~RrvCfFAH~~  291 (528)
T KOG1595|consen  227 RDPRKYHYSSTPCPEFRKGSCERGD-SCEYAHGVFECWLHPARYRTRKCKDG--GYCPRRVCFFAHSP  291 (528)
T ss_pred             CCcccccccCccCcccccCCCCCCC-ccccccceehhhcCHHHhccccccCC--CCCccceEeeecCh
Confidence            444433  36778888899999997 89888752210  0012366777777  88888888888864

>KOG1677|consensus

Probab=91.66  E-value=0.058  Score=40.29  Aligned_cols=27  Identities=26%  Similarity=0.744  Sum_probs=23.6

Q ss_pred             hHHHhHHHHh-CCCCCCCCCccccCCCCC
Q psy15684         14 QLEVCREFQR-NKCSRPDTECKFAHPPAN   41 (78)
Q Consensus        14 ~leVCReF~R-g~C~R~~~~CRfaHP~~~   41 (78)
                      +-++|.-|++ |.|.-|. .|+|+||...
T Consensus       176 kt~lC~~f~~tG~C~yG~-rC~F~H~~~~  203 (332)
T KOG1677|consen  176 KTKLCPKFQKTGLCKYGS-RCRFIHGEPE  203 (332)
T ss_pred             CCcCCCccccCCCCCCCC-cCeecCCCcc
Confidence            3568999999 9999995 9999999774

>KOG1595|consensus

Probab=89.74  E-value=0.2  Score=42.20  Aligned_cols=54  Identities=30%  Similarity=0.551  Sum_probs=40.7

Q ss_pred             HHhCCCCCCC----CCccccCCCCCceeeCC-----EEEEEEeccCCCCCcc-cccccccccce
Q psy15684         21 FQRNKCSRPD----TECKFAHPPANVEVQNG-----RVTACYDSVHVPTPSA-SLLILLPMWRC   74 (78)
Q Consensus        21 F~Rg~C~R~~----~~CRfaHP~~~v~v~~~-----~v~vC~D~~kGrC~R~-~cr~~h~~~~~   74 (78)
                      |.--.|+|+.    ++|-|+||-+.-..+|=     +-|.|=+|.||.|.|+ +|-|-|--+-|
T Consensus       199 fKir~C~R~~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefrkG~C~rGD~CEyaHgvfEc  262 (528)
T KOG1595|consen  199 FKIRRCSRPRSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFRKGSCERGDSCEYAHGVFEC  262 (528)
T ss_pred             eeecccCCccCCCcccCCccCCCcccccCCcccccccCccCcccccCCCCCCCccccccceehh
Confidence            4445566653    58999999887444433     5789999999999996 99998865544

>KOG1763|consensus

Probab=87.34  E-value=0.39  Score=38.63  Aligned_cols=27  Identities=37%  Similarity=0.795  Sum_probs=23.8

Q ss_pred             hHHHhHHHHhCCCCCCCCCccccCCCCC
Q psy15684         14 QLEVCREFQRNKCSRPDTECKFAHPPAN   41 (78)
Q Consensus        14 ~leVCReF~Rg~C~R~~~~CRfaHP~~~   41 (78)
                      +-.||.-|.+|.|+-|+ -|+|+|-...
T Consensus        91 KSvvCafFk~g~C~KG~-kCKFsHdl~~  117 (343)
T KOG1763|consen   91 KSVVCAFFKQGTCTKGD-KCKFSHDLAV  117 (343)
T ss_pred             hHHHHHHHhccCCCCCC-cccccchHHH
Confidence            46799999999999996 9999998653

>KOG4791|consensus

Probab=82.34  E-value=0.66  Score=39.74  Aligned_cols=53  Identities=19%  Similarity=0.384  Sum_probs=37.9

Q ss_pred             HHHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEeccCCC-CCcccccccc--ccc
Q psy15684         15 LEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVP-TPSASLLILL--PMW   72 (78)
Q Consensus        15 leVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGr-C~R~~cr~~h--~~~   72 (78)
                      +-+|+-|+-+.|-+.  +|+|.|-.-...   .+-+-||=+.++. |+.+.|-|-|  |.|
T Consensus        32 ~t~C~~w~~~~~C~k--~C~YRHSe~~~k---r~e~~CYwe~~p~gC~k~~CgfRH~~pPL   87 (667)
T KOG4791|consen   32 ETVCTLWQEGRCCRK--VCRYRHSEIDKK---RSEIPCYWENQPTGCQKLNCGFRHNRPPL   87 (667)
T ss_pred             cchhhhhhhcCcccc--cccchhhHHhhh---cCcccceeecCCCccCCCccccccCCCch
Confidence            457888888877766  688888644322   3456788888887 8888888888  655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	78
3d2n_A	83	Crystal Structure Of Mbnl1 Tandem Zinc Finger 1 And		1e-16
2rpp_A	89	Solution Structure Of Tandem Zinc Finger Domain 12		7e-16
2e5s_A	98	Solution Structure Of The Zf-Ccchx2 Domain Of Muscl		2e-07
3d2q_A	70	Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And		1e-06

>pdb|3D2N|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 1 And 2 Domain Length = 83

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 8  KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
          +D++WL LEVCREFQR  CSRPDTECKFAHP  + +V+NGRV AC+DS+
Sbjct: 2  RDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSL 50

>pdb|2RPP|A Chain A, Solution Structure Of Tandem Zinc Finger Domain 12 In Muscleblind-Like Protein 2 Length = 89

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 41/49 (83%)
Query: 8  KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
          +D++WL LEVCR+FQR  CSR D ECKFAHPP + +V+NGRV AC+DS+
Sbjct: 10 RDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSL 58

>pdb|2E5S|A Chain A, Solution Structure Of The Zf-Ccchx2 Domain Of Muscleblind- Like 2, Isoform 1 [homo Sapiens] Length = 98

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 11 RWLQLEVCREFQRNKCSRPDTECKFAHPPAN--VEVQNGRVTACYDSV 56
          R  +LEVCREFQR  C+R +T+C+FAHP  +  ++  +  VT C D +
Sbjct: 16 RTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYI 63

>pdb|3D2Q|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4 Domain Length = 70

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 10 SRWLQLEVCREFQRNKCSRPDTECKFAHPPAN--VEVQNGRVTACYDSV 56
          SR  +LEVCRE+QR  C+R + +C+FAHP  +  ++  +  VT C D +
Sbjct: 1  SRTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYI 49

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	78
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	6e-22
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	2e-20
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	1e-15
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	3e-15

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Length = 83

 Score = 80.1 bits (197), Expect = 6e-22
 Identities = 34/49 (69%), Positives = 42/49 (85%)

Query: 8  KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
          +D++WL LEVCREFQR  CSRPDTECKFAHP  + +V+NGRV AC+DS+
Sbjct: 2  RDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSL 50

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Length = 89

 Score = 76.0 bits (186), Expect = 2e-20
 Identities = 33/56 (58%), Positives = 42/56 (75%)

Query: 1  MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
            S    +D++WL LEVCR+FQR  CSR D ECKFAHPP + +V+NGRV AC+DS+
Sbjct: 3  SGSSGPVRDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSL 58

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 64.5 bits (156), Expect = 1e-15
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 1  MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPAN--VEVQNGRVTACYDSVHV 58
            S    K  R  +LEVCREFQR  C+R +T+C+FAHP  +  ++  +  VT C D +  
Sbjct: 6  SGSTATQKLLRTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKG 65

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70

 Score = 62.4 bits (151), Expect = 3e-15
 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 10 SRWLQLEVCREFQRNKCSRPDTECKFAHPPAN--VEVQNGRVTACYDSV 56
          SR  +LEVCRE+QR  C+R + +C+FAHP  +  ++  +  VT C D +
Sbjct: 1  SRTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYI 49

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	78
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	99.96
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	99.95
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	99.89
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	99.87
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.35
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.23
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	98.69
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	98.56
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.06
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	97.91
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	97.9
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	97.79
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	97.68
2rhk_C	72	Cleavage and polyadenylation specificity factor su	96.48
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	96.34
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	96.2
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	96.02
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	94.32
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	91.63
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	89.39

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=99.96  E-value=2.3e-31  Score=172.97  Aligned_cols=69  Identities=51%  Similarity=0.919  Sum_probs=66.9

Q ss_pred             cccCCCCcchhhHHHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEeccCCCCCcccccccccc
Q psy15684          3 SLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSASLLILLPM   71 (78)
Q Consensus         3 ~~~~~rd~r~l~leVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGrC~R~~cr~~h~~   71 (78)
                      ++.++||++|++++|||||+||+|+|++++|||+||+++++++++++++|+||+||+|+|++|+|+||.
T Consensus         5 ~~~~~~~~~~~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~~~~~~vC~dflkG~C~r~~Cky~H~~   73 (89)
T 2rpp_A            5 SSGPVRDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSLKGRCSRENCKYLHPP   73 (89)
T ss_dssp             CCSCCCSCSSSEECBCHHHHHTCCCCCTTTSSSBCCCSSSCCBTTBEEBCHHHHHTCCCCTTCCSBCCC
T ss_pred             ccccccCCCcchhhhchHHhcCCCCCCCCCCCCcCCCccccccCCceeeehhhhhCcCCCCCcceecCH
Confidence            678899999999999999999999999999999999999999999999999999999999999999996

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=99.95  E-value=4.3e-30  Score=164.65  Aligned_cols=64  Identities=56%  Similarity=1.058  Sum_probs=60.8

Q ss_pred             CCcchhhHHHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEeccCCCCCcccccccccc
Q psy15684          8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSASLLILLPM   71 (78)
Q Consensus         8 rd~r~l~leVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGrC~R~~cr~~h~~   71 (78)
                      ||++|++++|||||+||.|+|++++|||+||++.+.++++++++|+||+||+|+|+.|+|+||.
T Consensus         2 ~~~~~~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~~~~~~~vC~dflkG~C~r~~C~y~H~~   65 (83)
T 3d2n_A            2 RDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRENCKYLHPP   65 (83)
T ss_dssp             --CGGGEEEBCTTGGGTCCCSCTTTCSSBCCCTTCCEETTEEECCHHHHTTCCCCSSCSSCCCC
T ss_pred             CCcccccchhcHHHhcCCCCCCCCCCCCcCCCccccccCCceeehhHhhhccccCCCcceeCCh
Confidence            8999999999999999999999999999999999999999999999999999999999999986

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=99.89  E-value=5e-25  Score=135.59  Aligned_cols=62  Identities=35%  Similarity=0.705  Sum_probs=54.9

Q ss_pred             cchhhHHHhHHHHhCCCCCCCCCccccCCCCCc--eeeCCEEEEEEeccCCCCCcccccccccc
Q psy15684         10 SRWLQLEVCREFQRNKCSRPDTECKFAHPPANV--EVQNGRVTACYDSVHVPTPSASLLILLPM   71 (78)
Q Consensus        10 ~r~l~leVCReF~Rg~C~R~~~~CRfaHP~~~v--~v~~~~v~vC~D~~kGrC~R~~cr~~h~~   71 (78)
                      ++|++++||++|++|.|+||+++|+|+||++.+  ++.++++++|+||+||+|+|+.|+|+|+.
T Consensus         1 ~r~~k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~   64 (70)
T 3d2q_A            1 SRTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP   64 (70)
T ss_dssp             ---CEEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCTTCCSBCCC
T ss_pred             CCcccchhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCCCcCeeCCH
Confidence            589999999999999999998889999998764  45688999999999999999999999985

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=4.2e-24  Score=139.88  Aligned_cols=69  Identities=36%  Similarity=0.586  Sum_probs=62.8

Q ss_pred             cccCCCCcchhhHHHhHHHHhCCCCCCCCCccccCCCCCce--eeCCEEEEEEeccCCCCCcccccccccc
Q psy15684          3 SLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVE--VQNGRVTACYDSVHVPTPSASLLILLPM   71 (78)
Q Consensus         3 ~~~~~rd~r~l~leVCReF~Rg~C~R~~~~CRfaHP~~~v~--v~~~~v~vC~D~~kGrC~R~~cr~~h~~   71 (78)
                      ++.+.|-.++++++|||+|+||.|+|++++|+|+||++.+.  +.++++++|+||+||+|.|+.|+|+|+.
T Consensus         8 ~~~~~K~~~~~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~   78 (98)
T 2e5s_A            8 STATQKLLRTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPP   78 (98)
T ss_dssp             SSCCCCCCCSSEEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCTTCCSBCCC
T ss_pred             ccccccccChhhhhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCCCcCccCCh
Confidence            56778889999999999999999999987899999988643  4578999999999999999999999986

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.35  E-value=3.9e-14  Score=87.75  Aligned_cols=59  Identities=19%  Similarity=0.304  Sum_probs=52.1

Q ss_pred             CCcchhhHHHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEeccC-CCCCccccccccccc
Q psy15684          8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVH-VPTPSASLLILLPMW   72 (78)
Q Consensus         8 rd~r~l~leVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~k-GrC~R~~cr~~h~~~   72 (78)
                      -|+.|.+.+||+.|++|.|++|+ .|+|+|+.+.     .+..+|..|++ |.|.++.|+|.|+.-
T Consensus         9 ~~~~~~k~~vCk~fl~G~C~~G~-~C~fsH~~~~-----~~~~~C~~f~~~G~C~~~~C~y~H~~p   68 (72)
T 2rhk_C            9 SHMSGEKTVVCKHWLRGLCKKGD-QCEFLHEYDM-----TKMSECYFYSKFGECSNKECPFLHIDP   68 (72)
T ss_dssp             CSSSCCCCSBCHHHHTTCCCCGG-GSSSBCSCCT-----TSCCBCHHHHHHSCCSBTTCCSBCCCC
T ss_pred             ccCCCCcCeeCHHHhcCCCCCCC-CCCCcccccc-----ccCCcccccCCCCCCCCCCeeccCCCc
Confidence            47788889999999999999997 6999999753     35678999999 999999999999754

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=6.2e-13  Score=82.48  Aligned_cols=57  Identities=21%  Similarity=0.325  Sum_probs=49.6

Q ss_pred             cchhhHHHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEeccC-CCCCccccccccccc
Q psy15684         10 SRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVH-VPTPSASLLILLPMW   72 (78)
Q Consensus        10 ~r~l~leVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~k-GrC~R~~cr~~h~~~   72 (78)
                      .+|.+.+||+.|++|.|.+|+ .|+|+|+...     .+..+|..|++ |.|..+.|+|.|..-
T Consensus         5 ~~~~k~~~C~~fl~G~C~~G~-~C~fsH~~~~-----~~~~~C~~f~~~G~C~~~~C~f~H~~~   62 (77)
T 2d9n_A            5 SSGEKTVVCKHWLRGLCKKGD-QCEFLHEYDM-----TKMPECYFYSKFGECSNKECPFLHIDP   62 (77)
T ss_dssp             CSCCTTSBCHHHHTTCCSCTT-SSSSBCSCCT-----TTSCBCHHHHHTCCCCCSSCSSBCCCT
T ss_pred             CCCCcceeCHhHccCcCCCCC-CCCCcccccc-----CcCCCCcccCCCCccCCCCeeccCCCc
Confidence            567788999999999999997 9999999764     24558999999 999999999999753

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=98.69  E-value=8.6e-10  Score=71.47  Aligned_cols=48  Identities=15%  Similarity=0.284  Sum_probs=42.6

Q ss_pred             hHHHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEecc-CCCCCc-cccccccccc
Q psy15684         14 QLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV-HVPTPS-ASLLILLPMW   72 (78)
Q Consensus        14 ~leVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~-kGrC~R-~~cr~~h~~~   72 (78)
                      +.++|+.|++|.|++|+ .|+|+|+          ..+|..|+ +|.|.. ..|+|.|+..
T Consensus        12 k~~lC~~f~~G~C~~G~-~C~f~H~----------~~~C~~f~~~G~C~~G~~C~f~H~~~   61 (98)
T 2cqe_A           12 KRELCKFYITGFCARAE-NCPYMHG----------DFPCKLYHTTGNCINGDDCMFSHDPL   61 (98)
T ss_dssp             CCSBCTTTTTTCCSCST-TCSSBSS----------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             CCccCcccccCcCCCCC-CCCCCCC----------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence            46799999999999996 9999999          45699994 999999 6999999865

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=98.56  E-value=7.1e-09  Score=62.58  Aligned_cols=58  Identities=17%  Similarity=0.382  Sum_probs=24.7

Q ss_pred             hhHHHhHHHH-hCCCCCCCCCccccCCCCCcee----eCCEEEEEEecc-CCCCCcc-cccccccc
Q psy15684         13 LQLEVCREFQ-RNKCSRPDTECKFAHPPANVEV----QNGRVTACYDSV-HVPTPSA-SLLILLPM   71 (78)
Q Consensus        13 l~leVCReF~-Rg~C~R~~~~CRfaHP~~~v~v----~~~~v~vC~D~~-kGrC~R~-~cr~~h~~   71 (78)
                      .+.++|+.|+ .|.|..|+ .|+|+|+.+....    ..-+..+|.+|. .|.|.++ .|+|.|+.
T Consensus        10 ~kt~~C~~f~~~G~C~~G~-~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~   74 (77)
T 1m9o_A           10 YKTELCRTYSESGRCRYGA-KCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNP   74 (77)
T ss_dssp             CCSCCCSGGGGTSCCTTTT-TCSSCSSSCCGGGTC-------------------------------
T ss_pred             ccchhCHHhhhCCCcCCCC-CccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCC
Confidence            3568999995 89999996 9999999764321    122457898876 8999985 99999974

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.06  E-value=3.9e-07  Score=55.35  Aligned_cols=28  Identities=39%  Similarity=1.032  Sum_probs=25.0

Q ss_pred             hhHHHhHHHHhCCCCCCCCCccccCCCCCc
Q psy15684         13 LQLEVCREFQRNKCSRPDTECKFAHPPANV   42 (78)
Q Consensus        13 l~leVCReF~Rg~C~R~~~~CRfaHP~~~v   42 (78)
                      .+.+||.+|++|.|+|+  .|+|+|+++++
T Consensus        40 ~~~~vC~~flkG~C~r~--~C~y~H~~~~L   67 (70)
T 3d2q_A           40 NTVTVCMDYIKGRCSRE--KCKYFHPPAHL   67 (70)
T ss_dssp             TEEEBCHHHHTTCCCCT--TCCSBCCCHHH
T ss_pred             CcceeccccCcCCCCCC--CcCeeCCHHHH
Confidence            35789999999999999  79999998764

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=97.91  E-value=1.7e-06  Score=55.76  Aligned_cols=29  Identities=31%  Similarity=0.879  Sum_probs=26.0

Q ss_pred             hHHHhHHHHhCCCCCCCCCccccCCCCCcee
Q psy15684         14 QLEVCREFQRNKCSRPDTECKFAHPPANVEV   44 (78)
Q Consensus        14 ~leVCReF~Rg~C~R~~~~CRfaHP~~~v~v   44 (78)
                      ++.||.+|++|.|+|+  .|||.||+.+++.
T Consensus        50 ~~~vC~dflkG~C~r~--~Cky~H~~~hl~~   78 (89)
T 2rpp_A           50 RVIACFDSLKGRCSRE--NCKYLHPPTHLKT   78 (89)
T ss_dssp             BEEBCHHHHHTCCCCT--TCCSBCCCHHHHH
T ss_pred             ceeeehhhhhCcCCCC--CcceecCHHHHHH
Confidence            5889999999999999  7999999998653

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=97.90  E-value=2.4e-06  Score=54.19  Aligned_cols=25  Identities=8%  Similarity=0.060  Sum_probs=23.4

Q ss_pred             EEEEEEeccCCCCCcc--ccccccccc
Q psy15684         48 RVTACYDSVHVPTPSA--SLLILLPMW   72 (78)
Q Consensus        48 ~v~vC~D~~kGrC~R~--~cr~~h~~~   72 (78)
                      ++.||.||++|+|+|+  .|+|.||.-
T Consensus         8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~   34 (83)
T 3d2n_A            8 TLEVCREFQRGTCSRPDTECKFAHPSK   34 (83)
T ss_dssp             EEEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred             cchhcHHHhcCCCCCCCCCCCCcCCCc
Confidence            7899999999999998  999999963

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.79  E-value=3.5e-06  Score=54.65  Aligned_cols=28  Identities=36%  Similarity=0.990  Sum_probs=25.2

Q ss_pred             hhHHHhHHHHhCCCCCCCCCccccCCCCCc
Q psy15684         13 LQLEVCREFQRNKCSRPDTECKFAHPPANV   42 (78)
Q Consensus        13 l~leVCReF~Rg~C~R~~~~CRfaHP~~~v   42 (78)
                      .+..||++|++|.|+|+  .|||+||+.++
T Consensus        54 ~~~~vC~~flkG~C~r~--~C~y~H~~~~l   81 (98)
T 2e5s_A           54 NTVTVCMDYIKGRCMRE--KCKYFHPPAHL   81 (98)
T ss_dssp             CEEEBCHHHHHTCCCCT--TCCSBCCCHHH
T ss_pred             CccccchhhccCCCCCC--CcCccCChHHH
Confidence            46789999999999999  79999999864

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.68  E-value=3.9e-06  Score=51.63  Aligned_cols=39  Identities=23%  Similarity=0.520  Sum_probs=31.3

Q ss_pred             hHHHhHHHHh-CCCCCCCCCccccCCCCCceeeCCEEEEEEeccCCC
Q psy15684         14 QLEVCREFQR-NKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVP   59 (78)
Q Consensus        14 ~leVCReF~R-g~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGr   59 (78)
                      +..+|+.|++ |.|. + .+|+|+|+.+.     .+...|.+|++|.
T Consensus        37 ~~~~C~~f~~~G~C~-~-~~C~f~H~~~~-----~~~~~C~~f~~g~   76 (77)
T 2d9n_A           37 KMPECYFYSKFGECS-N-KECPFLHIDPE-----SKIKDCPWSGPSS   76 (77)
T ss_dssp             TSCBCHHHHHTCCCC-C-SSCSSBCCCTT-----SSCSSSSCCTTTC
T ss_pred             cCCCCcccCCCCccC-C-CCeeccCCCcc-----ccCCCCcccccCC
Confidence            4568999999 9999 5 39999998763     3566888888874

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=96.48  E-value=0.0011  Score=40.47  Aligned_cols=26  Identities=27%  Similarity=0.727  Sum_probs=22.5

Q ss_pred             hHHHhHHHHh-CCCCCCCCCccccCCCCC
Q psy15684         14 QLEVCREFQR-NKCSRPDTECKFAHPPAN   41 (78)
Q Consensus        14 ~leVCReF~R-g~C~R~~~~CRfaHP~~~   41 (78)
                      +.++|+.|++ |.|++ + +|+|+|+.+.
T Consensus        43 ~~~~C~~f~~~G~C~~-~-~C~y~H~~p~   69 (72)
T 2rhk_C           43 KMSECYFYSKFGECSN-K-ECPFLHIDPE   69 (72)
T ss_dssp             SCCBCHHHHHHSCCSB-T-TCCSBCCCCC
T ss_pred             cCCcccccCCCCCCCC-C-CeeccCCCcc
Confidence            4568999999 99999 3 8999998765

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=96.34  E-value=0.0006  Score=40.63  Aligned_cols=25  Identities=32%  Similarity=0.953  Sum_probs=0.0

Q ss_pred             HHHhHHHH-hCCCCCCCCCccccCCCC
Q psy15684         15 LEVCREFQ-RNKCSRPDTECKFAHPPA   40 (78)
Q Consensus        15 leVCReF~-Rg~C~R~~~~CRfaHP~~   40 (78)
                      ..+|+.|. .|.|.+|+ .|+|+|+.+
T Consensus        50 ~~~C~~f~~~G~C~~G~-~C~f~H~~~   75 (77)
T 1m9o_A           50 TELCHKFKLQGRCPYGS-RCHFIHNPT   75 (77)
T ss_dssp             ---------------------------
T ss_pred             CCcccchhhCcCCCCcC-cCCCCCCCC
Confidence            57999886 89999996 999999864

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=96.20  E-value=0.0016  Score=41.82  Aligned_cols=26  Identities=27%  Similarity=0.692  Sum_probs=22.4

Q ss_pred             HHHhHHH-HhCCCCCCCCCccccCCCCC
Q psy15684         15 LEVCREF-QRNKCSRPDTECKFAHPPAN   41 (78)
Q Consensus        15 leVCReF-~Rg~C~R~~~~CRfaHP~~~   41 (78)
                      ..+|+.| ++|.|..|+ .|+|+|++..
T Consensus        36 ~~~C~~f~~~G~C~~G~-~C~f~H~~~~   62 (98)
T 2cqe_A           36 DFPCKLYHTTGNCINGD-DCMFSHDPLT   62 (98)
T ss_dssp             SSBCSHHHHTSCCSSCT-TCSSBCCCCC
T ss_pred             CCcCcCcccCCcCCCCC-CCcccCCCCc
Confidence            3579999 599999996 9999999764

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.02  E-value=0.0018  Score=40.44  Aligned_cols=25  Identities=32%  Similarity=0.865  Sum_probs=22.3

Q ss_pred             HHHhHHHHhCCCCCCCCCccccCCCC
Q psy15684         15 LEVCREFQRNKCSRPDTECKFAHPPA   40 (78)
Q Consensus        15 leVCReF~Rg~C~R~~~~CRfaHP~~   40 (78)
                      -++|+.|+.|.|..|+ .|.|||-.+
T Consensus        20 ~~LC~~~~~G~C~~G~-~C~FAHG~~   44 (69)
T 2d9m_A           20 FSICDRYMNGTCPEGN-SCKFAHGNA   44 (69)
T ss_dssp             CSBCHHHHHSCCSSCS-SCSSBSSHH
T ss_pred             cccCcccCcCCCCCCC-ccCCcCCHH
Confidence            3899999999999996 999999754

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=94.32  E-value=0.0029  Score=40.17  Aligned_cols=23  Identities=30%  Similarity=0.736  Sum_probs=16.0

Q ss_pred             hHHHhHHHHhCCCCCCCCCccccCCCC
Q psy15684         14 QLEVCREFQRNKCSRPDTECKFAHPPA   40 (78)
Q Consensus        14 ~leVCReF~Rg~C~R~~~~CRfaHP~~   40 (78)
                      .+|.|+-+.  .|++.  +|.|+||.+
T Consensus         8 ~~e~CKf~~--~Ctn~--~C~f~Hp~~   30 (80)
T 2lhn_A            8 SLEQCKFGT--HCTNK--RCKYRHARS   30 (80)
Confidence            467776555  67774  688888765

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=91.63  E-value=0.024  Score=35.91  Aligned_cols=43  Identities=33%  Similarity=0.539  Sum_probs=31.3

Q ss_pred             HHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEeccCCCCCcccccccccccc
Q psy15684         16 EVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSASLLILLPMWR   73 (78)
Q Consensus        16 eVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGrC~R~~cr~~h~~~~   73 (78)
                      ..||.+.  .|++.  +|.|+||+.         +.|. | --.|.+.+|.|.||.=|
T Consensus        32 ~~Cr~g~--~C~~~--~C~f~HP~~---------~~Cr-f-~~~C~n~~C~F~Hp~g~   74 (80)
T 2lhn_A           32 IMCREGA--NCTRI--DCLFGHPIN---------EDCR-F-GVNCKNIYCLFRHPPGR   74 (80)
Confidence            4788774  89996  799999942         3351 1 12799999999999643

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=89.39  E-value=0.12  Score=37.50  Aligned_cols=26  Identities=23%  Similarity=0.562  Sum_probs=22.5

Q ss_pred             HHHhHHHHhCCCCCCCCCccccCCCCC
Q psy15684         15 LEVCREFQRNKCSRPDTECKFAHPPAN   41 (78)
Q Consensus        15 leVCReF~Rg~C~R~~~~CRfaHP~~~   41 (78)
                      ..+|--|-||.|.||+ +|.|.|-.+.
T Consensus        70 ~~~C~ffakG~C~~G~-~C~y~H~lPt   95 (240)
T 3u1l_A           70 LFFCLFFAKGMCCLGP-KCEYLHHIPD   95 (240)
T ss_dssp             CSBCHHHHTTCCSCGG-GCSSBBSCCC
T ss_pred             CeEcCccccCCCCCCC-CCCccCCCCC
Confidence            4599999999999996 9999997554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	78
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	96.56
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	95.96
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	95.95
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	94.3

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00016  Score=38.53  Aligned_cols=25  Identities=36%  Similarity=0.841  Sum_probs=21.3

Q ss_pred             HHHhHHHH-hCCCCCCCCCccccCCCC
Q psy15684         15 LEVCREFQ-RNKCSRPDTECKFAHPPA   40 (78)
Q Consensus        15 leVCReF~-Rg~C~R~~~~CRfaHP~~   40 (78)
                      -++|+.|. .|.|..|+ .|.|||..+
T Consensus         6 T~lC~~~~~~g~C~~G~-~C~FAHg~~   31 (36)
T d1rgoa1           6 TELCRPFEESGTCKYGE-KCQFAHGFH   31 (36)
T ss_dssp             SSBCHHHHHHSCCTTGG-GCSSBSSGG
T ss_pred             hhhCcchhcCCcCCCCC-cCCCcCCHH
Confidence            46899997 49999996 999999865

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.00088  Score=36.21  Aligned_cols=28  Identities=29%  Similarity=0.776  Sum_probs=22.8

Q ss_pred             hhHHHhHHHHh-CCCCCCCCCccccCCCCC
Q psy15684         13 LQLEVCREFQR-NKCSRPDTECKFAHPPAN   41 (78)
Q Consensus        13 l~leVCReF~R-g~C~R~~~~CRfaHP~~~   41 (78)
                      .+-++|+.|++ |.|..|+ .|.|||-.+-
T Consensus         7 yKT~lC~~~~~~g~C~~G~-~C~FAHg~~E   35 (40)
T d1m9oa_           7 YKTELCRTYSESGRCRYGA-KCQFAHGLGE   35 (40)
T ss_dssp             CCSCCCSGGGGTSCCTTTT-TCSSCSSSCC
T ss_pred             cccccChhhhcCCcCCCCC-CCCCCCCHHH
Confidence            34578999975 8999996 9999997653

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.00078  Score=35.50  Aligned_cols=26  Identities=31%  Similarity=0.749  Sum_probs=22.3

Q ss_pred             hHHHhHHHHh-CCCCCCCCCccccCCCC
Q psy15684         14 QLEVCREFQR-NKCSRPDTECKFAHPPA   40 (78)
Q Consensus        14 ~leVCReF~R-g~C~R~~~~CRfaHP~~   40 (78)
                      +-++|+.|.. |.|.-|+ .|.|||-.+
T Consensus         7 KT~lC~~f~~~g~C~yG~-~C~FaHg~~   33 (34)
T d1rgoa2           7 KTELCRTFHTIGFCPYGP-RCHFIHNAD   33 (34)
T ss_dssp             TCSBCHHHHHHSCCTTGG-GCSSBCCSC
T ss_pred             cchhccccCCCCcCCCCC-cccCcCCCC
Confidence            5678999976 9999996 999999754

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.0026  Score=32.91  Aligned_cols=23  Identities=26%  Similarity=0.790  Sum_probs=19.4

Q ss_pred             HHHhHHHHhCCCCCCCCCccccCC
Q psy15684         15 LEVCREFQRNKCSRPDTECKFAHP   38 (78)
Q Consensus        15 leVCReF~Rg~C~R~~~~CRfaHP   38 (78)
                      -|+|.-|.+|-|+|++ .|.|.|.
T Consensus         6 kelCKfYvqGyCtrge-nC~ymH~   28 (29)
T d2cqea2           6 RELCKFYITGFCARAE-NCPYMHG   28 (29)
T ss_dssp             CSBCTTTTTTCCSCST-TCSSBSS
T ss_pred             hhhhhhheeeeecCCc-CcccccC
Confidence            3678889999999997 8999885