Psyllid ID: psy15691

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620
Protein Sequence
MNDDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVQTLEHEWHQLEDDKKIYQCWPVHFSSVDFVIEPKGTYGRRITEILTMQ
Secondary Structure (PSIPRED)
ccccccHHcccccccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccEEEEccccccccHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHHccccccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHccHHHHHHHHHHHccccccccHHcHHHHHHHHHHHHHHccccccccccEEEccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHEccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHccccEEccEEEEEccccccccHHHHHHccc
Coil and Loop (DISEMBL)
mnddyddeqthrwdqdmvdvdsdggddpmenpQEVLNECLekfstpdyimepgiFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMIlktfdpkkadtifteegetpaWLTEMIEHPTWRSLIYRLAeeypdclmLNFTIKLisdagfqreITSISTAAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQEITKCAqqsghdvtPIIMAlngaafypqANQALSSMisrnslnpadITVLFRlysspdpppidliriPQFLELLTdslfkpgvklnpehkpkYIYLLAYASSVYevstgkktkqksfnkdDLKTTIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVectvtepsyfklctehtpthLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCwqrgdtdiSLIRYFVTEVleaitppytpefVQLFLpivendeitgtmrgdgendpvSEFIVQTLEHEWHqleddkkiyqcwpvhfssvdfviepkgtygrRITEILTMQ
Flexible Loop (DISEMBL)
mnddyddeqthrwdqdmvDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTgkktkqksfnkddLKTTIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVQTLEHEWHQLEDDKKIYQCWPVHFssvdfviepkgtygrRITEILTMQ
Low Complexity Region (SEG)
MNDDYDDEQTHRWdqdmvdvdsdggddPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTyvysqvllqvlslESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSpdpppidliripQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVQTLEHEWHQLEDDKKIYQCWPVHFSSVDFVIEPKGTYGRRITEILTMQ
Disordered region (IsUnstruct)
************************************NECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVS***************KTTIQAIEKVHSICNS***SNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMR*****DPVSEFIVQTLEHEWHQLEDDKKIYQCWPVHFSSVDFVIEPKGTYGRRITEIL***
Disordered Region (DISOPRED)
*****DD*******************************CLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQEITK*A****HDVTPIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVST***********DDLKTTIQAIEKVHSICN**********EITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDE*****QLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVEND*************PVSEFIVQTLEHEWHQLEDDKKIYQCWPVHFSSVDFVIEPKGTYGRRITEILTMQ
Disordered Region (DISEMBL)
**********HRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEV*************DDLKTTIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVQTLEHEWHQLEDDKKIYQCWPVHFSSVDFVIEPKGTYGRRITEILTMQ
Disordered Region (DISPRO)
*****************************ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVQTLEHEWHQLEDDKKIYQCWPVHFSSVDFVIEPKGTYGRRITEILTMQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNDDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVQTLEHEWHQLEDDKKIYQCWPVHFSSVDFVIEPKGTYGRRITEILTMQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	620	2.2.26 [Sep-21-2011]
Q24134	578	Negative elongation facto	yes	N/A	0.896	0.961	0.734	0.0
Q922L6	591	Negative elongation facto	yes	N/A	0.911	0.956	0.590	0.0
Q8IXH7	590	Negative elongation facto	yes	N/A	0.917	0.964	0.588	0.0
Q5RFA0	590	Negative elongation facto	yes	N/A	0.917	0.964	0.588	0.0
A5GFY4	590	Negative elongation facto	yes	N/A	0.911	0.957	0.586	0.0

>sp|Q24134|NELFD_DROME Negative elongation factor D OS=Drosophila melanogaster GN=TH1 PE=1 SV=2

 Score =  855 bits (2210), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/561 (73%), Positives = 475/561 (84%), Gaps = 5/561 (0%)

Query: 22  SDGGDDPME----NPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQ 77
           + G  +P E    NPQ+ + ECLEKF TPDYIMEPGIF+QLKRYFQ+GG+PE+VI +LS+
Sbjct: 14  AKGQTNPEETLEDNPQKTIQECLEKFLTPDYIMEPGIFTQLKRYFQSGGSPEEVISMLSE 73

Query: 78  NYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAW 137
           NYKAVAQMANL+AEWLIL GV VTEVQAMVENHLK+MILK+FDPKKADTIFTEEGETP W
Sbjct: 74  NYKAVAQMANLLAEWLILAGVKVTEVQAMVENHLKEMILKSFDPKKADTIFTEEGETPDW 133

Query: 138 LTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVL 197
           LTEMI+H TWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQ EITSISTAAQQIEVFSRVL
Sbjct: 134 LTEMIDHYTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQSEITSISTAAQQIEVFSRVL 193

Query: 198 KTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQEIT 257
           KTSI  FL + DD   +++ECA+MVCHGQHTYVYSQVL+QVLS E KGG  +KRL+QEI 
Sbjct: 194 KTSIVKFLNNPDDVHGAIQECARMVCHGQHTYVYSQVLIQVLSQEQKGGFNMKRLSQEII 253

Query: 258 KCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSPDPPPID 317
           K A Q+  +VTPI MALNG+A YPQA QAL+SM++RN+LNPADITVLFR YS  DPPPID
Sbjct: 254 KYALQNNQNVTPITMALNGSAVYPQACQALTSMLTRNTLNPADITVLFRNYSGSDPPPID 313

Query: 318 LIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKK-TKQKSFNKDDL 376
           LIR PQFLELL D+LF+ GVK+NPEHKPKY++LLAYAS+V +    K+   ++  NK++L
Sbjct: 314 LIRNPQFLELLVDALFRSGVKINPEHKPKYMFLLAYASAVIDQPAKKRPMTERMLNKEEL 373

Query: 377 KTTIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLC 436
           K+TIQAIEK H+ICN  + S ELIAE+ TL++CI+YPVV VGVIRW+E  V EPSYFKL 
Sbjct: 374 KSTIQAIEKAHTICNVDQGSTELIAELQTLYNCIKYPVVGVGVIRWIENVVMEPSYFKLS 433

Query: 437 TEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLL 496
           T+  PTHLA+LDEV   H  L  ++L L I LFESKQDELEILVQLEM+KM+LDRMVNLL
Sbjct: 434 TDSCPTHLAVLDEVAAVHPTLQQQILFLLIRLFESKQDELEILVQLEMKKMILDRMVNLL 493

Query: 497 CRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITG 556
            RGCVVPV++Y+KQC    DTDISLIRYFVTEVLE IT PY+PEFVQLFLP+VEN+EITG
Sbjct: 494 TRGCVVPVLRYIKQCCAIEDTDISLIRYFVTEVLETITHPYSPEFVQLFLPMVENEEITG 553

Query: 557 TMRGDGENDPVSEFIVQTLEH 577
           TMRG+G+NDPVSEFIV    H
Sbjct: 554 TMRGEGDNDPVSEFIVHCKAH 574

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex, causes transcriptional pausing.
Drosophila melanogaster (taxid: 7227)

>sp|Q922L6|NELFD_MOUSE Negative elongation factor D OS=Mus musculus GN=Th1l PE=2 SV=2

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/581 (59%), Positives = 457/581 (78%), Gaps = 16/581 (2%)

Query: 1   MNDDYDDEQTHRWDQDMVDVDSDGG----DDPME--NPQEVLNECLEKFSTPDYIMEPGI 54
           M +DY    +  W ++     +DGG    DD  E  +  EV  ECL KFST DYIMEP I
Sbjct: 10  MGEDYFGNAS-EWGEE-----ADGGQHQEDDSGEGEDDAEVQQECLHKFSTRDYIMEPSI 63

Query: 55  FSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDM 114
           F+ LKRYFQAGG+PE VI+LLS+NY AVAQ  NL+AEWLI  GV   +VQ  VENHLK +
Sbjct: 64  FNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSL 123

Query: 115 ILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDA 174
           ++K FDP+KAD+IFTEEGETPAWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDA
Sbjct: 124 LIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDA 183

Query: 175 GFQREITSISTAAQQIEVFSRVLKTSISNFLESS-DDWQSSVEECAKMVCHGQHTYVYSQ 233
           G+Q EITS+STA QQ+EVFSRVL+TS++  L+   ++ + ++ E AKMVCHG+HTY+++Q
Sbjct: 184 GYQGEITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQ 243

Query: 234 VLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISR 293
            ++ VL+ E +GGS V+R+AQE+ + AQ+ GHD + I +AL  AA YP+A QAL +M+SR
Sbjct: 244 AMMSVLAQEEQGGSAVRRVAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSR 303

Query: 294 NSLNPADITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAY 353
            +LNPADITVLF++++S DPPP++LIR+P FL+L   SLFKPG K+N +HK KYI++LAY
Sbjct: 304 GALNPADITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGAKINQDHKHKYIHILAY 363

Query: 354 ASSVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHSI-CNSSKSSNELIAEITTLFHCIRY 412
           A+SV  V T KK K+ S  KD+LK+T +AIE VH++ CN +K ++EL+AE++TL+ CIR+
Sbjct: 364 AASV--VETWKKNKRVSIGKDELKSTSKAIETVHNLCCNENKGASELVAELSTLYQCIRF 421

Query: 413 PVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESK 472
           PVV++GV++WV+ TV+EP YF+L T+HTP HLALLDE+ TCH  LH +VLQL ++LFE++
Sbjct: 422 PVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETE 481

Query: 473 QDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEA 532
             +L+++ QLE++K LLDRMV+LL RG V+PVV Y+++C ++ DTDISLIRYFVTEVL+ 
Sbjct: 482 HSQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLDV 541

Query: 533 ITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVQ 573
           I PPYT +FVQLFLPI+END I GT++ +GE+DPV+EFI  
Sbjct: 542 IAPPYTSDFVQLFLPILENDSIAGTIKAEGEHDPVTEFIAH 582

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex.

Mus musculus (taxid: 10090)

>sp|Q8IXH7|NELFD_HUMAN Negative elongation factor C/D OS=Homo sapiens GN=TH1L PE=1 SV=2

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/576 (58%), Positives = 456/576 (79%), Gaps = 7/576 (1%)

Query: 1   MNDDYDDEQTHRWDQ-DMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLK 59
           M++DY        D+ D    + D G+   E+  EV  ECL KFST DYIMEP IF+ LK
Sbjct: 10  MDEDYYGSAAEWGDEADGGQQEDDSGEG--EDDAEVQQECLHKFSTRDYIMEPSIFNTLK 67

Query: 60  RYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTF 119
           RYFQAGG+PE VI+LLS+NY AVAQ  NL+AEWLI  GV   +VQ  VENHLK +++K F
Sbjct: 68  RYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHF 127

Query: 120 DPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQRE 179
           DP+KAD+IFTEEGETPAWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG+Q E
Sbjct: 128 DPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGE 187

Query: 180 ITSISTAAQQIEVFSRVLKTSISNFLESS-DDWQSSVEECAKMVCHGQHTYVYSQVLLQV 238
           ITS+STA QQ+EVFSRVL+TS++  L+   ++ + ++ E AKMVCHG+HTY+++Q ++ V
Sbjct: 188 ITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQAMMSV 247

Query: 239 LSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNP 298
           L+ E +GGS V+R+AQE+ + AQ+ GHD + I +AL  AA YP+A QAL +M+S+ +LNP
Sbjct: 248 LAQEEQGGSAVRRIAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSKGALNP 307

Query: 299 ADITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVY 358
           ADITVLF++++S DPPP++LIR+P FL+L   SLFKPG ++N +HK KYI++LAYA+SV 
Sbjct: 308 ADITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQDHKHKYIHILAYAASV- 366

Query: 359 EVSTGKKTKQKSFNKDDLKTTIQAIEKVHSI-CNSSKSSNELIAEITTLFHCIRYPVVSV 417
            V T KK K+ S NKD+LK+T +A+E VH++ CN +K ++EL+AE++TL+ CIR+PVV++
Sbjct: 367 -VETWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGASELVAELSTLYQCIRFPVVAM 425

Query: 418 GVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELE 477
           GV++WV+ TV+EP YF+L T+HTP HLALLDE+ TCH  LH +VLQL ++LFE++  +L+
Sbjct: 426 GVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLD 485

Query: 478 ILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPY 537
           ++ QLE++K LLDRMV+LL RG V+PVV Y+++C ++ DTDISLIRYFVTEVL+ I PPY
Sbjct: 486 VMEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPY 545

Query: 538 TPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVQ 573
           T +FVQLFLPI+END I GT++ +GE+DPV+EFI  
Sbjct: 546 TSDFVQLFLPILENDSIAGTIKTEGEHDPVTEFIAH 581

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex.

Homo sapiens (taxid: 9606)

>sp|Q5RFA0|NELFD_PONAB Negative elongation factor D OS=Pongo abelii GN=TH1L PE=2 SV=1

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/576 (58%), Positives = 456/576 (79%), Gaps = 7/576 (1%)

Query: 1   MNDDYDDEQTHRWDQ-DMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLK 59
           M++DY        D+ D    + D G+   E+  EV  ECL KFST DYIMEP IF+ LK
Sbjct: 10  MDEDYYGSAAEWGDEADGGQQEDDSGEG--EDDAEVQQECLHKFSTRDYIMEPSIFNTLK 67

Query: 60  RYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTF 119
           RYFQAGG+PE VI+LLS+NY AVAQ  NL+AEWLI  GV   +VQ  VENHLK +++K F
Sbjct: 68  RYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHF 127

Query: 120 DPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQRE 179
           DP+KAD+IFTEEGETPAWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG+Q E
Sbjct: 128 DPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGE 187

Query: 180 ITSISTAAQQIEVFSRVLKTSISNFLESS-DDWQSSVEECAKMVCHGQHTYVYSQVLLQV 238
           ITS+STA QQ+EVFSRVL+TS++  L+   ++ + ++ E AKMVCHG+HTY+++Q ++ V
Sbjct: 188 ITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQAMMSV 247

Query: 239 LSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNP 298
           L+ E +GGS V+R+AQE+ + AQ+ GHD + I +AL  AA YP+A QAL +M+S+ +LNP
Sbjct: 248 LAQEEQGGSAVRRIAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSKGALNP 307

Query: 299 ADITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVY 358
           ADITVLF++++S DPPP++LIR+P FL+L   SLFKPG ++N +HK KYI++LAYA+SV 
Sbjct: 308 ADITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQDHKHKYIHILAYAASV- 366

Query: 359 EVSTGKKTKQKSFNKDDLKTTIQAIEKVHSI-CNSSKSSNELIAEITTLFHCIRYPVVSV 417
            V T KK K+ S NKD+LK+T +A+E VH++ CN +K ++EL+AE++TL+ CIR+PVV++
Sbjct: 367 -VETWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGASELVAELSTLYQCIRFPVVAM 425

Query: 418 GVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELE 477
           GV++WV+ TV+EP YF+L T+HTP HLALLDE+ TCH  LH +VLQL ++LFE++  +L+
Sbjct: 426 GVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLD 485

Query: 478 ILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPY 537
           ++ QLE++K LLDRMV+LL RG V+PVV Y+++C ++ DTDISLIRYFVTEVL+ I PPY
Sbjct: 486 VMEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPY 545

Query: 538 TPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVQ 573
           T +FVQLFLPI+END I GT++ +GE+DPV+EFI  
Sbjct: 546 TSDFVQLFLPILENDSIAGTIKTEGEHDPVTEFIAH 581

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex.

Pongo abelii (taxid: 9601)

>sp|A5GFY4|NELFD_PIG Negative elongation factor D OS=Sus scrofa GN=TH1L PE=2 SV=1

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/580 (58%), Positives = 456/580 (78%), Gaps = 15/580 (2%)

Query: 1   MNDDYDDEQTHRWDQDMVDVDSDGG---DD--PMENPQEVLNECLEKFSTPDYIMEPGIF 55
           M++DY        D+      +DGG   DD    E+  EV  ECL KFST DYIMEP IF
Sbjct: 10  MDEDYFGSAAEWGDE------ADGGQQEDDYGEGEDDAEVQQECLHKFSTRDYIMEPSIF 63

Query: 56  SQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMI 115
           + LKRYFQAGG+PE VI+LLS+NY AVAQ  NL+AEWLI  GV   +VQ  VENHLK ++
Sbjct: 64  NTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLL 123

Query: 116 LKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAG 175
           +K FDP+KAD+IFTEEGETPAWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG
Sbjct: 124 IKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAG 183

Query: 176 FQREITSISTAAQQIEVFSRVLKTSISNFLESS-DDWQSSVEECAKMVCHGQHTYVYSQV 234
           +Q EITS+STA QQ+EVFSRVL+TS++  L+   ++ +  + E AKMVCHG+HTY+++Q 
Sbjct: 184 YQGEITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKHLPEFAKMVCHGEHTYLFAQA 243

Query: 235 LLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRN 294
           ++ VL+ E +GGS V+R+AQE+ + AQ+ GHD + I +AL  AA YP+A QAL +M+S+ 
Sbjct: 244 MMSVLAQEEQGGSAVRRVAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSKG 303

Query: 295 SLNPADITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYA 354
           +LNPADITVLF++++S DPPP++LIR+P FL+L   SLFKPG ++N +HK KYI++LAYA
Sbjct: 304 ALNPADITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQDHKHKYIHILAYA 363

Query: 355 SSVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHSI-CNSSKSSNELIAEITTLFHCIRYP 413
           +SV  V T KK K+ S NKD+LK+T +A+E VH++ CN +K ++EL+AE++TL+ CIR+P
Sbjct: 364 ASV--VETWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGASELVAELSTLYQCIRFP 421

Query: 414 VVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQ 473
           VV++GV++WV+ TV+EP YF+L T+HTP HLALLDE+ TCH  LH +VLQL ++LFE++ 
Sbjct: 422 VVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEH 481

Query: 474 DELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAI 533
            +L+++ QLE++K LLDRMV+LL RG V+PVV Y+++C ++ DTDISLIR+FVTEVL+ I
Sbjct: 482 SQLDVMEQLELKKTLLDRMVHLLSRGHVLPVVSYIRKCLEKLDTDISLIRHFVTEVLDVI 541

Query: 534 TPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVQ 573
            PPYT +FVQLFLPI+END I GT++ +GE+DPV+EFI  
Sbjct: 542 APPYTSDFVQLFLPILENDSIAGTIKTEGEHDPVTEFIAH 581

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	620
91078898	578	PREDICTED: similar to TH1 CG9984-PA [Tri	0.914	0.980	0.785	0.0
242022458	580	Negative elongation factor D, putative [	0.885	0.946	0.823	0.0
307184650	579	Negative elongation factor D [Camponotus	0.925	0.991	0.781	0.0
193211439	580	negative elongation factor D [Nasonia vi	0.908	0.970	0.8	0.0
350420164	580	PREDICTED: negative elongation factor D-	0.927	0.991	0.776	0.0
340722089	580	PREDICTED: LOW QUALITY PROTEIN: negative	0.927	0.991	0.774	0.0
380011013	580	PREDICTED: negative elongation factor D-	0.927	0.991	0.772	0.0
332021804	587	Negative elongation factor D [Acromyrmex	0.929	0.981	0.778	0.0
307208263	582	Negative elongation factor D [Harpegnath	0.924	0.984	0.775	0.0
157167599	586	hypothetical protein AaeL_AAEL002450 [Ae	0.898	0.950	0.778	0.0

>gi|91078898|ref|XP_973390.1| PREDICTED: similar to TH1 CG9984-PA [Tribolium castaneum] gi|270004155|gb|EFA00603.1| hypothetical protein TcasGA2_TC003474 [Tribolium castaneum]

 Score =  949 bits (2453), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/573 (78%), Positives = 514/573 (89%), Gaps = 6/573 (1%)

Query: 1   MNDDYDDEQTHRWDQ-DMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLK 59
           M+++YD+     WD  D +D DSD GD+  ENP++VL EC EKFST DYIMEPGIFSQLK
Sbjct: 1   MDEEYDE---RNWDTVDRLDNDSDAGDE-TENPEQVLKECAEKFSTSDYIMEPGIFSQLK 56

Query: 60  RYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTF 119
           RYFQ+GGNP QVIE LSQNY AVAQMANL+AEWLI GGVNVT VQAMVENHLK+MILKTF
Sbjct: 57  RYFQSGGNPLQVIEELSQNYTAVAQMANLIAEWLITGGVNVTSVQAMVENHLKEMILKTF 116

Query: 120 DPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQRE 179
           DPKKADTIFTEEGETPAWLT++IEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQ E
Sbjct: 117 DPKKADTIFTEEGETPAWLTQLIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQAE 176

Query: 180 ITSISTAAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVL 239
           ITSISTAAQQ+EVFSRVLKTSI++FL + +DWQ++ +ECAKMVCHGQHTYVYSQV++ VL
Sbjct: 177 ITSISTAAQQLEVFSRVLKTSIASFLTNPEDWQNTSKECAKMVCHGQHTYVYSQVIIHVL 236

Query: 240 SLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPA 299
           + ESKGGS +KRL+QEITKCAQ++GHDVTPI MALNGA+ YP A QAL+SM+S+N+LNPA
Sbjct: 237 ARESKGGSSMKRLSQEITKCAQKNGHDVTPITMALNGASAYPLACQALTSMLSKNTLNPA 296

Query: 300 DITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYE 359
           DITVL+R Y++PDPPPIDLIR PQFLELL D+LFKPGVKLNP+HKPKYI+LLAYA+SVYE
Sbjct: 297 DITVLYRNYNAPDPPPIDLIRTPQFLELLIDALFKPGVKLNPDHKPKYIHLLAYAASVYE 356

Query: 360 VSTGKKTKQKSFNKDDLKTTIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGV 419
           +   KK +++  NKD+L+ TI +IE VH+ICN++K S+EL+AE+ TL+ C+RYPVVSVG+
Sbjct: 357 MQ-AKKGQKRVVNKDELQATIHSIETVHNICNTNKGSSELMAELATLYQCLRYPVVSVGI 415

Query: 420 IRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEIL 479
           IRWVECTVTE SYFKL TEHTP HLALLDEVVTCH  LH++VL L I LFESKQDELEIL
Sbjct: 416 IRWVECTVTEASYFKLSTEHTPIHLALLDEVVTCHPLLHNQVLDLLIRLFESKQDELEIL 475

Query: 480 VQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTP 539
           VQLEMRKM+LDRMVNLLC GCVVPVVKY+KQCWQ+GDTDISLIRYFVTEVLE I PPY+ 
Sbjct: 476 VQLEMRKMVLDRMVNLLCAGCVVPVVKYIKQCWQKGDTDISLIRYFVTEVLETIGPPYSS 535

Query: 540 EFVQLFLPIVENDEITGTMRGDGENDPVSEFIV 572
           EFV LF+P+VENDEITGTMRGDGENDPVSEFIV
Sbjct: 536 EFVHLFMPMVENDEITGTMRGDGENDPVSEFIV 568

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022458|ref|XP_002431657.1| Negative elongation factor D, putative [Pediculus humanus corporis] gi|212516965|gb|EEB18919.1| Negative elongation factor D, putative [Pediculus humanus corporis]

 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/550 (82%), Positives = 494/550 (89%), Gaps = 1/550 (0%)

Query: 29  MENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANL 88
           +ENPQEVL ECLEKFSTPDYIMEPGIF+QLKRYFQAGGNPEQVI+LLSQNY A AQMANL
Sbjct: 27  LENPQEVLTECLEKFSTPDYIMEPGIFTQLKRYFQAGGNPEQVIDLLSQNYSATAQMANL 86

Query: 89  VAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWR 148
           +AEWLI GGVNVT VQAMVENHLKDM+LKTFDPKKADTIFTEEGETPAWLTEMIEHPTWR
Sbjct: 87  LAEWLISGGVNVTAVQAMVENHLKDMVLKTFDPKKADTIFTEEGETPAWLTEMIEHPTWR 146

Query: 149 SLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESS 208
           SLIYRLAEEYPDCLMLNFTIKLISDAGFQ EITSISTAAQQIEVFSRVLKT+IS FL ++
Sbjct: 147 SLIYRLAEEYPDCLMLNFTIKLISDAGFQGEITSISTAAQQIEVFSRVLKTAISGFLTNA 206

Query: 209 DDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVT 268
           DDWQ +++EC KMVCHGQHTYVYSQVLLQVLS E+KGGS +KRL+QEI KCAQ++ HDVT
Sbjct: 207 DDWQKNIQECGKMVCHGQHTYVYSQVLLQVLSQETKGGSNMKRLSQEIIKCAQKNHHDVT 266

Query: 269 PIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSPDPPPIDLIRIPQFLELL 328
           PI MALNGA  YPQA QAL+SM+SRN+LNPADITVLFR YS+PDPPPIDLIR PQFLELL
Sbjct: 267 PITMALNGATQYPQACQALTSMLSRNNLNPADITVLFRNYSAPDPPPIDLIRTPQFLELL 326

Query: 329 TDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTGK-KTKQKSFNKDDLKTTIQAIEKVH 387
            DSLFKPG+KLNPEHKPKYIYLLAYA+SV +    K  + ++  NK++LK T QAIEKVH
Sbjct: 327 VDSLFKPGIKLNPEHKPKYIYLLAYAASVCDTPAKKIGSSRRQLNKEELKPTQQAIEKVH 386

Query: 388 SICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALL 447
            ICN++K S ELIAE+ +L+ CI+ PVV+VG++RWVE TVTEPSYFKL TEHTP HLALL
Sbjct: 387 GICNTAKGSGELIAELGSLYQCIKCPVVAVGIVRWVEFTVTEPSYFKLSTEHTPIHLALL 446

Query: 448 DEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKY 507
           DEVVTCH  LH KVL L IELFESKQDELEILVQLEMRKMLLDRMVNLL RGCVVPVVKY
Sbjct: 447 DEVVTCHPLLHTKVLTLLIELFESKQDELEILVQLEMRKMLLDRMVNLLSRGCVVPVVKY 506

Query: 508 VKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPV 567
           VK CW RGDTDISLIRYFVTEVLEA+ PPYT EFVQLFLP+VEN+EITG+MRGDGENDPV
Sbjct: 507 VKHCWTRGDTDISLIRYFVTEVLEAVAPPYTLEFVQLFLPMVENEEITGSMRGDGENDPV 566

Query: 568 SEFIVQTLEH 577
           SEFIV    H
Sbjct: 567 SEFIVHCKAH 576

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184650|gb|EFN70979.1| Negative elongation factor D [Camponotus floridanus]

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/577 (78%), Positives = 509/577 (88%), Gaps = 3/577 (0%)

Query: 1   MNDDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
           M  DYD++++  W  +M   D   G+D  +NPQEVLNECL+KF TPDYIMEPGIF+QLKR
Sbjct: 1   MESDYDEDRSG-WGDEMNRSDDCSGEDTFDNPQEVLNECLDKFKTPDYIMEPGIFAQLKR 59

Query: 61  YFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFD 120
           YFQAGGNPEQVIELLS+NY A AQMANL+AEWLIL GV VT+VQAMVEN+LKDMILKTFD
Sbjct: 60  YFQAGGNPEQVIELLSKNYTACAQMANLLAEWLILAGVKVTDVQAMVENNLKDMILKTFD 119

Query: 121 PKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREI 180
           PKKAD IFTEEGETPAWLTEMI+HPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQ EI
Sbjct: 120 PKKADKIFTEEGETPAWLTEMIQHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQGEI 179

Query: 181 TSISTAAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLS 240
           TSISTAAQQIEVFSRVLKT+I+ FLE++++WQSS++ECAKMVCHGQHTYVYSQVLLQ+L+
Sbjct: 180 TSISTAAQQIEVFSRVLKTAIAGFLENTENWQSSIQECAKMVCHGQHTYVYSQVLLQILA 239

Query: 241 LESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPAD 300
            ES+GG  +KRL+QEITKCAQQ+ HDVTPI MALNGAA  P A QAL+SM+SRN+LNPAD
Sbjct: 240 QESRGGFMMKRLSQEITKCAQQNRHDVTPITMALNGAASSPGACQALASMLSRNTLNPAD 299

Query: 301 ITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEV 360
           ITVLFR +S+ +PPPI+L+R PQFLELL D+LFKPGVK+NPEHK KYIYLLAYA+SV E 
Sbjct: 300 ITVLFRNFSTSEPPPIELLRNPQFLELLVDALFKPGVKINPEHKSKYIYLLAYAASVCE- 358

Query: 361 STGKKTKQKSFNKDDLKTTIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVI 420
            T KK   +  NKD+LKTTIQAIEKVH+ICN +K S ELIAE+ TL+ CIR+PVVSVG+I
Sbjct: 359 -TTKKGNTRKINKDELKTTIQAIEKVHNICNINKGSTELIAELHTLYQCIRFPVVSVGII 417

Query: 421 RWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILV 480
           RWVECTVTEPSYFKLCTEH P HLALLDEVV CH+ LH K+L L + LFESKQDELEILV
Sbjct: 418 RWVECTVTEPSYFKLCTEHCPVHLALLDEVVVCHSLLHTKILNLLVHLFESKQDELEILV 477

Query: 481 QLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPE 540
           QLEM+KML+DRMVNLL RGCVVPVV Y+KQCWQRGDTD+SLIRYFVTEVLEAI PPYT E
Sbjct: 478 QLEMKKMLIDRMVNLLSRGCVVPVVYYIKQCWQRGDTDVSLIRYFVTEVLEAIAPPYTAE 537

Query: 541 FVQLFLPIVENDEITGTMRGDGENDPVSEFIVQTLEH 577
           FVQLFLP+VE++EITGTMRG+ END VSEFIV    H
Sbjct: 538 FVQLFLPMVEDEEITGTMRGENENDLVSEFIVHCKTH 574

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193211439|ref|NP_001123224.1| negative elongation factor D [Nasonia vitripennis]

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/565 (80%), Positives = 503/565 (89%), Gaps = 2/565 (0%)

Query: 8   EQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGN 67
           E+   W+ DM   D   G+DP ENPQ+VL ECL+KF+TPDYIMEPGIF+QLKRYFQAGGN
Sbjct: 7   EEHSNWE-DMNRGDDISGEDPSENPQQVLKECLDKFNTPDYIMEPGIFTQLKRYFQAGGN 65

Query: 68  PEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTI 127
           PE VIELLS+NY A AQMANL+AEWLIL GV VT+VQAMVEN+LKDMILKTFDPKKAD I
Sbjct: 66  PETVIELLSKNYTACAQMANLLAEWLILAGVKVTDVQAMVENNLKDMILKTFDPKKADKI 125

Query: 128 FTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAA 187
           FTEEGETPAWLTEMI+HPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQ EITSISTAA
Sbjct: 126 FTEEGETPAWLTEMIQHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQGEITSISTAA 185

Query: 188 QQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGS 247
           QQIEVFSRVLKT+I+ FL ++++WQSS++ECAKMVCHGQHTYVYSQVLL +L+ E KGG 
Sbjct: 186 QQIEVFSRVLKTAIAGFLRNTENWQSSIQECAKMVCHGQHTYVYSQVLLHILAQEPKGGF 245

Query: 248 KVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRL 307
            +KRL+QEITKCAQQS HDVTPI MALNGAA  P A QAL+SM+SRN+LNPADITVLFR 
Sbjct: 246 MMKRLSQEITKCAQQSRHDVTPITMALNGAAGSPAACQALASMLSRNNLNPADITVLFRN 305

Query: 308 YSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKKTK 367
           YS P+PPP +LIR PQFLELL D+LFKPGVK+NPEHK KYIYLLAYA+SVYE +  KK  
Sbjct: 306 YSLPEPPPTELIRNPQFLELLVDALFKPGVKINPEHKSKYIYLLAYAASVYE-TAAKKGV 364

Query: 368 QKSFNKDDLKTTIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTV 427
           Q+  NKDDLKTTIQAIEKVH+ CN++K S ELIAEI TL+ CIR+PVVSVGVIRWVECTV
Sbjct: 365 QRKVNKDDLKTTIQAIEKVHNTCNTNKGSTELIAEINTLYQCIRFPVVSVGVIRWVECTV 424

Query: 428 TEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKM 487
           TEPSYFKLCTEH P HLALLDEVV CH  LH KVL+L I+LFESKQDELEILVQLEM+KM
Sbjct: 425 TEPSYFKLCTEHCPIHLALLDEVVACHNLLHPKVLRLLIQLFESKQDELEILVQLEMKKM 484

Query: 488 LLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLP 547
           L+DRMVNLL RGCVVPVV Y+KQCWQRGDTDISLIRYFVTEVLEAI PPY+ EF+QLFLP
Sbjct: 485 LIDRMVNLLSRGCVVPVVSYIKQCWQRGDTDISLIRYFVTEVLEAIAPPYSGEFIQLFLP 544

Query: 548 IVENDEITGTMRGDGENDPVSEFIV 572
           +VEN+EITG+MRGDG+ND VSEFI+
Sbjct: 545 MVENEEITGSMRGDGDNDLVSEFII 569

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350420164|ref|XP_003492420.1| PREDICTED: negative elongation factor D-like isoform 1 [Bombus impatiens] gi|350420167|ref|XP_003492421.1| PREDICTED: negative elongation factor D-like isoform 2 [Bombus impatiens]

 Score =  946 bits (2444), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/577 (77%), Positives = 511/577 (88%), Gaps = 2/577 (0%)

Query: 1   MNDDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
           M  DYD+++   W ++M   +   G+D  +NPQE+LNECL+KF TPDYIMEPGIF+QLKR
Sbjct: 1   MEMDYDEDRG-AWTEEMTRSEECIGEDSFDNPQEILNECLDKFKTPDYIMEPGIFAQLKR 59

Query: 61  YFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFD 120
           YFQAGGNPEQVIELLS+NY A AQMANL+AEWLIL GV VT+VQAMVEN+LKDMILKTFD
Sbjct: 60  YFQAGGNPEQVIELLSKNYTACAQMANLLAEWLILAGVKVTDVQAMVENNLKDMILKTFD 119

Query: 121 PKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREI 180
           PKKAD IFTEEGETPAWLTEMI+HPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQ EI
Sbjct: 120 PKKADKIFTEEGETPAWLTEMIQHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQGEI 179

Query: 181 TSISTAAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLS 240
           TSISTAAQQIEVFSRVLKT+I+ FL++++DWQSS++ECAKMVCHGQHTYVYSQVLLQ+L+
Sbjct: 180 TSISTAAQQIEVFSRVLKTAIAGFLQNTEDWQSSIQECAKMVCHGQHTYVYSQVLLQILA 239

Query: 241 LESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPAD 300
            ES+GG  +KRL+QEITKCAQQ+ HDVTPI MALNGA+  P A QAL+SM+SRN+LNPAD
Sbjct: 240 QESRGGFMMKRLSQEITKCAQQNHHDVTPITMALNGASSSPSACQALASMLSRNTLNPAD 299

Query: 301 ITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEV 360
           ITVLFR YS+ +PPPI+L+R PQFLELL D+LFKPGVK+NPEHK KYIYLLAYA+SV ++
Sbjct: 300 ITVLFRNYSTAEPPPIELLRNPQFLELLVDALFKPGVKINPEHKSKYIYLLAYAASVCDI 359

Query: 361 STGKKTKQKSFNKDDLKTTIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVI 420
              KKT  +  NKD+LKTTIQAIEKVH+ICN +K S ELIAE+ TL+ CIR+PVVSVG+I
Sbjct: 360 P-AKKTHSRKLNKDELKTTIQAIEKVHNICNINKGSTELIAELQTLYQCIRFPVVSVGII 418

Query: 421 RWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILV 480
           RWVECTVTEPSYFKLCTEH P HLALLDEVV CH+ LH KVLQL ++LFESKQDELEILV
Sbjct: 419 RWVECTVTEPSYFKLCTEHCPVHLALLDEVVVCHSLLHPKVLQLLVQLFESKQDELEILV 478

Query: 481 QLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPE 540
           QLEM+KML+DRMVNLL RGCVVPVV Y+KQCWQRGDTD+SLIRYFVTEVLEAI PPYT E
Sbjct: 479 QLEMKKMLIDRMVNLLSRGCVVPVVCYIKQCWQRGDTDVSLIRYFVTEVLEAIAPPYTAE 538

Query: 541 FVQLFLPIVENDEITGTMRGDGENDPVSEFIVQTLEH 577
           F+ LFLP+VE++EITGTMRGD +ND VSEFIV    H
Sbjct: 539 FIHLFLPMVEDEEITGTMRGDSDNDLVSEFIVHCKAH 575

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722089|ref|XP_003399442.1| PREDICTED: LOW QUALITY PROTEIN: negative elongation factor D-like [Bombus terrestris]

 Score =  944 bits (2440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/577 (77%), Positives = 510/577 (88%), Gaps = 2/577 (0%)

Query: 1   MNDDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
           M  DYD+++   W ++M   +   G+D  +NPQE+LNECL+KF TPDYIMEPGIF+QLKR
Sbjct: 1   MESDYDEDRG-AWTEEMTRSEDCLGEDSFDNPQEILNECLDKFKTPDYIMEPGIFAQLKR 59

Query: 61  YFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFD 120
           YFQAGGNPEQVIELLS+NY A AQMANL+AEWLIL GV VT+VQAMVEN+LKDMILKTFD
Sbjct: 60  YFQAGGNPEQVIELLSKNYTACAQMANLLAEWLILAGVKVTDVQAMVENNLKDMILKTFD 119

Query: 121 PKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREI 180
           PKKAD IFTEEGETPAWLTEMI+HPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQ EI
Sbjct: 120 PKKADKIFTEEGETPAWLTEMIQHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQGEI 179

Query: 181 TSISTAAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLS 240
           TSISTAAQQIEVFSRVLKT+I+ FL++++DWQSS++ECAKMVCHGQHTYVYSQVLLQ+L+
Sbjct: 180 TSISTAAQQIEVFSRVLKTAIAGFLQNTEDWQSSIQECAKMVCHGQHTYVYSQVLLQILA 239

Query: 241 LESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPAD 300
            ES+GG  +KRL+QEITKCAQQ+ HDVTPI MALNGA+  P A QAL+SM+SRN+LNPAD
Sbjct: 240 QESRGGFMMKRLSQEITKCAQQNHHDVTPITMALNGASSSPSACQALASMLSRNTLNPAD 299

Query: 301 ITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEV 360
           ITVLFR YS+ +PPPI+L+R PQFLELL D+LFKPGVK+NPEHK KYIYLLAYA+SV ++
Sbjct: 300 ITVLFRNYSTAEPPPIELLRNPQFLELLVDALFKPGVKINPEHKSKYIYLLAYAASVCDI 359

Query: 361 STGKKTKQKSFNKDDLKTTIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVI 420
              KK   +  NKD+LKTTIQAIEKVH+ICN +K S ELIAE+ TL+ CIR+PVVSVG+I
Sbjct: 360 P-AKKGHSRKLNKDELKTTIQAIEKVHNICNINKGSTELIAELQTLYQCIRFPVVSVGII 418

Query: 421 RWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILV 480
           RWVECTVTEPSYFKLCTEH P HLALLDEVV CH+ LH KVLQL ++LFESKQDELEILV
Sbjct: 419 RWVECTVTEPSYFKLCTEHCPVHLALLDEVVVCHSLLHPKVLQLLVQLFESKQDELEILV 478

Query: 481 QLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPE 540
           QLEM+KML+DRMVNLL RGCVVPVV Y+KQCWQRGDTD+SLIRYFVTEVLEAI PPYT E
Sbjct: 479 QLEMKKMLIDRMVNLLSRGCVVPVVCYIKQCWQRGDTDVSLIRYFVTEVLEAIAPPYTAE 538

Query: 541 FVQLFLPIVENDEITGTMRGDGENDPVSEFIVQTLEH 577
           F+ LFLP+VE++EITGTMRGD +ND VSEFIV    H
Sbjct: 539 FIHLFLPMVEDEEITGTMRGDSDNDLVSEFIVHCKAH 575

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011013|ref|XP_003689608.1| PREDICTED: negative elongation factor D-like [Apis florea]

 Score =  939 bits (2427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/577 (77%), Positives = 509/577 (88%), Gaps = 2/577 (0%)

Query: 1   MNDDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
           M  DYD+++   W ++M   +   G+D  +NPQE+LNECL+KF TPDYIMEPGIF+QLKR
Sbjct: 1   MESDYDEDRG-TWTEEMTRTEDCSGEDNFDNPQEILNECLDKFKTPDYIMEPGIFAQLKR 59

Query: 61  YFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFD 120
           YFQAGGNPEQVIELLS+NY A AQMANL+AEWLIL GV VT+VQAMVEN+LKDMILKTFD
Sbjct: 60  YFQAGGNPEQVIELLSKNYTACAQMANLLAEWLILAGVKVTDVQAMVENNLKDMILKTFD 119

Query: 121 PKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREI 180
           PKKAD IFTEEGETPAWLTEMI+HPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQ EI
Sbjct: 120 PKKADKIFTEEGETPAWLTEMIQHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQGEI 179

Query: 181 TSISTAAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLS 240
           TSISTAAQQIEVFSRVLKT+I+ FL++++DWQSS++ECAKMVCHGQHTYVYSQVLLQ+L+
Sbjct: 180 TSISTAAQQIEVFSRVLKTAIAGFLQNTEDWQSSIQECAKMVCHGQHTYVYSQVLLQILA 239

Query: 241 LESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPAD 300
            ES+GG  +KRL+QEITKCAQQ+ HDVTPI MALNGA+  P A QAL+SM+SRN+LNPAD
Sbjct: 240 QESRGGFMMKRLSQEITKCAQQNHHDVTPITMALNGASSSPGACQALASMLSRNTLNPAD 299

Query: 301 ITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEV 360
           I+VLFR YS+ +PPPI+L+R PQFLELL D+LFKPGVK+NPEHK KYIYLLAYA+SV ++
Sbjct: 300 ISVLFRNYSTAEPPPIELLRNPQFLELLVDALFKPGVKINPEHKSKYIYLLAYAASVCDI 359

Query: 361 STGKKTKQKSFNKDDLKTTIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVI 420
              KK   +  NKD+LKTTIQAIEKVH+ICN +K S ELIAE+ TL+  IR+PVVSVGVI
Sbjct: 360 P-AKKGHSRKLNKDELKTTIQAIEKVHNICNINKGSTELIAELQTLYQSIRFPVVSVGVI 418

Query: 421 RWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILV 480
           RWVECTVTEPSYFKLCTEH P HLALLDEVV CH+ LH KVLQL ++LFESKQDELEILV
Sbjct: 419 RWVECTVTEPSYFKLCTEHCPVHLALLDEVVVCHSLLHPKVLQLLVQLFESKQDELEILV 478

Query: 481 QLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPE 540
           QLEM+KML+DRMVNLL RGCVVPVV Y+KQCWQRGDTD+SLIRYFVTEVLEAI PPYT E
Sbjct: 479 QLEMKKMLIDRMVNLLSRGCVVPVVCYIKQCWQRGDTDVSLIRYFVTEVLEAIAPPYTVE 538

Query: 541 FVQLFLPIVENDEITGTMRGDGENDPVSEFIVQTLEH 577
           F+ LFLP+VE++EITGTMRGD +ND VSEFIV    H
Sbjct: 539 FIHLFLPMVEDEEITGTMRGDSDNDLVSEFIVHCKAH 575

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021804|gb|EGI62150.1| Negative elongation factor D [Acromyrmex echinatior]

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/577 (77%), Positives = 503/577 (87%), Gaps = 1/577 (0%)

Query: 1   MNDDYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
           M  DYDD+     D+     D   G+D  +NPQEVLNECL+KF T DYIMEPGIF QLKR
Sbjct: 7   METDYDDDHGGWRDERNRSTDEYSGEDTFDNPQEVLNECLDKFKTADYIMEPGIFVQLKR 66

Query: 61  YFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFD 120
           YFQAGGNPEQVIELLS+NY A AQMANL+AEWLIL GV VT+VQAMVEN+LKDMILK FD
Sbjct: 67  YFQAGGNPEQVIELLSKNYTACAQMANLLAEWLILAGVKVTDVQAMVENNLKDMILKNFD 126

Query: 121 PKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREI 180
           PKKAD IFTEEGETPAWLTEMI+HPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQ EI
Sbjct: 127 PKKADKIFTEEGETPAWLTEMIQHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQGEI 186

Query: 181 TSISTAAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLS 240
           TSISTAAQQIEVFSRVLKT+I+ FL+++++WQSS++ECAKMVCHGQHTYVYSQVLLQ+L+
Sbjct: 187 TSISTAAQQIEVFSRVLKTAIAGFLQNTENWQSSIQECAKMVCHGQHTYVYSQVLLQILA 246

Query: 241 LESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPAD 300
            ES+GG  +KRL+QEITKCAQQ  HDVTPI MALNGAA  P A QAL+SM+SRNSLNPAD
Sbjct: 247 QESRGGFMMKRLSQEITKCAQQDRHDVTPITMALNGAASSPGACQALASMLSRNSLNPAD 306

Query: 301 ITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEV 360
           ITVLFR YS+ + PPI+L+R PQFLELL D+LFKPGVK+NPEHK KYIYLLAYA+SV E 
Sbjct: 307 ITVLFRNYSATESPPIELLRNPQFLELLVDALFKPGVKINPEHKSKYIYLLAYAASVCE- 365

Query: 361 STGKKTKQKSFNKDDLKTTIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVI 420
           +  KK+  +  NKD+LKTTIQAIEKVH+ICN +K S ELIAE+ TL+ CIR+PVVSVG+I
Sbjct: 366 TIPKKSNIRKINKDELKTTIQAIEKVHNICNVNKGSTELIAELHTLYQCIRFPVVSVGII 425

Query: 421 RWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILV 480
           RWVECTVTEPSYFKLCTEH P HLALLDEVVTCH  LH K+L+L + LFESKQDELEILV
Sbjct: 426 RWVECTVTEPSYFKLCTEHCPVHLALLDEVVTCHPLLHPKILRLLVHLFESKQDELEILV 485

Query: 481 QLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPE 540
           QLEM+KML+DRMVNLL RGCVVPVV Y+KQCWQRGDTD+SLIRYFVTEVLEAI PPYT E
Sbjct: 486 QLEMKKMLIDRMVNLLSRGCVVPVVCYIKQCWQRGDTDVSLIRYFVTEVLEAIAPPYTAE 545

Query: 541 FVQLFLPIVENDEITGTMRGDGENDPVSEFIVQTLEH 577
           FVQLFLP+VEN+EITGTMRG+ END VSEFI+    H
Sbjct: 546 FVQLFLPMVENEEITGTMRGENENDLVSEFIIHCKTH 582

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208263|gb|EFN85695.1| Negative elongation factor D [Harpegnathos saltator]

 Score =  933 bits (2412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/574 (77%), Positives = 505/574 (87%), Gaps = 1/574 (0%)

Query: 4   DYDDEQTHRWDQDMVDVDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQ 63
           DYD++++   D+   + D  G +D  ENP+EVLNECL+KF TPDYIMEPGIF QLKRYFQ
Sbjct: 5   DYDEDRSSWRDEIGRNSDEGGSEDVPENPKEVLNECLDKFKTPDYIMEPGIFVQLKRYFQ 64

Query: 64  AGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKK 123
           AGGNPEQVIELLS+NY A AQMANL+AEWLIL  VNVT+VQAMVEN+LKDMILKTFDPKK
Sbjct: 65  AGGNPEQVIELLSKNYTACAQMANLLAEWLILAAVNVTDVQAMVENNLKDMILKTFDPKK 124

Query: 124 ADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSI 183
           AD IFTEEGETP+WLTEMI+HPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQ EITSI
Sbjct: 125 ADKIFTEEGETPSWLTEMIQHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQGEITSI 184

Query: 184 STAAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLES 243
           STAAQQIEVFSRVLKT+I+ FLE++++WQSS++ECAKMVCHGQHTYVYSQVLLQ+L+ E 
Sbjct: 185 STAAQQIEVFSRVLKTAIAGFLENTENWQSSIQECAKMVCHGQHTYVYSQVLLQILAQEP 244

Query: 244 KGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPADITV 303
           +GG  +KRL+QEITKCAQQ+ HDVTPI MALNGAA  P A QALSSM+SRNSLNPADITV
Sbjct: 245 RGGFMMKRLSQEITKCAQQNRHDVTPITMALNGAASSPGACQALSSMLSRNSLNPADITV 304

Query: 304 LFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTG 363
           L+R YS+ +PPPI+L+R PQFLELL D+LFKPGVK+NPEHK KYIYLLAYA+SV E +  
Sbjct: 305 LYRNYSAAEPPPIELLRNPQFLELLVDALFKPGVKINPEHKSKYIYLLAYAASVCETAP- 363

Query: 364 KKTKQKSFNKDDLKTTIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWV 423
           KK   +  NKDDLKTT QAIEKVH+ICN +K S ELIAE+ TL+ CIR+PVVSVGVIRWV
Sbjct: 364 KKGNTRKINKDDLKTTTQAIEKVHNICNVNKGSTELIAELQTLYQCIRFPVVSVGVIRWV 423

Query: 424 ECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLE 483
           ECTVTEPSYFKLCTEH P HLALLDEVV CH  LH KVL+L ++LFESKQDELEILVQLE
Sbjct: 424 ECTVTEPSYFKLCTEHCPLHLALLDEVVVCHPLLHPKVLRLLVQLFESKQDELEILVQLE 483

Query: 484 MRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQ 543
           M+KML+DRMVNLL +GCVVPVV Y+KQCWQR DTD+SLIRYFVTEVLEAI PPY+ EF+Q
Sbjct: 484 MKKMLIDRMVNLLSKGCVVPVVCYIKQCWQRSDTDVSLIRYFVTEVLEAIAPPYSTEFIQ 543

Query: 544 LFLPIVENDEITGTMRGDGENDPVSEFIVQTLEH 577
           LFLP+VEN+EITG+MRG+ +ND VSEFIV    H
Sbjct: 544 LFLPMVENEEITGSMRGENDNDLVSEFIVHCKTH 577

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157167599|ref|XP_001655264.1| hypothetical protein AaeL_AAEL002450 [Aedes aegypti] gi|108882122|gb|EAT46347.1| AAEL002450-PA [Aedes aegypti]

 Score =  900 bits (2326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/559 (77%), Positives = 486/559 (86%), Gaps = 2/559 (0%)

Query: 21  DSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYK 80
           + DG D+P+ENPQEVLNECL KF+T DYIMEPGIF+QLKRYFQAGG PEQVI  LS NY 
Sbjct: 24  EPDGHDEPLENPQEVLNECLSKFATSDYIMEPGIFTQLKRYFQAGGTPEQVINQLSANYT 83

Query: 81  AVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTE 140
           AVAQMANL+AEWLIL GV VT+VQAMVENHLKDMILKTFDPKKAD IFTEEGETPAWLTE
Sbjct: 84  AVAQMANLLAEWLILAGVRVTDVQAMVENHLKDMILKTFDPKKADKIFTEEGETPAWLTE 143

Query: 141 MIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTS 200
           MIEH TWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQ EITSISTAAQQIEVFSRVLKT+
Sbjct: 144 MIEHHTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQSEITSISTAAQQIEVFSRVLKTA 203

Query: 201 ISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQEITKCA 260
           I+ FL   +DWQSS+ ECAKMVCHGQHTYVYSQVL+QVLS E KGG  +KRLAQEITK A
Sbjct: 204 IAKFLNHPEDWQSSINECAKMVCHGQHTYVYSQVLIQVLSQEPKGGFVMKRLAQEITKYA 263

Query: 261 QQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSPDPPPIDLIR 320
            ++ H+VTPI MALNG+A +PQA +AL+SM++RN+LNPADITVL+R YSS +PPPIDLIR
Sbjct: 264 SKNNHNVTPITMALNGSARHPQACEALTSMLTRNALNPADITVLYRNYSSLEPPPIDLIR 323

Query: 321 IPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYE--VSTGKKTKQKSFNKDDLKT 378
            PQFL+LL DSLFK GVK+N EHK KYIYLLAYA+SV E     G+    ++ NKD+LK 
Sbjct: 324 NPQFLDLLVDSLFKVGVKINQEHKSKYIYLLAYAASVCETPAKKGQPKGHRNINKDELKA 383

Query: 379 TIQAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTE 438
           TIQAIEKVH+ICN ++ S ELIAEI TL+ CIR+PVV VGVIRWVE TVTEPSYFKLCTE
Sbjct: 384 TIQAIEKVHNICNVNRGSTELIAEIATLYQCIRFPVVGVGVIRWVENTVTEPSYFKLCTE 443

Query: 439 HTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCR 498
             P HLALLDEV   H+ LH ++L+L IELFESKQDELEILVQLEM+KMLLDRMVNLL R
Sbjct: 444 SCPLHLALLDEVAQVHSSLHDQILRLLIELFESKQDELEILVQLEMKKMLLDRMVNLLTR 503

Query: 499 GCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTM 558
           GCVVPVVKY++QC  +GDTDISLIRYFVTEVLE IT PY+PEFVQLFLP+VEN+EITG+M
Sbjct: 504 GCVVPVVKYIRQCCNKGDTDISLIRYFVTEVLETITHPYSPEFVQLFLPMVENEEITGSM 563

Query: 559 RGDGENDPVSEFIVQTLEH 577
           RG+G+NDPVSEFIV    H
Sbjct: 564 RGEGDNDPVSEFIVHCKAH 582

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	620
FB|FBgn0010416	578	TH1 "TH1" [Drosophila melanoga	0.883	0.948	0.706	3.2e-207
UNIPROTKB|F1NR08	602	TH1L "Uncharacterized protein"	0.912	0.940	0.566	2.2e-176
UNIPROTKB|Q5ZIQ8	583	TH1L "Uncharacterized protein"	0.912	0.970	0.566	2.2e-176
UNIPROTKB|Q8IXH7	590	NELFCD "Negative elongation fa	0.916	0.962	0.565	2.2e-176
MGI|MGI:1926424	591	Nelfcd "negative elongation fa	0.870	0.913	0.591	2.2e-176
UNIPROTKB|F1PIH1	564	TH1L "Uncharacterized protein"	0.874	0.960	0.586	2.8e-176
UNIPROTKB|F1MW69	600	TH1L "Uncharacterized protein"	0.870	0.9	0.586	1.6e-175
UNIPROTKB|A5GFY4	590	TH1L "Negative elongation fact	0.916	0.962	0.563	2.5e-175
ZFIN|ZDB-GENE-040426-720	579	nelfcd "negative elongation fa	0.864	0.925	0.579	2.1e-171
UNIPROTKB|A5GFY5	291	TH1L "Negative elongation fact	0.433	0.924	0.603	6.9e-86

FB|FBgn0010416 TH1 "TH1" [Drosophila melanogaster (taxid:7227)]

 Score = 2004 (710.5 bits), Expect = 3.2e-207, P = 3.2e-207
 Identities = 388/549 (70%), Positives = 449/549 (81%)

Query:    30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLV 89
             +NPQ+ + ECLEKF TPDYIMEPGIF+QLKRYFQ+GG+PE+VI +LS+NYKAVAQMANL+
Sbjct:    26 DNPQKTIQECLEKFLTPDYIMEPGIFTQLKRYFQSGGSPEEVISMLSENYKAVAQMANLL 85

Query:    90 AEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRS 149
             AEWLIL GV VTEVQAMVENHLK+MILK+FDPKKADTIFTEEGETP WLTEMI+H TWRS
Sbjct:    86 AEWLILAGVKVTEVQAMVENHLKEMILKSFDPKKADTIFTEEGETPDWLTEMIDHYTWRS 145

Query:   150 LIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSD 209
             LIYRLAEEYPDCLMLNFTIKLISDAGFQ EITSISTAAQQIEVFSRVLKTSI  FL + D
Sbjct:   146 LIYRLAEEYPDCLMLNFTIKLISDAGFQSEITSISTAAQQIEVFSRVLKTSIVKFLNNPD 205

Query:   210 DWQSSVEECAKMVCHGQHTXXXXXXXXXXXXXESKGGSKVKRLAQEITKCAQQSGHDVTP 269
             D   +++ECA+MVCHGQHT             E KGG  +KRL+QEI K A Q+  +VTP
Sbjct:   206 DVHGAIQECARMVCHGQHTYVYSQVLIQVLSQEQKGGFNMKRLSQEIIKYALQNNQNVTP 265

Query:   270 IIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSXXXXXXXXXXXXQFLELLT 329
             I MALNG+A YPQA QAL+SM++RN+LNPADITVLFR YS             QFLELL 
Sbjct:   266 ITMALNGSAVYPQACQALTSMLTRNTLNPADITVLFRNYSGSDPPPIDLIRNPQFLELLV 325

Query:   330 DSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKKTK-QKSFNKDDLKTTIQAIEKVHS 388
             D+LF+ GVK+NPEHKPKY++LLAYAS+V +    K+   ++  NK++LK+TIQAIEK H+
Sbjct:   326 DALFRSGVKINPEHKPKYMFLLAYASAVIDQPAKKRPMTERMLNKEELKSTIQAIEKAHT 385

Query:   389 ICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLD 448
             ICN  + S ELIAE+ TL++CI+YPVV VGVIRW+E  V EPSYFKL T+  PTHLA+LD
Sbjct:   386 ICNVDQGSTELIAELQTLYNCIKYPVVGVGVIRWIENVVMEPSYFKLSTDSCPTHLAVLD 445

Query:   449 EVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYV 508
             EV   H  L  ++L L I LFESKQDELEILVQLEM+KM+LDRMVNLL RGCVVPV++Y+
Sbjct:   446 EVAAVHPTLQQQILFLLIRLFESKQDELEILVQLEMKKMILDRMVNLLTRGCVVPVLRYI 505

Query:   509 KQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVS 568
             KQC    DTDISLIRYFVTEVLE IT PY+PEFVQLFLP+VEN+EITGTMRG+G+NDPVS
Sbjct:   506 KQCCAIEDTDISLIRYFVTEVLETITHPYSPEFVQLFLPMVENEEITGTMRGEGDNDPVS 565

Query:   569 EFIVQTLEH 577
             EFIV    H
Sbjct:   566 EFIVHCKAH 574

GO:0003729 "mRNA binding" evidence=IDA

GO:0017053 "transcriptional repressor complex" evidence=IDA

GO:0007070 "negative regulation of transcription from RNA polymerase II promoter during mitosis" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0032021 "NELF complex" evidence=IPI

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1NR08 TH1L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1713 (608.1 bits), Expect = 2.2e-176, P = 2.2e-176
 Identities = 323/570 (56%), Positives = 428/570 (75%)

Query:     4 DYDDEQTHRWXXXXXXXXXXXXXXPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQ 63
             DY +     W                E+  EV  ECL+KFSTPDYIMEP IF+ LKRYFQ
Sbjct:    24 DYFEGGAAEWGNEADGGAQDDEDGEGEDDAEVQQECLKKFSTPDYIMEPSIFNTLKRYFQ 83

Query:    64 AGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKK 123
             AGG+PE VI+LLS+NY AVAQ  NL+AEWLI  GV   +VQ  VENHLK +++K FDP+K
Sbjct:    84 AGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRK 143

Query:   124 ADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSI 183
             AD+IFTEEGETPAWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+
Sbjct:   144 ADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSV 203

Query:   184 STAAQQIEVFSRVLKTSISNFLESSDD-WQSSVEECAKMVCHGQHTXXXXXXXXXXXXXE 242
             STA QQ+EVFSRVL+TS++  L+  ++  + ++ E AKMVCHG+HT             E
Sbjct:   204 STACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQSMMSILAQE 263

Query:   243 SKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPADIT 302
              +GGS V+R+AQE+ + A + GHD + I +AL  AA YP+A QAL +M+S+ +LNPADIT
Sbjct:   264 EQGGSAVRRIAQEVQRYAHEKGHDASQITLALGTAASYPRACQALGAMLSKGALNPADIT 323

Query:   303 VLFRLYSSXXXXXXXXXXXXQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVST 362
             VLF++++S             FL+L   SLFKPG K+N +HK KYI++LAYA+SV E+  
Sbjct:   324 VLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGAKINQDHKHKYIHILAYAASVVEM-- 381

Query:   363 GKKTKQKSFNKDDLKTTIQAIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIR 421
              KK K+ S NKD+LK+T +AIE VH++C N +K ++EL+AE++TL+ CIR+PVV++GV++
Sbjct:   382 WKKNKRVSINKDELKSTSKAIETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLK 441

Query:   422 WVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQ 481
             WV+ TV+EP YF+L T+HTP HLALLDE+ TCH  LH +VLQL ++LFE++  +L+++ Q
Sbjct:   442 WVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQ 501

Query:   482 LEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEF 541
             LE++K LLDRMV+LL RG V+PVV Y+++C ++ DTDISLIRYFVTEVL+ I PPYT +F
Sbjct:   502 LELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDF 561

Query:   542 VQLFLPIVENDEITGTMRGDGENDPVSEFI 571
             VQLFLPI+EN+ I GT++ +GE+DPV+EFI
Sbjct:   562 VQLFLPILENESIAGTIKTEGEHDPVTEFI 591

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0032021 "NELF complex" evidence=IEA

UNIPROTKB|Q5ZIQ8 TH1L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1713 (608.1 bits), Expect = 2.2e-176, P = 2.2e-176
 Identities = 323/570 (56%), Positives = 428/570 (75%)

Query:     4 DYDDEQTHRWXXXXXXXXXXXXXXPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQ 63
             DY +     W                E+  EV  ECL+KFSTPDYIMEP IF+ LKRYFQ
Sbjct:     5 DYFEGGAAEWGNEADGGAQDDEDGEGEDDAEVQQECLKKFSTPDYIMEPSIFNTLKRYFQ 64

Query:    64 AGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKK 123
             AGG+PE VI+LLS+NY AVAQ  NL+AEWLI  GV   +VQ  VENHLK +++K FDP+K
Sbjct:    65 AGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRK 124

Query:   124 ADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSI 183
             AD+IFTEEGETPAWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+
Sbjct:   125 ADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSV 184

Query:   184 STAAQQIEVFSRVLKTSISNFLESSDD-WQSSVEECAKMVCHGQHTXXXXXXXXXXXXXE 242
             STA QQ+EVFSRVL+TS++  L+  ++  + ++ E AKMVCHG+HT             E
Sbjct:   185 STACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQSMMSILAQE 244

Query:   243 SKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPADIT 302
              +GGS V+R+AQE+ + A + GHD + I +AL  AA YP+A QAL +M+S+ +LNPADIT
Sbjct:   245 EQGGSAVRRIAQEVQRYAHEKGHDASQITLALGTAASYPRACQALGAMLSKGALNPADIT 304

Query:   303 VLFRLYSSXXXXXXXXXXXXQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVST 362
             VLF++++S             FL+L   SLFKPG K+N +HK KYI++LAYA+SV E+  
Sbjct:   305 VLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGAKINQDHKHKYIHILAYAASVVEM-- 362

Query:   363 GKKTKQKSFNKDDLKTTIQAIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIR 421
              KK K+ S NKD+LK+T +AIE VH++C N +K ++EL+AE++TL+ CIR+PVV++GV++
Sbjct:   363 WKKNKRVSINKDELKSTSKAIETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLK 422

Query:   422 WVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQ 481
             WV+ TV+EP YF+L T+HTP HLALLDE+ TCH  LH +VLQL ++LFE++  +L+++ Q
Sbjct:   423 WVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQ 482

Query:   482 LEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEF 541
             LE++K LLDRMV+LL RG V+PVV Y+++C ++ DTDISLIRYFVTEVL+ I PPYT +F
Sbjct:   483 LELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDF 542

Query:   542 VQLFLPIVENDEITGTMRGDGENDPVSEFI 571
             VQLFLPI+EN+ I GT++ +GE+DPV+EFI
Sbjct:   543 VQLFLPILENESIAGTIKTEGEHDPVTEFI 572

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0032021 "NELF complex" evidence=IEA

UNIPROTKB|Q8IXH7 NELFCD "Negative elongation factor C/D" [Homo sapiens (taxid:9606)]

 Score = 1713 (608.1 bits), Expect = 2.2e-176, P = 2.2e-176
 Identities = 324/573 (56%), Positives = 429/573 (74%)

Query:     1 MNDDYDDEQTHRWXXXXXXXXXXXXXXPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
             M++DY       W                E+  EV  ECL KFST DYIMEP IF+ LKR
Sbjct:    10 MDEDYYGSAAE-WGDEADGGQQEDDSGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKR 68

Query:    61 YFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFD 120
             YFQAGG+PE VI+LLS+NY AVAQ  NL+AEWLI  GV   +VQ  VENHLK +++K FD
Sbjct:    69 YFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHFD 128

Query:   121 PKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREI 180
             P+KAD+IFTEEGETPAWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG+Q EI
Sbjct:   129 PRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEI 188

Query:   181 TSISTAAQQIEVFSRVLKTSISNFLESSDD-WQSSVEECAKMVCHGQHTXXXXXXXXXXX 239
             TS+STA QQ+EVFSRVL+TS++  L+  ++  + ++ E AKMVCHG+HT           
Sbjct:   189 TSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQAMMSVL 248

Query:   240 XXESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPA 299
               E +GGS V+R+AQE+ + AQ+ GHD + I +AL  AA YP+A QAL +M+S+ +LNPA
Sbjct:   249 AQEEQGGSAVRRIAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSKGALNPA 308

Query:   300 DITVLFRLYSSXXXXXXXXXXXXQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYE 359
             DITVLF++++S             FL+L   SLFKPG ++N +HK KYI++LAYA+SV E
Sbjct:   309 DITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQDHKHKYIHILAYAASVVE 368

Query:   360 VSTGKKTKQKSFNKDDLKTTIQAIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVG 418
               T KK K+ S NKD+LK+T +A+E VH++C N +K ++EL+AE++TL+ CIR+PVV++G
Sbjct:   369 --TWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMG 426

Query:   419 VIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEI 478
             V++WV+ TV+EP YF+L T+HTP HLALLDE+ TCH  LH +VLQL ++LFE++  +L++
Sbjct:   427 VLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDV 486

Query:   479 LVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYT 538
             + QLE++K LLDRMV+LL RG V+PVV Y+++C ++ DTDISLIRYFVTEVL+ I PPYT
Sbjct:   487 MEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYT 546

Query:   539 PEFVQLFLPIVENDEITGTMRGDGENDPVSEFI 571
              +FVQLFLPI+END I GT++ +GE+DPV+EFI
Sbjct:   547 SDFVQLFLPILENDSIAGTIKTEGEHDPVTEFI 579

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0032021 "NELF complex" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0050434 "positive regulation of viral transcription" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1926424 Nelfcd "negative elongation factor complex member C/D, Th1l" [Mus musculus (taxid:10090)]

 Score = 1713 (608.1 bits), Expect = 2.2e-176, P = 2.2e-176
 Identities = 322/544 (59%), Positives = 422/544 (77%)

Query:    30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLV 89
             E+  EV  ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+LLS+NY AVAQ  NL+
Sbjct:    39 EDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLL 98

Query:    90 AEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRS 149
             AEWLI  GV   +VQ  VENHLK +++K FDP+KAD+IFTEEGETPAWL +MI H TWR 
Sbjct:    99 AEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRD 158

Query:   150 LIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSD 209
             L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+STA QQ+EVFSRVL+TS++  L+  +
Sbjct:   159 LFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGE 218

Query:   210 D-WQSSVEECAKMVCHGQHTXXXXXXXXXXXXXESKGGSKVKRLAQEITKCAQQSGHDVT 268
             +  + ++ E AKMVCHG+HT             E +GGS V+R+AQE+ + AQ+ GHD +
Sbjct:   219 ENLEKNLPEFAKMVCHGEHTYLFAQAMMSVLAQEEQGGSAVRRVAQEVQRFAQEKGHDAS 278

Query:   269 PIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSXXXXXXXXXXXXQFLELL 328
              I +AL  AA YP+A QAL +M+SR +LNPADITVLF++++S             FL+L 
Sbjct:   279 QITLALGTAASYPRACQALGAMLSRGALNPADITVLFKMFTSMDPPPVELIRVPAFLDLF 338

Query:   329 TDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHS 388
               SLFKPG K+N +HK KYI++LAYA+SV E  T KK K+ S  KD+LK+T +AIE VH+
Sbjct:   339 MQSLFKPGAKINQDHKHKYIHILAYAASVVE--TWKKNKRVSIGKDELKSTSKAIETVHN 396

Query:   389 IC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALL 447
             +C N +K ++EL+AE++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HTP HLALL
Sbjct:   397 LCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALL 456

Query:   448 DEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKY 507
             DE+ TCH  LH +VLQL ++LFE++  +L+++ QLE++K LLDRMV+LL RG V+PVV Y
Sbjct:   457 DEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSY 516

Query:   508 VKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPV 567
             +++C ++ DTDISLIRYFVTEVL+ I PPYT +FVQLFLPI+END I GT++ +GE+DPV
Sbjct:   517 IRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKAEGEHDPV 576

Query:   568 SEFI 571
             +EFI
Sbjct:   577 TEFI 580

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0032021 "NELF complex" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1PIH1 TH1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1712 (607.7 bits), Expect = 2.8e-176, P = 2.8e-176
 Identities = 320/546 (58%), Positives = 424/546 (77%)

Query:    30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLV 89
             E+  EV  ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+LLS+NY AVAQ  NL+
Sbjct:    10 EDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLL 69

Query:    90 AEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRS 149
             AEWLI  GV   +VQ  VENHLK +++K FDP+KAD+IFTEEGETPAWL +MI H TWR 
Sbjct:    70 AEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRD 129

Query:   150 LIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSD 209
             L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+STA QQ+EVFSRVL+TS++  L+  +
Sbjct:   130 LFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGE 189

Query:   210 D-WQSSVEECAKMVCHGQHTXXXXXXXXXXXXXESKGGSKVKRLAQEITKCAQQSGHDVT 268
             +  + ++ E AKMVCHG+HT             E +GGS V+R+AQE+ + AQ+ GHD +
Sbjct:   190 ENLEKNLPEFAKMVCHGEHTYLFAQAMMSVLAQEEQGGSAVRRIAQEVQRFAQEKGHDAS 249

Query:   269 PIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSXXXXXXXXXXXXQFLELL 328
              I +AL  AA YP+A QAL +M+S+ +LNPADITVLF++++S             FL+L 
Sbjct:   250 QITLALGTAASYPRACQALGAMLSKGALNPADITVLFKMFTSMDPPPVELIRVPAFLDLF 309

Query:   329 TDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHS 388
               SLFKPG ++N +HK KYI++LAYA+SV E  T KK K+   NKD+LK+T +A+E VH+
Sbjct:   310 MQSLFKPGARINQDHKHKYIHILAYAASVVE--TWKKNKRVGINKDELKSTSKAVETVHN 367

Query:   389 IC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALL 447
             +C N +K ++EL+AE++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HTP HLALL
Sbjct:   368 LCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALL 427

Query:   448 DEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKY 507
             DE+ TCH  LH +VLQL ++LFE++  +L+++ QLE++K LLDRMV+LL RG V+PVV Y
Sbjct:   428 DEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSY 487

Query:   508 VKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPV 567
             +++C ++ DTDISLIRYFVTEVL+ I PPYT +FVQLFLPI+END I GT++ +GE+DPV
Sbjct:   488 IRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKTEGEHDPV 547

Query:   568 SEFIVQ 573
             +EFIV+
Sbjct:   548 TEFIVK 553

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1MW69 TH1L "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1705 (605.2 bits), Expect = 1.6e-175, P = 1.6e-175
 Identities = 319/544 (58%), Positives = 423/544 (77%)

Query:    30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLV 89
             E+  EV  ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+LLS+NY AVAQ  NL+
Sbjct:    48 EDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLL 107

Query:    90 AEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRS 149
             AEWLI  GV   +VQ  VENHLK +++K FDP+KAD+IFTEEGETPAWL +MI H TWR 
Sbjct:   108 AEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRD 167

Query:   150 LIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSD 209
             L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+STA QQ+EVFSRVL+TS++  L+  +
Sbjct:   168 LFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGE 227

Query:   210 D-WQSSVEECAKMVCHGQHTXXXXXXXXXXXXXESKGGSKVKRLAQEITKCAQQSGHDVT 268
             +  + ++ E AKMVCHG+HT             E +GGS V+R+AQE+ + AQ+ GHD +
Sbjct:   228 ENLEKNLPEFAKMVCHGEHTYLFAQALMSVLAQEEQGGSAVRRIAQEVQRFAQERGHDAS 287

Query:   269 PIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSXXXXXXXXXXXXQFLELL 328
              I +AL  AA YP+A QAL +M+S+ +LNPADITVLF++++S             FL+L 
Sbjct:   288 QITLALGTAASYPRACQALGAMLSKGALNPADITVLFKMFTSMDPPPVELIRVPAFLDLF 347

Query:   329 TDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHS 388
               SLFKPG ++N +HK KYI++LAYA+SV E  T KK K+ S NKD+LK+T +A+E VH+
Sbjct:   348 MQSLFKPGARINQDHKHKYIHILAYAASVVE--TWKKNKRVSINKDELKSTSKAVETVHN 405

Query:   389 IC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALL 447
             +C N +K ++EL+AE++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HTP HLALL
Sbjct:   406 LCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALL 465

Query:   448 DEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKY 507
             DE+ TCH  LH +VLQL ++LFE++  +L+++ QLE++K LLDRMV+LL RG V+PVV Y
Sbjct:   466 DEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSY 525

Query:   508 VKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPV 567
             +++C ++ DTDISLIR+FVTEVL+ I PPYT +FVQLFLPI+END I GT++ +GE+DPV
Sbjct:   526 IRKCLEKLDTDISLIRHFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKTEGEHDPV 585

Query:   568 SEFI 571
             +EFI
Sbjct:   586 TEFI 589

GO:0032021 "NELF complex" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|A5GFY4 TH1L "Negative elongation factor D" [Sus scrofa (taxid:9823)]

 Score = 1703 (604.5 bits), Expect = 2.5e-175, P = 2.5e-175
 Identities = 323/573 (56%), Positives = 428/573 (74%)

Query:     1 MNDDYDDEQTHRWXXXXXXXXXXXXXXPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKR 60
             M++DY       W                E+  EV  ECL KFST DYIMEP IF+ LKR
Sbjct:    10 MDEDYFGSAAE-WGDEADGGQQEDDYGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKR 68

Query:    61 YFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFD 120
             YFQAGG+PE VI+LLS+NY AVAQ  NL+AEWLI  GV   +VQ  VENHLK +++K FD
Sbjct:    69 YFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHFD 128

Query:   121 PKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREI 180
             P+KAD+IFTEEGETPAWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG+Q EI
Sbjct:   129 PRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEI 188

Query:   181 TSISTAAQQIEVFSRVLKTSISNFLESSDD-WQSSVEECAKMVCHGQHTXXXXXXXXXXX 239
             TS+STA QQ+EVFSRVL+TS++  L+  ++  +  + E AKMVCHG+HT           
Sbjct:   189 TSVSTACQQLEVFSRVLRTSLATILDGGEENLEKHLPEFAKMVCHGEHTYLFAQAMMSVL 248

Query:   240 XXESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPA 299
               E +GGS V+R+AQE+ + AQ+ GHD + I +AL  AA YP+A QAL +M+S+ +LNPA
Sbjct:   249 AQEEQGGSAVRRVAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSKGALNPA 308

Query:   300 DITVLFRLYSSXXXXXXXXXXXXQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYE 359
             DITVLF++++S             FL+L   SLFKPG ++N +HK KYI++LAYA+SV E
Sbjct:   309 DITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQDHKHKYIHILAYAASVVE 368

Query:   360 VSTGKKTKQKSFNKDDLKTTIQAIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVG 418
               T KK K+ S NKD+LK+T +A+E VH++C N +K ++EL+AE++TL+ CIR+PVV++G
Sbjct:   369 --TWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMG 426

Query:   419 VIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEI 478
             V++WV+ TV+EP YF+L T+HTP HLALLDE+ TCH  LH +VLQL ++LFE++  +L++
Sbjct:   427 VLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDV 486

Query:   479 LVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYT 538
             + QLE++K LLDRMV+LL RG V+PVV Y+++C ++ DTDISLIR+FVTEVL+ I PPYT
Sbjct:   487 MEQLELKKTLLDRMVHLLSRGHVLPVVSYIRKCLEKLDTDISLIRHFVTEVLDVIAPPYT 546

Query:   539 PEFVQLFLPIVENDEITGTMRGDGENDPVSEFI 571
              +FVQLFLPI+END I GT++ +GE+DPV+EFI
Sbjct:   547 SDFVQLFLPILENDSIAGTIKTEGEHDPVTEFI 579

GO:0032021 "NELF complex" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

ZFIN|ZDB-GENE-040426-720 nelfcd "negative elongation factor complex member C/D" [Danio rerio (taxid:7955)]

 Score = 1666 (591.5 bits), Expect = 2.1e-171, P = 2.1e-171
 Identities = 313/540 (57%), Positives = 416/540 (77%)

Query:    34 EVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWL 93
             +V  +CL+KFS+ DYIMEP +F+ LK YFQAGG+PE VI+LLS+NY AVAQ  NL+AEWL
Sbjct:    31 KVQEDCLQKFSSRDYIMEPTVFNTLKSYFQAGGSPEHVIQLLSENYSAVAQTVNLLAEWL 90

Query:    94 ILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYR 153
             I  GV   +VQ  VENHLK +++K FDP+KAD+IFT EGETPAWL +MI H TWR L Y+
Sbjct:    91 IQMGVEPAQVQERVENHLKSLLIKHFDPQKADSIFTVEGETPAWLEQMIAHTTWRDLFYK 150

Query:   154 LAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSD-DWQ 212
             LAE +PDCLMLNFT+KLISDAG+Q EITS+STA QQ+EVFSRVL+TS++  L+  + + +
Sbjct:   151 LAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATLLDGGEQNLE 210

Query:   213 SSVEECAKMVCHGQHTXXXXXXXXXXXXXESKGGSKVKRLAQEITKCAQQSGHDVTPIIM 272
              ++ E AKMVCHG+HT             E +GGS ++R+ QE+ K A + GHD + I +
Sbjct:   211 KNLPEFAKMVCHGEHTYLFAQAMMSILAQEEQGGSAMRRIGQEVQKYAHERGHDASQITL 270

Query:   273 ALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSXXXXXXXXXXXXQFLELLTDSL 332
             AL  AA YP+A QAL +M+S+ +LNPADITVLF+++SS             FL+L   SL
Sbjct:   271 ALGTAAAYPRACQALGAMLSKGALNPADITVLFKMFSSMDPPPVELIRVPAFLDLFMQSL 330

Query:   333 FKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHSIC-N 391
             FKPG K+N +HK KYI++LAYA+SV E  T KK K+ + NKD+LK+T +AIE VH++C N
Sbjct:   331 FKPGAKINQDHKHKYIHILAYAASVVE--TWKKNKRVNINKDELKSTSKAIETVHNLCCN 388

Query:   392 SSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVV 451
              +K + EL+A ++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HTP HLALLDE+ 
Sbjct:   389 ENKGATELVAGLSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEIS 448

Query:   452 TCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQC 511
             TCH  LH +VLQL I+LFE++  +L+++ Q+E++K LLDRMV+LL RG V+PVV Y+++C
Sbjct:   449 TCHQLLHPQVLQLLIKLFETEHSQLDVMEQMELKKTLLDRMVHLLSRGYVLPVVGYIRKC 508

Query:   512 WQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFI 571
              ++ +TDISLIRYFVTEVL+ I PPYT +FVQLFLPI+END I GT+R +GENDPV+EFI
Sbjct:   509 LEKLNTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIRTEGENDPVAEFI 568

GO:0005634 "nucleus" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|A5GFY5 TH1L "Negative elongation factor D" [Sus scrofa (taxid:9823)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 163/270 (60%), Positives = 204/270 (75%)

Query:    30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLV 89
             E+  EV  ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+LLS+NY AVAQ  NL+
Sbjct:    22 EDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLL 81

Query:    90 AEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRS 149
             AEWLI  GV   +VQ  VENHLK +++K FDP+KAD+IFTEEGETPAWL +MI H TWR 
Sbjct:    82 AEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRD 141

Query:   150 LIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLESSD 209
             L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+STA QQ+EVFSRVL+TS++  L+  +
Sbjct:   142 LFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGE 201

Query:   210 D-WQSSVEECAKMVCHGQHTXXXXXXXXXXXXXESKGGSKVKRLAQEITKCAQQSGHDVT 268
             +  +  + E AKMVCHG+HT             E +GGS V+R+AQE+ + AQ+ GHD +
Sbjct:   202 ENLEKHLPEFAKMVCHGEHTYLFAQAMMSVLAQEEQGGSAVRRVAQEVQRFAQEKGHDAS 261

Query:   269 PIIMALNGAAFYPQANQALSSMISRNSLNP 298
              I +AL  AA YP+A QAL +M+S+ +LNP
Sbjct:   262 QITLALGTAASYPRACQALGAMLSKGALNP 291

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8IXH7	NELFD_HUMAN	No assigned EC number	0.5885	0.9177	0.9644	yes	N/A
Q922L6	NELFD_MOUSE	No assigned EC number	0.5903	0.9112	0.9560	yes	N/A
Q5RFA0	NELFD_PONAB	No assigned EC number	0.5885	0.9177	0.9644	yes	N/A
A5GFY4	NELFD_PIG	No assigned EC number	0.5862	0.9112	0.9576	yes	N/A
Q24134	NELFD_DROME	No assigned EC number	0.7344	0.8967	0.9619	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	620
pfam04858	582	pfam04858, TH1, TH1 protein	0.0

>gnl|CDD|218295 pfam04858, TH1, TH1 protein

 Score =  884 bits (2287), Expect = 0.0
 Identities = 360/584 (61%), Positives = 427/584 (73%), Gaps = 11/584 (1%)

Query: 1   MNDDYDDEQTHRWDQDMVDV----DSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFS 56
           M +DY  E T  WD+         D D   +  ENP  VL ECL +FST DYIMEP IF 
Sbjct: 1   MEEDY--EVTSGWDRSDGRGTAQGDDDARAEVDENPTAVLQECLRRFSTKDYIMEPSIFD 58

Query: 57  QLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMIL 116
            LKRYFQAGG PE VIELLS+NY+AVAQM NL+AEWLI+ GV+ T+VQAMVENHLK +I 
Sbjct: 59  DLKRYFQAGGAPETVIELLSENYRAVAQMTNLLAEWLIVTGVSPTKVQAMVENHLKTLIR 118

Query: 117 KTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGF 176
           K FDP KAD IFTEEGETPAWL  MI H TWR+L+Y LAEE P+CLMLNFTIKLISDAG 
Sbjct: 119 KRFDPNKADAIFTEEGETPAWLDGMIRHETWRALLYSLAEENPNCLMLNFTIKLISDAGM 178

Query: 177 QREITSISTAAQQIEVFSRVLKTSISNFLES-SDDWQSSVEECAKMVCHGQHTYVYSQVL 235
           Q EITS+STAAQQ EVFSRVL T I+  L S  DD + ++EE A MVCHG HTYV+ Q++
Sbjct: 179 QHEITSLSTAAQQFEVFSRVLATHIAGILVSGPDDVRRAIEELASMVCHGIHTYVFGQLM 238

Query: 236 LQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNS 295
           L VL  E  GG+   RL+QEI + A +     T I +AL  +A  PQA  AL+ M+SR +
Sbjct: 239 LAVLGQEEDGGTAAARLSQEIEEAAAKLHGAATVITLALATSAVDPQACYALADMLSRGA 298

Query: 296 LNPADITVLFRLYSSPDPPPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYAS 355
           LNPADITVL R+Y+S DPPP+DLIR P FL LL D LFK GVK+N  HK KY  LLAYA+
Sbjct: 299 LNPADITVLLRMYTSSDPPPVDLIRHPDFLYLLIDELFKWGVKINNRHKSKYFELLAYAA 358

Query: 356 SVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHSI-CNSSKSSNELIAEITTLFHCIRYPV 414
           SV E       K ++ NKD+LK+TI+AIEK H+I CN+ +  +ELIAE++TL++CIR+PV
Sbjct: 359 SVVETP---PNKDRNINKDELKSTIKAIEKAHAIICNAKRGKSELIAELSTLYNCIRFPV 415

Query: 415 VSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQD 474
           V  GVI WV   VTEPSYF+L T   P HLA+LDEV   H  L  +VL+L + LFES  D
Sbjct: 416 VGAGVIAWVRSAVTEPSYFRLVTNSNPVHLAVLDEVARKHVALQGQVLELLVALFESHGD 475

Query: 475 ELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAIT 534
           ELEILVQLE++KMLLDRMV LL RG VVPV+ Y  QCW+R DTDISLIRYFVTEVLE   
Sbjct: 476 ELEILVQLELKKMLLDRMVELLARGHVVPVITYACQCWRRLDTDISLIRYFVTEVLEIAG 535

Query: 535 PPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVQTLEHE 578
           PPY+ +FVQLFLP++EN+ I GTMRG+G++DPV EFIV      
Sbjct: 536 PPYSRDFVQLFLPLLENENIRGTMRGEGDSDPVDEFIVHCKRRY 579

TH1 is a highly conserved but uncharacterized metazoan protein. No homologue has been identified in Caenorhabditis elegans. TH1 binds specifically to A-Raf kinase. Length = 582

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	620
PF04858	584	TH1: TH1 protein; InterPro: IPR006942 TH1 is a hig	100.0

>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein

Probab=100.00  E-value=4.1e-179  Score=1476.26  Aligned_cols=575  Identities=61%  Similarity=1.042  Sum_probs=553.5

Q ss_pred             CCCcccccccCCCc---cCccC-CCCCCCCCCCCChHHHHHHHHhhcCCCCccccccHHHHHHHHHHcCCChHHHHHHHH
Q psy15691          1 MNDDYDDEQTHRWD---QDMVD-VDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLS   76 (620)
Q Consensus         1 ~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~e~~~~l~~~DaIMEp~i~~~ik~yi~~gG~P~~vv~~Ls   76 (620)
                      |++|||.++  +|+   |+.+. +++++.++.+++++++++||++.|++|||||||+|+++||+||++||+|++||++||
T Consensus         1 ~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~Imep~i~~~i~~y~~~gG~p~~vv~~Ls   78 (584)
T PF04858_consen    1 MEEDYEGDR--GWESSDGEGDDQEDDEEESEADEEPEEVLEECLRRLSQPDAIMEPSIFDTIKRYFRAGGDPEEVVELLS   78 (584)
T ss_pred             CCchhhhcc--ccccccCCCCcccCccccccCCCChHHHHHHHHHhcCCCCeeeCchHHHHHHHHHHCCCCHHHHHHHHH
Confidence            899999866  695   33322 344455555789999999999999999999999999999999999999999999999


Q ss_pred             hhhHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCCcchhhhhhccCCCChHHHHHHhcChhHHHHHHHHHH
Q psy15691         77 QNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAE  156 (620)
Q Consensus        77 ~~Y~G~aqm~~ll~~WL~~~g~~~~ev~~~~e~~Lk~li~k~FDp~kaD~ift~~~~~P~WL~~mi~~~~WRsliy~LaE  156 (620)
                      +||+|||||||||++||+++|+++++||+++++|||++|+|||||+|||+|||++|++|+||++||+||+||+|||+|||
T Consensus        79 ~~Y~g~aq~~~ll~~WL~~~~~~~~~v~~~~~~~lk~~i~~~FD~~k~D~ift~~~~~p~WL~~mi~~~~WR~liy~Lae  158 (584)
T PF04858_consen   79 ENYRGYAQMCNLLAEWLIDLGVSPEDVQEIVESHLKELIKKRFDPKKADTIFTEEGSTPAWLDEMIEHPRWRSLIYELAE  158 (584)
T ss_pred             HhcccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHhcCCCCChHHHHHhcCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCchhhHHHHHHHhhccchhhhhchhhHhhhHHHHHHHHHHHHHHHhcC-cchHHHhHHHHhhhhhcCchhHHHHHHH
Q psy15691        157 EYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLES-SDDWQSSVEECAKMVCHGQHTYVYSQVL  235 (620)
Q Consensus       157 ~~p~clmLnfaIk~IsdaG~q~EI~svstaa~~~~VF~rvL~~~i~~~l~~-~e~~~~~~~el~km~C~sehTYlyaQ~l  235 (620)
                      +||||+|||||||+|||||||+||+|++|||+||+||+|||+++|.+|+.. ++++++++++|+||||||||||+|||+|
T Consensus       159 ~~p~~l~L~faik~IsdaG~~~Ei~s~~taa~~~~VF~~vl~~~i~~~~~~~~d~~~~~~~~l~k~~C~sehTYlyaQ~l  238 (584)
T PF04858_consen  159 RHPDCLFLNFAIKLISDAGYQHEITSVSTAAQQFEVFSRVLKDSISRFLAAGEDELQEAIAELKKMCCHSEHTYLYAQAL  238 (584)
T ss_pred             HCCCCHHHHHHHHHHHHcchHHHHHhHHHHHHhHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhhcCCchHHHHHHH
Confidence            999999999999999999999999999999999999999999999999985 8999999999999999999999999999


Q ss_pred             HHHHhhccCCchHHHHHHHHHHHHHHhcCCCchhHHHHhcCCCCcccHHHHHHHHhccCCCChhhHHHHHHHhcCCCCCc
Q psy15691        236 LQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSLNPADITVLFRLYSSPDPPP  315 (620)
Q Consensus       236 L~~L~~e~~g~~~~~rlsQele~~A~~~g~~v~~i~~~l~~~~~yp~~~~ai~smLs~~~l~paDI~~Ly~~Y~~~~pPP  315 (620)
                      |+.|+|+.+|+++++||+||||++|+++|++|++++++|+|+++||++++|+++||++|++|||||++||++|++++|||
T Consensus       239 L~~L~~~~~~~~~~~rlsqELe~~A~~~~~~vt~i~~aL~~s~~~p~a~~ai~smLs~~~l~paDI~~Ly~~Y~~~~pPP  318 (584)
T PF04858_consen  239 LHELSQESDGGSAMRRLSQELEREAAKRGHDVTDITLALNGSSSYPEACQAIASMLSSNALNPADITKLYRMYSSPDPPP  318 (584)
T ss_pred             HHHHHhccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHhcCccCchHHHHHHHHHhcCCCCHHHHHHHHHHhccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchHHHHHHHHHhcCCCCCCCCCchhhHHHHHHhhhhcccccCccccccccCChHHHHHHHHHHHHHHHHhhcC-C
Q psy15691        316 IDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYLLAYASSVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHSICNSS-K  394 (620)
Q Consensus       316 v~lLR~P~~l~lLld~LF~pg~~in~e~r~kyi~LLAyAasV~e~~~~~~~~~~~~~~del~~T~~aie~a~~ic~~~-~  394 (620)
                      |+|||+|.|+++|+|+||+||.++|++||+||+|||||||||+|+++.++. ...+++||+++|++|||+||+||+.. +
T Consensus       319 V~lLR~P~~l~lLld~LF~pg~~i~~e~r~kyi~LLAYAasV~e~~~~~~~-~~~~~~del~~t~~ale~a~~ic~~~~~  397 (584)
T PF04858_consen  319 VELLRHPQFLDLLLDALFKPGSKINPEHRSKYIYLLAYAASVVETPAKNQP-DRSLNCDELKSTKQALEKAHAICCNAAR  397 (584)
T ss_pred             chhhcCHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHHHHcccccccCcc-cccccHHHHHHHHHHHHHHHHHhhcccc
Confidence            999999999999999999999999999999999999999999999887632 24679999999999999999997764 7


Q ss_pred             CchhHHHHHHHHhhhcccCccchhhHHHHHhhhcCCcccccccCCchhHHHHHHHHHHhcccchHHHHHHHHHHHhcccc
Q psy15691        395 SSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQD  474 (620)
Q Consensus       395 ~~~el~~el~~L~~~i~~PvVa~GVL~wv~~~l~~ps~f~~~~~~tp~~l~LLdeIa~~Hp~lr~~vL~lL~~l~e~~~~  474 (620)
                      |+++++++++.|++||+|||||+|||+||+++|++|+||+..++++|+||.||||||+|||.||+.||++|+++|+++++
T Consensus       398 g~~~~~~el~~L~~~i~~PvVa~GVL~wi~~~l~~~~~~~~~~~~~p~~L~LLdeIa~~Hp~lr~~vl~lL~~~le~~~~  477 (584)
T PF04858_consen  398 GSSELQAELPKLYSCIRYPVVAMGVLRWIESFLTDPSYFSSITELTPVHLALLDEIATRHPLLRPSVLDLLVRLLESEGD  477 (584)
T ss_pred             ccchhHHHHHHHHHHhCCChhhHHHHHHHHHHhcCcchhhhccccCchHHHHhhHHHhcCHhhHHHHHHHHHHHHHccCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhhcCCCchHHHHHHHHHHHhhcCCCCCHHHHHhhhhhhcCccc
Q psy15691        475 ELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEI  554 (620)
Q Consensus       475 el~~l~~lelkr~llD~~V~Lls~G~VlPVl~~i~~~~~~~~lD~SLIRyFv~eVLeii~PPYS~eFv~~flpll~~~~i  554 (620)
                      ++++++++|+||++|||||||+++|||+|||+||++||.+|++|+|||||||+||||+|+||||++|+++|+|||+|++|
T Consensus       478 ~l~~l~~le~kr~ilD~~V~L~s~G~VlPVl~~i~~~~~~~~iD~SLiRyFv~eVLeii~PPYS~~Fv~~~l~ll~~~~i  557 (584)
T PF04858_consen  478 ELDILVQLELKRTILDRMVHLLSRGYVLPVLEYIRKCWARGDIDPSLIRYFVTEVLEIIGPPYSPEFVQLFLPLLENAEI  557 (584)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhCCeeehHHHHHHHHHhccCCcHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCcHHHHHHHhhccc
Q psy15691        555 TGTMRGDGENDPVSEFIVQTLEHE  578 (620)
Q Consensus       555 ~~~l~~~~~~~~v~eFi~~c~~~~  578 (620)
                      +|+|++++++|+|++|++|||++-
T Consensus       558 ~~~~~~~~~~~~v~~F~~~c~~~~  581 (584)
T PF04858_consen  558 RGGMRTEGDNDPVSEFIVHCKRNY  581 (584)
T ss_pred             hhhhccCCCCchHHHHHHHHHhcc
Confidence            999999999999999999999873

No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	620
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.8 bits (175), Expect = 4e-13
 Identities = 76/518 (14%), Positives = 166/518 (32%), Gaps = 138/518 (26%)

Query: 28  PMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQV--IELLSQNYKAVAQM 85
               P   L + L +      ++  G+           G+ +    +++   +YK   +M
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGV----------LGSGKTWVALDVC-LSYKVQCKM 180

Query: 86  ANLVAEWLILGGVNVTE-VQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEH 144
              +  WL L   N  E V  M++      +L   DP      +T   +  + +   I  
Sbjct: 181 DFKIF-WLNLKNCNSPETVLEMLQK-----LLYQIDPN-----WTSRSDHSSNIKLRIHS 229

Query: 145 PTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVF---SRVLKT-- 199
                     ++ Y +CL       L+        + +    A+    F    ++L T  
Sbjct: 230 IQAELRRLLKSKPYENCL-------LVLL-----NVQN----AKAWNAFNLSCKILLTTR 273

Query: 200 --SISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQEIT 257
              +++FL ++     S++  +  +   +       +LL+ L        + + L +E+ 
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVK----SLLLKYL------DCRPQDLPREVL 323

Query: 258 KCAQQSGHDVTPIIMALNGAA---------FYPQANQ-ALSSMI--SRNSLNPADITVLF 305
                      P  +++   +          +   N   L+++I  S N L PA+   +F
Sbjct: 324 TTN--------PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 306 RLYS--SPDPP-PIDLIRI------PQFLELLTDSLFKPG-VKLNPEHKPKYIYLLAYAS 355
              S   P    P  L+ +         + ++ + L K   V+  P+     I  +    
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL-- 433

Query: 356 SVYEVSTGKKTKQKSFNKDDL-KTTIQAIEKVHSICNSSKSSNEL--------------- 399
                    + K K  N+  L ++ +       +  +       L               
Sbjct: 434 ---------ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 400 -IAEITTLFHC-----------IRYPVVSVGVIRWVECTVTE-PSYFKLCTEHTPTHLAL 446
              E  TLF             IR+   +      +  T+ +   Y     ++ P +  L
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544

Query: 447 LDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEM 484
           ++ ++    FL     ++   L  SK  +   L+++ +
Sbjct: 545 VNAIL---DFLP----KIEENLICSKYTD---LLRIAL 572

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 6e-10
 Identities = 65/466 (13%), Positives = 138/466 (29%), Gaps = 139/466 (29%)

Query: 185 TAAQQIEVFSRVLKTSISNFLESSD-----DWQSSV---EECAKMVCHGQHTYVYSQVLL 236
           T   Q + +  +L      F+++ D     D   S+   EE   ++         S  L 
Sbjct: 11  TGEHQYQ-YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD---AVSGTLR 66

Query: 237 QVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNSL 296
              +L SK    V++  +E               ++ +N    Y      L S I     
Sbjct: 67  LFWTLLSKQEEMVQKFVEE---------------VLRIN----YK----FLMSPIKTEQR 103

Query: 297 NPADITVLF-----RLYSSPDP-PPIDLIRIPQFLELLTDSLFKPGVKLNPEHKPKYIYL 350
            P+ +T ++     RLY+        ++ R+  +L+ L  +L     +L P    K + +
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK-LRQALL----ELRPA---KNVLI 155

Query: 351 ----------LA------------YASSVYEVSTGKKTKQKSFNKDDLKTTIQAIEKVHS 388
                     +A                ++ ++       ++  +   K   Q      S
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 389 ICNSSKS----SNELIAEITTLFHCIRYP--------VVSVGVIRW--VECT--VT--EP 430
             + S +     + + AE+  L     Y         V +        + C   +T    
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 431 SYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRK---- 486
                 +  T TH++L    +   T    +V  L ++  + +  +L      E+      
Sbjct: 276 QVTDFLSAATTTHISLDHHSM---TLTPDEVKSLLLKYLDCRPQDL----PREVLTTNPR 328

Query: 487 ---MLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTD--ISLIRYFVTEVLEAITPPYTPEF 541
              ++ + + + L               W+  + D   ++I       L  + P    E+
Sbjct: 329 RLSIIAESIRDGLAT------WDN----WKHVNCDKLTTIIESS----LNVLEP---AEY 371

Query: 542 VQLF--LPIVENDEITGTMRGDGENDPVSEFIVQTLEHEWHQLEDD 585
            ++F  L +                  +       L   W  +   
Sbjct: 372 RKMFDRLSVFPPSA------------HIPT---ILLSLIWFDVIKS 402

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00