Psyllid ID: psy16152

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
MSWVVDSTLNWFQYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMWRADKSKSLTSAGEAFVNELYSKRDEYIANPQCNLQHGI
ccccccccHHHHHHHHHHHccccccccEEEEEccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHHHHHccccccccccHHHHHccccccccccccEEEcccccHHHHHHHHHHHHccEEEEcccccccccHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
ccHccccHHHHHHHHHHHHccccccccEEEEEEccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccHHHccHHHHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHHHHHHHccccHHHccHHHHHccccccccccccEEEEEcccccccccccHHHcccEEEEccccHHHccHHHHHHHHHHHHHHHHHHHHHHcccccHHccHHHHHHHHHHccHHHHHccccccccccc
MSWVVDSTLNWFQYAIIKLLkkghvpkhIAFIMDGNRRyakrsnaktieghsKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGlrtnkitnedvTMDLFDkclytgtspepdliirtsgetrlsdfmlvqskssfLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMWRADKSKSLTSAGEAFVNELYSKrdeyianpqcnlqhgi
MSWVVDSTLNWFQYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIenfkrteeevngLMDLARAKFKRLieekdklnekgiririigniellPSDLIASFKEAMHITKDNTEGFLNVAFSYtsrdemvetsrilidglrtnkitnedvTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMWRADKSKSLTSAGEAFVNELYSkrdeyianpqcnlqhgi
MSWVVDSTLNWFQYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMWRADKSKSLTSAGEAFVNELYSKRDEYIANPQCNLQHGI
**WVVDSTLNWFQYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMWRADK***LTSAGEAFVNELYSKRDEYI***********
*S***DSTLNWFQYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDF*************************************C******
MSWVVDSTLNWFQYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMWRADKSKSLTSAGEAFVNELYSKRDEYIANPQCNLQHGI
*SWVVDSTLNWFQYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMWRADKSKSLTSAGEAFVNELYSKRDEYIANPQCNL****
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MSWVVDSTLNWFQYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLxxxxxxxxxxxxxxxxxxxxxGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMWRADKSKSLTSAGEAFVNELYSKRDEYIANPQCNLQHGI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query295 2.2.26 [Sep-21-2011]
Q86SQ9333 Dehydrodolichyl diphospha yes N/A 0.932 0.825 0.492 1e-76
Q99KU1333 Dehydrodolichyl diphospha yes N/A 0.932 0.825 0.482 7e-75
O14171264 Uncharacterized protein C yes N/A 0.816 0.912 0.429 2e-52
O26334255 Tritrans,polycis-undecapr yes N/A 0.8 0.925 0.420 2e-52
Q8TXA7271 Tritrans,polycis-undecapr yes N/A 0.772 0.841 0.419 4e-50
Q8U0I8264 Tritrans,polycis-undecapr yes N/A 0.806 0.901 0.380 1e-47
Q9V157264 Tritrans,polycis-undecapr yes N/A 0.806 0.901 0.401 1e-47
O59258264 Tritrans,polycis-undecapr yes N/A 0.806 0.901 0.393 1e-46
Q8RA26247 Isoprenyl transferase OS= yes N/A 0.779 0.931 0.399 2e-46
Q5JGE1264 Tritrans,polycis-undecapr yes N/A 0.8 0.893 0.375 6e-46
>sp|Q86SQ9|DHDDS_HUMAN Dehydrodolichyl diphosphate synthase OS=Homo sapiens GN=DHDDS PE=1 SV=3 Back     alignment and function desciption
 Score =  286 bits (732), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 140/284 (49%), Positives = 186/284 (65%), Gaps = 9/284 (3%)

Query: 1   MSWVVDSTLNWFQYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAE 60
           MSW+ +  L+ ++     ++K G +PKHIAFIMDGNRRYAK+   +  EGHS+GF+KLAE
Sbjct: 1   MSWIKEGELSLWERFCANIIKAGPMPKHIAFIMDGNRRYAKKCQVERQEGHSQGFNKLAE 60

Query: 61  TLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRI 120
           TL+WCL+LG+ EVTVYAFSIENFKR++ EV+GLMDLAR KF RL+EEK+KL + G+ IR+
Sbjct: 61  TLRWCLNLGILEVTVYAFSIENFKRSKSEVDGLMDLARQKFSRLMEEKEKLQKHGVCIRV 120

Query: 121 IGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITN 180
           +G++ LLP DL     +A+  TK+  + FLNV F+YTSR E+    R +  G+    +  
Sbjct: 121 LGDLHLLPLDLQELIAQAVQATKNYNKCFLNVCFAYTSRHEISNAVREMAWGVEQGLLDP 180

Query: 181 EDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNL 240
            D++  L DKCLYT  SP PD++IRTSGE RLSDF+L Q+  S L F   LWPE+T WNL
Sbjct: 181 SDISESLLDKCLYTNRSPHPDILIRTSGEVRLSDFLLWQTSHSCLVFQPVLWPEYTFWNL 240

Query: 241 INAVFAFQY---------DFYTNEMWRADKSKSLTSAGEAFVNE 275
             A+  FQ          D Y  E  R    +   +  E  + E
Sbjct: 241 FEAILQFQMNHSVLQKARDMYAEERKRQQLERDQATVTEQLLRE 284
Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: -
>sp|Q99KU1|DHDDS_MOUSE Dehydrodolichyl diphosphate synthase OS=Mus musculus GN=Dhdds PE=2 SV=1 Back     alignment and function description
>sp|O14171|YE54_SCHPO Uncharacterized protein C4D7.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4D7.04c PE=3 SV=2 Back     alignment and function description
>sp|O26334|UPPS_METTH Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=uppS PE=3 SV=1 Back     alignment and function description
>sp|Q8TXA7|UPPS_METKA Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=uppS PE=3 SV=1 Back     alignment and function description
>sp|Q8U0I8|UPPS_PYRFU Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=uppS PE=3 SV=1 Back     alignment and function description
>sp|Q9V157|UPPS_PYRAB Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=uppS PE=3 SV=1 Back     alignment and function description
>sp|O59258|UPPS_PYRHO Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=uppS PE=3 SV=1 Back     alignment and function description
>sp|Q8RA26|ISPT_THETN Isoprenyl transferase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=uppS PE=3 SV=1 Back     alignment and function description
>sp|Q5JGE1|UPPS_PYRKO Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=uppS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
307214675304 Dehydrodolichyl diphosphate synthase [Ha 0.959 0.930 0.535 4e-88
307210588297 Dehydrodolichyl diphosphate synthase [Ha 0.969 0.962 0.529 2e-87
156544802300 PREDICTED: dehydrodolichyl diphosphate s 0.949 0.933 0.540 7e-86
240849357287 dehydrodolichyl diphosphate synthase-lik 0.945 0.972 0.532 1e-84
332023727295 Dehydrodolichyl diphosphate synthase [Ac 0.962 0.962 0.529 3e-84
350413088295 PREDICTED: dehydrodolichyl diphosphate s 0.942 0.942 0.505 5e-84
157112048318 dehydrodolichyl diphosphate synthase (de 0.874 0.811 0.553 1e-83
170031397317 dehydrodolichyl diphosphate synthase [Cu 0.837 0.779 0.570 2e-82
170031395322 conserved hypothetical protein [Culex qu 0.837 0.767 0.570 3e-82
312380210331 hypothetical protein AND_07782 [Anophele 0.884 0.788 0.558 4e-82
>gi|307214675|gb|EFN89604.1| Dehydrodolichyl diphosphate synthase [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 152/284 (53%), Positives = 206/284 (72%), Gaps = 1/284 (0%)

Query: 1   MSWVVDSTLNWFQYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAE 60
           MSW+   TLNWFQ+  +K+++ GHVPKH+AFIMDGNRRYA + +   +EGH+KGFDKLAE
Sbjct: 1   MSWIKKHTLNWFQFLALKIMRTGHVPKHVAFIMDGNRRYANKKHVAKVEGHTKGFDKLAE 60

Query: 61  TLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRI 120
           TL WC+DLG+ EVTVYAFSIENFKR +EEV+ LM+LA+ KF+RL+EEKDKL E+GI +RI
Sbjct: 61  TLSWCMDLGITEVTVYAFSIENFKRNKEEVDALMELAKQKFERLLEEKDKLMERGICVRI 120

Query: 121 IGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITN 180
           IGN+ L+P D+     + M ITKDN + FLNVAF+YTSRDE+    + ++ G++ N+I  
Sbjct: 121 IGNLSLIPEDICKLIAKIMTITKDNNKAFLNVAFAYTSRDEITCAIKDIVKGVKHNEIVP 180

Query: 181 EDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNL 240
           ED+  DL   CLYT  SP+PDL+IRTSGE RLSDF++ Q   + +YF + LWPEFT W+ 
Sbjct: 181 EDINEDLISNCLYTYNSPDPDLLIRTSGEVRLSDFLMWQISDTCVYFANVLWPEFTIWDF 240

Query: 241 INAVFAFQYDFY-TNEMWRADKSKSLTSAGEAFVNELYSKRDEY 283
           ++A+F +Q  +     + R   S S+T    AF  +   K+ ++
Sbjct: 241 LSAIFYYQRCYSDLQRVTRIQNSNSITHNYRAFTYQFNHKKKDF 284

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307210588|gb|EFN87056.1| Dehydrodolichyl diphosphate synthase [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|156544802|ref|XP_001606412.1| PREDICTED: dehydrodolichyl diphosphate synthase-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|240849357|ref|NP_001155508.1| dehydrodolichyl diphosphate synthase-like [Acyrthosiphon pisum] gi|239789978|dbj|BAH71580.1| ACYPI003077 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|332023727|gb|EGI63951.1| Dehydrodolichyl diphosphate synthase [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|350413088|ref|XP_003489875.1| PREDICTED: dehydrodolichyl diphosphate synthase-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|157112048|ref|XP_001657391.1| dehydrodolichyl diphosphate synthase (dedol-pp synthase) [Aedes aegypti] gi|108878222|gb|EAT42447.1| AAEL006039-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|170031397|ref|XP_001843572.1| dehydrodolichyl diphosphate synthase [Culex quinquefasciatus] gi|167869832|gb|EDS33215.1| dehydrodolichyl diphosphate synthase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|170031395|ref|XP_001843571.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167869831|gb|EDS33214.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|312380210|gb|EFR26273.1| hypothetical protein AND_07782 [Anopheles darlingi] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
FB|FBgn0029980300 CG10778 [Drosophila melanogast 0.935 0.92 0.503 3.3e-70
UNIPROTKB|Q86SQ9333 DHDDS "Dehydrodolichyl diphosp 0.932 0.825 0.494 8.9e-70
UNIPROTKB|Q58DN9316 DHDDS "Dehydrodolichyl diphosp 0.840 0.784 0.544 3e-69
UNIPROTKB|E1C3V5333 DHDDS "Uncharacterized protein 0.881 0.780 0.507 1.3e-68
UNIPROTKB|J9P7C8333 DHDDS "Uncharacterized protein 0.932 0.825 0.487 3.5e-68
MGI|MGI:1914672333 Dhdds "dehydrodolichyl diphosp 0.932 0.825 0.483 1.2e-67
RGD|1311560333 Dhdds "dehydrodolichyl diphosp 0.932 0.825 0.480 1.2e-67
ZFIN|ZDB-GENE-040426-2236335 dhdds "dehydrodolichyl diphosp 0.840 0.740 0.508 1.2e-65
UNIPROTKB|D4A6Z6299 Dhdds "Protein Dhdds" [Rattus 0.488 0.481 0.555 1.3e-61
UNIPROTKB|Q5T0A3216 DHDDS "Dehydrodolichyl diphosp 0.379 0.518 0.633 1.1e-60
FB|FBgn0029980 CG10778 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 142/282 (50%), Positives = 194/282 (68%)

Query:     1 MSWVVDSTLNWFQYAIIKLLKK-GHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLA 59
             MSWV D    W +   ++ L+  G++P H+AF+MDGNRR+A+      IEGHS+GF+KLA
Sbjct:     1 MSWVSDYKYTWTERIAMRTLRACGYIPHHVAFVMDGNRRFARSQQIDKIEGHSRGFEKLA 60

Query:    60 ETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIR 119
             + L+WCLD+GVREVT +AFSIENFKR+ EEV GL +LAR KF RL+EE  +L+E GIRIR
Sbjct:    61 DCLRWCLDVGVREVTTFAFSIENFKRSNEEVEGLFNLAREKFARLLEETARLDEHGIRIR 120

Query:   120 IIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVET-SRILIDGLRTNKI 178
             +IGNIELLP DL      AM  T+ N + FLNVAF+YTSRDE+ +    IL  G  +  +
Sbjct:   121 VIGNIELLPHDLQKLVASAMLSTERNDKLFLNVAFAYTSRDEITQAVETILRHG--SQDL 178

Query:   179 TNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAW 238
               ED++  L ++CLYT  SP PDL+ RTSGETRLSDFM+ Q  +S LYF + LWP+ T W
Sbjct:   179 AGEDISERLLEECLYTRHSPPPDLVFRTSGETRLSDFMMWQLSTSVLYFSNVLWPQITFW 238

Query:   239 NLINAVFAFQYDFYTNEMWRADKSKSLTSAGEAFVNELYSKR 280
             + + ++ A+Q D +  + +R  +++ + S   A   + YS+R
Sbjct:   239 HFLASILAYQRDRWQLDDFR--RAERMQSCQLAKATDFYSER 278
GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA
GO:0006911 "phagocytosis, engulfment" evidence=IMP
UNIPROTKB|Q86SQ9 DHDDS "Dehydrodolichyl diphosphate synthase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DN9 DHDDS "Dehydrodolichyl diphosphate synthase isoform a" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1C3V5 DHDDS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|J9P7C8 DHDDS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1914672 Dhdds "dehydrodolichyl diphosphate synthase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311560 Dhdds "dehydrodolichyl diphosphate synthase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2236 dhdds "dehydrodolichyl diphosphate synthase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|D4A6Z6 Dhdds "Protein Dhdds" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5T0A3 DHDDS "Dehydrodolichyl diphosphate synthase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5SH15ISPT_THET82, ., 5, ., 1, ., 3, 10.36650.82370.9239yesN/A
Q98MB9ISPT_RHILO2, ., 5, ., 1, ., 3, 10.40540.74230.8975yesN/A
Q732P6ISPT_BACC12, ., 5, ., 1, ., 3, 10.38880.78300.8953yesN/A
P0DH33ISPT_STRPQ2, ., 5, ., 1, ., 3, 10.38960.75930.8995yesN/A
Q6HEZ2ISPT_BACHK2, ., 5, ., 1, ., 3, 10.38880.78300.8953yesN/A
Q9HXY2UPPS_PSEAE2, ., 5, ., 1, ., 3, 10.38860.70500.8286yesN/A
Q8TXA7UPPS_METKA2, ., 5, ., 1, ., 8, 90.41920.77280.8413yesN/A
Q5JGE1UPPS_PYRKO2, ., 5, ., 1, ., 8, 90.37550.80.8939yesN/A
Q6KZ89UPPS_PICTO2, ., 5, ., 1, ., 8, 90.37970.80.9254yesN/A
Q49X45ISPT_STAS12, ., 5, ., 1, ., 3, 10.37770.75250.8740yesN/A
Q97I62ISPT_CLOAB2, ., 5, ., 1, ., 3, 10.39910.75250.8638yesN/A
Q8U0I8UPPS_PYRFU2, ., 5, ., 1, ., 8, 90.38070.80670.9015yesN/A
Q81WL2ISPT_BACAN2, ., 5, ., 1, ., 3, 10.38880.78300.8953yesN/A
Q9K1G6ISPT_NEIMB2, ., 5, ., 1, ., 3, 10.38960.74570.8870yesN/A
Q8S2T1DDPS6_ARATH2, ., 5, ., 1, ., -0.35070.84060.8406yesN/A
Q895K8ISPT_CLOTE2, ., 5, ., 1, ., 3, 10.36440.75250.8705yesN/A
Q9ZEJ7ISPT_ANAVT2, ., 5, ., 1, ., 3, 10.38260.76270.9036yesN/A
Q86SQ9DHDDS_HUMAN2, ., 5, ., 1, ., -0.49290.93220.8258yesN/A
Q5V1I1UPPS_HALMA2, ., 5, ., 1, ., 8, 90.34550.82370.7993yesN/A
Q82IC1ISPT1_STRAW2, ., 5, ., 1, ., 3, 10.36920.77620.8910yesN/A
Q8A1E0ISPT_BACTN2, ., 5, ., 1, ., 3, 10.3750.76940.9303yesN/A
Q9KA67ISPT_BACHD2, ., 5, ., 1, ., 3, 10.38860.76610.8828yesN/A
Q7NPE7ISPT_GLOVI2, ., 5, ., 1, ., 3, 10.37820.76270.9036yesN/A
Q9V157UPPS_PYRAB2, ., 5, ., 1, ., 8, 90.40160.80670.9015yesN/A
O26334UPPS_METTH2, ., 5, ., 1, ., 8, 90.42010.80.9254yesN/A
Q8RA26ISPT_THETN2, ., 5, ., 1, ., 3, 10.39910.77960.9311yesN/A
O29049UPPS_ARCFU2, ., 5, ., 1, ., 8, 90.38490.80330.9442yesN/A
Q8TJQ7UPPS_METAC2, ., 5, ., 1, ., 8, 90.36900.82030.8120yesN/A
Q97B58UPPS_THEVO2, ., 5, ., 1, ., 8, 90.38420.78300.8953yesN/A
P58563ISPT1_NOSS12, ., 5, ., 1, ., 3, 10.38260.76270.9036yesN/A
Q9HKQ0UPPS_THEAC2, ., 5, ., 1, ., 8, 90.37340.78640.8992yesN/A
Q8XJQ9ISPT_CLOPE2, ., 5, ., 1, ., 3, 10.40.76940.8972yesN/A
P35196RER2_YEAST2, ., 5, ., 1, ., 8, 70.37640.82030.8461yesN/A
Q9JX35ISPT_NEIMA2, ., 5, ., 1, ., 3, 10.38960.74570.8870yesN/A
Q819Y1ISPT_BACCR2, ., 5, ., 1, ., 3, 10.38460.78300.8953yesN/A
Q8PZ76UPPS_METMA2, ., 5, ., 1, ., 8, 90.38860.75590.7483yesN/A
Q58767UPPS_METJA2, ., 5, ., 1, ., 8, 90.39340.81690.8607yesN/A
O87197ISPT_THET22, ., 5, ., 1, ., 3, 10.36650.82370.9239yesN/A
Q8UFL9ISPT_AGRT52, ., 5, ., 1, ., 3, 10.36320.74570.8906yesN/A
Q99KU1DHDDS_MOUSE2, ., 5, ., 1, ., -0.48230.93220.8258yesN/A
O14171YE54_SCHPONo assigned EC number0.42970.81690.9128yesN/A
O59258UPPS_PYRHO2, ., 5, ., 1, ., 8, 90.39330.80670.9015yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.5.1.310.824
3rd Layer2.5.10.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
pfam01255222 pfam01255, Prenyltransf, Putative undecaprenyl dip 4e-99
cd00475221 cd00475, CIS_IPPS, Cis (Z)-Isoprenyl Diphosphate S 6e-98
COG0020245 COG0020, UppS, Undecaprenyl pyrophosphate synthase 3e-89
TIGR00055226 TIGR00055, uppS, undecaprenyl diphosphate synthase 2e-76
PRK14830251 PRK14830, PRK14830, undecaprenyl pyrophosphate syn 6e-73
PRK14836253 PRK14836, PRK14836, undecaprenyl pyrophosphate syn 2e-62
PRK14831249 PRK14831, PRK14831, undecaprenyl pyrophosphate syn 2e-60
PRK14834249 PRK14834, PRK14834, undecaprenyl pyrophosphate syn 6e-59
PRK14835275 PRK14835, PRK14835, undecaprenyl pyrophosphate syn 2e-56
PRK14828256 PRK14828, PRK14828, undecaprenyl pyrophosphate syn 2e-56
PRK14832253 PRK14832, PRK14832, undecaprenyl pyrophosphate syn 9e-53
PRK14829243 PRK14829, PRK14829, undecaprenyl pyrophosphate syn 2e-50
PRK14841233 PRK14841, PRK14841, undecaprenyl pyrophosphate syn 1e-49
PRK14838242 PRK14838, PRK14838, undecaprenyl pyrophosphate syn 4e-48
PRK14840250 PRK14840, PRK14840, undecaprenyl pyrophosphate syn 4e-47
PRK14839239 PRK14839, PRK14839, undecaprenyl pyrophosphate syn 2e-43
PRK14833233 PRK14833, PRK14833, undecaprenyl pyrophosphate syn 3e-42
PRK14827296 PRK14827, PRK14827, undecaprenyl pyrophosphate syn 4e-39
PRK14842241 PRK14842, PRK14842, undecaprenyl pyrophosphate syn 1e-38
PRK14837230 PRK14837, PRK14837, undecaprenyl pyrophosphate syn 4e-32
PRK10240229 PRK10240, PRK10240, undecaprenyl pyrophosphate syn 7e-31
PTZ00349322 PTZ00349, PTZ00349, dehydrodolichyl diphosphate sy 2e-27
>gnl|CDD|216392 pfam01255, Prenyltransf, Putative undecaprenyl diphosphate synthase Back     alignment and domain information 
 Score =  289 bits (743), Expect = 4e-99
 Identities = 99/217 (45%), Positives = 148/217 (68%), Gaps = 3/217 (1%)

Query: 32  IMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVN 91
           IMDGNRR+AK+      EGH  G + + E L+WCL+LG++ +T+YAFS EN+KR +EEV+
Sbjct: 1   IMDGNRRWAKKRGLPRTEGHRAGAEAVREILEWCLELGIKYLTLYAFSTENWKRPKEEVD 60

Query: 92  GLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLN 151
            LM+L   K +RL+E    L++ G+R+R+IG++ LLP DL  + ++A   TK+NT   LN
Sbjct: 61  FLMELLERKLRRLLE---DLHKNGVRVRVIGDLSLLPEDLRKAIEDAEEATKNNTGLTLN 117

Query: 152 VAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETR 211
           +A +Y  RDE+V+  + L   +   K++ ED+  ++ +K LYT   P+PDL+IRTSGE R
Sbjct: 118 IALNYGGRDEIVDAVKRLARDVADGKLSPEDIDEEVIEKYLYTSDLPDPDLLIRTSGEKR 177

Query: 212 LSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQ 248
           LS+F+L QS  + LYF   LWP+FT  +L+ A+  +Q
Sbjct: 178 LSNFLLWQSAYAELYFTDTLWPDFTKEDLLRAIRDYQ 214

Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase. Length = 222
>gnl|CDD|238265 cd00475, CIS_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates Back     alignment and domain information
>gnl|CDD|223099 COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|129165 TIGR00055, uppS, undecaprenyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|184840 PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237831 PRK14836, PRK14836, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|184841 PRK14831, PRK14831, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237829 PRK14834, PRK14834, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237830 PRK14835, PRK14835, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237825 PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237827 PRK14832, PRK14832, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237826 PRK14829, PRK14829, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173302 PRK14841, PRK14841, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|184846 PRK14838, PRK14838, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173301 PRK14840, PRK14840, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237832 PRK14839, PRK14839, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237828 PRK14833, PRK14833, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173288 PRK14827, PRK14827, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173303 PRK14842, PRK14842, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173298 PRK14837, PRK14837, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|182326 PRK10240, PRK10240, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|185571 PTZ00349, PTZ00349, dehydrodolichyl diphosphate synthetase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 295
PRK14832253 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14837230 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14842241 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14831249 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14840250 undecaprenyl pyrophosphate synthase; Provisional 100.0
TIGR00055226 uppS undecaprenyl diphosphate synthase. Alternate 100.0
PRK14836253 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14835275 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14828256 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14829243 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14838242 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14834249 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14830251 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14841233 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14833233 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14827296 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14839239 undecaprenyl pyrophosphate synthase; Provisional 100.0
cd00475221 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases ( 100.0
PTZ00349322 dehydrodolichyl diphosphate synthetase; Provisiona 100.0
COG0020245 UppS Undecaprenyl pyrophosphate synthase [Lipid me 100.0
KOG1602|consensus271 100.0
PRK10240229 undecaprenyl pyrophosphate synthase; Provisional 100.0
PF01255223 Prenyltransf: Putative undecaprenyl diphosphate sy 100.0
KOG2818|consensus263 99.91
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.9e-84  Score=590.82  Aligned_cols=238  Identities=36%  Similarity=0.604  Sum_probs=229.8

Q ss_pred             HhcCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHH
Q psy16152         19 LLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLAR   98 (295)
Q Consensus        19 ~l~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~   98 (295)
                      .+..+++|+|||||||||||||+++|++..+||++|++++.++++||.++||++||||+||+|||+||++||+.||+++.
T Consensus        12 ~~~~~~iP~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm~L~~   91 (253)
T PRK14832         12 DLDPQKIPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLMLLFE   91 (253)
T ss_pred             cCCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHH
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCC
Q psy16152         99 AKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKI  178 (295)
Q Consensus        99 ~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l  178 (295)
                      +++.+..   +.+.++||+|+++||++.||+++++.++++++.|++|++++||||++||||+||++|++++++++++|.+
T Consensus        92 ~~l~~~~---~~~~~~~irv~~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~~~~~v~~g~~  168 (253)
T PRK14832         92 RLLRREL---AQMHREGVRISFIGDLSALPKSLQTEMERSMTETLNNQAIHFTVAVNYGSRNEITRACRQVAELVQQGKL  168 (253)
T ss_pred             HHHHHHH---HHHHhcCCEEEEEeCchhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHhCCC
Confidence            9997653   4578899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhcccccc
Q psy16152        179 TNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMWR  258 (295)
Q Consensus       179 ~~~dI~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk~~  258 (295)
                      ++++||++.|+++|+++++||||||||||||+|||||||||++||||||++++||||+..||.+||.+||+|++|||++.
T Consensus       169 ~~~~i~e~~i~~~L~~~~~Pd~DLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~df~~al~~y~~R~RRfG~~~  248 (253)
T PRK14832        169 SADAVNEQLVEQHLYTADTPPPDLLIRTSGEMRLSNFLLWQMAYTEMYFTDILWPDFDRAAFHQALLSYQKRDRRFGQVK  248 (253)
T ss_pred             ChhhCCHHHHHHhhCcCCCCCCCEEEECCCcccccCcHHHHHhheEEEECCCCCCcCCHHHHHHHHHHHHhccccCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999975


Q ss_pred             c
Q psy16152        259 A  259 (295)
Q Consensus       259 ~  259 (295)
                      .
T Consensus       249 ~  249 (253)
T PRK14832        249 A  249 (253)
T ss_pred             c
Confidence            3

>PRK14837 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>TIGR00055 uppS undecaprenyl diphosphate synthase Back     alignment and domain information
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates Back     alignment and domain information
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional Back     alignment and domain information
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism] Back     alignment and domain information
>KOG1602|consensus Back     alignment and domain information
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2 Back     alignment and domain information
>KOG2818|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
1f75_A249 Crystal Structure Of Undecaprenyl Diphosphate Synth 8e-37
4h8e_A256 Structure Of S. Aureus Undecaprenyl Diphosphate Syn 6e-35
2vfw_A227 Rv1086 Native Length = 227 2e-31
2vg1_A228 Rv1086 E,E-Farnesyl Diphosphate Complex Length = 22 2e-31
2d2r_A245 Crystal Structure Of Helicobacter Pylori Undecapren 1e-28
1ueh_A253 E. Coli Undecaprenyl Pyrophosphate Synthase In Comp 5e-28
1x08_A253 Crystal Structure Of D26a Mutant Upps In Complex Wi 4e-27
2vg2_A284 Rv2361 With Ipp Length = 284 1e-26
1jp3_A253 Structure Of E.Coli Undecaprenyl Pyrophosphate Synt 3e-26
3ugs_B225 Crystal Structure Of A Probable Undecaprenyl Diphos 2e-20
>pdb|1F75|A Chain A, Crystal Structure Of Undecaprenyl Diphosphate Synthase From Micrococcus Luteus B-P 26 Length = 249 Back     alignment and structure 
Iteration: 1

 Score =  150 bits (379), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 131/229 (57%), Gaps = 3/229 (1%)
Query: 20  LKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFS 79
           +    +PKHIA IMDGN R+AK+     I+GH +G   + +  ++  DLGV+ +T+YAFS
Sbjct: 15  INAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFS 74
Query: 80  IENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAM 139
            EN+ R ++EVN LM L        + E   L EK +++  IG I+ LP     +  EA 
Sbjct: 75  TENWSRPKDEVNYLMKLPGDFLNTFLPE---LIEKNVKVETIGFIDDLPDHTKKAVLEAK 131
Query: 140 HITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPE 199
             TK NT   L  A +Y  R E++   +++ +  ++ +I+ ++++   F++ L+T   P+
Sbjct: 132 EKTKHNTGLTLVFALNYGGRKEIISAVQLIAERYKSGEISLDEISETHFNEYLFTANMPD 191
Query: 200 PDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQ 248
           P+L+IRTSGE RLS+F++ Q   S   F  + WP+F   +L   +  +Q
Sbjct: 192 PELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDFNEESLAQCISIYQ 240
>pdb|4H8E|A Chain A, Structure Of S. Aureus Undecaprenyl Diphosphate Synthase In Complex With Fpp And Sulfate Length = 256 Back     alignment and structure
>pdb|2VFW|A Chain A, Rv1086 Native Length = 227 Back     alignment and structure
>pdb|2VG1|A Chain A, Rv1086 E,E-Farnesyl Diphosphate Complex Length = 228 Back     alignment and structure
>pdb|2D2R|A Chain A, Crystal Structure Of Helicobacter Pylori Undecaprenyl Pyrophosphate Synthase Length = 245 Back     alignment and structure
>pdb|1UEH|A Chain A, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex With Triton X- 100, Magnesium And Sulfate Length = 253 Back     alignment and structure
>pdb|1X08|A Chain A, Crystal Structure Of D26a Mutant Upps In Complex With Mg, Ipp And Fspp Length = 253 Back     alignment and structure
>pdb|2VG2|A Chain A, Rv2361 With Ipp Length = 284 Back     alignment and structure
>pdb|1JP3|A Chain A, Structure Of E.Coli Undecaprenyl Pyrophosphate Synthase Length = 253 Back     alignment and structure
>pdb|3UGS|B Chain B, Crystal Structure Of A Probable Undecaprenyl Diphosphate Synthase (Upps) From Campylobacter Jejuni Length = 225 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
2vg0_A227 Short-chain Z-isoprenyl diphosphate synthetase; pe 2e-86
1f75_A249 Undecaprenyl pyrophosphate synthetase; parallel be 2e-85
2vg3_A284 Undecaprenyl pyrophosphate synthetase; transferase 7e-84
3qas_B253 Undecaprenyl pyrophosphate synthase; alpha-helix, 2e-82
2d2r_A245 Undecaprenyl pyrophosphate synthase; prenyltransfe 2e-79
3ugs_B225 Undecaprenyl pyrophosphate synthase; niaid, csgid, 1e-75
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A* Length = 227 Back     alignment and structure
 Score =  257 bits (658), Expect = 2e-86
 Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 10/229 (4%)

Query: 25  VPKHIAFIMDGNRRYAKRSNAKTIE-GHSKGFDKLAETLQWCLDLGVREVTVYAFSIENF 83
           +P+HIA + DGNRR+A+ +    +  G+  G  K+AE L+WC + G+   TVY  S EN 
Sbjct: 2   LPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENL 61

Query: 84  KRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITK 143
           +R  +E+  L+++     + +             +R +G++ L+  +     + A+  T 
Sbjct: 62  QRDPDELAALIEIITDVVEEICAPA-----NHWSVRTVGDLGLIGEEPARRLRGAVESTP 116

Query: 144 DNTEGFLNVAFSYTSRDEMVETSRILI----DGLRTNKITNEDVTMDLFDKCLYTGTSPE 199
           +     +NVA  Y  R E+V+  R L+        T +   + VT++   + LYT   P+
Sbjct: 117 EVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVDAVTVEGISENLYTSGQPD 176

Query: 200 PDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQ 248
           PDL+IRTSGE RLS F+L QS  S ++F    WP F   + + A+  + 
Sbjct: 177 PDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALRDYS 225
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1 Length = 249 Back     alignment and structure
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Length = 284 Back     alignment and structure
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A* Length = 253 Back     alignment and structure
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A Length = 245 Back     alignment and structure
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} Length = 225 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
4h8e_A256 Undecaprenyl pyrophosphate synthase; alpha-helix, 100.0
3sgv_B253 Undecaprenyl pyrophosphate synthase; alpha/beta, t 100.0
3ugs_B225 Undecaprenyl pyrophosphate synthase; niaid, csgid, 100.0
2d2r_A245 Undecaprenyl pyrophosphate synthase; prenyltransfe 100.0
1f75_A249 Undecaprenyl pyrophosphate synthetase; parallel be 100.0
3qas_B253 Undecaprenyl pyrophosphate synthase; alpha-helix, 100.0
2vg3_A284 Undecaprenyl pyrophosphate synthetase; transferase 100.0
2vg0_A227 Short-chain Z-isoprenyl diphosphate synthetase; pe 100.0
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp} Back     alignment and structure
Probab=100.00  E-value=1.3e-87  Score=610.16  Aligned_cols=237  Identities=34%  Similarity=0.547  Sum_probs=229.9

Q ss_pred             HhcCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHH
Q psy16152         19 LLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLAR   98 (295)
Q Consensus        19 ~l~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~   98 (295)
                      .+..+++|+|||||||||||||+++|++..+||++|++++.+++.||.++||++||||+||+|||+||++||+.||++++
T Consensus        18 ~~~~~~iP~HVAiIMDGN~RwAk~rgl~r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~   97 (256)
T 4h8e_A           18 ELDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPV   97 (256)
T ss_dssp             -CCTTCCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred             hccCCCCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHHHHHHH
Confidence            35668899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCC
Q psy16152         99 AKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKI  178 (295)
Q Consensus        99 ~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l  178 (295)
                      +++.+.+   +.++++||+|+++||++.||+++++.+..+++.|++|++++||||++||||+||++|++++++++++|.+
T Consensus        98 ~~l~~~~---~~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~i~~~v~~g~l  174 (256)
T 4h8e_A           98 NFLKTFL---PELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGL  174 (256)
T ss_dssp             HHHHHHH---HHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHTTTCCSCEEEEEEEECHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHH---HHHHHcCeEEEEecCcccCCHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCHHHHHHHHHHHHHHHHcCCC
Confidence            9998765   4588999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhcccccc
Q psy16152        179 TNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMWR  258 (295)
Q Consensus       179 ~~~dI~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk~~  258 (295)
                      ++++||++.|+++|+++++|||||+||||||+|||||||||++||||||++++||||+..||++||.+||+|+||||+++
T Consensus       175 ~~~~I~e~~i~~~L~t~~~PdpDLlIRTsGE~RLSnFLLWQ~aYsElyF~d~lWPdF~~~dl~~Ai~~yq~R~RRfG~~~  254 (256)
T 4h8e_A          175 NSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGGLS  254 (256)
T ss_dssp             CGGGCCHHHHHTTSTTTTSCCCSEEEECSSCCCCTTSSTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHHHCCCCTTCC-
T ss_pred             ChhhCCHHHHHHhCCCCCCCCCcEEEEcCCCCcccCchHHHHcCeEEEECCCCCccCCHHHHHHHHHHHHhhhhccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999985
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ... Back     alignment and structure
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0 Back     alignment and structure
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A Back     alignment and structure
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1 Back     alignment and structure
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A* Back     alignment and structure
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Back     alignment and structure
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 295
d1ueha_228 c.101.1.1 (A:) Undecaprenyl diphosphate synthase { 6e-62
d1f75a_229 c.101.1.1 (A:) Undecaprenyl diphosphate synthase { 1e-58
>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]} Length = 228 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Escherichia coli [TaxId: 562]

 Score =  193 bits (492), Expect = 6e-62
 Identities = 71/225 (31%), Positives = 118/225 (52%), Gaps = 3/225 (1%)

Query: 24  HVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENF 83
           H  +H+A IMDGN R+AK+       GH  G   +   + +  + G+  +T+YAFS EN+
Sbjct: 4   HGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENW 63

Query: 84  KRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITK 143
            R  +EV+ LM+L       L  E   L+   +R+RIIG+     S L    +++  +T 
Sbjct: 64  NRPAQEVSALMELFV---WALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTA 120

Query: 144 DNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLI 203
            NT   LN+A +Y  R ++V+  R L + ++   +  + +  ++ ++ +        DL+
Sbjct: 121 GNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLV 180

Query: 204 IRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQ 248
           IRT GE R+S+F+L Q   + LYF   LWP+F   +   A+ AF 
Sbjct: 181 IRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFA 225
>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]} Length = 229 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
d1ueha_228 Undecaprenyl diphosphate synthase {Escherichia col 100.0
d1f75a_229 Undecaprenyl diphosphate synthase {Micrococcus lut 100.0
>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.6e-81  Score=561.96  Aligned_cols=226  Identities=31%  Similarity=0.508  Sum_probs=205.7

Q ss_pred             CCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHH
Q psy16152         23 GHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFK  102 (295)
Q Consensus        23 ~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~  102 (295)
                      ...|+|||||||||||||+++|++..+||.+|++++.+++.||.++||++||||+||+|||+||++||+.||+++..++.
T Consensus         3 ~~~P~HiaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~ii~~~~~~gI~~lTvYaFStEN~~R~~~Ev~~Lm~l~~~~l~   82 (228)
T d1ueha_           3 AHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALD   82 (228)
T ss_dssp             TTCCCEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEC--------------CHHHHHHHH
T ss_pred             CCCCCEEEEeccCCHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHcCCcEEEeehhhhhhcccccchhHHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCCCCCC
Q psy16152        103 RLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNED  182 (295)
Q Consensus       103 ~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l~~~d  182 (295)
                      +.   .+.+++++|+|+++|+.+.||+++++.+..+++.|++|++++||||++||||+||++|++.+++++.+|.+.+++
T Consensus        83 ~~---~~~~~~~~i~i~~iG~~~~lp~~~~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~~~~~~~~~~~~~  159 (228)
T d1ueha_          83 SE---VKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQ  159 (228)
T ss_dssp             HT---HHHHHHTTCEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSCEEEEEESCCHHHHHHHHHHHHHHHHHTTSCCGGG
T ss_pred             Hh---HHHHHhccEEEEEECCcchhhhhhhhhhhhHHHhccCCCCceEEEEeccccchHHHHHHHHHHHHHHhCCCCHhH
Confidence            54   356889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhh
Q psy16152        183 VTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDF  251 (295)
Q Consensus       183 I~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~  251 (295)
                      ||++.|+++|+++++||||||||||||+|||||||||++||||||++++||||+..||.+||.+||+|+
T Consensus       160 i~~~~~~~~l~~~~~pdpDLlIRTsGe~RLSnFLlWQ~aysEl~F~d~lWPdf~~~dl~~al~~y~~R~  228 (228)
T d1ueha_         160 IDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE  228 (228)
T ss_dssp             CCHHHHHTTSTTTTSCCCCEEEECSSCCSCTTSSCGGGTTCEEEECCSCGGGCCHHHHHHHHHHHHTCC
T ss_pred             hhhhheecccccCCCCCCcEEEecCCceeccccchhcccceeEEECCCCCCcCCHHHHHHHHHHHHccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999885
>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]} Back     information, alignment and structure