Psyllid ID: psy16310
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1493 | 2.2.26 [Sep-21-2011] | |||||||
| Q9GZR7 | 859 | ATP-dependent RNA helicas | yes | N/A | 0.286 | 0.497 | 0.454 | 1e-105 | |
| Q5RDL2 | 859 | ATP-dependent RNA helicas | yes | N/A | 0.286 | 0.497 | 0.452 | 1e-104 | |
| Q9ESV0 | 857 | ATP-dependent RNA helicas | yes | N/A | 0.258 | 0.450 | 0.492 | 1e-102 | |
| Q54TD7 | 940 | ATP-dependent RNA helicas | yes | N/A | 0.328 | 0.521 | 0.386 | 9e-98 | |
| A3AVH5 | 832 | DEAD-box ATP-dependent RN | yes | N/A | 0.323 | 0.580 | 0.389 | 4e-97 | |
| A2XVF7 | 832 | DEAD-box ATP-dependent RN | N/A | N/A | 0.323 | 0.580 | 0.389 | 4e-97 | |
| Q93Y39 | 826 | DEAD-box ATP-dependent RN | yes | N/A | 0.306 | 0.553 | 0.396 | 1e-91 | |
| P0CQ91 | 772 | ATP-dependent RNA helicas | N/A | N/A | 0.302 | 0.584 | 0.395 | 3e-89 | |
| P0CQ90 | 772 | ATP-dependent RNA helicas | yes | N/A | 0.302 | 0.584 | 0.393 | 4e-89 | |
| O74393 | 648 | ATP-dependent RNA helicas | yes | N/A | 0.309 | 0.712 | 0.368 | 4e-88 |
| >sp|Q9GZR7|DDX24_HUMAN ATP-dependent RNA helicase DDX24 OS=Homo sapiens GN=DDX24 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 206/453 (45%), Positives = 293/453 (64%), Gaps = 26/453 (5%)
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 840
T I+S +PS DI A +G T++ +L G + E P+
Sbjct: 302 TVIESEALPS------DIAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 354
Query: 841 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 900
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 355 ENEEENLDKEQTGNLKQELDDKSATCKAYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 411
Query: 901 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 960
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 412 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 471
Query: 961 ETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKK 1018
E DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK K K
Sbjct: 472 EADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDK 531
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
+K D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PG
Sbjct: 532 TAKLD---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPG 588
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
R+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAA
Sbjct: 589 RSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAA 648
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K
Sbjct: 649 RGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKK 708
Query: 1199 KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 709 DEDIPLFPVQTKYMDVVKERIRLARQIEKSEYR 741
|
ATP-dependent RNA helicase. Homo sapiens (taxid: 9606) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|Q5RDL2|DDX24_PONAB ATP-dependent RNA helicase DDX24 OS=Pongo abelii GN=DDX24 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 205/453 (45%), Positives = 292/453 (64%), Gaps = 26/453 (5%)
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE----------- 840
T I+S +PS D A +G T++ +L G + E P+
Sbjct: 302 TVIESEALPS------DTAAEARAKTGGTVS-DQALLFGDDDAGEGPSSLIREKPVPKQN 354
Query: 841 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 900
E+E ++ +E+ + +EL+++SA + K+ L L+L PTRELA+QV+ HI
Sbjct: 355 ENEEENLDKEQTGNLKQELDDKSATCKTYPKRP---LLGLVLTPTRELAVQVKQHIDAVA 411
Query: 901 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 960
++T +K A +VGGMST+KQ R+LN+ P I+VATPGRLWE I+ H+HL L ++ LV+D
Sbjct: 412 RFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVD 471
Query: 961 ETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKK 1018
E DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK K K
Sbjct: 472 EADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDK 531
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
+K D +Q + PK++DLT +TLTE+KI C+ DEKD YLYYF++Q+PG
Sbjct: 532 TAKLD---LLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPG 588
Query: 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138
R+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAA
Sbjct: 589 RSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAA 648
Query: 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
RGLDIP ++HVIHY VPRTSEIY+HRSGRTARA NEGL+L+LI +++ + K++ +L+K
Sbjct: 649 RGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKK 708
Query: 1199 KVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 709 DEDIPLFPVQTKYMDVVKERIRLARQIEKSEYR 741
|
ATP-dependent RNA helicase. Pongo abelii (taxid: 9601) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q9ESV0|DDX24_MOUSE ATP-dependent RNA helicase DDX24 OS=Mus musculus GN=Ddx24 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/392 (49%), Positives = 266/392 (67%), Gaps = 6/392 (1%)
Query: 843 ENDSGLEEEAEEVLEELEEESANTTEFVK-KTRNKLYALILAPTRELAIQVQNHILDAGK 901
+N+ G E+ E +L++E + K R L L+L PTRELAIQV+ HI K
Sbjct: 353 QNEDGEEKFDAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAK 412
Query: 902 YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 961
+T + A +VGGMST+KQ R+LN+ P I++ATPGRLWE ++ H HL+ L ++ LVIDE
Sbjct: 413 FTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDE 472
Query: 962 TDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKV 1019
DRM+E GHF EL +L+ + ++ + RQT VFSATLT H + KK KK+
Sbjct: 473 ADRMVEKGHFAELSQLLEMLNDSQYNPSRQTLVFSATLTLVHQAPARILHKK---HVKKM 529
Query: 1020 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 1079
K D +Q + PK++DLT G +TLTE+KI C+ DEKD YLYYF++Q+PGR
Sbjct: 530 DKTDKLDLLMQKVGMRGKPKVIDLTRNEGTVETLTETKIHCETDEKDLYLYYFLMQYPGR 589
Query: 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
+LVF NSIS +KRL+ LL +L PL LHA M+Q+QRL+NL++F + +LLATDVAAR
Sbjct: 590 SLVFANSISCIKRLSGLLKVLDVMPLTLHACMHQKQRLRNLEQFARLQDCVLLATDVAAR 649
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
GLDIP ++HVIHY VPRTSEIYIHRSGRTARA +EGL+L+LI +++ + K++ +L+K
Sbjct: 650 GLDIPKVQHVIHYQVPRTSEIYIHRSGRTARAASEGLSLMLIGPEDVINFKKIYKTLQKD 709
Query: 1200 VDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 710 EDIPLFPVQSKYMDVVKERIRLARQIEKAEYR 741
|
ATP-dependent RNA helicase. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q54TD7|DDX24_DICDI ATP-dependent RNA helicase ddx24 OS=Dictyostelium discoideum GN=ddx24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 359 bits (922), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 217/562 (38%), Positives = 316/562 (56%), Gaps = 72/562 (12%)
Query: 750 KELLEVDT-SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 808
KE+ E T S E + M+EW +N+ I++ L GF PT+IQS V+P A+ + D
Sbjct: 275 KEISEQKTISKEEQDQLDMSEWNSYNLDPLILKGLRSLGFSKPTEIQSSVIPVAVSSGYD 334
Query: 809 IVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868
++GAA+TGSGKTLAFGIP++ I+ L + EN + ++ + E EE E
Sbjct: 335 VIGAAQTGSGKTLAFGIPMVQRILQHLRKHGQNVENKANKQQNDNDDENEDVEEEEEEEE 394
Query: 869 FVKKTR--NKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926
+++ KL++L++ PTRELAIQV NHI +T +KV +VGGM++++Q R+L+K
Sbjct: 395 EEGRSKEYRKLFSLVICPTRELAIQVTNHIKSIISHTNLKVISIVGGMASQRQQRVLSKR 454
Query: 927 PHILVATPGRLWEF-------------------------IQLGHF------------HLT 949
P I+VATPGRLWE ++ GHF H T
Sbjct: 455 PEIVVATPGRLWELITEGHQHLVELESLLCLGIDEADRMVEQGHFAELESILKTLPIHRT 514
Query: 950 ELYKINYLVIDET----------DRMIESGHF--PELKNILDRV-------------TMT 984
+ K L ET D++ + G + ++ D++
Sbjct: 515 AMSKKERLKKKETEEKRNKRRKVDKLNDKGEMIKGDQDDMDDQIPDEEMEELEQEEQNHL 574
Query: 985 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 1044
T+ RQTFVFSATL N S+ KK K P ++ + + K++D+T
Sbjct: 575 TTTHKRQTFVFSATLV----NIPGDGAPTSQKKKYRKLTPIENLIEKVRFQRDYKLIDVT 630
Query: 1045 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 1104
+K K L E+KI C +EKD YLYYF+ ++PGRTLVF NSI +RL + +L+
Sbjct: 631 QKRLTAKNLLETKIFCNLEEKDMYLYYFVERYPGRTLVFVNSIDCARRLIPIFNILEVPV 690
Query: 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
LHA M Q+QRLKNLDRFR +N +L+ATDVAARGLDIP ++HVIHY VPRT+++YIHR
Sbjct: 691 FALHAQMQQKQRLKNLDRFRTLDNVVLIATDVAARGLDIPLVQHVIHYQVPRTTQLYIHR 750
Query: 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1224
SGRTAR++ +G+++VL+ E PLYIK+ +S+E D+ +FP D + ++ RI+LAK
Sbjct: 751 SGRTARSDQDGISVVLVTPKERPLYIKLDSSIEH--DIGNFPTDIRYMEGVRDRIELAKE 808
Query: 1225 IEYLESK-IKKNRPDNWLHRSG 1245
I+ L + +K NR +W +
Sbjct: 809 IDKLSHQSLKDNREKSWFKKQA 830
|
ATP-dependent RNA helicase. Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A3AVH5|RH13_ORYSJ DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. japonica GN=Os04g0510400 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 357 bits (916), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 209/536 (38%), Positives = 310/536 (57%), Gaps = 53/536 (9%)
Query: 754 EVDTSNNEDMFV---QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 810
+++ NN+ + + ++ W + + +I A+ + GFK PT IQ P+A KD++
Sbjct: 181 DMEQDNNDGLILGEDEVYAWRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVI 240
Query: 811 GAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 870
GAAETGSGKTLAFG+PIL ++ EE E L E E +E ES
Sbjct: 241 GAAETGSGKTLAFGLPILQRLL-------EEQEKAMRLSREDESTQDENSRESP------ 287
Query: 871 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 930
L ALIL PTRELA QV +H+ +A K+ ++V +VGG+S EKQ R+L + P I+
Sbjct: 288 ------LRALILTPTRELAKQVCDHLKEAAKFLRIQVVPIVGGLSMEKQERLLKRKPEIV 341
Query: 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS--- 987
V TPGRLWE + G+ HL +L+ +++ V+DE DRMIE GHF EL++I++ + +T S
Sbjct: 342 VGTPGRLWELMSTGNQHLIKLHSLSFFVLDEADRMIERGHFHELQSIIEMLPVTNGSDEQ 401
Query: 988 ----------------QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD-PSIKRLQ 1030
+ RQTFVFSATL S LK+G +K + D SI+ L
Sbjct: 402 TVGTTPSCETVPILQIKKRQTFVFSATLALSANFRKKLKRGLVTAKASASTDLSSIEALS 461
Query: 1031 DLLNIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSIS 1088
+K + +IVDLT+ + + L ES I C D+KD+YLYY + H GRT++FC SI+
Sbjct: 462 KQARMKPNAEIVDLTKASILPEKLEESFIECSDDDKDAYLYYILSVHGQGRTIIFCTSIA 521
Query: 1089 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 1148
+++ L+ +L +L + L HA M QR R+K +DRFR+ NSIL+ATD ARG+D +
Sbjct: 522 ALRHLSSILRVLGINVLTNHAQMQQRARMKAVDRFRESENSILVATDGFARGMDFDDVRT 581
Query: 1149 VIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID 1208
VIHY +P ++++YIHRSGRTAR + G ++ LI + + + SL K+ +L FP+D
Sbjct: 582 VIHYQLPHSTDVYIHRSGRTARKSMAGCSIALISPADKAKFYSLCKSLSKE-NLQQFPVD 640
Query: 1209 ESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLHRSGRTARANNEGLTLVLIESD 1263
+ + + R+ LA+ I+ + K ++N +WL R N E + L+L SD
Sbjct: 641 HAYMPAVMNRLTLARQIDKITRKNSQENANKSWLQR-------NAESMGLLLETSD 689
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A2XVF7|RH13_ORYSI DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. indica GN=OsI_016050 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 357 bits (916), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 209/536 (38%), Positives = 310/536 (57%), Gaps = 53/536 (9%)
Query: 754 EVDTSNNEDMFV---QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 810
+++ NN+ + + ++ W + + +I A+ + GFK PT IQ P+A KD++
Sbjct: 181 DMEQDNNDGLILGEDEVYAWRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVI 240
Query: 811 GAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 870
GAAETGSGKTLAFG+PIL ++ EE E L E E +E ES
Sbjct: 241 GAAETGSGKTLAFGLPILQRLL-------EEQEKAMRLSREDESTQDENSRESP------ 287
Query: 871 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHIL 930
L ALIL PTRELA QV +H+ +A K+ ++V +VGG+S EKQ R+L + P I+
Sbjct: 288 ------LRALILTPTRELAKQVCDHLKEAAKFLRIQVVPIVGGLSMEKQERLLKRKPEIV 341
Query: 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS--- 987
V TPGRLWE + G+ HL +L+ +++ V+DE DRMIE GHF EL++I++ + +T S
Sbjct: 342 VGTPGRLWELMSTGNQHLIKLHSLSFFVLDEADRMIERGHFHELQSIIEMLPVTNGSDEQ 401
Query: 988 ----------------QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD-PSIKRLQ 1030
+ RQTFVFSATL S LK+G +K + D SI+ L
Sbjct: 402 TVGTTPSCETVPILQIKKRQTFVFSATLALSANFRKKLKRGLVTAKASASTDLSSIEALS 461
Query: 1031 DLLNIK-SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSIS 1088
+K + +IVDLT+ + + L ES I C D+KD+YLYY + H GRT++FC SI+
Sbjct: 462 KQARMKPNAEIVDLTKASILPEKLEESFIECSDDDKDAYLYYILSVHGQGRTIIFCTSIA 521
Query: 1089 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 1148
+++ L+ +L +L + L HA M QR R+K +DRFR+ NSIL+ATD ARG+D +
Sbjct: 522 ALRHLSSILRVLGINVLTNHAQMQQRARMKAVDRFRESENSILVATDGFARGMDFDDVRT 581
Query: 1149 VIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID 1208
VIHY +P ++++YIHRSGRTAR + G ++ LI + + + SL K+ +L FP+D
Sbjct: 582 VIHYQLPHSTDVYIHRSGRTARKSMAGCSIALISPADKAKFYSLCKSLSKE-NLQQFPVD 640
Query: 1209 ESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLHRSGRTARANNEGLTLVLIESD 1263
+ + + R+ LA+ I+ + K ++N +WL R N E + L+L SD
Sbjct: 641 HAYMPAVMNRLTLARQIDKITRKNSQENANKSWLQR-------NAESMGLLLETSD 689
|
Oryza sativa subsp. indica (taxid: 39946) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q93Y39|RH13_ARATH DEAD-box ATP-dependent RNA helicase 13 OS=Arabidopsis thaliana GN=RH13 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 339 bits (869), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 198/500 (39%), Positives = 287/500 (57%), Gaps = 43/500 (8%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+ W + +++++Y+ FK PTKIQ A KD++GAAETGSGKTLAFG+P
Sbjct: 189 FSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLP 248
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
IL +++ E E L L+ E A L ALI+ PTR
Sbjct: 249 ILQRLLD---------------EREKVGKLYALKGEEAQKY----AADGYLRALIITPTR 289
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELA+QV H+ +A K VKV +VGGM +EKQ R L + P I+VATPGRLWE + G
Sbjct: 290 ELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEK 349
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET-------------------S 987
HL EL+ +++ V+DE DRM+E GHF EL++ILD + +T+
Sbjct: 350 HLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPK 409
Query: 988 QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP-SIKRLQDLLNIK-SPKIVDLTE 1045
+ RQTFVFSAT+ S LK+G SKSK+ S G+ SI+ L + ++ + I+DLT
Sbjct: 410 KKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDLTT 469
Query: 1046 KIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSP 1104
+ + ES I C+ EKD+YLYY + H GRT+VFC S++ ++ ++ LL +L
Sbjct: 470 TSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTDLRHISGLLKILGLDV 529
Query: 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
L + M QR RLK++DRFR N IL+ATD+ ARG+DI + +IHY +P ++E+Y+HR
Sbjct: 530 CTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHR 589
Query: 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1224
GRTARA +G ++ LIE +E + + S + + FP+D S + ++KR+ LA+
Sbjct: 590 CGRTARAFADGCSIALIEPNETSKFYTLCKSFSME-SVKIFPLDNSYMPAVRKRLYLARQ 648
Query: 1225 IEYLESKIKKNRPD-NWLHR 1243
I +E K + D WL +
Sbjct: 649 IYEIERKGSRENADRTWLKK 668
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P0CQ91|MAK5_CRYNB ATP-dependent RNA helicase MAK5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=MAK5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 331 bits (848), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 209/528 (39%), Positives = 306/528 (57%), Gaps = 77/528 (14%)
Query: 753 LEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGA 812
L+ + + N+D+ + EW ++ ++ R+ F PT IQS +P+ + R D+VG
Sbjct: 160 LDDEPAFNDDL---LPEWSSISLHPSLKRSFLASSFTAPTAIQSRAIPAGITGR-DVVGV 215
Query: 813 AETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 872
AETGSGKTLA+ +PIL ++ + ++ +G+
Sbjct: 216 AETGSGKTLAYSLPILHYLLG-------QRKSKAGI------------------------ 244
Query: 873 TRNKLYALILAPTRELAIQVQNHI---LDAGKYTP----------VKVACVVGGMSTEKQ 919
+ L AL+L PTRELA+QV +H+ L TP V V VVGG+S +KQ
Sbjct: 245 -KRPLSALVLCPTRELALQVMDHLNALLKHALATPDGEKPQGPPRVSVGSVVGGLSAQKQ 303
Query: 920 LRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL- 978
RIL + ++VATPGRLW+ I+ T + + +LVIDE DRMIE+GHF EL++I+
Sbjct: 304 KRILERGCDVIVATPGRLWDLIKADDELATSVRTLRFLVIDEADRMIENGHFAELESIVK 363
Query: 979 --------------DRV-----TMTETSQPR---QTFVFSATLTHSLKNSLNLKKGQSKS 1016
D V T+ E S R QTFVFSATL+ L+ NLK+
Sbjct: 364 LTQRSTAQQGPDDDDPVFQAMATLFEESTAREDMQTFVFSATLSKDLQK--NLKRRSRSW 421
Query: 1017 KKVSKGDPSIKRLQDLLNIK--SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
K K +++ L + L+ + +P+++DL+ + G+ +L ES I D+KD YLYYF+L
Sbjct: 422 KGKGKRSSTLEDLVEKLDFRDENPEVIDLSPEGGVVSSLRESMIESTKDDKDLYLYYFLL 481
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
++PGR++VF NSI S++RL LLT+L+ PLH+ + Q+QRLKNLDRF+ IL+AT
Sbjct: 482 RYPGRSIVFVNSIDSIRRLLPLLTLLQLPVFPLHSHLQQKQRLKNLDRFKSNPKGILIAT 541
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDIP ++HV+H+++PRT++ YIHRSGRTARA NEG L L+ DE + +
Sbjct: 542 DVAARGLDIPQVDHVVHFNLPRTADAYIHRSGRTARAQNEGFALQLVSPDEKSVQRALMK 601
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
SLE+ +LPD PI+ L +++R+ +A IE + + K D NWL
Sbjct: 602 SLERTHELPDLPIEAGFLPSLRERLRVATEIEKAQHRATKATHDKNWL 649
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P0CQ90|MAK5_CRYNJ ATP-dependent RNA helicase MAK5 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=MAK5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 330 bits (847), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 208/528 (39%), Positives = 305/528 (57%), Gaps = 77/528 (14%)
Query: 753 LEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGA 812
L+ + + N+D+ + EW ++ ++ R+ F PT IQS +P+ + R D+VG
Sbjct: 160 LDDEPAFNDDL---LPEWSSISLHPSLKRSFLASSFTAPTAIQSRAIPAGITGR-DVVGV 215
Query: 813 AETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 872
AETGSGKTLA+ +PIL ++ + ++ +G+
Sbjct: 216 AETGSGKTLAYSLPILHYLLG-------QRKSKAGI------------------------ 244
Query: 873 TRNKLYALILAPTRELAIQVQNHI---LDAGKYTP----------VKVACVVGGMSTEKQ 919
+ L AL+L PTRELA+QV +H+ L TP V V VVGG+S +KQ
Sbjct: 245 -KRPLSALVLCPTRELALQVMDHLNALLKHALATPDGEKPQGPPRVSVGSVVGGLSAQKQ 303
Query: 920 LRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL- 978
RIL + ++VATPGRLW+ I+ T + + +LVIDE DRMIE+GHF EL++I+
Sbjct: 304 KRILERGCDVIVATPGRLWDLIKADDELATSVRTLRFLVIDEADRMIENGHFAELESIVK 363
Query: 979 --------------DRV-----TMTETSQPR---QTFVFSATLTHSLKNSLNLKKGQSKS 1016
D V T+ E S R QTFVFSATL+ L+ NLK+
Sbjct: 364 LTQRSTAQQGPDDDDPVFQAMATLFEESTAREDMQTFVFSATLSKDLQK--NLKRRSRSW 421
Query: 1017 KKVSKGDPSIKRLQDLLNIK--SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
K K +++ L + L+ + +P+++DL+ + G+ +L ES I D+KD YLYYF+L
Sbjct: 422 KGKGKRSSTLEDLVEKLDFRDENPEVIDLSPEGGVVSSLRESMIESTKDDKDLYLYYFLL 481
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
++PGR++VF NSI S++RL L T+L+ PLH+ + Q+QRLKNLDRF+ IL+AT
Sbjct: 482 RYPGRSIVFVNSIDSIRRLLPLFTLLQLPVFPLHSHLQQKQRLKNLDRFKSNPKGILIAT 541
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194
DVAARGLDIP ++HV+H+++PRT++ YIHRSGRTARA NEG L L+ DE + +
Sbjct: 542 DVAARGLDIPQVDHVVHFNLPRTADAYIHRSGRTARAQNEGFALQLVSPDEKSVQRALMK 601
Query: 1195 SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
SLE+ +LPD PI+ L +++R+ +A IE + + K D NWL
Sbjct: 602 SLERTHELPDLPIEAGFLPSLRERLRVATEIEKAQHRATKATHDKNWL 649
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|O74393|MAK5_SCHPO ATP-dependent RNA helicase mak5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mak5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 327 bits (838), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 196/532 (36%), Positives = 297/532 (55%), Gaps = 70/532 (13%)
Query: 733 KKLKQKKKKKQTYTSANKELLEVD---TSNNEDMF-------------VQMAEWVKFNIP 776
+K +KKKK TS E+ + TS N + F V ++ W F++
Sbjct: 71 QKEASEKKKKGKRTSPTIEMTSLGSKVTSKNYNEFSTLEEEDEHNSHGVDVSAWAHFSLS 130
Query: 777 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 836
++ +L + GF P IQS+V+P A + DI+G A+TGSGKTLAFGIPIL
Sbjct: 131 PEMLGSLSKAGFSKPMPIQSLVIPEASIGF-DIIGKADTGSGKTLAFGIPIL-------- 181
Query: 837 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896
E L ++ ++V+ AL++APTRELA Q+ H
Sbjct: 182 ----------------EHCLRNVD------AKYVQ-------ALVVAPTRELAHQICQH- 211
Query: 897 LDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ----LGHFHLTEL 951
+ K +P ++V + GG++ +KQ R+LNK PH++VATPGRLW I G+F
Sbjct: 212 FELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFK---- 267
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
KI LV+DE DR+++ HF EL +L+ + +Q RQTF+FSAT L+ LKK
Sbjct: 268 -KIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQ-RQTFIFSATFDEGLQQ--RLKK 323
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
+ P L+++ PK +D + + + E I C EKD YLYY
Sbjct: 324 NMKGNITEKYNSPMENMLKEVRFFGKPKFLDANPQSAVASRVLEGLIECAPAEKDLYLYY 383
Query: 1072 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
I+++PG+T+VF N I +KR+T L LK PLHA ++Q++RL++L++F++ +L
Sbjct: 384 LIMRYPGKTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVL 443
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191
+ TDVAARG+DIP + HVIHYHVP T+++Y+HRSGRTARAN +G+++++ E+ +
Sbjct: 444 VCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVSILMCGPKELSQLKR 503
Query: 1192 MFNSLEKKVD-LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK-NRPDNWL 1241
+ L+KK++ +FP+D S+L ++K R+ LA I L K + R + WL
Sbjct: 504 LCYRLKKKIETFINFPVDMSILDILKTRVVLAHKIVNLTRKDGRVGREEAWL 555
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1493 | ||||||
| 332028699 | 743 | ATP-dependent RNA helicase DDX24 [Acromy | 0.334 | 0.671 | 0.491 | 1e-139 | |
| 195028797 | 806 | GH20064 [Drosophila grimshawi] gi|193903 | 0.318 | 0.590 | 0.488 | 1e-137 | |
| 307190840 | 739 | ATP-dependent RNA helicase DDX24 [Campon | 0.327 | 0.661 | 0.496 | 1e-137 | |
| 322795046 | 736 | hypothetical protein SINV_04950 [Solenop | 0.326 | 0.663 | 0.493 | 1e-137 | |
| 198458698 | 807 | GA24853 [Drosophila pseudoobscura pseudo | 0.375 | 0.693 | 0.442 | 1e-136 | |
| 189239044 | 645 | PREDICTED: similar to CG9143 CG9143-PA [ | 0.294 | 0.682 | 0.517 | 1e-136 | |
| 270010898 | 599 | hypothetical protein TcasGA2_TC015943 [T | 0.319 | 0.796 | 0.492 | 1e-136 | |
| 195154787 | 807 | GL17630 [Drosophila persimilis] gi|19411 | 0.318 | 0.589 | 0.486 | 1e-136 | |
| 56201305 | 814 | unnamed protein product [Drosophila simu | 0.325 | 0.597 | 0.472 | 1e-136 | |
| 195336062 | 814 | GM19796 [Drosophila sechellia] gi|194126 | 0.325 | 0.597 | 0.472 | 1e-135 |
| >gi|332028699|gb|EGI68731.1| ATP-dependent RNA helicase DDX24 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 259/527 (49%), Positives = 349/527 (66%), Gaps = 28/527 (5%)
Query: 755 VDTSNNEDMFVQMAE-WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 813
D +N+++ AE W +P +I+AL + F +PT IQ+ +P+A+L R+DI+GAA
Sbjct: 129 CDIDSNKNLAKINAEAWRSMGVPTAVIKALADQNFHSPTMIQTQTLPAAILGRRDILGAA 188
Query: 814 ETGSGKTLAFGIPILTGIVN-KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 872
ETGSGKTLAFGIPI+ GI++ K +N + E D+ + VL E + N V
Sbjct: 189 ETGSGKTLAFGIPIIKGILDLKNQNKDQNSEKDTEESDSENIVLSEFD----NCVNIVND 244
Query: 873 TR---------NKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 923
+ LYALIL PTRELA+Q++NH+ A KYT +K+A V+GGM+ KQ RIL
Sbjct: 245 KKLDDCHNIPTKPLYALILTPTRELAMQIKNHLTQAAKYTDIKIAVVLGGMAAVKQERIL 304
Query: 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 983
NK P I++ATPGRLWE IQ G+ HL ++ I YL IDETDRM+E GHF EL ++L+++
Sbjct: 305 NKGPEIVIATPGRLWELIQEGNSHLNQIDSIRYLAIDETDRMMEKGHFQELHDLLEKMNA 364
Query: 984 TETS-QPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPS--IKRLQDLLNIKSP 1038
Q RQTFVFSATLT H L + L+ KK + K+ K P ++++ LL IK+P
Sbjct: 365 DPAKMQKRQTFVFSATLTMVHDLPDYLDRKKKRYARSKICKLTPDQKLQKIIQLLKIKNP 424
Query: 1039 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLT 1098
K+VDLT++ G LTE +I C D KD YLYYF+ +H GRTLVFCNSI VKRL L
Sbjct: 425 KVVDLTKESGTADNLTECRIACTIDHKDYYLYYFLKRHNGRTLVFCNSIGCVKRLATLFN 484
Query: 1099 MLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 1158
+LKC PLPLHA+M QRQRLKNL+RF+ N +L+ATDVAARGLDIP IEHVIHY VPRT+
Sbjct: 485 ILKCKPLPLHANMQQRQRLKNLERFQADENGLLIATDVAARGLDIPNIEHVIHYQVPRTA 544
Query: 1159 EIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKR 1218
E YIHRSGRTARA EG+T++++E E Y K+ +L + DLP FP+ + +L IK+R
Sbjct: 545 ENYIHRSGRTARAQKEGITILMMEPSEKQNYTKLCKTLGRTHDLPIFPVVDRILVTIKER 604
Query: 1219 IDLAKSIEYLESKIKK-NRPDNWLHRSGRTARANNEGLTLVLIESDE 1264
+D+A+ I+ +E K ++ N NWL ++ E + ++L E D+
Sbjct: 605 VDVARDIDKIELKCRRQNNQKNWLQKAA-------EDMEMILDEEDD 644
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195028797|ref|XP_001987262.1| GH20064 [Drosophila grimshawi] gi|193903262|gb|EDW02129.1| GH20064 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1281), Expect = e-137, Method: Compositional matrix adjust.
Identities = 247/506 (48%), Positives = 342/506 (67%), Gaps = 30/506 (5%)
Query: 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 824
V M++W IP +I+RAL ++G++ PT+IQ+M +P+A+ +KDI+GAAETGSGKTLAFG
Sbjct: 194 VDMSKWQGMGIPTSIMRALAEQGYEAPTQIQAMTLPAAIHGKKDILGAAETGSGKTLAFG 253
Query: 825 IPILTGIV-----------------NKLENPTEEDENDSGLEEEAEEVLEELE------E 861
IPIL+GI+ +K+E E + S E EEL+ E
Sbjct: 254 IPILSGIMELKQRNDGSGIRTRAPKHKVEATVEAEVPTSKENHELTPPPEELDYVSGASE 313
Query: 862 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 921
E ++ ++ R LYAL+L PTRELA+QV+NH++ A KYT ++VA + GG+S KQ R
Sbjct: 314 EESDAEDYSSSGRRPLYALVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLSVAKQER 373
Query: 922 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 981
+L +CP I+VATPGRLWE G+ HL ++ +N+L IDETDRM+E GHF EL+ +L +
Sbjct: 374 VLRQCPEIVVATPGRLWELYAQGNKHLNKIEHVNFLCIDETDRMVEKGHFEELRMLLKVL 433
Query: 982 TM-TETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG--DPSIKRLQDLLNIK 1036
E Q RQ FVFSATLT H L + K+ +K K +K D I+ L + L I
Sbjct: 434 NAHEERKQLRQNFVFSATLTLIHDLPEHMQ-KRNLAKRPKFTKQTVDQKIESLIEELGIS 492
Query: 1037 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 1096
PKIVD+T +TLTES++LC DEKD YLYYF+ +HPGR++VFCNSI VKRL L
Sbjct: 493 QPKIVDITSSQQTAQTLTESRLLCAIDEKDYYLYYFVQRHPGRSIVFCNSIDCVKRLATL 552
Query: 1097 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156
+L+C+PLPLHA+M Q+QRLKNL+RFRD + +L+ATDVAARGLDIP +EHVIHY VPR
Sbjct: 553 FGLLECNPLPLHANMIQKQRLKNLERFRDSSTGLLIATDVAARGLDIPNVEHVIHYQVPR 612
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIK 1216
TSE Y+HRSGRTARAN G+T++ +E E+ Y+++ +LE+ DLP FPI E L ++
Sbjct: 613 TSENYVHRSGRTARANKHGITVMFMEPGEVKSYVRLHKTLERTEDLPLFPISERFLGAVR 672
Query: 1217 KRIDLAKSIEYLESKIKKNRP-DNWL 1241
+R++LA+ ++ E K+++ + + W+
Sbjct: 673 ERVNLARELDKEELKLRRTQSEEGWM 698
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307190840|gb|EFN74688.1| ATP-dependent RNA helicase DDX24 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 254/512 (49%), Positives = 345/512 (67%), Gaps = 23/512 (4%)
Query: 756 DTSNNEDM-FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAE 814
DT++N+++ + + W +P +II+AL + F +PT IQ+ +P+A+L R+DI+GAAE
Sbjct: 122 DTNDNKNLEKINVEAWSSMGVPTSIIKALADQNFHSPTAIQAQTLPAAILGRRDILGAAE 181
Query: 815 TGSGKTLAFGIPILTGIVN----KLENPTEEDEN---DSGLEEEAEEVLEELEEESANTT 867
TGSGKTLAFGIPI+ GI++ +LE E+ + G E E E ES N
Sbjct: 182 TGSGKTLAFGIPIIKGILHLKKQQLEMSMSEESTKHKNKGSSSEIEARENEDISESENCV 241
Query: 868 EFVKKTR---------NKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK 918
V + LYALIL PTRELAIQ++NH+ A KYT +K+A V+GGM+ K
Sbjct: 242 HVVNNIKLDNCQNISIKPLYALILTPTRELAIQIKNHLTQAAKYTDIKIAVVLGGMAAVK 301
Query: 919 QLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 978
Q RIL+K P I++ATPGRLWE IQ G+ HL ++ I YL IDETDRM+E GHF EL ++L
Sbjct: 302 QERILSKGPEIVIATPGRLWELIQDGNSHLNQIDSIRYLAIDETDRMMEKGHFQELYDLL 361
Query: 979 DRVTMTETS-QPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPS--IKRLQDLL 1033
+++ + RQTFVFSATLT H + + L KK + K+ K P ++++ LL
Sbjct: 362 EKMNANPVKLEKRQTFVFSATLTMVHDIPDYLERKKKRYARSKIYKLTPGQKLQKIIHLL 421
Query: 1034 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRL 1093
IK+PK+VDLT++ G+ LTE +I C D KD YLYYF+ +H GRTLVFCNSI VKRL
Sbjct: 422 KIKNPKVVDLTKESGMADNLTECRIACTIDHKDYYLYYFLKKHNGRTLVFCNSIGCVKRL 481
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153
+ L ++L+C PLPLHASM QRQRLKNL+RF+ N +L+ATDVAARGLDIP IEHVIHY
Sbjct: 482 STLFSILECKPLPLHASMQQRQRLKNLERFQADENGLLIATDVAARGLDIPNIEHVIHYQ 541
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLS 1213
VPRTSE Y+HRSGRTARA EG+T++++E E Y K+ +L + DLP FP+ + +L
Sbjct: 542 VPRTSENYVHRSGRTARAEKEGITILMMEPSEKQNYSKLCKTLGRTHDLPTFPVVDRLLV 601
Query: 1214 LIKKRIDLAKSIEYLESKIKK-NRPDNWLHRS 1244
+K+R+D+A+ I+ LE K ++ N WL ++
Sbjct: 602 TVKERVDIARDIDKLELKCRRQNTQKTWLRKA 633
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322795046|gb|EFZ17894.1| hypothetical protein SINV_04950 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 249/505 (49%), Positives = 345/505 (68%), Gaps = 17/505 (3%)
Query: 754 EVDTSNNEDMF-VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGA 812
++D+S E + + + W +P +I+AL + F +PT IQ+ +P+A+L R+DI+GA
Sbjct: 125 DMDSSKKESLAEINIGAWSSMGVPAAVIKALADQNFHSPTMIQAQTLPAAILGRRDILGA 184
Query: 813 AETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEE--EAEEVLEELEEESANTTEFV 870
AETGSGKTLAFGIPI+ GI L+ ++ D + ++E E + E+L + N
Sbjct: 185 AETGSGKTLAFGIPIIKGI---LDLKSQNDGQNCPVKEIGETDSENEDLSQNCVNVVNNA 241
Query: 871 KKTRNK-----LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925
K + YALIL PTRELA+Q++NH+ A KYT +K+A V+GGM+ KQ RILNK
Sbjct: 242 KLDDHNTPIKPFYALILTPTRELAVQIKNHLTQAAKYTDIKIAIVLGGMAAVKQERILNK 301
Query: 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT- 984
P I++ATPGRLWE I+ G+ HL ++ + YL IDETDRM+E GHF EL +IL+++
Sbjct: 302 GPEIVIATPGRLWELIEEGNSHLNQIDSVRYLAIDETDRMMEKGHFQELHDILEKMNANP 361
Query: 985 ETSQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSK--GDPSIKRLQDLLNIKSPKI 1040
E + RQTFVFSATLT H L + L+ KK + K+ K D ++++ LL IK+PK+
Sbjct: 362 EKRKKRQTFVFSATLTMVHDLPDYLDKKKKRYARSKICKLTSDQKLQKIIQLLKIKNPKV 421
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML 1100
VDLT++ G+ LTE +I C D KD YLYYF+ +H GRTLVFCNSI VKRL L ++L
Sbjct: 422 VDLTKQSGMADNLTECRIACTIDHKDYYLYYFLKRHNGRTLVFCNSIGCVKRLATLFSIL 481
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 1160
+C PLPLHA+M QRQRLKNL+RF+ N +L+ATDVAARGLDIP IEHVIHY VPRT+E
Sbjct: 482 ECKPLPLHANMQQRQRLKNLERFQADENGLLIATDVAARGLDIPNIEHVIHYQVPRTAEN 541
Query: 1161 YIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRID 1220
Y+HRSGRTARA EG+T++++E E Y K+ +L + DLP FP+ + +L IK+R+D
Sbjct: 542 YVHRSGRTARAQKEGITVLIMEPSEKQNYTKLCKTLGRTHDLPVFPVIDKILITIKERVD 601
Query: 1221 LAKSIEYLESKIKK-NRPDNWLHRS 1244
+A+ I+ LE K ++ N +WL ++
Sbjct: 602 VARDIDKLELKSRRQNNQKSWLRKA 626
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|198458698|ref|XP_002138576.1| GA24853 [Drosophila pseudoobscura pseudoobscura] gi|198136429|gb|EDY69134.1| GA24853 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1273), Expect = e-136, Method: Compositional matrix adjust.
Identities = 263/594 (44%), Positives = 381/594 (64%), Gaps = 34/594 (5%)
Query: 672 RAEADKEKTEDINVTVSSKKKKLK-RKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEP 730
+AE +K E + +K+ K +K+N + + SE N ++P Q QSD+
Sbjct: 121 QAERHAQKLEKLKEKRQKRKESRKLKKENIEEEDGSESDDNEDNPSGQYVLLRPPQSDD- 179
Query: 731 HSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKT 790
+ ++ S+++E+ ++ ++ E +++ W +P I+RAL ++GFK
Sbjct: 180 --------ENEEAAEPSSDEEVPQLVPASTE-YKDELSAWNGLGVPSNILRALAEQGFKA 230
Query: 791 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN-KLEN------------ 837
PT+IQSM +P+A+ +KDI+GAAETGSGKTLAFGIP+L GI+ K N
Sbjct: 231 PTQIQSMTLPAAIHGKKDILGAAETGSGKTLAFGIPMLAGIMELKQRNASSGIRKAPKVK 290
Query: 838 -----PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
P +DE++ + + + +E ++ E ++ + LY L+L PTRELA+QV
Sbjct: 291 GAPIAPPADDEHELTPPPDELDHVSGASDEDSDAEEREQRKQTPLYGLVLTPTRELAVQV 350
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+NH++ A KYT +KVA + GG+S KQ R+L +CP I+VATPGRLWE G+ HL +L
Sbjct: 351 RNHLVSAAKYTGIKVAAIFGGLSVAKQERVLRQCPEIVVATPGRLWELFAQGNQHLNKLD 410
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETS-QPRQTFVFSATLT--HSLKNSLNL 1009
+++LVIDETDRM+E GHF EL+++L + E Q RQ FVFSATLT H L + +
Sbjct: 411 DLSFLVIDETDRMVEKGHFEELRSLLKVLNADEQKKQQRQNFVFSATLTLVHDLPDHMQK 470
Query: 1010 KKGQSKSKKVSKG-DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
+ + K V + D I+ L + L I PKIVD+T +TLTES++LC D+KD Y
Sbjct: 471 RNVGKRPKFVKQTVDQKIESLIEELGISQPKIVDITSTQQTAQTLTESRLLCPIDQKDFY 530
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
LYYFI +HPGRT+VFCNSI V+RL L +L CSPLPLHA+M Q+QRLKNL+RFRD
Sbjct: 531 LYYFIQRHPGRTIVFCNSIDCVRRLATLFGLLDCSPLPLHANMIQKQRLKNLERFRDCPT 590
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
+L+ATDVAARGLDIP +EHVIHY VPRTSE Y+HRSGRTARAN G+T++ +E E+
Sbjct: 591 GLLIATDVAARGLDIPNVEHVIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEVRS 650
Query: 1189 YIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
Y+K++ +LE+ DLP FPI E L+ +++R++LA+ ++ E K+K+ + + W+
Sbjct: 651 YVKLYKTLERTEDLPLFPISERFLAGVRERVNLARDLDKEELKLKRVQSERGWM 704
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189239044|ref|XP_969373.2| PREDICTED: similar to CG9143 CG9143-PA [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 250/483 (51%), Positives = 331/483 (68%), Gaps = 43/483 (8%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
W F +P++II+AL +GF PT IQS+ +P+A+L R+DIVGAAETGSGKTLAFG+PI+
Sbjct: 103 WSNFGLPDSIIKALVLQGFNEPTLIQSLSLPAAVLGRRDIVGAAETGSGKTLAFGLPIVA 162
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
GI+N+ ++ V + KLYAL+L PTRELA
Sbjct: 163 GILNE-------------------------------KSKVVGNSDKKLYALVLTPTRELA 191
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
+QV++H+ K+T + +A V+GGM+ KQ RIL+K P I+VATPGRLWE IQ G+ HL+
Sbjct: 192 VQVRDHLKAIVKFTDINIAVVLGGMAAVKQERILSKRPEIVVATPGRLWELIQQGNEHLS 251
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET-SQPRQTFVFSATLT--HSLKNS 1006
++ I YL IDETDRM+E GHF EL NIL+R+ + +T ++ RQ FVFSATLT H
Sbjct: 252 QINDIRYLAIDETDRMLEKGHFEELHNILERLNLDKTRAKQRQNFVFSATLTLVH----- 306
Query: 1007 LNLKKGQSKSKKVSKGDPS--IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 1064
+L K + KVSK P + R+ L IK+PKIVD+++ TLTES+I C +E
Sbjct: 307 -DLPKYRFNKSKVSKMTPQQKLSRIMTDLGIKNPKIVDISQGGNTPATLTESRISCGIEE 365
Query: 1065 KDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 1124
KD Y+YYF+ +HPGRTL+FCNSI V+RL LL +L C PLPLHASM QRQRLKNL+RFR
Sbjct: 366 KDYYVYYFLQKHPGRTLIFCNSIGCVRRLANLLGILGCRPLPLHASMQQRQRLKNLERFR 425
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
D + IL+ATDVAARGLDIP IEHV+HY PRTSE Y+HRSGRTARA +GLT+VL+E
Sbjct: 426 DDEHGILVATDVAARGLDIPKIEHVLHYQTPRTSESYVHRSGRTARATQQGLTVVLMEPS 485
Query: 1185 EIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKK-NRPDNWLHR 1243
EI YIK+ +L + DLP FP+ E L +K+R++LA+ ++ LE +I+K N + WL +
Sbjct: 486 EIQNYIKICKTLNRSEDLPIFPVQEEYLKAVKQRVNLARELDKLELQIRKGNSEEGWLRK 545
Query: 1244 SGR 1246
+ +
Sbjct: 546 AAK 548
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270010898|gb|EFA07346.1| hypothetical protein TcasGA2_TC015943 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 258/524 (49%), Positives = 349/524 (66%), Gaps = 47/524 (8%)
Query: 733 KKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAE----WVKFNIPETIIRALYQKGF 788
K K+K+K + +K+ V+T + +Q ++ W F +P++II+AL +GF
Sbjct: 60 KPAKKKRKVSSVALTPSKQGSSVETRVEINEKIQKSDSYLVWSNFGLPDSIIKALVLQGF 119
Query: 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848
PT IQS+ +P+A+L R+DIVGAAETGSGKTLAFG+PI+ GI+N+
Sbjct: 120 NEPTLIQSLSLPAAVLGRRDIVGAAETGSGKTLAFGLPIVAGILNE-------------- 165
Query: 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVA 908
++ V + KLYAL+L PTRELA+QV++H+ K+T + +A
Sbjct: 166 -----------------KSKVVGNSDKKLYALVLTPTRELAVQVRDHLKAIVKFTDINIA 208
Query: 909 CVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES 968
V+GGM+ KQ RIL+K P I+VATPGRLWE IQ G+ HL+++ I YL IDETDRM+E
Sbjct: 209 VVLGGMAAVKQERILSKRPEIVVATPGRLWELIQQGNEHLSQINDIRYLAIDETDRMLEK 268
Query: 969 GHFPELKNILDRVTMTET-SQPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKGDPS 1025
GHF EL NIL+R+ + +T ++ RQ FVFSATLT H +L K + KVSK P
Sbjct: 269 GHFEELHNILERLNLDKTRAKQRQNFVFSATLTLVH------DLPKYRFNKSKVSKMTPQ 322
Query: 1026 --IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 1083
+ R+ L IK+PKIVD+++ TLTES+I C +EKD Y+YYF+ +HPGRTL+F
Sbjct: 323 QKLSRIMTDLGIKNPKIVDISQGGNTPATLTESRISCGIEEKDYYVYYFLQKHPGRTLIF 382
Query: 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
CNSI V+RL LL +L C PLPLHASM QRQRLKNL+RFRD + IL+ATDVAARGLDI
Sbjct: 383 CNSIGCVRRLANLLGILGCRPLPLHASMQQRQRLKNLERFRDDEHGILVATDVAARGLDI 442
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLP 1203
P IEHV+HY PRTSE Y+HRSGRTARA +GLT+VL+E EI YIK+ +L + DLP
Sbjct: 443 PKIEHVLHYQTPRTSESYVHRSGRTARATQQGLTVVLMEPSEIQNYIKICKTLNRSEDLP 502
Query: 1204 DFPIDESVLSLIKKRIDLAKSIEYLESKIKK-NRPDNWLHRSGR 1246
FP+ E L +K+R++LA+ ++ LE +I+K N + WL ++ +
Sbjct: 503 IFPVQEEYLKAVKQRVNLARELDKLELQIRKGNSEEGWLRKAAK 546
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195154787|ref|XP_002018294.1| GL17630 [Drosophila persimilis] gi|194114090|gb|EDW36133.1| GL17630 [Drosophila persimilis] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 243/499 (48%), Positives = 339/499 (67%), Gaps = 23/499 (4%)
Query: 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
+++ W +P I+RAL ++GFK PT+IQSM +P+A+ +KDI+GAAETGSGKTLAFGI
Sbjct: 206 ELSAWNGLGVPSNILRALAEQGFKAPTQIQSMTLPAAIHGKKDILGAAETGSGKTLAFGI 265
Query: 826 PILTGIVN-KLEN-----------------PTEEDENDSGLEEEAEEVLEELEEESANTT 867
P+L GI+ K N P +DE++ + + + +E ++
Sbjct: 266 PMLAGIMELKQRNASSGIRKAPKVKGAPIAPPADDEHELTPPPDELDHVSGASDEDSDAE 325
Query: 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927
E ++ + LY L+L PTRELA+QV+NH++ A KYT +KVA + GG+S KQ R+L +CP
Sbjct: 326 EREQRKQTPLYGLVLTPTRELAVQVKNHLVSAAKYTGIKVAAIFGGLSVAKQERVLRQCP 385
Query: 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 987
I+VATPGRLWE G+ HL +L +++LVIDETDRM+E GHF EL+++L + E
Sbjct: 386 EIVVATPGRLWELFAQGNQHLNKLDDLSFLVIDETDRMVEKGHFEELRSLLKVLNADEQK 445
Query: 988 -QPRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG-DPSIKRLQDLLNIKSPKIVDL 1043
Q RQ FVFSATLT H L + + + + K V + D I+ L + L I PKIVD+
Sbjct: 446 KQQRQNFVFSATLTLVHDLPDHMQKRNVGKRPKFVKQTVDQKIESLIEELGISQPKIVDI 505
Query: 1044 TEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS 1103
T +TLTES++LC D+KD YLYYFI +HPGRT+VFCNSI V+RL + +L CS
Sbjct: 506 TSTQQTAQTLTESRLLCPIDQKDFYLYYFIQRHPGRTIVFCNSIDCVRRLATIFGLLDCS 565
Query: 1104 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163
PLPLHA+M Q+QRLKNL+RFRD +L+ATDVAARGLDIP +EHVIHY VPRTSE Y+H
Sbjct: 566 PLPLHANMIQKQRLKNLERFRDCPTGLLIATDVAARGLDIPNVEHVIHYQVPRTSENYVH 625
Query: 1164 RSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223
RSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP FPI E L+ +++R++LA+
Sbjct: 626 RSGRTARANKHGITVMFMEPGEVRSYVKLYKTLERTEDLPLFPISERFLAGVRERVNLAR 685
Query: 1224 SIEYLESKIKKNRPD-NWL 1241
++ E K+K+ + + W+
Sbjct: 686 DLDKEELKLKRVQSERGWM 704
|
Source: Drosophila persimilis Species: Drosophila persimilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|56201305|dbj|BAD72907.1| unnamed protein product [Drosophila simulans] gi|56201324|dbj|BAD72925.1| unnamed protein product [Drosophila sechellia] | Back alignment and taxonomy information |
|---|
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 243/514 (47%), Positives = 344/514 (66%), Gaps = 28/514 (5%)
Query: 751 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 810
EL+ + T ED+ + W +P +I+RAL ++GFKTPT+IQ++ +P+A+ +KDI+
Sbjct: 203 ELVSIPTDEAEDV----SAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGKKDIL 258
Query: 811 GAAETGSGKTLAFGIPILTGIV------------------NKLENPTEEDENDSGLEEEA 852
GAAETGSGKTLAFGIP+L GI+ + P ++ + EE
Sbjct: 259 GAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPPPEEL 318
Query: 853 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVG 912
+ V +EES + E ++ + LY L+L PTRELA+QV+NH++ A KYT ++VA + G
Sbjct: 319 DHVSGASDEES-DAEEHTQRVQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFG 377
Query: 913 GMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFP 972
G++ KQ R+L +CP I+VATPGRLWE G+ HL ++ +++LVIDETDRM+E GHF
Sbjct: 378 GLAVAKQERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFE 437
Query: 973 ELKNILDRVTMTETSQ-PRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG-DPSIKR 1028
EL+++L + E + RQ FV+SATLT H L + + + + K V + D I+
Sbjct: 438 ELRSLLKVLNSDEQKKHQRQNFVYSATLTLVHDLPDHMQKRNVGKRPKFVKQSVDQKIES 497
Query: 1029 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 1088
L + L I PKIVD+T +TLTES++LC D KD +LYYFI +HPGRT+VFCNSI
Sbjct: 498 LIEELGISQPKIVDITSSQQTAQTLTESRLLCPIDHKDYHLYYFIQRHPGRTIVFCNSID 557
Query: 1089 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 1148
VKRL L +L C+PLPLHA+M Q+QRLKNL+RFRD +L+ATDVAARGLDIP +EH
Sbjct: 558 CVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEH 617
Query: 1149 VIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID 1208
VIHY VPRTSE Y+HRSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP FPI
Sbjct: 618 VIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLERTEDLPLFPIS 677
Query: 1209 ESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
E L +++R++LA+ ++ E K+K+ + + W+
Sbjct: 678 ERFLGAVRERVNLARDLDKEELKLKRVQSERGWM 711
|
Source: Drosophila simulans Species: Drosophila simulans Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195336062|ref|XP_002034666.1| GM19796 [Drosophila sechellia] gi|194126636|gb|EDW48679.1| GM19796 [Drosophila sechellia] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1264), Expect = e-135, Method: Compositional matrix adjust.
Identities = 243/514 (47%), Positives = 344/514 (66%), Gaps = 28/514 (5%)
Query: 751 ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIV 810
EL+ + T ED+ + W +P +I+RAL ++GFKTPT+IQ++ +P+A+ +KDI+
Sbjct: 203 ELVSIPTDEAEDV----SAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGKKDIL 258
Query: 811 GAAETGSGKTLAFGIPILTGIV------------------NKLENPTEEDENDSGLEEEA 852
GAAETGSGKTLAFGIP+L GI+ + P ++ + EE
Sbjct: 259 GAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPPPEEL 318
Query: 853 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVG 912
+ V +EES + E ++ + LY L+L PTRELA+QV+NH++ A KYT ++VA + G
Sbjct: 319 DHVSGASDEES-DAEEHTQRVQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFG 377
Query: 913 GMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFP 972
G++ KQ R+L +CP I+VATPGRLWE G+ HL ++ +++LVIDETDRM+E GHF
Sbjct: 378 GLAVAKQERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFE 437
Query: 973 ELKNILDRVTMTETSQ-PRQTFVFSATLT--HSLKNSLNLKKGQSKSKKVSKG-DPSIKR 1028
EL+++L + E + RQ FV+SATLT H L + + + + K V + D I+
Sbjct: 438 ELRSLLKVLNSDEQKKHQRQNFVYSATLTLVHDLPDHMQKRNVGKRPKFVKQTVDQKIES 497
Query: 1029 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 1088
L + L I PKIVD+T +TLTES++LC D KD +LYYFI +HPGRT+VFCNSI
Sbjct: 498 LIEELGISQPKIVDITSSQQTAQTLTESRLLCPIDHKDYHLYYFIQRHPGRTIVFCNSID 557
Query: 1089 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 1148
VKRL L +L C+PLPLHA+M Q+QRLKNL+RFRD +L+ATDVAARGLDIP +EH
Sbjct: 558 CVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEH 617
Query: 1149 VIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID 1208
VIHY VPRTSE Y+HRSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP FPI
Sbjct: 618 VIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLERTEDLPLFPIS 677
Query: 1209 ESVLSLIKKRIDLAKSIEYLESKIKKNRPD-NWL 1241
E L +++R++LA+ ++ E K+K+ + + W+
Sbjct: 678 ERFLGAVRERVNLARDLDKEELKLKRVQSERGWM 711
|
Source: Drosophila sechellia Species: Drosophila sechellia Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1493 | ||||||
| FB|FBgn0034496 | 813 | CG9143 [Drosophila melanogaste | 0.254 | 0.467 | 0.490 | 1.9e-124 | |
| UNIPROTKB|F1SCG7 | 856 | LOC100620190 "Uncharacterized | 0.246 | 0.429 | 0.478 | 1.9e-110 | |
| MGI|MGI:1351337 | 857 | Ddx24 "DEAD (Asp-Glu-Ala-Asp) | 0.247 | 0.430 | 0.485 | 3.8e-109 | |
| UNIPROTKB|A6H7B6 | 852 | DDX24 "DDX24 protein" [Bos tau | 0.246 | 0.431 | 0.478 | 4.7e-109 | |
| UNIPROTKB|G3V529 | 816 | DDX24 "ATP-dependent RNA helic | 0.246 | 0.450 | 0.481 | 6.3e-109 | |
| UNIPROTKB|Q9GZR7 | 859 | DDX24 "ATP-dependent RNA helic | 0.246 | 0.428 | 0.481 | 6.3e-109 | |
| RGD|727929 | 851 | Ddx24 "DEAD (Asp-Glu-Ala-Asp) | 0.246 | 0.432 | 0.483 | 1.6e-108 | |
| UNIPROTKB|E2RIC4 | 818 | DDX24 "Uncharacterized protein | 0.246 | 0.449 | 0.483 | 3.2e-108 | |
| UNIPROTKB|F1NJ62 | 851 | F1NJ62 "Uncharacterized protei | 0.247 | 0.433 | 0.490 | 4e-106 | |
| DICTYBASE|DDB_G0281841 | 940 | ddx24 "DEAD/DEAH box helicase" | 0.237 | 0.377 | 0.373 | 1.2e-96 |
| FB|FBgn0034496 CG9143 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 975 (348.3 bits), Expect = 1.9e-124, Sum P(3) = 1.9e-124
Identities = 189/385 (49%), Positives = 263/385 (68%)
Query: 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 923
++ E ++ + LY L+L PTRELA+QV+NH++ A KYT ++VA + GG++ KQ R+L
Sbjct: 328 SDAEEQAQRVQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQERVL 387
Query: 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM 983
+CP I+VATPGRLWE G+ HL ++ +++LVIDETDRM+E GHF EL+++L +
Sbjct: 388 RQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEELRSLLKVLNS 447
Query: 984 TETSQ-PRQTFVFSATLT--HXXXXXXXXXXXXXX-XXXXXXXDPSIKRLQDLLNIKSPK 1039
E + RQ FV+SATLT H D I+ L + L I PK
Sbjct: 448 DEQKKHQRQNFVYSATLTLVHDLPDHMQKRNVGKRPKFVKQTVDQKIESLIEELGISQPK 507
Query: 1040 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM 1099
IVD+T +TLTES++LC D KD +LYYFI +HPGRT+VFCNSI VKRL L +
Sbjct: 508 IVDITSSQQTAQTLTESRLLCPIDHKDYHLYYFIQRHPGRTIVFCNSIDCVKRLATLFGL 567
Query: 1100 LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159
L C+PLPLHA+M Q+QRLKNL+RFRD +L+ATDVAARGLDIP +EHVIHY VPRTSE
Sbjct: 568 LDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEHVIHYQVPRTSE 627
Query: 1160 IYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1219
Y+HRSGRTARAN G+T++ +E E+ Y+K++ +LE+ DLP FPI E + +++R+
Sbjct: 628 NYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLERTEDLPLFPILERFMGAVRERV 687
Query: 1220 DLAKSIEYLESKIKKNRPDN-WLHR 1243
+LA+ ++ E K+K+ + + W+ +
Sbjct: 688 NLARDLDKEELKLKRVQSERGWMKK 712
|
|
| UNIPROTKB|F1SCG7 LOC100620190 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 1.9e-110, Sum P(4) = 1.9e-110
Identities = 179/374 (47%), Positives = 253/374 (67%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ L L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+LN+ P I++AT
Sbjct: 382 KRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVIAT 441
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE ++ HL+ L ++ LVIDE DRM+E GHF EL +L+ + ++ + RQT
Sbjct: 442 PGRLWELVKEKQPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTL 501
Query: 994 VFSATLT--HXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITK 1051
VFSATLT H D ++++ + K PK++DLT +
Sbjct: 502 VFSATLTLVHQAPARILHKKHAKKIDKTAKLDLLMQKIG--MRGK-PKVIDLTRNEATVE 558
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
TLTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL +L PL LHA M
Sbjct: 559 TLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHACM 618
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA
Sbjct: 619 HQKQRLRNLEQFAHLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARA 678
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
NEGL+L+L+ +++ + K++ +L+K D+P FP+ + +K+RI LA+ IE E +
Sbjct: 679 TNEGLSLMLVGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIRLARQIEKAEYR 738
Query: 1232 -IKKNRPDNWLHRS 1244
+ ++W+ ++
Sbjct: 739 NFQACLHNSWIEQA 752
|
|
| MGI|MGI:1351337 Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 895 (320.1 bits), Expect = 3.8e-109, Sum P(3) = 3.8e-109
Identities = 181/373 (48%), Positives = 253/373 (67%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
R L L+L PTRELAIQV+ HI K+T + A +VGGMST+KQ R+LN+ P I++AT
Sbjct: 385 RRPLLGLVLTPTRELAIQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIAT 444
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE ++ H HL+ L ++ LVIDE DRM+E GHF EL +L+ + ++ + RQT
Sbjct: 445 PGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEMLNDSQYNPSRQTL 504
Query: 994 VFSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKS-PKIVDLTEKIGITKT 1052
VFSATLT D + L + ++ PK++DLT G +T
Sbjct: 505 VFSATLT-LVHQAPARILHKKHVKKMDKTD-KLDLLMQKVGMRGKPKVIDLTRNEGTVET 562
Query: 1053 LTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 1112
LTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M+
Sbjct: 563 LTETKIHCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDVMPLTLHACMH 622
Query: 1113 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172
Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIYIHRSGRTARA
Sbjct: 623 QKQRLRNLEQFARLQDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYIHRSGRTARAA 682
Query: 1173 NEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK- 1231
+EGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 683 SEGLSLMLIGPEDVINFKKIYKTLQKDEDIPLFPVQSKYMDVVKERIRLARQIEKAEYRN 742
Query: 1232 IKKNRPDNWLHRS 1244
+ ++W+ ++
Sbjct: 743 FQACLHNSWIEQA 755
|
|
| UNIPROTKB|A6H7B6 DDX24 "DDX24 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 900 (321.9 bits), Expect = 4.7e-109, Sum P(3) = 4.7e-109
Identities = 179/374 (47%), Positives = 256/374 (68%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ L L+L PTRELA+QV+ H+ K+T +K A +VGGMST+KQ R+LN+ P I++AT
Sbjct: 380 KRPLLGLVLTPTRELAVQVKQHVDAVAKFTSIKTAILVGGMSTQKQQRMLNRQPEIVIAT 439
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE ++ H HL+ L ++ LVIDE DRM+E GHF EL +L+ ++ ++ + RQT
Sbjct: 440 PGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEMLSDSQYNPKRQTL 499
Query: 994 VFSATLT--HXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITK 1051
VFSATLT H D ++++ + K PK++DLT K +
Sbjct: 500 VFSATLTLVHQAPARILHKKHAKKMDKTAKLDLLMQKIG--MRGK-PKVIDLTRKEATVE 556
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
TLTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL +L PL LHA M
Sbjct: 557 TLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHACM 616
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA
Sbjct: 617 HQKQRLRNLEQFAHLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARA 676
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+EGL+L+L+ +++ + K++ +L+K D+P FP+ + +K+RI LA+ IE E +
Sbjct: 677 TSEGLSLMLVGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIRLARQIEKAEYR 736
Query: 1232 -IKKNRPDNWLHRS 1244
+ ++W+ ++
Sbjct: 737 NFQACLHNSWIEQA 750
|
|
| UNIPROTKB|G3V529 DDX24 "ATP-dependent RNA helicase DDX24" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 899 (321.5 bits), Expect = 6.3e-109, Sum P(3) = 6.3e-109
Identities = 180/374 (48%), Positives = 255/374 (68%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ L L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VAT
Sbjct: 342 KRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVAT 401
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE I+ H+HL L ++ LV+DE DRM+E GHF EL +L+ + ++ + RQT
Sbjct: 402 PGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTL 461
Query: 994 VFSATLT--HXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITK 1051
VFSATLT H D ++++ + K PK++DLT +
Sbjct: 462 VFSATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKIG--MRGK-PKVIDLTRNEATVE 518
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M
Sbjct: 519 TLTETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACM 578
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA
Sbjct: 579 HQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARA 638
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 639 TNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIRLARQIEKSEYR 698
Query: 1232 -IKKNRPDNWLHRS 1244
+ ++W+ ++
Sbjct: 699 NFQACLHNSWIEQA 712
|
|
| UNIPROTKB|Q9GZR7 DDX24 "ATP-dependent RNA helicase DDX24" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 899 (321.5 bits), Expect = 6.3e-109, Sum P(3) = 6.3e-109
Identities = 180/374 (48%), Positives = 255/374 (68%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ L L+L PTRELA+QV+ HI ++T +K A +VGGMST+KQ R+LN+ P I+VAT
Sbjct: 385 KRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVAT 444
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE I+ H+HL L ++ LV+DE DRM+E GHF EL +L+ + ++ + RQT
Sbjct: 445 PGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTL 504
Query: 994 VFSATLT--HXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITK 1051
VFSATLT H D ++++ + K PK++DLT +
Sbjct: 505 VFSATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKIG--MRGK-PKVIDLTRNEATVE 561
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M
Sbjct: 562 TLTETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACM 621
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA
Sbjct: 622 HQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARA 681
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
NEGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 682 TNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIRLARQIEKSEYR 741
Query: 1232 -IKKNRPDNWLHRS 1244
+ ++W+ ++
Sbjct: 742 NFQACLHNSWIEQA 755
|
|
| RGD|727929 Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 1.6e-108, Sum P(3) = 1.6e-108
Identities = 181/374 (48%), Positives = 254/374 (67%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
R L L+L PTRELA+QV+ HI K+T + A +VGGMST+KQ R+LN+ P I++AT
Sbjct: 379 RRPLLGLVLTPTRELAVQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIAT 438
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE I+ H HL+ L ++ LVIDE DRM+E HF EL +L+ + ++ + RQT
Sbjct: 439 PGRLWELIKEKHPHLSNLRQLRCLVIDEADRMVEKDHFAELSQLLEMLNDSQYNPNRQTL 498
Query: 994 VFSATLT--HXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITK 1051
VFSATLT H D ++++ + K PK++DLT G +
Sbjct: 499 VFSATLTLVHQAPARILHKKHVKKMDKTAKLDLLMQKIG--MRGK-PKVIDLTRNEGTVE 555
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
TLTE+KI C+ DEKD YLYYF++Q+PGR+LVF NSIS +KRL+ LL +L PL LHA M
Sbjct: 556 TLTETKIHCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACM 615
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIYIHRSGRTARA
Sbjct: 616 HQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYIHRSGRTARA 675
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
+EGL+L+LI +++ + K++ +L+K D+P FP+ + ++K+RI LA+ IE E +
Sbjct: 676 TSEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQSKYMDMVKERIRLARQIEKAEYR 735
Query: 1232 -IKKNRPDNWLHRS 1244
+ ++W+ ++
Sbjct: 736 NFQACLHNSWIEQA 749
|
|
| UNIPROTKB|E2RIC4 DDX24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 896 (320.5 bits), Expect = 3.2e-108, Sum P(3) = 3.2e-108
Identities = 181/374 (48%), Positives = 253/374 (67%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ L L+L PTRELA+QV+ HI K+T +K A +VGGMST+KQ R+LN+ P I+VAT
Sbjct: 344 KRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVVAT 403
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE I+ H HL+ L ++ LV+DE DRM+E GHF EL +L+ + ++ + RQT
Sbjct: 404 PGRLWELIKEKHPHLSNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLGDSQYNPKRQTL 463
Query: 994 VFSATLT--HXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKSPKIVDLTEKIGITK 1051
+FSATLT H D ++++ + K PK++DLT +
Sbjct: 464 IFSATLTLVHQAPARILHKKHTKKIDKTAKLDLFVQKIG--MRGK-PKVIDLTRNEATVE 520
Query: 1052 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASM 1111
TLTE+KI C+ DEKD YLYYF++Q+PGRTLVF NSIS +KRL+ LL +L PL LHA M
Sbjct: 521 TLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHACM 580
Query: 1112 NQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
+Q+QRL+NL++F + +LLATDVAARGLDIP ++HVIHY VPRTSEIY+HRSGRTARA
Sbjct: 581 HQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARA 640
Query: 1172 NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESK 1231
NEGL+L+LI ++ + K++ +L+K D+P FP+ + +K+RI LA+ IE E +
Sbjct: 641 TNEGLSLMLIGPEDAINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIHLARQIEKAEYR 700
Query: 1232 -IKKNRPDNWLHRS 1244
+ ++W+ ++
Sbjct: 701 NFQACLHNSWIEQA 714
|
|
| UNIPROTKB|F1NJ62 F1NJ62 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 939 (335.6 bits), Expect = 4.0e-106, Sum P(2) = 4.0e-106
Identities = 183/373 (49%), Positives = 259/373 (69%)
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
+ L L+L PTRELA+QV++HI K+T +K A +VGGM+ +KQ R+LN+ P I++AT
Sbjct: 391 KRPLLGLVLTPTRELAVQVKHHIDAVAKFTGIKTAILVGGMAAQKQERVLNRKPEIVIAT 450
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGRLWE I+ H HL+ L ++ LVIDE DRM+E GHF EL +L+ + ++ + RQTF
Sbjct: 451 PGRLWELIKERHPHLSNLRQLRCLVIDEADRMVERGHFLELSQLLEVLNDSQYNPKRQTF 510
Query: 994 VFSATLTHXXXXXXXXXXXXXXXXXXXXXDPSIKRLQDLLNIKS-PKIVDLTEKIGITKT 1052
VFSATLT ++ L + + IK PK++DLT K +T
Sbjct: 511 VFSATLT--LVHQTPARILQKKNAKKIDKKTKLEMLMEKVGIKGKPKVIDLTRKEATVET 568
Query: 1053 LTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 1112
L E++I C +EKD YLYYF+LQ+PGRT+VF NSI +KRL+ LLT+L C P PLHA+M+
Sbjct: 569 LMETRIHCDTNEKDYYLYYFLLQYPGRTMVFANSIDCIKRLSSLLTILNCDPFPLHANMH 628
Query: 1113 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172
Q+QRLKNL+RF ++ + +LL TDVAARGLDIP ++HVIHY VPRTSE+Y+HRSGRTARA
Sbjct: 629 QKQRLKNLERFAERESCVLLTTDVAARGLDIPNVQHVIHYQVPRTSELYVHRSGRTARAA 688
Query: 1173 NEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLES-K 1231
NEGL+L+LI D++ + K++ +L+K +LP FP++ ++ IK+R++LA+ IE E
Sbjct: 689 NEGLSLLLIGPDDLINFRKIYKTLQKSEELPLFPVETKYMTAIKERVNLARQIEKAEFFN 748
Query: 1232 IKKNRPDNWLHRS 1244
+ + D+WL ++
Sbjct: 749 GRAKQHDSWLQQA 761
|
|
| DICTYBASE|DDB_G0281841 ddx24 "DEAD/DEAH box helicase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 574 (207.1 bits), Expect = 1.2e-96, Sum P(2) = 1.2e-96
Identities = 139/372 (37%), Positives = 204/372 (54%)
Query: 960 DETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHXXXXXXXXXXXXXXXXXX 1019
D+ D I EL+ + T+ RQTFVFSATL +
Sbjct: 552 DDMDDQIPDEEMEELEQ--EEQNHLTTTHKRQTFVFSATLVNIPGDGAPTSQKKKYRKLT 609
Query: 1020 XXXDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 1079
P ++ + + K++D+T+K K L E+KI C +EKD YLYYF+ ++PGR
Sbjct: 610 ----PIENLIEKVRFQRDYKLIDVTQKRLTAKNLLETKIFCNLEEKDMYLYYFVERYPGR 665
Query: 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139
TLVF NSI +RL + +L+ LHA M Q+QRLKNLDRFR +N +L+ATDVAAR
Sbjct: 666 TLVFVNSIDCARRLIPIFNILEVPVFALHAQMQQKQRLKNLDRFRTLDNVVLIATDVAAR 725
Query: 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
GLDIP ++HVIHY VPRT+++YIHRSGRTAR++ +G+++VL+ E PLYIK+ +S+E
Sbjct: 726 GLDIPLVQHVIHYQVPRTTQLYIHRSGRTARSDQDGISVVLVTPKERPLYIKLDSSIEH- 784
Query: 1200 VDLPDFPIDESVLSLIKKRIDLAKSIEYLESK-IKKNRPDNWLHRSGRTARANNEGLTLV 1258
D+ +FP D + ++ RI+LAK I+ L + +K NR +W + +G
Sbjct: 785 -DIGNFPTDIRYMEGVRDRIELAKEIDKLSHQSLKDNREKSWFKKQAEEMDIELDGDFFG 843
Query: 1259 LIESDE------IPLYIKMFNSLEKKVDLPDFPIDESVLSL-IKKRIDLAKSIEYLESKI 1311
DE I K F + + L + S+L + + A +I+ LESK
Sbjct: 844 ENSDDEQSEDTRIAEQKKQFKLKQLRAQLKHL-LSRSLLPRGVSQSYITASAIQELESKS 902
Query: 1312 KKNRPDNWLEKA 1323
+ + ++ KA
Sbjct: 903 QSSAATDFSNKA 914
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | 0.737 |
| 3rd Layer | 3.6.4 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1493 | |||
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 1e-90 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 5e-63 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 1e-58 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 2e-55 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 3e-55 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 1e-54 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 3e-50 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 2e-46 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 7e-45 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 2e-44 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 3e-43 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 7e-40 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 4e-36 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 8e-35 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 1e-34 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 6e-34 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 1e-33 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 2e-33 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 2e-33 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 3e-30 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 7e-30 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 1e-29 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 1e-28 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 2e-28 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 1e-27 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 4e-27 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 5e-27 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 2e-26 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 2e-26 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 4e-26 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 1e-25 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 1e-25 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 6e-25 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 4e-24 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 1e-23 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 4e-23 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 4e-23 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 8e-22 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 5e-20 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 2e-17 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 3e-17 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 8e-17 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 4e-15 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 6e-15 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 1e-14 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 1e-14 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 2e-14 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 3e-14 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 3e-13 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 7e-13 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 1e-11 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 2e-11 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 3e-11 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 6e-11 | |
| TIGR01389 | 591 | TIGR01389, recQ, ATP-dependent DNA helicase RecQ | 8e-11 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 1e-10 | |
| TIGR01389 | 591 | TIGR01389, recQ, ATP-dependent DNA helicase RecQ | 1e-09 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 4e-09 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 6e-09 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 6e-09 | |
| COG0514 | 590 | COG0514, RecQ, Superfamily II DNA helicase [DNA re | 7e-09 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 4e-08 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 1e-07 | |
| TIGR00614 | 470 | TIGR00614, recQ_fam, ATP-dependent DNA helicase, R | 1e-07 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 2e-07 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 2e-07 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 2e-07 | |
| COG0514 | 590 | COG0514, RecQ, Superfamily II DNA helicase [DNA re | 3e-07 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 6e-07 | |
| TIGR00614 | 470 | TIGR00614, recQ_fam, ATP-dependent DNA helicase, R | 8e-07 | |
| PRK11057 | 607 | PRK11057, PRK11057, ATP-dependent DNA helicase Rec | 8e-07 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 1e-06 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 1e-06 | |
| PRK11057 | 607 | PRK11057, PRK11057, ATP-dependent DNA helicase Rec | 3e-06 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 5e-06 | |
| pfam13307 | 165 | pfam13307, Helicase_C_2, Helicase C-terminal domai | 6e-06 | |
| pfam13307 | 165 | pfam13307, Helicase_C_2, Helicase C-terminal domai | 6e-06 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 2e-05 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 4e-05 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 6e-05 | |
| COG1199 | 654 | COG1199, DinG, Rad3-related DNA helicases [Transcr | 1e-04 | |
| COG1199 | 654 | COG1199, DinG, Rad3-related DNA helicases [Transcr | 1e-04 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 3e-04 | |
| PRK09401 | 1176 | PRK09401, PRK09401, reverse gyrase; Reviewed | 0.001 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 0.002 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 303 bits (778), Expect = 1e-90
Identities = 139/520 (26%), Positives = 227/520 (43%), Gaps = 83/520 (15%)
Query: 738 KKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSM 797
++ K V S E+ E+ + +++AL GF+ PT IQ
Sbjct: 1 LAREDYDRFVKLKSAHNVALSRGEEKT--PPEFASLGLSPELLQALKDLGFEEPTPIQLA 58
Query: 798 VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 857
+P +LA +D++G A+TG+GKT AF +P+L I+
Sbjct: 59 AIP-LILAGRDVLGQAQTGTGKTAAFLLPLLQKIL------------------------- 92
Query: 858 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMST 916
R + ALILAPTRELA+Q+ + GK ++VA V GG+S
Sbjct: 93 ------------KSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSI 140
Query: 917 EKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKN 976
KQ+ L + I+VATPGRL + I+ G L + LV+DE DRM++ G +++
Sbjct: 141 RKQIEALKRGVDIVVATPGRLLDLIKRGKLDL---SGVETLVLDEADRMLDMGFIDDIEK 197
Query: 977 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 1036
IL + RQT +FSAT+ +++++ + L D + I+
Sbjct: 198 ILKALPP-----DRQTLLFSATMP-------------DDIRELAR-----RYLNDPVEIE 234
Query: 1037 SPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLT 1094
V + + K + + + + +EK L + + GR +VF + V+ L
Sbjct: 235 ----VSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELA 290
Query: 1095 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 1154
+ L LH + Q +R + L++F+D +L+ATDVAARGLDIP + HVI+Y +
Sbjct: 291 ESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDL 350
Query: 1155 PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK-----MFNSLEKKVDLPDFPIDE 1209
P E Y+HR GRT RA +G+ + + +E +K + L V LP ++
Sbjct: 351 PLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEPED 410
Query: 1210 SVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTAR 1249
K +E + + ++
Sbjct: 411 -----AKLLKTTRPGLEEESDISDEIKKLKSSKKALLRGL 445
|
Length = 513 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 222 bits (568), Expect = 5e-63
Identities = 126/403 (31%), Positives = 186/403 (46%), Gaps = 79/403 (19%)
Query: 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846
G+ T IQ+ +P A+LA KD++ A+TGSGKT AFG+ +L KL
Sbjct: 23 GYTEMTPIQAQSLP-AILAGKDVIAQAKTGSGKTAAFGLGLL----QKL----------- 66
Query: 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-V 905
+ F ++ AL+L PTRELA QV I ++ P +
Sbjct: 67 ------------------DVKRF------RVQALVLCPTRELADQVAKEIRRLARFIPNI 102
Query: 906 KVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRM 965
KV + GG+ Q+ L HI+V TPGR+ + ++ G L L N LV+DE DRM
Sbjct: 103 KVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDAL---NTLVLDEADRM 159
Query: 966 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 1025
++ G + I+ + RQT +FSAT
Sbjct: 160 LDMGFQDAIDAIIRQ-----APARRQTLLFSATYP-----------------------EG 191
Query: 1026 IKRL--QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLV 1082
I + + + K+ + I + E DE+ L +L H P +V
Sbjct: 192 IAAISQRFQRDPVEVKVESTHDLPAIEQRFYE----VSPDERLPALQRLLLHHQPESCVV 247
Query: 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 1142
FCN+ + + L S L LH + QR R + L RF +++ S+L+ATDVAARGLD
Sbjct: 248 FCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLD 307
Query: 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
I +E VI+Y + R E+++HR GRT RA ++GL L L+ +E
Sbjct: 308 IKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEE 350
|
Length = 460 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 1e-58
Identities = 81/233 (34%), Positives = 122/233 (52%), Gaps = 46/233 (19%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ ++R +Y GF+ PT IQ+ +P LL+ +D++G A+TGSGKT AF IPIL +
Sbjct: 4 LGLSPELLRGIYALGFEKPTPIQARAIP-PLLSGRDVIGQAQTGSGKTAAFLIPILEKLD 62
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
++ ALILAPTRELA+Q+
Sbjct: 63 PS-------------------------------------PKKDGPQALILAPTRELALQI 85
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
GK+T +KV + GG S +KQ+R L + PHI+VATPGRL + ++ G L+
Sbjct: 86 AEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLS--- 142
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
K+ YLV+DE DRM++ G +++ IL + RQT +FSAT+ +++
Sbjct: 143 KVKYLVLDEADRMLDMGFEDQIREILKLLPKD-----RQTLLFSATMPKEVRD 190
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 2e-55
Identities = 79/229 (34%), Positives = 118/229 (51%), Gaps = 46/229 (20%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ ++R +Y GF+ PT IQ+ +P LL+ +D++G A+TGSGKT AF IPIL +
Sbjct: 4 LGLSPELLRGIYALGFEKPTPIQARAIP-PLLSGRDVIGQAQTGSGKTAAFLIPILEKLD 62
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
++ ALILAPTRELA+Q+
Sbjct: 63 PS-------------------------------------PKKDGPQALILAPTRELALQI 85
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
GK+T +KV + GG S +KQ+R L + PHI+VATPGRL + ++ G L+
Sbjct: 86 AEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLS--- 142
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
K+ YLV+DE DRM++ G +++ IL + RQT++ S P+
Sbjct: 143 KVKYLVLDEADRMLDMGFEDQIREILKLLPKD-----RQTLLFSATMPK 186
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 199 bits (507), Expect = 3e-55
Identities = 123/424 (29%), Positives = 200/424 (47%), Gaps = 81/424 (19%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E+++ AL KG+ PT IQ+ +P AL R D++G+A TG+GKT AF +P L ++
Sbjct: 6 LELDESLLEALQDKGYTRPTAIQAEAIPPALDGR-DVLGSAPTGTGKTAAFLLPALQHLL 64
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+F ++ LIL PTRELA+QV
Sbjct: 65 -----------------------------------DFPRRKSGPPRILILTPTRELAMQV 89
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ + K+T + +A + GG++ + ++ I+VATPGRL ++I+ +F
Sbjct: 90 ADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRA-- 147
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+ L++DE DRM++ G +++ I ET +QT +FSATL
Sbjct: 148 -VETLILDEADRMLDMGFAQDIETI-----AAETRWRKQTLLFSATL------------- 188
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT----EKIGITKTLTESKILCKHDEKDSY 1068
+GD + LLN P V+ E+ K + + E +
Sbjct: 189 --------EGDAVQDFAERLLN--DPVEVEAEPSRRER----KKIHQWYYRADDLEHKTA 234
Query: 1069 LYYFILQHP--GRTLVFCNSISSVKRLTQLLTM--LKCSPLPLHASMNQRQRLKNLDRFR 1124
L +L+ P R++VF + V L L + C L M Q +R + + R
Sbjct: 235 LLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYL--EGEMVQAKRNEAIKRLT 292
Query: 1125 DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
D ++L+ATDVAARG+DI + HVI++ +PR+++ Y+HR GRT RA +G + L+E+
Sbjct: 293 DGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAH 352
Query: 1185 EIPL 1188
+ L
Sbjct: 353 DHLL 356
|
Length = 434 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (504), Expect = 1e-54
Identities = 145/502 (28%), Positives = 224/502 (44%), Gaps = 70/502 (13%)
Query: 690 KKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSAN 749
KK K + +A P ++ P + + +K KK
Sbjct: 6 KKIFGKGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRER 65
Query: 750 KELLEVDTSNNEDMFVQMAE----WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 805
K ED V+ E + FN+ ++ A++ GF T IQ+ V+ LA
Sbjct: 66 KPK-PASLWKLEDFVVEPQEGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVL-GYTLA 123
Query: 806 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865
D +G A+TG+GKT AF I I+ + L+ P ++
Sbjct: 124 GHDAIGRAQTGTGKTAAFLISIINQL---LQTPPPKE----------------------- 157
Query: 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN- 924
+ + ALI+APTREL +Q+ KYT + V VGGM +KQL+ L
Sbjct: 158 ------RYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEA 211
Query: 925 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT 984
+ ILVATPGRL +F Q G HL + +V+DE DRM++ G P+++ I + T
Sbjct: 212 RFCDILVATPGRLLDFNQRGEVHLDM---VEVMVLDEADRMLDMGFIPQVRQI---IRQT 265
Query: 985 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 1044
+ RQT +FSAT T + +NL K Q + P IV++
Sbjct: 266 PRKEERQTLLFSATFTDDV---MNLAK------------------QWTTD---PAIVEIE 301
Query: 1045 EKIGITKTLTESKILCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCS 1103
+ + T+ + +K LY + Q+P R +VF N V+R+ + L +
Sbjct: 302 PENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGIN 361
Query: 1104 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163
L + Q +R+K L+ FR+ +L+ATDVA RG+ I GI HVI++ +P + Y+H
Sbjct: 362 AAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVH 421
Query: 1164 RSGRTARANNEGLTLVLIESDE 1185
R GRT RA G+++ D+
Sbjct: 422 RIGRTGRAGASGVSISFAGEDD 443
|
Length = 475 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 3e-50
Identities = 126/426 (29%), Positives = 200/426 (46%), Gaps = 81/426 (19%)
Query: 771 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 827
V F P+ I+++L GF PT IQ P AL R D++G AETGSGKTLAF +P
Sbjct: 130 VSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGR-DMIGIAETGSGKTLAFLLPA 188
Query: 828 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887
+ I N ++ + L+LAPTRE
Sbjct: 189 IVHI---------------------------------NAQPLLRYGDGPI-VLVLAPTRE 214
Query: 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
LA Q++ G + ++ GG+ Q+ L + IL+A PGRL +F++
Sbjct: 215 LAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN--- 271
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP-RQTFVFSATLTHSLKNS 1006
+T L ++ YLV+DE DRM++ G P+++ I+ ++ +P RQT ++SAT
Sbjct: 272 VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI------RPDRQTLMWSATWP------ 319
Query: 1007 LNLKKGQSKSKKVSKGDP------SIKRLQDLLNIKSP-KIVDLTEKIGITKTLTESKIL 1059
K+ QS ++ + K +P S+ L NIK +V+ EK G K L +
Sbjct: 320 ---KEVQSLARDLCKEEPVHVNVGSLD-LTACHNIKQEVFVVEEHEKRGKLKMLLQR--- 372
Query: 1060 CKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 1119
I++ + L+F + LT+ L + L +H Q +R
Sbjct: 373 -------------IMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWV 419
Query: 1120 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV 1179
L+ F+ + I++ATDVA+RGLD+ +++VI++ P E Y+HR GRT RA +G +
Sbjct: 420 LNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYT 479
Query: 1180 LIESDE 1185
+ D+
Sbjct: 480 FLTPDK 485
|
Length = 545 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 2e-46
Identities = 86/297 (28%), Positives = 132/297 (44%), Gaps = 52/297 (17%)
Query: 121 KKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSM 180
++ K V S E+ E+ + +++AL GF+ PT IQ
Sbjct: 1 LAREDYDRFVKLKSAHNVALSRGEEKT--PPEFASLGLSPELLQALKDLGFEEPTPIQLA 58
Query: 181 VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 240
+P +LA +D++G A+TG+GKT AF +P+L I+
Sbjct: 59 AIP-LILAGRDVLGQAQTGTGKTAAFLLPLLQKIL------------------------- 92
Query: 241 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMST 299
R + ALILAPTRELA+Q+ + GK ++VA V GG+S
Sbjct: 93 ------------KSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSI 140
Query: 300 EKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKN 359
KQ+ L + I+VATPGRL + I+ G L + LV+DE DRM++ G +++
Sbjct: 141 RKQIEALKRGVDIVVATPGRLLDLIKRGKLD---LSGVETLVLDEADRMLDMGFIDDIEK 197
Query: 360 ILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 416
IL + RQT++ S P+ L R + + P + V L +LK
Sbjct: 198 ILKALPP-----DRQTLLFSATMPDDIRELARRYLND---PVEIEVSVEKLERTLKK 246
|
Length = 513 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 7e-45
Identities = 124/441 (28%), Positives = 205/441 (46%), Gaps = 78/441 (17%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 838
I+RA+ ++G++ PT IQ +P A+L +D++ +A+TG+GKT F +P+L ++ + +
Sbjct: 12 ILRAVAEQGYREPTPIQQQAIP-AVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHA 70
Query: 839 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 898
K R + ALIL PTRELA Q+ ++ D
Sbjct: 71 ---------------------------------KGRRPVRALILTPTRELAAQIGENVRD 97
Query: 899 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 958
KY ++ V GG+S Q+ L +LVATPGRL + L H + +L ++ LV
Sbjct: 98 YSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRL---LDLEHQNAVKLDQVEILV 154
Query: 959 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 1018
+DE DRM++ G +++ +L ++ RQ +FSAT +
Sbjct: 155 LDEADRMLDMGFIHDIRRVLAKL-----PAKRQNLLFSATFSD----------------- 192
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
IK L + L + +P +++ + ++ +T+ K L I G
Sbjct: 193 ------DIKALAEKL-LHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI----G 241
Query: 1079 R-----TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133
+ LVF + L + L +H + +Q R + L F+ + +L+A
Sbjct: 242 KGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVA 301
Query: 1134 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193
TD+AARGLDI + HV++Y +P E Y+HR GRT RA G L L+ DE L +
Sbjct: 302 TDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIE 361
Query: 1194 NSLEK---KVDLPDFPIDESV 1211
L+K ++ +P + D S+
Sbjct: 362 KLLKKEIPRIAIPGYEPDPSI 382
|
Length = 456 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 2e-44
Identities = 127/406 (31%), Positives = 197/406 (48%), Gaps = 67/406 (16%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F++ ++ L GF T IQ++ +P AL D+ G A+TG+GKTLAF L ++
Sbjct: 14 FDLHPALLAGLESAGFTRCTPIQALTLPVALPGG-DVAGQAQTGTGKTLAF----LVAVM 68
Query: 833 NKLEN-PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 891
N+L + P D E+ ALILAPTRELAIQ
Sbjct: 69 NRLLSRPALADRK----PEDPR-------------------------ALILAPTRELAIQ 99
Query: 892 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951
+ + G ++ A V GG+ +KQ +L + +++ATPGRL ++++ + L
Sbjct: 100 IHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVK--QHKVVSL 157
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 1011
+ V+DE DRM + G +++ +L R+ T RQT +FSATL+H +
Sbjct: 158 HACEICVLDEADRMFDLGFIKDIRFLLRRMPERGT---RQTLLFSATLSHRV-------- 206
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071
++ + +N + K+V TE IT +I DE+ L
Sbjct: 207 --------------LELAYEHMN-EPEKLVVETET--ITAARVRQRIYFPADEEKQTLLL 249
Query: 1072 FILQHP--GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS 1129
+L RT+VF N+ + V+R+ + L L + Q++R L+RF+
Sbjct: 250 GLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE 309
Query: 1130 ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
IL+ATDVAARGL I G+++V +Y +P +E Y+HR GRTAR EG
Sbjct: 310 ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEG 355
|
Length = 572 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (426), Expect = 3e-43
Identities = 119/408 (29%), Positives = 198/408 (48%), Gaps = 72/408 (17%)
Query: 779 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 838
I+ AL G++ P+ IQ+ +P LL +D++G A+TGSGKT AF +P+L + +L+ P
Sbjct: 17 ILEALNDLGYEKPSPIQAECIPH-LLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAP 75
Query: 839 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 898
L+LAPTRELA+QV + D
Sbjct: 76 Q---------------------------------------ILVLAPTRELAVQVAEAMTD 96
Query: 899 AGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYL 957
K+ V V + GG + QLR L + P I+V TPGRL + ++ G L++L + L
Sbjct: 97 FSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKL---SGL 153
Query: 958 VIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSK 1017
V+DE D M+ G +++ I M + + QT +FSAT+ +++ ++
Sbjct: 154 VLDEADEMLRMGFIEDVETI-----MAQIPEGHQTALFSATMPEAIRRI---------TR 199
Query: 1018 KVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP 1077
+ K +P R+Q + + D+++ + +++ L + E + +
Sbjct: 200 RFMK-EPQEVRIQSSVTTRP----DISQSYWTVWGMRKNEALVRFLEAEDF--------- 245
Query: 1078 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 1137
++F + ++ + + L + L+ MNQ R + L+R +D IL+ATDVA
Sbjct: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305
Query: 1138 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185
ARGLD+ I V++Y +P SE Y+HR GRT RA G L+ +E+ E
Sbjct: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353
|
Length = 629 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 7e-40
Identities = 70/215 (32%), Positives = 103/215 (47%), Gaps = 48/215 (22%)
Query: 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 851
T IQ+ +P A+L+ KD++ A TGSGKTLAF +PIL
Sbjct: 1 TPIQAQAIP-AILSGKDVLVQAPTGSGKTLAFLLPIL----------------------- 36
Query: 852 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVV 911
+ + + AL+LAPTRELA Q+ + K ++VA +
Sbjct: 37 ----------------QALLPKKGGPQALVLAPTRELAEQIYEELKKLFKILGLRVALLT 80
Query: 912 GGMSTEKQLRILNK-CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGH 970
GG S ++Q R L K ILV TPGRL + ++ G L L + LV+DE R+++ G
Sbjct: 81 GGTSLKEQARKLKKGKADILVGTPGRLLDLLRRGKLKL--LKNLKLLVLDEAHRLLDMGF 138
Query: 971 FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
+L+ IL R+ RQ + SATL +L++
Sbjct: 139 GDDLEEILSRL-----PPDRQILLLSATLPRNLED 168
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 4e-36
Identities = 70/243 (28%), Positives = 103/243 (42%), Gaps = 76/243 (31%)
Query: 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 234
T IQ+ +P A+L+ KD++ A TGSGKTLAF +PIL
Sbjct: 1 TPIQAQAIP-AILSGKDVLVQAPTGSGKTLAFLLPIL----------------------- 36
Query: 235 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVV 294
+ + + AL+LAPTRELA Q+ + K ++VA +
Sbjct: 37 ----------------QALLPKKGGPQALVLAPTRELAEQIYEELKKLFKILGLRVALLT 80
Query: 295 GGMSTEKQLRILNK-CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGH 353
GG S ++Q R L K ILV TPGRL + ++ G L L + LV+DE R+++ G
Sbjct: 81 GGTSLKEQARKLKKGKADILVGTPGRLLDLLRRGKLKL--LKNLKLLVLDEAHRLLDMGF 138
Query: 354 FPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 413
+L+ IL R+ RQ + SATL +
Sbjct: 139 GDDLEEILSRL---------------------------------PPDRQILLLSATLPRN 165
Query: 414 LKN 416
L++
Sbjct: 166 LED 168
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 8e-35
Identities = 60/227 (26%), Positives = 96/227 (42%), Gaps = 18/227 (7%)
Query: 528 KHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
+EK L + + GR +VF + V+ L + L LH + Q +R +
Sbjct: 256 SEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRA 315
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646
L++F+D +L+ATDVAARGLDIP + HVI+Y +P E Y+HR GRT RA +G+ +
Sbjct: 316 LEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAIS 375
Query: 647 LIESDE---------------IPLKTKFNLQEEENNEEEERAEADKEKTEDINVTVSSKK 691
+ +E +P L E E+ + + E+ DI+ + K
Sbjct: 376 FVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEPEDAKLLKTTRPGLEEESDISDEIKKLK 435
Query: 692 KKLKR--KQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLK 736
K + + +S+L AN I +
Sbjct: 436 SSKKALLRGLGVRFTLSKLLANLGKEIPGAGDAVTIDPELERRSPNS 482
|
Length = 513 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 1e-34
Identities = 117/450 (26%), Positives = 196/450 (43%), Gaps = 78/450 (17%)
Query: 738 KKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSM 797
++K Q+ A+ +E +N D V + +K N E ++R +Y GF+ P+ IQ
Sbjct: 4 SEQKNQSEQVASTGTIE----SNYDEIVDSFDALKLN--EDLLRGIYSYGFEKPSAIQQR 57
Query: 798 -VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 856
+ P +L D +G A++G+GKT F I L I L
Sbjct: 58 GIKP--ILDGYDTIGQAQSGTGKTATFVIAALQLIDYDL--------------------- 94
Query: 857 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMST 916
N ALILAPTRELA Q+Q +L G Y V+ VGG
Sbjct: 95 ------------------NACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVV 136
Query: 917 EKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKN 976
+ L H++V TPGR+++ I H + + ++DE D M+ G ++ +
Sbjct: 137 RDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVD---DLKLFILDEADEMLSRGFKGQIYD 193
Query: 977 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 1036
+ ++ Q +FSAT+ + + L L + K + I +D L ++
Sbjct: 194 VFKKLP-----PDVQVALFSATMPNEI---LEL------TTKFMRDPKRILVKKDELTLE 239
Query: 1037 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQL 1096
+ + + K + LC D Y I Q +++CN+ V LT+
Sbjct: 240 GIRQF----YVAVEKEEWKFDTLC-----DLYETLTITQ----AIIYCNTRRKVDYLTKK 286
Query: 1097 LTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156
+ + +H M+Q+ R + FR + +L+ TD+ ARG+D+ + VI+Y +P
Sbjct: 287 MHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPA 346
Query: 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+ E YIHR GR+ R +G+ + + D+I
Sbjct: 347 SPENYIHRIGRSGRFGRKGVAINFVTPDDI 376
|
Length = 401 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 6e-34
Identities = 58/228 (25%), Positives = 93/228 (40%), Gaps = 49/228 (21%)
Query: 783 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 842
+ + GF+ Q + + L +D++ AA TGSGKTLA +P L
Sbjct: 1 IEKFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALE------------- 47
Query: 843 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY 902
K L+L PTRELA Q + G
Sbjct: 48 ---------------------------ALKRGKGGRVLVLVPTRELAEQWAEELKKLGPS 80
Query: 903 TPVKVACVVGGMSTEKQLR-ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 961
+KV + GG S +QLR + + ILV TPGRL + ++ L ++ +++DE
Sbjct: 81 LGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDKL---SLSNVDLVILDE 137
Query: 962 TDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
R+++ G +L+ +L + + Q + SAT ++N L L
Sbjct: 138 AHRLLDGGFGDQLEKLLKLL-----PKNVQLLLLSATPPEEIENLLEL 180
|
Length = 201 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 1e-33
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 530 DEKDSYLYYFILQH---PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
DEK L + +H G+ L+FC S + L +LL LH +Q +R +
Sbjct: 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEV 70
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646
L FR+ +L+ATDV ARG+D+P + VI+Y +P + Y+ R GR RA +G ++
Sbjct: 71 LKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAIL 130
Query: 647 L 647
L
Sbjct: 131 L 131
|
Length = 131 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-33
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 1063 DEKDSYLYYFILQH---PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 1119
DEK L + +H G+ L+FC S + L +LL LH +Q +R +
Sbjct: 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEV 70
Query: 1120 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV 1179
L FR+ +L+ATDV ARG+D+P + VI+Y +P + Y+ R GR RA +G ++
Sbjct: 71 LKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAIL 130
Query: 1180 L 1180
L
Sbjct: 131 L 131
|
Length = 131 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 2e-33
Identities = 117/428 (27%), Positives = 198/428 (46%), Gaps = 86/428 (20%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
+P ++ L G++ PT IQ +P+AL + + ++ +A+TGSGKT +F +PI++
Sbjct: 127 GLPPKLLLNLETAGYEFPTPIQMQAIPAAL-SGRSLLVSADTGSGKTASFLVPIISRCCT 185
Query: 834 -KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ +P+E+ RN L A++L PTREL +QV
Sbjct: 186 IRSGHPSEQ--------------------------------RNPL-AMVLTPTRELCVQV 212
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
++ GK P K A VVGG + +QL + + ++V TPGRL I L H EL
Sbjct: 213 EDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRL---IDLLSKHDIELD 269
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
++ LV+DE D M+E G ++ I + SQP Q +FSAT++ ++ K
Sbjct: 270 NVSVLVLDEVDCMLERGFRDQVMQIFQAL-----SQP-QVLLFSATVSPEVE-----KFA 318
Query: 1013 QSKSKK---VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
S +K +S G+P+ P K + + I + +K L
Sbjct: 319 SSLAKDIILISIGNPN-----------RP-----------NKAVKQLAIWVETKQKKQKL 356
Query: 1070 YYFIL--QH---PGRTLVFCNSISSVKRLTQLLTM---LKCSPLPLHASMNQRQRLKNLD 1121
+ + QH P +VF +S L +T+ LK L +H + ++R + +
Sbjct: 357 FDILKSKQHFKPPA--VVFVSSRLGADLLANAITVVTGLKA--LSIHGEKSMKERREVMK 412
Query: 1122 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
F +++AT V RG+D+ + VI + +P T + YIH+ GR +R +G +V +
Sbjct: 413 SFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFV 472
Query: 1182 ESDEIPLY 1189
++ L+
Sbjct: 473 NEEDRNLF 480
|
Length = 518 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 3e-30
Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 44/200 (22%)
Query: 166 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 225
+ + GF+ Q + + L +D++ AA TGSGKTLA +P L
Sbjct: 1 IEKFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALE------------- 47
Query: 226 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY 285
K L+L PTRELA Q + G
Sbjct: 48 ---------------------------ALKRGKGGRVLVLVPTRELAEQWAEELKKLGPS 80
Query: 286 TPVKVACVVGGMSTEKQLR-ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 344
+KV + GG S +QLR + + ILV TPGRL + ++ L ++ +++DE
Sbjct: 81 LGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDKL---SLSNVDLVILDE 137
Query: 345 TDRMIESGHFPELKNILDRV 364
R+++ G +L+ +L +
Sbjct: 138 AHRLLDGGFGDQLEKLLKLL 157
|
Length = 201 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 7e-30
Identities = 73/229 (31%), Positives = 113/229 (49%), Gaps = 39/229 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F + ++ AL +KGF T IQ++ +P LA +D+ G A+TG+GKT+AF LT
Sbjct: 13 FALHPQVVEALEKKGFHNCTPIQALALP-LTLAGRDVAGQAQTGTGKTMAF----LTATF 67
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ L L A E + N+ ALI+APTRELA+Q+
Sbjct: 68 HYL------------LSHPAPE----------------DRKVNQPRALIMAPTRELAVQI 99
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ T +K+ GG +KQL++L IL+ T GRL ++ + H +L
Sbjct: 100 HADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGA-- 157
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001
I +V+DE DRM + G +++ + R M +Q R +FSATL++
Sbjct: 158 -IQVVVLDEADRMFDLGFIKDIRWLFRR--MPPANQ-RLNMLFSATLSY 202
|
Length = 423 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 1e-29
Identities = 90/317 (28%), Positives = 138/317 (43%), Gaps = 45/317 (14%)
Query: 73 KKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSAN 132
KK K + +A P ++ P++ + +K KK
Sbjct: 6 KKIFGKGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRER 65
Query: 133 KELLEVDTSNNEDMFVQMAE----WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA 188
K ED V+ E + FN+ ++ A++ GF T IQ+ V+ LA
Sbjct: 66 KPK-PASLWKLEDFVVEPQEGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVL-GYTLA 123
Query: 189 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248
D +G A+TG+GKT AF I I+ + L+ P ++
Sbjct: 124 GHDAIGRAQTGTGKTAAFLISIINQL---LQTPPPKE----------------------- 157
Query: 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN- 307
+ + ALI+APTREL +Q+ KYT + V VGGM +KQL+ L
Sbjct: 158 ------RYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEA 211
Query: 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT 367
+ ILVATPGRL +F Q G HL + +V+DE DRM++ G P+++ I + T
Sbjct: 212 RFCDILVATPGRLLDFNQRGEVHLDM---VEVMVLDEADRMLDMGFIPQVRQI---IRQT 265
Query: 368 ETSQPRQTMIESGHFPE 384
+ RQT++ S F +
Sbjct: 266 PRKEERQTLLFSATFTD 282
|
Length = 475 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 1e-28
Identities = 86/285 (30%), Positives = 134/285 (47%), Gaps = 57/285 (20%)
Query: 154 VKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 210
V F P+ I+++L GF PT IQ P AL R D++G AETGSGKTLAF +P
Sbjct: 130 VSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGR-DMIGIAETGSGKTLAFLLPA 188
Query: 211 LTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270
+ I N ++ + L+LAPTRE
Sbjct: 189 IVHI---------------------------------NAQPLLRYGDGPI-VLVLAPTRE 214
Query: 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
LA Q++ G + ++ GG+ Q+ L + IL+A PGRL +F++
Sbjct: 215 LAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN--- 271
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP-RQTMIESGHFPELKNIL 389
+T L ++ YLV+DE DRM++ G P+++ I+ ++ +P RQT++ S +P+ L
Sbjct: 272 VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI------RPDRQTLMWSATWPKEVQSL 325
Query: 390 DRVTMTETSQPRQTFVFSATLT--HSLKNSLNL-----KKGQSKS 427
R E +P V S LT H++K + + K+G+ K
Sbjct: 326 ARDLCKE--EPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKM 368
|
Length = 545 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-28
Identities = 69/216 (31%), Positives = 102/216 (47%), Gaps = 49/216 (22%)
Query: 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229
G+ T IQ+ +P A+LA KD++ A+TGSGKT AFG+ +L KL
Sbjct: 23 GYTEMTPIQAQSLP-AILAGKDVIAQAKTGSGKTAAFGLGLL----QKL----------- 66
Query: 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-V 288
+ F ++ AL+L PTRELA QV I ++ P +
Sbjct: 67 ------------------DVKRF------RVQALVLCPTRELADQVAKEIRRLARFIPNI 102
Query: 289 KVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRM 348
KV + GG+ Q+ L HI+V TPGR+ + ++ G L L N LV+DE DRM
Sbjct: 103 KVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDAL---NTLVLDEADRM 159
Query: 349 IESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
++ G + I+ + RQT++ S +PE
Sbjct: 160 LDMGFQDAIDAIIRQ-----APARRQTLLFSATYPE 190
|
Length = 460 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (297), Expect = 1e-27
Identities = 48/115 (41%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 540 ILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 597
+L H P +VFCN+ + + L S L LH + QR R + L RF +++ S+
Sbjct: 236 LLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSV 295
Query: 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
L+ATDVAARGLDI +E VI+Y + R E+++HR GRT RA ++GL + L+ +E
Sbjct: 296 LVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEE 350
|
Length = 460 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 4e-27
Identities = 65/224 (29%), Positives = 110/224 (49%), Gaps = 44/224 (19%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ E+++ AL KG+ PT IQ+ +P AL R D++G+A TG+GKT AF +P L ++
Sbjct: 6 LELDESLLEALQDKGYTRPTAIQAEAIPPALDGR-DVLGSAPTGTGKTAAFLLPALQHLL 64
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+F ++ LIL PTRELA+QV
Sbjct: 65 -----------------------------------DFPRRKSGPPRILILTPTRELAMQV 89
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ + K+T + +A + GG++ + ++ I+VATPGRL ++I+ +F
Sbjct: 90 ADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRA-- 147
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
+ L++DE DRM++ G +++ I ET +QT++ S
Sbjct: 148 -VETLILDEADRMLDMGFAQDIETI-----AAETRWRKQTLLFS 185
|
Length = 434 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 5e-27
Identities = 70/224 (31%), Positives = 108/224 (48%), Gaps = 39/224 (17%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F + ++ AL +KGF T IQ++ +P LA +D+ G A+TG+GKT+AF LT
Sbjct: 13 FALHPQVVEALEKKGFHNCTPIQALALP-LTLAGRDVAGQAQTGTGKTMAF----LTATF 67
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+ L L A E + N+ ALI+APTRELA+Q+
Sbjct: 68 HYL------------LSHPAPE----------------DRKVNQPRALIMAPTRELAVQI 99
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ T +K+ GG +KQL++L IL+ T GRL ++ + H +L
Sbjct: 100 HADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGA-- 157
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIES 379
I +V+DE DRM + G +++ + R M +Q R M+ S
Sbjct: 158 -IQVVVLDEADRMFDLGFIKDIRWLFRR--MPPANQ-RLNMLFS 197
|
Length = 423 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-26
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 562 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 621
+LL LH ++Q +R + L+ FR+ + +L+ATDVA RG+D+P + VI+Y +
Sbjct: 1 KLLRKPGIKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVINYDL 60
Query: 622 PRTSEIYIHRSGRTARAN 639
P YI R GR RA
Sbjct: 61 PWNPASYIQRIGRAGRAG 78
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-26
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 1095 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 1154
+LL LH ++Q +R + L+ FR+ + +L+ATDVA RG+D+P + VI+Y +
Sbjct: 1 KLLRKPGIKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVINYDL 60
Query: 1155 PRTSEIYIHRSGRTARAN 1172
P YI R GR RA
Sbjct: 61 PWNPASYIQRIGRAGRAG 78
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-26
Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 49/193 (25%)
Query: 807 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866
+D++ AA TGSGKTLA +PIL
Sbjct: 1 RDVLLAAPTGSGKTLAALLPILE------------------------------------- 23
Query: 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926
+ + L+LAPTRELA QV + + +KV ++GG S ++Q ++L+
Sbjct: 24 ---LLDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGK 79
Query: 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTET 986
I+V TPGRL + L K++ L++DE R++ G IL +
Sbjct: 80 TDIVVGTPGRL---LDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLK-----L 131
Query: 987 SQPRQTFVFSATL 999
+ RQ + SAT
Sbjct: 132 PKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-25
Identities = 34/82 (41%), Positives = 49/82 (59%)
Query: 558 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI 617
+ L +LL L LH ++Q +R + LD+F + +L+ATDVA RGLD+PG++ VI
Sbjct: 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVI 60
Query: 618 HYHVPRTSEIYIHRSGRTARAN 639
Y +P + YI R GR RA
Sbjct: 61 IYDLPWSPASYIQRIGRAGRAG 82
|
Length = 82 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-25
Identities = 34/82 (41%), Positives = 49/82 (59%)
Query: 1091 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI 1150
+ L +LL L LH ++Q +R + LD+F + +L+ATDVA RGLD+PG++ VI
Sbjct: 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVI 60
Query: 1151 HYHVPRTSEIYIHRSGRTARAN 1172
Y +P + YI R GR RA
Sbjct: 61 IYDLPWSPASYIQRIGRAGRAG 82
|
Length = 82 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 6e-25
Identities = 68/228 (29%), Positives = 116/228 (50%), Gaps = 43/228 (18%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 221
I+RA+ ++G++ PT IQ +P A+L +D++ +A+TG+GKT F +P+L ++ + +
Sbjct: 12 ILRAVAEQGYREPTPIQQQAIP-AVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHA 70
Query: 222 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 281
K R + ALIL PTRELA Q+ ++ D
Sbjct: 71 ---------------------------------KGRRPVRALILTPTRELAAQIGENVRD 97
Query: 282 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 341
KY ++ V GG+S Q+ L +LVATPGRL + L H + +L ++ LV
Sbjct: 98 YSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRL---LDLEHQNAVKLDQVEILV 154
Query: 342 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP-ELKNI 388
+DE DRM++ G +++ +L ++ RQ ++ S F ++K +
Sbjct: 155 LDEADRMLDMGFIHDIRRVLAKL-----PAKRQNLLFSATFSDDIKAL 197
|
Length = 456 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 4e-24
Identities = 75/241 (31%), Positives = 114/241 (47%), Gaps = 49/241 (20%)
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 221
I+ AL G++ P+ IQ+ +P LL +D++G A+TGSGKT AF +P+L + +L+ P
Sbjct: 17 ILEALNDLGYEKPSPIQAECIPH-LLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAP 75
Query: 222 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 281
L+LAPTRELA+QV + D
Sbjct: 76 Q---------------------------------------ILVLAPTRELAVQVAEAMTD 96
Query: 282 AGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYL 340
K+ V V + GG + QLR L + P I+V TPGRL + ++ G L++L + L
Sbjct: 97 FSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKL---SGL 153
Query: 341 VIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQP 400
V+DE D M+ G +++ I M + + QT + S PE + R M E +
Sbjct: 154 VLDEADEMLRMGFIEDVETI-----MAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEV 208
Query: 401 R 401
R
Sbjct: 209 R 209
|
Length = 629 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 1e-23
Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 44/172 (25%)
Query: 190 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249
+D++ AA TGSGKTLA +PIL
Sbjct: 1 RDVLLAAPTGSGKTLAALLPILE------------------------------------- 23
Query: 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309
+ + L+LAPTRELA QV + + +KV ++GG S ++Q ++L+
Sbjct: 24 ---LLDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGK 79
Query: 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL 361
I+V TPGRL + L K++ L++DE R++ G IL
Sbjct: 80 TDIVVGTPGRL---LDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKIL 128
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 4e-23
Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 15/174 (8%)
Query: 540 ILQHP--GRTLVFCNSISSVKRLTQLLTM--LKCSPLPLHASMNQRQRLKNLDRFRDQNN 595
+L+ P R++VF + V L L + C L M Q +R + + R D
Sbjct: 239 LLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYL--EGEMVQAKRNEAIKRLTDGRV 296
Query: 596 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
++L+ATDVAARG+DI + HVI++ +PR+++ Y+HR GRT RA +G + L+E+ + L
Sbjct: 297 NVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLL 356
Query: 656 --KTKFNLQEE------ENNEEEERAEADKE-KTEDINVTVSSKKKKLKRKQNP 700
K + ++E + + +A ++K+ V +KK K K+ P
Sbjct: 357 LGKIERYIEEPLKARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKP 410
|
Length = 434 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-23
Identities = 77/258 (29%), Positives = 118/258 (45%), Gaps = 68/258 (26%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F++ ++ L GF T IQ++ +P AL D+ G A+TG+GKTLAF L ++
Sbjct: 14 FDLHPALLAGLESAGFTRCTPIQALTLPVALPGG-DVAGQAQTGTGKTLAF----LVAVM 68
Query: 216 NKLEN-PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 274
N+L + P D E+ ALILAPTRELAIQ
Sbjct: 69 NRLLSRPALADRK----PEDPR-------------------------ALILAPTRELAIQ 99
Query: 275 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 334
+ + G ++ A V GG+ +KQ +L + +++ATPGRL ++++ + L
Sbjct: 100 IHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVK--QHKVVSL 157
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394
+ V+DE DRM + G +++ +L R+ PE R T
Sbjct: 158 HACEICVLDEADRMFDLGFIKDIRFLLRRM------------------PE------RGT- 192
Query: 395 TETSQPRQTFVFSATLTH 412
RQT +FSATL+H
Sbjct: 193 ------RQTLLFSATLSH 204
|
Length = 572 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 8e-22
Identities = 64/197 (32%), Positives = 100/197 (50%), Gaps = 38/197 (19%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
+P ++ L G++ PT IQ +P+AL + + ++ +A+TGSGKT +F +PI++
Sbjct: 127 GLPPKLLLNLETAGYEFPTPIQMQAIPAAL-SGRSLLVSADTGSGKTASFLVPIISRCCT 185
Query: 217 -KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+ +P+E+ RN L A++L PTREL +QV
Sbjct: 186 IRSGHPSEQ--------------------------------RNPL-AMVLTPTRELCVQV 212
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
++ GK P K A VVGG + +QL + + ++V TPGRL I L H EL
Sbjct: 213 EDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRL---IDLLSKHDIELD 269
Query: 336 KINYLVIDETDRMIESG 352
++ LV+DE D M+E G
Sbjct: 270 NVSVLVLDEVDCMLERG 286
|
Length = 518 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 5e-20
Identities = 39/77 (50%), Positives = 52/77 (67%), Gaps = 5/77 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
ALILAPTRELA+Q+ GK+T +KV + GG S +KQ+R L + PHI+VATPG L
Sbjct: 72 ALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLL 131
Query: 1415 -SLKR--IDLAKSIEYL 1428
L+R +DL ++YL
Sbjct: 132 DLLERGKLDL-SKVKYL 147
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 2e-17
Identities = 66/233 (28%), Positives = 99/233 (42%), Gaps = 51/233 (21%)
Query: 121 KKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSM 180
++K Q+ A+ +E +N D V + +K N E ++R +Y GF+ P+ IQ
Sbjct: 4 SEQKNQSEQVASTGTIE----SNYDEIVDSFDALKLN--EDLLRGIYSYGFEKPSAIQQR 57
Query: 181 -VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 239
+ P +L D +G A++G+GKT F I L I L
Sbjct: 58 GIKP--ILDGYDTIGQAQSGTGKTATFVIAALQLIDYDL--------------------- 94
Query: 240 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMST 299
N ALILAPTRELA Q+Q +L G Y V+ VGG
Sbjct: 95 ------------------NACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVV 136
Query: 300 EKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESG 352
+ L H++V TPGR+++ I H + + ++DE D M+ G
Sbjct: 137 RDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVD---DLKLFILDEADEMLSRG 186
|
Length = 401 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 3e-17
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Query: 531 EKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDR 589
+K LY + Q+P R +VF N V+R+ + L + L + Q +R+K L+
Sbjct: 321 DKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEG 380
Query: 590 FRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIE 649
FR+ +L+ATDVA RG+ I GI HVI++ +P + Y+HR GRT RA G+++
Sbjct: 381 FREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAG 440
Query: 650 SDE 652
D+
Sbjct: 441 EDD 443
|
Length = 475 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 8e-17
Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 10/171 (5%)
Query: 485 LQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF---IL 541
+Q R LC+E +N+ S +DLT I + E ++ +H EK L I+
Sbjct: 322 VQSLARDLCKEEPVHVNVGS---LDLTACHNIKQ---EVFVVEEH-EKRGKLKMLLQRIM 374
Query: 542 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 601
+ + L+F + LT+ L + L +H Q +R L+ F+ + I++AT
Sbjct: 375 RDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIAT 434
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652
DVA+RGLD+ +++VI++ P E Y+HR GRT RA +G + + D+
Sbjct: 435 DVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDK 485
|
Length = 545 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 4e-15
Identities = 37/79 (46%), Positives = 51/79 (64%)
Query: 574 LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 633
L+ MNQ R + L+R +D IL+ATDVAARGLD+ I V++Y +P SE Y+HR G
Sbjct: 275 LNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIG 334
Query: 634 RTARANNEGLTVVLIESDE 652
RT RA G ++ +E+ E
Sbjct: 335 RTGRAGRAGRALLFVENRE 353
|
Length = 629 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 6e-15
Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALILAPTRELA+Q+ + GK ++VA V GG+S KQ+ L + I+VATPG
Sbjct: 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPG 159
|
Length = 513 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 1e-14
Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 530 DEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 588
+EK + L + + G RT+VF N+ + V+R+ + L L + Q++R L+
Sbjct: 242 EEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLN 301
Query: 589 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
RF+ IL+ATDVAARGL I G+++V +Y +P +E Y+HR GRTAR EG
Sbjct: 302 RFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEG 355
|
Length = 572 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-14
Identities = 32/66 (48%), Positives = 44/66 (66%)
Query: 580 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 639
Q++RL+ L+ F + IL+ATDVAARGL IP + HV +Y +P E Y+HR GRT RA
Sbjct: 291 QKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAG 350
Query: 640 NEGLTV 645
G ++
Sbjct: 351 ASGHSI 356
|
Length = 423 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-14
Identities = 32/63 (50%), Positives = 42/63 (66%)
Query: 1113 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172
Q++RL+ L+ F + IL+ATDVAARGL IP + HV +Y +P E Y+HR GRT RA
Sbjct: 291 QKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAG 350
Query: 1173 NEG 1175
G
Sbjct: 351 ASG 353
|
Length = 423 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 3e-14
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK-CPHILVATPGAL 1414
AL+LAPTRELA Q+ + K ++VA + GG S ++Q R L K ILV TPG L
Sbjct: 48 ALVLAPTRELAEQIYEELKKLFKILGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRL 107
Query: 1415 ----SLKRIDLAKSIEYL 1428
++ L K+++ L
Sbjct: 108 LDLLRRGKLKLLKNLKLL 125
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 3e-13
Identities = 39/108 (36%), Positives = 57/108 (52%)
Query: 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607
LVF + L + L +H + +Q R + L F+ + +L+ATD+AARG
Sbjct: 249 LVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARG 308
Query: 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655
LDI + HV++Y +P E Y+HR GRT RA G + L+ DE L
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356
|
Length = 456 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 7e-13
Identities = 37/124 (29%), Positives = 68/124 (54%), Gaps = 4/124 (3%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 605
+ +++CN+ V LT+ + + +H M+Q+ R + FR + +L+ TD+ A
Sbjct: 269 QAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLA 328
Query: 606 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP----LKTKFNL 661
RG+D+ + VI+Y +P + E YIHR GR+ R +G+ + + D+I ++ +N
Sbjct: 329 RGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNT 388
Query: 662 QEEE 665
Q EE
Sbjct: 389 QIEE 392
|
Length = 401 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 1e-11
Identities = 65/283 (22%), Positives = 118/283 (41%), Gaps = 55/283 (19%)
Query: 1011 KGQSKSKKVSKGDPSIKRL------QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 1064
G SK+ K DP ++ D+ + K K+ ++ + + L +
Sbjct: 317 SGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREI-----VKEQLGK--------N 363
Query: 1065 KDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPL--HAS------MNQRQR 1116
DS R +VF + +++ LL + AS M+Q+++
Sbjct: 364 PDS-----------RIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQ 412
Query: 1117 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH-VPRTSEI-YIHRSGRTARANNE 1174
++ LD+FR ++L++T VA GLDIP ++ VI Y VP SEI I R GRT R E
Sbjct: 413 IEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVP--SEIRSIQRKGRTGR-QEE 469
Query: 1175 GLTLVLIE---SDEIPLYI------KMFNSL---EKKVDLPDFPIDESVLSLIKKRIDLA 1222
G +VLI DE + KM L + ++ +DE +++ +
Sbjct: 470 GRVVVLIAKGTRDEAYYWSSRRKEKKMKEELKNLKGILNKKLQELDEEQKGEEEEKDEQL 529
Query: 1223 KSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEI 1265
++++SK K+ + + + ++++S E+
Sbjct: 530 SLDDFVKSKGKEEEEEEEKEEKDKETEEDEPEGPKIIVDSREL 572
|
Length = 773 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 2e-11
Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 33/200 (16%)
Query: 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPL--HAS------MNQRQRLKNLDRFRDQNNSI 597
R +VF + +++ LL + AS M+Q+++++ LD+FR ++
Sbjct: 367 RIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNV 426
Query: 598 LLATDVAARGLDIPGIEHVIHYH-VPRTSEI-YIHRSGRTARANNEGLTVVLIE---SDE 652
L++T VA GLDIP ++ VI Y VP SEI I R GRT R EG VVLI DE
Sbjct: 427 LVSTSVAEEGLDIPSVDLVIFYEPVP--SEIRSIQRKGRTGR-QEEGRVVVLIAKGTRDE 483
Query: 653 I-----------------PLKTKFNLQEEENNEEEERAEADKEKTEDINVTVSSKKKKLK 695
LK N + +E +EE++ E +K++ ++ V SK K+ +
Sbjct: 484 AYYWSSRRKEKKMKEELKNLKGILNKKLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEE 543
Query: 696 RKQNPSQVEVSELSANTNDP 715
++ + + P
Sbjct: 544 EEEEKEEKDKETEEDEPEGP 563
|
Length = 773 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 3e-11
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 1341 QLLIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR-I 1399
L E+ L+L PTRELA Q + G +KV + GG S +QLR +
Sbjct: 42 LLPALEALKRGKGGRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKL 101
Query: 1400 LNKCPHILVATPGAL 1414
+ ILV TPG L
Sbjct: 102 ESGKTDILVTTPGRL 116
|
Length = 201 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 6e-11
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
L+LAPTRELA QV + + +KV ++GG S ++Q ++L+ I+V TPG L
Sbjct: 33 VLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRL- 90
Query: 1416 LKRIDLAKSIEYLESKIK 1433
+D + ++ K+
Sbjct: 91 ---LDELERLKLSLKKLD 105
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 8e-11
Identities = 51/237 (21%), Positives = 109/237 (45%), Gaps = 12/237 (5%)
Query: 494 EEIQDLLNIKSP-KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT-LVFC 551
++I++LL + + + ++ + ++ + K +L ++ +H G++ +++
Sbjct: 178 QDIRELLRLADANEFITSFDRPNLRFSVVKKN------NKQKFLLDYLKKHRGQSGIIYA 231
Query: 552 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 611
+S V+ L + L S L HA ++ + R +N + F + +++AT+ G+D P
Sbjct: 232 SSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKP 291
Query: 612 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEE 671
+ VIHY +P E Y +GR R ++L +I L K +++ E +++ +
Sbjct: 292 NVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALL-KRRIEQSEADDDYK 350
Query: 672 RAEADKEKTEDINV--TVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQ 726
+ E +K I T + ++ + R ++VE N DP + T E Q
Sbjct: 351 QIEREK-LRAMIAYCETQTCRRAYILRYFGENEVEPCGNCDNCLDPPKSYDATVEAQ 406
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ [DNA metabolism, DNA replication, recombination, and repair]. Length = 591 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-10
Identities = 87/399 (21%), Positives = 167/399 (41%), Gaps = 63/399 (15%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
FNI + +R +++ F + T Q +P + + ++++ A TGSGKT A +P++ ++
Sbjct: 5 FNILDPRVREWFKRKFTSLTPPQRYAIP-EIHSGENVLIIAPTGSGKTEAAFLPVINELL 63
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ + E+ +YAL ++P + L +
Sbjct: 64 SLGKGKLED----------------------------------GIYALYISPLKALNNDI 89
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ + + + ++VA G ++ ++L PHIL+ TP L I L EL
Sbjct: 90 RRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESL--AILLNSPKFRELL 147
Query: 953 K-INYLVIDETDRMIES--GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
+ + Y+++DE + ES G +L L+R + E + Q SAT+ +
Sbjct: 148 RDVRYVIVDEIHALAESKRGV--QLALSLER--LRELAGDFQRIGLSATV-GPPEEVAKF 202
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 1069
G ++ + K+L+ + + SP DL + L E
Sbjct: 203 LVGFGDPCEIVD-VSAAKKLE--IKVISPV-EDLIYDEELWAALYE-------------R 245
Query: 1070 YYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH-ASMNQRQRLKNLDRFRDQNN 1128
+++ TL+F N+ S +RL L L + +H S+++ RL+ +R ++
Sbjct: 246 IAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGEL 305
Query: 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 1167
++AT G+DI I+ VI P++ ++ R GR
Sbjct: 306 KAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGR 344
|
Length = 814 |
| >gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-09
Identities = 54/276 (19%), Positives = 112/276 (40%), Gaps = 46/276 (16%)
Query: 905 VKVACVVGGMSTEKQLRILNKCPH----ILVATPGRLWEFIQLGHF--HLTELYKINYLV 958
V A + +S ++Q I + +L P RL + +F L + I +
Sbjct: 78 VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERL----EQDYFLNMLQRI-PIALVA 132
Query: 959 IDETDRMIESGH-F-PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016
+DE + + GH F PE + + ++ E +AT
Sbjct: 133 VDEAHCVSQWGHDFRPEYQRL---GSLAERFPQVPRIALTATAD---------------- 173
Query: 1017 KKVSKGDPSIKRLQDLLNIKSP-KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 1075
+ + +++LL + + + ++ + ++ + K +L ++ +
Sbjct: 174 ------AETRQDIRELLRLADANEFITSFDRPNLRFSVVKKN------NKQKFLLDYLKK 221
Query: 1076 HPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
H G++ +++ +S V+ L + L S L HA ++ + R +N + F + +++AT
Sbjct: 222 HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVAT 281
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
+ G+D P + VIHY +P E Y +GR R
Sbjct: 282 NAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGR 317
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ [DNA metabolism, DNA replication, recombination, and repair]. Length = 591 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 4e-09
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 20/149 (13%)
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI-YIHRSGRTA 636
M+Q+++ + +D+FR ++L+AT V GLDIP ++ VI Y P SEI I R GRT
Sbjct: 409 MSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYE-PVPSEIRSIQRKGRTG 467
Query: 637 RANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKR 696
R G VVL+ E +E + + K + + ++ +LK
Sbjct: 468 RKRK-GRVVVLV---------------TEGTRDEAYYYSSRRKEQKMIESIRGLSLELKV 511
Query: 697 KQNPSQVEVSELSA--NTNDPDDQVNKTE 723
+ + + + +V E
Sbjct: 512 RLPEKEEPSGDGQKIPEDAETLLEVVGEE 540
|
Length = 542 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 6e-09
Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-KCPHILVATPGAL 1414
ALI+APTREL +Q+ KYT + V VGGM +KQL+ L + ILVATPG L
Sbjct: 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRL 224
|
Length = 475 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 6e-09
Identities = 45/130 (34%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALI+APTRELA+Q+ + T +K+ GG +KQL++L IL+ T G L
Sbjct: 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRL- 144
Query: 1416 LKRIDLAKSIEYLESKIKKNRPDNWLEKAAK--DMDIIIDDENLIQ--PKANSRENALMS 1471
ID AK I+ L++A + D+ I D L + P AN R N L S
Sbjct: 145 ---IDYAKQNHINLGAIQVVV----LDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFS 197
Query: 1472 KALVSKRKEL 1481
L + +EL
Sbjct: 198 ATLSYRVREL 207
|
Length = 423 |
| >gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 7e-09
Identities = 52/283 (18%), Positives = 104/283 (36%), Gaps = 58/283 (20%)
Query: 905 VKVACVVGGMSTEKQLRILNKCPH----ILVATPGRL-----WEFIQLGHFHLTELYKIN 955
++ A + +S E++ ++LN+ +L +P RL E ++ I+
Sbjct: 82 IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRL--------PIS 133
Query: 956 YLVIDETDRMIESGH-F-PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQ 1013
+ IDE + + GH F P+ + + + +AT T ++
Sbjct: 134 LVAIDEAHCISQWGHDFRPDYRRLGR---LRAGLPNPPVLALTATATPRVR--------- 181
Query: 1014 SKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL--YY 1071
+++ L ++ I + + K EK
Sbjct: 182 -------------DDIREQLGLQDANI--------FRGSFDRPNLALKVVEKGEPSDQLA 220
Query: 1072 FIL----QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
F+ Q +++C + V+ L + L S HA ++ +R + F +
Sbjct: 221 FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDE 280
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
+++AT+ G+D P + VIHY +P + E Y +GR R
Sbjct: 281 IKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGR 323
|
Length = 590 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 4e-08
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
LIL PTRELA+QV + + K+T + +A + GG++ + ++ I+VATPG L
Sbjct: 77 LILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRL 134
|
Length = 434 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 1e-07
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
L+LAPTRELA+QV + D K+ V V + GG + QLR L + P I+V TPG L
Sbjct: 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLL 137
Query: 1415 -SLKR--IDLAK 1423
LKR +DL+K
Sbjct: 138 DHLKRGTLDLSK 149
|
Length = 629 |
| >gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 55/279 (19%), Positives = 103/279 (36%), Gaps = 53/279 (18%)
Query: 908 ACVVGGMST-EKQLRILNKCP----HILVATPGRLW---EFIQLGHFHLTELYKINYLVI 959
A + + E+Q +L +L TP + +Q L E I + +
Sbjct: 78 ATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQ----TLEERKGITLIAV 133
Query: 960 DETDRMIESGH-F-PELKNILDRVTMTETSQPRQTFV-FSATLTHSLKN----SLNLKKG 1012
DE + + GH F P+ K + + P + +AT + S++ LNLK
Sbjct: 134 DEAHCISQWGHDFRPDYK----ALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNP 189
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
Q + P++ ++ + DL +
Sbjct: 190 QIFCTSFDR--PNLY--YEVRRKTPKILEDLLR-------------------------FI 220
Query: 1073 ILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+ G++ +++C S +++T L L + HA + R +F+ ++
Sbjct: 221 RKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVV 280
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
+AT G++ P + VIHY +P++ E Y SGR R
Sbjct: 281 VATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGR 319
|
All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination, recombinational repair, and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 470 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
ALIL PTRELA Q+ ++ D KY ++ V GG+S Q+ L +LVATPG L
Sbjct: 78 ALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRL 136
|
Length = 456 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 2e-07
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
ALILAPTRELAIQ+ + G ++ A V GG+ +KQ +L + +++ATPG L
Sbjct: 87 ALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRL- 145
Query: 1416 LKRIDLAK 1423
ID K
Sbjct: 146 ---IDYVK 150
|
Length = 572 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-07
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1111 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI-YIHRSGRTA 1169
M+Q+++ + +D+FR ++L+AT V GLDIP ++ VI Y P SEI I R GRT
Sbjct: 409 MSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYE-PVPSEIRSIQRKGRTG 467
Query: 1170 RANNEGLTLVLIESDE 1185
R G +VL+
Sbjct: 468 RKRK-GRVVVLVTEGT 482
|
Length = 542 |
| >gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-07
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 537 YYFIL----QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 592
F+ Q +++C + V+ L + L S HA ++ +R + F +
Sbjct: 219 LAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLN 278
Query: 593 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
+++AT+ G+D P + VIHY +P + E Y +GR R
Sbjct: 279 DEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGR 323
|
Length = 590 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 6e-07
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 548 LVFCNSISSVKRLTQLLTM---LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
+VF +S L +T+ LK L +H + ++R + + F +++AT V
Sbjct: 371 VVFVSSRLGADLLANAITVVTGLKA--LSIHGEKSMKERREVMKSFLVGEVPVIVATGVL 428
Query: 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESD 651
RG+D+ + VI + +P T + YIH+ GR +R +G +V + +
Sbjct: 429 GRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEE 475
|
Length = 518 |
| >gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 8e-07
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 26/156 (16%)
Query: 494 EEIQDLLNIKSPKI-----------VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 542
E+I LN+K+P+I ++ K KIL + L + +
Sbjct: 178 EDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTP--------KIL------EDLLRFIRKE 223
Query: 543 HPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 601
G++ +++C S +++T L L + HA + R +F+ +++AT
Sbjct: 224 FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVAT 283
Query: 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
G++ P + VIHY +P++ E Y SGR R
Sbjct: 284 VAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGR 319
|
All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination, recombinational repair, and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 470 |
| >gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 8e-07
Identities = 67/280 (23%), Positives = 108/280 (38%), Gaps = 54/280 (19%)
Query: 905 VKVACVVGGMSTEKQLRILNKCP----HILVATPGRLW--EFI-QLGHFHLTELYKINYL 957
V AC+ + E+QL ++ C +L P RL F+ L H++ L
Sbjct: 90 VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPA------LL 143
Query: 958 VIDETDRMIESGH-F-PELKNILDRVTMTETSQPRQTF----VFSATLTHSLKNSLNLKK 1011
+DE + + GH F PE + Q RQ F + T T
Sbjct: 144 AVDEAHCISQWGHDFRPEYAAL---------GQLRQRFPTLPFMALTAT----------- 183
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKI-VDLTEKIGITKTLTESKILCKHDEKDSYLY 1070
+ ++ D I RL L + P I + ++ I TL E K D +
Sbjct: 184 ----ADDTTRQD--IVRL---LGLNDPLIQISSFDRPNIRYTLVE-----KFKPLDQLMR 229
Query: 1071 YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130
Y Q +++CNS + V+ L S HA ++ R + F+ + I
Sbjct: 230 YVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQI 289
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
++AT G++ P + V+H+ +PR E Y +GR R
Sbjct: 290 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR 329
|
Length = 607 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 1e-06
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
AL+L PTRELA QV I ++ P +KV + GG+ Q+ L HI+V TPG
Sbjct: 75 ALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPG 132
|
Length = 460 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-06
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
A++L PTREL +QV++ GK P K A VVGG + +QL + + ++V TPG L
Sbjct: 199 AMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRL- 257
Query: 1416 LKRIDL 1421
IDL
Sbjct: 258 ---IDL 260
|
Length = 518 |
| >gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 3e-06
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 6/144 (4%)
Query: 495 EIQDLLNIKSPKI-VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS 553
+I LL + P I + ++ I TL E K D + Y Q +++CNS
Sbjct: 191 DIVRLLGLNDPLIQISSFDRPNIRYTLVE-----KFKPLDQLMRYVQEQRGKSGIIYCNS 245
Query: 554 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 613
+ V+ L S HA ++ R + F+ + I++AT G++ P +
Sbjct: 246 RAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNV 305
Query: 614 EHVIHYHVPRTSEIYIHRSGRTAR 637
V+H+ +PR E Y +GR R
Sbjct: 306 RFVVHFDIPRNIESYYQETGRAGR 329
|
Length = 607 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 5e-06
Identities = 26/57 (45%), Positives = 32/57 (56%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALILAPTRELA Q+Q +L G Y V+ VGG + L H++V TPG
Sbjct: 99 ALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPG 155
|
Length = 401 |
| >gnl|CDD|222037 pfam13307, Helicase_C_2, Helicase C-terminal domain | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 6e-06
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 536 LYYFILQHPGRTLVFCNSISSVKRLTQLL--TMLKCSPLPLHASMNQRQRLKNLDRFRDQ 593
+ + PG LV S S ++++ +LL +L+ L R++L L+RF+
Sbjct: 1 ILELLEAIPGGVLVLFPSYSLLEQVAELLASELLEKGIELLVQGEGSREKL--LERFKKG 58
Query: 594 NNSILLATDVAARGLDIPG 612
+IL G+D PG
Sbjct: 59 KGAILFGVGSFWEGIDFPG 77
|
This domain is the second of two tandem AAA domains found in a wide variety of helicase enzymes. Length = 165 |
| >gnl|CDD|222037 pfam13307, Helicase_C_2, Helicase C-terminal domain | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 6e-06
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLL--TMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
+ + PG LV S S ++++ +LL +L+ L R++L L+RF+
Sbjct: 1 ILELLEAIPGGVLVLFPSYSLLEQVAELLASELLEKGIELLVQGEGSREKL--LERFKKG 58
Query: 1127 NNSILLATDVAARGLDIPG 1145
+IL G+D PG
Sbjct: 59 KGAILFGVGSFWEGIDFPG 77
|
This domain is the second of two tandem AAA domains found in a wide variety of helicase enzymes. Length = 165 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 43/197 (21%), Positives = 86/197 (43%), Gaps = 38/197 (19%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
FNI + +R +++ F + T Q +P + + ++++ A TGSGKT A +P++ ++
Sbjct: 5 FNILDPRVREWFKRKFTSLTPPQRYAIP-EIHSGENVLIIAPTGSGKTEAAFLPVINELL 63
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+ + E+ +YAL ++P + L +
Sbjct: 64 SLGKGKLED----------------------------------GIYALYISPLKALNNDI 89
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ + + + ++VA G ++ ++L PHIL+ TP L I L EL
Sbjct: 90 RRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESL--AILLNSPKFRELL 147
Query: 336 K-INYLVIDETDRMIES 351
+ + Y+++DE + ES
Sbjct: 148 RDVRYVIVDEIHALAES 164
|
Length = 814 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 4e-05
Identities = 51/298 (17%), Positives = 105/298 (35%), Gaps = 53/298 (17%)
Query: 1079 RTLVFCNSISSVKRLTQLLTM-LKCSPLPL-------HASMNQRQRLKNLDRFRDQNNSI 1130
+TLVF S V+ L L L A +++ +R + F++
Sbjct: 308 QTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLG 367
Query: 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEI-YIHRSGRTARANNEGLTLVLIESDEIPLY 1189
++AT+ G+DI ++ VI Y P S + + R+GR R E L LV++ SD + Y
Sbjct: 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSY 427
Query: 1190 IK-----MFNSLEKKVDLP------DFPIDESVLSLIK-KRIDLAKSIEYLESKIKKNRP 1237
+ + V+ ++ +D +L + + + S ++
Sbjct: 428 YLRHPEELLETGFGPVESVRVDDNNEYLLDGHLLCADAELPLKDRELLPSDGSLEEEIAR 487
Query: 1238 -----------DNWLHRSGRTA-------RANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1279
++ S R + + GL+ I + I + +K L ++V
Sbjct: 488 SLVGEGQLHHENDKYRPSSRGLCPREGASQVSLRGLSEDSIVA--IDVSLKETGRLLEEV 545
Query: 1280 DLPDFP---IDESVL-----SLIKKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDI 1329
D ++ + +DLA+ ++ + ++ D+
Sbjct: 546 DESSAIRSLHPGAIYLHRGVTYAAVDLDLAEKKAFVR----ADDVAEYVTLPLDFTDL 599
|
Length = 851 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 6e-05
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 1357 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALSL 1416
L+LAPTRELA Q++ G + ++ GG+ Q+ L + IL+A PG L
Sbjct: 207 LVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRL-- 264
Query: 1417 KRIDLAKSIEYLESKI 1432
I++LES +
Sbjct: 265 --------IDFLESNV 272
|
Length = 545 |
| >gnl|CDD|224120 COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 7/114 (6%)
Query: 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKD--SYLYYFILQHPGRTLVFCNSISSVKR 559
+ SP + ++ + L E + +YL + PG LV S +KR
Sbjct: 437 LPSPFNYEEQGQLYVPTDLPEPRE--PELLAKLAAYLREILKASPGGVLVLFPSYEYLKR 494
Query: 560 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ-NNSILLATDVAARGLDIPG 612
+ + L + + +R + L++F+ IL+ G+D PG
Sbjct: 495 VAERLKD--ERSTLPVLTQGEDEREELLEKFKASGEGLILVGGGSFWEGVDFPG 546
|
Length = 654 |
| >gnl|CDD|224120 COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 7/114 (6%)
Query: 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKD--SYLYYFILQHPGRTLVFCNSISSVKR 1092
+ SP + ++ + L E + +YL + PG LV S +KR
Sbjct: 437 LPSPFNYEEQGQLYVPTDLPEPRE--PELLAKLAAYLREILKASPGGVLVLFPSYEYLKR 494
Query: 1093 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ-NNSILLATDVAARGLDIPG 1145
+ + L + + +R + L++F+ IL+ G+D PG
Sbjct: 495 VAERLKD--ERSTLPVLTQGEDEREELLEKFKASGEGLILVGGGSFWEGVDFPG 546
|
Length = 654 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 3e-04
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Query: 546 RTLVFCNSISSVKRLTQLLTM-LKCSPLPL-------HASMNQRQRLKNLDRFRDQNNSI 597
+TLVF S V+ L L L A +++ +R + F++
Sbjct: 308 QTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLG 367
Query: 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEI-YIHRSGRTARANNEGLTVVLIESD 651
++AT+ G+DI ++ VI Y P S + + R+GR R E L +V++ SD
Sbjct: 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422
|
Length = 851 |
| >gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 0.001
Identities = 53/229 (23%), Positives = 93/229 (40%), Gaps = 58/229 (25%)
Query: 1118 KNLDRFRDQNNSIL--LAT--DVAARGLDIPG-IEHVIHYHVPRTSEIYIHR-SGRTARA 1171
+ ++F + +L +A+ V RG+D+P I + I Y VP+ + S A
Sbjct: 367 RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK------FKFSLEEELA 420
Query: 1172 NNEGLTLVLI---ESDEIPLYIKMFNSLEKKVD-LPDFP-----IDESVLSLIKKRIDLA 1222
L +L ++ + L +++ L + L++ ++
Sbjct: 421 PPFLLLRLLSLLPLIKNDKEIRELVSYLRRRLRNLSPYELQMLAFAIREGELLEGVLEEL 480
Query: 1223 KSI--EYLES-----KIKKNR---------------PD--NWLHRSGRTARANNEGLTL- 1257
+S+ EYL+ KI ++ PD ++ SGRT+R GLT
Sbjct: 481 RSLVKEYLKDEEFLEKISESGDLVLRKEEGKYYIVIPDVTTYIQASGRTSRLYAGGLTKG 540
Query: 1258 --VLIESDEIPLYIKMFNSLEKKVD--LPDF---PIDESVLSLIKKRID 1299
VL+ DE K+F SL+KK+ LP+ P+ E L + + ID
Sbjct: 541 LSVLLVDDE-----KLFESLKKKLRWLLPEIEFKPLSEVDLEELLREID 584
|
Length = 1176 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.002
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 529 HDEKDSY-LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH-ASMNQRQRLKN 586
Y +++ TL+F N+ S +RL L L + +H S+++ RL+
Sbjct: 237 ELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEV 296
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
+R ++ ++AT G+DI I+ VI P++ ++ R GR
Sbjct: 297 EERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGR 344
|
Length = 814 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1493 | |||
| KOG0347|consensus | 731 | 100.0 | ||
| KOG0330|consensus | 476 | 100.0 | ||
| KOG0330|consensus | 476 | 100.0 | ||
| KOG0338|consensus | 691 | 100.0 | ||
| KOG0347|consensus | 731 | 100.0 | ||
| KOG0331|consensus | 519 | 100.0 | ||
| KOG0338|consensus | 691 | 100.0 | ||
| KOG0340|consensus | 442 | 100.0 | ||
| KOG0342|consensus | 543 | 100.0 | ||
| KOG0331|consensus | 519 | 100.0 | ||
| KOG0343|consensus | 758 | 100.0 | ||
| KOG0333|consensus | 673 | 100.0 | ||
| KOG0345|consensus | 567 | 100.0 | ||
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0328|consensus | 400 | 100.0 | ||
| KOG0340|consensus | 442 | 100.0 | ||
| KOG0342|consensus | 543 | 100.0 | ||
| KOG0326|consensus | 459 | 100.0 | ||
| KOG0343|consensus | 758 | 100.0 | ||
| KOG0333|consensus | 673 | 100.0 | ||
| KOG0345|consensus | 567 | 100.0 | ||
| KOG0348|consensus | 708 | 100.0 | ||
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0348|consensus | 708 | 100.0 | ||
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| KOG0335|consensus | 482 | 100.0 | ||
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| KOG0336|consensus | 629 | 100.0 | ||
| KOG0346|consensus | 569 | 100.0 | ||
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| KOG0341|consensus | 610 | 100.0 | ||
| KOG0328|consensus | 400 | 100.0 | ||
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| KOG0326|consensus | 459 | 100.0 | ||
| KOG0339|consensus | 731 | 100.0 | ||
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| KOG0336|consensus | 629 | 100.0 | ||
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| KOG0335|consensus | 482 | 100.0 | ||
| KOG0332|consensus | 477 | 100.0 | ||
| KOG0350|consensus | 620 | 100.0 | ||
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| KOG0346|consensus | 569 | 100.0 | ||
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| KOG0334|consensus | 997 | 100.0 | ||
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0341|consensus | 610 | 100.0 | ||
| KOG0350|consensus | 620 | 100.0 | ||
| KOG0339|consensus | 731 | 100.0 | ||
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| KOG0337|consensus | 529 | 100.0 | ||
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0327|consensus | 397 | 100.0 | ||
| KOG0332|consensus | 477 | 100.0 | ||
| KOG0334|consensus | 997 | 100.0 | ||
| KOG0337|consensus | 529 | 100.0 | ||
| KOG4284|consensus | 980 | 100.0 | ||
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| KOG0344|consensus | 593 | 100.0 | ||
| KOG0344|consensus | 593 | 100.0 | ||
| KOG0951|consensus | 1674 | 100.0 | ||
| KOG0327|consensus | 397 | 100.0 | ||
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 100.0 | |
| KOG4284|consensus | 980 | 100.0 | ||
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| KOG0952|consensus | 1230 | 100.0 | ||
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| KOG0329|consensus | 387 | 100.0 | ||
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| KOG0329|consensus | 387 | 100.0 | ||
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 100.0 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 100.0 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 100.0 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 100.0 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 100.0 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 100.0 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 100.0 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 100.0 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 100.0 | |
| KOG0349|consensus | 725 | 100.0 | ||
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 100.0 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 100.0 | |
| KOG0354|consensus | 746 | 100.0 | ||
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 100.0 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 100.0 | |
| KOG0349|consensus | 725 | 100.0 | ||
| PRK14701 | 1638 | reverse gyrase; Provisional | 100.0 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 100.0 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 100.0 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 100.0 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 100.0 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 100.0 | |
| KOG0952|consensus | 1230 | 100.0 | ||
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 100.0 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 100.0 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 100.0 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 100.0 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 100.0 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 100.0 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 100.0 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 100.0 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 100.0 | |
| KOG0352|consensus | 641 | 100.0 | ||
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 100.0 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 100.0 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 100.0 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 100.0 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 100.0 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 100.0 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 100.0 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 100.0 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 100.0 | |
| KOG0354|consensus | 746 | 100.0 | ||
| KOG0351|consensus | 941 | 100.0 | ||
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 100.0 | |
| KOG0352|consensus | 641 | 99.98 | ||
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.97 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.97 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.97 | |
| KOG0951|consensus | 1674 | 99.97 | ||
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.97 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.97 | |
| KOG0351|consensus | 941 | 99.97 | ||
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.97 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.97 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.96 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.96 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.96 | |
| KOG0353|consensus | 695 | 99.96 | ||
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.95 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.95 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.95 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.95 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.95 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.95 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.95 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.94 | |
| KOG0353|consensus | 695 | 99.94 | ||
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.94 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.94 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.94 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.93 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.93 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.93 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.93 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.93 | |
| KOG0947|consensus | 1248 | 99.93 | ||
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.93 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.93 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.93 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.93 | |
| KOG2340|consensus | 698 | 99.92 | ||
| PRK09694 | 878 | helicase Cas3; Provisional | 99.92 | |
| KOG0948|consensus | 1041 | 99.92 | ||
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.92 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.92 | |
| KOG0947|consensus | 1248 | 99.92 | ||
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.91 | |
| KOG0926|consensus | 1172 | 99.91 | ||
| KOG0950|consensus | 1008 | 99.91 | ||
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.91 | |
| KOG0950|consensus | 1008 | 99.91 | ||
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.91 | |
| KOG0948|consensus | 1041 | 99.91 | ||
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.9 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.9 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.9 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.89 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 99.88 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.88 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.87 | |
| KOG0922|consensus | 674 | 99.87 | ||
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.85 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.85 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.84 | |
| KOG0923|consensus | 902 | 99.84 | ||
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.83 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.82 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.82 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.82 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.81 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.81 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.79 | |
| KOG0924|consensus | 1042 | 99.79 | ||
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.78 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.78 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.78 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.77 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.77 | |
| KOG0949|consensus | 1330 | 99.76 | ||
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.75 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.75 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.74 | |
| KOG0922|consensus | 674 | 99.73 | ||
| KOG0920|consensus | 924 | 99.73 | ||
| KOG0949|consensus | 1330 | 99.72 | ||
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.72 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.72 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.71 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.7 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.7 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.69 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.68 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.68 | |
| KOG0923|consensus | 902 | 99.68 | ||
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.67 | |
| KOG0920|consensus | 924 | 99.67 | ||
| KOG1123|consensus | 776 | 99.67 | ||
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.65 | |
| KOG0924|consensus | 1042 | 99.64 | ||
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.64 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.64 | |
| KOG4150|consensus | 1034 | 99.64 | ||
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.64 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 99.62 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.62 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.61 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.6 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.6 | |
| KOG4150|consensus | 1034 | 99.6 | ||
| KOG0926|consensus | 1172 | 99.6 | ||
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.6 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.6 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.58 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.58 | |
| KOG0925|consensus | 699 | 99.58 | ||
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 99.56 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 99.55 | |
| KOG0953|consensus | 700 | 99.55 | ||
| KOG0385|consensus | 971 | 99.55 | ||
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.54 | |
| KOG0387|consensus | 923 | 99.52 | ||
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 99.51 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 99.5 | |
| KOG0385|consensus | 971 | 99.5 | ||
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.49 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 99.49 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.44 | |
| KOG1123|consensus | 776 | 99.43 | ||
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.42 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.42 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.42 | |
| KOG0925|consensus | 699 | 99.41 | ||
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.39 | |
| KOG0390|consensus | 776 | 99.39 | ||
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.39 | |
| KOG0953|consensus | 700 | 99.37 | ||
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 99.36 | |
| KOG0387|consensus | 923 | 99.36 | ||
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.34 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.34 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 99.31 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.31 | |
| KOG0392|consensus | 1549 | 99.3 | ||
| KOG0384|consensus | 1373 | 99.3 | ||
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.28 | |
| KOG0390|consensus | 776 | 99.27 | ||
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 99.26 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 99.26 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 99.24 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 99.23 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.22 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 99.2 | |
| KOG2340|consensus | 698 | 99.16 | ||
| KOG0384|consensus | 1373 | 99.15 | ||
| KOG1000|consensus | 689 | 99.13 | ||
| KOG1000|consensus | 689 | 99.11 | ||
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 99.1 | |
| KOG0389|consensus | 941 | 99.1 | ||
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 99.06 | |
| KOG0392|consensus | 1549 | 99.02 | ||
| KOG0389|consensus | 941 | 99.02 | ||
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.02 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.83 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.74 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.73 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.73 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.73 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.73 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.72 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.72 | |
| KOG0386|consensus | 1157 | 98.62 | ||
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 98.62 | |
| KOG0386|consensus | 1157 | 98.6 | ||
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 98.6 | |
| KOG0921|consensus | 1282 | 98.57 | ||
| KOG1002|consensus | 791 | 98.57 | ||
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 98.55 | |
| KOG4439|consensus | 901 | 98.54 | ||
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.49 | |
| KOG4439|consensus | 901 | 98.46 | ||
| KOG1002|consensus | 791 | 98.45 | ||
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 98.44 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 98.41 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 98.37 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 98.35 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 98.32 | |
| KOG0388|consensus | 1185 | 98.31 | ||
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 98.26 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.21 | |
| KOG1015|consensus | 1567 | 98.2 | ||
| KOG0921|consensus | 1282 | 98.19 | ||
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 98.04 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 97.9 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 97.86 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 97.83 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 97.66 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 97.64 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 97.4 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.39 | |
| KOG0391|consensus | 1958 | 97.38 | ||
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.29 | |
| KOG0391|consensus | 1958 | 96.98 | ||
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 96.96 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 96.94 | |
| KOG1802|consensus | 935 | 96.92 | ||
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 96.92 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.91 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 96.91 | |
| KOG0388|consensus | 1185 | 96.91 | ||
| KOG1803|consensus | 649 | 96.9 | ||
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 96.89 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 96.85 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 96.82 | |
| KOG1803|consensus | 649 | 96.8 | ||
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.8 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 96.8 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 96.74 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 96.72 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 96.69 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 96.66 | |
| KOG1132|consensus | 945 | 96.66 | ||
| KOG1132|consensus | 945 | 96.54 | ||
| PRK10536 | 262 | hypothetical protein; Provisional | 96.49 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 96.47 | |
| KOG1802|consensus | 935 | 96.41 | ||
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 95.91 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 95.81 | |
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 95.74 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 95.64 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 95.56 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 95.55 | |
| KOG1015|consensus | 1567 | 95.53 | ||
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 95.53 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 95.49 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 95.48 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 95.33 | |
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 95.28 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 95.09 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 95.07 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 95.05 | |
| KOG0701|consensus | 1606 | 94.95 | ||
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 94.94 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 94.84 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 94.83 | |
| PRK08181 | 269 | transposase; Validated | 94.8 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 94.79 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 94.78 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 94.76 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 94.56 | |
| PRK06526 | 254 | transposase; Provisional | 94.45 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 94.34 | |
| PRK08181 | 269 | transposase; Validated | 94.3 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 94.29 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 94.26 | |
| KOG1805|consensus | 1100 | 94.25 | ||
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 94.14 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 94.06 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 94.04 | |
| KOG1805|consensus | 1100 | 94.01 | ||
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 93.93 | |
| PRK06526 | 254 | transposase; Provisional | 93.82 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 93.79 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 93.68 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 93.32 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 93.3 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 93.13 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 93.04 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 93.03 | |
| PRK12377 | 248 | putative replication protein; Provisional | 92.93 | |
| KOG0701|consensus | 1606 | 92.87 | ||
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 92.76 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 92.68 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 92.51 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 92.45 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 92.27 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 92.25 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 92.21 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 92.18 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 92.12 | |
| PRK12377 | 248 | putative replication protein; Provisional | 92.02 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 91.95 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 91.95 | |
| PRK08727 | 233 | hypothetical protein; Validated | 91.88 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 91.83 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 91.83 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 91.76 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 91.69 | |
| PRK08727 | 233 | hypothetical protein; Validated | 91.61 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 91.57 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 91.55 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 91.44 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 91.43 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 91.13 | |
| PRK08116 | 268 | hypothetical protein; Validated | 91.12 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 91.07 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 91.05 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 91.03 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 90.99 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 90.95 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 90.92 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 90.89 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 90.86 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 90.78 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 90.69 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 90.64 | |
| PRK08116 | 268 | hypothetical protein; Validated | 90.62 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 90.59 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 90.55 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 90.49 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 90.35 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 90.25 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 90.18 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 90.18 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 90.18 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 90.13 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 90.11 | |
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General funct | 90.06 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 90.0 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 89.98 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 89.86 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 89.85 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 89.82 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 89.63 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 89.29 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 89.28 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 89.25 | |
| PF05127 | 177 | Helicase_RecD: Helicase; InterPro: IPR007807 This | 89.21 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 89.16 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 89.11 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 89.1 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 89.08 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 89.06 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 89.02 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 88.97 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 88.92 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 88.87 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 88.82 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 88.8 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 88.47 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 88.24 | |
| KOG1131|consensus | 755 | 88.08 | ||
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 88.05 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 88.02 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 87.99 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 87.91 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 87.86 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 87.85 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 87.66 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 87.59 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 87.56 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 87.5 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 87.26 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 87.18 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 87.15 | |
| KOG0742|consensus | 630 | 87.13 | ||
| PHA02533 | 534 | 17 large terminase protein; Provisional | 86.99 |
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-77 Score=667.26 Aligned_cols=465 Identities=47% Similarity=0.788 Sum_probs=411.7
Q ss_pred hhhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCc
Q psy16310 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 841 (1493)
Q Consensus 762 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~ 841 (1493)
....+++.|.+|+++..++++|..+||..|||||..+||.++.+..|+++.|.|||||||||.+||++.++......
T Consensus 175 ~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s--- 251 (731)
T KOG0347|consen 175 SSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDS--- 251 (731)
T ss_pred ccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchH---
Confidence 34567888999999999999999999999999999999998877799999999999999999999999776532100
Q ss_pred ccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH
Q psy16310 842 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 921 (1493)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~ 921 (1493)
.+++. .......+.+||++||||||.|+.+++..++...++++..++||.+...|.+
T Consensus 252 ---------------~e~~~--------~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqR 308 (731)
T KOG0347|consen 252 ---------------QELSN--------TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQR 308 (731)
T ss_pred ---------------hhhhh--------HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHH
Confidence 00100 1123344479999999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEeccccc
Q psy16310 922 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001 (1493)
Q Consensus 922 ~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~ 1001 (1493)
.|+..|+|||+||||||.++..+..++..|.++++||+||||+|++.|||..+..++..|........+|+++||||++-
T Consensus 309 lL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~ 388 (731)
T KOG0347|consen 309 LLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTL 388 (731)
T ss_pred HHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeeh
Confidence 99999999999999999999998888889999999999999999999999999999999986666778999999999985
Q ss_pred chHhHHhhhccCcCcccccCCCchhHHHHhHhccCC-CcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcE
Q psy16310 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 1080 (1493)
Q Consensus 1002 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 1080 (1493)
.....+....... ..-......+..++..+++.. |.++++.....+...+.+..+.|+..+|..+|++|+.++||++
T Consensus 389 ~~~~~~~~~~k~~--~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrT 466 (731)
T KOG0347|consen 389 VLQQPLSSSRKKK--DKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRT 466 (731)
T ss_pred hhcChhHHhhhcc--chhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCce
Confidence 4443332111100 111223346777788888776 5899999999999999999999999999999999999999999
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhH
Q psy16310 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 1160 (1493)
Q Consensus 1081 IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~ 1160 (1493)
|||||++.++.+|+-+|..+++....+|+.|.|.+|.+.+++|++....|||||||+|||+|||+|.|||||.+|++.+.
T Consensus 467 lVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtsei 546 (731)
T KOG0347|consen 467 LVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEI 546 (731)
T ss_pred EEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhh-hccCCch
Q psy16310 1161 YIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKI-KKNRPDN 1239 (1493)
Q Consensus 1161 yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~ 1239 (1493)
|+||.|||+|++..|.+++||.|.++..|.++++.+.+..+++.||+..+++..++.|+.+|.+|+.++.+. .....++
T Consensus 547 YVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei~~~e~k~~~v~~~~s 626 (731)
T KOG0347|consen 547 YVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREIDKLEIKSKRVRKEES 626 (731)
T ss_pred eEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999554 3457889
Q ss_pred HHHHHhhhhhhcccc
Q psy16310 1240 WLHRSGRTARANNEG 1254 (1493)
Q Consensus 1240 ~l~~~~~~~~~~~~~ 1254 (1493)
|+..+|..++...++
T Consensus 627 WlkkaA~el~id~d~ 641 (731)
T KOG0347|consen 627 WLKKAADELGIDVDE 641 (731)
T ss_pred HHHHHHHHhCCcccc
Confidence 999999987755444
|
|
| >KOG0330|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-72 Score=603.26 Aligned_cols=392 Identities=37% Similarity=0.626 Sum_probs=357.6
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccC
Q psy16310 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 844 (1493)
Q Consensus 765 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~ 844 (1493)
....+|.+|++++.+++++...||..||+||.++||.++ +|+|+|+.|+||||||.+|++||+++++..
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L-~g~dvIglAeTGSGKT~afaLPIl~~LL~~---------- 126 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVAL-GGRDVIGLAETGSGKTGAFALPILQRLLQE---------- 126 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhh-CCCcEEEEeccCCCchhhhHHHHHHHHHcC----------
Confidence 445689999999999999999999999999999999655 889999999999999999999999999863
Q ss_pred CcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc
Q psy16310 845 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 924 (1493)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~ 924 (1493)
...+++|||+||||||.||.+.|..++...++++.++.||.....|...+.
T Consensus 127 -----------------------------p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~ 177 (476)
T KOG0330|consen 127 -----------------------------PKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLS 177 (476)
T ss_pred -----------------------------CCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhh
Confidence 233789999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 925 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 925 ~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
+.|+|+|||||+||+++..... ..+.++++||+||||+++++.|.+.+..|+..+ |..+|+++||||||..+.
T Consensus 178 kkPhilVaTPGrL~dhl~~Tkg--f~le~lk~LVlDEADrlLd~dF~~~ld~ILk~i-----p~erqt~LfsATMt~kv~ 250 (476)
T KOG0330|consen 178 KKPHILVATPGRLWDHLENTKG--FSLEQLKFLVLDEADRLLDMDFEEELDYILKVI-----PRERQTFLFSATMTKKVR 250 (476)
T ss_pred cCCCEEEeCcHHHHHHHHhccC--ccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhc-----CccceEEEEEeecchhhH
Confidence 9999999999999999984322 346789999999999999999999999999998 488999999999997776
Q ss_pred hHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CCcEEEE
Q psy16310 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVF 1083 (1493)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF 1083 (1493)
... ...+..|..+.....+.+...+.+.|...+...|..+|++++... +..+|||
T Consensus 251 kL~------------------------rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF 306 (476)
T KOG0330|consen 251 KLQ------------------------RASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVF 306 (476)
T ss_pred HHH------------------------hhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEE
Confidence 543 235667888888888899999999999999999999999999876 5679999
Q ss_pred ecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHH
Q psy16310 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163 (1493)
Q Consensus 1084 ~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiq 1163 (1493)
|+|+..+++++-.|+.+|+.+..+||+|+|..|...++.|++|..+|||||||++||+|+|.|++|||||+|.+..+|||
T Consensus 307 ~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIH 386 (476)
T KOG0330|consen 307 CNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIH 386 (476)
T ss_pred EeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q psy16310 1164 RSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLE 1229 (1493)
Q Consensus 1164 r~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~ 1229 (1493)
|+||+||+|+.|.+|.|++..|+..+.+|+..++++ ++.++++......+.+|+..|.+....+
T Consensus 387 RvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkk--l~~~~~~~~~~~~l~erv~eA~~~a~m~ 450 (476)
T KOG0330|consen 387 RVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKK--LPEYKVDKNEVMSLNERVAEAQKEAGME 450 (476)
T ss_pred HcccccccCCCcceEEEEehhhhHHHHHHHHHHhcC--CCccCcchHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999886 4567778877888888887776544433
|
|
| >KOG0330|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-67 Score=565.59 Aligned_cols=360 Identities=38% Similarity=0.639 Sum_probs=311.5
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCC
Q psy16310 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 227 (1493)
Q Consensus 148 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 227 (1493)
....+|.++++.+.+++++...||+.||+||+++||.+ ++|+|+|+.|.||||||.+|+|||+++|+..
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~-L~g~dvIglAeTGSGKT~afaLPIl~~LL~~---------- 126 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVA-LGGRDVIGLAETGSGKTGAFALPILQRLLQE---------- 126 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchh-hCCCcEEEEeccCCCchhhhHHHHHHHHHcC----------
Confidence 34567999999999999999999999999999999954 5889999999999999999999999999752
Q ss_pred CccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc
Q psy16310 228 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 307 (1493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~ 307 (1493)
+..+++|||+||||||.||...|..++...|++++++.||++...+...+.
T Consensus 127 -----------------------------p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~ 177 (476)
T KOG0330|consen 127 -----------------------------PKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLS 177 (476)
T ss_pred -----------------------------CCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhh
Confidence 234789999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
+.|+|||||||+|++++.+... ..|.++++||+||||+++++.|.+.+.+|++.+
T Consensus 178 kkPhilVaTPGrL~dhl~~Tkg--f~le~lk~LVlDEADrlLd~dF~~~ld~ILk~i----------------------- 232 (476)
T KOG0330|consen 178 KKPHILVATPGRLWDHLENTKG--FSLEQLKFLVLDEADRLLDMDFEEELDYILKVI----------------------- 232 (476)
T ss_pred cCCCEEEeCcHHHHHHHHhccC--ccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhc-----------------------
Confidence 9999999999999999985432 235589999999999999999999999999988
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 467 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1493)
+..+|+++||||||..+.++.+.. ...+..+....++.....+.+.
T Consensus 233 ----------p~erqt~LfsATMt~kv~kL~ras------------------------l~~p~~v~~s~ky~tv~~lkQ~ 278 (476)
T KOG0330|consen 233 ----------PRERQTFLFSATMTKKVRKLQRAS------------------------LDNPVKVAVSSKYQTVDHLKQT 278 (476)
T ss_pred ----------CccceEEEEEeecchhhHHHHhhc------------------------cCCCeEEeccchhcchHHhhhh
Confidence 455899999999999887766422 2233333444444444444444
Q ss_pred hhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCc
Q psy16310 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGR 546 (1493)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~ 546 (1493)
+..++.. .|..+|.+++.+. +..
T Consensus 279 ylfv~~k--------------------------------------------------------~K~~yLV~ll~e~~g~s 302 (476)
T KOG0330|consen 279 YLFVPGK--------------------------------------------------------DKDTYLVYLLNELAGNS 302 (476)
T ss_pred eEecccc--------------------------------------------------------ccchhHHHHHHhhcCCc
Confidence 4444333 3444555555544 468
Q ss_pred EEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChH
Q psy16310 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626 (1493)
Q Consensus 547 ~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~ 626 (1493)
+||||+++.++.+++-+|+.+|+.+..+||.|++..|...++.|+.|...|||||||++||+|||.|++|||||+|.+..
T Consensus 303 ~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~sk 382 (476)
T KOG0330|consen 303 VIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSK 382 (476)
T ss_pred EEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCeEEEEecCCcchhhhhhhhh
Q psy16310 627 IYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQ 662 (1493)
Q Consensus 627 ~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~ 662 (1493)
+||||+|||||+|++|.++.|++.-|+..+.+++..
T Consensus 383 DYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~ 418 (476)
T KOG0330|consen 383 DYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHA 418 (476)
T ss_pred HHHHHcccccccCCCcceEEEEehhhhHHHHHHHHH
Confidence 999999999999999999999999999888887543
|
|
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-67 Score=578.55 Aligned_cols=362 Identities=36% Similarity=0.575 Sum_probs=320.6
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
..+|.+++|+.+|++++..+||..|||||..+||.++ -|+|+++||-||||||.||++|+|++++...
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPval-lgkDIca~A~TGsGKTAAF~lPiLERLlYrP----------- 247 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVAL-LGKDICACAATGSGKTAAFALPILERLLYRP----------- 247 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHh-hcchhhheecccCCchhhhHHHHHHHHhcCc-----------
Confidence 4579999999999999999999999999999999766 5789999999999999999999999998642
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
......++|||||||||+.|++.+.++++.+..+.+++++||.+...|...|+..
T Consensus 248 -------------------------k~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~ 302 (691)
T KOG0338|consen 248 -------------------------KKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSR 302 (691)
T ss_pred -------------------------ccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhC
Confidence 2345568999999999999999999999999999999999999999999999999
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
|||+|+|||||.|+|.+... ..+.++.+||+||||+|++.||..++..|+..+ +.++|++||||||+..+..+
T Consensus 303 PDIVIATPGRlIDHlrNs~s--f~ldsiEVLvlDEADRMLeegFademnEii~lc-----pk~RQTmLFSATMteeVkdL 375 (691)
T KOG0338|consen 303 PDIVIATPGRLIDHLRNSPS--FNLDSIEVLVLDEADRMLEEGFADEMNEIIRLC-----PKNRQTMLFSATMTEEVKDL 375 (691)
T ss_pred CCEEEecchhHHHHhccCCC--ccccceeEEEechHHHHHHHHHHHHHHHHHHhc-----cccccceeehhhhHHHHHHH
Confidence 99999999999999986542 357789999999999999999999999999988 58899999999999888876
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEec---ccchhhHHHHHHHhC-CCcEEE
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK---HDEKDSYLYYFILQH-PGRTLV 1082 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~k~~~l~~~l~~~-~~~~IV 1082 (1493)
+.+ .+..|..+-+.+.......+.+-++... ...+...+..++... ..++||
T Consensus 376 ~sl------------------------SL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~iv 431 (691)
T KOG0338|consen 376 ASL------------------------SLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIV 431 (691)
T ss_pred HHh------------------------hcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEE
Confidence 643 3445555555555555555655555333 234555555555543 678999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHH
Q psy16310 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yi 1162 (1493)
|+.|++.|+++.-+|-.+|+.+.-+||.++|.+|...++.|+.++++||||||+++|||||++|.+||||++|.+++.|+
T Consensus 432 Fv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~ 511 (691)
T KOG0338|consen 432 FVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYL 511 (691)
T ss_pred EEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhc
Q psy16310 1163 HRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196 (1493)
Q Consensus 1163 qr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~ 1196 (1493)
||+|||+|+|+.|.+++|+..+|...++.+.+..
T Consensus 512 HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 512 HRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred HHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 9999999999999999999999999999998874
|
|
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=588.35 Aligned_cols=403 Identities=50% Similarity=0.796 Sum_probs=340.3
Q ss_pred ccccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccC
Q psy16310 147 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 226 (1493)
Q Consensus 147 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~ 226 (1493)
...++.|..|+|+..++++|..+||.+||+||+.+||.++.+..||+..|.|||||||||.+|+++.+........
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~---- 252 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQ---- 252 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHh----
Confidence 3457789999999999999999999999999999999999877999999999999999999999997754221110
Q ss_pred CCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHh
Q psy16310 227 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 306 (1493)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l 306 (1493)
.+++ .......+.+||++||||||.|+.+++..+...+++++..++||.....|.+.+
T Consensus 253 -----------e~~~-----------~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL 310 (731)
T KOG0347|consen 253 -----------ELSN-----------TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLL 310 (731)
T ss_pred -----------hhhh-----------HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHH
Confidence 0000 112233346999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
...++|+|+||||||.++..++..+..|.++.+||+||||+|++.|+++.+..+++.++...
T Consensus 311 ~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~------------------ 372 (731)
T KOG0347|consen 311 NQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQ------------------ 372 (731)
T ss_pred hcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhh------------------
Confidence 99999999999999999998888888899999999999999999999999999999987321
Q ss_pred hhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccch
Q psy16310 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 466 (1493)
Q Consensus 387 ~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1493)
....+|+++||||++-....-+....... ..
T Consensus 373 ----------~~~qrQTlVFSATlt~~~~~~~~~~~k~~-----------------------~k---------------- 403 (731)
T KOG0347|consen 373 ----------KNRQRQTLVFSATLTLVLQQPLSSSRKKK-----------------------DK---------------- 403 (731)
T ss_pred ----------cccccceEEEEEEeehhhcChhHHhhhcc-----------------------ch----------------
Confidence 24567999999999854332221100000 00
Q ss_pred hhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCc
Q psy16310 467 SKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 546 (1493)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~ 546 (1493)
.+ .....+...+..+-....|+++++.........+.+..+.|...+|..+|++||..+||+
T Consensus 404 ---------~~---------~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGr 465 (731)
T KOG0347|consen 404 ---------ED---------ELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGR 465 (731)
T ss_pred ---------hh---------hhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCc
Confidence 00 000001111222223445688888888888888999999999999999999999999999
Q ss_pred EEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChH
Q psy16310 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626 (1493)
Q Consensus 547 ~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~ 626 (1493)
+|||||+...+.+|+-+|+.+++..+.+|+.|.|.+|.+.+++|++....||||||||+||||||+|.|||||.+|.+..
T Consensus 466 TlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtse 545 (731)
T KOG0347|consen 466 TLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSE 545 (731)
T ss_pred eEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 627 IYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 627 ~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
-|+||.|||||++..|.+++|+.|.|+..+.++-
T Consensus 546 iYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ 579 (731)
T KOG0347|consen 546 IYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLC 579 (731)
T ss_pred eeEecccccccccCCCeEEEEeChHHhHHHHHHH
Confidence 9999999999999999999999999988777764
|
|
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-65 Score=595.31 Aligned_cols=364 Identities=33% Similarity=0.567 Sum_probs=322.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcch
Q psy16310 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848 (1493)
Q Consensus 769 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 848 (1493)
.|.+++|++.+..+|+..||+.|||||.++||. +..|+|+++.|.|||||||+|++|++.++.....
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~-~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~------------ 158 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPI-ALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQG------------ 158 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccce-eccCCceEEEeccCCcchhhhhhHHHHHHHhccc------------
Confidence 799999999999999999999999999999995 5588999999999999999999999999865211
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCc
Q psy16310 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928 (1493)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~ 928 (1493)
......++++|||+||||||.|+.+.+..++..+.+++.|++||.+...|.+.+.++++
T Consensus 159 ---------------------~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvd 217 (519)
T KOG0331|consen 159 ---------------------KLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVD 217 (519)
T ss_pred ---------------------cccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCc
Confidence 12345688999999999999999999999999999999999999999999999999999
Q ss_pred EEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHh
Q psy16310 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008 (1493)
Q Consensus 929 IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~ 1008 (1493)
|+|||||||.+++..+.. .|+++.++|+||||+|+++||.++++.|+..++ ++.+|++++|||+|.++..+..
T Consensus 218 iviaTPGRl~d~le~g~~---~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~----~~~rQtlm~saTwp~~v~~lA~ 290 (519)
T KOG0331|consen 218 VVIATPGRLIDLLEEGSL---NLSRVTYLVLDEADRMLDMGFEPQIRKILSQIP----RPDRQTLMFSATWPKEVRQLAE 290 (519)
T ss_pred EEEeCChHHHHHHHcCCc---cccceeEEEeccHHhhhccccHHHHHHHHHhcC----CCcccEEEEeeeccHHHHHHHH
Confidence 999999999999998875 456899999999999999999999999999985 3456999999999998877653
Q ss_pred hhccCcCcccccCCCchhHHHHhHhccCCCcEEeccc--cccccccceeeEEEecccchhhHHHHHHHhC----CCcEEE
Q psy16310 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE--KIGITKTLTESKILCKHDEKDSYLYYFILQH----PGRTLV 1082 (1493)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~----~~~~IV 1082 (1493)
.+.. ++..+.+.. .......+.+....|....|...+..+|... .+++||
T Consensus 291 ~fl~------------------------~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvII 346 (519)
T KOG0331|consen 291 DFLN------------------------NPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVII 346 (519)
T ss_pred HHhc------------------------CceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEE
Confidence 3221 333333332 2345566777777888888888888777654 679999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHH
Q psy16310 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yi 1162 (1493)
||+|+..|+.|+..|...++++..+||+++|.+|..+++.|++|+..|||||||++||||||+|++|||||+|.+.++|+
T Consensus 347 Fc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYV 426 (519)
T KOG0331|consen 347 FCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYV 426 (519)
T ss_pred EecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhcc
Q psy16310 1163 HRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE 1197 (1493)
Q Consensus 1163 qr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~ 1197 (1493)
||+|||||+|+.|.+++|++..+....+.+.+.+.
T Consensus 427 HRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~ 461 (519)
T KOG0331|consen 427 HRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLR 461 (519)
T ss_pred hhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887777766653
|
|
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=568.22 Aligned_cols=363 Identities=36% Similarity=0.563 Sum_probs=305.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|.+++|+..+++++..+||..|||||..+||.++. |+|++.||.||||||.+|+||+|.+++...
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvall-gkDIca~A~TGsGKTAAF~lPiLERLlYrP------------ 247 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALL-GKDICACAATGSGKTAAFALPILERLLYRP------------ 247 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhh-cchhhheecccCCchhhhHHHHHHHHhcCc------------
Confidence 4788999999999999999999999999999997774 689999999999999999999999987532
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~ 310 (1493)
......+||||+|||+|+.|++.+++.++++..+.+++.+||.+...|...|...|
T Consensus 248 ------------------------k~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~P 303 (691)
T KOG0338|consen 248 ------------------------KKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRP 303 (691)
T ss_pred ------------------------ccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCC
Confidence 22345689999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
||+|+|||||+++|.+... ..|.+|.+||+||||+||+.+|.+++..|+..+
T Consensus 304 DIVIATPGRlIDHlrNs~s--f~ldsiEVLvlDEADRMLeegFademnEii~lc-------------------------- 355 (691)
T KOG0338|consen 304 DIVIATPGRLIDHLRNSPS--FNLDSIEVLVLDEADRMLEEGFADEMNEIIRLC-------------------------- 355 (691)
T ss_pred CEEEecchhHHHHhccCCC--ccccceeEEEechHHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 9999999999999986542 236799999999999999999999999999877
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
+..+|+++|||||+..+..++++....+....+... ....+.+.+.++-
T Consensus 356 -------pk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~------------------------~~~a~~LtQEFiR 404 (691)
T KOG0338|consen 356 -------PKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPN------------------------KDTAPKLTQEFIR 404 (691)
T ss_pred -------cccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCc------------------------cccchhhhHHHhe
Confidence 566899999999999999888765544332222211 1111111111111
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHh-hCCCcEEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL-QHPGRTLV 549 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~~~~~II 549 (1493)
.+. . ....+..++..++. ....++||
T Consensus 405 IR~---------------~--------------------------------------re~dRea~l~~l~~rtf~~~~iv 431 (691)
T KOG0338|consen 405 IRP---------------K--------------------------------------REGDREAMLASLITRTFQDRTIV 431 (691)
T ss_pred ecc---------------c--------------------------------------cccccHHHHHHHHHHhcccceEE
Confidence 110 0 01112223333332 23568999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHH
Q psy16310 550 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629 (1493)
Q Consensus 550 F~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yi 629 (1493)
|+.|.+.|+++.-+|..+|+.++-+||.++|.+|...++.|+++++.||||||||+|||||++|..||||++|.+...|+
T Consensus 432 Fv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~ 511 (691)
T KOG0338|consen 432 FVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYL 511 (691)
T ss_pred EEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCeEEEEecCCcchhhhhhhhh
Q psy16310 630 HRSGRTARANNEGLTVVLIESDEIPLKTKFNLQ 662 (1493)
Q Consensus 630 QR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~ 662 (1493)
||+|||+|+|+.|++++|+..+|....+.+...
T Consensus 512 HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 512 HRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred HHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 999999999999999999999998877766444
|
|
| >KOG0340|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-64 Score=535.50 Aligned_cols=389 Identities=33% Similarity=0.559 Sum_probs=339.2
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCC
Q psy16310 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 845 (1493)
Q Consensus 766 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 845 (1493)
.+..|+.|||++|+.+.|+.+|++.|||+|..|||. +..|+|+|.+|.||||||++|.+|+++++.
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpk-ILeGrdcig~AkTGsGKT~AFaLPil~rLs------------- 70 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPK-ILEGRDCIGCAKTGSGKTAAFALPILNRLS------------- 70 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHH-HhcccccccccccCCCcchhhhHHHHHhhc-------------
Confidence 356799999999999999999999999999999995 558899999999999999999999999883
Q ss_pred cchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcC
Q psy16310 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925 (1493)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~ 925 (1493)
....+..++|++||||||.|+.+.|..+++..++++.+++||++.-.|...|..
T Consensus 71 --------------------------edP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~ 124 (442)
T KOG0340|consen 71 --------------------------EDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSD 124 (442)
T ss_pred --------------------------cCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhccc
Confidence 345677899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEECcHHHHHHHHhC-cCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 926 CPHILVATPGRLWEFIQLG-HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~-~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
.|||+|+||||+.+++..+ ......+.+++++|+||||+|++..|...+..+.+.+ |.++|+++||||+++.+.
T Consensus 125 rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~l-----P~~RQtLlfSATitd~i~ 199 (442)
T KOG0340|consen 125 RPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECL-----PKPRQTLLFSATITDTIK 199 (442)
T ss_pred CCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccC-----CCccceEEEEeehhhHHH
Confidence 9999999999999999765 3333457789999999999999999999999999887 467999999999997776
Q ss_pred hHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC----CCcE
Q psy16310 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH----PGRT 1080 (1493)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~----~~~~ 1080 (1493)
....... ...............++..+.+.|+.|+...+..+++..+... .+.+
T Consensus 200 ql~~~~i----------------------~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~si 257 (442)
T KOG0340|consen 200 QLFGCPI----------------------TKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSI 257 (442)
T ss_pred HhhcCCc----------------------ccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceE
Confidence 5431100 0001223344455677889999999999999999999998754 5689
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhH
Q psy16310 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 1160 (1493)
Q Consensus 1081 IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~ 1160 (1493)
+||+|+...|+.|+..|+.+++.+..+||.|+|++|...+.+|+++..+|||||||++||+|||.|++|||||+|+++.+
T Consensus 258 mIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~ 337 (442)
T KOG0340|consen 258 MIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKD 337 (442)
T ss_pred EEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHH
Q psy16310 1161 YIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223 (1493)
Q Consensus 1161 yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~ 1223 (1493)
|+||+||++|+|+.|.++.|+++.|+..+..++..++++. .+++........+-..+..++
T Consensus 338 yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl--~e~~~~~~~~~~~~t~V~~ak 398 (442)
T KOG0340|consen 338 YIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKL--TEYNKVQRTVELYVTQVTVAK 398 (442)
T ss_pred HHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccc--ccccccchhhheehhhHHHHH
Confidence 9999999999999999999999999999999999998864 345555443333333344444
|
|
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-63 Score=548.98 Aligned_cols=383 Identities=32% Similarity=0.469 Sum_probs=334.3
Q ss_pred hhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCccc
Q psy16310 764 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 843 (1493)
Q Consensus 764 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~ 843 (1493)
......|+++.|++..+++++++||+++|++|+.+||. +..|+|+++.|.||||||+||++|+++.+.....
T Consensus 78 ~~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~p-ll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~------- 149 (543)
T KOG0342|consen 78 ITTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPP-LLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKF------- 149 (543)
T ss_pred hhhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCc-cCCCccceeeeccCCCceeeehhHHHHHHHhccc-------
Confidence 34445688999999999999999999999999999995 5578899999999999999999999999976542
Q ss_pred CCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCHHHHHHH
Q psy16310 844 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRI 922 (1493)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~ 922 (1493)
....+..+||||||||||.|++.+++.+.++. .+.+..+.||.........
T Consensus 150 ----------------------------~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~k 201 (543)
T KOG0342|consen 150 ----------------------------KPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADK 201 (543)
T ss_pred ----------------------------CCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHH
Confidence 23467889999999999999999999999998 8999999999998888888
Q ss_pred hcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 923 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 923 l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
+.++++|+|+|||||.|++++... ..+..++++|+||||+++++||..++..|+..+ +..+|+++||||++..
T Consensus 202 l~k~~niliATPGRLlDHlqNt~~--f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~l-----pk~rqt~LFSAT~~~k 274 (543)
T KOG0342|consen 202 LVKGCNILIATPGRLLDHLQNTSG--FLFRNLKCLVLDEADRLLDIGFEEDVEQIIKIL-----PKQRQTLLFSATQPSK 274 (543)
T ss_pred hhccccEEEeCCchHHhHhhcCCc--chhhccceeEeecchhhhhcccHHHHHHHHHhc-----cccceeeEeeCCCcHH
Confidence 888999999999999999987554 235567999999999999999999999999998 4789999999999988
Q ss_pred hHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEecc--ccccccccceeeEEEecccchhhHHHHHHHhCC--C
Q psy16310 1003 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT--EKIGITKTLTESKILCKHDEKDSYLYYFILQHP--G 1078 (1493)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~--~ 1078 (1493)
+.+....... ..+..++.. ....+...+.+.++.++...+...++.++.++. .
T Consensus 275 V~~l~~~~L~-----------------------~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~ 331 (543)
T KOG0342|consen 275 VKDLARGALK-----------------------RDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRY 331 (543)
T ss_pred HHHHHHHhhc-----------------------CCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCc
Confidence 8776533211 134444433 234567789999999999999999999998773 6
Q ss_pred cEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCCh
Q psy16310 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 1158 (1493)
Q Consensus 1079 ~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~ 1158 (1493)
++||||+|+..+..+++.|+...++|..+||+++|..|..+..+|++.+..|||||||+|||+|+|+|++||+||+|.++
T Consensus 332 KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~ 411 (543)
T KOG0342|consen 332 KIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDP 411 (543)
T ss_pred eEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHH
Q psy16310 1159 EIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1217 (1493)
Q Consensus 1159 ~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~ 1217 (1493)
++||||+|||||.|+.|.+++|+.|.|..+++.+. ++.+..++..+.-...++.
T Consensus 412 ~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK-----~lpl~~~e~~~~~~~~v~~ 465 (543)
T KOG0342|consen 412 EQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK-----KLPLEEFEFPPLKPEDVQS 465 (543)
T ss_pred HHHHHHhccccccCCCceEEEEeChhHHHHHHHHh-----hCCCcccCCCCCCHHHHHH
Confidence 99999999999999999999999999999888775 4455555555544455543
|
|
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-63 Score=574.14 Aligned_cols=362 Identities=33% Similarity=0.568 Sum_probs=307.4
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccc
Q psy16310 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 231 (1493)
.|.+++|++.+..+|+..||+.|||||.++||. +..|+|+++.|.|||||||+|+||++.++.....
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~-~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~------------ 158 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPI-ALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQG------------ 158 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccce-eccCCceEEEeccCCcchhhhhhHHHHHHHhccc------------
Confidence 688999999999999999999999999999994 5588999999999999999999999999975311
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCC
Q psy16310 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311 (1493)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~ 311 (1493)
.....++|++|||+||||||.|+...+..++..++++..|++||.+...|...+..+++
T Consensus 159 ---------------------~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvd 217 (519)
T KOG0331|consen 159 ---------------------KLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVD 217 (519)
T ss_pred ---------------------cccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCc
Confidence 12235678999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1493)
|+|+|||||.++|+.+... |+++.++|+||||+|++++|.++++.|+..++
T Consensus 218 iviaTPGRl~d~le~g~~~---l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~-------------------------- 268 (519)
T KOG0331|consen 218 VVIATPGRLIDLLEEGSLN---LSRVTYLVLDEADRMLDMGFEPQIRKILSQIP-------------------------- 268 (519)
T ss_pred EEEeCChHHHHHHHcCCcc---ccceeEEEeccHHhhhccccHHHHHHHHHhcC--------------------------
Confidence 9999999999999988775 45899999999999999999999999999884
Q ss_pred ccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhh
Q psy16310 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 471 (1493)
Q Consensus 392 ~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1493)
++.+|++++|||+|..+..+..-... .+..+++....
T Consensus 269 ------~~~rQtlm~saTwp~~v~~lA~~fl~------------------------~~~~i~ig~~~------------- 305 (519)
T KOG0331|consen 269 ------RPDRQTLMFSATWPKEVRQLAEDFLN------------------------NPIQINVGNKK------------- 305 (519)
T ss_pred ------CCcccEEEEeeeccHHHHHHHHHHhc------------------------CceEEEecchh-------------
Confidence 23359999999999988776532111 11111100000
Q ss_pred ccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC----CCcE
Q psy16310 472 KHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH----PGRT 547 (1493)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~----~~~~ 547 (1493)
.......+.+....|+...|...|..+|... ++++
T Consensus 306 -----------------------------------------~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~Kv 344 (519)
T KOG0331|consen 306 -----------------------------------------ELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKV 344 (519)
T ss_pred -----------------------------------------hhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcE
Confidence 0001112233334555556666666666544 5799
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||||+|+..|..|+..|...++++..+||+.+|.+|..+++.|++|+..||||||||+||||||+|++|||||+|.++++
T Consensus 345 IIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEd 424 (519)
T KOG0331|consen 345 IIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVED 424 (519)
T ss_pred EEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|+||+|||||+|..|.+++|++..+......+.
T Consensus 425 YVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~ 457 (519)
T KOG0331|consen 425 YVHRIGRTGRAGKKGTAITFFTSDNAKLARELI 457 (519)
T ss_pred HHhhcCccccCCCCceEEEEEeHHHHHHHHHHH
Confidence 999999999999999999999999988766653
|
|
| >KOG0343|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-62 Score=545.42 Aligned_cols=384 Identities=33% Similarity=0.534 Sum_probs=335.8
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCC
Q psy16310 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 845 (1493)
Q Consensus 766 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 845 (1493)
.+..|++|+|+...+++|++.+|..||.+|..+||.+| .|+||++.|.|||||||||++|++++|+..++.+
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL-~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~------- 138 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMAL-QGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP------- 138 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhc-cCcccccccccCCCceeeehHHHHHHHHHcCCCC-------
Confidence 34579999999999999999999999999999999777 7899999999999999999999999998876533
Q ss_pred cchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcC
Q psy16310 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925 (1493)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~ 925 (1493)
..|.-||||+||||||.|++.++.+.+++..+..+++.||.........+.
T Consensus 139 ----------------------------~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~- 189 (758)
T KOG0343|consen 139 ----------------------------TDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS- 189 (758)
T ss_pred ----------------------------CCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-
Confidence 456679999999999999999999999999999999999998776655554
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHh
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
+.+|+|||||||+.+|..... ....++.+||+||||+|+++||...+..|+..+ |..+|+++||||.+..+..
T Consensus 190 ~mNILVCTPGRLLQHmde~~~--f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~l-----P~~RQTLLFSATqt~svkd 262 (758)
T KOG0343|consen 190 QMNILVCTPGRLLQHMDENPN--FSTSNLQMLVLDEADRMLDMGFKKTLNAIIENL-----PKKRQTLLFSATQTKSVKD 262 (758)
T ss_pred cCCeEEechHHHHHHhhhcCC--CCCCcceEEEeccHHHHHHHhHHHHHHHHHHhC-----ChhheeeeeecccchhHHH
Confidence 469999999999999986543 234578999999999999999999999999999 5889999999999988876
Q ss_pred HHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccc--cccccccceeeEEEecccchhhHHHHHHHhC-CCcEEE
Q psy16310 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE--KIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLV 1082 (1493)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IV 1082 (1493)
++. +.+.+|.++.+.. ...++.++.++|+.++..+|+.+|..|+..+ ..++||
T Consensus 263 LaR------------------------LsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iV 318 (758)
T KOG0343|consen 263 LAR------------------------LSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIV 318 (758)
T ss_pred HHH------------------------hhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEE
Confidence 653 4566777777663 3578889999999999999999999999988 568999
Q ss_pred EecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhH
Q psy16310 1083 FCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 1160 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~--~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~ 1160 (1493)
|+.|++.+..+++.|..+ |+++..+||.|+|..|..++.+|-.....||+|||+++||+|+|.|+|||++|+|.++++
T Consensus 319 F~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~t 398 (758)
T KOG0343|consen 319 FLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDT 398 (758)
T ss_pred EEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHH
Confidence 999999999999999887 788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHH
Q psy16310 1161 YIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1219 (1493)
Q Consensus 1161 yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~ 1219 (1493)
||||+||++|.+..|.++++++|+|...+...++.- .+++..+-+.+.-+..++..+
T Consensus 399 YIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k--~I~i~~i~i~~~k~~~i~~~l 455 (758)
T KOG0343|consen 399 YIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK--KIPIKEIKIDPEKLTSIRNKL 455 (758)
T ss_pred HHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc--CCCHHhhccCHHHhhhHHHHH
Confidence 999999999999999999999999955443333321 255555666665555555443
|
|
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-62 Score=543.64 Aligned_cols=379 Identities=31% Similarity=0.492 Sum_probs=337.6
Q ss_pred hhhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCc
Q psy16310 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 841 (1493)
Q Consensus 762 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~ 841 (1493)
..+.++.+|++.++|.++++.+...||..|||||.++|| +..+.+|+|+.|.||||||++|++|++..+.....-.
T Consensus 239 ~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aip-l~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~--- 314 (673)
T KOG0333|consen 239 RLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIP-LGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMA--- 314 (673)
T ss_pred CCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhcc-chhccCCeeeEEeccCCccccchhhHHHHHHcCCCcc---
Confidence 345678999999999999999999999999999999999 5557789999999999999999999998875421100
Q ss_pred ccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH
Q psy16310 842 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 921 (1493)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~ 921 (1493)
.......+++++||+|||+||+||...-.++++.+++++..++||.+.++|--
T Consensus 315 ---------------------------~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~f 367 (673)
T KOG0333|consen 315 ---------------------------RLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGF 367 (673)
T ss_pred ---------------------------hhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhh
Confidence 01134678899999999999999999999999999999999999999999988
Q ss_pred HhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCC-------------
Q psy16310 922 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ------------- 988 (1493)
Q Consensus 922 ~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~------------- 988 (1493)
.+..+|+|+|+|||+|.+.|.+..+ -+.++.++|+||||+|+++||.+++..++..++.....+
T Consensus 368 qls~gceiviatPgrLid~Lenr~l---vl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~ 444 (673)
T KOG0333|consen 368 QLSMGCEIVIATPGRLIDSLENRYL---VLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRK 444 (673)
T ss_pred hhhccceeeecCchHHHHHHHHHHH---HhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHh
Confidence 8899999999999999999987654 356889999999999999999999999999997643221
Q ss_pred -------CceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEec
Q psy16310 989 -------PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 1061 (1493)
Q Consensus 989 -------~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1061 (1493)
-+|+++||||+|+.+...+.. ++..|..+.+.........+.+..+.+.
T Consensus 445 ~~~~~k~yrqT~mftatm~p~verlar~------------------------ylr~pv~vtig~~gk~~~rveQ~v~m~~ 500 (673)
T KOG0333|consen 445 NFSSSKKYRQTVMFTATMPPAVERLARS------------------------YLRRPVVVTIGSAGKPTPRVEQKVEMVS 500 (673)
T ss_pred hcccccceeEEEEEecCCChHHHHHHHH------------------------HhhCCeEEEeccCCCCccchheEEEEec
Confidence 289999999999888766532 3556777777777777788899999999
Q ss_pred ccchhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhcc
Q psy16310 1062 HDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140 (1493)
Q Consensus 1062 ~~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~G 1140 (1493)
.+++...|..++... ..++|||+|+++.|+.||..|...|+.+..|||+-+|.+|+.++..|+.|..+|||||||++||
T Consensus 501 ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRG 580 (673)
T KOG0333|consen 501 EDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRG 580 (673)
T ss_pred chHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccC
Confidence 999999999999877 7799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccc
Q psy16310 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198 (1493)
Q Consensus 1141 iDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~ 1198 (1493)
||||+|.+|||||++.++++|+||||||||+|+.|.+++|+++.+...|+.+...+..
T Consensus 581 IDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~e 638 (673)
T KOG0333|consen 581 IDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRE 638 (673)
T ss_pred CCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888777666543
|
|
| >KOG0345|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-61 Score=531.24 Aligned_cols=357 Identities=34% Similarity=0.544 Sum_probs=313.4
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 769 EWVKFN--IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 769 ~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
.|++++ |++++++++..+||..+||+|..+|| .+..++|+++.|+||||||+||++|++..++.......
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIP-lll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~------- 76 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIP-LLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP------- 76 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhH-HHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC-------
Confidence 466665 55999999999999999999999999 56688999999999999999999999999865432111
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCC-CCcEEEEEEcCCCHHHHHHHhc-
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY-TPVKVACVVGGMSTEKQLRILN- 924 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~-~~~~v~~~~gg~~~~~~~~~l~- 924 (1493)
.....+|||+||||||.||.+++..+..+ .++++.+++||.+.......+.
T Consensus 77 ---------------------------~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fke 129 (567)
T KOG0345|consen 77 ---------------------------PGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKE 129 (567)
T ss_pred ---------------------------ccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHH
Confidence 11357999999999999999999998877 6799999999999888776554
Q ss_pred CCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 925 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 925 ~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
.++.|+|||||||.+++++....++ +.++.+||+||||+++++||...+..|+..| |..|.+-+||||....+.
T Consensus 130 e~~nIlVgTPGRL~di~~~~~~~l~-~rsLe~LVLDEADrLldmgFe~~~n~ILs~L-----PKQRRTGLFSATq~~~v~ 203 (567)
T KOG0345|consen 130 EGPNILVGTPGRLLDILQREAEKLS-FRSLEILVLDEADRLLDMGFEASVNTILSFL-----PKQRRTGLFSATQTQEVE 203 (567)
T ss_pred hCCcEEEeCchhHHHHHhchhhhcc-ccccceEEecchHhHhcccHHHHHHHHHHhc-----ccccccccccchhhHHHH
Confidence 5889999999999999987554333 6789999999999999999999999999999 578999999999998877
Q ss_pred hHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEecccccc--ccccceeeEEEecccchhhHHHHHHHhC-CCcEE
Q psy16310 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIG--ITKTLTESKILCKHDEKDSYLYYFILQH-PGRTL 1081 (1493)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~I 1081 (1493)
++.. .++.+|..+.+..... .+..+...|..|..+.|...++.++..+ .+++|
T Consensus 204 dL~r------------------------aGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~i 259 (567)
T KOG0345|consen 204 DLAR------------------------AGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCI 259 (567)
T ss_pred HHHH------------------------hhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEE
Confidence 6542 3566777776665544 6777888999999999999999999876 67999
Q ss_pred EEecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChh
Q psy16310 1082 VFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159 (1493)
Q Consensus 1082 VF~~s~~~~~~l~~~L~~~--~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~ 1159 (1493)
||++|+.+++..+..|..+ ...+..+||.|.+.+|..+++.|+.....||+||||++||||||+|++||+||+|.++.
T Consensus 260 VFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~ 339 (567)
T KOG0345|consen 260 VFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPS 339 (567)
T ss_pred EEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChh
Confidence 9999999999999999876 56788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCeEEEEecCCCHHHHH
Q psy16310 1160 IYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190 (1493)
Q Consensus 1160 ~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~ 1190 (1493)
+|+||+|||||+|+.|.|++|+.|.|..+..
T Consensus 340 ~FvHR~GRTaR~gr~G~Aivfl~p~E~aYve 370 (567)
T KOG0345|consen 340 SFVHRCGRTARAGREGNAIVFLNPREEAYVE 370 (567)
T ss_pred HHHhhcchhhhccCccceEEEecccHHHHHH
Confidence 9999999999999999999999997665443
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-61 Score=593.02 Aligned_cols=363 Identities=35% Similarity=0.597 Sum_probs=322.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
..|+++++++.++++|.+.||..|||||.++||.++ .|+|++++|+||||||+||++|+++.+....
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l-~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~------------ 95 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLIL-AGRDVLGQAQTGTGKTAAFLLPLLQKILKSV------------ 95 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhccc------------
Confidence 569999999999999999999999999999999555 7799999999999999999999999974210
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
.....+ +|||+||||||.|+++.+..++.+. ++++.+++||.+...|...+..+
T Consensus 96 ------------------------~~~~~~-aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~ 150 (513)
T COG0513 96 ------------------------ERKYVS-ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRG 150 (513)
T ss_pred ------------------------ccCCCc-eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcC
Confidence 001111 9999999999999999999999998 79999999999999999999989
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
+||||||||||++++..+.+ .+.++.++|+||||+|+++||.+++..|+..++ ..+|+++||||+|..+..+
T Consensus 151 ~~ivVaTPGRllD~i~~~~l---~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p-----~~~qtllfSAT~~~~i~~l 222 (513)
T COG0513 151 VDIVVATPGRLLDLIKRGKL---DLSGVETLVLDEADRMLDMGFIDDIEKILKALP-----PDRQTLLFSATMPDDIREL 222 (513)
T ss_pred CCEEEECccHHHHHHHcCCc---chhhcCEEEeccHhhhhcCCCHHHHHHHHHhCC-----cccEEEEEecCCCHHHHHH
Confidence 99999999999999998753 466899999999999999999999999999984 5899999999999866554
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEecccccc--ccccceeeEEEecccc-hhhHHHHHHHhC-CCcEEE
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIG--ITKTLTESKILCKHDE-KDSYLYYFILQH-PGRTLV 1082 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-k~~~l~~~l~~~-~~~~IV 1082 (1493)
... .+.+|..+.+..... ....+.+.++.+.... |...|..++... ..++||
T Consensus 223 ~~~------------------------~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IV 278 (513)
T COG0513 223 ARR------------------------YLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIV 278 (513)
T ss_pred HHH------------------------HccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 422 123455555553333 6788999999998876 999988888765 456999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHH
Q psy16310 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yi 1162 (1493)
||+|+..|+.|+..|...|+.+..+||+|+|.+|.++++.|++|+.+|||||||++||||||+|++|||||+|.+.+.|+
T Consensus 279 F~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yv 358 (513)
T COG0513 279 FVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYV 358 (513)
T ss_pred EeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCeEEEEecCC-CHHHHHHHHHhccccC
Q psy16310 1163 HRSGRTARANNEGLTLVLIESD-EIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1163 qr~GR~gR~g~~G~~i~l~~~~-e~~~~~~~~~~~~~~~ 1200 (1493)
||+|||||+|+.|.+++|+++. |...+..+.+.+....
T Consensus 359 HRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~ 397 (513)
T COG0513 359 HRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKL 397 (513)
T ss_pred eccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999986 8899999988877653
|
|
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-61 Score=497.23 Aligned_cols=370 Identities=27% Similarity=0.498 Sum_probs=323.7
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccC
Q psy16310 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 844 (1493)
Q Consensus 765 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~ 844 (1493)
....+|+++||.+.+++++++.||++|+.+|+.|||.++ .|+|++++|..|+|||.+|.+.+++.+.
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~Il-kGrdViaQaqSGTGKTa~~si~vlq~~d------------ 90 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQIL-KGRDVIAQAQSGTGKTATFSISVLQSLD------------ 90 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhh-cccceEEEecCCCCceEEEEeeeeeecc------------
Confidence 345689999999999999999999999999999999655 7899999999999999999999887652
Q ss_pred CcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc
Q psy16310 845 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 924 (1493)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~ 924 (1493)
...+..++|||+||||||.|+.+.+..++.++++.+..+.||.+..+..+.+.
T Consensus 91 ---------------------------~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld 143 (400)
T KOG0328|consen 91 ---------------------------ISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLD 143 (400)
T ss_pred ---------------------------cccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhc
Confidence 22445689999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 925 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 925 ~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
.+.+++.|||||+.++++++.+. -..+++||+||||.|++.||..++..+...+ |+..|++++|||+|.++.
T Consensus 144 ~G~hvVsGtPGrv~dmikr~~L~---tr~vkmlVLDEaDemL~kgfk~Qiydiyr~l-----p~~~Qvv~~SATlp~eil 215 (400)
T KOG0328|consen 144 YGQHVVSGTPGRVLDMIKRRSLR---TRAVKMLVLDEADEMLNKGFKEQIYDIYRYL-----PPGAQVVLVSATLPHEIL 215 (400)
T ss_pred ccceEeeCCCchHHHHHHhcccc---ccceeEEEeccHHHHHHhhHHHHHHHHHHhC-----CCCceEEEEeccCcHHHH
Confidence 99999999999999999988754 4478999999999999999999999999998 588999999999998877
Q ss_pred hHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccc-hhhHHHHHHHhC-CCcEEE
Q psy16310 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE-KDSYLYYFILQH-PGRTLV 1082 (1493)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~-~~~~IV 1082 (1493)
+....+ ..+|..+-..........+.++++.+..++ |...|.++-... -.+++|
T Consensus 216 emt~kf------------------------mtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavI 271 (400)
T KOG0328|consen 216 EMTEKF------------------------MTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVI 271 (400)
T ss_pred HHHHHh------------------------cCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEE
Confidence 654322 234444444444455666778877776665 666666554322 468999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHH
Q psy16310 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yi 1162 (1493)
||||+..+++|.+.|+..++.+..+||+|+|++|..++..|++|+.+||++|||.+||+|+|.|++|||||+|.+.+.|+
T Consensus 272 FcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YI 351 (400)
T KOG0328|consen 272 FCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYI 351 (400)
T ss_pred EecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCC
Q psy16310 1163 HRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID 1208 (1493)
Q Consensus 1163 qr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~ 1208 (1493)
||+||.||.|+.|.++-|+...|...++.+.+.+.-.+ ..+|+.
T Consensus 352 HRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i--~emp~n 395 (400)
T KOG0328|consen 352 HRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQI--DEMPMN 395 (400)
T ss_pred hhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhc--ccccch
Confidence 99999999999999999999999999999988876543 344443
|
|
| >KOG0340|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-61 Score=513.95 Aligned_cols=360 Identities=34% Similarity=0.578 Sum_probs=315.1
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
...|+.|||++|+.+.|..+|+..|||+|..||| .++.|+|+|.||.||||||.+|.||+++++..
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIp-kILeGrdcig~AkTGsGKT~AFaLPil~rLse------------- 71 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIP-KILEGRDCIGCAKTGSGKTAAFALPILNRLSE------------- 71 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhH-HHhcccccccccccCCCcchhhhHHHHHhhcc-------------
Confidence 4679999999999999999999999999999999 56689999999999999999999999998843
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
.+.+..++|++||||||.|+.+.|..+++..++++..++||++.-.+-..+...
T Consensus 72 --------------------------dP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~r 125 (442)
T KOG0340|consen 72 --------------------------DPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDR 125 (442)
T ss_pred --------------------------CCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccC
Confidence 245678999999999999999999999999999999999999999998999999
Q ss_pred CCEEEeCcHHHHHHHHcCCcc-ccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFH-LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~-~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
+||+|+|||+|.+++..+... ...+.++.++|+||||+|++..|.++++.+++.+
T Consensus 126 PHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~l------------------------ 181 (442)
T KOG0340|consen 126 PHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECL------------------------ 181 (442)
T ss_pred CCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccC------------------------
Confidence 999999999999999866322 2236689999999999999999999999998765
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
+.++|+++||||++..+..+...-... +
T Consensus 182 ---------P~~RQtLlfSATitd~i~ql~~~~i~k------------------------~------------------- 209 (442)
T KOG0340|consen 182 ---------PKPRQTLLFSATITDTIKQLFGCPITK------------------------S------------------- 209 (442)
T ss_pred ---------CCccceEEEEeehhhHHHHhhcCCccc------------------------c-------------------
Confidence 556899999999998766543210000 0
Q ss_pred hhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC----C
Q psy16310 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH----P 544 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~----~ 544 (1493)
+ .+..+.....+....+...++.|+.+.+..+|++.|... .
T Consensus 210 -----------~------------------------a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~ 254 (442)
T KOG0340|consen 210 -----------I------------------------AFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKEN 254 (442)
T ss_pred -----------c------------------------ceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccC
Confidence 0 001111223345566777889999999999999999765 4
Q ss_pred CcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCC
Q psy16310 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624 (1493)
Q Consensus 545 ~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s 624 (1493)
+.++||+++..+|+.|+..|+.+.+.+..+||.|+|.+|...+.+|+++..+||||||||+||+|||.|++|||||+|.+
T Consensus 255 ~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~ 334 (442)
T KOG0340|consen 255 GSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRD 334 (442)
T ss_pred ceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 625 SEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 625 ~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
+.+||||+|||+|+|+.|.++.|+++.|+.....++
T Consensus 335 P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE 370 (442)
T KOG0340|consen 335 PKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIE 370 (442)
T ss_pred HHHHHHhhcchhcccCCcceEEEechhhHHHHHHHH
Confidence 999999999999999999999999999998877764
|
|
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-60 Score=527.61 Aligned_cols=362 Identities=32% Similarity=0.493 Sum_probs=316.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
..|+++.|++..++++.++||..+|++|+.+|| .++.|+|+++.|.||||||++|+||+++.+++....
T Consensus 82 ~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~-pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~---------- 150 (543)
T KOG0342|consen 82 FRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIP-PLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFK---------- 150 (543)
T ss_pred hHhhccccCHHHHHHHHhcCccchhHHHHhhcC-ccCCCccceeeeccCCCceeeehhHHHHHHHhcccC----------
Confidence 457889999999999999999999999999999 455788999999999999999999999999874322
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
..++..+||++||||||.|++.+++++..+. ++.+..+.||+........+.++
T Consensus 151 -------------------------~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~ 205 (543)
T KOG0342|consen 151 -------------------------PRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKG 205 (543)
T ss_pred -------------------------CCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhcc
Confidence 2366789999999999999999999999988 89999999999999999999999
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
++|+|+|||||.++|++....+ +..+.++|+||||+++++||...+++|+..+
T Consensus 206 ~niliATPGRLlDHlqNt~~f~--~r~~k~lvlDEADrlLd~GF~~di~~Ii~~l------------------------- 258 (543)
T KOG0342|consen 206 CNILIATPGRLLDHLQNTSGFL--FRNLKCLVLDEADRLLDIGFEEDVEQIIKIL------------------------- 258 (543)
T ss_pred ccEEEeCCchHHhHhhcCCcch--hhccceeEeecchhhhhcccHHHHHHHHHhc-------------------------
Confidence 9999999999999999876533 3456899999999999999999999999887
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1493)
+..+|+++||||.|..+.++.+..... .+..++...
T Consensus 259 --------pk~rqt~LFSAT~~~kV~~l~~~~L~~-----------------------d~~~v~~~d------------- 294 (543)
T KOG0342|consen 259 --------PKQRQTLLFSATQPSKVKDLARGALKR-----------------------DPVFVNVDD------------- 294 (543)
T ss_pred --------cccceeeEeeCCCcHHHHHHHHHhhcC-----------------------CceEeecCC-------------
Confidence 445899999999999988877543321 011111000
Q ss_pred hhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCC--CcE
Q psy16310 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP--GRT 547 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~--~~~ 547 (1493)
.........+.+.++++..+.++.+++.+|.++- .++
T Consensus 295 -----------------------------------------~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~Ki 333 (543)
T KOG0342|consen 295 -----------------------------------------GGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKI 333 (543)
T ss_pred -----------------------------------------CCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceE
Confidence 0011122345667788888888899999998773 699
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||||+|+..+..++.+|+...++|..+||+++|..|+.++..|++.+.-|||||||+|||+|+|+|++||+||+|.++.+
T Consensus 334 iVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~ 413 (543)
T KOG0342|consen 334 IVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQ 413 (543)
T ss_pred EEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
||||+|||||.|..|.+++|+.|.|..+...+.
T Consensus 414 YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 414 YIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred HHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 999999999999999999999999999888875
|
|
| >KOG0326|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-60 Score=497.41 Aligned_cols=360 Identities=30% Similarity=0.519 Sum_probs=326.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
..|+++.|...|+..+.+.||+.|+|+|.++||.++ .|+|+++.|..|+|||.+|++|+++.+..
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaL-tGrdiLaRaKNGTGKT~a~~IP~Lekid~-------------- 149 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIAL-TGRDILARAKNGTGKTAAYCIPVLEKIDP-------------- 149 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceee-cchhhhhhccCCCCCccceechhhhhcCc--------------
Confidence 469999999999999999999999999999999655 88999999999999999999999988732
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~ 927 (1493)
.....+++|++||||||.|+.+.++.+++++++.+...+||++.....-.+...+
T Consensus 150 -------------------------~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~V 204 (459)
T KOG0326|consen 150 -------------------------KKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTV 204 (459)
T ss_pred -------------------------cccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCce
Confidence 3455789999999999999999999999999999999999999998888888899
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
+++|+||||+++++..+- ..++++.++|+||||.|++..|.+.+..++..+ |..+|++++|||+|-.+..+.
T Consensus 205 H~~vgTPGRIlDL~~KgV---a~ls~c~~lV~DEADKlLs~~F~~~~e~li~~l-----P~~rQillySATFP~tVk~Fm 276 (459)
T KOG0326|consen 205 HLVVGTPGRILDLAKKGV---ADLSDCVILVMDEADKLLSVDFQPIVEKLISFL-----PKERQILLYSATFPLTVKGFM 276 (459)
T ss_pred EEEEcCChhHHHHHhccc---ccchhceEEEechhhhhhchhhhhHHHHHHHhC-----CccceeeEEecccchhHHHHH
Confidence 999999999999998765 456789999999999999999999999999998 588999999999998887766
Q ss_pred hhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHh-CCCcEEEEecc
Q psy16310 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ-HPGRTLVFCNS 1086 (1493)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~IVF~~s 1086 (1493)
.. ++..|-.+.+.+.. ....+.++|..+....|...|..+... .-.+.||||||
T Consensus 277 ~~------------------------~l~kPy~INLM~eL-tl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS 331 (459)
T KOG0326|consen 277 DR------------------------HLKKPYEINLMEEL-TLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNS 331 (459)
T ss_pred HH------------------------hccCcceeehhhhh-hhcchhhheeeechhhhhhhHHHHHHHhcccceEEEecc
Confidence 32 24445555555443 456788899999999998888766544 35789999999
Q ss_pred hhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHh
Q psy16310 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 1166 (1493)
Q Consensus 1087 ~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~G 1166 (1493)
...++.||..+.++|+.++.+|+.|.|.+|.+++..|++|.++.|||||.+.||||+++|++|||||+|.+.++|+||+|
T Consensus 332 ~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIG 411 (459)
T KOG0326|consen 332 TNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIG 411 (459)
T ss_pred chHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1167 RTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1167 R~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
|.||.|..|.||.+++-.|...+.+++..++..+
T Consensus 412 RsGRFGhlGlAInLityedrf~L~~IE~eLGtEI 445 (459)
T KOG0326|consen 412 RSGRFGHLGLAINLITYEDRFNLYRIEQELGTEI 445 (459)
T ss_pred CCccCCCcceEEEEEehhhhhhHHHHHHHhcccc
Confidence 9999999999999999999999999999998754
|
|
| >KOG0343|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-60 Score=527.03 Aligned_cols=362 Identities=32% Similarity=0.517 Sum_probs=313.3
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 149 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
.+..|.+|+|+..++++|.+.+|..||.+|+.+||.+| .|+|||..|.|||||||+|++|+|++|+.....
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL-~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs-------- 137 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMAL-QGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWS-------- 137 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhc-cCcccccccccCCCceeeehHHHHHHHHHcCCC--------
Confidence 34579999999999999999999999999999999777 679999999999999999999999999875433
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcC
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
...|.-||||+||||||.|++.++.+.+++++++.+++.||.........+.
T Consensus 138 ---------------------------~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~- 189 (758)
T KOG0343|consen 138 ---------------------------PTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS- 189 (758)
T ss_pred ---------------------------CCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-
Confidence 3456779999999999999999999999999999999999998777766655
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
..+|+|||||||+.+|...... .-+++.+||+||||+|++|||...+..|+..+
T Consensus 190 ~mNILVCTPGRLLQHmde~~~f--~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~l------------------------ 243 (758)
T KOG0343|consen 190 QMNILVCTPGRLLQHMDENPNF--STSNLQMLVLDEADRMLDMGFKKTLNAIIENL------------------------ 243 (758)
T ss_pred cCCeEEechHHHHHHhhhcCCC--CCCcceEEEeccHHHHHHHhHHHHHHHHHHhC------------------------
Confidence 4699999999999999765321 23478999999999999999999999999988
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
++.+|+++||||.+..+..++++... .|.++.+.
T Consensus 244 ---------P~~RQTLLFSATqt~svkdLaRLsL~------------------------dP~~vsvh------------- 277 (758)
T KOG0343|consen 244 ---------PKKRQTLLFSATQTKSVKDLARLSLK------------------------DPVYVSVH------------- 277 (758)
T ss_pred ---------ChhheeeeeecccchhHHHHHHhhcC------------------------CCcEEEEe-------------
Confidence 56689999999999998887764331 12111110
Q ss_pred hhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcE
Q psy16310 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRT 547 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~ 547 (1493)
.....+.+..+.++++.+....|..+|..|+..+ ..++
T Consensus 278 -----------------------------------------e~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~ 316 (758)
T KOG0343|consen 278 -----------------------------------------ENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKS 316 (758)
T ss_pred -----------------------------------------ccccccChhhhhheEEEEehhhHHHHHHHHHHhccccce
Confidence 0111234566778888899999999999999888 4699
Q ss_pred EEEecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCCh
Q psy16310 548 LVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 625 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~ 625 (1493)
|||+.|++.+..+++.|+.+ |+++..+||.|+|..|..++..|-..+.-||+|||+++||||+|.|++||+||+|.++
T Consensus 317 iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv 396 (758)
T KOG0343|consen 317 IVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDV 396 (758)
T ss_pred EEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhH
Confidence 99999999999999999987 7888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCCCeEEEEecCCcc-hhhhhhh
Q psy16310 626 EIYIHRSGRTARANNEGLTVVLIESDEI-PLKTKFN 660 (1493)
Q Consensus 626 ~~yiQR~GRagR~g~~G~~i~l~~~~e~-~~~~~l~ 660 (1493)
.+||||+|||||.+..|.|+++++|+|. .+...++
T Consensus 397 ~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq 432 (758)
T KOG0343|consen 397 DTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQ 432 (758)
T ss_pred HHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHH
Confidence 9999999999999999999999999984 4444443
|
|
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-59 Score=517.07 Aligned_cols=392 Identities=30% Similarity=0.461 Sum_probs=321.5
Q ss_pred cccccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCcc
Q psy16310 146 MFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 225 (1493)
Q Consensus 146 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~ 225 (1493)
.+.++.+|++.+++..+++.+.+.||..|+|||..+|| ....++|+|..|.||||||++|++|++..|........
T Consensus 240 lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aip-l~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~--- 315 (673)
T KOG0333|consen 240 LPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIP-LGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMAR--- 315 (673)
T ss_pred CCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhcc-chhccCCeeeEEeccCCccccchhhHHHHHHcCCCcch---
Confidence 35678899999999999999999999999999999999 56678999999999999999999999988864321110
Q ss_pred CCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH
Q psy16310 226 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 305 (1493)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~ 305 (1493)
.-...-+|+++||+|||+||+||...-..++.++++++..++||.+..++--.
T Consensus 316 ---------------------------~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fq 368 (673)
T KOG0333|consen 316 ---------------------------LENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQ 368 (673)
T ss_pred ---------------------------hhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhh
Confidence 01223578999999999999999999999999999999999999999999888
Q ss_pred hcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchh
Q psy16310 306 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385 (1493)
Q Consensus 306 l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~ 385 (1493)
+..+|+|+|+|||+|.+.|.+..+- |.++.++|+||||+|+++||.+++..||..++........ ......
T Consensus 369 ls~gceiviatPgrLid~Lenr~lv---l~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~t------de~~~~ 439 (673)
T KOG0333|consen 369 LSMGCEIVIATPGRLIDSLENRYLV---LNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDT------DEKEGE 439 (673)
T ss_pred hhccceeeecCchHHHHHHHHHHHH---hccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCc------cchhhH
Confidence 8999999999999999999876654 4589999999999999999999999999998755322100 011112
Q ss_pred hhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccc
Q psy16310 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465 (1493)
Q Consensus 386 ~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1493)
.+++... .....-+|+++||||+|+.+..+++..... |.++
T Consensus 440 ~~~~~~~--~~~k~yrqT~mftatm~p~verlar~ylr~------------------------pv~v------------- 480 (673)
T KOG0333|consen 440 ERVRKNF--SSSKKYRQTVMFTATMPPAVERLARSYLRR------------------------PVVV------------- 480 (673)
T ss_pred HHHHhhc--ccccceeEEEEEecCCChHHHHHHHHHhhC------------------------CeEE-------------
Confidence 2222211 222355899999999999887766422211 1110
Q ss_pred hhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-C
Q psy16310 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-P 544 (1493)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~ 544 (1493)
...........+.+.......+.+...|..+|... .
T Consensus 481 -------------------------------------------tig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ 517 (673)
T KOG0333|consen 481 -------------------------------------------TIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFD 517 (673)
T ss_pred -------------------------------------------EeccCCCCccchheEEEEecchHHHHHHHHHHHhCCC
Confidence 00111111223344455566777888888888877 6
Q ss_pred CcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCC
Q psy16310 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624 (1493)
Q Consensus 545 ~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s 624 (1493)
.++|||+|+.+.|+.|++.|...|+.+..|||+-+|.+|..++..|+.|...|||||||++||||||+|.+|||||++.+
T Consensus 518 ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaks 597 (673)
T KOG0333|consen 518 PPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKS 597 (673)
T ss_pred CCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 625 SEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 625 ~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
..+|+||+|||||+|+.|.+++|+++.|...+..|
T Consensus 598 ieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydL 632 (673)
T KOG0333|consen 598 IEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDL 632 (673)
T ss_pred HHHHHHHhccccccccCceeEEEeccchhHHHHHH
Confidence 99999999999999999999999999997766555
|
|
| >KOG0345|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=510.80 Aligned_cols=363 Identities=33% Similarity=0.518 Sum_probs=305.8
Q ss_pred cccccC--CCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 152 EWVKFN--IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 152 ~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
.|++++ |+++++.++...||...||+|..+|| .+.+++||++.|+||||||+||++|++..++.......
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIP-lll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~------- 76 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIP-LLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP------- 76 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhH-HHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC-------
Confidence 466655 55999999999999999999999999 67789999999999999999999999999875322211
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCC-CCeEEEEEEcCCCHHHHHHHhc-
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY-TPVKVACVVGGMSTEKQLRILN- 307 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~-~~i~v~~~~G~~~~~~~~~~l~- 307 (1493)
.....+|||+||||||.||.+++..+..+ .++++.+++||.+.......+.
T Consensus 77 ---------------------------~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fke 129 (567)
T KOG0345|consen 77 ---------------------------PGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKE 129 (567)
T ss_pred ---------------------------ccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHH
Confidence 11357999999999999999999888776 6799999999998888877664
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
++++|+|||||||.+++++....++ +.++++||+||||+++++||..+++.|+..++
T Consensus 130 e~~nIlVgTPGRL~di~~~~~~~l~-~rsLe~LVLDEADrLldmgFe~~~n~ILs~LP---------------------- 186 (567)
T KOG0345|consen 130 EGPNILVGTPGRLLDILQREAEKLS-FRSLEILVLDEADRLLDMGFEASVNTILSFLP---------------------- 186 (567)
T ss_pred hCCcEEEeCchhHHHHHhchhhhcc-ccccceEEecchHhHhcccHHHHHHHHHHhcc----------------------
Confidence 5789999999999999987554443 66899999999999999999999999999884
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 467 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1493)
..+++-+||||.+..+.++......++ ..+.+.
T Consensus 187 -----------KQRRTGLFSATq~~~v~dL~raGLRNp------------------------v~V~V~------------ 219 (567)
T KOG0345|consen 187 -----------KQRRTGLFSATQTQEVEDLARAGLRNP------------------------VRVSVK------------ 219 (567)
T ss_pred -----------cccccccccchhhHHHHHHHHhhccCc------------------------eeeeec------------
Confidence 447899999999998877654222111 111000
Q ss_pred hhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCc
Q psy16310 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGR 546 (1493)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~ 546 (1493)
.......++.+...+..|..+.|...+.++|... ..+
T Consensus 220 ------------------------------------------~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK 257 (567)
T KOG0345|consen 220 ------------------------------------------EKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKK 257 (567)
T ss_pred ------------------------------------------ccccccCchhhcceeeEecHHHHHHHHHHHHhcccccc
Confidence 0001113455667788999999999999999886 479
Q ss_pred EEEEecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCC
Q psy16310 547 TLVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624 (1493)
Q Consensus 547 ~IIF~~s~~~a~~L~~~L~~~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s 624 (1493)
+|||++|+.+++.....|... ...+..+||.|++.+|.++++.|++....+|+||||++||||||+|++||+||+|.+
T Consensus 258 ~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~ 337 (567)
T KOG0345|consen 258 CIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKD 337 (567)
T ss_pred EEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCC
Confidence 999999999999999888765 678899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 625 SEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 625 ~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
+..|+||+|||||+|+.|.+++|+.+.|..+.+.+..
T Consensus 338 ~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i 374 (567)
T KOG0345|consen 338 PSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRI 374 (567)
T ss_pred hhHHHhhcchhhhccCccceEEEecccHHHHHHHHHh
Confidence 9999999999999999999999999988777666543
|
|
| >KOG0348|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=516.30 Aligned_cols=400 Identities=26% Similarity=0.413 Sum_probs=311.2
Q ss_pred cccccccccCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccC
Q psy16310 148 VQMAEWVKFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 226 (1493)
Q Consensus 148 ~~~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~ 226 (1493)
..-..|.++||++.+.+.|.. +++..||.+|+++|| .+.+|+|++|.++||||||++|++|++++|.......
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP-~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki----- 206 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIP-VLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKI----- 206 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchh-hhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccc-----
Confidence 344679999999999999965 599999999999999 5667999999999999999999999999997643221
Q ss_pred CCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCC-eEEEEEEcCCCHHHHHHH
Q psy16310 227 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRI 305 (1493)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~-i~v~~~~G~~~~~~~~~~ 305 (1493)
+...|+.|||||||||||.|+++++..+..++. +-.+.+.||...+.+...
T Consensus 207 ----------------------------~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKAR 258 (708)
T KOG0348|consen 207 ----------------------------QRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKAR 258 (708)
T ss_pred ----------------------------cccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHH
Confidence 235678999999999999999999999987655 556778899999999999
Q ss_pred hcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchh
Q psy16310 306 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385 (1493)
Q Consensus 306 l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~ 385 (1493)
+.+|++|+|+|||||+|+|.+... ..+++++||||||||++++.||...+..|++.+....... ..
T Consensus 259 LRKGiNILIgTPGRLvDHLknT~~--i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e--------~~---- 324 (708)
T KOG0348|consen 259 LRKGINILIGTPGRLVDHLKNTKS--IKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAE--------CK---- 324 (708)
T ss_pred HhcCceEEEcCchHHHHHHhccch--heeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchh--------cc----
Confidence 999999999999999999986542 2356899999999999999999999999999885421100 01
Q ss_pred hhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhh-hcccccc
Q psy16310 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK-IGITKTL 464 (1493)
Q Consensus 386 ~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 464 (1493)
....++..|.+++|||++..+..+..+....+ ..+.+... ....
T Consensus 325 --------~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDp------------------------v~I~ld~s~~~~~--- 369 (708)
T KOG0348|consen 325 --------DPKLPHQLQNMLLSATLTDGVNRLADLSLKDP------------------------VYISLDKSHSQLN--- 369 (708)
T ss_pred --------cccccHHHHhHhhhhhhHHHHHHHhhccccCc------------------------eeeeccchhhhcC---
Confidence 11124568999999999998877665433211 11110000 0000
Q ss_pred chhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-
Q psy16310 465 TESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH- 543 (1493)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~- 543 (1493)
+.. ..+.....+...+-.....++..+...+.+.....++-.|..+|...
T Consensus 370 -----------------------p~~------~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~ 420 (708)
T KOG0348|consen 370 -----------------------PKD------KAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKV 420 (708)
T ss_pred -----------------------cch------hhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHh
Confidence 000 00000000111111133455666666667777767776677766543
Q ss_pred ----CCcEEEEecchhhHHHHHHHHHhc----------------------CCCccccccCCCHHHHHHHHHHHhcCCCeE
Q psy16310 544 ----PGRTLVFCNSISSVKRLTQLLTML----------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSI 597 (1493)
Q Consensus 544 ----~~~~IIF~~s~~~a~~L~~~L~~~----------------------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~V 597 (1493)
..++|||+.+++.++..+.+|... +..++.+||+|+|++|+.+++.|+.....|
T Consensus 421 k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~V 500 (708)
T KOG0348|consen 421 KFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAV 500 (708)
T ss_pred hhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceE
Confidence 458999999999999998888542 355778999999999999999999999999
Q ss_pred EEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 598 LVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
|+||||++||||+|+|++||+||+|.++.+|+||+|||+|+|..|.+++|..|.|..+...+
T Consensus 501 LLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l 562 (708)
T KOG0348|consen 501 LLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYL 562 (708)
T ss_pred EEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998866555
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-58 Score=564.38 Aligned_cols=359 Identities=35% Similarity=0.589 Sum_probs=303.8
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
..|+++++++.+++++.++||..|||||..+||. +..|+|++++|+||||||++|+||+++++....
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~-~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~------------ 95 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPL-ILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV------------ 95 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhCCCCEEEECCCCChHHHHHHHHHHHHHhccc------------
Confidence 5689999999999999999999999999999995 457799999999999999999999999974310
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
.....+ +|||+||||||.|+++.+..++.+. ++++.+++||.+...+...+..+
T Consensus 96 ------------------------~~~~~~-aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~ 150 (513)
T COG0513 96 ------------------------ERKYVS-ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRG 150 (513)
T ss_pred ------------------------ccCCCc-eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcC
Confidence 001111 9999999999999999999999988 79999999999999999999989
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
+||||||||||++++..+.++ ++++.++|+||||+|+++||.+.+..|+..++
T Consensus 151 ~~ivVaTPGRllD~i~~~~l~---l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p------------------------ 203 (513)
T COG0513 151 VDIVVATPGRLLDLIKRGKLD---LSGVETLVLDEADRMLDMGFIDDIEKILKALP------------------------ 203 (513)
T ss_pred CCEEEECccHHHHHHHcCCcc---hhhcCEEEeccHhhhhcCCCHHHHHHHHHhCC------------------------
Confidence 999999999999999988554 55899999999999999999999999998873
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1493)
..+|+++||||+|..+..+.+.... .+..+.+.
T Consensus 204 ---------~~~qtllfSAT~~~~i~~l~~~~l~------------------------~p~~i~v~-------------- 236 (513)
T COG0513 204 ---------PDRQTLLFSATMPDDIRELARRYLN------------------------DPVEIEVS-------------- 236 (513)
T ss_pred ---------cccEEEEEecCCCHHHHHHHHHHcc------------------------CCcEEEEc--------------
Confidence 3589999999999876655432111 11000000
Q ss_pred hhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCc-hhhHHHHHHhhCC-CcE
Q psy16310 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE-KDSYLYYFILQHP-GRT 547 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~~-~~~ 547 (1493)
..........+.+.++.+.... |...|..++.... .++
T Consensus 237 ----------------------------------------~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~ 276 (513)
T COG0513 237 ----------------------------------------VEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRV 276 (513)
T ss_pred ----------------------------------------cccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeE
Confidence 0000012234455556666554 8899999888764 469
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||||+|+..|..|+..|...|+.+..+||+|+|.+|.++++.|++|+.+|||||||++||||||+|++|||||+|.++.+
T Consensus 277 IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~ 356 (513)
T COG0513 277 IVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPED 356 (513)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCC-cchhhhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESD-EIPLKTKFNL 661 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~-e~~~~~~l~~ 661 (1493)
|+||+|||||+|+.|.+++|+++. |...+..++.
T Consensus 357 yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~ 391 (513)
T COG0513 357 YVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEK 391 (513)
T ss_pred heeccCccccCCCCCeEEEEeCcHHHHHHHHHHHH
Confidence 999999999999999999999985 6666666644
|
|
| >KOG0348|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-58 Score=509.78 Aligned_cols=389 Identities=28% Similarity=0.423 Sum_probs=316.3
Q ss_pred cccccCCCCHHHHHHHHH-CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 768 AEWVKFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
..|..+||++.+...|.. ++|..||.+|.++||. +.+|+|++|.|+||||||++|++|+++.+.......
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~-lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki-------- 206 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPV-LLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKI-------- 206 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhh-hhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccc--------
Confidence 469999999999999975 7999999999999995 557999999999999999999999999987532211
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCC-cEEEEEEcCCCHHHHHHHhcC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNK 925 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~-~~v~~~~gg~~~~~~~~~l~~ 925 (1493)
....|+.+||||||||||.|+|+.+.++.+.+- +-.+.+.||.........|++
T Consensus 207 -------------------------~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRK 261 (708)
T KOG0348|consen 207 -------------------------QRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRK 261 (708)
T ss_pred -------------------------cccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhc
Confidence 246788999999999999999999999988765 445677899998888999999
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcc--------cCCCCCceEEEEec
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM--------TETSQPRQTFVFSA 997 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~--------~~~~~~~q~ll~SA 997 (1493)
|++|+|+|||||.|+|.+... ..+.++++|||||||++++.||..++..|+..+.. ...+..+|.+++||
T Consensus 262 GiNILIgTPGRLvDHLknT~~--i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSA 339 (708)
T KOG0348|consen 262 GINILIGTPGRLVDHLKNTKS--IKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSA 339 (708)
T ss_pred CceEEEcCchHHHHHHhccch--heeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhh
Confidence 999999999999999986432 34678999999999999999999999999998832 12334589999999
Q ss_pred ccccchHhHHhhhccCcCcccccCC----CchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHH
Q psy16310 998 TLTHSLKNSLNLKKGQSKSKKVSKG----DPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 1073 (1493)
Q Consensus 998 Tl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 1073 (1493)
|++..+..+.......+........ .+....+.. ...+..-+-.....++..+.+.+..++..-+.-.|..++
T Consensus 340 TLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~e---v~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L 416 (708)
T KOG0348|consen 340 TLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQE---VDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALL 416 (708)
T ss_pred hhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhh---cCCcccccccccccCcHHhhhceEecCCchhHHHHHHHH
Confidence 9998888776544443333221111 011111111 111111111134567888999999999998888888887
Q ss_pred HhC-----CCcEEEEecchhhHHHHHHHHHhc----------------------CCCccccccCCCHHHHHHHHHHHhcC
Q psy16310 1074 LQH-----PGRTLVFCNSISSVKRLTQLLTML----------------------KCSPLPLHASMNQRQRLKNLDRFRDQ 1126 (1493)
Q Consensus 1074 ~~~-----~~~~IVF~~s~~~~~~l~~~L~~~----------------------~~~~~~lhg~m~~~~R~~~~~~F~~g 1126 (1493)
... ..++|||+.+.+.++.-+.+|... +.+++-+||+|+|++|..+++.|...
T Consensus 417 ~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~ 496 (708)
T KOG0348|consen 417 LNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHS 496 (708)
T ss_pred HHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccc
Confidence 654 458999999999999999888643 34567799999999999999999999
Q ss_pred CCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHh
Q psy16310 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS 1195 (1493)
Q Consensus 1127 ~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~ 1195 (1493)
.-.||+||||++||+|+|+|.+||+||+|.+..+|+||+|||+|+|..|.+++|+.|.|..++..+...
T Consensus 497 ~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 497 RRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred cceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999866555443
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-56 Score=547.74 Aligned_cols=371 Identities=30% Similarity=0.477 Sum_probs=315.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
.+|++++|++.++++|...||..|||+|.+|||. +..|+|++++||||||||++|++|+++.++......
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~-il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~--------- 77 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPL-TLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE--------- 77 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccc---------
Confidence 4799999999999999999999999999999995 557899999999999999999999999886532100
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~ 927 (1493)
.....++++|||+||||||.|+++.+..++...++++..++||.....+...+..++
T Consensus 78 -----------------------~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~ 134 (423)
T PRK04837 78 -----------------------DRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGV 134 (423)
T ss_pred -----------------------ccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCC
Confidence 011345789999999999999999999999999999999999999988888888899
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
+|+|+||++|++++..+.. .+.++++|||||||+|++++|...+..++..++. ...+++++||||++..+....
T Consensus 135 ~IlV~TP~~l~~~l~~~~~---~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~---~~~~~~~l~SAT~~~~~~~~~ 208 (423)
T PRK04837 135 DILIGTTGRLIDYAKQNHI---NLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPP---ANQRLNMLFSATLSYRVRELA 208 (423)
T ss_pred CEEEECHHHHHHHHHcCCc---ccccccEEEEecHHHHhhcccHHHHHHHHHhCCC---ccceeEEEEeccCCHHHHHHH
Confidence 9999999999999987654 3668999999999999999999999999888742 245789999999997765543
Q ss_pred hhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CCcEEEEecc
Q psy16310 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNS 1086 (1493)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~s 1086 (1493)
... +..+..+.+.........+.+....+....+...+..++... ..++||||++
T Consensus 209 ~~~------------------------~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t 264 (423)
T PRK04837 209 FEH------------------------MNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANT 264 (423)
T ss_pred HHH------------------------CCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 211 122333333333333344555555556666777777776654 6789999999
Q ss_pred hhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHh
Q psy16310 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 1166 (1493)
Q Consensus 1087 ~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~G 1166 (1493)
+..|+.++..|...|+.+..+||+|++.+|..+++.|++|+++||||||+++||||+|+|++|||||+|.+.++|+||+|
T Consensus 265 ~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~G 344 (423)
T PRK04837 265 KHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIG 344 (423)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCC
Q psy16310 1167 RTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201 (1493)
Q Consensus 1167 R~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~ 1201 (1493)
||||+|+.|.|++|+++.+...+..+.+.+...+.
T Consensus 345 R~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~ 379 (423)
T PRK04837 345 RTGRAGASGHSISLACEEYALNLPAIETYIGHSIP 379 (423)
T ss_pred cccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999888888877766543
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-56 Score=552.58 Aligned_cols=361 Identities=32% Similarity=0.534 Sum_probs=314.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
.+|.+++|++.++++|.++||.+|||+|.++||. +..++|+|++||||||||++|++|+++.+..
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~-ll~g~dvl~~ApTGsGKT~af~lpll~~l~~-------------- 70 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPH-LLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP-------------- 70 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh--------------
Confidence 4699999999999999999999999999999995 5578999999999999999999999987632
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
...++++|||+||++||.|+++.+..+...+ ++.+..++||.+...+...+..+
T Consensus 71 -------------------------~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~ 125 (629)
T PRK11634 71 -------------------------ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 (629)
T ss_pred -------------------------ccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCC
Confidence 1234689999999999999999999987765 79999999999999998888889
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|||+||++|++++.++.+ .++++++|||||||+|++++|...+..++..+ +..+|+++||||+|..+...
T Consensus 126 ~~IVVgTPgrl~d~l~r~~l---~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~l-----p~~~q~llfSAT~p~~i~~i 197 (629)
T PRK11634 126 PQIVVGTPGRLLDHLKRGTL---DLSKLSGLVLDEADEMLRMGFIEDVETIMAQI-----PEGHQTALFSATMPEAIRRI 197 (629)
T ss_pred CCEEEECHHHHHHHHHcCCc---chhhceEEEeccHHHHhhcccHHHHHHHHHhC-----CCCCeEEEEEccCChhHHHH
Confidence 99999999999999987654 36689999999999999999999999999887 46789999999999776554
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CCcEEEEec
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCN 1085 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~ 1085 (1493)
.... +..+..+.+.........+.+.++.+....+...+..++... ..++||||+
T Consensus 198 ~~~~------------------------l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~ 253 (629)
T PRK11634 198 TRRF------------------------MKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVR 253 (629)
T ss_pred HHHH------------------------cCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEec
Confidence 3211 223333433333334445667777777777888887777654 568999999
Q ss_pred chhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHH
Q psy16310 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165 (1493)
Q Consensus 1086 s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~ 1165 (1493)
|+..+..++..|...|+.+..+||+|++.+|..++++|++|+++|||||+++++|||+|+|++|||||+|.+.++|+||+
T Consensus 254 tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRi 333 (629)
T PRK11634 254 TKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRI 333 (629)
T ss_pred cHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1166 GRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1166 GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
|||||+|+.|.|++|+.+.+...++.+.+.+...+
T Consensus 334 GRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i 368 (629)
T PRK11634 334 GRTGRAGRAGRALLFVENRERRLLRNIERTMKLTI 368 (629)
T ss_pred ccccCCCCcceEEEEechHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999888888887766554
|
|
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-57 Score=515.94 Aligned_cols=368 Identities=31% Similarity=0.483 Sum_probs=319.8
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccC
Q psy16310 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 844 (1493)
Q Consensus 765 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~ 844 (1493)
..+..|.+-.+.+.+...+...||..|||+|+.+|| ++.+|+|+++||+||||||.||++|++.+++.........
T Consensus 71 ~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip-~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~--- 146 (482)
T KOG0335|consen 71 PHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIP-IISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGE--- 146 (482)
T ss_pred CCcccccccchhHHHhhccccccccCCCcceeeccc-eeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcc---
Confidence 344578888899999999999999999999999999 7789999999999999999999999999997653211110
Q ss_pred CcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc
Q psy16310 845 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 924 (1493)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~ 924 (1493)
......+++|||+||||||.|++++.+++.....+++..++||.+...|.+.+.
T Consensus 147 --------------------------~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~ 200 (482)
T KOG0335|consen 147 --------------------------SGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIK 200 (482)
T ss_pred --------------------------cCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhc
Confidence 111246899999999999999999999999888999999999999999999999
Q ss_pred CCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhcc-CCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 925 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 925 ~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~-~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
+++||+|+|||+|.+++..+.+.+ .++++|||||||+|++ ++|.+++++|+..+.+.. ...+|+++||||+|..+
T Consensus 201 ~gcdIlvaTpGrL~d~~e~g~i~l---~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~-~~~~qt~mFSAtfp~~i 276 (482)
T KOG0335|consen 201 RGCDILVATPGRLKDLIERGKISL---DNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPP-KNNRQTLLFSATFPKEI 276 (482)
T ss_pred cCccEEEecCchhhhhhhcceeeh---hhCcEEEecchHHhhhhccccccHHHHhcccCCCC-ccceeEEEEeccCChhh
Confidence 999999999999999999888654 4678999999999999 999999999999886543 35799999999999877
Q ss_pred HhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-----CC
Q psy16310 1004 KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-----PG 1078 (1493)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-----~~ 1078 (1493)
...+..+. ......+.+.........+.+....+...+|...|+.++... .+
T Consensus 277 q~l~~~fl-----------------------~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~ 333 (482)
T KOG0335|consen 277 QRLAADFL-----------------------KDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDG 333 (482)
T ss_pred hhhHHHHh-----------------------hccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccC
Confidence 65432111 111334455555566788899999999999999999998743 22
Q ss_pred -----cEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEec
Q psy16310 1079 -----RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153 (1493)
Q Consensus 1079 -----~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d 1153 (1493)
+++|||.|++.|..|+..|...++++..+||+.+|.+|.+.++.|++|.+.|||||+|++||+|||+|+|||+||
T Consensus 334 ~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyD 413 (482)
T KOG0335|consen 334 EPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYD 413 (482)
T ss_pred CcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEee
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHH
Q psy16310 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLY 1189 (1493)
Q Consensus 1154 ~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~ 1189 (1493)
+|.+..+|+||||||||+|+.|.++.|++.......
T Consensus 414 mP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~ 449 (482)
T KOG0335|consen 414 MPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIA 449 (482)
T ss_pred cCcchhhHHHhccccccCCCCceeEEEeccccchhH
Confidence 999999999999999999999999999985544333
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-56 Score=555.07 Aligned_cols=370 Identities=29% Similarity=0.486 Sum_probs=314.1
Q ss_pred hhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcc
Q psy16310 763 MFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 842 (1493)
Q Consensus 763 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~ 842 (1493)
.+.++.+|+++++++.++++|.++||++|||+|.++||. +..|+|+|++||||||||++|++|++.++.....
T Consensus 125 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~-~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~------ 197 (545)
T PTZ00110 125 VPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPI-ALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL------ 197 (545)
T ss_pred CCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc------
Confidence 345678899999999999999999999999999999995 5578999999999999999999999988754210
Q ss_pred cCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH
Q psy16310 843 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 922 (1493)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~ 922 (1493)
.....++++|||+||||||.|+.+.+..++...++++.+++||.....+...
T Consensus 198 ----------------------------~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~ 249 (545)
T PTZ00110 198 ----------------------------LRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYA 249 (545)
T ss_pred ----------------------------ccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHH
Confidence 0123467899999999999999999999998899999999999999988888
Q ss_pred hcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 923 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 923 l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
+..+++|+|+||++|.+++..+.. .+.++++|||||||+|++++|...+..|+..+ .+.+|+++||||+|..
T Consensus 250 l~~~~~IlVaTPgrL~d~l~~~~~---~l~~v~~lViDEAd~mld~gf~~~i~~il~~~-----~~~~q~l~~SAT~p~~ 321 (545)
T PTZ00110 250 LRRGVEILIACPGRLIDFLESNVT---NLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI-----RPDRQTLMWSATWPKE 321 (545)
T ss_pred HHcCCCEEEECHHHHHHHHHcCCC---ChhhCcEEEeehHHhhhhcchHHHHHHHHHhC-----CCCCeEEEEEeCCCHH
Confidence 889999999999999999987653 46789999999999999999999999999887 3678999999999977
Q ss_pred hHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEecccc-ccccccceeeEEEecccchhhHHHHHHHh---CCC
Q psy16310 1003 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK-IGITKTLTESKILCKHDEKDSYLYYFILQ---HPG 1078 (1493)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~ 1078 (1493)
+..+..... ...+..+.+... ......+.+....+....+...+..++.. ..+
T Consensus 322 v~~l~~~l~-----------------------~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~ 378 (545)
T PTZ00110 322 VQSLARDLC-----------------------KEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGD 378 (545)
T ss_pred HHHHHHHHh-----------------------ccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCC
Confidence 665442111 011111211111 12234455556666666777777777654 467
Q ss_pred cEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCCh
Q psy16310 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 1158 (1493)
Q Consensus 1079 ~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~ 1158 (1493)
++||||+|+..|+.++..|...++.+..+||+|++.+|..+++.|++|+++|||||++++||||+|+|++|||||+|.+.
T Consensus 379 k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~ 458 (545)
T PTZ00110 379 KILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQI 458 (545)
T ss_pred eEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccc
Q psy16310 1159 EIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198 (1493)
Q Consensus 1159 ~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~ 1198 (1493)
++|+||+|||||+|+.|.|++|+++.+......+.+.+..
T Consensus 459 ~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~ 498 (545)
T PTZ00110 459 EDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLRE 498 (545)
T ss_pred HHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999998877777766654
|
|
| >KOG0336|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-57 Score=488.98 Aligned_cols=364 Identities=32% Similarity=0.535 Sum_probs=310.5
Q ss_pred ccccc-CCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 768 AEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 768 ~~f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
-+|++ |.-.+.+++.+.+.||.+|||||.+||| ++.+|.|++++|+||+|||++|++|-+-++.....
T Consensus 219 ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWP-I~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~---------- 287 (629)
T KOG0336|consen 219 CTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWP-ILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPK---------- 287 (629)
T ss_pred CcHHHHHhhhHHHHHHHHhccCCCCCcchhcccc-eeecCcceEEEEecCCCcCHHHhccceeeeeccch----------
Confidence 34543 5678899999999999999999999999 66789999999999999999999998877754221
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
......++.+|+++||||||.|+.-.+..+. +.+.+..|++||.+...|...++++
T Consensus 288 -----------------------~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrg 343 (629)
T KOG0336|consen 288 -----------------------RREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRG 343 (629)
T ss_pred -----------------------hhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcC
Confidence 1124567889999999999999998888764 6789999999999999999999999
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|+|+|||+|.++...+.. ++..+.+||+||||+|+++||.+++..|+-.+ .+.+|+++.|||+|+.+..+
T Consensus 344 veiiiatPgrlndL~~~n~i---~l~siTYlVlDEADrMLDMgFEpqIrkilldi-----RPDRqtvmTSATWP~~VrrL 415 (629)
T KOG0336|consen 344 VEIIIATPGRLNDLQMDNVI---NLASITYLVLDEADRMLDMGFEPQIRKILLDI-----RPDRQTVMTSATWPEGVRRL 415 (629)
T ss_pred ceEEeeCCchHhhhhhcCee---eeeeeEEEEecchhhhhcccccHHHHHHhhhc-----CCcceeeeecccCchHHHHH
Confidence 99999999999999877664 46689999999999999999999999998776 48899999999999888765
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccc-cccccccceeeEEEecccchhhHHHHHHHhC--CCcEEEE
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE-KIGITKTLTESKILCKHDEKDSYLYYFILQH--PGRTLVF 1083 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~IVF 1083 (1493)
... +++.|..+.+.. .......+.+..+.....++......|+... ..++|||
T Consensus 416 a~s------------------------Y~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiF 471 (629)
T KOG0336|consen 416 AQS------------------------YLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIF 471 (629)
T ss_pred HHH------------------------hhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEE
Confidence 522 223333332221 1223455666666666677776666666654 5689999
Q ss_pred ecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHH
Q psy16310 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163 (1493)
Q Consensus 1084 ~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiq 1163 (1493)
|.++..|+.|...|...|+.+..+||+-.|.+|+..++.|++|+++||||||+++||+|+|+|+||+|||+|.+++.|+|
T Consensus 472 v~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVH 551 (629)
T KOG0336|consen 472 VSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVH 551 (629)
T ss_pred EechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccc
Q psy16310 1164 RSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198 (1493)
Q Consensus 1164 r~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~ 1198 (1493)
|+||+||+|+.|.++.|++..+......+.+-|++
T Consensus 552 RvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~ 586 (629)
T KOG0336|consen 552 RVGRTGRAGRTGTSISFLTRNDWSMAEELIQILER 586 (629)
T ss_pred HhcccccCCCCcceEEEEehhhHHHHHHHHHHHHH
Confidence 99999999999999999999998887777666654
|
|
| >KOG0346|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-56 Score=485.63 Aligned_cols=360 Identities=31% Similarity=0.476 Sum_probs=317.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
.+|++|+|++.|++++.+.||++||-||+.+||.+| .|+|+++.|.||||||+||++|+++.++......
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaL-EgKDvvarArTGSGKT~AYliPllqkll~~k~t~--------- 88 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLAL-EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN--------- 88 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhh-cCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc---------
Confidence 679999999999999999999999999999999555 7899999999999999999999999998764321
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCC--cEEEEEEcCCCHHHHHHHhcC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP--VKVACVVGGMSTEKQLRILNK 925 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~--~~v~~~~gg~~~~~~~~~l~~ 925 (1493)
....++.++||+||||||.|++..+.++..+++ +++.-+...++.......|..
T Consensus 89 ------------------------~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d 144 (569)
T KOG0346|consen 89 ------------------------DGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMD 144 (569)
T ss_pred ------------------------cccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHcc
Confidence 235678899999999999999999999887764 666667777777777788889
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHh
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
.|+|+|+||+++..++..+.. ..+..+.+||+||||.|+.-||.+++..+...+ |+..|.+++|||+..++..
T Consensus 145 ~pdIvV~TP~~ll~~~~~~~~--~~~~~l~~LVvDEADLllsfGYeedlk~l~~~L-----Pr~~Q~~LmSATl~dDv~~ 217 (569)
T KOG0346|consen 145 LPDIVVATPAKLLRHLAAGVL--EYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHL-----PRIYQCFLMSATLSDDVQA 217 (569)
T ss_pred CCCeEEeChHHHHHHHhhccc--hhhhheeeEEechhhhhhhcccHHHHHHHHHhC-----CchhhheeehhhhhhHHHH
Confidence 999999999999999988764 346689999999999999999999999999999 4778999999999877654
Q ss_pred HHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccc-cccccceeeEEEecccchhhHHHHHHHhC--CCcEEE
Q psy16310 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI-GITKTLTESKILCKHDEKDSYLYYFILQH--PGRTLV 1082 (1493)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~IV 1082 (1493)
.- .+.+.+|.++.+.+.. .....+.++++.|...+|...++.++.-. .|++||
T Consensus 218 LK------------------------kL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsli 273 (569)
T KOG0346|consen 218 LK------------------------KLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLI 273 (569)
T ss_pred HH------------------------HHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEE
Confidence 32 2345677777766543 34578999999999999998888877654 899999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehh--------------------------
Q psy16310 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV-------------------------- 1136 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv-------------------------- 1136 (1493)
|+||+..|.+|.-.|+..|++..+++|.|+...|..++++|..|-++|+||||.
T Consensus 274 FVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkks 353 (569)
T KOG0346|consen 274 FVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKS 353 (569)
T ss_pred EEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCcccc
Confidence 999999999999999999999999999999999999999999999999999992
Q ss_pred ---------hhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHH
Q psy16310 1137 ---------AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192 (1493)
Q Consensus 1137 ---------~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~ 1192 (1493)
++||||+.+|.+|||||+|.+..+||||+|||||++++|.++.|+.|.+......+
T Consensus 354 kkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~l 418 (569)
T KOG0346|consen 354 KKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESL 418 (569)
T ss_pred ccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHH
Confidence 78999999999999999999999999999999999999999999999988744333
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=545.37 Aligned_cols=369 Identities=26% Similarity=0.437 Sum_probs=313.0
Q ss_pred hhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCccc
Q psy16310 764 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 843 (1493)
Q Consensus 764 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~ 843 (1493)
+.++.+|++++|++.+++.|...||..|||+|.++||.+ ..|+|++++||||||||++|++|++.+++......
T Consensus 117 p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~i-l~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~----- 190 (518)
T PLN00206 117 PPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAA-LSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGH----- 190 (518)
T ss_pred CchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-hcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccc-----
Confidence 456788999999999999999999999999999999954 57899999999999999999999998876421100
Q ss_pred CCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHh
Q psy16310 844 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 923 (1493)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l 923 (1493)
.....++++|||+||||||.|+.+.++.+++..++++..++||.....+...+
T Consensus 191 ---------------------------~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l 243 (518)
T PLN00206 191 ---------------------------PSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRI 243 (518)
T ss_pred ---------------------------ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHh
Confidence 01235678999999999999999999999988999999999999988888888
Q ss_pred cCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 924 ~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..+++|+|+|||+|.+++..+.. .+.++++|||||||+|++++|...+..++..+ +.+|+++||||+++.+
T Consensus 244 ~~~~~IiV~TPgrL~~~l~~~~~---~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l------~~~q~l~~SATl~~~v 314 (518)
T PLN00206 244 QQGVELIVGTPGRLIDLLSKHDI---ELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL------SQPQVLLFSATVSPEV 314 (518)
T ss_pred cCCCCEEEECHHHHHHHHHcCCc---cchheeEEEeecHHHHhhcchHHHHHHHHHhC------CCCcEEEEEeeCCHHH
Confidence 88999999999999999987643 46789999999999999999999999998876 4579999999999876
Q ss_pred HhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC---CCcE
Q psy16310 1004 KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH---PGRT 1080 (1493)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~ 1080 (1493)
....... ...+..+...........+.+....+....+...+..++... .+++
T Consensus 315 ~~l~~~~------------------------~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~ 370 (518)
T PLN00206 315 EKFASSL------------------------AKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPA 370 (518)
T ss_pred HHHHHHh------------------------CCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCE
Confidence 6544221 112233333333333344556666666667777777777543 4689
Q ss_pred EEEecchhhHHHHHHHHHh-cCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChh
Q psy16310 1081 LVFCNSISSVKRLTQLLTM-LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159 (1493)
Q Consensus 1081 IVF~~s~~~~~~l~~~L~~-~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~ 1159 (1493)
||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|++|+++|||||++++||||+|+|++|||||+|.+..
T Consensus 371 iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~ 450 (518)
T PLN00206 371 VVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIK 450 (518)
T ss_pred EEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHH
Confidence 9999999999999999975 589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccc
Q psy16310 1160 IYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198 (1493)
Q Consensus 1160 ~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~ 1198 (1493)
+|+||+|||||+|..|.+++|+++.+...+..+.+.+..
T Consensus 451 ~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~ 489 (518)
T PLN00206 451 EYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKS 489 (518)
T ss_pred HHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888888777664
|
|
| >KOG0341|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-57 Score=485.79 Aligned_cols=359 Identities=30% Similarity=0.510 Sum_probs=307.3
Q ss_pred hhhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCc
Q psy16310 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 841 (1493)
Q Consensus 762 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~ 841 (1493)
+.+.++.+|.++.++..+++.|++.|+.+|||||.+.+|. +..|+|+|+.|-||||||++|.+|++-..+.....
T Consensus 164 ~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPv-vLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~---- 238 (610)
T KOG0341|consen 164 DIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPV-VLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMM---- 238 (610)
T ss_pred CCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcce-EeecCceeeEEeecCCceEEEeHHHHHHHHHHHhc----
Confidence 3456678899999999999999999999999999999994 55889999999999999999999987655442110
Q ss_pred ccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCC------CCcEEEEEEcCCC
Q psy16310 842 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY------TPVKVACVVGGMS 915 (1493)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~------~~~~v~~~~gg~~ 915 (1493)
..-....++..||+||+||||.|++..+..+... ..++..+..||.+
T Consensus 239 ---------------------------lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~ 291 (610)
T KOG0341|consen 239 ---------------------------LPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVP 291 (610)
T ss_pred ---------------------------CccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCcc
Confidence 1123467889999999999999999988876543 3478899999999
Q ss_pred HHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEE
Q psy16310 916 TEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF 995 (1493)
Q Consensus 916 ~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~ 995 (1493)
..+|....+++++|+|+|||||.++|...... |.-+++|++||||+|+++||..+++.|+..+. ..+|+++|
T Consensus 292 v~eql~~v~~GvHivVATPGRL~DmL~KK~~s---Ld~CRyL~lDEADRmiDmGFEddir~iF~~FK-----~QRQTLLF 363 (610)
T KOG0341|consen 292 VREQLDVVRRGVHIVVATPGRLMDMLAKKIMS---LDACRYLTLDEADRMIDMGFEDDIRTIFSFFK-----GQRQTLLF 363 (610)
T ss_pred HHHHHHHHhcCeeEEEcCcchHHHHHHHhhcc---HHHHHHhhhhhHHHHhhccchhhHHHHHHHHh-----hhhheeee
Confidence 99999999999999999999999999876654 44678999999999999999999999999984 67999999
Q ss_pred ecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHh
Q psy16310 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 1075 (1493)
Q Consensus 996 SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 1075 (1493)
|||+|..+..+.... +-.|..+++.......-.+.+....+....|.-+++..+..
T Consensus 364 SATMP~KIQ~FAkSA------------------------LVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQK 419 (610)
T KOG0341|consen 364 SATMPKKIQNFAKSA------------------------LVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQK 419 (610)
T ss_pred eccccHHHHHHHHhh------------------------cccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhcc
Confidence 999998877665322 22344444444333333333333445667788888888888
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCC
Q psy16310 1076 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP 1155 (1493)
Q Consensus 1076 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p 1155 (1493)
...++||||..+..++.+.++|--.|..+..+||+-.|++|...++.|+.|+.+|||||||++.|+|+|++.||||||+|
T Consensus 420 T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP 499 (610)
T KOG0341|consen 420 TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMP 499 (610)
T ss_pred CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCCh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHhccCCCCCCCeEEEEecCC
Q psy16310 1156 RTSEIYIHRSGRTARANNEGLTLVLIESD 1184 (1493)
Q Consensus 1156 ~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 1184 (1493)
..++.|+||+|||||.|+.|.+.+|++..
T Consensus 500 ~eIENYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 500 EEIENYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred HHHHHHHHHhcccCCCCCcceeeeeeccc
Confidence 99999999999999999999999999764
|
|
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=461.33 Aligned_cols=358 Identities=29% Similarity=0.516 Sum_probs=296.1
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 149 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
...+|++.||++.++++++..||++|+.+|+.|||. +..|+|+|++|..|+|||.+|.+.+++.+.
T Consensus 25 v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~-IlkGrdViaQaqSGTGKTa~~si~vlq~~d------------- 90 (400)
T KOG0328|consen 25 VIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQ-ILKGRDVIAQAQSGTGKTATFSISVLQSLD------------- 90 (400)
T ss_pred cccchhhcCchHHHHHHHHHhccCCchHHHhhhhhh-hhcccceEEEecCCCCceEEEEeeeeeecc-------------
Confidence 456799999999999999999999999999999995 558899999999999999999999887652
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcC
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
-..+...+|||+||||||.|+.+++..++.++++.+..+.||.+..+....+..
T Consensus 91 --------------------------~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~ 144 (400)
T KOG0328|consen 91 --------------------------ISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDY 144 (400)
T ss_pred --------------------------cccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcc
Confidence 223456799999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
|.+++.+|||++.+++..+.+... .+.+||+||||.||+.+|..++-.|+..+
T Consensus 145 G~hvVsGtPGrv~dmikr~~L~tr---~vkmlVLDEaDemL~kgfk~Qiydiyr~l------------------------ 197 (400)
T KOG0328|consen 145 GQHVVSGTPGRVLDMIKRRSLRTR---AVKMLVLDEADEMLNKGFKEQIYDIYRYL------------------------ 197 (400)
T ss_pred cceEeeCCCchHHHHHHhcccccc---ceeEEEeccHHHHHHhhHHHHHHHHHHhC------------------------
Confidence 999999999999999998876554 78999999999999999999999999887
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
++..|++++|||+|.++.+...-....+..
T Consensus 198 ---------p~~~Qvv~~SATlp~eilemt~kfmtdpvr----------------------------------------- 227 (400)
T KOG0328|consen 198 ---------PPGAQVVLVSATLPHEILEMTEKFMTDPVR----------------------------------------- 227 (400)
T ss_pred ---------CCCceEEEEeccCcHHHHHHHHHhcCCcee-----------------------------------------
Confidence 566899999999998876544211110000
Q ss_pred hhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCc-hhhHHHHHHhhC-CCc
Q psy16310 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE-KDSYLYYFILQH-PGR 546 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~-~~~ 546 (1493)
++...+... ...+..+++...... |+..|+.+-... -.+
T Consensus 228 ilvkrdelt---------------------------------------lEgIKqf~v~ve~EewKfdtLcdLYd~LtItQ 268 (400)
T KOG0328|consen 228 ILVKRDELT---------------------------------------LEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQ 268 (400)
T ss_pred EEEecCCCc---------------------------------------hhhhhhheeeechhhhhHhHHHHHhhhhehhe
Confidence 000000000 000011111111111 233333322221 258
Q ss_pred EEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChH
Q psy16310 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626 (1493)
Q Consensus 547 ~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~ 626 (1493)
++|||||+..+.+|.+.+...++.+..+||+|++++|..++..||+|+.+||++|||.+||+|+|.|++|||||+|.+.+
T Consensus 269 avIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre 348 (400)
T KOG0328|consen 269 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRE 348 (400)
T ss_pred EEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCeEEEEecCCcchhhhhhhhh
Q psy16310 627 IYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQ 662 (1493)
Q Consensus 627 ~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~ 662 (1493)
.||||+||.||.|+.|.++.|+..+|+..+..++.+
T Consensus 349 ~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~ 384 (400)
T KOG0328|consen 349 LYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQY 384 (400)
T ss_pred HHhhhhccccccCCcceEEEEecHHHHHHHHHHHHH
Confidence 999999999999999999999999999887777543
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-55 Score=546.15 Aligned_cols=371 Identities=30% Similarity=0.473 Sum_probs=313.6
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
.+|++|+|++.++++|.+.||..|||+|.++||. +..|+|++++||||||||++|++|++++++.....
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~-~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~---------- 77 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPV-ALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPAL---------- 77 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc----------
Confidence 4699999999999999999999999999999995 55889999999999999999999999988642100
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~ 927 (1493)
.......+++|||+||+|||.|+++.+..++...++++..++||.....+...+..++
T Consensus 78 ----------------------~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~ 135 (572)
T PRK04537 78 ----------------------ADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGV 135 (572)
T ss_pred ----------------------cccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCC
Confidence 0011234689999999999999999999999999999999999999999888888889
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
+|||+||++|++++..... ..+..+++|||||||+|++++|...+..++..++.. ..+|+++||||++..+....
T Consensus 136 dIiV~TP~rL~~~l~~~~~--~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~---~~~q~ll~SATl~~~v~~l~ 210 (572)
T PRK04537 136 DVIIATPGRLIDYVKQHKV--VSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER---GTRQTLLFSATLSHRVLELA 210 (572)
T ss_pred CEEEECHHHHHHHHHhccc--cchhheeeeEecCHHHHhhcchHHHHHHHHHhcccc---cCceEEEEeCCccHHHHHHH
Confidence 9999999999999876432 246688999999999999999999999999887421 36899999999997765544
Q ss_pred hhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CCcEEEEecc
Q psy16310 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNS 1086 (1493)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~s 1086 (1493)
... +..+..+.+.........+.+.++.+....+...+..++... ..++||||+|
T Consensus 211 ~~~------------------------l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt 266 (572)
T PRK04537 211 YEH------------------------MNEPEKLVVETETITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNT 266 (572)
T ss_pred HHH------------------------hcCCcEEEeccccccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCC
Confidence 221 112222222222223344566666667777777777777654 5689999999
Q ss_pred hhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHh
Q psy16310 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 1166 (1493)
Q Consensus 1087 ~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~G 1166 (1493)
+..|+.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++|||||+|.+.++|+||+|
T Consensus 267 ~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiG 346 (572)
T PRK04537 267 KAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIG 346 (572)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1167 RTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1167 R~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
||||.|+.|.|++|+.+.+...+..+.+.+...+
T Consensus 347 RaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~ 380 (572)
T PRK04537 347 RTARLGEEGDAISFACERYAMSLPDIEAYIEQKI 380 (572)
T ss_pred ccccCCCCceEEEEecHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999888888888776554
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-55 Score=540.66 Aligned_cols=362 Identities=35% Similarity=0.559 Sum_probs=314.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
+.+|++++|++.++++|..+||.+|||+|.+|||. +..|+|++++||||||||++|++|+++++...
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~-~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------------ 69 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPA-ILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------------ 69 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc------------
Confidence 45799999999999999999999999999999995 55789999999999999999999999887321
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCHHHHHHHhcC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNK 925 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~ 925 (1493)
...+++|||+||+|||.|+++.++.++... ++++..++||.+...+...+..
T Consensus 70 ---------------------------~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~ 122 (460)
T PRK11776 70 ---------------------------RFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEH 122 (460)
T ss_pred ---------------------------cCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcC
Confidence 234579999999999999999999988765 7999999999999999999999
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHh
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
+++|+|+|||+|.+++.++.. .+.++++|||||||+|++++|...+..++..+ +..+|+++||||++..+..
T Consensus 123 ~~~IvV~Tp~rl~~~l~~~~~---~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~-----~~~~q~ll~SAT~~~~~~~ 194 (460)
T PRK11776 123 GAHIIVGTPGRILDHLRKGTL---DLDALNTLVLDEADRMLDMGFQDAIDAIIRQA-----PARRQTLLFSATYPEGIAA 194 (460)
T ss_pred CCCEEEEChHHHHHHHHcCCc---cHHHCCEEEEECHHHHhCcCcHHHHHHHHHhC-----CcccEEEEEEecCcHHHHH
Confidence 999999999999999987654 36689999999999999999999999999887 4678999999999977655
Q ss_pred HHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CCcEEEEe
Q psy16310 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFC 1084 (1493)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~ 1084 (1493)
..... +..+..+.+.... ....+.+.++.+....+...+..++... ++++||||
T Consensus 195 l~~~~------------------------~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~ 249 (460)
T PRK11776 195 ISQRF------------------------QRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFC 249 (460)
T ss_pred HHHHh------------------------cCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEE
Confidence 44221 1223333332222 2334667777777777888888877654 56899999
Q ss_pred cchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHH
Q psy16310 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164 (1493)
Q Consensus 1085 ~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr 1164 (1493)
+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||++++||||+|++++|||||+|.+..+|+||
T Consensus 250 ~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR 329 (460)
T PRK11776 250 NTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHR 329 (460)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCC
Q psy16310 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201 (1493)
Q Consensus 1165 ~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~ 1201 (1493)
+|||||+|+.|.|++|+.+.|...+..+.+.++..+.
T Consensus 330 ~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~ 366 (460)
T PRK11776 330 IGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLN 366 (460)
T ss_pred cccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999888888887766543
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-55 Score=536.53 Aligned_cols=366 Identities=31% Similarity=0.534 Sum_probs=312.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcch
Q psy16310 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848 (1493)
Q Consensus 769 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 848 (1493)
+|++|+|++.++++|.++||..|||+|.++||. +..++|++++||||||||++|++|+++.+......
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~-il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~----------- 69 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPA-VLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH----------- 69 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc-----------
Confidence 589999999999999999999999999999995 55789999999999999999999999988543110
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCc
Q psy16310 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928 (1493)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~ 928 (1493)
.......++|||+||++||.|+++.+..+..+.++++..++||.+...+...+...++
T Consensus 70 ----------------------~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~ 127 (456)
T PRK10590 70 ----------------------AKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127 (456)
T ss_pred ----------------------cccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCc
Confidence 0112346899999999999999999999999999999999999999988888888999
Q ss_pred EEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHh
Q psy16310 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008 (1493)
Q Consensus 929 IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~ 1008 (1493)
|+|+||++|++++..... .+.++++|||||||+|++++|...+..++..+ +..+|+++||||++..+.....
T Consensus 128 IiV~TP~rL~~~~~~~~~---~l~~v~~lViDEah~ll~~~~~~~i~~il~~l-----~~~~q~l~~SAT~~~~~~~l~~ 199 (456)
T PRK10590 128 VLVATPGRLLDLEHQNAV---KLDQVEILVLDEADRMLDMGFIHDIRRVLAKL-----PAKRQNLLFSATFSDDIKALAE 199 (456)
T ss_pred EEEEChHHHHHHHHcCCc---ccccceEEEeecHHHHhccccHHHHHHHHHhC-----CccCeEEEEeCCCcHHHHHHHH
Confidence 999999999999876553 46789999999999999999999999998877 4678999999999976655442
Q ss_pred hhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CCcEEEEecch
Q psy16310 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSI 1087 (1493)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~s~ 1087 (1493)
.. +..+..+.+.........+.+.+..+....+...+..++... ..++||||+++
T Consensus 200 ~~------------------------~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~ 255 (456)
T PRK10590 200 KL------------------------LHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTK 255 (456)
T ss_pred HH------------------------cCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcH
Confidence 21 122223333322333444555556666666666666655543 46899999999
Q ss_pred hhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhc
Q psy16310 1088 SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 1167 (1493)
Q Consensus 1088 ~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR 1167 (1493)
..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||++++||||+|+|++||||++|.+..+|+||+||
T Consensus 256 ~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GR 335 (456)
T PRK10590 256 HGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGR 335 (456)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1168 TARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1168 ~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
|||+|..|.+++|+.+.|...+..+.+.+...+
T Consensus 336 aGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 336 TGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred cccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999988877654
|
|
| >KOG0326|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-56 Score=466.19 Aligned_cols=355 Identities=30% Similarity=0.508 Sum_probs=305.0
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 149 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
.-.+|+++.|.+.++..+.+.||++|+|+|.++||.+| .|+|+++.|..|+|||.+|++|+++.+.
T Consensus 83 kG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaL-tGrdiLaRaKNGTGKT~a~~IP~Lekid------------- 148 (459)
T KOG0326|consen 83 KGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIAL-TGRDILARAKNGTGKTAAYCIPVLEKID------------- 148 (459)
T ss_pred cCccHHHhhhhHHHHHHHHHhccCCCCCccccccceee-cchhhhhhccCCCCCccceechhhhhcC-------------
Confidence 34579999999999999999999999999999999665 7899999999999999999999998873
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcC
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
.......++|++||||||.|+.+.+.++++++++++...+||++..+..-.+..
T Consensus 149 --------------------------~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~ 202 (459)
T KOG0326|consen 149 --------------------------PKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQ 202 (459)
T ss_pred --------------------------ccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecC
Confidence 224557899999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
.++++|+||||+++++..+-.. ++++.++|+||||.|++..|.+.++.++..+
T Consensus 203 ~VH~~vgTPGRIlDL~~KgVa~---ls~c~~lV~DEADKlLs~~F~~~~e~li~~l------------------------ 255 (459)
T KOG0326|consen 203 TVHLVVGTPGRILDLAKKGVAD---LSDCVILVMDEADKLLSVDFQPIVEKLISFL------------------------ 255 (459)
T ss_pred ceEEEEcCChhHHHHHhccccc---chhceEEEechhhhhhchhhhhHHHHHHHhC------------------------
Confidence 9999999999999999877554 5589999999999999999999999999887
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
+..+|++++|||.|-.+..+...- ...|..+++.....
T Consensus 256 ---------P~~rQillySATFP~tVk~Fm~~~------------------------l~kPy~INLM~eLt--------- 293 (459)
T KOG0326|consen 256 ---------PKERQILLYSATFPLTVKGFMDRH------------------------LKKPYEINLMEELT--------- 293 (459)
T ss_pred ---------CccceeeEEecccchhHHHHHHHh------------------------ccCcceeehhhhhh---------
Confidence 556899999999998776655311 11222222221111
Q ss_pred hhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcE
Q psy16310 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRT 547 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~ 547 (1493)
...+.+++.+.....|...|..++... -.++
T Consensus 294 ------------------------------------------------l~GvtQyYafV~e~qKvhCLntLfskLqINQs 325 (459)
T KOG0326|consen 294 ------------------------------------------------LKGVTQYYAFVEERQKVHCLNTLFSKLQINQS 325 (459)
T ss_pred ------------------------------------------------hcchhhheeeechhhhhhhHHHHHHHhcccce
Confidence 122334444555566666666555443 3689
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||||||...++.|++.+..+|+++..+|+.|.|..|.+++..|++|.++.|||||.+.||||+++|++|||||+|.+.++
T Consensus 326 IIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEt 405 (459)
T KOG0326|consen 326 IIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAET 405 (459)
T ss_pred EEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|+||+||+||.|..|.++.|++-+|......++
T Consensus 406 YLHRIGRsGRFGhlGlAInLityedrf~L~~IE 438 (459)
T KOG0326|consen 406 YLHRIGRSGRFGHLGLAINLITYEDRFNLYRIE 438 (459)
T ss_pred HHHHccCCccCCCcceEEEEEehhhhhhHHHHH
Confidence 999999999999999999999988876666553
|
|
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-55 Score=481.65 Aligned_cols=369 Identities=31% Similarity=0.513 Sum_probs=322.9
Q ss_pred hhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcc
Q psy16310 763 MFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 842 (1493)
Q Consensus 763 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~ 842 (1493)
++.++..|+.++++..|+.++...-|++|||+|.+++|.++ .|+|++..|-||||||.||+.|++-+++....
T Consensus 218 ~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptal-sgrdvigIAktgSgktaAfi~pm~~himdq~e------ 290 (731)
T KOG0339|consen 218 PPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTAL-SGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE------ 290 (731)
T ss_pred CCCCcchhhhcCchHHHHHHHhhhhcccCCccccccccccc-ccccchheeeccCcchhHHHHHHHHHhcchhh------
Confidence 45677889999999999999999999999999999999665 67899999999999999999999999876421
Q ss_pred cCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH
Q psy16310 843 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 922 (1493)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~ 922 (1493)
-....++.+||||||||||.||+.++++|++..++++++++||.+..+|...
T Consensus 291 ----------------------------L~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~ 342 (731)
T KOG0339|consen 291 ----------------------------LKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKE 342 (731)
T ss_pred ----------------------------hcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHh
Confidence 1335788999999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 923 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 923 l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
|..++.|||||||||++++.-... ++.++.+|||||||+|.++||.++++.|...+ .+.+|+++||||++..
T Consensus 343 Lk~g~EivVaTPgRlid~VkmKat---n~~rvS~LV~DEadrmfdmGfe~qVrSI~~hi-----rpdrQtllFsaTf~~k 414 (731)
T KOG0339|consen 343 LKEGAEIVVATPGRLIDMVKMKAT---NLSRVSYLVLDEADRMFDMGFEPQVRSIKQHI-----RPDRQTLLFSATFKKK 414 (731)
T ss_pred hhcCCeEEEechHHHHHHHHhhcc---cceeeeEEEEechhhhhccccHHHHHHHHhhc-----CCcceEEEeeccchHH
Confidence 999999999999999999976553 56689999999999999999999999999988 4889999999999977
Q ss_pred hHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEeccc-chhhHHHHHHHhC--CCc
Q psy16310 1003 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD-EKDSYLYYFILQH--PGR 1079 (1493)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~~--~~~ 1079 (1493)
+..+..-. +..|..+...........+++....|+.. .|...|...|... .|+
T Consensus 415 Ie~lard~------------------------L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gk 470 (731)
T KOG0339|consen 415 IEKLARDI------------------------LSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGK 470 (731)
T ss_pred HHHHHHHH------------------------hcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCc
Confidence 76654322 22333332223334455677777777665 4555665555543 579
Q ss_pred EEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChh
Q psy16310 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159 (1493)
Q Consensus 1080 ~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~ 1159 (1493)
+|||+.-+..++.++..|...++++..+||+|.|.+|.+++..|+.+...||||||+++||+|||++..|||||+-.+++
T Consensus 471 vlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardId 550 (731)
T KOG0339|consen 471 VLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDID 550 (731)
T ss_pred EEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccc
Q psy16310 1160 IYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198 (1493)
Q Consensus 1160 ~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~ 1198 (1493)
.|.||+||+||+|..|.+++++++.|....-.+.+.|+.
T Consensus 551 ththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~ 589 (731)
T KOG0339|consen 551 THTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEG 589 (731)
T ss_pred HHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhh
Confidence 999999999999999999999999999888878777754
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-54 Score=536.65 Aligned_cols=366 Identities=30% Similarity=0.489 Sum_probs=297.9
Q ss_pred ccccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccC
Q psy16310 147 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 226 (1493)
Q Consensus 147 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~ 226 (1493)
+.++.+|+++++++.++++|.++||.+|||+|.++|| .++.|+|+|++||||||||++|+||++.++.....
T Consensus 126 p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip-~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~------- 197 (545)
T PTZ00110 126 PKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWP-IALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL------- 197 (545)
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-------
Confidence 3456789999999999999999999999999999999 55578999999999999999999999988854210
Q ss_pred CCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHh
Q psy16310 227 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 306 (1493)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l 306 (1493)
.....++.+|||+|||+||.|+.+.+..++...++++.+++|+.....+...+
T Consensus 198 ---------------------------~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l 250 (545)
T PTZ00110 198 ---------------------------LRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYAL 250 (545)
T ss_pred ---------------------------ccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHH
Confidence 01134678999999999999999999999988899999999999998888888
Q ss_pred cCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
..+++|+|+||++|.+++..... .|.++++|||||||+|++++|..++..|+..+
T Consensus 251 ~~~~~IlVaTPgrL~d~l~~~~~---~l~~v~~lViDEAd~mld~gf~~~i~~il~~~---------------------- 305 (545)
T PTZ00110 251 RRGVEILIACPGRLIDFLESNVT---NLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI---------------------- 305 (545)
T ss_pred HcCCCEEEECHHHHHHHHHcCCC---ChhhCcEEEeehHHhhhhcchHHHHHHHHHhC----------------------
Confidence 89999999999999999987654 35689999999999999999999999998766
Q ss_pred hhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccch
Q psy16310 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 466 (1493)
Q Consensus 387 ~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1493)
.+.+|+++||||+|..+..+...... ..+..+... ...
T Consensus 306 -----------~~~~q~l~~SAT~p~~v~~l~~~l~~-----------------------~~~v~i~vg-~~~------- 343 (545)
T PTZ00110 306 -----------RPDRQTLMWSATWPKEVQSLARDLCK-----------------------EEPVHVNVG-SLD------- 343 (545)
T ss_pred -----------CCCCeEEEEEeCCCHHHHHHHHHHhc-----------------------cCCEEEEEC-CCc-------
Confidence 34479999999999876554421100 000000000 000
Q ss_pred hhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhh---C
Q psy16310 467 SKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ---H 543 (1493)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~ 543 (1493)
......+......+....|...|..++.. .
T Consensus 344 -----------------------------------------------l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~ 376 (545)
T PTZ00110 344 -----------------------------------------------LTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRD 376 (545)
T ss_pred -----------------------------------------------cccCCCeeEEEEEEechhHHHHHHHHHHHhccc
Confidence 00000011111222233445555555544 4
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCC
Q psy16310 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623 (1493)
Q Consensus 544 ~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~ 623 (1493)
..++||||+++..|+.|+..|...++.+..+||+|++.+|..+++.|++|+.+|||||++++||||||+|++||+||+|.
T Consensus 377 ~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~ 456 (545)
T PTZ00110 377 GDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPN 456 (545)
T ss_pred CCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 624 TSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 624 s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
++.+|+||+|||||+|+.|.|++|+++++......+..
T Consensus 457 s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~ 494 (545)
T PTZ00110 457 QIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVK 494 (545)
T ss_pred CHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHH
Confidence 99999999999999999999999999998776666543
|
|
| >KOG0336|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-55 Score=472.44 Aligned_cols=365 Identities=31% Similarity=0.516 Sum_probs=302.5
Q ss_pred ccccccc-ccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccC
Q psy16310 148 VQMAEWV-KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 226 (1493)
Q Consensus 148 ~~~~~f~-~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~ 226 (1493)
.+..+|+ .|+-.+.++..+.+.||.+|||||+++|| +++.|.|+|++|.||+|||++|++|.+-|+.....
T Consensus 216 nP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWP-I~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~------- 287 (629)
T KOG0336|consen 216 NPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWP-ILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPK------- 287 (629)
T ss_pred CCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccc-eeecCcceEEEEecCCCcCHHHhccceeeeeccch-------
Confidence 3445565 46788999999999999999999999999 66789999999999999999999999888754221
Q ss_pred CCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHh
Q psy16310 227 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 306 (1493)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l 306 (1493)
......++.+|+++|||+||.|+.-.+..+. +.+++..|++||.+...+...+
T Consensus 288 --------------------------~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~l 340 (629)
T KOG0336|consen 288 --------------------------RREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDL 340 (629)
T ss_pred --------------------------hhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHH
Confidence 1124567889999999999999988887764 5689999999999999999999
Q ss_pred cCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
.++.+|+|+|||+|.++...+.++ |.+|.+||+||||+||+|+|.++++.|+-.+
T Consensus 341 krgveiiiatPgrlndL~~~n~i~---l~siTYlVlDEADrMLDMgFEpqIrkilldi---------------------- 395 (629)
T KOG0336|consen 341 KRGVEIIIATPGRLNDLQMDNVIN---LASITYLVLDEADRMLDMGFEPQIRKILLDI---------------------- 395 (629)
T ss_pred hcCceEEeeCCchHhhhhhcCeee---eeeeEEEEecchhhhhcccccHHHHHHhhhc----------------------
Confidence 999999999999999998877665 4589999999999999999999999998665
Q ss_pred hhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccch
Q psy16310 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 466 (1493)
Q Consensus 387 ~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1493)
.+.+|+++.|||+|+.+..+....... +-++ +.+.+.
T Consensus 396 -----------RPDRqtvmTSATWP~~VrrLa~sY~Ke------------------------p~~v-~vGsLd------- 432 (629)
T KOG0336|consen 396 -----------RPDRQTVMTSATWPEGVRRLAQSYLKE------------------------PMIV-YVGSLD------- 432 (629)
T ss_pred -----------CCcceeeeecccCchHHHHHHHHhhhC------------------------ceEE-Eecccc-------
Confidence 456899999999999887665321111 0000 000000
Q ss_pred hhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC--C
Q psy16310 467 SKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH--P 544 (1493)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~ 544 (1493)
+.....+.+..++.....|...+..++..+ .
T Consensus 433 -----------------------------------------------L~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~n 465 (629)
T KOG0336|consen 433 -----------------------------------------------LVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSN 465 (629)
T ss_pred -----------------------------------------------eeeeeeeeeeEEecccHHHHHHHHHHHHhcCCC
Confidence 000112223334445556666666666655 4
Q ss_pred CcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCC
Q psy16310 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624 (1493)
Q Consensus 545 ~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s 624 (1493)
.++||||.+...|..|+.-|...|+....+||+-.|.+|...++.|++|.++||||||+++||||+|+|+||+|||+|.+
T Consensus 466 dKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~n 545 (629)
T KOG0336|consen 466 DKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRN 545 (629)
T ss_pred ceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCcc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhhh
Q psy16310 625 SEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQ 662 (1493)
Q Consensus 625 ~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~ 662 (1493)
++.|+||+|||||+|+.|.+++|++-.|......|...
T Consensus 546 IeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~I 583 (629)
T KOG0336|consen 546 IEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQI 583 (629)
T ss_pred HHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHH
Confidence 99999999999999999999999999998887776543
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-54 Score=526.56 Aligned_cols=362 Identities=31% Similarity=0.485 Sum_probs=295.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|++++|++.++++|...||..|||+|.++|| .+..|+|++++||||||||++|++|+++++.......
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip-~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~--------- 77 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALP-LTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE--------- 77 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccc---------
Confidence 479999999999999999999999999999999 5568899999999999999999999999986532110
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~ 310 (1493)
.....++++|||+|||+||.|+++.+..++...++++..++||.....+...+..++
T Consensus 78 -----------------------~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~ 134 (423)
T PRK04837 78 -----------------------DRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGV 134 (423)
T ss_pred -----------------------ccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCC
Confidence 011345789999999999999999999999999999999999999888888888889
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+|+|+||++|++++..+... +.++.+|||||||+|++++|...+..++..+..
T Consensus 135 ~IlV~TP~~l~~~l~~~~~~---l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~------------------------ 187 (423)
T PRK04837 135 DILIGTTGRLIDYAKQNHIN---LGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPP------------------------ 187 (423)
T ss_pred CEEEECHHHHHHHHHcCCcc---cccccEEEEecHHHHhhcccHHHHHHHHHhCCC------------------------
Confidence 99999999999999876554 558999999999999999999999988876632
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
...++.++||||++..+..+...... .+..+.+....
T Consensus 188 -------~~~~~~~l~SAT~~~~~~~~~~~~~~------------------------~p~~i~v~~~~------------ 224 (423)
T PRK04837 188 -------ANQRLNMLFSATLSYRVRELAFEHMN------------------------NPEYVEVEPEQ------------ 224 (423)
T ss_pred -------ccceeEEEEeccCCHHHHHHHHHHCC------------------------CCEEEEEcCCC------------
Confidence 13467899999998766544321110 00000000000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcEEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLV 549 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~II 549 (1493)
.....+......+....|...+..++... ..++||
T Consensus 225 --------------------------------------------~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lV 260 (423)
T PRK04837 225 --------------------------------------------KTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAII 260 (423)
T ss_pred --------------------------------------------cCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 00000011111222334556666666543 579999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHH
Q psy16310 550 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629 (1493)
Q Consensus 550 F~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yi 629 (1493)
||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+++|||||++++||||+|+|++||+||+|.++.+|+
T Consensus 261 F~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yi 340 (423)
T PRK04837 261 FANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYV 340 (423)
T ss_pred EECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 630 HRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 630 QR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
||+|||||+|+.|.|++|+++.|...+..+
T Consensus 341 qR~GR~gR~G~~G~ai~~~~~~~~~~~~~i 370 (423)
T PRK04837 341 HRIGRTGRAGASGHSISLACEEYALNLPAI 370 (423)
T ss_pred eccccccCCCCCeeEEEEeCHHHHHHHHHH
Confidence 999999999999999999999877666655
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=522.15 Aligned_cols=363 Identities=31% Similarity=0.520 Sum_probs=307.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcch
Q psy16310 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848 (1493)
Q Consensus 769 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 848 (1493)
+|++++|++.++++|.+.||..||++|.++||.++ .|+|++++||||||||++|++|++++++....
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~-~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~------------ 68 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPAL-DGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR------------ 68 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhhccc------------
Confidence 59999999999999999999999999999999655 77899999999999999999999998864210
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCc
Q psy16310 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928 (1493)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~ 928 (1493)
....+.++|||+||++||.|+++.+..++...++++..++||.....+...+..+++
T Consensus 69 -----------------------~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~ 125 (434)
T PRK11192 69 -----------------------RKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQD 125 (434)
T ss_pred -----------------------cCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCC
Confidence 112346899999999999999999999999999999999999999998888888999
Q ss_pred EEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc-hHhHH
Q psy16310 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS-LKNSL 1007 (1493)
Q Consensus 929 IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~-~~~~~ 1007 (1493)
|+|+||++|++++..+.+ .+.++++|||||||+|++++|...+..+...+ +...|+++||||++.. +....
T Consensus 126 IlV~Tp~rl~~~~~~~~~---~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~-----~~~~q~~~~SAT~~~~~~~~~~ 197 (434)
T PRK11192 126 IVVATPGRLLQYIKEENF---DCRAVETLILDEADRMLDMGFAQDIETIAAET-----RWRKQTLLFSATLEGDAVQDFA 197 (434)
T ss_pred EEEEChHHHHHHHHcCCc---CcccCCEEEEECHHHHhCCCcHHHHHHHHHhC-----ccccEEEEEEeecCHHHHHHHH
Confidence 999999999999987654 35678999999999999999999999888766 3568999999999853 22222
Q ss_pred hhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecc-cchhhHHHHHHHh-CCCcEEEEec
Q psy16310 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQ-HPGRTLVFCN 1085 (1493)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~-~~~~~IVF~~ 1085 (1493)
. .+ +..+..+...........+.+.+..+.. ..+...+..++.. ..+++||||+
T Consensus 198 ~-----------------------~~-~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~ 253 (434)
T PRK11192 198 E-----------------------RL-LNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVR 253 (434)
T ss_pred H-----------------------HH-ccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 1 11 1223333333333333445555555543 4566666666655 4679999999
Q ss_pred chhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHH
Q psy16310 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165 (1493)
Q Consensus 1086 s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~ 1165 (1493)
++..|+.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++|||||+|.+...|+||+
T Consensus 254 s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~ 333 (434)
T PRK11192 254 TRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRI 333 (434)
T ss_pred ChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCeEEEEecCCCHHHHHHHHHhcccc
Q psy16310 1166 GRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1166 GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~ 1199 (1493)
|||||+|..|.+++|++..|...+.++.+.+...
T Consensus 334 GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~ 367 (434)
T PRK11192 334 GRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEP 367 (434)
T ss_pred cccccCCCCceEEEEecHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988888887666543
|
|
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-54 Score=491.87 Aligned_cols=370 Identities=31% Similarity=0.498 Sum_probs=304.6
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 149 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
.+..|.+-.+.+.+..++...||..|||||+.+|| .+.+|+|+++||+||||||.+|++|++.+++.........
T Consensus 72 ~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip-~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~---- 146 (482)
T KOG0335|consen 72 HIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIP-IISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGE---- 146 (482)
T ss_pred CcccccccchhHHHhhccccccccCCCcceeeccc-eeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcc----
Confidence 34477778899999999999999999999999998 7889999999999999999999999999998643322111
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcC
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
......|++|||+||||||.|+++.++++....++++...+|+.+...+...+..
T Consensus 147 -------------------------~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~ 201 (482)
T KOG0335|consen 147 -------------------------SGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKR 201 (482)
T ss_pred -------------------------cCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhcc
Confidence 1112458999999999999999999999998899999999999999999999999
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhh-cCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
+|||+|||||+|.+++..+.+.+. ++.++|+||||+|++ ++|.++++.|+......+
T Consensus 202 gcdIlvaTpGrL~d~~e~g~i~l~---~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~------------------- 259 (482)
T KOG0335|consen 202 GCDILVATPGRLKDLIERGKISLD---NCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPP------------------- 259 (482)
T ss_pred CccEEEecCchhhhhhhcceeehh---hCcEEEecchHHhhhhccccccHHHHhcccCCCC-------------------
Confidence 999999999999999998887665 788999999999999 999999999998765432
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 467 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1493)
...+|+++||||.|..+..+...... + .
T Consensus 260 ----------~~~~qt~mFSAtfp~~iq~l~~~fl~------------------~------------------------~ 287 (482)
T KOG0335|consen 260 ----------KNNRQTLLFSATFPKEIQRLAADFLK------------------D------------------------N 287 (482)
T ss_pred ----------ccceeEEEEeccCChhhhhhHHHHhh------------------c------------------------c
Confidence 34589999999999876553321100 0 0
Q ss_pred hhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCC---
Q psy16310 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP--- 544 (1493)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~--- 544 (1493)
++++ ......+....+.+....+....|...|+.+|....
T Consensus 288 yi~l-------------------------------------aV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~ 330 (482)
T KOG0335|consen 288 YIFL-------------------------------------AVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPP 330 (482)
T ss_pred ceEE-------------------------------------EEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCc
Confidence 0000 000001112223333444555566666666665321
Q ss_pred --C-----cEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEE
Q psy16310 545 --G-----RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI 617 (1493)
Q Consensus 545 --~-----~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI 617 (1493)
+ .++|||.+.+.|..|+.+|...++++..+||+.++.+|.++++.|+.|++.|||||+|++||||||+|+|||
T Consensus 331 ~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVI 410 (482)
T KOG0335|consen 331 SDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVI 410 (482)
T ss_pred ccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeE
Confidence 2 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 618 HYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 618 ~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
+||+|.+..+|+||+|||||+|+.|.++.|++..+....+.+
T Consensus 411 nyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L 452 (482)
T KOG0335|consen 411 NYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKAL 452 (482)
T ss_pred EeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHH
Confidence 999999999999999999999999999999996665555444
|
|
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-54 Score=458.83 Aligned_cols=369 Identities=24% Similarity=0.440 Sum_probs=308.7
Q ss_pred CcchhhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhcc-CCcEEEEccCCCcchhHhhHHHHHHHhhhcCC
Q psy16310 759 NNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 837 (1493)
Q Consensus 759 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~dvlv~apTGsGKTla~~lpil~~l~~~~~~ 837 (1493)
+++.+..+..+|++|+|.|+++++|+.++|..|+.||..|+|.++.. .+|+|+++..|+|||.||.|.+|.++..
T Consensus 81 dpnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~---- 156 (477)
T KOG0332|consen 81 DPNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP---- 156 (477)
T ss_pred CCCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc----
Confidence 46677888999999999999999999999999999999999965543 4799999999999999999999988732
Q ss_pred CCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHH
Q psy16310 838 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTE 917 (1493)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~ 917 (1493)
....|+++.|+||||||.|+.+.+.+++++.+++....+.|....
T Consensus 157 -----------------------------------~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~ 201 (477)
T KOG0332|consen 157 -----------------------------------DVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAK 201 (477)
T ss_pred -----------------------------------cccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccc
Confidence 244567999999999999999999999999999988888765221
Q ss_pred HHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccC-CChhHHHHHHHHhcccCCCCCceEEEEe
Q psy16310 918 KQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTFVFS 996 (1493)
Q Consensus 918 ~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~-~~~~~l~~il~~l~~~~~~~~~q~ll~S 996 (1493)
.-.. -..+|+|+|||.+.+++.. +....+..++++|+||||.|++. ||.++-..|...+ +.+.|+++||
T Consensus 202 rG~~---i~eqIviGTPGtv~Dlm~k--lk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~l-----P~~~QllLFS 271 (477)
T KOG0332|consen 202 RGNK---LTEQIVIGTPGTVLDLMLK--LKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSL-----PRNQQLLLFS 271 (477)
T ss_pred cCCc---chhheeeCCCccHHHHHHH--HHhhChhhceEEEecchhhhhhcccccccchhhhhhc-----CCcceEEeee
Confidence 1110 0137999999999999975 12234668999999999999865 7877777777776 4689999999
Q ss_pred cccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEeccc-chhhHHHHHHHh
Q psy16310 997 ATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD-EKDSYLYYFILQ 1075 (1493)
Q Consensus 997 ATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~ 1075 (1493)
||+...+..+... -+.++..+.+.........+.++++.|... +|...+..+...
T Consensus 272 ATf~e~V~~Fa~k------------------------ivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~ 327 (477)
T KOG0332|consen 272 ATFVEKVAAFALK------------------------IVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGL 327 (477)
T ss_pred chhHHHHHHHHHH------------------------hcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhh
Confidence 9998887766532 234555666666666778889999999764 566666553222
Q ss_pred -CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecC
Q psy16310 1076 -HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 1154 (1493)
Q Consensus 1076 -~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~ 1154 (1493)
.-++.||||.|+++|.+|+..|...|+.+..+||+|.-.+|..++++|+.|..+|||+|+|++||||++.|++|||||+
T Consensus 328 ~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydl 407 (477)
T KOG0332|consen 328 LTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDL 407 (477)
T ss_pred hhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCC
Confidence 2579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------ChhHHHHHHhccCCCCCCCeEEEEecCCCH-HHHHHHHHhccccC
Q psy16310 1155 PR------TSEIYIHRSGRTARANNEGLTLVLIESDEI-PLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1155 p~------s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~-~~~~~~~~~~~~~~ 1200 (1493)
|. +.+.|+||+|||||.|+.|.++.|++..+. ..+.+|.++++..+
T Consensus 408 P~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i 460 (477)
T KOG0332|consen 408 PVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKI 460 (477)
T ss_pred ccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcc
Confidence 94 689999999999999999999999988765 45557777776543
|
|
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=473.35 Aligned_cols=386 Identities=30% Similarity=0.434 Sum_probs=297.4
Q ss_pred CHHHHHHHHHCCCCCChHHHHhhhhhhhc--------cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 159 PETIIRALYQKGFKTPTKIQSMVMPSALL--------ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 159 ~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~--------~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
...+...+.++++++.+|+|..++|..+. .++|++|.||||||||++|+|||++.+..
T Consensus 145 ea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~-------------- 210 (620)
T KOG0350|consen 145 EATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSS-------------- 210 (620)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHcc--------------
Confidence 34455668999999999999999985542 26799999999999999999999998843
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCC-
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC- 309 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~- 309 (1493)
+..+..+||||+||++|+.|++++|..+....|+.|+.+.|..+...+...+.+.
T Consensus 211 ------------------------R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~ 266 (620)
T KOG0350|consen 211 ------------------------RPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDP 266 (620)
T ss_pred ------------------------CCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCC
Confidence 2345689999999999999999999999999999999999999988888777543
Q ss_pred ----CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCC--cc
Q psy16310 310 ----PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGH--FP 383 (1493)
Q Consensus 310 ----~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~--~~ 383 (1493)
.||+|+|||||.++|.+.. ...|.++++|||||||+|++..|.+|+..++..+...........++.... .|
T Consensus 267 ~~~~~DIlVaTPGRLVDHl~~~k--~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~p 344 (620)
T KOG0350|consen 267 PECRIDILVATPGRLVDHLNNTK--SFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQP 344 (620)
T ss_pred CccccceEEcCchHHHHhccCCC--CcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCc
Confidence 3899999999999998532 234779999999999999999999999999987765422111111111111 11
Q ss_pred hhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccc
Q psy16310 384 ELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKT 463 (1493)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1493)
.+..-+... .....++.+.++||||++.....+..+....+....+...
T Consensus 345 t~~~e~~t~-~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~------------------------------ 393 (620)
T KOG0350|consen 345 TVLSELLTK-LGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKP------------------------------ 393 (620)
T ss_pred hhhHHHHhh-cCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecc------------------------------
Confidence 110000000 0223456678889999987655544333222111111000
Q ss_pred cchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC
Q psy16310 464 LTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 543 (1493)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 543 (1493)
+....+++..+.+..+.+...-+...++.++...
T Consensus 394 ----------------------------------------------~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~ 427 (620)
T KOG0350|consen 394 ----------------------------------------------LIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN 427 (620)
T ss_pred ----------------------------------------------cceeeecChhhhhceeecccccchHhHHHHHHHh
Confidence 0112234445555666666667777788887766
Q ss_pred C-CcEEEEecchhhHHHHHHHHH----hcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE
Q psy16310 544 P-GRTLVFCNSISSVKRLTQLLT----MLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618 (1493)
Q Consensus 544 ~-~~~IIF~~s~~~a~~L~~~L~----~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~ 618 (1493)
. .++|+|+++..++.+|+..|+ ..++.+..+.|+++...|.+.+++|..|.++||||||+++||||+.+|+.|||
T Consensus 428 k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN 507 (620)
T KOG0350|consen 428 KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN 507 (620)
T ss_pred hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee
Confidence 4 699999999999999999997 23667777999999999999999999999999999999999999999999999
Q ss_pred ecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 619 YHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 619 yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
||+|.+...|+||+|||||||+.|+||++....+...+.++..
T Consensus 508 Yd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~ 550 (620)
T KOG0350|consen 508 YDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLK 550 (620)
T ss_pred cCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHH
Confidence 9999999999999999999999999999999999887777644
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-53 Score=525.32 Aligned_cols=363 Identities=25% Similarity=0.428 Sum_probs=292.6
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCC
Q psy16310 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 227 (1493)
Q Consensus 148 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 227 (1493)
.++.+|+++++++.+++.|.+.||..|||+|.++||. +..|+|+|++||||||||++|++|++.++.......
T Consensus 118 ~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~-il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~------ 190 (518)
T PLN00206 118 PPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPA-ALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGH------ 190 (518)
T ss_pred chhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccc------
Confidence 5567899999999999999999999999999999995 558899999999999999999999999886421110
Q ss_pred CccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc
Q psy16310 228 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 307 (1493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~ 307 (1493)
.....++++|||+|||+||.|+.+.+..+....++++..++||.....+...+.
T Consensus 191 --------------------------~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~ 244 (518)
T PLN00206 191 --------------------------PSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQ 244 (518)
T ss_pred --------------------------ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhc
Confidence 011256789999999999999999999999888999999999999888888888
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
.+++|+|+|||+|.+++...... +.++.+|||||||+|++++|.+++..++..+
T Consensus 245 ~~~~IiV~TPgrL~~~l~~~~~~---l~~v~~lViDEad~ml~~gf~~~i~~i~~~l----------------------- 298 (518)
T PLN00206 245 QGVELIVGTPGRLIDLLSKHDIE---LDNVSVLVLDEVDCMLERGFRDQVMQIFQAL----------------------- 298 (518)
T ss_pred CCCCEEEECHHHHHHHHHcCCcc---chheeEEEeecHHHHhhcchHHHHHHHHHhC-----------------------
Confidence 89999999999999999876443 5689999999999999999999998888654
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 467 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1493)
+.+|+++||||+++.+..+....... +..+......
T Consensus 299 -----------~~~q~l~~SATl~~~v~~l~~~~~~~------------------------~~~i~~~~~~--------- 334 (518)
T PLN00206 299 -----------SQPQVLLFSATVSPEVEKFASSLAKD------------------------IILISIGNPN--------- 334 (518)
T ss_pred -----------CCCcEEEEEeeCCHHHHHHHHHhCCC------------------------CEEEEeCCCC---------
Confidence 13599999999998766544211100 0000000000
Q ss_pred hhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC---C
Q psy16310 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH---P 544 (1493)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~ 544 (1493)
............+....+...+..++... .
T Consensus 335 -----------------------------------------------~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~ 367 (518)
T PLN00206 335 -----------------------------------------------RPNKAVKQLAIWVETKQKKQKLFDILKSKQHFK 367 (518)
T ss_pred -----------------------------------------------CCCcceeEEEEeccchhHHHHHHHHHHhhcccC
Confidence 00000011111222233444455555432 3
Q ss_pred CcEEEEecchhhHHHHHHHHHh-cCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCC
Q psy16310 545 GRTLVFCNSISSVKRLTQLLTM-LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623 (1493)
Q Consensus 545 ~~~IIF~~s~~~a~~L~~~L~~-~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~ 623 (1493)
+++||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|++|+.+|||||++++||||+|+|++||+||+|.
T Consensus 368 ~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~ 447 (518)
T PLN00206 368 PPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPN 447 (518)
T ss_pred CCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCC
Confidence 6899999999999999999975 589999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 624 TSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 624 s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
++.+|+||+|||||+|..|.|++|+++++...+..+.
T Consensus 448 s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 448 TIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred CHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHH
Confidence 9999999999999999999999999998876665553
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-53 Score=518.63 Aligned_cols=360 Identities=31% Similarity=0.526 Sum_probs=293.2
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccc
Q psy16310 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 231 (1493)
+|++++|++.++++|.++||..|||+|.++|| .+..++|+|++||||||||++|++|+++.+......
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~-~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~----------- 69 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIP-AVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH----------- 69 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc-----------
Confidence 58899999999999999999999999999999 566789999999999999999999999988542110
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCC
Q psy16310 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311 (1493)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~ 311 (1493)
......+++|||+||++||.|+.+.+..+....++.+..++|+.+...++..+...++
T Consensus 70 ----------------------~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~ 127 (456)
T PRK10590 70 ----------------------AKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127 (456)
T ss_pred ----------------------cccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCc
Confidence 0122346899999999999999999999999899999999999999988888888999
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1493)
|+||||++|++++...... ++++++|||||||+|++++|...+..++..+
T Consensus 128 IiV~TP~rL~~~~~~~~~~---l~~v~~lViDEah~ll~~~~~~~i~~il~~l--------------------------- 177 (456)
T PRK10590 128 VLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRMLDMGFIHDIRRVLAKL--------------------------- 177 (456)
T ss_pred EEEEChHHHHHHHHcCCcc---cccceEEEeecHHHHhccccHHHHHHHHHhC---------------------------
Confidence 9999999999998766543 5689999999999999999999999888765
Q ss_pred ccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhh
Q psy16310 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 471 (1493)
Q Consensus 392 ~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1493)
+..+|+++||||++..+..+....... +..+.+....
T Consensus 178 ------~~~~q~l~~SAT~~~~~~~l~~~~~~~------------------------~~~i~~~~~~------------- 214 (456)
T PRK10590 178 ------PAKRQNLLFSATFSDDIKALAEKLLHN------------------------PLEIEVARRN------------- 214 (456)
T ss_pred ------CccCeEEEEeCCCcHHHHHHHHHHcCC------------------------CeEEEEeccc-------------
Confidence 344799999999997765543211100 0000000000
Q ss_pred ccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcEEEE
Q psy16310 472 KHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVF 550 (1493)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IIF 550 (1493)
.....+......+....+..++..++... ..++|||
T Consensus 215 -------------------------------------------~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF 251 (456)
T PRK10590 215 -------------------------------------------TASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVF 251 (456)
T ss_pred -------------------------------------------ccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 00000011111222223344455555433 3689999
Q ss_pred ecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHH
Q psy16310 551 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630 (1493)
Q Consensus 551 ~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQ 630 (1493)
|+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||++++||||+|+|++||+||+|.++.+|+|
T Consensus 252 ~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvq 331 (456)
T PRK10590 252 TRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVH 331 (456)
T ss_pred cCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 631 RSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 631 R~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
|+|||||+|..|.|++|+...|...+..++.
T Consensus 332 R~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~ 362 (456)
T PRK10590 332 RIGRTGRAAATGEALSLVCVDEHKLLRDIEK 362 (456)
T ss_pred hccccccCCCCeeEEEEecHHHHHHHHHHHH
Confidence 9999999999999999999998887776644
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=518.52 Aligned_cols=353 Identities=35% Similarity=0.562 Sum_probs=293.0
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
+.+|++++|++.++++|..+||..|||+|.++|| .+..|+|+|++||||||||++|++|+++++..
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~-~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~------------- 68 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLP-AILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV------------- 68 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh-------------
Confidence 3579999999999999999999999999999999 55688999999999999999999999988732
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHHHHHHhcC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
....+++|||+||++||.|+.+.++.++... ++++..++||.+...+...+..
T Consensus 69 --------------------------~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~ 122 (460)
T PRK11776 69 --------------------------KRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEH 122 (460)
T ss_pred --------------------------ccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcC
Confidence 1224579999999999999999999887654 7999999999999999999999
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
+++|+|+||++|.+++..+... +.++++|||||||+|++++|...+..++..+
T Consensus 123 ~~~IvV~Tp~rl~~~l~~~~~~---l~~l~~lViDEad~~l~~g~~~~l~~i~~~~------------------------ 175 (460)
T PRK11776 123 GAHIIVGTPGRILDHLRKGTLD---LDALNTLVLDEADRMLDMGFQDAIDAIIRQA------------------------ 175 (460)
T ss_pred CCCEEEEChHHHHHHHHcCCcc---HHHCCEEEEECHHHHhCcCcHHHHHHHHHhC------------------------
Confidence 9999999999999999876554 4589999999999999999999999998776
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
+..+|+++||||+++.+..+....... +..+.....
T Consensus 176 ---------~~~~q~ll~SAT~~~~~~~l~~~~~~~------------------------~~~i~~~~~----------- 211 (460)
T PRK11776 176 ---------PARRQTLLFSATYPEGIAAISQRFQRD------------------------PVEVKVEST----------- 211 (460)
T ss_pred ---------CcccEEEEEEecCcHHHHHHHHHhcCC------------------------CEEEEECcC-----------
Confidence 345799999999998765544211100 000000000
Q ss_pred hhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcE
Q psy16310 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRT 547 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~ 547 (1493)
.....+....+.+....+...+..++... +.++
T Consensus 212 ----------------------------------------------~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 245 (460)
T PRK11776 212 ----------------------------------------------HDLPAIEQRFYEVSPDERLPALQRLLLHHQPESC 245 (460)
T ss_pred ----------------------------------------------CCCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCce
Confidence 00001112222333344666666766554 5689
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||++++||||+|+|++||+||+|.++..
T Consensus 246 lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~ 325 (460)
T PRK11776 246 VVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEV 325 (460)
T ss_pred EEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
|+||+|||||+|..|.|++|+++.|...+..+
T Consensus 326 yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i 357 (460)
T PRK11776 326 HVHRIGRTGRAGSKGLALSLVAPEEMQRANAI 357 (460)
T ss_pred hhhhcccccCCCCcceEEEEEchhHHHHHHHH
Confidence 99999999999999999999999876655544
|
|
| >KOG0346|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=464.53 Aligned_cols=361 Identities=30% Similarity=0.480 Sum_probs=305.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|++++|++.+++++.+.||.+||-||+.+||.+| .|+|+++.|.||||||++|++|+++.|+......
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaL-EgKDvvarArTGSGKT~AYliPllqkll~~k~t~--------- 88 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLAL-EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN--------- 88 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhh-cCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc---------
Confidence 579999999999999999999999999999999555 7899999999999999999999999998643221
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCC--eEEEEEEcCCCHHHHHHHhcC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP--VKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~--i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
....++.++||+||||||+|++.++..+..+.+ +++.-+..+++.......+..
T Consensus 89 ------------------------~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d 144 (569)
T KOG0346|consen 89 ------------------------DGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMD 144 (569)
T ss_pred ------------------------cccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHcc
Confidence 234678899999999999999999998876654 666667777777777788888
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
.++|+|+||++|+.++..+.. ..+..+++||+||||.++..||.+.+..+...+
T Consensus 145 ~pdIvV~TP~~ll~~~~~~~~--~~~~~l~~LVvDEADLllsfGYeedlk~l~~~L------------------------ 198 (569)
T KOG0346|consen 145 LPDIVVATPAKLLRHLAAGVL--EYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHL------------------------ 198 (569)
T ss_pred CCCeEEeChHHHHHHHhhccc--hhhhheeeEEechhhhhhhcccHHHHHHHHHhC------------------------
Confidence 999999999999999987764 235589999999999999999999999999887
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
++..|.++||||++.++..+-.+.. .+|.+..+.
T Consensus 199 ---------Pr~~Q~~LmSATl~dDv~~LKkL~l------------------------~nPviLkl~------------- 232 (569)
T KOG0346|consen 199 ---------PRIYQCFLMSATLSDDVQALKKLFL------------------------HNPVILKLT------------- 232 (569)
T ss_pred ---------CchhhheeehhhhhhHHHHHHHHhc------------------------cCCeEEEec-------------
Confidence 4558999999999987754432211 111111110
Q ss_pred hhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC--CCc
Q psy16310 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH--PGR 546 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~ 546 (1493)
......+..+.++.+.|...+|+.+++.++.-. .|+
T Consensus 233 ------------------------------------------e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gK 270 (569)
T KOG0346|consen 233 ------------------------------------------EGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGK 270 (569)
T ss_pred ------------------------------------------cccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCc
Confidence 011123456677888999889998888877543 799
Q ss_pred EEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEech-----------------------
Q psy16310 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV----------------------- 603 (1493)
Q Consensus 547 ~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv----------------------- 603 (1493)
+|||+|+.+.|.+|.-.|...|+..++++|.|+...|..+++.|..|-+.|+||||.
T Consensus 271 sliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~knd 350 (569)
T KOG0346|consen 271 SLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKND 350 (569)
T ss_pred eEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCc
Confidence 999999999999999999999999999999999999999999999999999999992
Q ss_pred ------------hhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 604 ------------AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 604 ------------~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
++||||+.+|..|||||+|.++.+||||+|||||++++|.++.|+.|.+..-...+
T Consensus 351 kkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~l 418 (569)
T KOG0346|consen 351 KKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESL 418 (569)
T ss_pred cccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHH
Confidence 57999999999999999999999999999999999999999999999887755444
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-52 Score=520.38 Aligned_cols=364 Identities=30% Similarity=0.474 Sum_probs=294.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|++++|++.++++|.+.||..|||+|.++|| .++.|+|+|++||||||||++|++|+++++......
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip-~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~---------- 77 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLP-VALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPAL---------- 77 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc----------
Confidence 369999999999999999999999999999999 566889999999999999999999999988642100
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~ 310 (1493)
.......+++|||+||++||.|+++.+..++...++++..++|+.....+...+..++
T Consensus 78 ----------------------~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~ 135 (572)
T PRK04537 78 ----------------------ADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGV 135 (572)
T ss_pred ----------------------cccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCC
Confidence 0011234789999999999999999999999999999999999999998888888889
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+|||+||++|++++..... ..+..+++|||||||+|++++|...+..++..+...
T Consensus 136 dIiV~TP~rL~~~l~~~~~--~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~----------------------- 190 (572)
T PRK04537 136 DVIIATPGRLIDYVKQHKV--VSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER----------------------- 190 (572)
T ss_pred CEEEECHHHHHHHHHhccc--cchhheeeeEecCHHHHhhcchHHHHHHHHHhcccc-----------------------
Confidence 9999999999999875421 235588999999999999999999999998876321
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
..+|+++||||++..+..+....... +........
T Consensus 191 --------~~~q~ll~SATl~~~v~~l~~~~l~~------------------------p~~i~v~~~------------- 225 (572)
T PRK04537 191 --------GTRQTLLFSATLSHRVLELAYEHMNE------------------------PEKLVVETE------------- 225 (572)
T ss_pred --------cCceEEEEeCCccHHHHHHHHHHhcC------------------------CcEEEeccc-------------
Confidence 24699999999987665443211100 000000000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcEEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLV 549 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~II 549 (1493)
......+....+.+....+...+..++... ..++||
T Consensus 226 -------------------------------------------~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LV 262 (572)
T PRK04537 226 -------------------------------------------TITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMV 262 (572)
T ss_pred -------------------------------------------cccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEE
Confidence 000000111122223344555666666544 568999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHH
Q psy16310 550 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629 (1493)
Q Consensus 550 F~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yi 629 (1493)
||+++..|+.|+..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.++.+|+
T Consensus 263 F~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yv 342 (572)
T PRK04537 263 FVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYV 342 (572)
T ss_pred EeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 630 HRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 630 QR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
||+|||||+|..|.|++|+++.+...+..++
T Consensus 343 qRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~ 373 (572)
T PRK04537 343 HRIGRTARLGEEGDAISFACERYAMSLPDIE 373 (572)
T ss_pred hhhcccccCCCCceEEEEecHHHHHHHHHHH
Confidence 9999999999999999999988776655553
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-52 Score=521.36 Aligned_cols=353 Identities=33% Similarity=0.529 Sum_probs=290.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|.+++|++.++++|.++||..|||+|.++|| .+..++|+|++||||||||++|++|+++.+..
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~-~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~-------------- 70 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIP-HLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP-------------- 70 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh--------------
Confidence 458999999999999999999999999999999 45688999999999999999999999987742
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
...++++|||+||++||.|+++.+..+.... ++.+..++||.+...+...+..+
T Consensus 71 -------------------------~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~ 125 (629)
T PRK11634 71 -------------------------ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 (629)
T ss_pred -------------------------ccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCC
Confidence 1234689999999999999999999887664 79999999999999998888889
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
++|||+||++|.+++....+. ++++.+|||||||+|++++|...+..|+..+
T Consensus 126 ~~IVVgTPgrl~d~l~r~~l~---l~~l~~lVlDEAd~ml~~gf~~di~~Il~~l------------------------- 177 (629)
T PRK11634 126 PQIVVGTPGRLLDHLKRGTLD---LSKLSGLVLDEADEMLRMGFIEDVETIMAQI------------------------- 177 (629)
T ss_pred CCEEEECHHHHHHHHHcCCcc---hhhceEEEeccHHHHhhcccHHHHHHHHHhC-------------------------
Confidence 999999999999999876554 5589999999999999999999999998776
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1493)
+..+|+++||||+|..+..+...... .+..+.+..
T Consensus 178 --------p~~~q~llfSAT~p~~i~~i~~~~l~------------------------~~~~i~i~~------------- 212 (629)
T PRK11634 178 --------PEGHQTALFSATMPEAIRRITRRFMK------------------------EPQEVRIQS------------- 212 (629)
T ss_pred --------CCCCeEEEEEccCChhHHHHHHHHcC------------------------CCeEEEccC-------------
Confidence 34579999999999876544321110 000000000
Q ss_pred hhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcEE
Q psy16310 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTL 548 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~I 548 (1493)
.......+...++......|...|..++... ..++|
T Consensus 213 -------------------------------------------~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~I 249 (629)
T PRK11634 213 -------------------------------------------SVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAI 249 (629)
T ss_pred -------------------------------------------ccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEE
Confidence 0000001111122222334555666666554 46899
Q ss_pred EEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHH
Q psy16310 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628 (1493)
Q Consensus 549 IF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~y 628 (1493)
|||+|+..+..|+..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.++..|
T Consensus 250 VF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~y 329 (629)
T PRK11634 250 IFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESY 329 (629)
T ss_pred EEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 629 IHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 629 iQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
+||+|||||+|+.|.|++|+++.|...+..+
T Consensus 330 vqRiGRtGRaGr~G~ai~~v~~~e~~~l~~i 360 (629)
T PRK11634 330 VHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 (629)
T ss_pred HHHhccccCCCCcceEEEEechHHHHHHHHH
Confidence 9999999999999999999988776554444
|
|
| >KOG0334|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-53 Score=511.45 Aligned_cols=372 Identities=31% Similarity=0.532 Sum_probs=332.4
Q ss_pred hhhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCc
Q psy16310 762 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 841 (1493)
Q Consensus 762 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~ 841 (1493)
..+.++.+|.+.|++..++..++++||..|||||.+||| ++..|+|+|++|.||||||++|+||++.++.....
T Consensus 359 ~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP-~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~----- 432 (997)
T KOG0334|consen 359 ECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIP-AIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP----- 432 (997)
T ss_pred CCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcc-hhccCcceEEeeccCCccchhhhcchhhhhhcCCC-----
Confidence 356778999999999999999999999999999999999 67789999999999999999999999977754321
Q ss_pred ccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH
Q psy16310 842 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 921 (1493)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~ 921 (1493)
.....||.+||++|||+||.||++.++.|.+.+++++++++||.....|..
T Consensus 433 -----------------------------~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qia 483 (997)
T KOG0334|consen 433 -----------------------------LEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIA 483 (997)
T ss_pred -----------------------------hhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHH
Confidence 133558999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEeccccc
Q psy16310 922 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001 (1493)
Q Consensus 922 ~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~ 1001 (1493)
.+++++.|+||||||+++++-.+...+..+.++.++|+||||+|++++|.+++..|+..+ .+.+|+++||||+|.
T Consensus 484 elkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nl-----rpdrQtvlfSatfpr 558 (997)
T KOG0334|consen 484 ELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNL-----RPDRQTVLFSATFPR 558 (997)
T ss_pred HHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhc-----chhhhhhhhhhhhhH
Confidence 999999999999999999998777777788888899999999999999999999999998 478999999999998
Q ss_pred chHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEec-ccchhhHHHHHHHhC--CC
Q psy16310 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYLYYFILQH--PG 1078 (1493)
Q Consensus 1002 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~--~~ 1078 (1493)
.+....... +..|..+.+.........+.+....|. ..+|+..|..+|..+ .+
T Consensus 559 ~m~~la~~v------------------------l~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~ 614 (997)
T KOG0334|consen 559 SMEALARKV------------------------LKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDG 614 (997)
T ss_pred HHHHHHHHh------------------------hcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcC
Confidence 865544211 113333444444555667788888888 788999998888654 78
Q ss_pred cEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCCh
Q psy16310 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 1158 (1493)
Q Consensus 1079 ~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~ 1158 (1493)
++||||.....|+.+...|...|+.+..+||+.+|.+|..+++.|++|.+.+||||++++||+|++++.+|||||+|...
T Consensus 615 ~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~ 694 (997)
T KOG0334|consen 615 KTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHY 694 (997)
T ss_pred CEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhcc
Q psy16310 1159 EIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE 1197 (1493)
Q Consensus 1159 ~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~ 1197 (1493)
+.|+||+|||||+|+.|.|++|++|.+......|.+.+.
T Consensus 695 edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~ 733 (997)
T KOG0334|consen 695 EDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALE 733 (997)
T ss_pred HHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHH
Confidence 999999999999999999999999988888888888773
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=510.91 Aligned_cols=371 Identities=34% Similarity=0.534 Sum_probs=309.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
...|.+++|++.++++|.+.||..|||+|.++|+ .+..|+|+|++||||||||++|++|+++.++......
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~-~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~-------- 156 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLG-YTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK-------- 156 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccc--------
Confidence 3568899999999999999999999999999999 4668899999999999999999999999886532100
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc-C
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-K 925 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~-~ 925 (1493)
......+++|||+||++||.|+++.++.+.+..++++..++||.....+...+. .
T Consensus 157 ------------------------~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~ 212 (475)
T PRK01297 157 ------------------------ERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEAR 212 (475)
T ss_pred ------------------------ccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCC
Confidence 011234689999999999999999999999999999999999988877766664 5
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHh
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
.++|+|+||++|++++..+.. .+.++++|||||||++++++|...+..++..+.. ...+|+++||||++..+..
T Consensus 213 ~~~Iiv~TP~~Ll~~~~~~~~---~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~---~~~~q~i~~SAT~~~~~~~ 286 (475)
T PRK01297 213 FCDILVATPGRLLDFNQRGEV---HLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPR---KEERQTLLFSATFTDDVMN 286 (475)
T ss_pred CCCEEEECHHHHHHHHHcCCc---ccccCceEEechHHHHHhcccHHHHHHHHHhCCC---CCCceEEEEEeecCHHHHH
Confidence 689999999999998876553 4668899999999999999999999999887632 2357999999999876655
Q ss_pred HHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CCcEEEEe
Q psy16310 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFC 1084 (1493)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~ 1084 (1493)
..... ...+..+.+.........+.+....+...++...+..++... ..++||||
T Consensus 287 ~~~~~------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~ 342 (475)
T PRK01297 287 LAKQW------------------------TTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFA 342 (475)
T ss_pred HHHHh------------------------ccCCEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEe
Confidence 43221 112233333322223334445555566666777777766654 46899999
Q ss_pred cchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHH
Q psy16310 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164 (1493)
Q Consensus 1085 ~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr 1164 (1493)
+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+|++|.+..+|+||
T Consensus 343 ~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr 422 (475)
T PRK01297 343 NRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHR 422 (475)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1165 ~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
+||+||.|+.|.+++|+.++|...+..+.+.++..+
T Consensus 423 ~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 423 IGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred hCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998888888888877654
|
|
| >KOG0341|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-54 Score=458.95 Aligned_cols=358 Identities=30% Similarity=0.510 Sum_probs=297.9
Q ss_pred ccccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccC
Q psy16310 147 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 226 (1493)
Q Consensus 147 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~ 226 (1493)
+.++.+|.+...+..+++.|++.|+.+|||||.+-+| .++.|+|+|..|-||||||++|+||++-..+....
T Consensus 166 pPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlP-vvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~------- 237 (610)
T KOG0341|consen 166 PPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLP-VVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEM------- 237 (610)
T ss_pred CCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcc-eEeecCceeeEEeecCCceEEEeHHHHHHHHHHHh-------
Confidence 4567789999999999999999999999999999999 55689999999999999999999998755443211
Q ss_pred CCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcC------CCCeEEEEEEcCCCHH
Q psy16310 227 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK------YTPVKVACVVGGMSTE 300 (1493)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~------~~~i~v~~~~G~~~~~ 300 (1493)
+......-+|..||+||+|+||.|.+..+..+.. ...++..+..||.+..
T Consensus 238 ------------------------~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~ 293 (610)
T KOG0341|consen 238 ------------------------MLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVR 293 (610)
T ss_pred ------------------------cCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHH
Confidence 1122345678999999999999999988877643 2347888999999999
Q ss_pred HHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccC
Q psy16310 301 KQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380 (1493)
Q Consensus 301 ~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~ 380 (1493)
.+......+++|+|+|||||.++|......++ -+++|++||||+|+++||.+.++.|+..+.
T Consensus 294 eql~~v~~GvHivVATPGRL~DmL~KK~~sLd---~CRyL~lDEADRmiDmGFEddir~iF~~FK--------------- 355 (610)
T KOG0341|consen 294 EQLDVVRRGVHIVVATPGRLMDMLAKKIMSLD---ACRYLTLDEADRMIDMGFEDDIRTIFSFFK--------------- 355 (610)
T ss_pred HHHHHHhcCeeEEEcCcchHHHHHHHhhccHH---HHHHhhhhhHHHHhhccchhhHHHHHHHHh---------------
Confidence 99999999999999999999999988766554 689999999999999999999999998874
Q ss_pred CcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhcc
Q psy16310 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGI 460 (1493)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (1493)
..+|+++||||+|..+..+.+...-.+ ..+++...
T Consensus 356 ------------------~QRQTLLFSATMP~KIQ~FAkSALVKP------------------------vtvNVGRA--- 390 (610)
T KOG0341|consen 356 ------------------GQRQTLLFSATMPKKIQNFAKSALVKP------------------------VTVNVGRA--- 390 (610)
T ss_pred ------------------hhhheeeeeccccHHHHHHHHhhcccc------------------------eEEecccc---
Confidence 348999999999988877664322111 11111000
Q ss_pred ccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHH
Q psy16310 461 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 540 (1493)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 540 (1493)
....-.+.+...+.....|.-+|+.+|
T Consensus 391 -----------------------------------------------------GAAsldViQevEyVkqEaKiVylLeCL 417 (610)
T KOG0341|consen 391 -----------------------------------------------------GAASLDVIQEVEYVKQEAKIVYLLECL 417 (610)
T ss_pred -----------------------------------------------------cccchhHHHHHHHHHhhhhhhhHHHHh
Confidence 000000001111223456777888999
Q ss_pred hhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEec
Q psy16310 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620 (1493)
Q Consensus 541 ~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd 620 (1493)
.....++||||....++..+.++|-..|+.+..+||+-.|.+|...++.|+.|+..|||||||++.|+|+|++.||||||
T Consensus 418 QKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyD 497 (610)
T KOG0341|consen 418 QKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYD 497 (610)
T ss_pred ccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 621 ~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
+|..++.|+||+|||||.|+.|.+.+|++..-
T Consensus 498 MP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 498 MPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred ChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 99999999999999999999999999997753
|
|
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-52 Score=458.74 Aligned_cols=386 Identities=30% Similarity=0.463 Sum_probs=309.7
Q ss_pred HHHHHHHHCCCCCCcHHHHhhHHHhhc--------cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchh
Q psy16310 778 TIIRALYQKGFKTPTKIQSMVMPSALL--------ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLE 849 (1493)
Q Consensus 778 ~l~~~l~~~g~~~pt~iQ~~~i~~~l~--------~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~ 849 (1493)
.+.+.+..++++...|+|..++|.++. .++|+++.||||||||++|.|||++.+...
T Consensus 147 ~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R--------------- 211 (620)
T KOG0350|consen 147 TIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSR--------------- 211 (620)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccC---------------
Confidence 344559999999999999999997653 257999999999999999999999988432
Q ss_pred HHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcC-CC-
Q psy16310 850 EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK-CP- 927 (1493)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~-~~- 927 (1493)
..+..+||||+||++|+.|++.+|..+....++.|+.+.|..+.......|.. .+
T Consensus 212 -----------------------~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~ 268 (620)
T KOG0350|consen 212 -----------------------PVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPE 268 (620)
T ss_pred -----------------------CccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCc
Confidence 23447999999999999999999999999999999999998888777666653 33
Q ss_pred ---cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhccc--------------------
Q psy16310 928 ---HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT-------------------- 984 (1493)
Q Consensus 928 ---~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~-------------------- 984 (1493)
||+|+|||||.++|.... ...|.+++++||||||+|++..|..++..++..+...
T Consensus 269 ~~~DIlVaTPGRLVDHl~~~k--~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~ 346 (620)
T KOG0350|consen 269 CRIDILVATPGRLVDHLNNTK--SFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTV 346 (620)
T ss_pred cccceEEcCchHHHHhccCCC--CcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchh
Confidence 899999999999997522 2457899999999999999998888877776655321
Q ss_pred ---------CCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEecc----ccccccc
Q psy16310 985 ---------ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT----EKIGITK 1051 (1493)
Q Consensus 985 ---------~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~ 1051 (1493)
...++.+.++||||++..-.... .+.+..|..+.+. .....+.
T Consensus 347 ~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~------------------------~l~l~~Prl~~v~~~~~~ryslp~ 402 (620)
T KOG0350|consen 347 LSELLTKLGKLYPPLWKLVFSATLSQDPSKLK------------------------DLTLHIPRLFHVSKPLIGRYSLPS 402 (620)
T ss_pred hHHHHhhcCCcCchhHhhhcchhhhcChHHHh------------------------hhhcCCCceEEeecccceeeecCh
Confidence 00122345566666654333222 1233344433333 3455677
Q ss_pred cceeeEEEecccchhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHH----hcCCCccccccCCCHHHHHHHHHHHhcC
Q psy16310 1052 TLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLT----MLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126 (1493)
Q Consensus 1052 ~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~----~~~~~~~~lhg~m~~~~R~~~~~~F~~g 1126 (1493)
.+.+..+.+....+...++.++... ..++|+|+++.+.+.+++..|+ ..+..+..+.|++....|.+.++.|..|
T Consensus 403 ~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g 482 (620)
T KOG0350|consen 403 SLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKG 482 (620)
T ss_pred hhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcC
Confidence 7888888888888888888888766 5689999999999999999987 3356777899999999999999999999
Q ss_pred CCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCC
Q psy16310 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1206 (1493)
Q Consensus 1127 ~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p 1206 (1493)
.++||||||+++||||+.+|++|||||+|.+..+|+||+|||||+|+.|.||.++...+...|.++++........+..|
T Consensus 483 ~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~~d~~~i~~ 562 (620)
T KOG0350|consen 483 DINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNLWDGVEIQP 562 (620)
T ss_pred CceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcccCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988876666667
Q ss_pred CChHHHHHHHHHHHHHHHHHHHH
Q psy16310 1207 IDESVLSLIKKRIDLAKSIEYLE 1229 (1493)
Q Consensus 1207 ~~~~~~~~i~~~~~~~~~~~~~~ 1229 (1493)
++......... .+...++.+.
T Consensus 563 ~e~~~~~~~~~--~Yt~ALEsLk 583 (620)
T KOG0350|consen 563 IEYIFIKDEDD--RYTKALESLK 583 (620)
T ss_pred cCchHHHHHHH--HHHHHHHHHH
Confidence 66655554443 3344444444
|
|
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-52 Score=459.89 Aligned_cols=368 Identities=30% Similarity=0.504 Sum_probs=309.4
Q ss_pred ccccccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCc
Q psy16310 145 DMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 224 (1493)
Q Consensus 145 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~ 224 (1493)
.+..++..|+.++.+..|..++.+..|++|||+|.+++|.++ .|+|||..|.||||||.+|+.|++-|++...+-
T Consensus 217 s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptal-sgrdvigIAktgSgktaAfi~pm~~himdq~eL---- 291 (731)
T KOG0339|consen 217 SPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTAL-SGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPEL---- 291 (731)
T ss_pred CCCCCcchhhhcCchHHHHHHHhhhhcccCCccccccccccc-ccccchheeeccCcchhHHHHHHHHHhcchhhh----
Confidence 345667889999999999999999999999999999999666 679999999999999999999999999753211
Q ss_pred cCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHH
Q psy16310 225 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 304 (1493)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~ 304 (1493)
....+|.+||+||||+||.|++.+++++++..++++.+++||.+...|..
T Consensus 292 ------------------------------~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k 341 (731)
T KOG0339|consen 292 ------------------------------KPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSK 341 (731)
T ss_pred ------------------------------cCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHH
Confidence 22467899999999999999999999999999999999999999999999
Q ss_pred HhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcch
Q psy16310 305 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384 (1493)
Q Consensus 305 ~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~ 384 (1493)
.|..++.|||||||||++++.....+ ++++++|||||||+|+++||.+++..|...+
T Consensus 342 ~Lk~g~EivVaTPgRlid~VkmKatn---~~rvS~LV~DEadrmfdmGfe~qVrSI~~hi-------------------- 398 (731)
T KOG0339|consen 342 ELKEGAEIVVATPGRLIDMVKMKATN---LSRVSYLVLDEADRMFDMGFEPQVRSIKQHI-------------------- 398 (731)
T ss_pred hhhcCCeEEEechHHHHHHHHhhccc---ceeeeEEEEechhhhhccccHHHHHHHHhhc--------------------
Confidence 99999999999999999999866554 5589999999999999999999999999887
Q ss_pred hhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhcccccc
Q psy16310 385 LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTL 464 (1493)
Q Consensus 385 ~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (1493)
.+.+|+++||||++..+..+++-...-+. ..+...++
T Consensus 399 -------------rpdrQtllFsaTf~~kIe~lard~L~dpV-------------------------rvVqg~vg----- 435 (731)
T KOG0339|consen 399 -------------RPDRQTLLFSATFKKKIEKLARDILSDPV-------------------------RVVQGEVG----- 435 (731)
T ss_pred -------------CCcceEEEeeccchHHHHHHHHHHhcCCe-------------------------eEEEeehh-----
Confidence 56689999999999887766542211000 00000000
Q ss_pred chhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccc-ccCchhhHHHHHHhhC
Q psy16310 465 TESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILC-KHDEKDSYLYYFILQH 543 (1493)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~ 543 (1493)
.-...+.+...+| ....|+..|..-|...
T Consensus 436 --------------------------------------------------ean~dITQ~V~V~~s~~~Kl~wl~~~L~~f 465 (731)
T KOG0339|consen 436 --------------------------------------------------EANEDITQTVSVCPSEEKKLNWLLRHLVEF 465 (731)
T ss_pred --------------------------------------------------ccccchhheeeeccCcHHHHHHHHHHhhhh
Confidence 0000111122222 2344566666555544
Q ss_pred --CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecC
Q psy16310 544 --PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 621 (1493)
Q Consensus 544 --~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~ 621 (1493)
.+++|||+.-..+++.++..|...++.+..+||+|.|.+|.+++..|+.+...|||+|||++||+|||.+..||+||+
T Consensus 466 ~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ 545 (731)
T KOG0339|consen 466 SSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDF 545 (731)
T ss_pred ccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccc
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhhhh
Q psy16310 622 PRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQE 663 (1493)
Q Consensus 622 P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~~ 663 (1493)
-.++..|.||+|||||+|..|.+|+|+++.|..+.-.|-+..
T Consensus 546 ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnL 587 (731)
T KOG0339|consen 546 ARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNL 587 (731)
T ss_pred cchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHH
Confidence 999999999999999999999999999999988777764433
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=504.71 Aligned_cols=357 Identities=31% Similarity=0.510 Sum_probs=291.3
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccc
Q psy16310 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 231 (1493)
+|+++++++.+++.|..+||..|+++|.++||. +..|+|++++||||||||++|++|+++++.....
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~-~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~------------ 68 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPP-ALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR------------ 68 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc------------
Confidence 589999999999999999999999999999995 4578999999999999999999999998864210
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCC
Q psy16310 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311 (1493)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~ 311 (1493)
....++++|||+||++||.|+++.+..++...++++..++|+.....+...+..+++
T Consensus 69 -----------------------~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~ 125 (434)
T PRK11192 69 -----------------------RKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQD 125 (434)
T ss_pred -----------------------cCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCC
Confidence 112346899999999999999999999999999999999999999888888888899
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1493)
|+|+||++|++++....+. +.++++|||||||+|++++|...+..+...+
T Consensus 126 IlV~Tp~rl~~~~~~~~~~---~~~v~~lViDEah~~l~~~~~~~~~~i~~~~--------------------------- 175 (434)
T PRK11192 126 IVVATPGRLLQYIKEENFD---CRAVETLILDEADRMLDMGFAQDIETIAAET--------------------------- 175 (434)
T ss_pred EEEEChHHHHHHHHcCCcC---cccCCEEEEECHHHHhCCCcHHHHHHHHHhC---------------------------
Confidence 9999999999999876554 4578999999999999999999998887654
Q ss_pred ccccCCCCCceEEEEeeccchh-hhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 392 VTMTETSQPRQTFVFSATLTHS-LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 392 ~~~~~~~~~~q~il~SATl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
+...|+++||||++.. +..+..... ..+..+....
T Consensus 176 ------~~~~q~~~~SAT~~~~~~~~~~~~~~------------------------~~~~~i~~~~-------------- 211 (434)
T PRK11192 176 ------RWRKQTLLFSATLEGDAVQDFAERLL------------------------NDPVEVEAEP-------------- 211 (434)
T ss_pred ------ccccEEEEEEeecCHHHHHHHHHHHc------------------------cCCEEEEecC--------------
Confidence 2346999999999743 322221000 0000000000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccc-cCchhhHHHHHHhh-CCCcEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYLYYFILQ-HPGRTL 548 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~-~~~~~I 548 (1493)
.......+......+. ...+...+..++.. ...++|
T Consensus 212 ------------------------------------------~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~l 249 (434)
T PRK11192 212 ------------------------------------------SRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSI 249 (434)
T ss_pred ------------------------------------------CcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEE
Confidence 0000000111111111 23466667777765 457999
Q ss_pred EEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHH
Q psy16310 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628 (1493)
Q Consensus 549 IF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~y 628 (1493)
|||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.+...|
T Consensus 250 VF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~y 329 (434)
T PRK11192 250 VFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTY 329 (434)
T ss_pred EEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 629 IHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 629 iQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
+||+|||||+|..|.|++|++..|...+.++.
T Consensus 330 iqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~ 361 (434)
T PRK11192 330 LHRIGRTGRAGRKGTAISLVEAHDHLLLGKIE 361 (434)
T ss_pred hhcccccccCCCCceEEEEecHHHHHHHHHHH
Confidence 99999999999999999999988877766654
|
|
| >KOG0337|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=456.96 Aligned_cols=362 Identities=36% Similarity=0.550 Sum_probs=329.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
..|..+||+..+++++.+-||..|||+|+++|| .+..++|++..|-||||||.||++|+++++...
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTip-liLe~~dvv~martgsgktaaf~ipm~e~Lk~~------------- 86 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIP-LILEGRDVVGMARTGSGKTAAFLIPMIEKLKSH------------- 86 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhccccc-ceeeccccceeeecCCcchhhHHHHHHHHHhhc-------------
Confidence 458999999999999999999999999999999 566899999999999999999999999988432
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~ 927 (1493)
...+.+++|++|||+||.|..+.++.++++.++++.+++||.+.++|+..+..++
T Consensus 87 -------------------------s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~np 141 (529)
T KOG0337|consen 87 -------------------------SQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENP 141 (529)
T ss_pred -------------------------cccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCC
Confidence 2456789999999999999999999999999999999999999999999999999
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
|||++|||++..+..... ..|+.+.|+||||||+++++||.+++..++.++ +..+|+++||||+|+.+..+.
T Consensus 142 Dii~ATpgr~~h~~vem~---l~l~sveyVVfdEadrlfemgfqeql~e~l~rl-----~~~~QTllfSatlp~~lv~fa 213 (529)
T KOG0337|consen 142 DIIIATPGRLLHLGVEMT---LTLSSVEYVVFDEADRLFEMGFQEQLHEILSRL-----PESRQTLLFSATLPRDLVDFA 213 (529)
T ss_pred CEEEecCceeeeeehhee---ccccceeeeeehhhhHHHhhhhHHHHHHHHHhC-----CCcceEEEEeccCchhhHHHH
Confidence 999999999987665433 346789999999999999999999999999998 467899999999998876654
Q ss_pred hhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCC--cEEEEec
Q psy16310 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG--RTLVFCN 1085 (1493)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~--~~IVF~~ 1085 (1493)
. .++.+|..+.+.-...+...+...+..+...+|..+|..++....+ +++|||.
T Consensus 214 k------------------------aGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~ 269 (529)
T KOG0337|consen 214 K------------------------AGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVA 269 (529)
T ss_pred H------------------------ccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEec
Confidence 2 2455666666666666777788888899999999999999987755 8999999
Q ss_pred chhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHH
Q psy16310 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165 (1493)
Q Consensus 1086 s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~ 1165 (1493)
|..+|+.+...|...|+.+..++|.|.+..|...+..|+.++..+||.||+++||+|||-.+.|||||+|.+...|+||+
T Consensus 270 tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRV 349 (529)
T KOG0337|consen 270 TKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRV 349 (529)
T ss_pred ccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1166 GRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1166 GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
||++|+|+.|.+|.||.+.+.+++..+...+++.+
T Consensus 350 gr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~ 384 (529)
T KOG0337|consen 350 GRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPL 384 (529)
T ss_pred cchhhccccceEEEEEecccchhhhhhhhhcCCce
Confidence 99999999999999999999999999998888864
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=493.04 Aligned_cols=363 Identities=34% Similarity=0.538 Sum_probs=289.3
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
...|.+++|++.++++|.+.||..|+++|.++|+ .+..|+|+|+++|||||||++|++|+++.+.......
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~-~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~-------- 156 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLG-YTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK-------- 156 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccc--------
Confidence 3568889999999999999999999999999998 5668899999999999999999999999886532110
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc-C
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-K 308 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~-~ 308 (1493)
......+++|||+||++||.|+++.+..+....++.+..++||.+...+...+. .
T Consensus 157 ------------------------~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~ 212 (475)
T PRK01297 157 ------------------------ERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEAR 212 (475)
T ss_pred ------------------------ccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCC
Confidence 001124689999999999999999999999888999999999988777766654 5
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
.++|+|+||++|++++..... .|.++++|||||||++++++|...+..++..+..
T Consensus 213 ~~~Iiv~TP~~Ll~~~~~~~~---~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~---------------------- 267 (475)
T PRK01297 213 FCDILVATPGRLLDFNQRGEV---HLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPR---------------------- 267 (475)
T ss_pred CCCEEEECHHHHHHHHHcCCc---ccccCceEEechHHHHHhcccHHHHHHHHHhCCC----------------------
Confidence 689999999999998876544 3568999999999999999999999888876531
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
...+|++++|||++..+..+...... .+....+....
T Consensus 268 ---------~~~~q~i~~SAT~~~~~~~~~~~~~~------------------------~~~~v~~~~~~---------- 304 (475)
T PRK01297 268 ---------KEERQTLLFSATFTDDVMNLAKQWTT------------------------DPAIVEIEPEN---------- 304 (475)
T ss_pred ---------CCCceEEEEEeecCHHHHHHHHHhcc------------------------CCEEEEeccCc----------
Confidence 12369999999998766554321110 00000000000
Q ss_pred hhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcE
Q psy16310 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRT 547 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~ 547 (1493)
............+....+...+..++... ..++
T Consensus 305 ----------------------------------------------~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 338 (475)
T PRK01297 305 ----------------------------------------------VASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERV 338 (475)
T ss_pred ----------------------------------------------CCCCcccEEEEEecchhHHHHHHHHHHhcCCCeE
Confidence 00000011111222334555666666544 3689
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||||+|++||+||+|.++.+
T Consensus 339 IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~ 418 (475)
T PRK01297 339 MVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDD 418 (475)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
|+||+|||||.|..|.+++|++++|...+..+
T Consensus 419 y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~ 450 (475)
T PRK01297 419 YVHRIGRTGRAGASGVSISFAGEDDAFQLPEI 450 (475)
T ss_pred HHHhhCccCCCCCCceEEEEecHHHHHHHHHH
Confidence 99999999999999999999998876554444
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=484.75 Aligned_cols=360 Identities=27% Similarity=0.466 Sum_probs=299.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
..+|+++++++.++++|...||..|+|+|.++|+. +..|+|++++||||||||++|++|+++.+..
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~-i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~------------- 92 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKP-ILDGYDTIGQAQSGTGKTATFVIAALQLIDY------------- 92 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhCCCCEEEECCCCChHHHHHHHHHHHHhcC-------------
Confidence 46799999999999999999999999999999995 5578999999999999999999999987621
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
...+.++|||+||++||.|+.+.+..++...++.+..++||.....+...+..+
T Consensus 93 --------------------------~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 146 (401)
T PTZ00424 93 --------------------------DLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAG 146 (401)
T ss_pred --------------------------CCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCC
Confidence 123467999999999999999999999888889999999999888888888888
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|+|+||++|.+++..+.. .+.++++||+||||++++++|...+..++..+ +...|++++|||+++.+...
T Consensus 147 ~~Ivv~Tp~~l~~~l~~~~~---~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~-----~~~~~~i~~SAT~~~~~~~~ 218 (401)
T PTZ00424 147 VHMVVGTPGRVYDMIDKRHL---RVDDLKLFILDEADEMLSRGFKGQIYDVFKKL-----PPDVQVALFSATMPNEILEL 218 (401)
T ss_pred CCEEEECcHHHHHHHHhCCc---ccccccEEEEecHHHHHhcchHHHHHHHHhhC-----CCCcEEEEEEecCCHHHHHH
Confidence 99999999999999986653 36689999999999999999988888888776 46789999999999765543
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecc-cchhhHHHHHHHh-CCCcEEEEe
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQ-HPGRTLVFC 1084 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~-~~~~~IVF~ 1084 (1493)
..... ..+..+...........+.+.+..+.. ..+...+..++.. ...++||||
T Consensus 219 ~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~ 274 (401)
T PTZ00424 219 TTKFM------------------------RDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYC 274 (401)
T ss_pred HHHHc------------------------CCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 32111 111111111111122334444444433 2233444444443 356899999
Q ss_pred cchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHH
Q psy16310 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164 (1493)
Q Consensus 1085 ~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr 1164 (1493)
+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|.+...|+||
T Consensus 275 ~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr 354 (401)
T PTZ00424 275 NTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHR 354 (401)
T ss_pred cCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCCeEEEEecCCCHHHHHHHHHhccc
Q psy16310 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198 (1493)
Q Consensus 1165 ~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~ 1198 (1493)
+||+||.|+.|.|++|+++.+...+.++.+.+..
T Consensus 355 ~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~ 388 (401)
T PTZ00424 355 IGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNT 388 (401)
T ss_pred ccccccCCCCceEEEEEcHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999988888777654
|
|
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=441.36 Aligned_cols=359 Identities=27% Similarity=0.472 Sum_probs=315.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
.+|++++|.+.|++.++..||++|+.||+.||+.++ .|.|+++++++|+|||.+|.+++++.+.-
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i-~G~dv~~qaqsgTgKt~af~i~iLq~iD~-------------- 90 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCI-KGHDVIAQAQSGTGKTAAFLISILQQIDM-------------- 90 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccc-cCCceeEeeeccccchhhhHHHHHhhcCc--------------
Confidence 479999999999999999999999999999998655 77999999999999999999999988732
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH-HhcCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR-ILNKC 926 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~-~l~~~ 926 (1493)
.....+|++++||||||.|+......++...+.++..++||.+...+.. .....
T Consensus 91 -------------------------~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~ 145 (397)
T KOG0327|consen 91 -------------------------SVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDK 145 (397)
T ss_pred -------------------------chHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccC
Confidence 1233469999999999999999999999999999999999988775444 44456
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|+|+|||++.+.+..+.+. ...++++|+||||.|+..||.+++..|+..+ +...|++++|||+|.++...
T Consensus 146 ~hivvGTpgrV~dml~~~~l~---~~~iKmfvlDEaDEmLs~gfkdqI~~if~~l-----p~~vQv~l~SAT~p~~vl~v 217 (397)
T KOG0327|consen 146 PHIVVGTPGRVFDMLNRGSLS---TDGIKMFVLDEADEMLSRGFKDQIYDIFQEL-----PSDVQVVLLSATMPSDVLEV 217 (397)
T ss_pred ceeecCCchhHHHhhcccccc---ccceeEEeecchHhhhccchHHHHHHHHHHc-----CcchhheeecccCcHHHHHH
Confidence 899999999999999877432 4469999999999999999999999999998 47789999999999887665
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecc
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS 1086 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s 1086 (1493)
...+ ...|..+.+.........+.+.++......|...|..+.. .-.+.+|||||
T Consensus 218 t~~f------------------------~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~-~~~q~~if~nt 272 (397)
T KOG0327|consen 218 TKKF------------------------MREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR-RVTQAVIFCNT 272 (397)
T ss_pred HHHh------------------------ccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH-hhhcceEEecc
Confidence 4322 2234444444444556777888888877788888888877 66789999999
Q ss_pred hhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHh
Q psy16310 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 1166 (1493)
Q Consensus 1087 ~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~G 1166 (1493)
++.+..+...|...+..+..+||+|.+.+|..++..|++|..+|||.|+.++||+|+.++..||||++|...++|+||+|
T Consensus 273 ~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~g 352 (397)
T KOG0327|consen 273 RRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIG 352 (397)
T ss_pred hhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCeEEEEecCCCHHHHHHHHHhcccc
Q psy16310 1167 RTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1167 R~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~ 1199 (1493)
|+||.|++|.++.+++..+...++++.+.+.-.
T Consensus 353 r~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~ 385 (397)
T KOG0327|consen 353 RAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTP 385 (397)
T ss_pred cccccCCCceeeeeehHhhHHHHHhHHHhcCCc
Confidence 999999999999999999999999998876643
|
|
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=433.23 Aligned_cols=354 Identities=25% Similarity=0.451 Sum_probs=282.2
Q ss_pred CcccccccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcc-CCcEEEEccCCCchhHHHHHHHHHHHHhhccCC
Q psy16310 143 NEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 221 (1493)
Q Consensus 143 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~ 221 (1493)
...+..+..+|++|+|+|+++++++.++|.+|+.||..++|.+|.. .+|+|.++..|+|||.+|+|.+|.++..
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~----- 156 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP----- 156 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc-----
Confidence 4456777889999999999999999999999999999999955543 6899999999999999999999987732
Q ss_pred CCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHH
Q psy16310 222 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK 301 (1493)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~ 301 (1493)
....|.++.|+|||+||.|+.+++.+++++.++.+....-+.....
T Consensus 157 ----------------------------------~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~r 202 (477)
T KOG0332|consen 157 ----------------------------------DVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKR 202 (477)
T ss_pred ----------------------------------cccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccccc
Confidence 2345679999999999999999999999999888887776542111
Q ss_pred HHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhc-CChhhHHHHHHhhccccCCCccccccccC
Q psy16310 302 QLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTMIESG 380 (1493)
Q Consensus 302 ~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~-~~~~~l~~il~~l~~~~~~~~~~~~~~~~ 380 (1493)
- ..+ ..+|+|+|||.+.+++.. +....+..+..+|+||||.|++. ||.++-..|+..+
T Consensus 203 G-~~i--~eqIviGTPGtv~Dlm~k--lk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~l---------------- 261 (477)
T KOG0332|consen 203 G-NKL--TEQIVIGTPGTVLDLMLK--LKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSL---------------- 261 (477)
T ss_pred C-Ccc--hhheeeCCCccHHHHHHH--HHhhChhhceEEEecchhhhhhcccccccchhhhhhc----------------
Confidence 0 001 137999999999999874 23334668999999999999976 6888877777655
Q ss_pred CcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhcc
Q psy16310 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGI 460 (1493)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (1493)
++..|+++||||....+..++...... +....+
T Consensus 262 -----------------P~~~QllLFSATf~e~V~~Fa~kivpn------------------------~n~i~L------ 294 (477)
T KOG0332|consen 262 -----------------PRNQQLLLFSATFVEKVAAFALKIVPN------------------------ANVIIL------ 294 (477)
T ss_pred -----------------CCcceEEeeechhHHHHHHHHHHhcCC------------------------Cceeee------
Confidence 456799999999988877665322111 111100
Q ss_pred ccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccccc-CchhhHHHHH
Q psy16310 461 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYF 539 (1493)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~ 539 (1493)
.+..-....+.+.++.|.. +.|...|.++
T Consensus 295 --------------------------------------------------k~eel~L~~IkQlyv~C~~~~~K~~~l~~l 324 (477)
T KOG0332|consen 295 --------------------------------------------------KREELALDNIKQLYVLCACRDDKYQALVNL 324 (477)
T ss_pred --------------------------------------------------ehhhccccchhhheeeccchhhHHHHHHHH
Confidence 0000111223344445543 4566666664
Q ss_pred HhhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE
Q psy16310 540 ILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618 (1493)
Q Consensus 540 l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~ 618 (1493)
.... -++.||||.|+.+|.+|+..|...|..+..+||+|+..+|..++++||.|..+|||+|+|++||||++.|++|||
T Consensus 325 yg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN 404 (477)
T KOG0332|consen 325 YGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN 404 (477)
T ss_pred HhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe
Confidence 3322 378999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC------CChHHHHHHHhccccCCCCCeEEEEecCCcc
Q psy16310 619 YHVP------RTSEIYIHRSGRTARANNEGLTVVLIESDEI 653 (1493)
Q Consensus 619 yd~P------~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~ 653 (1493)
||+| .+.+.|+||+|||||.|+.|.++.|+..++-
T Consensus 405 ydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s 445 (477)
T KOG0332|consen 405 YDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDS 445 (477)
T ss_pred cCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCc
Confidence 9999 5689999999999999999999999987653
|
|
| >KOG0334|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=492.98 Aligned_cols=366 Identities=31% Similarity=0.526 Sum_probs=315.5
Q ss_pred ccccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccC
Q psy16310 147 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 226 (1493)
Q Consensus 147 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~ 226 (1493)
+.++.+|.+.|++..++..++++||.+|+|||.+||| ++..|+|||++|.||||||++|+||++.|+.-.+..
T Consensus 361 pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP-~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~------ 433 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIP-AIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPL------ 433 (997)
T ss_pred CcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcc-hhccCcceEEeeccCCccchhhhcchhhhhhcCCCh------
Confidence 5667899999999999999999999999999999999 777999999999999999999999999887542211
Q ss_pred CCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHh
Q psy16310 227 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 306 (1493)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l 306 (1493)
....||.+|||+|||+||.||++.+..+...+++.+.+++|++....+...+
T Consensus 434 ----------------------------~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiael 485 (997)
T KOG0334|consen 434 ----------------------------EEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAEL 485 (997)
T ss_pred ----------------------------hhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHH
Confidence 1234899999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
..++.|+|||||+.++++..++.....|.++.+||+||||+|++++|.+++..|++++
T Consensus 486 kRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nl---------------------- 543 (997)
T KOG0334|consen 486 KRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNL---------------------- 543 (997)
T ss_pred hcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhc----------------------
Confidence 9999999999999999998888888888888899999999999999999999999887
Q ss_pred hhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccch
Q psy16310 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 466 (1493)
Q Consensus 387 ~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1493)
.+.+|+++||||+|..+..+.+-... .|..+.
T Consensus 544 -----------rpdrQtvlfSatfpr~m~~la~~vl~------------------------~Pveii------------- 575 (997)
T KOG0334|consen 544 -----------RPDRQTVLFSATFPRSMEALARKVLK------------------------KPVEII------------- 575 (997)
T ss_pred -----------chhhhhhhhhhhhhHHHHHHHHHhhc------------------------CCeeEE-------------
Confidence 45589999999999887665432111 000000
Q ss_pred hhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccc-cCchhhHHHHHHhhC--
Q psy16310 467 SKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYLYYFILQH-- 543 (1493)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~-- 543 (1493)
..........+.....+|. .+.|+..|..+|...
T Consensus 576 -------------------------------------------v~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e 612 (997)
T KOG0334|consen 576 -------------------------------------------VGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYE 612 (997)
T ss_pred -------------------------------------------EccceeEeccceEEEEEecCchHHHHHHHHHHHHHhh
Confidence 0001111223334445555 677888888887654
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCC
Q psy16310 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 623 (1493)
Q Consensus 544 ~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~ 623 (1493)
.+++||||.....|..+.+-|...|+.+..+||+.++.+|..+++.|++|.+++||||++++||+|++++.+|||||+|.
T Consensus 613 ~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pn 692 (997)
T KOG0334|consen 613 DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPN 692 (997)
T ss_pred cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccch
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 624 TSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 624 s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
...+|+||+|||||+|+.|.|++|+++.+......|.
T Consensus 693 h~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~ 729 (997)
T KOG0334|consen 693 HYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLC 729 (997)
T ss_pred hHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHH
Confidence 9999999999999999999999999997776655553
|
|
| >KOG0337|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-50 Score=435.03 Aligned_cols=356 Identities=37% Similarity=0.556 Sum_probs=305.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
..|..+||+..+.+++.+.||..|||+|+.+|| .+++++|++..|.||||||.+|++|+++++...
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTip-liLe~~dvv~martgsgktaaf~ipm~e~Lk~~------------- 86 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIP-LILEGRDVVGMARTGSGKTAAFLIPMIEKLKSH------------- 86 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhccccc-ceeeccccceeeecCCcchhhHHHHHHHHHhhc-------------
Confidence 468889999999999999999999999999999 666899999999999999999999999988542
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~ 310 (1493)
...+.++++++|||+||.|..++.+.++++++++..+++||....+++..+..++
T Consensus 87 -------------------------s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~np 141 (529)
T KOG0337|consen 87 -------------------------SQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENP 141 (529)
T ss_pred -------------------------cccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCC
Confidence 1356789999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
|||++|||++..+.-.-. + .|+.+.+|||||||+++++||.+++..++.+++
T Consensus 142 Dii~ATpgr~~h~~vem~--l-~l~sveyVVfdEadrlfemgfqeql~e~l~rl~------------------------- 193 (529)
T KOG0337|consen 142 DIIIATPGRLLHLGVEMT--L-TLSSVEYVVFDEADRLFEMGFQEQLHEILSRLP------------------------- 193 (529)
T ss_pred CEEEecCceeeeeehhee--c-cccceeeeeehhhhHHHhhhhHHHHHHHHHhCC-------------------------
Confidence 999999999976544222 2 377899999999999999999999999999883
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
..+|+++||||+|..+..+.+... ..|..+
T Consensus 194 --------~~~QTllfSatlp~~lv~fakaGl------------------------~~p~lV------------------ 223 (529)
T KOG0337|consen 194 --------ESRQTLLFSATLPRDLVDFAKAGL------------------------VPPVLV------------------ 223 (529)
T ss_pred --------CcceEEEEeccCchhhHHHHHccC------------------------CCCceE------------------
Confidence 446999999999987766543111 001000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCC--cEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG--RTL 548 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~--~~I 548 (1493)
.+--...+...+......+....|..+|+.++....+ +++
T Consensus 224 --------------------------------------Rldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~ 265 (529)
T KOG0337|consen 224 --------------------------------------RLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTI 265 (529)
T ss_pred --------------------------------------EeehhhhcchhhhhheeeeccHHHHHHHHHHHhcccccccee
Confidence 0000111112223334456677888888888887754 899
Q ss_pred EEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHH
Q psy16310 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628 (1493)
Q Consensus 549 IF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~y 628 (1493)
|||.|...++.+...|...|+.+..++|.|.+..|...+..|+.++..+||.||+++||+|||..+.|||||+|.+..-|
T Consensus 266 vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klF 345 (529)
T KOG0337|consen 266 VFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLF 345 (529)
T ss_pred EEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 629 IHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 629 iQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
+||+||++|+|+.|.+|.|+.+.|.++...+..
T Consensus 346 vhRVgr~aragrtg~aYs~V~~~~~~yl~DL~l 378 (529)
T KOG0337|consen 346 VHRVGRVARAGRTGRAYSLVASTDDPYLLDLQL 378 (529)
T ss_pred EEEecchhhccccceEEEEEecccchhhhhhhh
Confidence 999999999999999999999999988776643
|
|
| >KOG4284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=447.87 Aligned_cols=359 Identities=25% Similarity=0.439 Sum_probs=302.8
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccC
Q psy16310 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 844 (1493)
Q Consensus 765 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~ 844 (1493)
.....|+++.|...++..|+..||..||+||..|||. ...+.|+|++|..|+|||++|.+.+++.+..
T Consensus 22 ~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~-~~~kmDliVQaKSGTGKTlVfsv~av~sl~~----------- 89 (980)
T KOG4284|consen 22 NCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPA-IFSKMDLIVQAKSGTGKTLVFSVLAVESLDS----------- 89 (980)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhh-hhcccceEEEecCCCCceEEEEeeeehhcCc-----------
Confidence 3446789999999999999999999999999999994 5577899999999999999999998876632
Q ss_pred CcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCC-CCcEEEEEEcCCCHHHHHHHh
Q psy16310 845 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY-TPVKVACVVGGMSTEKQLRIL 923 (1493)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~-~~~~v~~~~gg~~~~~~~~~l 923 (1493)
....++++||+||||+|.||..++..++.. .++++.+++||+........+
T Consensus 90 ----------------------------~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl 141 (980)
T KOG4284|consen 90 ----------------------------RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL 141 (980)
T ss_pred ----------------------------ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh
Confidence 244568999999999999999999999865 589999999999888777666
Q ss_pred cCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhcc-CCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 924 ~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~-~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
+. ++|+||||||+..++..+.++ ..+++++||||||.|++ ..|..++..|+..| |..+|++.||||.|..
T Consensus 142 k~-~rIvIGtPGRi~qL~el~~~n---~s~vrlfVLDEADkL~~t~sfq~~In~ii~sl-----P~~rQv~a~SATYp~n 212 (980)
T KOG4284|consen 142 KQ-TRIVIGTPGRIAQLVELGAMN---MSHVRLFVLDEADKLMDTESFQDDINIIINSL-----PQIRQVAAFSATYPRN 212 (980)
T ss_pred hh-ceEEecCchHHHHHHHhcCCC---ccceeEEEeccHHhhhchhhHHHHHHHHHHhc-----chhheeeEEeccCchh
Confidence 54 589999999999999887754 55899999999999998 67889999999988 5789999999999988
Q ss_pred hHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEeccc--------chhhHHHHHHH
Q psy16310 1003 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD--------EKDSYLYYFIL 1074 (1493)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~k~~~l~~~l~ 1074 (1493)
+.+.+... +.+|.++.+.......-.+.++++..... .|...|-.+..
T Consensus 213 Ldn~Lsk~------------------------mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~ 268 (980)
T KOG4284|consen 213 LDNLLSKF------------------------MRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFK 268 (980)
T ss_pred HHHHHHHH------------------------hcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHh
Confidence 88776432 34566666665555555666665544332 23334444444
Q ss_pred hCC-CcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEec
Q psy16310 1075 QHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153 (1493)
Q Consensus 1075 ~~~-~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d 1153 (1493)
.-+ .+.||||+....|+.++..|...|+.|.++.|.|+|.+|..+++.++.-.++|||+||..+||||-|+|++|||.|
T Consensus 269 ~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD 348 (980)
T KOG4284|consen 269 SIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNID 348 (980)
T ss_pred hCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecC
Confidence 333 4799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHhccCCCCCCCeEEEEecCCCH-HHHHHHHHhc
Q psy16310 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEI-PLYIKMFNSL 1196 (1493)
Q Consensus 1154 ~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~-~~~~~~~~~~ 1196 (1493)
+|.+.++|+||||||||.|..|.+++|+...+. ..|..+...+
T Consensus 349 ~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m~~ri 392 (980)
T KOG4284|consen 349 APADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAMAYRI 392 (980)
T ss_pred CCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHHHHHH
Confidence 999999999999999999999999999977643 5555553333
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-48 Score=470.68 Aligned_cols=355 Identities=28% Similarity=0.484 Sum_probs=284.6
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
..+|+++++++.+.+++.+.||..|+|+|.++|+ .+..++|++++||||||||++|++|+++++..
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~-~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~------------- 92 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIK-PILDGYDTIGQAQSGTGKTATFVIAALQLIDY------------- 92 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHH-HHhCCCCEEEECCCCChHHHHHHHHHHHHhcC-------------
Confidence 4679999999999999999999999999999998 56688999999999999999999999987631
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
...+.++|||+||++||.|+.+.+..++...++.+..++|+.....++..+..+
T Consensus 93 --------------------------~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 146 (401)
T PTZ00424 93 --------------------------DLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAG 146 (401)
T ss_pred --------------------------CCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCC
Confidence 123467999999999999999999999888888888999999888888888888
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
++|+|+||++|.+++...... +.++++|||||||++++.++...+..++..+
T Consensus 147 ~~Ivv~Tp~~l~~~l~~~~~~---l~~i~lvViDEah~~~~~~~~~~~~~i~~~~------------------------- 198 (401)
T PTZ00424 147 VHMVVGTPGRVYDMIDKRHLR---VDDLKLFILDEADEMLSRGFKGQIYDVFKKL------------------------- 198 (401)
T ss_pred CCEEEECcHHHHHHHHhCCcc---cccccEEEEecHHHHHhcchHHHHHHHHhhC-------------------------
Confidence 999999999999999866543 5589999999999999999888887777654
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1493)
+...|++++|||+++.+.......... +.......
T Consensus 199 --------~~~~~~i~~SAT~~~~~~~~~~~~~~~------------------------~~~~~~~~------------- 233 (401)
T PTZ00424 199 --------PPDVQVALFSATMPNEILELTTKFMRD------------------------PKRILVKK------------- 233 (401)
T ss_pred --------CCCcEEEEEEecCCHHHHHHHHHHcCC------------------------CEEEEeCC-------------
Confidence 345799999999987654432211000 00000000
Q ss_pred hhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccc-cCchhhHHHHHHhh-CCCcE
Q psy16310 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYLYYFILQ-HPGRT 547 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~-~~~~~ 547 (1493)
... ...........+. ...+...+...+.. ...++
T Consensus 234 ----~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (401)
T PTZ00424 234 ----DEL---------------------------------------TLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQA 270 (401)
T ss_pred ----CCc---------------------------------------ccCCceEEEEecChHHHHHHHHHHHHHhcCCCeE
Confidence 000 0000000000000 01122233333332 24689
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.+...
T Consensus 271 ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~ 350 (401)
T PTZ00424 271 IIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPEN 350 (401)
T ss_pred EEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|+||+|||||.|+.|.|++|+++++...+..++
T Consensus 351 y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e 383 (401)
T PTZ00424 351 YIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIE 383 (401)
T ss_pred EeecccccccCCCCceEEEEEcHHHHHHHHHHH
Confidence 999999999999999999999998888776663
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=485.43 Aligned_cols=372 Identities=21% Similarity=0.232 Sum_probs=268.9
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHH
Q psy16310 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 853 (1493)
Q Consensus 774 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 853 (1493)
.+++.+.++|.+.||+.|||+|.++|| .+..|+|+++++|||||||+||++|+++.+..
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~-~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-------------------- 78 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAE-LAHAGRHVVVATGTASGKSLAYQLPVLSALAD-------------------- 78 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHH-HHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh--------------------
Confidence 388999999999999999999999999 45688999999999999999999999998743
Q ss_pred HHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEEC
Q psy16310 854 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933 (1493)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~T 933 (1493)
.++.++|||+||||||.|+.+.++.++ ..++++..+.|+.+.. +...+..+++|+|+|
T Consensus 79 --------------------~~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtT 136 (742)
T TIGR03817 79 --------------------DPRATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTN 136 (742)
T ss_pred --------------------CCCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEC
Confidence 134589999999999999999999987 4578888888887754 445566678999999
Q ss_pred cHHHHHHHHhCcC-ccccccceeEEEecccchhccCCChhHHHHHHHHhccc--CCCCCceEEEEecccccchHhHHhhh
Q psy16310 934 PGRLWEFIQLGHF-HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT--ETSQPRQTFVFSATLTHSLKNSLNLK 1010 (1493)
Q Consensus 934 P~rl~~~l~~~~~-~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~--~~~~~~q~ll~SATl~~~~~~~~~~~ 1010 (1493)
|++|...+..... ....+.++++|||||||.|.+ .|...+..++.++... ..+..+|+++||||+++.... +...
T Consensus 137 Pd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~-~~~l 214 (742)
T TIGR03817 137 PDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAA-ASRL 214 (742)
T ss_pred hHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHH-HHHH
Confidence 9998754322111 112367899999999999876 4777777777766431 123568999999999976542 2211
Q ss_pred ccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhH
Q psy16310 1011 KGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 1090 (1493)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~ 1090 (1493)
.+... ..+ ..+........ ..+..+........ .... ........+...+..++ ....++||||+|++.|
T Consensus 215 ~g~~~-~~i-~~~~~~~~~~~-~~~~~p~~~~~~~~----~~~~--~r~~~~~~~~~~l~~l~-~~~~~~IVF~~sr~~a 284 (742)
T TIGR03817 215 IGAPV-VAV-TEDGSPRGART-VALWEPPLTELTGE----NGAP--VRRSASAEAADLLADLV-AEGARTLTFVRSRRGA 284 (742)
T ss_pred cCCCe-EEE-CCCCCCcCceE-EEEecCCccccccc----cccc--cccchHHHHHHHHHHHH-HCCCCEEEEcCCHHHH
Confidence 11110 000 00000000000 00000000000000 0000 00000112233333333 3568999999999999
Q ss_pred HHHHHHHHhc--------CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHH
Q psy16310 1091 KRLTQLLTML--------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162 (1493)
Q Consensus 1091 ~~l~~~L~~~--------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yi 1162 (1493)
+.++..|... +..+..|||+|++.+|..++++|++|++++|||||++++|||||++++||||++|.+..+|+
T Consensus 285 e~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~ 364 (742)
T TIGR03817 285 ELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLW 364 (742)
T ss_pred HHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHH
Confidence 9999988764 56788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCeEEEEecC--CCHHHHHHHHHhccccC
Q psy16310 1163 HRSGRTARANNEGLTLVLIES--DEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1163 qr~GR~gR~g~~G~~i~l~~~--~e~~~~~~~~~~~~~~~ 1200 (1493)
||+|||||+|+.|.+++++.. .|...+......++..+
T Consensus 365 qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~ 404 (742)
T TIGR03817 365 QQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPV 404 (742)
T ss_pred HhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCC
Confidence 999999999999999999874 45555555555555543
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-48 Score=440.30 Aligned_cols=361 Identities=29% Similarity=0.451 Sum_probs=285.2
Q ss_pred ccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHH
Q psy16310 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 234 (1493)
Q Consensus 155 ~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 234 (1493)
++..++.++..+...+|..|+|+|.+++| .+..++|+++|||||||||++|++|++++|.....
T Consensus 140 ~~~~~~~ll~nl~~~~F~~Pt~iq~~aip-vfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~--------------- 203 (593)
T KOG0344|consen 140 DYSMNKRLLENLQELGFDEPTPIQKQAIP-VFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ--------------- 203 (593)
T ss_pred hhhhcHHHHHhHhhCCCCCCCcccchhhh-hhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc---------------
Confidence 47889999999999999999999999999 56688999999999999999999999999865321
Q ss_pred HHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhc--CCCCeEEEEEEcCCCHHHHHH-HhcCCCC
Q psy16310 235 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG--KYTPVKVACVVGGMSTEKQLR-ILNKCPH 311 (1493)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~--~~~~i~v~~~~G~~~~~~~~~-~l~~~~~ 311 (1493)
.+...+.+++|+.|||+||.|+++.+.++. ..++++++.+........... .....++
T Consensus 204 -------------------~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~d 264 (593)
T KOG0344|consen 204 -------------------EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYD 264 (593)
T ss_pred -------------------ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHH
Confidence 123567899999999999999999999998 666677766665533222211 2223468
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhc-CChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~-~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
|+|+||-++..++..+....+ ++.+.++|+||||.+++. .|..++..|+..+.
T Consensus 265 ili~TP~ri~~~~~~~~~~id-l~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~------------------------- 318 (593)
T KOG0344|consen 265 ILISTPMRIVGLLGLGKLNID-LSKVEWLVVDEADLLFEPEFFVEQLADIYSACQ------------------------- 318 (593)
T ss_pred HHhcCHHHHHHHhcCCCccch-hheeeeEeechHHhhhChhhHHHHHHHHHHHhc-------------------------
Confidence 999999999999987764443 779999999999999998 89999999988763
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
.+...+-+||||++..+.+++...........+...... .
T Consensus 319 -------s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa------------------------~--------- 358 (593)
T KOG0344|consen 319 -------SPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSA------------------------N--------- 358 (593)
T ss_pred -------CcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhH------------------------h---------
Confidence 344567799999999988877543311111111000000 0
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccc-ccCchhhHHHHHHhhC-CCcEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILC-KHDEKDSYLYYFILQH-PGRTL 548 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~-~~~~I 548 (1493)
..+.+...+| ....|...+.+++... +.++|
T Consensus 359 -----------------------------------------------~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~l 391 (593)
T KOG0344|consen 359 -----------------------------------------------ETVDQELVFCGSEKGKLLALRQLVASGFKPPVL 391 (593)
T ss_pred -----------------------------------------------hhhhhhheeeecchhHHHHHHHHHhccCCCCeE
Confidence 0011111112 1223444444444433 57999
Q ss_pred EEecchhhHHHHHHHH-HhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 549 VFCNSISSVKRLTQLL-TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 549 IF~~s~~~a~~L~~~L-~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||+.+.+.|..|...| ...++.+.++||..++.+|..++++||.|+++|||||++++||+|+.+|++|||||+|.+..+
T Consensus 392 IfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~s 471 (593)
T KOG0344|consen 392 IFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLS 471 (593)
T ss_pred EEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHH
Confidence 9999999999999999 677999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCcchhhhhhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQE 663 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~~ 663 (1493)
|+||+||+||+|++|+||+||++.|++....+.+..
T Consensus 472 yihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~ 507 (593)
T KOG0344|consen 472 YIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVM 507 (593)
T ss_pred HHHHhhccCCCCCCcceEEEeccccchhhhhHHHHH
Confidence 999999999999999999999999999887775443
|
|
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=438.74 Aligned_cols=368 Identities=29% Similarity=0.453 Sum_probs=298.5
Q ss_pred hcccccc----CCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCc
Q psy16310 766 QMAEWVK----FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 841 (1493)
Q Consensus 766 ~~~~f~~----l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~ 841 (1493)
++.+|.+ +..++.+++.+...||..|||+|.+||| .+..++|+++|||||||||++|.+|++.++.....
T Consensus 130 ~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aip-vfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~----- 203 (593)
T KOG0344|consen 130 PLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIP-VFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ----- 203 (593)
T ss_pred ccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhh-hhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc-----
Confidence 3445554 6789999999999999999999999999 55578999999999999999999999998854321
Q ss_pred ccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhh--CCCCcEEEEEEcCCCH-HH
Q psy16310 842 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG--KYTPVKVACVVGGMST-EK 918 (1493)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~--~~~~~~v~~~~gg~~~-~~ 918 (1493)
.+...+.+++|+.|||+||.|++..+..+. ...++++..+...... ..
T Consensus 204 -----------------------------~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk 254 (593)
T KOG0344|consen 204 -----------------------------EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQK 254 (593)
T ss_pred -----------------------------ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhc
Confidence 134567899999999999999999999998 6666666655543222 22
Q ss_pred HHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccC-CChhHHHHHHHHhcccCCCCCceEEEEec
Q psy16310 919 QLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTFVFSA 997 (1493)
Q Consensus 919 ~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~-~~~~~l~~il~~l~~~~~~~~~q~ll~SA 997 (1493)
........++|+|+||-++..++..+.... .+..+.++|+||||++++. .|..++..|+..+. .+...+-+|||
T Consensus 255 ~a~~~~~k~dili~TP~ri~~~~~~~~~~i-dl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~----s~~i~~a~FSa 329 (593)
T KOG0344|consen 255 PAFLSDEKYDILISTPMRIVGLLGLGKLNI-DLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQ----SPDIRVALFSA 329 (593)
T ss_pred cchhHHHHHHHHhcCHHHHHHHhcCCCccc-hhheeeeEeechHHhhhChhhHHHHHHHHHHHhc----Ccchhhhhhhc
Confidence 222233456999999999999998765433 4788999999999999998 88899999998875 36678889999
Q ss_pred ccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEeccc-chhhHHHHHHHhC
Q psy16310 998 TLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD-EKDSYLYYFILQH 1076 (1493)
Q Consensus 998 Tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~~ 1076 (1493)
|++..+++++..... ....+.+.........+.+..+.|... .|...+..++...
T Consensus 330 t~~~~VEE~~~~i~~------------------------~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g 385 (593)
T KOG0344|consen 330 TISVYVEEWAELIKS------------------------DLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASG 385 (593)
T ss_pred cccHHHHHHHHHhhc------------------------cceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhcc
Confidence 999999888754322 222233333333344555555555543 4555555555443
Q ss_pred -CCcEEEEecchhhHHHHHHHH-HhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecC
Q psy16310 1077 -PGRTLVFCNSISSVKRLTQLL-TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 1154 (1493)
Q Consensus 1077 -~~~~IVF~~s~~~~~~l~~~L-~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~ 1154 (1493)
..+++||+.+.+.|..|+..| .--++.+.++||..++.+|..++++|+.|+++|||||++++||+|+.+|+.|||||+
T Consensus 386 ~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~ 465 (593)
T KOG0344|consen 386 FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDF 465 (593)
T ss_pred CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCC
Confidence 678999999999999999999 566899999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhcc
Q psy16310 1155 PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLE 1197 (1493)
Q Consensus 1155 p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~ 1197 (1493)
|.+..+|+||+||+||+|+.|.||+|++..+...++.+..-+.
T Consensus 466 p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 466 PQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVME 508 (593)
T ss_pred CchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHH
Confidence 9999999999999999999999999999999998888776654
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-45 Score=439.22 Aligned_cols=388 Identities=20% Similarity=0.231 Sum_probs=274.7
Q ss_pred cCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHH
Q psy16310 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 235 (1493)
Q Consensus 156 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 235 (1493)
..+|.+-..++ .|+..+.++|..+.+.++....|+++|||||+|||.++++-+|+.+-.+....
T Consensus 294 selP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~d-------------- 357 (1674)
T KOG0951|consen 294 SELPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRED-------------- 357 (1674)
T ss_pred cCCcchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccc--------------
Confidence 34666666665 46677999999999999988899999999999999999999999886543211
Q ss_pred HHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEe
Q psy16310 236 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVA 315 (1493)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~ 315 (1493)
....-...++++++|+++||+.+...|.+....+|++|...+|+.....+.. .+.+|+||
T Consensus 358 -----------------gs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~ 417 (1674)
T KOG0951|consen 358 -----------------GSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI---EETQVIVT 417 (1674)
T ss_pred -----------------cceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhh---hcceeEEe
Confidence 1112234689999999999999999999988999999999999976544322 34589999
Q ss_pred CcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhcccc
Q psy16310 316 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395 (1493)
Q Consensus 316 TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1493)
||+. +|.+.+...+....+-++++|+||.| |+...+++.++.|..+..... .
T Consensus 418 TPEK-~DiITRk~gdraY~qlvrLlIIDEIH-LLhDdRGpvLESIVaRt~r~s--------------------------e 469 (1674)
T KOG0951|consen 418 TPEK-WDIITRKSGDRAYEQLVRLLIIDEIH-LLHDDRGPVLESIVARTFRRS--------------------------E 469 (1674)
T ss_pred ccch-hhhhhcccCchhHHHHHHHHhhhhhh-hcccccchHHHHHHHHHHHHh--------------------------h
Confidence 9999 57777665555445558999999999 556789999999987765331 1
Q ss_pred CCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCC
Q psy16310 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 475 (1493)
Q Consensus 396 ~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1493)
.....++.+++|||+|+... +..++....+.+......++ +..+.+.++-.....
T Consensus 470 s~~e~~RlVGLSATLPNy~D------------------------V~~Fl~v~~~glf~fd~syR-pvPL~qq~Igi~ek~ 524 (1674)
T KOG0951|consen 470 STEEGSRLVGLSATLPNYED------------------------VASFLRVDPEGLFYFDSSYR-PVPLKQQYIGITEKK 524 (1674)
T ss_pred hcccCceeeeecccCCchhh------------------------hHHHhccCcccccccCcccC-cCCccceEeccccCC
Confidence 22456789999999997431 11122211111111111111 111111111110000
Q ss_pred cchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC--CCcEEEEecc
Q psy16310 476 KDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH--PGRTLVFCNS 553 (1493)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~IIF~~s 553 (1493)
.... ...-....++-+.++ .+++||||++
T Consensus 525 ~~~~-------------------------------------------------~qamNe~~yeKVm~~agk~qVLVFVHs 555 (1674)
T KOG0951|consen 525 PLKR-------------------------------------------------FQAMNEACYEKVLEHAGKNQVLVFVHS 555 (1674)
T ss_pred chHH-------------------------------------------------HHHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 0000 000001112222222 4699999999
Q ss_pred hhhHHHHHHHHHh-------------------------------------cCCCccccccCCCHHHHHHHHHHHhcCCCe
Q psy16310 554 ISSVKRLTQLLTM-------------------------------------LKCSPLPLHASMNQRQRLKNLDRFRDQNNS 596 (1493)
Q Consensus 554 ~~~a~~L~~~L~~-------------------------------------~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~ 596 (1493)
|+++...++.++. +..+++.||+||+..+|..+.+.|++|.++
T Consensus 556 RkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iq 635 (1674)
T KOG0951|consen 556 RKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQ 635 (1674)
T ss_pred chHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCcee
Confidence 9998887777631 246788999999999999999999999999
Q ss_pred EEEEechhhccCCCCCCcEEE----EecC------CCChHHHHHHHhccccCCC--CCeEEEEecCCcchhhhhhhhhhc
Q psy16310 597 ILLATDVAARGLDIPGIEHVI----HYHV------PRTSEIYIHRSGRTARANN--EGLTVVLIESDEIPLKTKFNLQEE 664 (1493)
Q Consensus 597 VLVaTdv~~rGlDip~v~~VI----~yd~------P~s~~~yiQR~GRagR~g~--~G~~i~l~~~~e~~~~~~l~~~~~ 664 (1493)
|||+|..+++|+++|+-+++| -||+ +.++.+.+||.|||||.+. .|..+++...++..++..+.++.-
T Consensus 636 vlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qL 715 (1674)
T KOG0951|consen 636 VLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQL 715 (1674)
T ss_pred EEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcC
Confidence 999999999999999988888 3765 4679999999999999665 488899988899999888888777
Q ss_pred cchHHHHHHHhhhcccc
Q psy16310 665 ENNEEEERAEADKEKTE 681 (1493)
Q Consensus 665 ~~~e~~e~~~~~~~~~e 681 (1493)
+.++..-....+..+.+
T Consensus 716 piesq~~~rl~d~lnae 732 (1674)
T KOG0951|consen 716 PIESQFVSRLADCLNAE 732 (1674)
T ss_pred CChHHHHHHhhhhhhhh
Confidence 77666655554444433
|
|
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-47 Score=413.48 Aligned_cols=353 Identities=28% Similarity=0.475 Sum_probs=291.8
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|++++|++.|++.++..||++|+.||+.||++. ..|.|+++++++|+|||.+|++++++++.-.
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~-i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~------------- 91 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPC-IKGHDVIAQAQSGTGKTAAFLISILQQIDMS------------- 91 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhcccccc-ccCCceeEeeeccccchhhhHHHHHhhcCcc-------------
Confidence 47999999999999999999999999999999855 4789999999999999999999999887321
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHh-cCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL-NKC 309 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l-~~~ 309 (1493)
.....|++++|||+||.|+..+...++...++++..+.||.....+...+ ...
T Consensus 92 --------------------------~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~ 145 (397)
T KOG0327|consen 92 --------------------------VKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDK 145 (397)
T ss_pred --------------------------hHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccC
Confidence 12235999999999999999999999999999999999998877554444 456
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
++|+|+|||++.+++..+.+.. ..+.++|+||||.|+..+|.+++..|++.+
T Consensus 146 ~hivvGTpgrV~dml~~~~l~~---~~iKmfvlDEaDEmLs~gfkdqI~~if~~l------------------------- 197 (397)
T KOG0327|consen 146 PHIVVGTPGRVFDMLNRGSLST---DGIKMFVLDEADEMLSRGFKDQIYDIFQEL------------------------- 197 (397)
T ss_pred ceeecCCchhHHHhhccccccc---cceeEEeecchHhhhccchHHHHHHHHHHc-------------------------
Confidence 8999999999999998764433 368999999999999999999999999988
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1493)
+...|++++|||+|.++.....-....+....+.+..
T Consensus 198 --------p~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~----------------------------------- 234 (397)
T KOG0327|consen 198 --------PSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE----------------------------------- 234 (397)
T ss_pred --------CcchhheeecccCcHHHHHHHHHhccCceEEEecchh-----------------------------------
Confidence 4457999999999988765432111111100000000
Q ss_pred hhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEE
Q psy16310 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 549 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~II 549 (1493)
.......+.+.......|...|+.+.. .-.+.+|
T Consensus 235 ---------------------------------------------ltl~gikq~~i~v~k~~k~~~l~dl~~-~~~q~~i 268 (397)
T KOG0327|consen 235 ---------------------------------------------LTLEGIKQFYINVEKEEKLDTLCDLYR-RVTQAVI 268 (397)
T ss_pred ---------------------------------------------hhhhheeeeeeeccccccccHHHHHHH-hhhcceE
Confidence 000111122222223336666666666 5578999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHH
Q psy16310 550 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629 (1493)
Q Consensus 550 F~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yi 629 (1493)
|||++..+..+...|...+..+..+||+|.+.+|..++..|+.|..+|||.|++++||+|+..|.+|||||+|.+...|+
T Consensus 269 f~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yi 348 (397)
T KOG0327|consen 269 FCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYI 348 (397)
T ss_pred EecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 630 HRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 630 QR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
||+||+||.|++|.++.+++..+...++.++
T Consensus 349 hR~gr~gr~grkg~~in~v~~~d~~~lk~ie 379 (397)
T KOG0327|consen 349 HRIGRAGRFGRKGVAINFVTEEDVRDLKDIE 379 (397)
T ss_pred hhcccccccCCCceeeeeehHhhHHHHHhHH
Confidence 9999999999999999999999888777765
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-46 Score=473.10 Aligned_cols=361 Identities=22% Similarity=0.265 Sum_probs=262.6
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHH
Q psy16310 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 236 (1493)
Q Consensus 157 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (1493)
.+++.+.++|.++||++||++|.++|| ++..|+|+++++|||||||++|++|+++.+..
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~-~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-------------------- 78 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAE-LAHAGRHVVVATGTASGKSLAYQLPVLSALAD-------------------- 78 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHH-HHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh--------------------
Confidence 488999999999999999999999998 56689999999999999999999999988853
Q ss_pred HHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeC
Q psy16310 237 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316 (1493)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~T 316 (1493)
.++.++|||+|||+||.|+.+.+..++ ..++++..+.|+++.. +...+..+++|||+|
T Consensus 79 --------------------~~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtT 136 (742)
T TIGR03817 79 --------------------DPRATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTN 136 (742)
T ss_pred --------------------CCCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEC
Confidence 124679999999999999999999987 4578998888888754 445566778999999
Q ss_pred cHHHHHHHHcCCcc-ccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhcccc
Q psy16310 317 PGRLWEFIQLGHFH-LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395 (1493)
Q Consensus 317 P~~L~~~l~~~~~~-~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1493)
|++|...+...+.. ...|+++++|||||||.|.+ .|..++..++.++.... .
T Consensus 137 Pd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~--------------------------~ 189 (742)
T TIGR03817 137 PDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLC--------------------------A 189 (742)
T ss_pred hHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHH--------------------------H
Confidence 99997543322111 12367899999999999976 58888888887764221 0
Q ss_pred CCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCC
Q psy16310 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 475 (1493)
Q Consensus 396 ~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1493)
..+..+|+++||||+++.....-.+ .+.+. ..+. .. ...........+
T Consensus 190 ~~g~~~q~i~~SATi~n~~~~~~~l-~g~~~-----------------------~~i~--~~-~~~~~~~~~~~~----- 237 (742)
T TIGR03817 190 RYGASPVFVLASATTADPAAAASRL-IGAPV-----------------------VAVT--ED-GSPRGARTVALW----- 237 (742)
T ss_pred hcCCCCEEEEEecCCCCHHHHHHHH-cCCCe-----------------------EEEC--CC-CCCcCceEEEEe-----
Confidence 1134579999999998764321111 10000 0000 00 000000000000
Q ss_pred cchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchh
Q psy16310 476 KDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 555 (1493)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~ 555 (1493)
.+........... .. .......+...+..++. ...++||||+|+.
T Consensus 238 ----------------------------~p~~~~~~~~~~~--~~----r~~~~~~~~~~l~~l~~-~~~~~IVF~~sr~ 282 (742)
T TIGR03817 238 ----------------------------EPPLTELTGENGA--PV----RRSASAEAADLLADLVA-EGARTLTFVRSRR 282 (742)
T ss_pred ----------------------------cCCcccccccccc--cc----ccchHHHHHHHHHHHHH-CCCCEEEEcCCHH
Confidence 0000000000000 00 00001123344444444 4679999999999
Q ss_pred hHHHHHHHHHhc--------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 556 SVKRLTQLLTML--------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 556 ~a~~L~~~L~~~--------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
.|+.++..|... +..+..+||++++.+|..+++.|++|++++||||+++++|||||++++||+||+|.++.+
T Consensus 283 ~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~ 362 (742)
T TIGR03817 283 GAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRAS 362 (742)
T ss_pred HHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHH
Confidence 999999988753 567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCcch
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e~~ 654 (1493)
|+||+|||||+|+.|.++++++.+..+
T Consensus 363 y~qRiGRaGR~G~~g~ai~v~~~~~~d 389 (742)
T TIGR03817 363 LWQQAGRAGRRGQGALVVLVARDDPLD 389 (742)
T ss_pred HHHhccccCCCCCCcEEEEEeCCChHH
Confidence 999999999999999999998754433
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=460.66 Aligned_cols=343 Identities=19% Similarity=0.233 Sum_probs=259.1
Q ss_pred cCCCCHHHHHHHHH-CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhH
Q psy16310 772 KFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEE 850 (1493)
Q Consensus 772 ~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~ 850 (1493)
.|+....+...++. +||..|+|+|.++|+. +..|+|+++++|||+|||+||++|++..
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~a-iL~GrDVLVimPTGSGKSLcYQLPAL~~-------------------- 499 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINA-TMSGYDVFVLMPTGGGKSLTYQLPALIC-------------------- 499 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCccHHHHHHHHHHHc--------------------
Confidence 35555666666554 7999999999999995 5588999999999999999999999842
Q ss_pred HHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc------
Q psy16310 851 EAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN------ 924 (1493)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~------ 924 (1493)
+..+|||+|+++|+.++...+... ++.+..+.|+.....+...+.
T Consensus 500 -------------------------~GiTLVISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~ 550 (1195)
T PLN03137 500 -------------------------PGITLVISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEY 550 (1195)
T ss_pred -------------------------CCcEEEEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcC
Confidence 135999999999998766666553 589999999998777655443
Q ss_pred CCCcEEEECcHHHHH--HHHhCcCccccccceeEEEecccchhccCC--ChhHHHHHHHHhcccCCCCCceEEEEecccc
Q psy16310 925 KCPHILVATPGRLWE--FIQLGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTFVFSATLT 1000 (1493)
Q Consensus 925 ~~~~IlV~TP~rl~~--~l~~~~~~~~~l~~l~~lVlDEah~ll~~~--~~~~l~~il~~l~~~~~~~~~q~ll~SATl~ 1000 (1493)
..++|||+||++|.. .+.+....+.....+.+|||||||++++|| |.+.+..+-. +.. ..+..++++||||++
T Consensus 551 g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~-Lr~--~fp~vPilALTATAT 627 (1195)
T PLN03137 551 SKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGI-LKQ--KFPNIPVLALTATAT 627 (1195)
T ss_pred CCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHH-HHH--hCCCCCeEEEEecCC
Confidence 467999999999852 222111111223358899999999999998 5566654311 111 124678999999999
Q ss_pred cchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccc-hhhHHHHHHHhC--C
Q psy16310 1001 HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE-KDSYLYYFILQH--P 1077 (1493)
Q Consensus 1001 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~--~ 1077 (1493)
..+...+... +.+..+.++.. .... .++ .+....... ....+..++... .
T Consensus 628 ~~V~eDI~~~----------------------L~l~~~~vfr~--Sf~R-pNL--~y~Vv~k~kk~le~L~~~I~~~~~~ 680 (1195)
T PLN03137 628 ASVKEDVVQA----------------------LGLVNCVVFRQ--SFNR-PNL--WYSVVPKTKKCLEDIDKFIKENHFD 680 (1195)
T ss_pred HHHHHHHHHH----------------------cCCCCcEEeec--ccCc-cce--EEEEeccchhHHHHHHHHHHhcccC
Confidence 8776544222 22222222111 0101 111 122222222 223445555433 5
Q ss_pred CcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCC
Q psy16310 1078 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 1157 (1493)
Q Consensus 1078 ~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s 1157 (1493)
..+||||+|+..|+.++..|...|+.+..|||+|++.+|..++++|+.|+++|||||++++||||+|+|++||||++|.+
T Consensus 681 esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkS 760 (1195)
T PLN03137 681 ECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKS 760 (1195)
T ss_pred CCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHH
Q psy16310 1158 SEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFN 1194 (1493)
Q Consensus 1158 ~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~ 1194 (1493)
++.|+||+|||||.|..|.|++|+...|...++.+..
T Consensus 761 iEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 761 IEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred HHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 9999999999999999999999999888877777764
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=471.80 Aligned_cols=441 Identities=17% Similarity=0.168 Sum_probs=320.4
Q ss_pred CCCCHHHHHHHHH-CCCCCCcHHHHhhHHHhhcc-----CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 773 FNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 773 l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~-----~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
+..+..+++.+.+ ++| .|||+|..||+.++.+ ++|++++||||||||++|++|++..+..
T Consensus 434 ~~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~------------- 499 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD------------- 499 (926)
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-------------
Confidence 3455666776665 577 5999999999976643 3799999999999999999999987632
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH---Hh
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---IL 923 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~---~l 923 (1493)
+.+++||+||++||.|+++.|+.++..+++++..++|+.+...+.. .+
T Consensus 500 -----------------------------g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l 550 (926)
T TIGR00580 500 -----------------------------GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKEL 550 (926)
T ss_pred -----------------------------CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHH
Confidence 3579999999999999999999998888999999999887554433 33
Q ss_pred cC-CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 924 NK-CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 924 ~~-~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
.. .++||||||..+ .. . ..++++++|||||+|++ .......+..+ ..+.|+++||||+.+.
T Consensus 551 ~~g~~dIVIGTp~ll----~~-~---v~f~~L~llVIDEahrf-----gv~~~~~L~~~-----~~~~~vL~~SATpipr 612 (926)
T TIGR00580 551 ASGKIDILIGTHKLL----QK-D---VKFKDLGLLIIDEEQRF-----GVKQKEKLKEL-----RTSVDVLTLSATPIPR 612 (926)
T ss_pred HcCCceEEEchHHHh----hC-C---CCcccCCEEEeeccccc-----chhHHHHHHhc-----CCCCCEEEEecCCCHH
Confidence 33 589999999532 22 2 24678999999999995 22334444444 3568999999998654
Q ss_pred hHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEE
Q psy16310 1003 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 1082 (1493)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IV 1082 (1493)
...... .+...+..+...... ...+..... ..........+......+++++|
T Consensus 613 tl~~~l------------------------~g~~d~s~I~~~p~~--R~~V~t~v~-~~~~~~i~~~i~~el~~g~qv~i 665 (926)
T TIGR00580 613 TLHMSM------------------------SGIRDLSIIATPPED--RLPVRTFVM-EYDPELVREAIRRELLRGGQVFY 665 (926)
T ss_pred HHHHHH------------------------hcCCCcEEEecCCCC--ccceEEEEE-ecCHHHHHHHHHHHHHcCCeEEE
Confidence 322110 011122222211110 011222111 11111111111112235789999
Q ss_pred EecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCC-Chh
Q psy16310 1083 FCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR-TSE 1159 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~--~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~-s~~ 1159 (1493)
|||++.+++.++..|+.. ++++..+||+|++.+|..++++|++|+++|||||+++++|||+|++++||++++|. +..
T Consensus 666 f~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls 745 (926)
T TIGR00580 666 VHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLA 745 (926)
T ss_pred EECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHH
Confidence 999999999999999985 77899999999999999999999999999999999999999999999999999986 678
Q ss_pred HHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCch
Q psy16310 1160 IYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDN 1239 (1493)
Q Consensus 1160 ~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 1239 (1493)
+|+||+||+||.|+.|.|++++.+.+. +.....+|+.+..+...+++++..++.+.
T Consensus 746 ~l~Qr~GRvGR~g~~g~aill~~~~~~------------------------l~~~~~~RL~~~~~~~~~g~gf~ia~~Dl 801 (926)
T TIGR00580 746 QLYQLRGRVGRSKKKAYAYLLYPHQKA------------------------LTEDAQKRLEAIQEFSELGAGFKIALHDL 801 (926)
T ss_pred HHHHHhcCCCCCCCCeEEEEEECCccc------------------------CCHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 999999999999999999999865431 11345677777888888889999999999
Q ss_pred HHHHHhhhhhhcccccchhccccCChhHHHHHHHHHHhhcC-C------CCCchhHHHHHHHHHhhhcc--hhhhhhhhh
Q psy16310 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-L------PDFPIDESVLSLIKKRIDLA--KSIEYLESK 1310 (1493)
Q Consensus 1240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 1310 (1493)
-+|++|+..+..|+| ++...+|++|.+|+++..++++ - ....++..+.++|+..+-.+ ..+.++. +
T Consensus 802 ~~Rg~G~~lG~~QsG----~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ip~~yi~~~~~r~~~y~-~ 876 (926)
T TIGR00580 802 EIRGAGNLLGEEQSG----HIESIGFDLYMELLEEAIEELKGGKPPKLEEETDIELPYSAFIPDDYIADDSLRLEFYK-R 876 (926)
T ss_pred HhcCCcCCCCCcccC----chhhccHHHHHHHHHHHHHHHhcCCCCCCCCceEEecCCCCcCChhhcCChHHHHHHHH-H
Confidence 999999999999999 8899999999999998887554 1 13345556778887765222 2333332 1
Q ss_pred hhcC----CCchhHHHhhhhcccc
Q psy16310 1311 IKKN----RPDNWLEKAAKDMDII 1330 (1493)
Q Consensus 1311 ~~~~----~~~~~~~~~a~~~~~~ 1330 (1493)
.... ..++-.+.+-+.||-+
T Consensus 877 ~~~~~~~~~~~~~~~e~~drfg~~ 900 (926)
T TIGR00580 877 IASAETEEELEKIRDELIDRFGPL 900 (926)
T ss_pred HhcCCCHHHHHHHHHHHHHhcCCC
Confidence 1111 1233444666666665
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >KOG4284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=418.08 Aligned_cols=357 Identities=25% Similarity=0.452 Sum_probs=290.7
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCC
Q psy16310 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 227 (1493)
Q Consensus 148 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 227 (1493)
.....|+++-|...++..|...+|..||++|..||| +.+.+.|+||+|..|+|||++|.+.+++.+..
T Consensus 22 ~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP-~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~----------- 89 (980)
T KOG4284|consen 22 NCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIP-AIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS----------- 89 (980)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhh-hhhcccceEEEecCCCCceEEEEeeeehhcCc-----------
Confidence 345679999999999999999999999999999999 66688999999999999999999988876632
Q ss_pred CccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcC-CCCeEEEEEEcCCCHHHHHHHh
Q psy16310 228 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK-YTPVKVACVVGGMSTEKQLRIL 306 (1493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~-~~~i~v~~~~G~~~~~~~~~~l 306 (1493)
....+.++||+||||+|.|+..++..++. +.|+++..++||+........+
T Consensus 90 ----------------------------~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl 141 (980)
T KOG4284|consen 90 ----------------------------RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL 141 (980)
T ss_pred ----------------------------ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh
Confidence 23456799999999999999999999875 4689999999999988887777
Q ss_pred cCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhh-cCChhhHHHHHHhhccccCCCccccccccCCcchh
Q psy16310 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~ 385 (1493)
.. ++|+|+||||+..++..+.+++. +++++|+||||.|++ .+|.+++.-|+..+
T Consensus 142 k~-~rIvIGtPGRi~qL~el~~~n~s---~vrlfVLDEADkL~~t~sfq~~In~ii~sl--------------------- 196 (980)
T KOG4284|consen 142 KQ-TRIVIGTPGRIAQLVELGAMNMS---HVRLFVLDEADKLMDTESFQDDINIIINSL--------------------- 196 (980)
T ss_pred hh-ceEEecCchHHHHHHHhcCCCcc---ceeEEEeccHHhhhchhhHHHHHHHHHHhc---------------------
Confidence 65 58999999999999998877655 899999999999998 57999999999887
Q ss_pred hhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccc
Q psy16310 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465 (1493)
Q Consensus 386 ~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1493)
+..+|++.||||.|..+.+++.-....+........++..--+.
T Consensus 197 ------------P~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~Gik------------------------ 240 (980)
T KOG4284|consen 197 ------------PQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIK------------------------ 240 (980)
T ss_pred ------------chhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechh------------------------
Confidence 45589999999999988887754332222222222221111000
Q ss_pred hhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCC-
Q psy16310 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP- 544 (1493)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~- 544 (1493)
+...... .+. ........|...|.+++...+
T Consensus 241 Qyv~~~~--------------s~n----------------------------------nsveemrlklq~L~~vf~~ipy 272 (980)
T KOG4284|consen 241 QYVVAKC--------------SPN----------------------------------NSVEEMRLKLQKLTHVFKSIPY 272 (980)
T ss_pred heeeecc--------------CCc----------------------------------chHHHHHHHHHHHHHHHhhCch
Confidence 0000000 000 000001124455556665554
Q ss_pred CcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCC
Q psy16310 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 624 (1493)
Q Consensus 545 ~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s 624 (1493)
.++||||++...|+-++.+|...|+.+..+.|.|+|.+|..+++.+|.-.++|||+||+.+||||-|+|++|||.|+|.+
T Consensus 273 ~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d 352 (980)
T KOG4284|consen 273 VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPAD 352 (980)
T ss_pred HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccCCCCCeEEEEecCCcc
Q psy16310 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653 (1493)
Q Consensus 625 ~~~yiQR~GRagR~g~~G~~i~l~~~~e~ 653 (1493)
-.+|.||+|||||.|..|.+++|+.....
T Consensus 353 ~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 353 EETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred hHHHHHHhhhcccccccceeEEEeccchh
Confidence 99999999999999999999999987665
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-44 Score=467.15 Aligned_cols=408 Identities=17% Similarity=0.190 Sum_probs=305.4
Q ss_pred CCHHHHH-HHHHCCCCCCcHHHHhhHHHhhcc-----CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcch
Q psy16310 775 IPETIIR-ALYQKGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848 (1493)
Q Consensus 775 l~~~l~~-~l~~~g~~~pt~iQ~~~i~~~l~~-----~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 848 (1493)
.+..+.+ ....++| .||++|.+||+.++.+ .+|+++|||||||||++|+++++..+.
T Consensus 585 ~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---------------- 647 (1147)
T PRK10689 585 HDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---------------- 647 (1147)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH----------------
Confidence 3444444 4566777 7999999999966643 279999999999999999988876542
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc----
Q psy16310 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN---- 924 (1493)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~---- 924 (1493)
.+.+++||+||++||.|+++.|+.++...++++.+++|+.+...+...+.
T Consensus 648 --------------------------~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~ 701 (1147)
T PRK10689 648 --------------------------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAE 701 (1147)
T ss_pred --------------------------cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHh
Confidence 34579999999999999999999987778899999999988777655442
Q ss_pred CCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 925 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 925 ~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
..++|+||||+.+ .. . ..+.++++|||||+|++ |+. ....+..+ +.++|+++||||+.+...
T Consensus 702 g~~dIVVgTp~lL----~~-~---v~~~~L~lLVIDEahrf---G~~--~~e~lk~l-----~~~~qvLl~SATpiprtl 763 (1147)
T PRK10689 702 GKIDILIGTHKLL----QS-D---VKWKDLGLLIVDEEHRF---GVR--HKERIKAM-----RADVDILTLTATPIPRTL 763 (1147)
T ss_pred CCCCEEEECHHHH----hC-C---CCHhhCCEEEEechhhc---chh--HHHHHHhc-----CCCCcEEEEcCCCCHHHH
Confidence 4689999999754 21 1 23568999999999996 332 23444444 467899999999875543
Q ss_pred hHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEe
Q psy16310 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFC 1084 (1493)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~ 1084 (1493)
..... .+.++..+...... ...+......+........+... ...+++++|||
T Consensus 764 ~l~~~------------------------gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~il~e-l~r~gqv~vf~ 816 (1147)
T PRK10689 764 NMAMS------------------------GMRDLSIIATPPAR--RLAVKTFVREYDSLVVREAILRE-ILRGGQVYYLY 816 (1147)
T ss_pred HHHHh------------------------hCCCcEEEecCCCC--CCCceEEEEecCcHHHHHHHHHH-HhcCCeEEEEE
Confidence 32211 11222222221111 01122221111111111111111 22468999999
Q ss_pred cchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCC-CChhHH
Q psy16310 1085 NSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP-RTSEIY 1161 (1493)
Q Consensus 1085 ~s~~~~~~l~~~L~~~--~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p-~s~~~y 1161 (1493)
|++..++.++..|... +.++..+||+|++.+|.+++.+|++|+++|||||+++++|||+|++++||..+.. .+..+|
T Consensus 817 n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~ 896 (1147)
T PRK10689 817 NDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 (1147)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHH
Confidence 9999999999999987 7789999999999999999999999999999999999999999999999965543 256689
Q ss_pred HHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCchHH
Q psy16310 1162 IHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWL 1241 (1493)
Q Consensus 1162 iqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 1241 (1493)
+||+||+||.|+.|.|++++.+.. .+.....+|+.+..+...+++++..++.+..+
T Consensus 897 ~Qr~GRvGR~g~~g~a~ll~~~~~------------------------~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~ 952 (1147)
T PRK10689 897 HQLRGRVGRSHHQAYAWLLTPHPK------------------------AMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952 (1147)
T ss_pred HHHhhccCCCCCceEEEEEeCCCc------------------------ccCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Confidence 999999999999999999874432 11234567888888999999999999999999
Q ss_pred HHHhhhhhhcccccchhccccCChhHHHHHHHHHHhhcC-C----------CCCchhHHHHHHHHHhh
Q psy16310 1242 HRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD-L----------PDFPIDESVLSLIKKRI 1298 (1493)
Q Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~~ 1298 (1493)
|++|+..+.+|+| ++...||++|.+|+++...++. . ....++..+.++|+..+
T Consensus 953 rg~g~~~g~~q~g----~~~~~g~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y 1016 (1147)
T PRK10689 953 RGAGELLGEEQSG----QMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDF 1016 (1147)
T ss_pred cCCccCCCCccCC----CccccCHHHHHHHHHHHHHHHhcCCCcccccccCCceEEecCCCccCChhh
Confidence 9999999999999 8999999999999998887543 1 12345556778887665
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-44 Score=445.72 Aligned_cols=347 Identities=20% Similarity=0.258 Sum_probs=253.4
Q ss_pred ccc--ccCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 152 EWV--KFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 152 ~f~--~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
.|. .++....+...+.. +||..++|+|.++|+ ++..|+|+|+++|||+|||++|+||++..
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~-aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------------- 499 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIIN-ATMSGYDVFVLMPTGGGKSLTYQLPALIC--------------- 499 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHH-HHHcCCCEEEEcCCCccHHHHHHHHHHHc---------------
Confidence 365 35666667666654 599999999999998 55688999999999999999999999731
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc-
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN- 307 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~- 307 (1493)
+..+|||+|+++|+.++...+... ++.+..++|+.....+...+.
T Consensus 500 ------------------------------~GiTLVISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~ 545 (1195)
T PLN03137 500 ------------------------------PGITLVISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQE 545 (1195)
T ss_pred ------------------------------CCcEEEEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHH
Confidence 135999999999999776666553 788999999988776655442
Q ss_pred -----CCCCEEEeCcHHHHH--HHHcCCccccccccccEEEEecCchhhhcC--ChhhHHHHHHhhccccCCCccccccc
Q psy16310 308 -----KCPHILVATPGRLWE--FIQLGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTMIE 378 (1493)
Q Consensus 308 -----~~~~IiV~TP~~L~~--~l~~~~~~~~~l~~i~~lViDEAh~ll~~~--~~~~l~~il~~l~~~~~~~~~~~~~~ 378 (1493)
..++|||+||++|.. .+......+.....+.+|||||||++++|| |.+.+..+-.....
T Consensus 546 l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~------------ 613 (1195)
T PLN03137 546 LSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQK------------ 613 (1195)
T ss_pred HHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHh------------
Confidence 467999999999852 222111111122358899999999999997 66666543211100
Q ss_pred cCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhh
Q psy16310 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI 458 (1493)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (1493)
.+..++++||||++..+...+.. .+....+....
T Consensus 614 -------------------fp~vPilALTATAT~~V~eDI~~----------------------~L~l~~~~vfr----- 647 (1195)
T PLN03137 614 -------------------FPNIPVLALTATATASVKEDVVQ----------------------ALGLVNCVVFR----- 647 (1195)
T ss_pred -------------------CCCCCeEEEEecCCHHHHHHHHH----------------------HcCCCCcEEee-----
Confidence 12367899999999876543211 11100000000
Q ss_pred ccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHH
Q psy16310 459 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 538 (1493)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 538 (1493)
....+.. +++ .+..........+..
T Consensus 648 -------------~Sf~RpN-L~y-----------------------------------------~Vv~k~kk~le~L~~ 672 (1195)
T PLN03137 648 -------------QSFNRPN-LWY-----------------------------------------SVVPKTKKCLEDIDK 672 (1195)
T ss_pred -------------cccCccc-eEE-----------------------------------------EEeccchhHHHHHHH
Confidence 0000000 000 000000001123334
Q ss_pred HHhhC--CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEE
Q psy16310 539 FILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 616 (1493)
Q Consensus 539 ~l~~~--~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~V 616 (1493)
++... ...+||||.|+..|+.++..|...|+.+..|||+|++.+|..+++.|+.|+++|||||+++++|||+|+|++|
T Consensus 673 ~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~V 752 (1195)
T PLN03137 673 FIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFV 752 (1195)
T ss_pred HHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEE
Confidence 44322 4578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 617 IHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 617 I~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
||||+|.++..|+||+|||||.|.+|.|++||+..|......+..
T Consensus 753 IHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 753 IHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred EEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988877666643
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-44 Score=438.53 Aligned_cols=330 Identities=21% Similarity=0.289 Sum_probs=250.1
Q ss_pred HCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 785 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 785 ~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
.+||..|+|+|.++|+. +..|+|+++++|||||||++|++|++..
T Consensus 6 ~~g~~~~r~~Q~~ai~~-~l~g~dvlv~apTGsGKTl~y~lp~l~~---------------------------------- 50 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINA-VLLGRDCFVVMPTGGGKSLCYQLPALCS---------------------------------- 50 (470)
T ss_pred hcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCCcHhHHHHHHHHHc----------------------------------
Confidence 36999999999999995 4577899999999999999999998731
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH----hcCCCcEEEECcHHHHHH
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI----LNKCPHILVATPGRLWEF 940 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~----l~~~~~IlV~TP~rl~~~ 940 (1493)
+..+|||+||++|+.|+...+..+ ++.+..+.|+.....+... ....++|+++||+++...
T Consensus 51 -----------~~~~lVi~P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~ 115 (470)
T TIGR00614 51 -----------DGITLVISPLISLMEDQVLQLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSAS 115 (470)
T ss_pred -----------CCcEEEEecHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCc
Confidence 125899999999999999998765 4788888888776544322 234579999999997532
Q ss_pred HH-hCcCccccccceeEEEecccchhccCCC--hhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcc
Q psy16310 941 IQ-LGHFHLTELYKINYLVIDETDRMIESGH--FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSK 1017 (1493)
Q Consensus 941 l~-~~~~~~~~l~~l~~lVlDEah~ll~~~~--~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~ 1017 (1493)
.. ... +....++++|||||||++++||+ .+.+..+...... .+..+++++|||+++.+...+..
T Consensus 116 ~~~~~~--l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~---~~~~~~l~lTAT~~~~~~~di~~-------- 182 (470)
T TIGR00614 116 NRLLQT--LEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQK---FPNVPIMALTATASPSVREDILR-------- 182 (470)
T ss_pred hhHHHH--HHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHH---cCCCceEEEecCCCHHHHHHHHH--------
Confidence 20 001 11345789999999999999874 4554443221111 24678999999999776544322
Q ss_pred cccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH-hCC-CcEEEEecchhhHHHHHH
Q psy16310 1018 KVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL-QHP-GRTLVFCNSISSVKRLTQ 1095 (1493)
Q Consensus 1018 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~~-~~~IVF~~s~~~~~~l~~ 1095 (1493)
.+.+..+..+..... ..++ ...+..........+..++. ... ..+||||+|++.|+.++.
T Consensus 183 --------------~l~l~~~~~~~~s~~---r~nl-~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~ 244 (470)
T TIGR00614 183 --------------QLNLKNPQIFCTSFD---RPNL-YYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTA 244 (470)
T ss_pred --------------HcCCCCCcEEeCCCC---CCCc-EEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHH
Confidence 122222222211100 0111 11111111233444555555 333 456999999999999999
Q ss_pred HHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCC
Q psy16310 1096 LLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175 (1493)
Q Consensus 1096 ~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G 1175 (1493)
.|...|+.+..|||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||||++|.+.+.|+||+|||||.|..|
T Consensus 245 ~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~ 324 (470)
T TIGR00614 245 SLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPS 324 (470)
T ss_pred HHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCHHHHHHHHHh
Q psy16310 1176 LTLVLIESDEIPLYIKMFNS 1195 (1493)
Q Consensus 1176 ~~i~l~~~~e~~~~~~~~~~ 1195 (1493)
.|++|+++.|...++.+...
T Consensus 325 ~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 325 ECHLFYAPADINRLRRLLME 344 (470)
T ss_pred eEEEEechhHHHHHHHHHhc
Confidence 99999999999888887654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=429.92 Aligned_cols=384 Identities=20% Similarity=0.204 Sum_probs=272.2
Q ss_pred HCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhh
Q psy16310 168 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 247 (1493)
Q Consensus 168 ~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1493)
-.+|..+..+|+.++|.+...+.|+|||||||||||.+|+|.||+.+.++...
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~--------------------------- 157 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQ--------------------------- 157 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccc---------------------------
Confidence 36788899999999999999999999999999999999999999988641110
Q ss_pred cchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcC
Q psy16310 248 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~ 327 (1493)
..-.....++++|+|+++||..+.+.+.+-...+|++|..++|++...... . ..++|||+||+.+ |.+.+.
T Consensus 158 -----~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te-i--~~tqiiVTTPEKw-DvvTRk 228 (1230)
T KOG0952|consen 158 -----GDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE-I--ADTQIIVTTPEKW-DVVTRK 228 (1230)
T ss_pred -----cccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH-H--HhcCEEEecccce-eeeeee
Confidence 122346789999999999999999999888888899999999998766554 2 2369999999994 666544
Q ss_pred Cc-cccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEE
Q psy16310 328 HF-HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVF 406 (1493)
Q Consensus 328 ~~-~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~ 406 (1493)
.. +...++.+++|||||+| |+...+++.++.|+.+..... .......++|++
T Consensus 229 ~~~d~~l~~~V~LviIDEVH-lLhd~RGpvlEtiVaRtlr~v--------------------------essqs~IRivgL 281 (1230)
T KOG0952|consen 229 SVGDSALFSLVRLVIIDEVH-LLHDDRGPVLETIVARTLRLV--------------------------ESSQSMIRIVGL 281 (1230)
T ss_pred eccchhhhhheeeEEeeeeh-hhcCcccchHHHHHHHHHHHH--------------------------HhhhhheEEEEe
Confidence 32 23345679999999999 556789999999998875321 122455799999
Q ss_pred eeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhc
Q psy16310 407 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 486 (1493)
Q Consensus 407 SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (1493)
|||+|+. ..++.|+.......+........+..+.+..+.++.. .....
T Consensus 282 SATlPN~------------------------eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~-~~~~~------ 330 (1230)
T KOG0952|consen 282 SATLPNY------------------------EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGK-KNRQQ------ 330 (1230)
T ss_pred eccCCCH------------------------HHHHHHhcCCCccceeeecccccccceeeeEEeeecc-cchhh------
Confidence 9999863 2344444443222111111111111111111111110 00000
Q ss_pred CCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHh
Q psy16310 487 HPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM 566 (1493)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~ 566 (1493)
...+ .......+.++ ...+.+++|||++|..+.+.++.|..
T Consensus 331 ------~~~~--------------------------------d~~~~~kv~e~-~~~g~qVlvFvhsR~~Ti~tA~~l~~ 371 (1230)
T KOG0952|consen 331 ------KKNI--------------------------------DEVCYDKVVEF-LQEGHQVLVFVHSRNETIRTAKKLRE 371 (1230)
T ss_pred ------hhhH--------------------------------HHHHHHHHHHH-HHcCCeEEEEEecChHHHHHHHHHHH
Confidence 0000 00001111111 23467999999999999999988843
Q ss_pred c-----------------------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEE----Ee
Q psy16310 567 L-----------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI----HY 619 (1493)
Q Consensus 567 ~-----------------------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI----~y 619 (1493)
. ..+++.+|+||...+|..+.+.|..|.++||+||..+++|+++|+--++| .|
T Consensus 372 ~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~y 451 (1230)
T KOG0952|consen 372 RAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVY 451 (1230)
T ss_pred HHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCccc
Confidence 2 25567899999999999999999999999999999999999999766666 35
Q ss_pred cCC------CChHHHHHHHhccccC--CCCCeEEEEecCCcchhhhhhhhhhccchHHHHHHHhhhcccccch
Q psy16310 620 HVP------RTSEIYIHRSGRTARA--NNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDIN 684 (1493)
Q Consensus 620 d~P------~s~~~yiQR~GRagR~--g~~G~~i~l~~~~e~~~~~~l~~~~~~~~e~~e~~~~~~~~~e~~~ 684 (1493)
|.- .+..+.+|..|||||. +..|.++++.+.+-+.+|..+.....+.+...-....+....|...
T Consensus 452 dsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~L 524 (1230)
T KOG0952|consen 452 DSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISL 524 (1230)
T ss_pred ccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheee
Confidence 544 3567889999999994 5569999999999999998888777777666555555555544433
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=435.35 Aligned_cols=338 Identities=20% Similarity=0.330 Sum_probs=254.5
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHH
Q psy16310 775 IPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 853 (1493)
Q Consensus 775 l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 853 (1493)
++....+.|++ +||..|+|+|.++|+. +..|+|+++++|||+|||++|++|++..
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~-il~g~dvlv~apTGsGKTl~y~lpal~~----------------------- 64 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDA-VLSGRDCLVVMPTGGGKSLCYQIPALVL----------------------- 64 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHHHHHc-----------------------
Confidence 33444444544 6999999999999995 5578999999999999999999998732
Q ss_pred HHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH----hcCCCcE
Q psy16310 854 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI----LNKCPHI 929 (1493)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~----l~~~~~I 929 (1493)
...+|||+||++|+.|+.+.++.+ ++.+.++.++.....+... .....++
T Consensus 65 ----------------------~g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~i 118 (607)
T PRK11057 65 ----------------------DGLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKL 118 (607)
T ss_pred ----------------------CCCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcE
Confidence 125899999999999999998875 4778888888776654332 2345789
Q ss_pred EEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCC--hhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 930 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGH--FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 930 lV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~--~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
+++||++|........+ ...++++|||||||++++||+ .+.+..+-. +... .+..+++++|||++......+
T Consensus 119 l~~tPe~l~~~~~~~~l---~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~-l~~~--~p~~~~v~lTAT~~~~~~~di 192 (607)
T PRK11057 119 LYIAPERLMMDNFLEHL---AHWNPALLAVDEAHCISQWGHDFRPEYAALGQ-LRQR--FPTLPFMALTATADDTTRQDI 192 (607)
T ss_pred EEEChHHhcChHHHHHH---hhCCCCEEEEeCccccccccCcccHHHHHHHH-HHHh--CCCCcEEEEecCCChhHHHHH
Confidence 99999998732111111 123689999999999999874 444443322 2111 246789999999997654433
Q ss_pred hhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHh-CCCcEEEEecc
Q psy16310 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ-HPGRTLVFCNS 1086 (1493)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~IVF~~s 1086 (1493)
. ..+.+..+...... .. ..++ .+...........+..++.. .++++||||+|
T Consensus 193 ~----------------------~~l~l~~~~~~~~~--~~-r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~t 245 (607)
T PRK11057 193 V----------------------RLLGLNDPLIQISS--FD-RPNI--RYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNS 245 (607)
T ss_pred H----------------------HHhCCCCeEEEECC--CC-CCcc--eeeeeeccchHHHHHHHHHhcCCCCEEEEECc
Confidence 1 11222222221100 00 0111 11222223344455555544 36789999999
Q ss_pred hhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHh
Q psy16310 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 1166 (1493)
Q Consensus 1087 ~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~G 1166 (1493)
++.|+.++..|...|+.+..+||+|++.+|..+++.|+.|+++|||||+++++|||+|+|++|||||+|.+.++|+||+|
T Consensus 246 r~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~G 325 (607)
T PRK11057 246 RAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETG 325 (607)
T ss_pred HHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCeEEEEecCCCHHHHHHHHHh
Q psy16310 1167 RTARANNEGLTLVLIESDEIPLYIKMFNS 1195 (1493)
Q Consensus 1167 R~gR~g~~G~~i~l~~~~e~~~~~~~~~~ 1195 (1493)
||||.|..|.|++|+++.|...++++...
T Consensus 326 RaGR~G~~~~~ill~~~~d~~~~~~~~~~ 354 (607)
T PRK11057 326 RAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (607)
T ss_pred hccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 99999999999999999998887777543
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=445.68 Aligned_cols=347 Identities=22% Similarity=0.283 Sum_probs=261.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcch
Q psy16310 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848 (1493)
Q Consensus 769 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 848 (1493)
.|++++|++.+++++.+.||.+|+|+|.+||+..+..|+|++++||||||||++|.+|+++++.
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~---------------- 65 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA---------------- 65 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh----------------
Confidence 5889999999999999999999999999999976778999999999999999999999998773
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCc
Q psy16310 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928 (1493)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~ 928 (1493)
.+.++|||+||++||.|+++.|+.++. .++++..++|+...... . ...++
T Consensus 66 --------------------------~~~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~--~-l~~~~ 115 (737)
T PRK02362 66 --------------------------RGGKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE--W-LGDND 115 (737)
T ss_pred --------------------------cCCcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc--c-cCCCC
Confidence 234699999999999999999998753 58999999998764432 1 23579
Q ss_pred EEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc--hHhH
Q psy16310 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS--LKNS 1006 (1493)
Q Consensus 929 IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~--~~~~ 1006 (1493)
|+|+||+++..+++.+. ..+.++++||+||+|.+.+.+++..++.++.++... ....|++++|||+++. +..+
T Consensus 116 IiV~Tpek~~~llr~~~---~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~--~~~~qii~lSATl~n~~~la~w 190 (737)
T PRK02362 116 IIVATSEKVDSLLRNGA---PWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRL--NPDLQVVALSATIGNADELADW 190 (737)
T ss_pred EEEECHHHHHHHHhcCh---hhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhc--CCCCcEEEEcccCCCHHHHHHH
Confidence 99999999988887543 246789999999999999989999999888877532 3568999999999853 3333
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecc-cchhhHHHHHHHhCCCcEEEEec
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQHPGRTLVFCN 1085 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~IVF~~ 1085 (1493)
+..... .....+. .+.. .+.......... ....+.... ......+... ...++++||||+
T Consensus 191 l~~~~~------~~~~rpv--------~l~~--~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~LVF~~ 251 (737)
T PRK02362 191 LDAELV------DSEWRPI--------DLRE--GVFYGGAIHFDD--SQREVEVPSKDDTLNLVLDT-LEEGGQCLVFVS 251 (737)
T ss_pred hCCCcc------cCCCCCC--------CCee--eEecCCeecccc--ccccCCCccchHHHHHHHHH-HHcCCCeEEEEe
Confidence 211000 0000000 0000 000000000000 000011111 1111222222 235789999999
Q ss_pred chhhHHHHHHHHHhc------------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCC
Q psy16310 1086 SISSVKRLTQLLTML------------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNS 1129 (1493)
Q Consensus 1086 s~~~~~~l~~~L~~~------------------------------------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~ 1129 (1493)
|+..|+.++..|... ..++..|||+|++.+|..+++.|++|.++
T Consensus 252 sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~ 331 (737)
T PRK02362 252 SRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIK 331 (737)
T ss_pred CHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCe
Confidence 999999988887543 13678899999999999999999999999
Q ss_pred eEEeehhhhccccCCCccEEEE----ec-----CCCChhHHHHHHhccCCCCCC--CeEEEEecCCC
Q psy16310 1130 ILLATDVAARGLDIPGIEHVIH----YH-----VPRTSEIYIHRSGRTARANNE--GLTLVLIESDE 1185 (1493)
Q Consensus 1130 VLVaTdv~~~GiDip~v~~VI~----~d-----~p~s~~~yiqr~GR~gR~g~~--G~~i~l~~~~e 1185 (1493)
|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.|.. |.+++++.+.+
T Consensus 332 VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 332 VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred EEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 9999999999999999999997 76 688999999999999999864 99999987653
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=423.71 Aligned_cols=329 Identities=21% Similarity=0.294 Sum_probs=241.9
Q ss_pred HCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhh
Q psy16310 168 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 247 (1493)
Q Consensus 168 ~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1493)
.+||..|+|+|.++|+ ++..|+|+++++|||||||++|++|++.
T Consensus 6 ~~g~~~~r~~Q~~ai~-~~l~g~dvlv~apTGsGKTl~y~lp~l~----------------------------------- 49 (470)
T TIGR00614 6 VFGLSSFRPVQLEVIN-AVLLGRDCFVVMPTGGGKSLCYQLPALC----------------------------------- 49 (470)
T ss_pred hcCCCCCCHHHHHHHH-HHHcCCCEEEEcCCCCcHhHHHHHHHHH-----------------------------------
Confidence 3699999999999998 5557889999999999999999999873
Q ss_pred cchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH----hcCCCCEEEeCcHHHHHH
Q psy16310 248 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI----LNKCPHILVATPGRLWEF 323 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~----l~~~~~IiV~TP~~L~~~ 323 (1493)
.+..+|||+||++|+.|+...+..+ ++.+..+.|+......... ....++|+++||+++...
T Consensus 50 ----------~~~~~lVi~P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~ 115 (470)
T TIGR00614 50 ----------SDGITLVISPLISLMEDQVLQLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSAS 115 (470)
T ss_pred ----------cCCcEEEEecHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCc
Confidence 1235899999999999999998764 6778888888766543222 234579999999997532
Q ss_pred HH-cCCccccccccccEEEEecCchhhhcC--ChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCC
Q psy16310 324 IQ-LGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQP 400 (1493)
Q Consensus 324 l~-~~~~~~~~l~~i~~lViDEAh~ll~~~--~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1493)
.. ... +..+.++++|||||||++++|+ |.+.+..+...... .+.
T Consensus 116 ~~~~~~--l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-------------------------------~~~ 162 (470)
T TIGR00614 116 NRLLQT--LEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQK-------------------------------FPN 162 (470)
T ss_pred hhHHHH--HHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHH-------------------------------cCC
Confidence 20 001 1024578999999999999886 45555443221110 133
Q ss_pred ceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhh
Q psy16310 401 RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 480 (1493)
Q Consensus 401 ~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1493)
.+++++|||+++.+...+. ..+....+..... ...
T Consensus 163 ~~~l~lTAT~~~~~~~di~----------------------~~l~l~~~~~~~~------------------s~~----- 197 (470)
T TIGR00614 163 VPIMALTATASPSVREDIL----------------------RQLNLKNPQIFCT------------------SFD----- 197 (470)
T ss_pred CceEEEecCCCHHHHHHHH----------------------HHcCCCCCcEEeC------------------CCC-----
Confidence 6799999999976543221 1111111100000 000
Q ss_pred HHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHh-hCC-CcEEEEecchhhHH
Q psy16310 481 YYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL-QHP-GRTLVFCNSISSVK 558 (1493)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~~-~~~IIF~~s~~~a~ 558 (1493)
.+.+ ...+..........+..++. ..+ ..+||||+|++.++
T Consensus 198 -----------------------r~nl--------------~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e 240 (470)
T TIGR00614 198 -----------------------RPNL--------------YYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSE 240 (470)
T ss_pred -----------------------CCCc--------------EEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHH
Confidence 0000 00000000112223444444 333 45699999999999
Q ss_pred HHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccC
Q psy16310 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 638 (1493)
Q Consensus 559 ~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~ 638 (1493)
.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+|++|.++..|+||+|||||.
T Consensus 241 ~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~ 320 (470)
T TIGR00614 241 QVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRD 320 (470)
T ss_pred HHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCcchhhhhhhh
Q psy16310 639 NNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 639 g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
|.+|.|++|+++.|...+..+..
T Consensus 321 G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 321 GLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CCCceEEEEechhHHHHHHHHHh
Confidence 99999999999999887777654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0329|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=361.16 Aligned_cols=314 Identities=28% Similarity=0.497 Sum_probs=258.5
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
+.|.+|-|.|++++++-+.||++|+.+|.+|||.++. |.|++.+|..|.|||.+|++.-++.+-
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqail-gmdvlcqaksgmgktavfvl~tlqqie--------------- 105 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL-GMDVLCQAKSGMGKTAVFVLATLQQIE--------------- 105 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhh-cchhheecccCCCceeeeehhhhhhcC---------------
Confidence 4588999999999999999999999999999998885 579999999999999999999998762
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
.......+|++|+|||||.||.+...++.+++ ++++.+++||.+.......+.+.
T Consensus 106 ------------------------pv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~ 161 (387)
T KOG0329|consen 106 ------------------------PVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNC 161 (387)
T ss_pred ------------------------CCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCC
Confidence 22345679999999999999999999999997 58999999999999999999999
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccC-CChhHHHHHHHHhcccCCCCCceEEEEecccccchHh
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~-~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
|+|+||||||++.+.+...+ .+.+++.+|+||||.|+++ ..+.++..|+.. +|...|+++||||++.++..
T Consensus 162 PhivVgTPGrilALvr~k~l---~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~-----tp~~KQvmmfsatlskeiRp 233 (387)
T KOG0329|consen 162 PHIVVGTPGRILALVRNRSL---NLKNVKHFVLDECDKMLEQLDMRRDVQEIFRM-----TPHEKQVMMFSATLSKEIRP 233 (387)
T ss_pred CeEEEcCcHHHHHHHHhccC---chhhcceeehhhHHHHHHHHHHHHHHHHHhhc-----CcccceeeeeeeecchhhHH
Confidence 99999999999999987765 4568899999999999875 445667777654 36889999999999988776
Q ss_pred HHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CCcEEEEe
Q psy16310 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFC 1084 (1493)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~ 1084 (1493)
.+..+...+-. ++--.+...+...+.++|+.....+|...+..++... -.+++||+
T Consensus 234 vC~kFmQdPmE-----------------------i~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFv 290 (387)
T KOG0329|consen 234 VCHKFMQDPME-----------------------IFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFV 290 (387)
T ss_pred HHHhhhcCchh-----------------------hhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEee
Confidence 55433221111 0111112234456777778788888888888877644 56899999
Q ss_pred cchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHH
Q psy16310 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164 (1493)
Q Consensus 1085 ~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr 1164 (1493)
.+... | + | ..+ ||||++++||+||..|+.|||||+|.+..+|+||
T Consensus 291 Ksv~R-------l--------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHr 335 (387)
T KOG0329|consen 291 KSVQR-------L--------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHR 335 (387)
T ss_pred ehhhh-------h--------------h----------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHH
Confidence 88665 0 0 3 123 8999999999999999999999999999999999
Q ss_pred HhccCCCCCCCeEEEEecCCCHH
Q psy16310 1165 SGRTARANNEGLTLVLIESDEIP 1187 (1493)
Q Consensus 1165 ~GR~gR~g~~G~~i~l~~~~e~~ 1187 (1493)
+|||||.|..|.+|.|++..+..
T Consensus 336 v~rAgrfGtkglaitfvs~e~da 358 (387)
T KOG0329|consen 336 VARAGRFGTKGLAITFVSDENDA 358 (387)
T ss_pred hhhhhccccccceeehhcchhhH
Confidence 99999999999999999876543
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=441.26 Aligned_cols=354 Identities=21% Similarity=0.298 Sum_probs=254.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHH
Q psy16310 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 854 (1493)
Q Consensus 775 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 854 (1493)
+++.+.+.+.+ +|..|||+|.++||. +..|+|++++||||||||++|.+|+++.++.....
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~-il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~----------------- 78 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPL-IHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE----------------- 78 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHH-HHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc-----------------
Confidence 56777676655 899999999999995 56889999999999999999999999988642110
Q ss_pred HHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHH-------h----hCCC-CcEEEEEEcCCCHHHHHHH
Q psy16310 855 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD-------A----GKYT-PVKVACVVGGMSTEKQLRI 922 (1493)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~-------~----~~~~-~~~v~~~~gg~~~~~~~~~ 922 (1493)
.....+.++|||+||++|+.|+++.+.. + +... ++++.+.+|+.+...+...
T Consensus 79 ----------------~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~ 142 (876)
T PRK13767 79 ----------------GELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKM 142 (876)
T ss_pred ----------------cCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHH
Confidence 0113467899999999999999886653 2 2233 6889999999998888888
Q ss_pred hcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 923 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 923 l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
+.+.++|+|+||++|..++..... ...+.++++|||||||.+.+..++..+...+.++.... ....|++++|||+++.
T Consensus 143 l~~~p~IlVtTPE~L~~ll~~~~~-~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~-~~~~q~IglSATl~~~ 220 (876)
T PRK13767 143 LKKPPHILITTPESLAILLNSPKF-REKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA-GGEFVRIGLSATIEPL 220 (876)
T ss_pred HhCCCCEEEecHHHHHHHhcChhH-HHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc-CCCCeEEEEecccCCH
Confidence 888899999999999877754332 12467899999999999998888877777777665332 3568999999999852
Q ss_pred --hHhHHhhhcc--CcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHH---Hh
Q psy16310 1003 --LKNSLNLKKG--QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI---LQ 1075 (1493)
Q Consensus 1003 --~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l---~~ 1075 (1493)
+..++..... ......+... .......+.+.. . ...+ ...........++..+ ..
T Consensus 221 ~~va~~L~~~~~~~~~r~~~iv~~-----------~~~k~~~i~v~~--p-~~~l----~~~~~~~~~~~l~~~L~~~i~ 282 (876)
T PRK13767 221 EEVAKFLVGYEDDGEPRDCEIVDA-----------RFVKPFDIKVIS--P-VDDL----IHTPAEEISEALYETLHELIK 282 (876)
T ss_pred HHHHHHhcCccccCCCCceEEEcc-----------CCCccceEEEec--c-Cccc----cccccchhHHHHHHHHHHHHh
Confidence 2222210000 0000000000 000000000000 0 0000 0011111111222222 23
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhc------CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEE
Q psy16310 1076 HPGRTLVFCNSISSVKRLTQLLTML------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 1149 (1493)
Q Consensus 1076 ~~~~~IVF~~s~~~~~~l~~~L~~~------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~V 1149 (1493)
..+++||||||+..|+.++..|... +..+..|||+|++.+|..++++|++|+++|||||+++++|||+|+|++|
T Consensus 283 ~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~V 362 (876)
T PRK13767 283 EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLV 362 (876)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEE
Confidence 4678999999999999999999873 4678999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChhHHHHHHhccCCC-CCCCeEEEEecC
Q psy16310 1150 IHYHVPRTSEIYIHRSGRTARA-NNEGLTLVLIES 1183 (1493)
Q Consensus 1150 I~~d~p~s~~~yiqr~GR~gR~-g~~G~~i~l~~~ 1183 (1493)
|+|+.|.+...|+||+||+||. |..+.+++++..
T Consensus 363 I~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 363 VLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred EEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 9999999999999999999987 444555555443
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=427.25 Aligned_cols=330 Identities=22% Similarity=0.332 Sum_probs=255.5
Q ss_pred HHHH-CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHH
Q psy16310 782 ALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELE 860 (1493)
Q Consensus 782 ~l~~-~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (1493)
.|++ +||.+|+|+|.++|+. +..|+|+++++|||+|||++|++|++..
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~-il~g~dvlv~~PTG~GKTl~y~lpal~~------------------------------ 52 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISH-VLDGRDVLVVMPTGGGKSLCYQVPALLL------------------------------ 52 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCccHhHHHHHHHHHc------------------------------
Confidence 3443 7999999999999985 5578899999999999999999998731
Q ss_pred HhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH----hcCCCcEEEECcHH
Q psy16310 861 EESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI----LNKCPHILVATPGR 936 (1493)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~----l~~~~~IlV~TP~r 936 (1493)
+..++||+|+++|+.|+...++.+ ++.+..+.++.+....... .....+|+++||++
T Consensus 53 ---------------~g~~lVisPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~ 113 (591)
T TIGR01389 53 ---------------KGLTVVISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPER 113 (591)
T ss_pred ---------------CCcEEEEcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhH
Confidence 124899999999999999999875 4788888888876654432 23567999999999
Q ss_pred HHHHHHhCcCccccccceeEEEecccchhccCC--ChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCc
Q psy16310 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014 (1493)
Q Consensus 937 l~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~--~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~ 1014 (1493)
|........ ....++++|||||||++.+|| |.+.+..+...... -+..++++||||++..+...+..
T Consensus 114 l~~~~~~~~---l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~---~~~~~vi~lTAT~~~~~~~~i~~----- 182 (591)
T TIGR01389 114 LEQDYFLNM---LQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAER---FPQVPRIALTATADAETRQDIRE----- 182 (591)
T ss_pred hcChHHHHH---HhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHh---CCCCCEEEEEeCCCHHHHHHHHH-----
Confidence 864322211 123478999999999999987 45555554433211 13455999999999776554322
Q ss_pred CcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CCcEEEEecchhhHHHH
Q psy16310 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRL 1093 (1493)
Q Consensus 1015 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l 1093 (1493)
.+.+..+..+.. ... ..++ .+.......+...+..++... +.++||||+|+..|+.+
T Consensus 183 -----------------~l~~~~~~~~~~--~~~-r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~l 240 (591)
T TIGR01389 183 -----------------LLRLADANEFIT--SFD-RPNL--RFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEEL 240 (591)
T ss_pred -----------------HcCCCCCCeEec--CCC-CCCc--EEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHH
Confidence 222222222110 000 0111 122233345566667777655 57899999999999999
Q ss_pred HHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCC
Q psy16310 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173 (1493)
Q Consensus 1094 ~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~ 1173 (1493)
+..|...|+.+..|||+|+..+|..+++.|.+|+++|||||+++++|||+|+|++||||++|.+.+.|+||+|||||.|.
T Consensus 241 a~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~ 320 (591)
T TIGR01389 241 AERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGL 320 (591)
T ss_pred HHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCHHHHHHHHH
Q psy16310 1174 EGLTLVLIESDEIPLYIKMFN 1194 (1493)
Q Consensus 1174 ~G~~i~l~~~~e~~~~~~~~~ 1194 (1493)
.|.|++++++.+...++.+..
T Consensus 321 ~~~~il~~~~~d~~~~~~~i~ 341 (591)
T TIGR01389 321 PAEAILLYSPADIALLKRRIE 341 (591)
T ss_pred CceEEEecCHHHHHHHHHHHh
Confidence 999999999998887776654
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=424.92 Aligned_cols=373 Identities=19% Similarity=0.292 Sum_probs=259.2
Q ss_pred CCHHHHHHHHH-CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHH
Q psy16310 158 IPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 236 (1493)
Q Consensus 158 l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (1493)
+.......|++ .||..|+|+|.++|+ ++..|+|+++++|||||||++|++|++..
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~-~il~g~dvlv~apTGsGKTl~y~lpal~~----------------------- 64 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIID-AVLSGRDCLVVMPTGGGKSLCYQIPALVL----------------------- 64 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHH-HHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------------------
Confidence 33444444544 599999999999998 56688999999999999999999998731
Q ss_pred HHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH----hcCCCCE
Q psy16310 237 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI----LNKCPHI 312 (1493)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~----l~~~~~I 312 (1493)
...+|||+||++|+.|+.+.+..+ ++.+..+.++......... .....+|
T Consensus 65 ----------------------~g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~i 118 (607)
T PRK11057 65 ----------------------DGLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKL 118 (607)
T ss_pred ----------------------CCCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcE
Confidence 135899999999999999998775 5777778887766554332 2345789
Q ss_pred EEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcC--ChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 313 iV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~--~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+++||++|........+ ...++++|||||||++++|+ |.+.+..+-.....
T Consensus 119 l~~tPe~l~~~~~~~~l---~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~------------------------ 171 (607)
T PRK11057 119 LYIAPERLMMDNFLEHL---AHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQR------------------------ 171 (607)
T ss_pred EEEChHHhcChHHHHHH---hhCCCCEEEEeCccccccccCcccHHHHHHHHHHHh------------------------
Confidence 99999998632111111 12368999999999999876 55555443221100
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
.+..+++++|||++......+. ..+....+....
T Consensus 172 -------~p~~~~v~lTAT~~~~~~~di~----------------------~~l~l~~~~~~~----------------- 205 (607)
T PRK11057 172 -------FPTLPFMALTATADDTTRQDIV----------------------RLLGLNDPLIQI----------------- 205 (607)
T ss_pred -------CCCCcEEEEecCCChhHHHHHH----------------------HHhCCCCeEEEE-----------------
Confidence 1246899999999876543211 011100000000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhh-CCCcEEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ-HPGRTLV 549 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~II 549 (1493)
..... +.+ .+...........+..++.. .+.++||
T Consensus 206 -~~~~r----------------------------~nl---------------~~~v~~~~~~~~~l~~~l~~~~~~~~II 241 (607)
T PRK11057 206 -SSFDR----------------------------PNI---------------RYTLVEKFKPLDQLMRYVQEQRGKSGII 241 (607)
T ss_pred -CCCCC----------------------------Ccc---------------eeeeeeccchHHHHHHHHHhcCCCCEEE
Confidence 00000 000 00000011122233444433 3568999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHH
Q psy16310 550 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629 (1493)
Q Consensus 550 F~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yi 629 (1493)
||+|+..|+.++..|...++.+..+||+|++.+|..+++.|+.|+++|||||+++++|||+|+|++||+||+|.|..+|+
T Consensus 242 Fc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~ 321 (607)
T PRK11057 242 YCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYY 321 (607)
T ss_pred EECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCeEEEEecCCcchhhhhhhhhhccchHHHHHHHhhhcccccchhhhhhhhhhhhccC
Q psy16310 630 HRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRKQ 698 (1493)
Q Consensus 630 QR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~~~~~~e~~e~~~~~~~~~e~~~~~vss~k~k~kr~~ 698 (1493)
||+|||||.|.+|.|++|+++.|...+..+........ ...........+........|.++.+-+..
T Consensus 322 Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~Crr~~~l~yf 389 (607)
T PRK11057 322 QETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQ-QQDIERHKLNAMGAFAEAQTCRRLVLLNYF 389 (607)
T ss_pred HHhhhccCCCCCceEEEEeCHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHHhcccCHHHHHHHHh
Confidence 99999999999999999999999887776654332211 111111122233344445556665544443
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=435.55 Aligned_cols=348 Identities=22% Similarity=0.294 Sum_probs=258.7
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccc
Q psy16310 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 231 (1493)
.|++++|++.+++.+.+.||.+|+|+|.++++..+..|+|++++||||||||++|.+|+++++.
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~---------------- 65 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA---------------- 65 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh----------------
Confidence 4788999999999999999999999999999965778999999999999999999999998773
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCC
Q psy16310 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311 (1493)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~ 311 (1493)
++.++|||+||++||.|+++.+..+.. .++++..++|+...... ....++
T Consensus 66 --------------------------~~~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~ 115 (737)
T PRK02362 66 --------------------------RGGKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDND 115 (737)
T ss_pred --------------------------cCCcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCC
Confidence 234799999999999999999998754 48999999998765442 224579
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1493)
|+||||+++..++.+... .+.++++||+||||.+.+.+++..++.++.++...
T Consensus 116 IiV~Tpek~~~llr~~~~---~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~------------------------ 168 (737)
T PRK02362 116 IIVATSEKVDSLLRNGAP---WLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRL------------------------ 168 (737)
T ss_pred EEEECHHHHHHHHhcChh---hhhhcCEEEEECccccCCCcchHHHHHHHHHHHhc------------------------
Confidence 999999999888875432 35689999999999998889999999998877432
Q ss_pred ccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhh
Q psy16310 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 471 (1493)
Q Consensus 392 ~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1493)
....|++++|||+++.- . +..|+.... +..... +..+.. .+..
T Consensus 169 ------~~~~qii~lSATl~n~~-~-----------------------la~wl~~~~-----~~~~~r-pv~l~~-~v~~ 211 (737)
T PRK02362 169 ------NPDLQVVALSATIGNAD-E-----------------------LADWLDAEL-----VDSEWR-PIDLRE-GVFY 211 (737)
T ss_pred ------CCCCcEEEEcccCCCHH-H-----------------------HHHHhCCCc-----ccCCCC-CCCCee-eEec
Confidence 23479999999997521 1 112221100 000000 000000 0000
Q ss_pred ccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccc-ccCchhhHHHHHHhhCCCcEEEE
Q psy16310 472 KHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILC-KHDEKDSYLYYFILQHPGRTLVF 550 (1493)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~IIF 550 (1493)
. .. . .+ . . ....... ........+...+ ..++++|||
T Consensus 212 ~--~~---~-~~-------------------~--------------~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~LVF 249 (737)
T PRK02362 212 G--GA---I-HF-------------------D--------------D--SQREVEVPSKDDTLNLVLDTL-EEGGQCLVF 249 (737)
T ss_pred C--Ce---e-cc-------------------c--------------c--ccccCCCccchHHHHHHHHHH-HcCCCeEEE
Confidence 0 00 0 00 0 0 0000000 0011222222222 356799999
Q ss_pred ecchhhHHHHHHHHHhc------------------------------------CCCccccccCCCHHHHHHHHHHHhcCC
Q psy16310 551 CNSISSVKRLTQLLTML------------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQN 594 (1493)
Q Consensus 551 ~~s~~~a~~L~~~L~~~------------------------------------~~~~~~lhg~~~~~~R~~vl~~Fr~g~ 594 (1493)
|+|+..|+.++..|... ..+++.|||+|++.+|..+++.|++|.
T Consensus 250 ~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~ 329 (737)
T PRK02362 250 VSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRL 329 (737)
T ss_pred EeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCC
Confidence 99999999988877532 136788999999999999999999999
Q ss_pred CeEEEEechhhccCCCCCCcEEEE----ec-----CCCChHHHHHHHhccccCCCC--CeEEEEecCC
Q psy16310 595 NSILLATDVAARGLDIPGIEHVIH----YH-----VPRTSEIYIHRSGRTARANNE--GLTVVLIESD 651 (1493)
Q Consensus 595 ~~VLVaTdv~~rGlDip~v~~VI~----yd-----~P~s~~~yiQR~GRagR~g~~--G~~i~l~~~~ 651 (1493)
++|||||+++++|+|+|++++||+ || .|.++.+|+||+|||||.|.. |.|++++.+.
T Consensus 330 i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 330 IKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred CeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 999999999999999999999997 77 689999999999999999875 9999998664
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=415.07 Aligned_cols=320 Identities=18% Similarity=0.218 Sum_probs=234.3
Q ss_pred CCCCCCcHHHHhhHHHhhccCC-cEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 786 KGFKTPTKIQSMVMPSALLARK-DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~-dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
.||+ |||||.++||.++ .|+ ++++++|||||||.+|.++++...
T Consensus 12 ~G~~-PtpiQ~~~i~~il-~G~~~v~~~apTGSGKTaa~aafll~~~--------------------------------- 56 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFV-AGQPPESCSTPTGLGKTSIIAAWLLAVE--------------------------------- 56 (844)
T ss_pred hCCC-CCHHHHHHHHHHH-cCCCcceEecCCCCcccHHHHHhhcccc---------------------------------
Confidence 4998 9999999999665 555 688899999999998765555211
Q ss_pred cchhhhhccCCCeE-EEEEcccHHHHHHHHHHHHHhhCCC-----------------------CcEEEEEEcCCCHHHHH
Q psy16310 865 NTTEFVKKTRNKLY-ALILAPTRELAIQVQNHILDAGKYT-----------------------PVKVACVVGGMSTEKQL 920 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~-~lil~PTreLa~Q~~~~~~~~~~~~-----------------------~~~v~~~~gg~~~~~~~ 920 (1493)
.....++ .++++||||||.|+++.++++++.+ ++++.+++||.+...|+
T Consensus 57 -------~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~ 129 (844)
T TIGR02621 57 -------IGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW 129 (844)
T ss_pred -------ccccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH
Confidence 0112234 4457799999999999999998755 48899999999999999
Q ss_pred HHhcCCCcEEEECcHHHHHHHHhCcC-------------ccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCC
Q psy16310 921 RILNKCPHILVATPGRLWEFIQLGHF-------------HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 987 (1493)
Q Consensus 921 ~~l~~~~~IlV~TP~rl~~~l~~~~~-------------~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~ 987 (1493)
..+..+++|||||+ |++.++.+ +...+.++.+||||||| ++++|...+..|+..+......
T Consensus 130 ~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~ 203 (844)
T TIGR02621 130 MLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDF 203 (844)
T ss_pred HhcCCCCcEEEECH----HHHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCccc
Confidence 99999999999995 44544432 11136789999999999 7899999999999875221112
Q ss_pred CCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhh
Q psy16310 988 QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 1067 (1493)
Q Consensus 988 ~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 1067 (1493)
.++|+++||||++..+......... .+..+.+.........+.+. +.+....+..
T Consensus 204 rprQtLLFSAT~p~ei~~l~~~~~~------------------------~p~~i~V~~~~l~a~ki~q~-v~v~~e~Kl~ 258 (844)
T TIGR02621 204 LPLRVVELTATSRTDGPDRTTLLSA------------------------EDYKHPVLKKRLAAKKIVKL-VPPSDEKFLS 258 (844)
T ss_pred ccceEEEEecCCCccHHHHHHHHcc------------------------CCceeecccccccccceEEE-EecChHHHHH
Confidence 2479999999999765543321110 11111111111112222332 2222333332
Q ss_pred HHH----HHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHH-----HHHHHHhc----CC-------
Q psy16310 1068 YLY----YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL-----KNLDRFRD----QN------- 1127 (1493)
Q Consensus 1068 ~l~----~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~-----~~~~~F~~----g~------- 1127 (1493)
.+. ..+...++++||||||+..|+.++..|...++ ..+||+|++.+|. .++++|++ |.
T Consensus 259 ~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g 336 (844)
T TIGR02621 259 TMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQG 336 (844)
T ss_pred HHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhcccccccccccccc
Confidence 322 22334568899999999999999999998876 8899999999999 88999987 54
Q ss_pred CCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCC-CeEEEEecC
Q psy16310 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE-GLTLVLIES 1183 (1493)
Q Consensus 1128 ~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~-G~~i~l~~~ 1183 (1493)
..|||||+++++||||+. ++||++..| .++|+||+||+||+|+. |.++.++..
T Consensus 337 ~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 337 TVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred ceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 689999999999999986 899998877 68999999999999985 444666644
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=429.91 Aligned_cols=338 Identities=20% Similarity=0.254 Sum_probs=256.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcch
Q psy16310 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848 (1493)
Q Consensus 769 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 848 (1493)
.|+++++++.+++.|.+.||.+|+|+|.++|+..+..|+|++++||||||||++|.+|++++++.
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------------- 66 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------------- 66 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh---------------
Confidence 57889999999999999999999999999998767789999999999999999999999987742
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCc
Q psy16310 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928 (1493)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~ 928 (1493)
.+.++|||+||++||.|+++.+..+. ..++++..++|+......+ ...++
T Consensus 67 --------------------------~~~~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~~---~~~~~ 116 (720)
T PRK00254 67 --------------------------EGGKAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDEW---LGKYD 116 (720)
T ss_pred --------------------------cCCeEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchhh---hccCC
Confidence 23479999999999999999998864 4689999999987654332 24579
Q ss_pred EEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHh
Q psy16310 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008 (1493)
Q Consensus 929 IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~ 1008 (1493)
|+|+||+++..++..+. ..+.++++||+||+|.+.+.++...+..++..+. ...|++++|||+++. .....
T Consensus 117 IiV~Tpe~~~~ll~~~~---~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~-----~~~qiI~lSATl~n~-~~la~ 187 (720)
T PRK00254 117 IIIATAEKFDSLLRHGS---SWIKDVKLVVADEIHLIGSYDRGATLEMILTHML-----GRAQILGLSATVGNA-EELAE 187 (720)
T ss_pred EEEEcHHHHHHHHhCCc---hhhhcCCEEEEcCcCccCCccchHHHHHHHHhcC-----cCCcEEEEEccCCCH-HHHHH
Confidence 99999999988876543 2467899999999999999899999999988873 568999999999853 22111
Q ss_pred hhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecc-------cchhhHHHHHHHhCCCcEE
Q psy16310 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-------DEKDSYLYYFILQHPGRTL 1081 (1493)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~k~~~l~~~l~~~~~~~I 1081 (1493)
+. +... ..... .+... .. ....+....... ......+... ...++++|
T Consensus 188 wl-~~~~--~~~~~--------------rpv~l--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~vL 242 (720)
T PRK00254 188 WL-NAEL--VVSDW--------------RPVKL--RK-----GVFYQGFLFWEDGKIERFPNSWESLVYDA-VKKGKGAL 242 (720)
T ss_pred Hh-CCcc--ccCCC--------------CCCcc--ee-----eEecCCeeeccCcchhcchHHHHHHHHHH-HHhCCCEE
Confidence 11 1000 00000 00000 00 000000000000 0111122222 23578999
Q ss_pred EEecchhhHHHHHHHHHh---------------------------------cCCCccccccCCCHHHHHHHHHHHhcCCC
Q psy16310 1082 VFCNSISSVKRLTQLLTM---------------------------------LKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128 (1493)
Q Consensus 1082 VF~~s~~~~~~l~~~L~~---------------------------------~~~~~~~lhg~m~~~~R~~~~~~F~~g~~ 1128 (1493)
|||+|+..|+.++..|.. ...++..|||+|++.+|..+++.|++|.+
T Consensus 243 VF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i 322 (720)
T PRK00254 243 VFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLI 322 (720)
T ss_pred EEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCC
Confidence 999999999888766632 12358899999999999999999999999
Q ss_pred CeEEeehhhhccccCCCccEEEE-------ecCCC-ChhHHHHHHhccCCCC--CCCeEEEEecCCC
Q psy16310 1129 SILLATDVAARGLDIPGIEHVIH-------YHVPR-TSEIYIHRSGRTARAN--NEGLTLVLIESDE 1185 (1493)
Q Consensus 1129 ~VLVaTdv~~~GiDip~v~~VI~-------~d~p~-s~~~yiqr~GR~gR~g--~~G~~i~l~~~~e 1185 (1493)
+|||||+++++|+|+|++++||. ++.|. +..+|+||+|||||.| ..|.+++++.+.+
T Consensus 323 ~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 323 KVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred eEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 99999999999999999999994 55544 5678999999999975 6799999998765
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=429.76 Aligned_cols=360 Identities=20% Similarity=0.269 Sum_probs=251.9
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHH
Q psy16310 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 237 (1493)
Q Consensus 158 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 237 (1493)
+++.+.+.+.+ +|..|||+|.++|| .+..|+|++++||||||||++|++|+++++......
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~-~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~----------------- 78 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIP-LIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE----------------- 78 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHH-HHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc-----------------
Confidence 56777776554 89999999999999 566889999999999999999999999988642110
Q ss_pred HHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHH-------h----cCCC-CeEEEEEEcCCCHHHHHHH
Q psy16310 238 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD-------A----GKYT-PVKVACVVGGMSTEKQLRI 305 (1493)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~-------l----~~~~-~i~v~~~~G~~~~~~~~~~ 305 (1493)
....++.++|||+|||+||.|+++.+.. + +... ++++...+|+++.......
T Consensus 79 ----------------~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~ 142 (876)
T PRK13767 79 ----------------GELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKM 142 (876)
T ss_pred ----------------cCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHH
Confidence 0113457899999999999999876542 2 2233 7899999999998888778
Q ss_pred hcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchh
Q psy16310 306 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385 (1493)
Q Consensus 306 l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~ 385 (1493)
+.++++|+|+||++|..++...... ..|.++++|||||||.+++..++.++...+.++....
T Consensus 143 l~~~p~IlVtTPE~L~~ll~~~~~~-~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~----------------- 204 (876)
T PRK13767 143 LKKPPHILITTPESLAILLNSPKFR-EKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA----------------- 204 (876)
T ss_pred HhCCCCEEEecHHHHHHHhcChhHH-HHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc-----------------
Confidence 8888999999999998777543321 2467899999999999998888888888887764321
Q ss_pred hhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccc
Q psy16310 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465 (1493)
Q Consensus 386 ~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1493)
....|++++|||+++. .... .++...... ....
T Consensus 205 ------------~~~~q~IglSATl~~~-~~va-----------------------~~L~~~~~~--------~~~r--- 237 (876)
T PRK13767 205 ------------GGEFVRIGLSATIEPL-EEVA-----------------------KFLVGYEDD--------GEPR--- 237 (876)
T ss_pred ------------CCCCeEEEEecccCCH-HHHH-----------------------HHhcCcccc--------CCCC---
Confidence 2457999999999752 1111 111000000 0000
Q ss_pred hhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCC
Q psy16310 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 545 (1493)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 545 (1493)
.. ..........+ ......+.. .+...............+...+. ..+
T Consensus 238 ~~-~iv~~~~~k~~--~i~v~~p~~----------------------------~l~~~~~~~~~~~l~~~L~~~i~-~~~ 285 (876)
T PRK13767 238 DC-EIVDARFVKPF--DIKVISPVD----------------------------DLIHTPAEEISEALYETLHELIK-EHR 285 (876)
T ss_pred ce-EEEccCCCccc--eEEEeccCc----------------------------cccccccchhHHHHHHHHHHHHh-cCC
Confidence 00 00000000000 000000000 00000000000111222333332 357
Q ss_pred cEEEEecchhhHHHHHHHHHhc------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEe
Q psy16310 546 RTLVFCNSISSVKRLTQLLTML------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 619 (1493)
Q Consensus 546 ~~IIF~~s~~~a~~L~~~L~~~------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~y 619 (1493)
++||||+|+..|+.++..|... +..+..|||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+|
T Consensus 286 ~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~ 365 (876)
T PRK13767 286 TTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLL 365 (876)
T ss_pred CEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEe
Confidence 8999999999999999999763 4678999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHhccccCC-CCCeEEEEec
Q psy16310 620 HVPRTSEIYIHRSGRTARAN-NEGLTVVLIE 649 (1493)
Q Consensus 620 d~P~s~~~yiQR~GRagR~g-~~G~~i~l~~ 649 (1493)
+.|.++..|+||+|||||.+ ..+.++++..
T Consensus 366 ~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 366 GSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred CCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 99999999999999999864 3345555543
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=418.93 Aligned_cols=328 Identities=22% Similarity=0.331 Sum_probs=247.5
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
+||..|+|+|.++|+ ++..|+|+++++|||+|||++|++|++..
T Consensus 9 fg~~~fr~~Q~~~i~-~il~g~dvlv~~PTG~GKTl~y~lpal~~----------------------------------- 52 (591)
T TIGR01389 9 FGYDDFRPGQEEIIS-HVLDGRDVLVVMPTGGGKSLCYQVPALLL----------------------------------- 52 (591)
T ss_pred cCCCCCCHHHHHHHH-HHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------------------------------
Confidence 799999999999998 56678999999999999999999998721
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH----hcCCCCEEEeCcHHHHHHH
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI----LNKCPHILVATPGRLWEFI 324 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~----l~~~~~IiV~TP~~L~~~l 324 (1493)
+..++||+|+++|+.|+...+..+ ++.+..+.++.+....... ..+..+|+++||++|....
T Consensus 53 ----------~g~~lVisPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~ 118 (591)
T TIGR01389 53 ----------KGLTVVISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDY 118 (591)
T ss_pred ----------CCcEEEEcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChH
Confidence 134899999999999999999875 5778888888776654332 2356799999999986432
Q ss_pred HcCCccccccccccEEEEecCchhhhcC--ChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCce
Q psy16310 325 QLGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQ 402 (1493)
Q Consensus 325 ~~~~~~~~~l~~i~~lViDEAh~ll~~~--~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 402 (1493)
..... ...++++|||||||++.+|| |.+.+..+....... +..+
T Consensus 119 ~~~~l---~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~-------------------------------~~~~ 164 (591)
T TIGR01389 119 FLNML---QRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERF-------------------------------PQVP 164 (591)
T ss_pred HHHHH---hcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhC-------------------------------CCCC
Confidence 22122 23478999999999998876 556555554332111 1235
Q ss_pred EEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHH
Q psy16310 403 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 482 (1493)
Q Consensus 403 ~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1493)
++++|||++..+...+. .++....+.... ...
T Consensus 165 vi~lTAT~~~~~~~~i~----------------------~~l~~~~~~~~~------------------~~~-------- 196 (591)
T TIGR01389 165 RIALTATADAETRQDIR----------------------ELLRLADANEFI------------------TSF-------- 196 (591)
T ss_pred EEEEEeCCCHHHHHHHH----------------------HHcCCCCCCeEe------------------cCC--------
Confidence 99999999876543221 111110000000 000
Q ss_pred HHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcEEEEecchhhHHHHH
Q psy16310 483 FILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLT 561 (1493)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~ 561 (1493)
..+. ..+.......+...+..++... +.++||||+|+..++.++
T Consensus 197 --------------------~r~n---------------l~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la 241 (591)
T TIGR01389 197 --------------------DRPN---------------LRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELA 241 (591)
T ss_pred --------------------CCCC---------------cEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHH
Confidence 0000 0000011122344455555554 468999999999999999
Q ss_pred HHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCC
Q psy16310 562 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641 (1493)
Q Consensus 562 ~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~ 641 (1493)
..|...++.+..+||+|+..+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.|+..|+||+|||||.|.+
T Consensus 242 ~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~ 321 (591)
T TIGR01389 242 ERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLP 321 (591)
T ss_pred HHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCCcchhhhhhhhhh
Q psy16310 642 GLTVVLIESDEIPLKTKFNLQE 663 (1493)
Q Consensus 642 G~~i~l~~~~e~~~~~~l~~~~ 663 (1493)
|.|++++++.|......+....
T Consensus 322 ~~~il~~~~~d~~~~~~~i~~~ 343 (591)
T TIGR01389 322 AEAILLYSPADIALLKRRIEQS 343 (591)
T ss_pred ceEEEecCHHHHHHHHHHHhcc
Confidence 9999999999988777765443
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=406.51 Aligned_cols=315 Identities=20% Similarity=0.233 Sum_probs=230.1
Q ss_pred HHHHHH-HHCCCCCCcHHHHhhHHHhhccC-----CcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHH
Q psy16310 778 TIIRAL-YQKGFKTPTKIQSMVMPSALLAR-----KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 851 (1493)
Q Consensus 778 ~l~~~l-~~~g~~~pt~iQ~~~i~~~l~~~-----~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 851 (1493)
.+.+.+ ..++| +||++|.++|+.++.+. .+++++||||||||++|++|++..+.
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------------------- 308 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------------------- 308 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-------------------
Confidence 344444 45677 69999999999765432 48999999999999999999997662
Q ss_pred HHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHH---HHHhcC-CC
Q psy16310 852 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ---LRILNK-CP 927 (1493)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~---~~~l~~-~~ 927 (1493)
.+.+++||+||++||.|+++.+++++..+++++.+++|+.+.... ...+.. .+
T Consensus 309 -----------------------~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~ 365 (681)
T PRK10917 309 -----------------------AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEA 365 (681)
T ss_pred -----------------------cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCC
Confidence 345799999999999999999999998889999999999986443 333433 58
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
+|+||||+++.+. ..+.+++++|+||+|++.. .....+... ....++++||||+.+......
T Consensus 366 ~IvVgT~~ll~~~--------v~~~~l~lvVIDE~Hrfg~-----~qr~~l~~~-----~~~~~iL~~SATp~prtl~~~ 427 (681)
T PRK10917 366 DIVIGTHALIQDD--------VEFHNLGLVIIDEQHRFGV-----EQRLALREK-----GENPHVLVMTATPIPRTLAMT 427 (681)
T ss_pred CEEEchHHHhccc--------chhcccceEEEechhhhhH-----HHHHHHHhc-----CCCCCEEEEeCCCCHHHHHHH
Confidence 9999999987432 2366899999999998632 222222222 245789999999864322211
Q ss_pred hhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH---hCCCcEEEEe
Q psy16310 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL---QHPGRTLVFC 1084 (1493)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~---~~~~~~IVF~ 1084 (1493)
. .+ ......+.... .....+.... .... ....++..+. ..+.+++|||
T Consensus 428 ~--~g----------------------~~~~s~i~~~p--~~r~~i~~~~--~~~~-~~~~~~~~i~~~~~~g~q~~v~~ 478 (681)
T PRK10917 428 A--YG----------------------DLDVSVIDELP--PGRKPITTVV--IPDS-RRDEVYERIREEIAKGRQAYVVC 478 (681)
T ss_pred H--cC----------------------CCceEEEecCC--CCCCCcEEEE--eCcc-cHHHHHHHHHHHHHcCCcEEEEE
Confidence 0 00 00011111000 0011122211 1222 2222333332 4567999999
Q ss_pred cch--------hhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecC
Q psy16310 1085 NSI--------SSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 1154 (1493)
Q Consensus 1085 ~s~--------~~~~~l~~~L~~~--~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~ 1154 (1493)
+++ ..+..+++.|... ++.+..+||+|++.+|..++++|++|+++|||||+++++|+|+|++++||++++
T Consensus 479 ~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~ 558 (681)
T PRK10917 479 PLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENA 558 (681)
T ss_pred cccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCC
Confidence 964 3566777787765 468999999999999999999999999999999999999999999999999999
Q ss_pred CC-ChhHHHHHHhccCCCCCCCeEEEEec
Q psy16310 1155 PR-TSEIYIHRSGRTARANNEGLTLVLIE 1182 (1493)
Q Consensus 1155 p~-s~~~yiqr~GR~gR~g~~G~~i~l~~ 1182 (1493)
|. +...|.||+||+||.|..|.|++++.
T Consensus 559 ~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 559 ERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred CCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 98 46788889999999999999999995
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=416.19 Aligned_cols=345 Identities=21% Similarity=0.274 Sum_probs=253.5
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccc
Q psy16310 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 231 (1493)
+|.++++++.+.+.+.+.||..|+|+|.++++..+..|+|++++||||||||++|.+|+++++..
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------------- 66 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------------- 66 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh---------------
Confidence 47789999999999999999999999999998667789999999999999999999999988742
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCC
Q psy16310 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311 (1493)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~ 311 (1493)
.+.++|||+||++||.|+++.+..+. ..++++..++|+......+ ...++
T Consensus 67 --------------------------~~~~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~~---~~~~~ 116 (720)
T PRK00254 67 --------------------------EGGKAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDEW---LGKYD 116 (720)
T ss_pred --------------------------cCCeEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchhh---hccCC
Confidence 23579999999999999999998764 4689999999998754432 34579
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1493)
|+|+||+++..++.+... ++.++++|||||+|.+.+.+++..++.++.++.
T Consensus 117 IiV~Tpe~~~~ll~~~~~---~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~-------------------------- 167 (720)
T PRK00254 117 IIIATAEKFDSLLRHGSS---WIKDVKLVVADEIHLIGSYDRGATLEMILTHML-------------------------- 167 (720)
T ss_pred EEEEcHHHHHHHHhCCch---hhhcCCEEEEcCcCccCCccchHHHHHHHHhcC--------------------------
Confidence 999999999888765432 366899999999999988889999998887652
Q ss_pred ccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhh
Q psy16310 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 471 (1493)
Q Consensus 392 ~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1493)
...|++++|||+++. ..+ ..|+.... ... ... +..+.. .+..
T Consensus 168 -------~~~qiI~lSATl~n~-~~l-----------------------a~wl~~~~--~~~---~~r-pv~l~~-~~~~ 209 (720)
T PRK00254 168 -------GRAQILGLSATVGNA-EEL-----------------------AEWLNAEL--VVS---DWR-PVKLRK-GVFY 209 (720)
T ss_pred -------cCCcEEEEEccCCCH-HHH-----------------------HHHhCCcc--ccC---CCC-CCccee-eEec
Confidence 236999999999752 211 12221100 000 000 000000 0000
Q ss_pred ccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEe
Q psy16310 472 KHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFC 551 (1493)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~ 551 (1493)
. .+.++ .. .. .. .........+...+. .++++||||
T Consensus 210 ~-----~~~~~-----~~---------------~~-------------~~-----~~~~~~~~~~~~~i~-~~~~vLVF~ 245 (720)
T PRK00254 210 Q-----GFLFW-----ED---------------GK-------------IE-----RFPNSWESLVYDAVK-KGKGALVFV 245 (720)
T ss_pred C-----Ceeec-----cC---------------cc-------------hh-----cchHHHHHHHHHHHH-hCCCEEEEE
Confidence 0 00000 00 00 00 000011122333332 467999999
Q ss_pred cchhhHHHHHHHHHh---------------------------------cCCCccccccCCCHHHHHHHHHHHhcCCCeEE
Q psy16310 552 NSISSVKRLTQLLTM---------------------------------LKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598 (1493)
Q Consensus 552 ~s~~~a~~L~~~L~~---------------------------------~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VL 598 (1493)
+|+..|+.++..|.. ...+++.|||+|++.+|..+++.|++|.++||
T Consensus 246 ~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VL 325 (720)
T PRK00254 246 NTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVI 325 (720)
T ss_pred cChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEE
Confidence 999999887766632 13468899999999999999999999999999
Q ss_pred EEechhhccCCCCCCcEEEE-------ecCCC-ChHHHHHHHhccccCC--CCCeEEEEecCCc
Q psy16310 599 LATDVAARGLDIPGIEHVIH-------YHVPR-TSEIYIHRSGRTARAN--NEGLTVVLIESDE 652 (1493)
Q Consensus 599 VaTdv~~rGlDip~v~~VI~-------yd~P~-s~~~yiQR~GRagR~g--~~G~~i~l~~~~e 652 (1493)
|||+++++|+|+|++++||+ |+.|. .+.+|+||+|||||.| ..|.|++++.+.+
T Consensus 326 vaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 326 TATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred EeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 99999999999999999994 55554 5679999999999965 5699999987654
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=391.97 Aligned_cols=340 Identities=23% Similarity=0.319 Sum_probs=272.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHH
Q psy16310 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 854 (1493)
Q Consensus 775 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 854 (1493)
|++.+.+.++.. |..|||.|.+|||. +.+|+|++++||||||||+|+.+|++..++....
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~-i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~------------------ 67 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPE-IHSGENVLIIAPTGSGKTEAAFLPVINELLSLGK------------------ 67 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHH-HhCCCceEEEcCCCCChHHHHHHHHHHHHHhccC------------------
Confidence 789999999888 99999999999995 5599999999999999999999999999976420
Q ss_pred HHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECc
Q psy16310 855 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 934 (1493)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP 934 (1493)
.....+..||||+|.|+|...+...+...+..+|+.+..-+|+++..+..+.+.+.|||+|+||
T Consensus 68 ----------------~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTP 131 (814)
T COG1201 68 ----------------GKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTP 131 (814)
T ss_pred ----------------CCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeCh
Confidence 1234578999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCc
Q psy16310 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014 (1493)
Q Consensus 935 ~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~ 1014 (1493)
+.|.-++.... ....|.+++++|+||.|.+.+...+.++.--+++|..... ..|.+++|||..+...- .
T Consensus 132 EsL~lll~~~~-~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~--~~qRIGLSATV~~~~~v-a------- 200 (814)
T COG1201 132 ESLAILLNSPK-FRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAG--DFQRIGLSATVGPPEEV-A------- 200 (814)
T ss_pred hHHHHHhcCHH-HHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCc--ccEEEeehhccCCHHHH-H-------
Confidence 99877765432 2345889999999999999988888888888888865433 78999999999743221 1
Q ss_pred CcccccCCCchhHHHHhHhccCC--CcEEeccccccccccceeeEEEec----------ccchhhHHHHHHHhCCCcEEE
Q psy16310 1015 KSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCK----------HDEKDSYLYYFILQHPGRTLV 1082 (1493)
Q Consensus 1015 ~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----------~~~k~~~l~~~l~~~~~~~IV 1082 (1493)
.++.-.+ -.++...... .... .+..+ .......+..++.++ ..+||
T Consensus 201 ----------------rfL~g~~~~~~Iv~~~~~k----~~~i-~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~-~ttLI 258 (814)
T COG1201 201 ----------------KFLVGFGDPCEIVDVSAAK----KLEI-KVISPVEDLIYDEELWAALYERIAELVKKH-RTTLI 258 (814)
T ss_pred ----------------HHhcCCCCceEEEEcccCC----cceE-EEEecCCccccccchhHHHHHHHHHHHhhc-CcEEE
Confidence 1111111 1111111110 0000 01111 111223333334444 58999
Q ss_pred EecchhhHHHHHHHHHhcC-CCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHH
Q psy16310 1083 FCNSISSVKRLTQLLTMLK-CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 1161 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~~-~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~y 1161 (1493)
|+||+..++.++..|...+ ..+..|||.++..+|..+.++|++|+.+++|||+.++-|||+.+|+.||||+.|.+...+
T Consensus 259 F~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~ 338 (814)
T COG1201 259 FTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRF 338 (814)
T ss_pred EEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHH
Confidence 9999999999999999987 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCC-CCCCeEEEEecC
Q psy16310 1162 IHRSGRTARA-NNEGLTLVLIES 1183 (1493)
Q Consensus 1162 iqr~GR~gR~-g~~G~~i~l~~~ 1183 (1493)
+||+||+|+. |....++++...
T Consensus 339 lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 339 LQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred hHhccccccccCCcccEEEEecC
Confidence 9999999976 667888888766
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=409.98 Aligned_cols=345 Identities=17% Similarity=0.221 Sum_probs=253.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcch
Q psy16310 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848 (1493)
Q Consensus 769 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 848 (1493)
.|++++|++.+++.+...||+ ++|+|.++++. +..++|++++||||||||++|.+++++.+..
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~-l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------------- 64 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQ-LRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------------- 64 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHH-HhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------------
Confidence 478899999999999999997 99999999985 6788999999999999999999999887632
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCc
Q psy16310 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928 (1493)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~ 928 (1493)
+.++||++||++||.|+++.+.++. ..++++...+|+....... .+.++
T Consensus 65 ---------------------------~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~---~~~~d 113 (674)
T PRK01172 65 ---------------------------GLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPDF---IKRYD 113 (674)
T ss_pred ---------------------------CCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChhh---hccCC
Confidence 2369999999999999999998864 4678898899887543321 24579
Q ss_pred EEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHh
Q psy16310 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008 (1493)
Q Consensus 929 IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~ 1008 (1493)
|+|+||+++..++.++. ..+.++++||+||||++.+.+++..+..++..+... ..+.|++++|||+++.. ....
T Consensus 114 Iiv~Tpek~~~l~~~~~---~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~--~~~~riI~lSATl~n~~-~la~ 187 (674)
T PRK01172 114 VVILTSEKADSLIHHDP---YIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYV--NPDARILALSATVSNAN-ELAQ 187 (674)
T ss_pred EEEECHHHHHHHHhCCh---hHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhc--CcCCcEEEEeCccCCHH-HHHH
Confidence 99999999888876543 346789999999999999888888888888766432 35689999999997532 1111
Q ss_pred hhccCcCcccccCCCchhHHHHhHhccCC-CcEEeccccccccccceeeEEEecccc----hhhHHHHHHHhCCCcEEEE
Q psy16310 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDE----KDSYLYYFILQHPGRTLVF 1083 (1493)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----k~~~l~~~l~~~~~~~IVF 1083 (1493)
+. +... +.. .... +....+... .. ..+.... ....++......++++|||
T Consensus 188 wl-~~~~---~~~------------~~r~vpl~~~i~~~-------~~--~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF 242 (674)
T PRK01172 188 WL-NASL---IKS------------NFRPVPLKLGILYR-------KR--LILDGYERSQVDINSLIKETVNDGGQVLVF 242 (674)
T ss_pred Hh-CCCc---cCC------------CCCCCCeEEEEEec-------Ce--eeecccccccccHHHHHHHHHhCCCcEEEE
Confidence 11 0000 000 0000 000000000 00 0000000 1111222223457899999
Q ss_pred ecchhhHHHHHHHHHhc-------------------------CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhh
Q psy16310 1084 CNSISSVKRLTQLLTML-------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138 (1493)
Q Consensus 1084 ~~s~~~~~~l~~~L~~~-------------------------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~ 1138 (1493)
|++++.|+.++..|... ..++..|||+|++.+|..+++.|++|.++|||||++++
T Consensus 243 ~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la 322 (674)
T PRK01172 243 VSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLA 322 (674)
T ss_pred eccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhh
Confidence 99999999999888643 12467899999999999999999999999999999999
Q ss_pred ccccCCCccEEEEecC---------CCChhHHHHHHhccCCCCC--CCeEEEEecCCC-HHHHHHHH
Q psy16310 1139 RGLDIPGIEHVIHYHV---------PRTSEIYIHRSGRTARANN--EGLTLVLIESDE-IPLYIKMF 1193 (1493)
Q Consensus 1139 ~GiDip~v~~VI~~d~---------p~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~e-~~~~~~~~ 1193 (1493)
+|+|+|+..+|| ++. |.+..+|.||+|||||.|. .|.+++++...+ ...+.+++
T Consensus 323 ~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l 388 (674)
T PRK01172 323 AGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYL 388 (674)
T ss_pred ccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHH
Confidence 999999965554 443 4578899999999999984 678888876654 44555544
|
|
| >KOG0329|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=333.23 Aligned_cols=312 Identities=29% Similarity=0.530 Sum_probs=238.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
+.|.++-|.|++++++...||.+|+++|.+|||.+++ |.|++++|..|-|||.+|+|..++.+.
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqail-gmdvlcqaksgmgktavfvl~tlqqie--------------- 105 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL-GMDVLCQAKSGMGKTAVFVLATLQQIE--------------- 105 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhh-cchhheecccCCCceeeeehhhhhhcC---------------
Confidence 4588889999999999999999999999999999986 589999999999999999999998772
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
+......+|++|.|||||.|+.+...++++++ ++++..++||...+.....+.+.
T Consensus 106 ------------------------pv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~ 161 (387)
T KOG0329|consen 106 ------------------------PVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNC 161 (387)
T ss_pred ------------------------CCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCC
Confidence 11234679999999999999999999998875 49999999999999999999999
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhc-CChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~-~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
|+|+|+|||+++.+..+..+++ .++.+.|+||||.|+++ ..+..+..|++.
T Consensus 162 PhivVgTPGrilALvr~k~l~l---k~vkhFvlDEcdkmle~lDMrRDvQEifr~------------------------- 213 (387)
T KOG0329|consen 162 PHIVVGTPGRILALVRNRSLNL---KNVKHFVLDECDKMLEQLDMRRDVQEIFRM------------------------- 213 (387)
T ss_pred CeEEEcCcHHHHHHHHhccCch---hhcceeehhhHHHHHHHHHHHHHHHHHhhc-------------------------
Confidence 9999999999999998877654 48999999999999875 334445555532
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
++...|+++||||++.+++..+.-..-. |. .
T Consensus 214 --------tp~~KQvmmfsatlskeiRpvC~kFmQd------------------------Pm-----------------E 244 (387)
T KOG0329|consen 214 --------TPHEKQVMMFSATLSKEIRPVCHKFMQD------------------------PM-----------------E 244 (387)
T ss_pred --------CcccceeeeeeeecchhhHHHHHhhhcC------------------------ch-----------------h
Confidence 2566899999999998876554311100 00 0
Q ss_pred hhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcE
Q psy16310 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRT 547 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~ 547 (1493)
+.+....+. ....+.+.++......|...+..+|... -.++
T Consensus 245 i~vDdE~KL--------------------------------------tLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQV 286 (387)
T KOG0329|consen 245 IFVDDEAKL--------------------------------------TLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQV 286 (387)
T ss_pred hhccchhhh--------------------------------------hhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcce
Confidence 000000000 0001111222222233344444444333 2589
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
+||+.|... ++ | ..+ ||||++++||+||..|+.|||||+|.+..+
T Consensus 287 vIFvKsv~R---l~----------------------------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~Dt 331 (387)
T KOG0329|consen 287 VIFVKSVQR---LS----------------------------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDT 331 (387)
T ss_pred eEeeehhhh---hh----------------------------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchH
Confidence 999998653 00 3 223 899999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCc
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
|+||+|||||.|..|.+++|++..+
T Consensus 332 YlHrv~rAgrfGtkglaitfvs~e~ 356 (387)
T KOG0329|consen 332 YLHRVARAGRFGTKGLAITFVSDEN 356 (387)
T ss_pred HHHHhhhhhccccccceeehhcchh
Confidence 9999999999999999999997754
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=399.44 Aligned_cols=317 Identities=24% Similarity=0.297 Sum_probs=230.5
Q ss_pred HHHHHHHCCCCCCcHHHHhhHHHhhccC-----CcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHH
Q psy16310 779 IIRALYQKGFKTPTKIQSMVMPSALLAR-----KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 853 (1493)
Q Consensus 779 l~~~l~~~g~~~pt~iQ~~~i~~~l~~~-----~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 853 (1493)
+.+.+..++| +||++|.+||+.++.+. .+.+++||||||||++|++|++..+.
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~--------------------- 282 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE--------------------- 282 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH---------------------
Confidence 4456677899 79999999999766431 36899999999999999999997662
Q ss_pred HHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHH---HHHhc-CCCcE
Q psy16310 854 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ---LRILN-KCPHI 929 (1493)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~---~~~l~-~~~~I 929 (1493)
.+.+++|++||++||.|+++.+++++..+++++.+++|+...... ...+. ..++|
T Consensus 283 ---------------------~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~I 341 (630)
T TIGR00643 283 ---------------------AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHL 341 (630)
T ss_pred ---------------------cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCE
Confidence 245799999999999999999999998889999999999886653 33333 45799
Q ss_pred EEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhh
Q psy16310 930 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009 (1493)
Q Consensus 930 lV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~ 1009 (1493)
+||||+++.+. ..+.+++++||||+|++... +...+...... ....++++||||+.+.......
T Consensus 342 iVgT~~ll~~~--------~~~~~l~lvVIDEaH~fg~~----qr~~l~~~~~~---~~~~~~l~~SATp~prtl~l~~- 405 (630)
T TIGR00643 342 VVGTHALIQEK--------VEFKRLALVIIDEQHRFGVE----QRKKLREKGQG---GFTPHVLVMSATPIPRTLALTV- 405 (630)
T ss_pred EEecHHHHhcc--------ccccccceEEEechhhccHH----HHHHHHHhccc---CCCCCEEEEeCCCCcHHHHHHh-
Confidence 99999987532 23668999999999985321 22222222210 1257899999997543221110
Q ss_pred hccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH---hCCCcEEEEecc
Q psy16310 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL---QHPGRTLVFCNS 1086 (1493)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~---~~~~~~IVF~~s 1086 (1493)
.+. + ....+.... .....+... ......+ ..++..+. ..+.+++|||++
T Consensus 406 -~~~---------------------l-~~~~i~~~p--~~r~~i~~~--~~~~~~~-~~~~~~i~~~l~~g~q~~v~~~~ 457 (630)
T TIGR00643 406 -YGD---------------------L-DTSIIDELP--PGRKPITTV--LIKHDEK-DIVYEFIEEEIAKGRQAYVVYPL 457 (630)
T ss_pred -cCC---------------------c-ceeeeccCC--CCCCceEEE--EeCcchH-HHHHHHHHHHHHhCCcEEEEEcc
Confidence 000 0 000000000 000111111 1122222 33333333 346789999997
Q ss_pred h--------hhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCC
Q psy16310 1087 I--------SSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156 (1493)
Q Consensus 1087 ~--------~~~~~l~~~L~~~--~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~ 1156 (1493)
+ ..+..++..|... ++.+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++||++++|.
T Consensus 458 i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r 537 (630)
T TIGR00643 458 IEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAER 537 (630)
T ss_pred ccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCc
Confidence 6 4566777777653 67899999999999999999999999999999999999999999999999999997
Q ss_pred -ChhHHHHHHhccCCCCCCCeEEEEec
Q psy16310 1157 -TSEIYIHRSGRTARANNEGLTLVLIE 1182 (1493)
Q Consensus 1157 -s~~~yiqr~GR~gR~g~~G~~i~l~~ 1182 (1493)
+...|.||+||+||.|+.|.|++++.
T Consensus 538 ~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 538 FGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 57788889999999999999999983
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=390.85 Aligned_cols=320 Identities=19% Similarity=0.228 Sum_probs=227.5
Q ss_pred CCCCCChHHHHhhhhhhhccCC-cEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhh
Q psy16310 169 KGFKTPTKIQSMVMPSALLARK-DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 247 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~-dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1493)
.||+ |||||.++||.++ .|+ ++++++|||||||.+|+++++...
T Consensus 12 ~G~~-PtpiQ~~~i~~il-~G~~~v~~~apTGSGKTaa~aafll~~~--------------------------------- 56 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFV-AGQPPESCSTPTGLGKTSIIAAWLLAVE--------------------------------- 56 (844)
T ss_pred hCCC-CCHHHHHHHHHHH-cCCCcceEecCCCCcccHHHHHhhcccc---------------------------------
Confidence 4998 9999999999655 666 688889999999997765555210
Q ss_pred cchhhhhcccCceEEE-EEcccHHHHHHHHHHHHHhcCCC-----------------------CeEEEEEEcCCCHHHHH
Q psy16310 248 NTTEFVKKTRNKLYAL-ILAPTRELAIQVQNHILDAGKYT-----------------------PVKVACVVGGMSTEKQL 303 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aL-iL~PTreLa~Qi~~~~~~l~~~~-----------------------~i~v~~~~G~~~~~~~~ 303 (1493)
.....++.| +++|||+||.|+++.+..+++.+ ++++..++||.+...++
T Consensus 57 -------~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~ 129 (844)
T TIGR02621 57 -------IGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW 129 (844)
T ss_pred -------ccccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH
Confidence 011223445 57799999999999999988754 48899999999999999
Q ss_pred HHhcCCCCEEEeCcHHHHHHHHcCCc-------------cccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCC
Q psy16310 304 RILNKCPHILVATPGRLWEFIQLGHF-------------HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370 (1493)
Q Consensus 304 ~~l~~~~~IiV~TP~~L~~~l~~~~~-------------~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~ 370 (1493)
..+..+++|||+|+ +++.++.+ +...|.++++||||||| ++++|.+.+..|+..+....
T Consensus 130 ~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~-- 201 (844)
T TIGR02621 130 MLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPP-- 201 (844)
T ss_pred HhcCCCCcEEEECH----HHHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCc--
Confidence 99999999999995 55544433 11136689999999999 67999999999998642110
Q ss_pred CccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCc
Q psy16310 371 QPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPK 450 (1493)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (1493)
...++|+++||||++..+..+...... .+.
T Consensus 202 --------------------------~~rprQtLLFSAT~p~ei~~l~~~~~~------------------------~p~ 231 (844)
T TIGR02621 202 --------------------------DFLPLRVVELTATSRTDGPDRTTLLSA------------------------EDY 231 (844)
T ss_pred --------------------------ccccceEEEEecCCCccHHHHHHHHcc------------------------CCc
Confidence 012479999999998765443211000 000
Q ss_pred ccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccC
Q psy16310 451 IVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD 530 (1493)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (1493)
........ .. ... ... .+.....
T Consensus 232 ~i~V~~~~-l~------------------------------------------a~k-------------i~q-~v~v~~e 254 (844)
T TIGR02621 232 KHPVLKKR-LA------------------------------------------AKK-------------IVK-LVPPSDE 254 (844)
T ss_pred eeeccccc-cc------------------------------------------ccc-------------eEE-EEecChH
Confidence 00000000 00 000 000 0000001
Q ss_pred chh----hHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHH-----HHHHHHhc----CC---
Q psy16310 531 EKD----SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL-----KNLDRFRD----QN--- 594 (1493)
Q Consensus 531 ~k~----~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~-----~vl~~Fr~----g~--- 594 (1493)
.+. ..+...+...++++||||||+..|+.+++.|...++ ..+||+|++.+|. .+++.|++ |+
T Consensus 255 ~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~ 332 (844)
T TIGR02621 255 KFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRAR 332 (844)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhcccccccccc
Confidence 111 112223334567899999999999999999998776 8899999999999 88999987 54
Q ss_pred ----CeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCC-CeEEEEecC
Q psy16310 595 ----NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE-GLTVVLIES 650 (1493)
Q Consensus 595 ----~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~-G~~i~l~~~ 650 (1493)
..|||||+++++||||+. ++||++..| ..+|+||+||+||+|+. |..+.++..
T Consensus 333 ~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 333 PQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred ccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 689999999999999986 899998877 68999999999999986 444666644
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=352.51 Aligned_cols=407 Identities=21% Similarity=0.286 Sum_probs=256.1
Q ss_pred CCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcch
Q psy16310 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250 (1493)
Q Consensus 171 ~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1493)
.-.|+.||......++. +|++++.|||-|||+++++.+.+++..
T Consensus 13 ~ie~R~YQ~~i~a~al~--~NtLvvlPTGLGKT~IA~~V~~~~l~~---------------------------------- 56 (542)
T COG1111 13 TIEPRLYQLNIAAKALF--KNTLVVLPTGLGKTFIAAMVIANRLRW---------------------------------- 56 (542)
T ss_pred cccHHHHHHHHHHHHhh--cCeEEEecCCccHHHHHHHHHHHHHHh----------------------------------
Confidence 34689999999887774 499999999999999999998877732
Q ss_pred hhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcc
Q psy16310 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330 (1493)
Q Consensus 251 ~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~ 330 (1493)
..+ ++|||+||+.|+.|+++.|.+......-.++.++|..........+..+ +|+|+||+.+.+-|..+.++
T Consensus 57 ------~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~~-kVfvaTPQvveNDl~~Grid 128 (542)
T COG1111 57 ------FGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAKK-KVFVATPQVVENDLKAGRID 128 (542)
T ss_pred ------cCC-eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhhC-CEEEeccHHHHhHHhcCccC
Confidence 334 8999999999999999999999877777889999998888776666554 99999999999999988887
Q ss_pred ccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeecc
Q psy16310 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410 (1493)
Q Consensus 331 ~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl 410 (1493)
+. ++.+|||||||+..+..-+-.+..-+-+. ...+.++++|||+
T Consensus 129 ~~---dv~~lifDEAHRAvGnyAYv~Va~~y~~~---------------------------------~k~~~ilgLTASP 172 (542)
T COG1111 129 LD---DVSLLIFDEAHRAVGNYAYVFVAKEYLRS---------------------------------AKNPLILGLTASP 172 (542)
T ss_pred hH---HceEEEechhhhccCcchHHHHHHHHHHh---------------------------------ccCceEEEEecCC
Confidence 66 78999999999997665554444433222 3345678888887
Q ss_pred chhhhhhhhhhc--cccccccccCCCchh--------------------hhHHhhhhccCCcccchhhhhccccccc---
Q psy16310 411 THSLKNSLNLKK--GQSKSKKVSKGDPSI--------------------KRLQDLLNIKSPKIVDLTEKIGITKTLT--- 465 (1493)
Q Consensus 411 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 465 (1493)
..+......+.. +..........++.+ ..+.+.+...-..........++.....
T Consensus 173 Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~ 252 (542)
T COG1111 173 GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVS 252 (542)
T ss_pred CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCccc
Confidence 665443322211 111111111112111 1111111000000000000000000000
Q ss_pred ---------hhhhhhccCCcchh--------------hHHHHhcCCCcchhhHHHhhhhccCCc----cccccccccccc
Q psy16310 466 ---------ESKILCKHDEKDSY--------------LYYFILQHPGRTLCEEIQDLLNIKSPK----IVDLTEKIGITK 518 (1493)
Q Consensus 466 ---------~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 518 (1493)
.............+ ...++....-..+..-+..+....... ...+........
T Consensus 253 ~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~ 332 (542)
T COG1111 253 KKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKR 332 (542)
T ss_pred HhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHH
Confidence 00000000000000 000000000000000000000000000 000000000000
Q ss_pred ccc---ccccccccCchhhHHHHHHhhC-----CCcEEEEecchhhHHHHHHHHHhcCCCcc-cc--------ccCCCHH
Q psy16310 519 TLT---ESKILCKHDEKDSYLYYFILQH-----PGRTLVFCNSISSVKRLTQLLTMLKCSPL-PL--------HASMNQR 581 (1493)
Q Consensus 519 ~~~---~~~~~~~~~~k~~~l~~~l~~~-----~~~~IIF~~s~~~a~~L~~~L~~~~~~~~-~l--------hg~~~~~ 581 (1493)
.+. ........+.|...+..++.+. ..++|||++.|.+|+.+..+|...++.+. .+ ..||+|.
T Consensus 333 al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQk 412 (542)
T COG1111 333 ALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQK 412 (542)
T ss_pred HHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHH
Confidence 000 0112223456777776666443 46999999999999999999999887774 33 3479999
Q ss_pred HHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhh
Q psy16310 582 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTK 658 (1493)
Q Consensus 582 ~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~ 658 (1493)
+|..+++.|+.|.++|||||+++++|||||.|++||+|++.+|.+.+|||.|||||. +.|.+++|++.+..+....
T Consensus 413 eQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtrdeayy 488 (542)
T COG1111 413 EQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTRDEAYY 488 (542)
T ss_pred HHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996 7999999999985544333
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=389.24 Aligned_cols=351 Identities=23% Similarity=0.300 Sum_probs=272.8
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHH
Q psy16310 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 236 (1493)
Q Consensus 157 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (1493)
-|++.+.+.+... |..|||.|.++|| .+.+|+|++++||||||||+++.||+++.+.+..
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~-~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~------------------ 66 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIP-EIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG------------------ 66 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHH-HHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc------------------
Confidence 3789999999888 9999999999999 5669999999999999999999999999997632
Q ss_pred HHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeC
Q psy16310 237 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316 (1493)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~T 316 (1493)
......+..||+++|.|+|..++.+.+...+..+|+.+...+|+++.........+.|||+|+|
T Consensus 67 ----------------~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTT 130 (814)
T COG1201 67 ----------------KGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITT 130 (814)
T ss_pred ----------------CCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeC
Confidence 0122456889999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccC
Q psy16310 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTE 396 (1493)
Q Consensus 317 P~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1493)
|+.|.-+|.... ....|.+++++||||.|.+.+...+.++.--+.++....
T Consensus 131 PEsL~lll~~~~-~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~---------------------------- 181 (814)
T COG1201 131 PESLAILLNSPK-FRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELA---------------------------- 181 (814)
T ss_pred hhHHHHHhcCHH-HHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhC----------------------------
Confidence 999977776543 233577999999999999999999999998888885431
Q ss_pred CCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccC--CcccchhhhhccccccchhhhhhccC
Q psy16310 397 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHD 474 (1493)
Q Consensus 397 ~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1493)
+ ..|.+++|||+.+.. .+..|+.-.. ..++.........- .+
T Consensus 182 -~-~~qRIGLSATV~~~~------------------------~varfL~g~~~~~~Iv~~~~~k~~~i-----~v----- 225 (814)
T COG1201 182 -G-DFQRIGLSATVGPPE------------------------EVAKFLVGFGDPCEIVDVSAAKKLEI-----KV----- 225 (814)
T ss_pred -c-ccEEEeehhccCCHH------------------------HHHHHhcCCCCceEEEEcccCCcceE-----EE-----
Confidence 2 579999999997432 1122221111 01111100000000 00
Q ss_pred CcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecch
Q psy16310 475 EKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSI 554 (1493)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~ 554 (1493)
..+... ... .-.........+.+++.++. .+|||+|||
T Consensus 226 -----------~~p~~~----------------------------~~~--~~~~~~~~~~~i~~~v~~~~-ttLIF~NTR 263 (814)
T COG1201 226 -----------ISPVED----------------------------LIY--DEELWAALYERIAELVKKHR-TTLIFTNTR 263 (814)
T ss_pred -----------EecCCc----------------------------ccc--ccchhHHHHHHHHHHHhhcC-cEEEEEeCh
Confidence 000000 000 00011123334445555555 899999999
Q ss_pred hhHHHHHHHHHhcC-CCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHh
Q psy16310 555 SSVKRLTQLLTMLK-CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 633 (1493)
Q Consensus 555 ~~a~~L~~~L~~~~-~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~G 633 (1493)
..++.++..|...+ ..+..|||.++..+|..+.++|++|+.+++|||+.++-|||+.+|++||+|..|.++..++||+|
T Consensus 264 ~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiG 343 (814)
T COG1201 264 SGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIG 343 (814)
T ss_pred HHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhcc
Confidence 99999999999886 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-cCCCCCeEEEEecC
Q psy16310 634 RTA-RANNEGLTVVLIES 650 (1493)
Q Consensus 634 Rag-R~g~~G~~i~l~~~ 650 (1493)
|+| |.|....++++...
T Consensus 344 RsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 344 RAGHRLGEVSKGIIIAED 361 (814)
T ss_pred ccccccCCcccEEEEecC
Confidence 999 45665777777654
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=371.84 Aligned_cols=333 Identities=21% Similarity=0.327 Sum_probs=255.4
Q ss_pred HHHH-CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHH
Q psy16310 782 ALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELE 860 (1493)
Q Consensus 782 ~l~~-~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (1493)
.|++ +||..++|-|.++|. .+..|+|+++..|||+||++||.+|++-.
T Consensus 8 ~L~~~fGy~~FR~gQ~evI~-~~l~g~d~lvvmPTGgGKSlCyQiPAll~------------------------------ 56 (590)
T COG0514 8 VLKQVFGYASFRPGQQEIID-ALLSGKDTLVVMPTGGGKSLCYQIPALLL------------------------------ 56 (590)
T ss_pred HHHHHhCccccCCCHHHHHH-HHHcCCcEEEEccCCCCcchHhhhHHHhc------------------------------
Confidence 3443 599999999999997 55578999999999999999999998731
Q ss_pred HhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEECcHH
Q psy16310 861 EESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL----NKCPHILVATPGR 936 (1493)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~r 936 (1493)
..-+|||+|..+|...+.+.++..+ +.+.++.+..+..+....+ ....+++.-+|++
T Consensus 57 ---------------~G~TLVVSPLiSLM~DQV~~l~~~G----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPEr 117 (590)
T COG0514 57 ---------------EGLTLVVSPLISLMKDQVDQLEAAG----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPER 117 (590)
T ss_pred ---------------CCCEEEECchHHHHHHHHHHHHHcC----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchh
Confidence 1259999999999999999998875 8999999887766654433 2347999999999
Q ss_pred HHHHHHhCcCccccccceeEEEecccchhccCC--ChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCc
Q psy16310 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014 (1493)
Q Consensus 937 l~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~--~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~ 1014 (1493)
|..--....+ .-..+.++||||||++++|| |.+++..+-...... ++.+++.+|||.++.+...+.
T Consensus 118 l~~~~f~~~L---~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~---~~~p~~AlTATA~~~v~~DI~------ 185 (590)
T COG0514 118 LMSPRFLELL---KRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGL---PNPPVLALTATATPRVRDDIR------ 185 (590)
T ss_pred hcChHHHHHH---HhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhC---CCCCEEEEeCCCChHHHHHHH------
Confidence 8642211111 12357899999999999998 778777766554322 367899999999988766553
Q ss_pred CcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEe-cccchhhHHHHHHHhCCCcEEEEecchhhHHHH
Q psy16310 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC-KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRL 1093 (1493)
Q Consensus 1015 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l 1093 (1493)
..+.+..+..+...-. .+ ++....... ....+...+........+..||||.|++.|+.+
T Consensus 186 ----------------~~L~l~~~~~~~~sfd--Rp-Ni~~~v~~~~~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~i 246 (590)
T COG0514 186 ----------------EQLGLQDANIFRGSFD--RP-NLALKVVEKGEPSDQLAFLATVLPQLSKSGIIYCLTRKKVEEL 246 (590)
T ss_pred ----------------HHhcCCCcceEEecCC--Cc-hhhhhhhhcccHHHHHHHHHhhccccCCCeEEEEeeHHhHHHH
Confidence 3334444322211100 00 000000000 111222211111123466799999999999999
Q ss_pred HHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCC
Q psy16310 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173 (1493)
Q Consensus 1094 ~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~ 1173 (1493)
++.|...|+.+..|||+|+..+|..+.++|..+++.|+|||.++++|||.|||++|||||+|.|+++|+|.+|||||.|.
T Consensus 247 a~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~ 326 (590)
T COG0514 247 AEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGL 326 (590)
T ss_pred HHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCHHHHHHHHHh
Q psy16310 1174 EGLTLVLIESDEIPLYIKMFNS 1195 (1493)
Q Consensus 1174 ~G~~i~l~~~~e~~~~~~~~~~ 1195 (1493)
...|++|+.+.|....+.+...
T Consensus 327 ~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 327 PAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred cceEEEeeccccHHHHHHHHHh
Confidence 9999999999998877777655
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=399.21 Aligned_cols=342 Identities=18% Similarity=0.237 Sum_probs=246.6
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccc
Q psy16310 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 231 (1493)
.|++++|++.+++.+...+|. |+++|.++++ .+..++|++++||||||||++|.+++++.+..
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~-~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------------- 64 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIE-QLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------------- 64 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHH-HHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------------
Confidence 467889999999999999997 9999999998 56788999999999999999999999877632
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCC
Q psy16310 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311 (1493)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~ 311 (1493)
+.++||++||++||.|+++.+..+. ..++++...+|+....... .+.++
T Consensus 65 ---------------------------~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~---~~~~d 113 (674)
T PRK01172 65 ---------------------------GLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPDF---IKRYD 113 (674)
T ss_pred ---------------------------CCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChhh---hccCC
Confidence 2469999999999999999998764 4688999999987654322 24579
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1493)
|+|+||+++..++.+.. ..+.++++||+||||++.+.+++..++.++.++...
T Consensus 114 Iiv~Tpek~~~l~~~~~---~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~------------------------ 166 (674)
T PRK01172 114 VVILTSEKADSLIHHDP---YIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYV------------------------ 166 (674)
T ss_pred EEEECHHHHHHHHhCCh---hHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhc------------------------
Confidence 99999999988876543 236689999999999998888988898888765322
Q ss_pred ccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhh
Q psy16310 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 471 (1493)
Q Consensus 392 ~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1493)
.+..|++++|||+++. .. +.+|+.... + ..... +..+... +..
T Consensus 167 ------~~~~riI~lSATl~n~-~~-----------------------la~wl~~~~--~---~~~~r-~vpl~~~-i~~ 209 (674)
T PRK01172 167 ------NPDARILALSATVSNA-NE-----------------------LAQWLNASL--I---KSNFR-PVPLKLG-ILY 209 (674)
T ss_pred ------CcCCcEEEEeCccCCH-HH-----------------------HHHHhCCCc--c---CCCCC-CCCeEEE-EEe
Confidence 3357999999999752 11 112221100 0 00000 0000000 000
Q ss_pred ccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEe
Q psy16310 472 KHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFC 551 (1493)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~ 551 (1493)
. ...+ .+ .. .........+.......++++||||
T Consensus 210 ~---~~~~----------------------------~~-------------~~--~~~~~~~~~~i~~~~~~~~~vLVF~ 243 (674)
T PRK01172 210 R---KRLI----------------------------LD-------------GY--ERSQVDINSLIKETVNDGGQVLVFV 243 (674)
T ss_pred c---Ceee----------------------------ec-------------cc--ccccccHHHHHHHHHhCCCcEEEEe
Confidence 0 0000 00 00 0000000111111123467999999
Q ss_pred cchhhHHHHHHHHHhc-------------------------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhc
Q psy16310 552 NSISSVKRLTQLLTML-------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606 (1493)
Q Consensus 552 ~s~~~a~~L~~~L~~~-------------------------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~r 606 (1493)
+++..|+.++..|... ..+++.|||+|++.+|..+++.|++|.++|||||+++++
T Consensus 244 ~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~ 323 (674)
T PRK01172 244 SSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAA 323 (674)
T ss_pred ccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhc
Confidence 9999999999888543 135778999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEecC---------CCChHHHHHHHhccccCCC--CCeEEEEecCCc
Q psy16310 607 GLDIPGIEHVIHYHV---------PRTSEIYIHRSGRTARANN--EGLTVVLIESDE 652 (1493)
Q Consensus 607 GlDip~v~~VI~yd~---------P~s~~~yiQR~GRagR~g~--~G~~i~l~~~~e 652 (1493)
|+|+|+..+|| +|. |.++.+|.||+|||||.|. .|.+++++...+
T Consensus 324 Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 324 GVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred cCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 99999875554 433 5688999999999999985 577888876543
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=402.80 Aligned_cols=329 Identities=20% Similarity=0.244 Sum_probs=222.2
Q ss_pred EEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHH
Q psy16310 811 GAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAI 890 (1493)
Q Consensus 811 v~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~ 890 (1493)
|+||||||||++|.+|++..++....... .......+.++|||+||++|+.
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~-----------------------------~~~~~~~~~raLYISPLKALa~ 51 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDT-----------------------------REAHKRKTSRILYISPIKALGT 51 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccc-----------------------------cccccCCCCEEEEEeChHHHHH
Confidence 57999999999999999999865311000 0001124578999999999999
Q ss_pred HHHHHHHHhh------------CCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEE
Q psy16310 891 QVQNHILDAG------------KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 958 (1493)
Q Consensus 891 Q~~~~~~~~~------------~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lV 958 (1493)
|+++.++... ...++++...+|+++...+...+.+.+||||+||++|..++.+.. ...++++++||
T Consensus 52 Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~--r~~L~~Vr~VI 129 (1490)
T PRK09751 52 DVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRA--RETLRGVETVI 129 (1490)
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhh--hhhhccCCEEE
Confidence 9999987521 125789999999999998888888889999999999988876432 23578999999
Q ss_pred ecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCC
Q psy16310 959 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSP 1038 (1493)
Q Consensus 959 lDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 1038 (1493)
|||+|.|++..++..+...+.++... .+.+.|+|+||||+++. ........+ .....+... +....+ .+.
T Consensus 130 VDE~H~L~g~kRG~~Lel~LeRL~~l-~~~~~QrIgLSATI~n~-eevA~~L~g-~~pv~Iv~~-~~~r~~----~l~-- 199 (1490)
T PRK09751 130 IDEVHAVAGSKRGAHLALSLERLDAL-LHTSAQRIGLSATVRSA-SDVAAFLGG-DRPVTVVNP-PAMRHP----QIR-- 199 (1490)
T ss_pred EecHHHhcccccccHHHHHHHHHHHh-CCCCCeEEEEEeeCCCH-HHHHHHhcC-CCCEEEECC-CCCccc----ceE--
Confidence 99999999876666666666666432 23568999999999863 222211111 100011000 000000 000
Q ss_pred cEEeccccccccccceeeE--EEec-ccc-h---hhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcC----------
Q psy16310 1039 KIVDLTEKIGITKTLTESK--ILCK-HDE-K---DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK---------- 1101 (1493)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~--~~~~-~~~-k---~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~---------- 1101 (1493)
..+................ .... ... . ...++..+ ....++||||||+..|+.++..|+...
T Consensus 200 v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i-~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~ 278 (1490)
T PRK09751 200 IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEV-LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSI 278 (1490)
T ss_pred EEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHH-hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccc
Confidence 0000000000000000000 0000 000 0 01111111 235789999999999999999997642
Q ss_pred -----------------------CCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCCh
Q psy16310 1102 -----------------------CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 1158 (1493)
Q Consensus 1102 -----------------------~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~ 1158 (1493)
..+..|||+|++.+|..+++.|++|++++||||+++++|||+++|++||||+.|.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sV 358 (1490)
T PRK09751 279 AVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSV 358 (1490)
T ss_pred cchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCH
Confidence 115679999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccCCC-CCCCeEEEEe
Q psy16310 1159 EIYIHRSGRTARA-NNEGLTLVLI 1181 (1493)
Q Consensus 1159 ~~yiqr~GR~gR~-g~~G~~i~l~ 1181 (1493)
.+|+||+||+||. |..+.++++.
T Consensus 359 as~LQRiGRAGR~~gg~s~gli~p 382 (1490)
T PRK09751 359 ASGLQRIGRAGHQVGGVSKGLFFP 382 (1490)
T ss_pred HHHHHHhCCCCCCCCCccEEEEEe
Confidence 9999999999997 3345555443
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=394.43 Aligned_cols=322 Identities=18% Similarity=0.177 Sum_probs=232.5
Q ss_pred CCCHHHHHHHHH-CCCCCChHHHHhhhhhhhcc-----CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 157 NIPETIIRALYQ-KGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 157 ~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~-----~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
..+..+.+.+.+ .+| .||++|.++|+.++.+ ++|+++|||||||||.+|++|++..+.
T Consensus 435 ~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~--------------- 498 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL--------------- 498 (926)
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH---------------
Confidence 445566666655 588 5999999999965542 379999999999999999999987663
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHH---Hhc
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---ILN 307 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~---~l~ 307 (1493)
.+.+++||+||++||.|+++.|..+....++++..++|+.+...... .+.
T Consensus 499 ---------------------------~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~ 551 (926)
T TIGR00580 499 ---------------------------DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELA 551 (926)
T ss_pred ---------------------------hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHH
Confidence 23579999999999999999999988888899999999877544332 333
Q ss_pred -CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 308 -KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 308 -~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
+.++|||+||..+ . ... .+.++++|||||+|++. ......+..+
T Consensus 552 ~g~~dIVIGTp~ll----~-~~v---~f~~L~llVIDEahrfg-----v~~~~~L~~~---------------------- 596 (926)
T TIGR00580 552 SGKIDILIGTHKLL----Q-KDV---KFKDLGLLIIDEEQRFG-----VKQKEKLKEL---------------------- 596 (926)
T ss_pred cCCceEEEchHHHh----h-CCC---CcccCCEEEeecccccc-----hhHHHHHHhc----------------------
Confidence 3589999999533 2 222 35689999999999852 1222333222
Q ss_pred hhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccch
Q psy16310 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 466 (1493)
Q Consensus 387 ~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1493)
....|+++||||+.+........ .......+........
T Consensus 597 -----------~~~~~vL~~SATpiprtl~~~l~------------------------g~~d~s~I~~~p~~R~------ 635 (926)
T TIGR00580 597 -----------RTSVDVLTLSATPIPRTLHMSMS------------------------GIRDLSIIATPPEDRL------ 635 (926)
T ss_pred -----------CCCCCEEEEecCCCHHHHHHHHh------------------------cCCCcEEEecCCCCcc------
Confidence 23479999999976543221100 0000000000000000
Q ss_pred hhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCch--hhHHHHHHhhCC
Q psy16310 467 SKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK--DSYLYYFILQHP 544 (1493)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k--~~~l~~~l~~~~ 544 (1493)
.+... ....+.. ...+...+ ..+
T Consensus 636 ----------------------------------------------------~V~t~--v~~~~~~~i~~~i~~el-~~g 660 (926)
T TIGR00580 636 ----------------------------------------------------PVRTF--VMEYDPELVREAIRREL-LRG 660 (926)
T ss_pred ----------------------------------------------------ceEEE--EEecCHHHHHHHHHHHH-HcC
Confidence 00000 0000000 00111111 246
Q ss_pred CcEEEEecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCC
Q psy16310 545 GRTLVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP 622 (1493)
Q Consensus 545 ~~~IIF~~s~~~a~~L~~~L~~~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P 622 (1493)
++++|||+++.+++.++..|... ++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||++++|
T Consensus 661 ~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~ 740 (926)
T TIGR00580 661 GQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERAD 740 (926)
T ss_pred CeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCC
Confidence 79999999999999999999875 6789999999999999999999999999999999999999999999999999997
Q ss_pred C-ChHHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 623 R-TSEIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 623 ~-s~~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
. +...|+||+||+||.|+.|+|++++.+.+
T Consensus 741 ~~gls~l~Qr~GRvGR~g~~g~aill~~~~~ 771 (926)
T TIGR00580 741 KFGLAQLYQLRGRVGRSKKKAYAYLLYPHQK 771 (926)
T ss_pred CCCHHHHHHHhcCCCCCCCCeEEEEEECCcc
Confidence 5 67899999999999999999999997654
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=382.73 Aligned_cols=415 Identities=19% Similarity=0.169 Sum_probs=330.3
Q ss_pred cCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhcc-----CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 772 ~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-----~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
.++.+......+.+..-...||-|..||..+... -.|-++||..|.|||.+++.+++..++
T Consensus 576 af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~-------------- 641 (1139)
T COG1197 576 AFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM-------------- 641 (1139)
T ss_pred CCCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc--------------
Confidence 3567778888887766567799999999866532 258999999999999999999997764
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc--
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-- 924 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~-- 924 (1493)
.|.+|.|||||.-||+|+++.|+...++++++|..++.-.+..++...+.
T Consensus 642 ----------------------------~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~l 693 (1139)
T COG1197 642 ----------------------------DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGL 693 (1139)
T ss_pred ----------------------------CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHH
Confidence 44689999999999999999999999999999999999888887766553
Q ss_pred --CCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 925 --KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 925 --~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
...||||||+--|..- ..|+++++|||||-|++ +-.-..-++.+. .+..++-+|||+-+.
T Consensus 694 a~G~vDIvIGTHrLL~kd--------v~FkdLGLlIIDEEqRF-----GVk~KEkLK~Lr-----~~VDvLTLSATPIPR 755 (1139)
T COG1197 694 AEGKVDIVIGTHRLLSKD--------VKFKDLGLLIIDEEQRF-----GVKHKEKLKELR-----ANVDVLTLSATPIPR 755 (1139)
T ss_pred hcCCccEEEechHhhCCC--------cEEecCCeEEEechhhc-----CccHHHHHHHHh-----ccCcEEEeeCCCCcc
Confidence 4689999998655221 24778999999999994 334445555553 567899999997543
Q ss_pred hHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEE
Q psy16310 1003 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 1082 (1493)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IV 1082 (1493)
..... ..++++ +++.......+...+.++...++.-+...+..-..++|++..
T Consensus 756 TL~Ms------------------------m~GiRd---lSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfY 808 (1139)
T COG1197 756 TLNMS------------------------LSGIRD---LSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFY 808 (1139)
T ss_pred hHHHH------------------------Hhcchh---hhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEE
Confidence 22211 112222 222223333333444555545544444444445567999999
Q ss_pred EecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCC-Chh
Q psy16310 1083 FCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR-TSE 1159 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~--~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~-s~~ 1159 (1493)
.+|.+++.+.++..|+.+ ..++.+.||.|+..+-+.+|..|.+|+.+|||||.+++.|||||++|++|..+.-. ..+
T Consensus 809 v~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLs 888 (1139)
T COG1197 809 VHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLA 888 (1139)
T ss_pred EecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHH
Confidence 999999999999999987 45788899999999999999999999999999999999999999999999877654 678
Q ss_pred HHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCch
Q psy16310 1160 IYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDN 1239 (1493)
Q Consensus 1160 ~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 1239 (1493)
+..|..||+||..+.|+||+++.+.. .+.....+|+.+..++..++++++.++.+.
T Consensus 889 QLyQLRGRVGRS~~~AYAYfl~p~~k------------------------~lT~~A~kRL~aI~~~~~LGaGf~lA~~DL 944 (1139)
T COG1197 889 QLYQLRGRVGRSNKQAYAYFLYPPQK------------------------ALTEDAEKRLEAIASFTELGAGFKLAMHDL 944 (1139)
T ss_pred HHHHhccccCCccceEEEEEeecCcc------------------------ccCHHHHHHHHHHHhhhhcCchHHHHhcch
Confidence 89999999999999999999985543 333567789999999999999999999999
Q ss_pred HHHHHhhhhhhcccccchhccccCChhHHHHHHHHHHhhcCC--------CCCchhHHHHHHHHHhhhcc
Q psy16310 1240 WLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL--------PDFPIDESVLSLIKKRIDLA 1301 (1493)
Q Consensus 1240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 1301 (1493)
.+|++|+..+.+|+| +|.+.||++|.+|+++++.++.- ....|+..+.++|+..+-.+
T Consensus 945 eIRGaGNlLG~eQSG----~I~~VGf~LY~~mLeeAI~~lk~~~e~~~~~~~~eIdL~~~a~iPe~YI~d 1010 (1139)
T COG1197 945 EIRGAGNLLGEEQSG----HIESVGFDLYMEMLEEAIAALKGSLEVLEEEKEVEIDLPVPAFIPEDYIPD 1010 (1139)
T ss_pred hccccccccCccccC----chheecHHHHHHHHHHHHHHHhcCCcccccCCCeeEecCCCCcCChhhccC
Confidence 999999999999999 99999999999999998875542 25567777889998876443
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=402.16 Aligned_cols=288 Identities=21% Similarity=0.266 Sum_probs=220.1
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
.|+ .|||+|..++|. +..|+|++++||||||||+ |++|++..+.
T Consensus 77 ~G~-~pt~iQ~~~i~~-il~g~dv~i~ApTGsGKT~-f~l~~~~~l~--------------------------------- 120 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKR-LLLGESFAIIAPTGVGKTT-FGLVMSLYLA--------------------------------- 120 (1176)
T ss_pred cCC-CCcHHHHHHHHH-HHCCCcEEEEcCCCCCHHH-HHHHHHHHHH---------------------------------
Confidence 477 899999999995 4578999999999999996 6666554331
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCH-----HHHHHHhc-CCCcEEEECcHHHHH
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMST-----EKQLRILN-KCPHILVATPGRLWE 939 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~-----~~~~~~l~-~~~~IlV~TP~rl~~ 939 (1493)
..+.++|||+|||+||.|+++.++.++...++.+..++|+... ..+...+. ..++|+|+||++|.+
T Consensus 121 --------~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~ 192 (1176)
T PRK09401 121 --------KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSK 192 (1176)
T ss_pred --------hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHH
Confidence 1256899999999999999999999998888888888877542 22333444 458999999999998
Q ss_pred HHHhCcCccccccceeEEEecccchhcc-----------CCCh-hHHHHHHHHhcccC-------------------CCC
Q psy16310 940 FIQLGHFHLTELYKINYLVIDETDRMIE-----------SGHF-PELKNILDRVTMTE-------------------TSQ 988 (1493)
Q Consensus 940 ~l~~~~~~~~~l~~l~~lVlDEah~ll~-----------~~~~-~~l~~il~~l~~~~-------------------~~~ 988 (1493)
++. .+ ...++++||+||||+|++ .||. .++..++..++... .+.
T Consensus 193 ~~~--~l---~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~ 267 (1176)
T PRK09401 193 NFD--EL---PKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDK 267 (1176)
T ss_pred HHH--hc---cccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccC
Confidence 876 11 234589999999999996 5774 57777777764300 112
Q ss_pred CceEEEEecccccc-hHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhh
Q psy16310 989 PRQTFVFSATLTHS-LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDS 1067 (1493)
Q Consensus 989 ~~q~ll~SATl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 1067 (1493)
.+|+++||||+++. +...+. .....+.+........++.+.++.+. ++..
T Consensus 268 ~~q~ilfSAT~~~~~~~~~l~---------------------------~~ll~~~v~~~~~~~rnI~~~yi~~~--~k~~ 318 (1176)
T PRK09401 268 KGVLVVSSATGRPRGNRVKLF---------------------------RELLGFEVGSPVFYLRNIVDSYIVDE--DSVE 318 (1176)
T ss_pred CceEEEEeCCCCccchHHHHh---------------------------hccceEEecCcccccCCceEEEEEcc--cHHH
Confidence 68999999999853 322110 00011222222233455666666554 5666
Q ss_pred HHHHHHHhCCCcEEEEecchhh---HHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEe----ehhhhcc
Q psy16310 1068 YLYYFILQHPGRTLVFCNSISS---VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA----TDVAARG 1140 (1493)
Q Consensus 1068 ~l~~~l~~~~~~~IVF~~s~~~---~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVa----Tdv~~~G 1140 (1493)
.+..++...+.++||||+++.. |+.++..|...|+++..+||+| .+.+++|++|+++|||| ||+++||
T Consensus 319 ~L~~ll~~l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRG 393 (1176)
T PRK09401 319 KLVELVKRLGDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRG 393 (1176)
T ss_pred HHHHHHHhcCCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeec
Confidence 7777777777899999999888 9999999999999999999999 23459999999999999 6999999
Q ss_pred ccCCC-ccEEEEecCCC
Q psy16310 1141 LDIPG-IEHVIHYHVPR 1156 (1493)
Q Consensus 1141 iDip~-v~~VI~~d~p~ 1156 (1493)
||+|+ |++|||||+|.
T Consensus 394 IDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 394 IDLPERIRYAIFYGVPK 410 (1176)
T ss_pred CCCCcceeEEEEeCCCC
Confidence 99999 89999999997
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=363.51 Aligned_cols=365 Identities=20% Similarity=0.300 Sum_probs=268.8
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
.||..+++-|.++|. .+.+++|+++.+|||+||+++|.+|++-.
T Consensus 13 fGy~~FR~gQ~evI~-~~l~g~d~lvvmPTGgGKSlCyQiPAll~----------------------------------- 56 (590)
T COG0514 13 FGYASFRPGQQEIID-ALLSGKDTLVVMPTGGGKSLCYQIPALLL----------------------------------- 56 (590)
T ss_pred hCccccCCCHHHHHH-HHHcCCcEEEEccCCCCcchHhhhHHHhc-----------------------------------
Confidence 599999999999997 66688999999999999999999998721
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHh----cCCCCEEEeCcHHHHHHH
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL----NKCPHILVATPGRLWEFI 324 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l----~~~~~IiV~TP~~L~~~l 324 (1493)
..-+|||+|..+|+..+.+.++.. |+.+..+.+..+..+....+ ....+++.-+|++|..--
T Consensus 57 ----------~G~TLVVSPLiSLM~DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~ 122 (590)
T COG0514 57 ----------EGLTLVVSPLISLMKDQVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPR 122 (590)
T ss_pred ----------CCCEEEECchHHHHHHHHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChH
Confidence 124999999999999999999886 68888888887766654333 234789999999986432
Q ss_pred HcCCccccccccccEEEEecCchhhhcC--ChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCce
Q psy16310 325 QLGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQ 402 (1493)
Q Consensus 325 ~~~~~~~~~l~~i~~lViDEAh~ll~~~--~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 402 (1493)
....+. -..+.++||||||++.+|| |.+.+..+-...... +...
T Consensus 123 f~~~L~---~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~-------------------------------~~~p 168 (590)
T COG0514 123 FLELLK---RLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGL-------------------------------PNPP 168 (590)
T ss_pred HHHHHH---hCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhC-------------------------------CCCC
Confidence 111111 2268999999999999997 888888776654322 2467
Q ss_pred EEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHH
Q psy16310 403 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 482 (1493)
Q Consensus 403 ~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1493)
++.++||.++.+..-+.. .+....+... .....+.. +++
T Consensus 169 ~~AlTATA~~~v~~DI~~----------------------~L~l~~~~~~------------------~~sfdRpN-i~~ 207 (590)
T COG0514 169 VLALTATATPRVRDDIRE----------------------QLGLQDANIF------------------RGSFDRPN-LAL 207 (590)
T ss_pred EEEEeCCCChHHHHHHHH----------------------HhcCCCcceE------------------EecCCCch-hhh
Confidence 999999999876543321 1111111000 00000000 111
Q ss_pred HHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHH
Q psy16310 483 FILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQ 562 (1493)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~ 562 (1493)
.+.... ....+..++...+....+++||||.|++.++.+++
T Consensus 208 ~v~~~~---------------------------------------~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~ 248 (590)
T COG0514 208 KVVEKG---------------------------------------EPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAE 248 (590)
T ss_pred hhhhcc---------------------------------------cHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHH
Confidence 110000 00011111111112335678999999999999999
Q ss_pred HHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCC
Q psy16310 563 LLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642 (1493)
Q Consensus 563 ~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G 642 (1493)
.|...|+.+..|||+|+..+|..+.++|..+++.|+|||..+++|||.|+|++|||||+|.|+++|+|-+|||||.|.+.
T Consensus 249 ~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a 328 (590)
T COG0514 249 WLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPA 328 (590)
T ss_pred HHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCcchhhhhhhhhhccchHHHHHHHhhhcccccchhhhhhhhhhhhcc
Q psy16310 643 LTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRK 697 (1493)
Q Consensus 643 ~~i~l~~~~e~~~~~~l~~~~~~~~e~~e~~~~~~~~~e~~~~~vss~k~k~kr~ 697 (1493)
.|++|+++.|......+.....+..+...........+...+....|.+...-..
T Consensus 329 ~aill~~~~D~~~~~~~i~~~~~~~~~~~~~~~kl~~~~~~~e~~~crr~~ll~y 383 (590)
T COG0514 329 EAILLYSPEDIRWQRYLIEQSKPDEEQKQIELAKLRQMIAYCETQTCRRLVLLKY 383 (590)
T ss_pred eEEEeeccccHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcccccchHHHHHHh
Confidence 9999999999998888877766655544444444444555555555555554433
|
|
| >KOG0349|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=339.95 Aligned_cols=319 Identities=26% Similarity=0.352 Sum_probs=226.9
Q ss_pred CCCeEEEEEcccHHHHHHHHHHHHHhhCC---CCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCcccc
Q psy16310 874 RNKLYALILAPTRELAIQVQNHILDAGKY---TPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 950 (1493)
Q Consensus 874 ~~~~~~lil~PTreLa~Q~~~~~~~~~~~---~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~ 950 (1493)
...+.++|+-|+|||++|.++.++++-.+ ..++..++.||.....|...+..+.+|+|+||||+.+.+..+.. .
T Consensus 284 pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~---~ 360 (725)
T KOG0349|consen 284 PNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLV---T 360 (725)
T ss_pred CCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccce---e
Confidence 55688999999999999999977666544 35677789999999999999999999999999999999987764 4
Q ss_pred ccceeEEEecccchhccCCChhHHHHHHHHhcccC-CCCCceEEEEecccccc-hHhHHhhhccCcCccccc--------
Q psy16310 951 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTE-TSQPRQTFVFSATLTHS-LKNSLNLKKGQSKSKKVS-------- 1020 (1493)
Q Consensus 951 l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~-~~~~~q~ll~SATl~~~-~~~~~~~~~~~~~~~~~~-------- 1020 (1493)
+.+++++|+||||.++..++-+.+..+...++.-. .....|.+++|||+..- +.......+..+.-....
T Consensus 361 lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpet 440 (725)
T KOG0349|consen 361 LTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPET 440 (725)
T ss_pred eeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchh
Confidence 56899999999999999999888888887776422 22567999999998621 111110000000000000
Q ss_pred ----------CCCchhHHHHhHhccCCCcEEe-ccccccccccceeeEEEecccchhhHHHHHHHh-CCCcEEEEecchh
Q psy16310 1021 ----------KGDPSIKRLQDLLNIKSPKIVD-LTEKIGITKTLTESKILCKHDEKDSYLYYFILQ-HPGRTLVFCNSIS 1088 (1493)
Q Consensus 1021 ----------~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~IVF~~s~~ 1088 (1493)
..+.....+.+.+........+ +......+.+..+.... -+..+.+..+.+ ...++||||.|+.
T Consensus 441 vHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~ki----lkgEy~v~ai~~h~mdkaiifcrtk~ 516 (725)
T KOG0349|consen 441 VHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKI----LKGEYGVVAIRRHAMDKAIIFCRTKQ 516 (725)
T ss_pred hccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHH----hcCchhhhhhhhhccCceEEEEeccc
Confidence 0111222222222111100000 00000000000000000 011111222222 2568999999999
Q ss_pred hHHHHHHHHHhcC---CCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHH
Q psy16310 1089 SVKRLTQLLTMLK---CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165 (1493)
Q Consensus 1089 ~~~~l~~~L~~~~---~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~ 1165 (1493)
.|+.|..+|.+.| +.+..+||+..+.+|...++.|+.+..+.||||||++||+||.++-++||.-+|.+...|+|||
T Consensus 517 dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhri 596 (725)
T KOG0349|consen 517 DCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRI 596 (725)
T ss_pred cchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhh
Confidence 9999999998875 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCeEEEEecCCCHHHHHHHHHhcccc
Q psy16310 1166 GRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1166 GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~ 1199 (1493)
||+||+.+-|.+|.++.......|...+++.++.
T Consensus 597 grvgraermglaislvat~~ekvwyh~c~srgr~ 630 (725)
T KOG0349|consen 597 GRVGRAERMGLAISLVATVPEKVWYHWCKSRGRS 630 (725)
T ss_pred hccchhhhcceeEEEeeccchheeehhhhccCCc
Confidence 9999999999999999776656666666666553
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=379.98 Aligned_cols=316 Identities=21% Similarity=0.265 Sum_probs=223.9
Q ss_pred HHHH-HHHHCCCCCChHHHHhhhhhhhcc-----CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHH
Q psy16310 161 TIIR-ALYQKGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 234 (1493)
Q Consensus 161 ~l~~-~l~~~g~~~pt~iQ~~~i~~~l~~-----~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 234 (1493)
.+.+ ....++| .||++|.++++.++.+ ..|++++||||||||++|++|++..+.
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------------------- 308 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------------------- 308 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-------------------
Confidence 4444 4455688 5999999999965533 248999999999999999999987662
Q ss_pred HHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHH---HHHhcC-CC
Q psy16310 235 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ---LRILNK-CP 310 (1493)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~---~~~l~~-~~ 310 (1493)
.+.+++||+||++||.|+++.+..++..+++++..++|+.+.... +..+.. .+
T Consensus 309 -----------------------~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~ 365 (681)
T PRK10917 309 -----------------------AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEA 365 (681)
T ss_pred -----------------------cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCC
Confidence 346799999999999999999999998889999999999886443 333333 58
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+|+|+||+.+.+. . .+.+++++||||+|++... ....+...
T Consensus 366 ~IvVgT~~ll~~~-----v---~~~~l~lvVIDE~Hrfg~~-----qr~~l~~~-------------------------- 406 (681)
T PRK10917 366 DIVIGTHALIQDD-----V---EFHNLGLVIIDEQHRFGVE-----QRLALREK-------------------------- 406 (681)
T ss_pred CEEEchHHHhccc-----c---hhcccceEEEechhhhhHH-----HHHHHHhc--------------------------
Confidence 9999999987432 1 2558899999999986321 11111111
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
....++++||||+.+....+... ++. ....+..
T Consensus 407 -------~~~~~iL~~SATp~prtl~~~~~------------g~~------------~~s~i~~---------------- 439 (681)
T PRK10917 407 -------GENPHVLVMTATPIPRTLAMTAY------------GDL------------DVSVIDE---------------- 439 (681)
T ss_pred -------CCCCCEEEEeCCCCHHHHHHHHc------------CCC------------ceEEEec----------------
Confidence 22368999999976432211100 000 0000000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchh---hHHHHHHhhCCCcE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD---SYLYYFILQHPGRT 547 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~---~~l~~~l~~~~~~~ 547 (1493)
.+.. . ..+.. .......+. ..+...+ ..+.++
T Consensus 440 ----------------~p~~------------r--------------~~i~~--~~~~~~~~~~~~~~i~~~~-~~g~q~ 474 (681)
T PRK10917 440 ----------------LPPG------------R--------------KPITT--VVIPDSRRDEVYERIREEI-AKGRQA 474 (681)
T ss_pred ----------------CCCC------------C--------------CCcEE--EEeCcccHHHHHHHHHHHH-HcCCcE
Confidence 0000 0 00000 000001111 1111222 345799
Q ss_pred EEEecch--------hhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEE
Q psy16310 548 LVFCNSI--------SSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI 617 (1493)
Q Consensus 548 IIF~~s~--------~~a~~L~~~L~~~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI 617 (1493)
+|||+.. ..+..+++.|... ++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||
T Consensus 475 ~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VI 554 (681)
T PRK10917 475 YVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMV 554 (681)
T ss_pred EEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEE
Confidence 9999954 4556677777655 46899999999999999999999999999999999999999999999999
Q ss_pred EecCCC-ChHHHHHHHhccccCCCCCeEEEEecC
Q psy16310 618 HYHVPR-TSEIYIHRSGRTARANNEGLTVVLIES 650 (1493)
Q Consensus 618 ~yd~P~-s~~~yiQR~GRagR~g~~G~~i~l~~~ 650 (1493)
+|++|. +...|.||+||+||.|..|+|+++++.
T Consensus 555 i~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 555 IENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred EeCCCCCCHHHHHHHhhcccCCCCceEEEEEECC
Confidence 999997 477788899999999999999999963
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=392.52 Aligned_cols=319 Identities=19% Similarity=0.201 Sum_probs=228.7
Q ss_pred HHHHHHHHHCCCCCChHHHHhhhhhhhcc-----CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHH
Q psy16310 160 ETIIRALYQKGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 234 (1493)
Q Consensus 160 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-----~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 234 (1493)
.+..+.....+| .||++|.++|+.++.+ .+|+++||+||||||.+|+++++..+.
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------------------- 647 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------------------- 647 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-------------------
Confidence 344555677788 6999999999965543 379999999999999999988875442
Q ss_pred HHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc----CCC
Q psy16310 235 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN----KCP 310 (1493)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~----~~~ 310 (1493)
.+.+++||+||++||.|+++.|.......++++.+++|+.+...+...+. +.+
T Consensus 648 -----------------------~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~ 704 (1147)
T PRK10689 648 -----------------------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKI 704 (1147)
T ss_pred -----------------------cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 34679999999999999999999877777899999999888776655432 468
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+|||+||+.| . ... .+.++++|||||+|++ ++. + ...+..+
T Consensus 705 dIVVgTp~lL----~-~~v---~~~~L~lLVIDEahrf---G~~-~-~e~lk~l-------------------------- 745 (1147)
T PRK10689 705 DILIGTHKLL----Q-SDV---KWKDLGLLIVDEEHRF---GVR-H-KERIKAM-------------------------- 745 (1147)
T ss_pred CEEEECHHHH----h-CCC---CHhhCCEEEEechhhc---chh-H-HHHHHhc--------------------------
Confidence 9999999754 2 222 2458999999999987 221 1 2222222
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
+..+|+++||||+.+....+..... ..+..+........
T Consensus 746 -------~~~~qvLl~SATpiprtl~l~~~gl------------------------~d~~~I~~~p~~r~---------- 784 (1147)
T PRK10689 746 -------RADVDILTLTATPIPRTLNMAMSGM------------------------RDLSIIATPPARRL---------- 784 (1147)
T ss_pred -------CCCCcEEEEcCCCCHHHHHHHHhhC------------------------CCcEEEecCCCCCC----------
Confidence 3457999999998765433221000 00000000000000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccccc-CchhhHHHHHHhhCCCcEEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQHPGRTLV 549 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~II 549 (1493)
. +......... ..+...+..+. .+++++|
T Consensus 785 --------------------------------------------~----v~~~~~~~~~~~~k~~il~el~--r~gqv~v 814 (1147)
T PRK10689 785 --------------------------------------------A----VKTFVREYDSLVVREAILREIL--RGGQVYY 814 (1147)
T ss_pred --------------------------------------------C----ceEEEEecCcHHHHHHHHHHHh--cCCeEEE
Confidence 0 0000000000 00111122221 3578999
Q ss_pred EecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCC-CChH
Q psy16310 550 FCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP-RTSE 626 (1493)
Q Consensus 550 F~~s~~~a~~L~~~L~~~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P-~s~~ 626 (1493)
||+++..++.+++.|... +..+..+||+|++.+|.+++.+|++|+++|||||+++++|||+|+|++||.++.. .+..
T Consensus 815 f~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fgla 894 (1147)
T PRK10689 815 LYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 (1147)
T ss_pred EECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHH
Confidence 999999999999999887 7789999999999999999999999999999999999999999999999955443 2456
Q ss_pred HHHHHHhccccCCCCCeEEEEecCC
Q psy16310 627 IYIHRSGRTARANNEGLTVVLIESD 651 (1493)
Q Consensus 627 ~yiQR~GRagR~g~~G~~i~l~~~~ 651 (1493)
.|+||+|||||.|+.|+|++++...
T Consensus 895 q~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 895 QLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred HHHHHhhccCCCCCceEEEEEeCCC
Confidence 7999999999999999999998654
|
|
| >KOG0354|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=360.50 Aligned_cols=415 Identities=21% Similarity=0.213 Sum_probs=255.8
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
..-.++.||.+....|| ++|+||++|||+|||++++..+++|+-.
T Consensus 59 ~~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw--------------------------------- 103 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEW--------------------------------- 103 (746)
T ss_pred CcccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhc---------------------------------
Confidence 34468999999999888 7999999999999999999999998832
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCc
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~ 329 (1493)
.+..++||++||+.|+.|+...+..++.+ ..+....||+........+....+|+|+||+.|.+.|.++..
T Consensus 104 -------~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~ 174 (746)
T KOG0354|consen 104 -------RPKGKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLH 174 (746)
T ss_pred -------CCcceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccc
Confidence 34478999999999999999777776643 677777788666655556667789999999999999987654
Q ss_pred cccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeec
Q psy16310 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409 (1493)
Q Consensus 330 ~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SAT 409 (1493)
.. |+.+.++||||||+....+.+..+..-+-.+. ....|++++|||
T Consensus 175 ~~--ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k--------------------------------~~~~qILgLTAS 220 (746)
T KOG0354|consen 175 DE--LSDFSLIVFDECHRTSKNHPYNNIMREYLDLK--------------------------------NQGNQILGLTAS 220 (746)
T ss_pred cc--cceEEEEEEcccccccccccHHHHHHHHHHhh--------------------------------hccccEEEEecC
Confidence 43 77899999999999988887776664443332 122399999999
Q ss_pred cchhhhhhhhhh-----------------------ccccccccccCC-----CchhhhHHhhhhcc-CCcccchhh---h
Q psy16310 410 LTHSLKNSLNLK-----------------------KGQSKSKKVSKG-----DPSIKRLQDLLNIK-SPKIVDLTE---K 457 (1493)
Q Consensus 410 l~~~~~~~~~~~-----------------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~---~ 457 (1493)
+........... ........+... ++....+..++... ...+..... .
T Consensus 221 pG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~ 300 (746)
T KOG0354|consen 221 PGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTS 300 (746)
T ss_pred CCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcccccccccc
Confidence 975433221110 000000001000 00000011111000 000000000 0
Q ss_pred hccccccchhhhhhccCCcch--h-----hHH---HHhcCCCcchhhHHHhhhhccCCcccc-----ccccccccc---c
Q psy16310 458 IGITKTLTESKILCKHDEKDS--Y-----LYY---FILQHPGRTLCEEIQDLLNIKSPKIVD-----LTEKIGITK---T 519 (1493)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~--~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~ 519 (1493)
+.......+............ + ..+ ++....-+ ....+............. ..+...+.. .
T Consensus 301 ~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir-~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~ 379 (746)
T KOG0354|consen 301 YEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIR-FVDALDYLEDFYEEVALKKYLKLELEARLIRNFTEN 379 (746)
T ss_pred ccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchh-hHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHH
Confidence 000000000000000000000 0 000 00000000 000111111111000000 000000000 0
Q ss_pred ---ccccc-cccccCchhhHHHHHHhhC-----CCcEEEEecchhhHHHHHHHHHh-c--CCCcccccc--------CCC
Q psy16310 520 ---LTESK-ILCKHDEKDSYLYYFILQH-----PGRTLVFCNSISSVKRLTQLLTM-L--KCSPLPLHA--------SMN 579 (1493)
Q Consensus 520 ---~~~~~-~~~~~~~k~~~l~~~l~~~-----~~~~IIF~~s~~~a~~L~~~L~~-~--~~~~~~lhg--------~~~ 579 (1493)
+.... .......|...+..++..+ ..++||||.+|.+|..|..+|.. . ++....+.| +|+
T Consensus 380 m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmt 459 (746)
T KOG0354|consen 380 MNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMT 459 (746)
T ss_pred HHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccC
Confidence 00000 0112356666666666543 57999999999999999999973 2 334443333 899
Q ss_pred HHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 580 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 580 ~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
+.+|..+++.|+.|+++|||||+|+++||||+.|++||.||..+|++..|||+|| ||+. .|.|++|++..+...++..
T Consensus 460 qk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~~vll~t~~~~~~~E~~ 537 (746)
T KOG0354|consen 460 QKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR-NSKCVLLTTGSEVIEFERN 537 (746)
T ss_pred HHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc-CCeEEEEEcchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 9985 8999999997777776666
Q ss_pred hhhhcc
Q psy16310 660 NLQEEE 665 (1493)
Q Consensus 660 ~~~~~~ 665 (1493)
+...+.
T Consensus 538 ~~~~e~ 543 (746)
T KOG0354|consen 538 NLAKEK 543 (746)
T ss_pred HHhHHH
Confidence 554443
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=375.51 Aligned_cols=319 Identities=24% Similarity=0.326 Sum_probs=225.2
Q ss_pred HHHHHHHHHCCCCCChHHHHhhhhhhhcc-----CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHH
Q psy16310 160 ETIIRALYQKGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 234 (1493)
Q Consensus 160 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-----~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 234 (1493)
..+.+.+..++| .||++|.++|+.++.+ ..+.+++||||||||++|++|++..+.
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------------------- 282 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------------------- 282 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-------------------
Confidence 344566678899 6999999999965533 136899999999999999999987662
Q ss_pred HHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHH---HHHhc-CCC
Q psy16310 235 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ---LRILN-KCP 310 (1493)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~---~~~l~-~~~ 310 (1493)
.+.+++||+||++||.|+++.+.+++..+++++.+++|+...... +..+. +.+
T Consensus 283 -----------------------~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~ 339 (630)
T TIGR00643 283 -----------------------AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQI 339 (630)
T ss_pred -----------------------cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCC
Confidence 245799999999999999999999998889999999999876653 33333 457
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+|+|+||+.+.+. . .+.++++|||||+|++... +...+.....
T Consensus 340 ~IiVgT~~ll~~~-----~---~~~~l~lvVIDEaH~fg~~----qr~~l~~~~~------------------------- 382 (630)
T TIGR00643 340 HLVVGTHALIQEK-----V---EFKRLALVIIDEQHRFGVE----QRKKLREKGQ------------------------- 382 (630)
T ss_pred CEEEecHHHHhcc-----c---cccccceEEEechhhccHH----HHHHHHHhcc-------------------------
Confidence 9999999987532 1 2557899999999986321 1111221110
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
....+++++||||+.+....+.. . ++.. .....
T Consensus 383 ------~~~~~~~l~~SATp~prtl~l~~--~----------~~l~------------~~~i~----------------- 415 (630)
T TIGR00643 383 ------GGFTPHVLVMSATPIPRTLALTV--Y----------GDLD------------TSIID----------------- 415 (630)
T ss_pred ------cCCCCCEEEEeCCCCcHHHHHHh--c----------CCcc------------eeeec-----------------
Confidence 00246899999997543211100 0 0000 00000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHh---hCCCcE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL---QHPGRT 547 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~---~~~~~~ 547 (1493)
..+.. ..+ ... .......+ ..++..+. ..+.++
T Consensus 416 ---------------~~p~~------------r~~--------------i~~--~~~~~~~~-~~~~~~i~~~l~~g~q~ 451 (630)
T TIGR00643 416 ---------------ELPPG------------RKP--------------ITT--VLIKHDEK-DIVYEFIEEEIAKGRQA 451 (630)
T ss_pred ---------------cCCCC------------CCc--------------eEE--EEeCcchH-HHHHHHHHHHHHhCCcE
Confidence 00000 000 000 00000111 12222222 235689
Q ss_pred EEEecch--------hhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEE
Q psy16310 548 LVFCNSI--------SSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI 617 (1493)
Q Consensus 548 IIF~~s~--------~~a~~L~~~L~~~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI 617 (1493)
+|||+.. ..+..+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||
T Consensus 452 ~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VI 531 (630)
T TIGR00643 452 YVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMV 531 (630)
T ss_pred EEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEE
Confidence 9999876 4566777777653 67899999999999999999999999999999999999999999999999
Q ss_pred EecCCC-ChHHHHHHHhccccCCCCCeEEEEec
Q psy16310 618 HYHVPR-TSEIYIHRSGRTARANNEGLTVVLIE 649 (1493)
Q Consensus 618 ~yd~P~-s~~~yiQR~GRagR~g~~G~~i~l~~ 649 (1493)
+|+.|. +...|.||+||+||.|..|+|++++.
T Consensus 532 i~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 532 IEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred EeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 999997 67788899999999999999999993
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=391.74 Aligned_cols=335 Identities=20% Similarity=0.224 Sum_probs=221.9
Q ss_pred EEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHH
Q psy16310 194 GAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAI 273 (1493)
Q Consensus 194 v~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~ 273 (1493)
|+||||||||++|.||++..++........ ......+.++|||+||++|+.
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~-----------------------------~~~~~~~~raLYISPLKALa~ 51 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTR-----------------------------EAHKRKTSRILYISPIKALGT 51 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhccccccc-----------------------------ccccCCCCEEEEEeChHHHHH
Confidence 589999999999999999988742100000 000123578999999999999
Q ss_pred HHHHHHHHhc------------CCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEE
Q psy16310 274 QVQNHILDAG------------KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 341 (1493)
Q Consensus 274 Qi~~~~~~l~------------~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lV 341 (1493)
|+.+.++... ...++++...+|+++...+...+.+.++|||+||++|..+|.+.. ...|+++++||
T Consensus 52 Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~--r~~L~~Vr~VI 129 (1490)
T PRK09751 52 DVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRA--RETLRGVETVI 129 (1490)
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhh--hhhhccCCEEE
Confidence 9999886421 135799999999999998888888889999999999988876532 23477999999
Q ss_pred EecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhh
Q psy16310 342 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLK 421 (1493)
Q Consensus 342 iDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~ 421 (1493)
|||+|.|++..++.++...+.++... .+.+.|+|+||||+++. ....
T Consensus 130 VDE~H~L~g~kRG~~Lel~LeRL~~l-----------------------------~~~~~QrIgLSATI~n~-eevA--- 176 (1490)
T PRK09751 130 IDEVHAVAGSKRGAHLALSLERLDAL-----------------------------LHTSAQRIGLSATVRSA-SDVA--- 176 (1490)
T ss_pred EecHHHhcccccccHHHHHHHHHHHh-----------------------------CCCCCeEEEEEeeCCCH-HHHH---
Confidence 99999999877888888888877432 13457999999999862 2221
Q ss_pred ccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhh
Q psy16310 422 KGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLN 501 (1493)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1493)
.++....+..+.... . .... ...+.+. .... ..+..
T Consensus 177 --------------------~~L~g~~pv~Iv~~~-~--~r~~-~l~v~vp----------------~~d~----~~~~~ 212 (1490)
T PRK09751 177 --------------------AFLGGDRPVTVVNPP-A--MRHP-QIRIVVP----------------VANM----DDVSS 212 (1490)
T ss_pred --------------------HHhcCCCCEEEECCC-C--Cccc-ceEEEEe----------------cCch----hhccc
Confidence 122110000000000 0 0000 0000000 0000 00000
Q ss_pred ccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcC-------------
Q psy16310 502 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK------------- 568 (1493)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~------------- 568 (1493)
.. .... ..................+...+ ....++||||||+..|+.++..|+...
T Consensus 213 -~~-------~~~~--~~~~~~r~~~i~~~v~~~il~~i-~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~ 281 (1490)
T PRK09751 213 -VA-------SGTG--EDSHAGREGSIWPYIETGILDEV-LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVD 281 (1490)
T ss_pred -cc-------cccc--cccchhhhhhhhHHHHHHHHHHH-hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccch
Confidence 00 0000 00000000000000001112212 235689999999999999999887541
Q ss_pred --------------------CCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHH
Q psy16310 569 --------------------CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628 (1493)
Q Consensus 569 --------------------~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~y 628 (1493)
..+..|||+|++.+|..+++.|++|+++|||||+++++||||++|++||+|+.|.++.+|
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~ 361 (1490)
T PRK09751 282 AAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASG 361 (1490)
T ss_pred hhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHH
Confidence 125679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccC-CCCCeEEEE
Q psy16310 629 IHRSGRTARA-NNEGLTVVL 647 (1493)
Q Consensus 629 iQR~GRagR~-g~~G~~i~l 647 (1493)
+||+|||||. |..+.++++
T Consensus 362 LQRiGRAGR~~gg~s~gli~ 381 (1490)
T PRK09751 362 LQRIGRAGHQVGGVSKGLFF 381 (1490)
T ss_pred HHHhCCCCCCCCCccEEEEE
Confidence 9999999996 223455543
|
|
| >KOG0349|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=331.44 Aligned_cols=332 Identities=26% Similarity=0.353 Sum_probs=221.5
Q ss_pred ccCceEEEEEcccHHHHHHHHHHHHHhc---CCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcccc
Q psy16310 256 TRNKLYALILAPTRELAIQVQNHILDAG---KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332 (1493)
Q Consensus 256 ~~~~~~aLiL~PTreLa~Qi~~~~~~l~---~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~ 332 (1493)
..+.+.++|+-|.|+|+.|.++.++++- ....++..++.||.....|...+..+.+|+|+||+||.+.+..+...
T Consensus 283 ~pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~-- 360 (725)
T KOG0349|consen 283 APNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVT-- 360 (725)
T ss_pred CCCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcccee--
Confidence 3567899999999999999999665553 34457777889999999999999999999999999999999887664
Q ss_pred ccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccch
Q psy16310 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 412 (1493)
Q Consensus 333 ~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~ 412 (1493)
|++++++|+||||.+|..++.+.+.++...++... ......|.+++|||+..
T Consensus 361 -lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~t---------------------------sdg~rlq~~vCsatlh~ 412 (725)
T KOG0349|consen 361 -LTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMT---------------------------SDGFRLQSPVCSATLHI 412 (725)
T ss_pred -eeeeEEEEecchhhhhhcccHHHHHHHhccchhhh---------------------------cCCcccccceeeeEEeE
Confidence 44899999999999999999998888887765431 12355799999999863
Q ss_pred h-hhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcc
Q psy16310 413 S-LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 491 (1493)
Q Consensus 413 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (1493)
- +........ .-|..+++...-..+.+..+...++.... +.
T Consensus 413 feVkk~~ervm------------------------hfptwVdLkgeD~vpetvHhvv~lv~p~~-d~------------- 454 (725)
T KOG0349|consen 413 FEVKKVGERVM------------------------HFPTWVDLKGEDLVPETVHHVVKLVCPSV-DG------------- 454 (725)
T ss_pred EEeeehhhhhc------------------------cCceeEecccccccchhhccceeecCCcc-Cc-------------
Confidence 1 111110000 01111111111111111111111100000 00
Q ss_pred hhhHHHhhhhccCCcccccccccc-ccccccccccccccCchhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHhcC-
Q psy16310 492 LCEEIQDLLNIKSPKIVDLTEKIG-ITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLK- 568 (1493)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~- 568 (1493)
....++..+.....-..+-..... .+...++...+ -|-.+-...+..+ ..++||||.|..+|..|.+++...|
T Consensus 455 sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~ki----lkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg 530 (725)
T KOG0349|consen 455 SWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKI----LKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGG 530 (725)
T ss_pred cHHHHhhhhccCCcccccccccccCCCCChhhhhHH----hcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCC
Confidence 000111111100000000000000 00000000000 0001111122222 4699999999999999999998874
Q ss_pred --CCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEE
Q psy16310 569 --CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646 (1493)
Q Consensus 569 --~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~ 646 (1493)
+++..+||+..+.+|...++.|+.+..+.||||||++|||||.++-++||..+|.+...|+||+||+||+.+-|.+|.
T Consensus 531 ~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglais 610 (725)
T KOG0349|consen 531 KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAIS 610 (725)
T ss_pred ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEE
Confidence 578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcchhhhhh
Q psy16310 647 LIESDEIPLKTKF 659 (1493)
Q Consensus 647 l~~~~e~~~~~~l 659 (1493)
|+...-...+..+
T Consensus 611 lvat~~ekvwyh~ 623 (725)
T KOG0349|consen 611 LVATVPEKVWYHW 623 (725)
T ss_pred Eeeccchheeehh
Confidence 9876555555444
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=399.64 Aligned_cols=334 Identities=16% Similarity=0.143 Sum_probs=246.7
Q ss_pred HHHHHHHH-CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHH
Q psy16310 778 TIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 856 (1493)
Q Consensus 778 ~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (1493)
++.+.+++ .|| .||++|..+||.++ .|+|++++||||||||++++++++...
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il-~G~d~li~APTGsGKTl~~~~~al~~~------------------------- 119 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRIL-RGKSFSIVAPTGMGKSTFGAFIALFLA------------------------- 119 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHH-cCCCEEEEEcCCCCHHHHHHHHHHHHH-------------------------
Confidence 44556665 799 69999999999654 788999999999999996665544321
Q ss_pred HHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC--CcEEEEEEcCCCHHHHHH---HhcC-CCcEE
Q psy16310 857 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT--PVKVACVVGGMSTEKQLR---ILNK-CPHIL 930 (1493)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~--~~~v~~~~gg~~~~~~~~---~l~~-~~~Il 930 (1493)
..+.++|||+||++|+.|+++.++.++..+ ++++..++||.+...+.. .+.. .++|+
T Consensus 120 -----------------~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dIL 182 (1638)
T PRK14701 120 -----------------LKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDIL 182 (1638)
T ss_pred -----------------hcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEE
Confidence 134579999999999999999999988765 467788899998776643 3333 58999
Q ss_pred EECcHHHHHHHHhCcCccccccceeEEEecccchhcc-----------CCChhHHHH-HHHHhcc---------------
Q psy16310 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-----------SGHFPELKN-ILDRVTM--------------- 983 (1493)
Q Consensus 931 V~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~-----------~~~~~~l~~-il~~l~~--------------- 983 (1493)
|+||++|.+.+... . ..++++||+||||+|++ .||.+++.. ++..+..
T Consensus 183 V~TPgrL~~~~~~l----~-~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~ 257 (1638)
T PRK14701 183 VTTAQFLARNFPEM----K-HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREI 257 (1638)
T ss_pred EECCchhHHhHHHH----h-hCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhh
Confidence 99999998876531 1 14689999999999987 478777764 2221110
Q ss_pred -----cCCCCCce-EEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeE
Q psy16310 984 -----TETSQPRQ-TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 1057 (1493)
Q Consensus 984 -----~~~~~~~q-~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1057 (1493)
...+..+| ++++|||++..... ... +..+..+.+........++.+.+
T Consensus 258 l~~~~~~~~~~~~~ll~~SAT~~~r~~~-~~l-------------------------~~~~l~f~v~~~~~~lr~i~~~y 311 (1638)
T PRK14701 258 LNKEIEKIGNKIGCLIVASATGKAKGDR-VKL-------------------------YRELLGFEVGSGRSALRNIVDVY 311 (1638)
T ss_pred hhhhhhhcCCCccEEEEEecCCCchhHH-HHH-------------------------hhcCeEEEecCCCCCCCCcEEEE
Confidence 01123445 67799999853110 000 01122233333333455667776
Q ss_pred EEecccchhhHHHHHHHhCCCcEEEEecchhh---HHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEee
Q psy16310 1058 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISS---VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134 (1493)
Q Consensus 1058 ~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~---~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaT 1134 (1493)
+.+....+ ..+..++...+..+||||+|+.. |+.++..|...|+++..+||+ |..++++|++|+++|||||
T Consensus 312 i~~~~~~k-~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT 385 (1638)
T PRK14701 312 LNPEKIIK-EHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGV 385 (1638)
T ss_pred EECCHHHH-HHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEe
Confidence 66554444 45667777767789999999876 589999999999999999995 8899999999999999999
Q ss_pred ----hhhhccccCCC-ccEEEEecCCC---ChhHHHHHH-------------hccCCCCCCCeEEEEecCCCHHHHHHH
Q psy16310 1135 ----DVAARGLDIPG-IEHVIHYHVPR---TSEIYIHRS-------------GRTARANNEGLTLVLIESDEIPLYIKM 1192 (1493)
Q Consensus 1135 ----dv~~~GiDip~-v~~VI~~d~p~---s~~~yiqr~-------------GR~gR~g~~G~~i~l~~~~e~~~~~~~ 1192 (1493)
++++||||+|+ |++|||||+|. +++.|.|.. ||+||.|..+.+++.+...+...++++
T Consensus 386 ~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 464 (1638)
T PRK14701 386 ATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSI 464 (1638)
T ss_pred cCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHH
Confidence 59999999999 99999999999 888777765 999999988888755544444444444
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=364.28 Aligned_cols=317 Identities=17% Similarity=0.214 Sum_probs=223.3
Q ss_pred cHHHHhhHHHhhccCCcEEEEccCCCcchhH---------hhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHh
Q psy16310 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLA---------FGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEE 862 (1493)
Q Consensus 792 t~iQ~~~i~~~l~~~~dvlv~apTGsGKTla---------~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (1493)
..+|.++++ .+..+++++++|+||||||.+ |++|.+..+..-
T Consensus 166 ~~iQ~qil~-~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~---------------------------- 216 (675)
T PHA02653 166 PDVQLKIFE-AWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKI---------------------------- 216 (675)
T ss_pred HHHHHHHHH-HHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhc----------------------------
Confidence 468999998 566889999999999999987 444444433110
Q ss_pred hhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCC---CCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHH
Q psy16310 863 SANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY---TPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939 (1493)
Q Consensus 863 ~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~---~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~ 939 (1493)
.....+.+++|++||||||.|+...+.....+ .+..+.+.+||... .+.....+..+|+|+|++..
T Consensus 217 --------~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-- 285 (675)
T PHA02653 217 --------DPNFIERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-- 285 (675)
T ss_pred --------ccccCCcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc--
Confidence 00123458999999999999999999876544 36778889999873 22222334679999998631
Q ss_pred HHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccc
Q psy16310 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKV 1019 (1493)
Q Consensus 940 ~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~ 1019 (1493)
...+.++++|||||||.+...+ +.+..++..+. +..+|+++||||++.++..+. ...
T Consensus 286 --------l~~L~~v~~VVIDEaHEr~~~~--DllL~llk~~~----~~~rq~ILmSATl~~dv~~l~-~~~-------- 342 (675)
T PHA02653 286 --------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVARKHI----DKIRSLFLMTATLEDDRDRIK-EFF-------- 342 (675)
T ss_pred --------ccccccCCEEEccccccCccch--hHHHHHHHHhh----hhcCEEEEEccCCcHhHHHHH-HHh--------
Confidence 1246689999999999987765 34445554332 233699999999987654432 111
Q ss_pred cCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEec----------ccchhhHHHHHHH---hCCCcEEEEecc
Q psy16310 1020 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK----------HDEKDSYLYYFIL---QHPGRTLVFCNS 1086 (1493)
Q Consensus 1020 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~k~~~l~~~l~---~~~~~~IVF~~s 1086 (1493)
.++..+.+... ....+.+.++... ...+...+..+.. ..++.+||||++
T Consensus 343 ----------------~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg 404 (675)
T PHA02653 343 ----------------PNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVAS 404 (675)
T ss_pred ----------------cCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECc
Confidence 12222222211 1122222222111 1112122222211 235789999999
Q ss_pred hhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHH-hcCCCCeEEeehhhhccccCCCccEEEEec---CCC----
Q psy16310 1087 ISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRF-RDQNNSILLATDVAARGLDIPGIEHVIHYH---VPR---- 1156 (1493)
Q Consensus 1087 ~~~~~~l~~~L~~~--~~~~~~lhg~m~~~~R~~~~~~F-~~g~~~VLVaTdv~~~GiDip~v~~VI~~d---~p~---- 1156 (1493)
+..++.++..|... ++.+..+||+|++. ++++++| ++|+.+||||||+++||||||+|++||+++ .|.
T Consensus 405 ~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g 482 (675)
T PHA02653 405 VSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGG 482 (675)
T ss_pred HHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccC
Confidence 99999999999887 68999999999985 5677787 689999999999999999999999999998 665
Q ss_pred -----ChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHH
Q psy16310 1157 -----TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192 (1493)
Q Consensus 1157 -----s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~ 1192 (1493)
|.++|+||+|||||. ++|.|+.|+++.+...+.++
T Consensus 483 ~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri 522 (675)
T PHA02653 483 KEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRI 522 (675)
T ss_pred cccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHH
Confidence 888999999999999 79999999988765444444
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=385.89 Aligned_cols=297 Identities=17% Similarity=0.229 Sum_probs=218.1
Q ss_pred HHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHH
Q psy16310 778 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 857 (1493)
Q Consensus 778 ~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (1493)
.+.+.+.+.....|||+|..++|. +..|+|++++||||||||+ |++|+...+.
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~-il~G~d~vi~ApTGsGKT~-f~l~~~~~l~------------------------- 118 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKR-VLRGDSFAIIAPTGVGKTT-FGLAMSLFLA------------------------- 118 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHH-HhCCCeEEEECCCCCCHHH-HHHHHHHHHH-------------------------
Confidence 344555554555899999999995 5578999999999999997 7777765442
Q ss_pred HHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEE---EEEcCCCHHHHHH---Hhc-CCCcEE
Q psy16310 858 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVA---CVVGGMSTEKQLR---ILN-KCPHIL 930 (1493)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~---~~~gg~~~~~~~~---~l~-~~~~Il 930 (1493)
..++++|||+|||+||.|+++.++.++...++.+. .++||.+...+.. .+. .+++|+
T Consensus 119 ----------------~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIl 182 (1171)
T TIGR01054 119 ----------------KKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDIL 182 (1171)
T ss_pred ----------------hcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEE
Confidence 12467999999999999999999999887776543 4679888765433 333 358999
Q ss_pred EECcHHHHHHHHhCcCccccccceeEEEecccchhcc-----------CCChhH-HHHHHHHhcc---------------
Q psy16310 931 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-----------SGHFPE-LKNILDRVTM--------------- 983 (1493)
Q Consensus 931 V~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~-----------~~~~~~-l~~il~~l~~--------------- 983 (1493)
|+||++|.+.+..- . . +++++|+||||+|++ +||.++ +..++..+..
T Consensus 183 V~Tp~rL~~~~~~l----~-~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~ 256 (1171)
T TIGR01054 183 ITTTMFLSKNYDEL----G-P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLE 256 (1171)
T ss_pred EECHHHHHHHHHHh----c-C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHH
Confidence 99999999887631 1 1 689999999999998 678764 5555443210
Q ss_pred --cCCCCCce--EEEEecc-cccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEE
Q psy16310 984 --TETSQPRQ--TFVFSAT-LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 1058 (1493)
Q Consensus 984 --~~~~~~~q--~ll~SAT-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1058 (1493)
...+..+| +++|||| .|..+...+. .....+.+........++.+.++
T Consensus 257 ~~~~~~~~~q~~li~~SAT~~p~~~~~~l~---------------------------r~ll~~~v~~~~~~~r~I~~~~~ 309 (1171)
T TIGR01054 257 LLEAIPGKKRGCLIVSSATGRPRGKRAKLF---------------------------RELLGFEVGGGSDTLRNVVDVYV 309 (1171)
T ss_pred HHHhhhhccCcEEEEEeCCCCccccHHHHc---------------------------ccccceEecCccccccceEEEEE
Confidence 01123344 6779999 5654432110 01111222222233455666655
Q ss_pred EecccchhhHHHHHHHhCCCcEEEEecch---hhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEe--
Q psy16310 1059 LCKHDEKDSYLYYFILQHPGRTLVFCNSI---SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA-- 1133 (1493)
Q Consensus 1059 ~~~~~~k~~~l~~~l~~~~~~~IVF~~s~---~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVa-- 1133 (1493)
.+.. +...+..++...+.++||||+|+ +.|+.++..|...|+++..+||+|++ .++++|++|+++||||
T Consensus 310 ~~~~--~~~~L~~ll~~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata 383 (1171)
T TIGR01054 310 EDED--LKETLLEIVKKLGTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVA 383 (1171)
T ss_pred eccc--HHHHHHHHHHHcCCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEec
Confidence 4432 23456666666678899999999 99999999999999999999999973 6899999999999999
Q ss_pred --ehhhhccccCCC-ccEEEEecCCC
Q psy16310 1134 --TDVAARGLDIPG-IEHVIHYHVPR 1156 (1493)
Q Consensus 1134 --Tdv~~~GiDip~-v~~VI~~d~p~ 1156 (1493)
||+++||||+|+ |++|||||+|.
T Consensus 384 ~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 384 SYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred cccCcccccCCCCccccEEEEECCCC
Confidence 499999999999 89999999884
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=365.70 Aligned_cols=298 Identities=21% Similarity=0.250 Sum_probs=222.8
Q ss_pred HhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEE
Q psy16310 801 SALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880 (1493)
Q Consensus 801 ~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 880 (1493)
.++..+.++|++|+||||||.+|.+|+++... .+.+++
T Consensus 12 ~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------------------------------------------~~~~il 49 (819)
T TIGR01970 12 DALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------------------------------------------IGGKII 49 (819)
T ss_pred HHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------------------------------------------cCCeEE
Confidence 46667889999999999999999999986541 124799
Q ss_pred EEcccHHHHHHHHHHHH-HhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEe
Q psy16310 881 ILAPTRELAIQVQNHIL-DAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVI 959 (1493)
Q Consensus 881 il~PTreLa~Q~~~~~~-~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVl 959 (1493)
|+.|||++|.|+++.+. .++...+..|+..+++.. ......+|+|+|||+|++.+... ..+.++++|||
T Consensus 50 vlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d----~~L~~v~~VIi 119 (819)
T TIGR01970 50 MLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD----PELDGVGALIF 119 (819)
T ss_pred EEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC----cccccCCEEEE
Confidence 99999999999999885 455556677777666532 22345789999999999988753 24778999999
Q ss_pred cccc-hhccCCChhH-HHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCC
Q psy16310 960 DETD-RMIESGHFPE-LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS 1037 (1493)
Q Consensus 960 DEah-~ll~~~~~~~-l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1037 (1493)
||+| ++++.++.-. +..+...+ ..+.|+++||||++...... .. .+
T Consensus 120 DEaHER~L~~Dl~L~ll~~i~~~l-----r~dlqlIlmSATl~~~~l~~---~l------------------------~~ 167 (819)
T TIGR01970 120 DEFHERSLDADLGLALALDVQSSL-----REDLKILAMSATLDGERLSS---LL------------------------PD 167 (819)
T ss_pred eccchhhhccchHHHHHHHHHHhc-----CCCceEEEEeCCCCHHHHHH---Hc------------------------CC
Confidence 9999 5777665432 23344433 35789999999998543211 10 11
Q ss_pred CcEEeccccccccccceeeEEEecccchh-----hHHHHHHHhCCCcEEEEecchhhHHHHHHHHHh---cCCCcccccc
Q psy16310 1038 PKIVDLTEKIGITKTLTESKILCKHDEKD-----SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM---LKCSPLPLHA 1109 (1493)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~---~~~~~~~lhg 1109 (1493)
...+..... ...+...+..+...++. ..+...+....+.+||||+++..++.++..|.. .++.+..+||
T Consensus 168 ~~vI~~~gr---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg 244 (819)
T TIGR01970 168 APVVESEGR---SFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYG 244 (819)
T ss_pred CcEEEecCc---ceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 111221111 11123333333322221 223334445578999999999999999999987 3788999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCC------------------ChhHHHHHHhccCCC
Q psy16310 1110 SMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR------------------TSEIYIHRSGRTARA 1171 (1493)
Q Consensus 1110 ~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~------------------s~~~yiqr~GR~gR~ 1171 (1493)
+|++.+|..+++.|++|..+||||||++++|||||+|++||++++|. |..+|+||+|||||.
T Consensus 245 ~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~ 324 (819)
T TIGR01970 245 ELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL 324 (819)
T ss_pred CCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC
Confidence 99999999999999999999999999999999999999999999875 235699999999999
Q ss_pred CCCCeEEEEecCCCH
Q psy16310 1172 NNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1172 g~~G~~i~l~~~~e~ 1186 (1493)
++|.||.|++..+.
T Consensus 325 -~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 325 -EPGVCYRLWSEEQH 338 (819)
T ss_pred -CCCEEEEeCCHHHH
Confidence 79999999987654
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=379.36 Aligned_cols=327 Identities=20% Similarity=0.251 Sum_probs=228.7
Q ss_pred HHHHH-CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHH
Q psy16310 164 RALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 242 (1493)
Q Consensus 164 ~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1493)
+.+.+ .|+ .|+++|..++|. +..|+|++++||||||||. |++|++..+.
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~-il~g~dv~i~ApTGsGKT~-f~l~~~~~l~--------------------------- 120 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKR-LLLGESFAIIAPTGVGKTT-FGLVMSLYLA--------------------------- 120 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHH-HHCCCcEEEEcCCCCCHHH-HHHHHHHHHH---------------------------
Confidence 34434 377 799999999995 5578999999999999996 5566554331
Q ss_pred HHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCH-----HHHHHHhc-CCCCEEEeC
Q psy16310 243 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMST-----EKQLRILN-KCPHILVAT 316 (1493)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~-----~~~~~~l~-~~~~IiV~T 316 (1493)
..+.++|||+|||+||.|+++.+..++...++.+..++|+... ......+. +.++|+|+|
T Consensus 121 --------------~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~T 186 (1176)
T PRK09401 121 --------------KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTT 186 (1176)
T ss_pred --------------hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEEC
Confidence 1246799999999999999999999998888888888876542 22333344 458999999
Q ss_pred cHHHHHHHHcCCccccccccccEEEEecCchhhh-----------cCCh-hhHHHHHHhhccccCCCccccccccCCcch
Q psy16310 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-----------SGHF-PELKNILDRVTMTETSQPRQTMIESGHFPE 384 (1493)
Q Consensus 317 P~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-----------~~~~-~~l~~il~~l~~~~~~~~~~~~~~~~~~~~ 384 (1493)
|++|.+++. .+ ...++++|||||||+|++ +||. +.+..++..++..... ......
T Consensus 187 p~rL~~~~~--~l---~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~--------~~~~~~ 253 (1176)
T PRK09401 187 SQFLSKNFD--EL---PKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKY--------EEIYEK 253 (1176)
T ss_pred HHHHHHHHH--hc---cccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhccccccc--------chhhhH
Confidence 999998876 22 233689999999999996 5675 6788888777531100 000011
Q ss_pred hhhhhhhccccCCCCCceEEEEeeccchh-hhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccc
Q psy16310 385 LKNILDRVTMTETSQPRQTFVFSATLTHS-LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKT 463 (1493)
Q Consensus 385 ~~~~~~~~~~~~~~~~~q~il~SATl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1493)
+..+.... ........|+++||||+++. +...+. .+++. +...
T Consensus 254 i~~l~~~i-~~~~~~~~q~ilfSAT~~~~~~~~~l~---------------------~~ll~------~~v~-------- 297 (1176)
T PRK09401 254 IRELEEKI-AELKDKKGVLVVSSATGRPRGNRVKLF---------------------RELLG------FEVG-------- 297 (1176)
T ss_pred HHHHHHhh-hhcccCCceEEEEeCCCCccchHHHHh---------------------hccce------EEec--------
Confidence 11111111 11112368999999999853 221100 00000 0000
Q ss_pred cchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC
Q psy16310 464 LTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 543 (1493)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 543 (1493)
.......++.+.++.+. .+...+..++...
T Consensus 298 ------------------------------------------------~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l 327 (1176)
T PRK09401 298 ------------------------------------------------SPVFYLRNIVDSYIVDE--DSVEKLVELVKRL 327 (1176)
T ss_pred ------------------------------------------------CcccccCCceEEEEEcc--cHHHHHHHHHHhc
Confidence 00000011112222222 4555667777666
Q ss_pred CCcEEEEecchhh---HHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEE----echhhccCCCCC-CcE
Q psy16310 544 PGRTLVFCNSISS---VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA----TDVAARGLDIPG-IEH 615 (1493)
Q Consensus 544 ~~~~IIF~~s~~~---a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVa----Tdv~~rGlDip~-v~~ 615 (1493)
+.++||||+++.. |+.++..|...|+.+..+||+| .+.+++|++|+++|||| |++++||||+|+ |++
T Consensus 328 ~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~Iry 402 (1176)
T PRK09401 328 GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRY 402 (1176)
T ss_pred CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeE
Confidence 7799999999888 9999999999999999999999 23469999999999999 699999999999 899
Q ss_pred EEEecCCC------ChHHHHHHHhccccC
Q psy16310 616 VIHYHVPR------TSEIYIHRSGRTARA 638 (1493)
Q Consensus 616 VI~yd~P~------s~~~yiQR~GRagR~ 638 (1493)
|||||+|. ....|.||.||+...
T Consensus 403 VI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 403 AIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred EEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 99999998 678899999998743
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=360.16 Aligned_cols=321 Identities=18% Similarity=0.235 Sum_probs=214.7
Q ss_pred hHHHHhhhhhhhccCCcEEEEccCCCchhHH---------HHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHh
Q psy16310 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLA---------FGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEE 245 (1493)
Q Consensus 175 t~iQ~~~i~~~l~~~~dviv~apTGSGKTl~---------~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1493)
..+|.++++ .+..++++|++|+||||||.+ |++|.+..+..-
T Consensus 166 ~~iQ~qil~-~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~---------------------------- 216 (675)
T PHA02653 166 PDVQLKIFE-AWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKI---------------------------- 216 (675)
T ss_pred HHHHHHHHH-HHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhc----------------------------
Confidence 467999998 566889999999999999997 444554433110
Q ss_pred hhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCC---CCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHH
Q psy16310 246 SANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY---TPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322 (1493)
Q Consensus 246 ~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~---~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~ 322 (1493)
.......+++|++|||+||.|+...+....++ .++.+...+|+... .......++.+|+|+|++..
T Consensus 217 --------~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-- 285 (675)
T PHA02653 217 --------DPNFIERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-- 285 (675)
T ss_pred --------ccccCCcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc--
Confidence 00123457999999999999999998775544 46778899999873 22222233679999998631
Q ss_pred HHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCce
Q psy16310 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQ 402 (1493)
Q Consensus 323 ~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 402 (1493)
...|.++++|||||||.+..++ +.+..++..+. ...+|
T Consensus 286 --------l~~L~~v~~VVIDEaHEr~~~~--DllL~llk~~~--------------------------------~~~rq 323 (675)
T PHA02653 286 --------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVARKHI--------------------------------DKIRS 323 (675)
T ss_pred --------ccccccCCEEEccccccCccch--hHHHHHHHHhh--------------------------------hhcCE
Confidence 1236689999999999987654 34444443221 12258
Q ss_pred EEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHH
Q psy16310 403 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 482 (1493)
Q Consensus 403 ~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1493)
+++||||++.++..+... +. .+..+.+.+. ....+.+.++....
T Consensus 324 ~ILmSATl~~dv~~l~~~-----------------------~~--~p~~I~I~gr--t~~pV~~~yi~~~~--------- 367 (675)
T PHA02653 324 LFLMTATLEDDRDRIKEF-----------------------FP--NPAFVHIPGG--TLFPISEVYVKNKY--------- 367 (675)
T ss_pred EEEEccCCcHhHHHHHHH-----------------------hc--CCcEEEeCCC--cCCCeEEEEeecCc---------
Confidence 999999998765443211 10 1111111000 00000000000000
Q ss_pred HHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHH---hhCCCcEEEEecchhhHHH
Q psy16310 483 FILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI---LQHPGRTLVFCNSISSVKR 559 (1493)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l---~~~~~~~IIF~~s~~~a~~ 559 (1493)
. + .....+. ...+...+..+. ...++++||||+++.+++.
T Consensus 368 ----~-----------------~-------------~~~~~y~---~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~ 410 (675)
T PHA02653 368 ----N-----------------P-------------KNKRAYI---EEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEE 410 (675)
T ss_pred ----c-----------------c-------------ccchhhh---HHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHH
Confidence 0 0 0000000 001111111111 1235689999999999999
Q ss_pred HHHHHHhc--CCCccccccCCCHHHHHHHHHHH-hcCCCeEEEEechhhccCCCCCCcEEEEec---CCC---------C
Q psy16310 560 LTQLLTML--KCSPLPLHASMNQRQRLKNLDRF-RDQNNSILLATDVAARGLDIPGIEHVIHYH---VPR---------T 624 (1493)
Q Consensus 560 L~~~L~~~--~~~~~~lhg~~~~~~R~~vl~~F-r~g~~~VLVaTdv~~rGlDip~v~~VI~yd---~P~---------s 624 (1493)
+++.|... ++.+..+||+|++. .++++.| ++|+.+||||||+|+||||||+|++||++| .|. |
T Consensus 411 l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iS 488 (675)
T PHA02653 411 YKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFIS 488 (675)
T ss_pred HHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccC
Confidence 99999877 68999999999985 4667777 789999999999999999999999999999 665 8
Q ss_pred hHHHHHHHhccccCCCCCeEEEEecCCcc
Q psy16310 625 SEIYIHRSGRTARANNEGLTVVLIESDEI 653 (1493)
Q Consensus 625 ~~~yiQR~GRagR~g~~G~~i~l~~~~e~ 653 (1493)
..+|+||+|||||. .+|.|+.|+++++.
T Consensus 489 kasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 489 KSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred HHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 88999999999999 69999999988764
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=321.89 Aligned_cols=347 Identities=22% Similarity=0.275 Sum_probs=239.6
Q ss_pred CCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 787 g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
+.-+|+.||......++. +|++++.|||-|||+++++-+...+..
T Consensus 12 ~~ie~R~YQ~~i~a~al~--~NtLvvlPTGLGKT~IA~~V~~~~l~~--------------------------------- 56 (542)
T COG1111 12 NTIEPRLYQLNIAAKALF--KNTLVVLPTGLGKTFIAAMVIANRLRW--------------------------------- 56 (542)
T ss_pred ccccHHHHHHHHHHHHhh--cCeEEEecCCccHHHHHHHHHHHHHHh---------------------------------
Confidence 445789999999877763 499999999999999999888876622
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcC
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~ 946 (1493)
.++ ++|+|+||+.|+.|+++.|+++....+-.++.++|.....+....+.++ .|+|+||+.+.+.|..|..
T Consensus 57 -------~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~~-kVfvaTPQvveNDl~~Gri 127 (542)
T COG1111 57 -------FGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAKK-KVFVATPQVVENDLKAGRI 127 (542)
T ss_pred -------cCC-eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhhC-CEEEeccHHHHhHHhcCcc
Confidence 233 7999999999999999999999877778899999998888766555543 8999999999999988876
Q ss_pred ccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCccc--ccCCC-
Q psy16310 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK--VSKGD- 1023 (1493)
Q Consensus 947 ~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~--~~~~~- 1023 (1493)
+ +.++.++||||||+-....-+..+....... ..+..++++|||+..+.........+...... ....+
T Consensus 128 d---~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~-----~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~ 199 (542)
T COG1111 128 D---LDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS-----AKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDP 199 (542)
T ss_pred C---hHHceEEEechhhhccCcchHHHHHHHHHHh-----ccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCc
Confidence 5 4578999999999976543333333322111 35567999999988654332211100000000 00000
Q ss_pred -------------------chhHHH-----------------------------------H-hHhccCCC---cEEe---
Q psy16310 1024 -------------------PSIKRL-----------------------------------Q-DLLNIKSP---KIVD--- 1042 (1493)
Q Consensus 1024 -------------------~~~~~l-----------------------------------~-~~~~~~~~---~~~~--- 1042 (1493)
+.+..+ . ..+..... ....
T Consensus 200 DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~ 279 (542)
T COG1111 200 DVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLS 279 (542)
T ss_pred cHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHH
Confidence 000000 0 00000000 0000
Q ss_pred -------------ccccc---------------ccccc-------------------ceeeEEEecccchhhHHHHHHHh
Q psy16310 1043 -------------LTEKI---------------GITKT-------------------LTESKILCKHDEKDSYLYYFILQ 1075 (1493)
Q Consensus 1043 -------------~~~~~---------------~~~~~-------------------~~~~~~~~~~~~k~~~l~~~l~~ 1075 (1493)
+.+.. ..... +...........|...+..++..
T Consensus 280 ~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke 359 (542)
T COG1111 280 VLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKE 359 (542)
T ss_pred HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHH
Confidence 00000 00000 00000011122334444444432
Q ss_pred C-----CCcEEEEecchhhHHHHHHHHHhcCCCcc-c--------cccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccc
Q psy16310 1076 H-----PGRTLVFCNSISSVKRLTQLLTMLKCSPL-P--------LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141 (1493)
Q Consensus 1076 ~-----~~~~IVF~~s~~~~~~l~~~L~~~~~~~~-~--------lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~Gi 1141 (1493)
. ..++|||++.+.+|+.++..|...+..+. . ...||+|.++..++++|+.|+++|||||+++++|+
T Consensus 360 ~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGL 439 (542)
T COG1111 360 QLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGL 439 (542)
T ss_pred HHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccC
Confidence 2 45899999999999999999999887774 2 23579999999999999999999999999999999
Q ss_pred cCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1142 Dip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
|||+|+.||.|++-.|..-++||.|||||. +.|..++|++.+..
T Consensus 440 DIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtr 483 (542)
T COG1111 440 DIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTR 483 (542)
T ss_pred CCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCch
Confidence 999999999999999999999999999996 89999999998743
|
|
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=345.93 Aligned_cols=374 Identities=21% Similarity=0.289 Sum_probs=277.5
Q ss_pred HHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhh
Q psy16310 784 YQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863 (1493)
Q Consensus 784 ~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1493)
.-.+|+++..+|..++|.++..+.|+|+|||||||||.+|+|.|++.+-....
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~--------------------------- 156 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEE--------------------------- 156 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhcc---------------------------
Confidence 34688999999999999999999999999999999999999999988854110
Q ss_pred hcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHh
Q psy16310 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 943 (1493)
Q Consensus 864 ~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~ 943 (1493)
.........+++||+|+++||..+++.|.+.+..+|+.|..++|++...+.. . ..++|||+||++ ||.+.+
T Consensus 157 -----~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te-i--~~tqiiVTTPEK-wDvvTR 227 (1230)
T KOG0952|consen 157 -----QGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE-I--ADTQIIVTTPEK-WDVVTR 227 (1230)
T ss_pred -----ccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH-H--HhcCEEEecccc-eeeeee
Confidence 0113355678999999999999999999998888999999999998765544 2 246999999999 677754
Q ss_pred CcC-ccccccceeEEEecccchhccCCChhHHHHHHHHhccc--CCCCCceEEEEecccccchHhHHhhhccCcCccccc
Q psy16310 944 GHF-HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT--ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVS 1020 (1493)
Q Consensus 944 ~~~-~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~--~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~ 1020 (1493)
... ....+..+++|||||+| |+....++.++.|+.+.... .+-...+++++|||+|+-
T Consensus 228 k~~~d~~l~~~V~LviIDEVH-lLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~------------------ 288 (1230)
T KOG0952|consen 228 KSVGDSALFSLVRLVIIDEVH-LLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNY------------------ 288 (1230)
T ss_pred eeccchhhhhheeeEEeeeeh-hhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH------------------
Confidence 432 23446689999999999 56667889999999887521 223467899999999953
Q ss_pred CCCchhHHHHhHhccCCCc-EEeccccccccccceeeEEEeccc---ch----hhHHHHHH---HhCCCcEEEEecchhh
Q psy16310 1021 KGDPSIKRLQDLLNIKSPK-IVDLTEKIGITKTLTESKILCKHD---EK----DSYLYYFI---LQHPGRTLVFCNSISS 1089 (1493)
Q Consensus 1021 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~k----~~~l~~~l---~~~~~~~IVF~~s~~~ 1089 (1493)
.++..++....+. ++.+... ..+-.+.+..+-+... .. ....+.-+ ...+.+++|||.++..
T Consensus 289 ------eDvA~fL~vn~~~glfsFd~~-yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~ 361 (1230)
T KOG0952|consen 289 ------EDVARFLRVNPYAGLFSFDQR-YRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNE 361 (1230)
T ss_pred ------HHHHHHhcCCCccceeeeccc-ccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChH
Confidence 2233333333211 1122111 1222333333333222 11 11111111 2347899999999999
Q ss_pred HHHHHHHHHhc-----------------------CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCc
Q psy16310 1090 VKRLTQLLTML-----------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 1146 (1493)
Q Consensus 1090 ~~~l~~~L~~~-----------------------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v 1146 (1493)
+.+.|+.|.+. ......+|++|...+|..+.+.|..|.++||+||..+++|+++|+-
T Consensus 362 Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~ 441 (1230)
T KOG0952|consen 362 TIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAY 441 (1230)
T ss_pred HHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcce
Confidence 99999888543 1346679999999999999999999999999999999999999987
Q ss_pred cEEEE----ecCCC------ChhHHHHHHhccCCC--CCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHH
Q psy16310 1147 EHVIH----YHVPR------TSEIYIHRSGRTARA--NNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSL 1214 (1493)
Q Consensus 1147 ~~VI~----~d~p~------s~~~yiqr~GR~gR~--g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 1214 (1493)
.++|- ||.-. ++.+-+|..|||||. +..|.++++.+.+.+..|..++.. ..|+++.+..-
T Consensus 442 aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~--------~~piES~~~~~ 513 (1230)
T KOG0952|consen 442 AVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTG--------QNPIESQLLPC 513 (1230)
T ss_pred EEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcC--------CChhHHHHHHH
Confidence 66662 55443 466789999999997 678999999999988999888765 45888888888
Q ss_pred HHHHHHHHHHHHH
Q psy16310 1215 IKKRIDLAKSIEY 1227 (1493)
Q Consensus 1215 i~~~~~~~~~~~~ 1227 (1493)
+.+.+++.-.+..
T Consensus 514 L~dnLnAEi~LgT 526 (1230)
T KOG0952|consen 514 LIDNLNAEISLGT 526 (1230)
T ss_pred HHHhhhhheeece
Confidence 7777766544433
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=325.60 Aligned_cols=340 Identities=22% Similarity=0.257 Sum_probs=266.9
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchh
Q psy16310 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLE 849 (1493)
Q Consensus 770 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~ 849 (1493)
..++.+++.+.+.|+..||+.+.|+|..|+..-|..|.|.+++++|+||||++.-++-+..++.
T Consensus 196 vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~---------------- 259 (830)
T COG1202 196 VDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS---------------- 259 (830)
T ss_pred ccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh----------------
Confidence 5678999999999999999999999999999889999999999999999999998887777654
Q ss_pred HHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH----HhcC
Q psy16310 850 EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR----ILNK 925 (1493)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~----~l~~ 925 (1493)
.+.+.|||+|..+||+|-++.|+.....+++.+.+-+|-........ ....
T Consensus 260 -------------------------~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~ 314 (830)
T COG1202 260 -------------------------GGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSP 314 (830)
T ss_pred -------------------------CCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCC
Confidence 34579999999999999999999988888999988887543333211 1123
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHh
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
.+||||||.+-+-.+|+.+ ..+.+++.+||||+|.+-+...++.+..++.++... -+..|++.+|||+.+...-
T Consensus 315 dADIIVGTYEGiD~lLRtg----~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l--~~~AQ~i~LSATVgNp~el 388 (830)
T COG1202 315 DADIIVGTYEGIDYLLRTG----KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYL--FPGAQFIYLSATVGNPEEL 388 (830)
T ss_pred CCcEEEeechhHHHHHHcC----CcccccceEEeeeeeeccchhcccchhhHHHHHHHh--CCCCeEEEEEeecCChHHH
Confidence 4699999999988888776 346789999999999887777777888888777543 3579999999999755321
Q ss_pred HHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEec-ccchhhHHHHHHH---------h
Q psy16310 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYLYYFIL---------Q 1075 (1493)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~---------~ 1075 (1493)
. ..++. ..+.. ...+-.+....+.|. ..+|...+..+.. .
T Consensus 389 A------------------------~~l~a---~lV~y---~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg 438 (830)
T COG1202 389 A------------------------KKLGA---KLVLY---DERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKG 438 (830)
T ss_pred H------------------------HHhCC---eeEee---cCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccC
Confidence 1 11111 11111 112223333344555 3445444444432 2
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEE---e
Q psy16310 1076 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH---Y 1152 (1493)
Q Consensus 1076 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~---~ 1152 (1493)
+.|+||||++|+..|..|+..|...|+++.+||++|+..+|..+...|.++++.++|+|.+++.|+|+|.-.+|+- +
T Consensus 439 ~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaM 518 (830)
T COG1202 439 YRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAM 518 (830)
T ss_pred cCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHc
Confidence 3689999999999999999999999999999999999999999999999999999999999999999998665542 1
Q ss_pred cC-CCChhHHHHHHhccCCCCC--CCeEEEEecCCCH
Q psy16310 1153 HV-PRTSEIYIHRSGRTARANN--EGLTLVLIESDEI 1186 (1493)
Q Consensus 1153 d~-p~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~e~ 1186 (1493)
+. --++..|.||+|||||.+- .|.+++++.|...
T Consensus 519 G~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~ 555 (830)
T COG1202 519 GIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKK 555 (830)
T ss_pred ccccCCHHHHHHHhcccCCCCcccCceEEEEecCChh
Confidence 11 2478999999999999964 7999999987643
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=348.38 Aligned_cols=347 Identities=18% Similarity=0.209 Sum_probs=235.5
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
+|. .|+|+|..++| ++..|+ |+.+.||+|||++|.+|++...+
T Consensus 100 lg~-~p~~VQ~~~~~-~ll~G~--Iae~~TGeGKTla~~lp~~~~al--------------------------------- 142 (656)
T PRK12898 100 LGQ-RHFDVQLMGGL-ALLSGR--LAEMQTGEGKTLTATLPAGTAAL--------------------------------- 142 (656)
T ss_pred hCC-CCChHHHHHHH-HHhCCC--eeeeeCCCCcHHHHHHHHHHHhh---------------------------------
Confidence 354 78999999999 455776 99999999999999999997653
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHhC
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 944 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~~ 944 (1493)
.+..++||+||++||.|.++.+..++.++++++++++||.+.. .+.+..++||+|||...| .|.|+.+
T Consensus 143 ---------~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~ 211 (656)
T PRK12898 143 ---------AGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDR 211 (656)
T ss_pred ---------cCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhcccc
Confidence 2457999999999999999999999999999999999998754 344456789999999988 4555433
Q ss_pred cCc----------------------cccccceeEEEecccchhccC-C-----------------ChhHHHHHHHHhccc
Q psy16310 945 HFH----------------------LTELYKINYLVIDETDRMIES-G-----------------HFPELKNILDRVTMT 984 (1493)
Q Consensus 945 ~~~----------------------~~~l~~l~~lVlDEah~ll~~-~-----------------~~~~l~~il~~l~~~ 984 (1493)
... -.....+.+.||||+|.++=+ . ++.....+...+...
T Consensus 212 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~ 291 (656)
T PRK12898 212 LALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEG 291 (656)
T ss_pred ccccccccchhhhhhhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCC
Confidence 211 011345789999999985211 1 111112222211100
Q ss_pred --------------------------------C-C------------------CC-------CceEEEE---------ec
Q psy16310 985 --------------------------------E-T------------------SQ-------PRQTFVF---------SA 997 (1493)
Q Consensus 985 --------------------------------~-~------------------~~-------~~q~ll~---------SA 997 (1493)
. . .. +-.+++. .-
T Consensus 292 ~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr 371 (656)
T PRK12898 292 EDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDR 371 (656)
T ss_pred CceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCC
Confidence 0 0 00 0011111 11
Q ss_pred ccccchHhHHhhhccCcCccc---------------------ccCCC-chhHHHHhHhccCCCcEEecccccccccccee
Q psy16310 998 TLTHSLKNSLNLKKGQSKSKK---------------------VSKGD-PSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 1055 (1493)
Q Consensus 998 Tl~~~~~~~~~~~~~~~~~~~---------------------~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1055 (1493)
+++..+.+.+..+.+...... +.... .....+...+.+. .+.+...........+
T Consensus 372 ~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~---vv~IPt~kp~~r~~~~ 448 (656)
T PRK12898 372 SWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLP---VVRIPTNRPSQRRHLP 448 (656)
T ss_pred CcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCC---eEEeCCCCCccceecC
Confidence 223334444433222111000 00000 1111222222221 2222222222222344
Q ss_pred eEEEecccchhhHHHHHHHhC---CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEE
Q psy16310 1056 SKILCKHDEKDSYLYYFILQH---PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132 (1493)
Q Consensus 1056 ~~~~~~~~~k~~~l~~~l~~~---~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLV 1132 (1493)
.++.+...+|...+...+... +.++||||+|+..++.++..|...|+++..+||++. +|+..+..|+.+...|+|
T Consensus 449 ~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlV 526 (656)
T PRK12898 449 DEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITV 526 (656)
T ss_pred CEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEE
Confidence 456677778888888887653 678999999999999999999999999999999865 455555666666778999
Q ss_pred eehhhhccccCC---Ccc-----EEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCC
Q psy16310 1133 ATDVAARGLDIP---GIE-----HVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185 (1493)
Q Consensus 1133 aTdv~~~GiDip---~v~-----~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e 1185 (1493)
|||+++||+||+ +|. |||+|++|.+...|+||+|||||.|.+|.+++|++..|
T Consensus 527 ATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 527 ATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred EccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 999999999999 776 99999999999999999999999999999999998755
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=363.47 Aligned_cols=306 Identities=21% Similarity=0.241 Sum_probs=216.1
Q ss_pred hhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEE
Q psy16310 184 SALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 263 (1493)
Q Consensus 184 ~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL 263 (1493)
.++..++++|++|+||||||.+|.+++++... .+.+++
T Consensus 12 ~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------------------------------------------~~~~il 49 (819)
T TIGR01970 12 DALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------------------------------------------IGGKII 49 (819)
T ss_pred HHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------------------------------------------cCCeEE
Confidence 36677889999999999999999999986541 124799
Q ss_pred EEcccHHHHHHHHHHHH-HhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEE
Q psy16310 264 ILAPTRELAIQVQNHIL-DAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVI 342 (1493)
Q Consensus 264 iL~PTreLa~Qi~~~~~-~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lVi 342 (1493)
|+.|||++|.|+++.+. .++...+..|+..+++.. ......+|+|+|||+|++++..+. .|+++++|||
T Consensus 50 vlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d~----~L~~v~~VIi 119 (819)
T TIGR01970 50 MLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDDP----ELDGVGALIF 119 (819)
T ss_pred EEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhCc----ccccCCEEEE
Confidence 99999999999999874 555555666666655432 223456999999999999987632 3678999999
Q ss_pred ecCch-hhhcCChhh-HHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 343 DETDR-MIESGHFPE-LKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 343 DEAh~-ll~~~~~~~-l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
||||. +++..+.-. +..+...+ ....|+++||||++......
T Consensus 120 DEaHER~L~~Dl~L~ll~~i~~~l---------------------------------r~dlqlIlmSATl~~~~l~~--- 163 (819)
T TIGR01970 120 DEFHERSLDADLGLALALDVQSSL---------------------------------REDLKILAMSATLDGERLSS--- 163 (819)
T ss_pred eccchhhhccchHHHHHHHHHHhc---------------------------------CCCceEEEEeCCCCHHHHHH---
Confidence 99994 666554322 22222222 34579999999998543110
Q ss_pred hccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhh
Q psy16310 421 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLL 500 (1493)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1493)
++. ....+...+.. ..+...+... ......
T Consensus 164 ----------------------~l~--~~~vI~~~gr~---~pVe~~y~~~---------------~~~~~~-------- 193 (819)
T TIGR01970 164 ----------------------LLP--DAPVVESEGRS---FPVEIRYLPL---------------RGDQRL-------- 193 (819)
T ss_pred ----------------------HcC--CCcEEEecCcc---eeeeeEEeec---------------chhhhH--------
Confidence 000 00000000000 0000000000 000000
Q ss_pred hccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHh---cCCCccccccC
Q psy16310 501 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM---LKCSPLPLHAS 577 (1493)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~---~~~~~~~lhg~ 577 (1493)
.......+...+....+.+||||+++.+++.++..|.. .++.+..+||+
T Consensus 194 ----------------------------~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~ 245 (819)
T TIGR01970 194 ----------------------------EDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGE 245 (819)
T ss_pred ----------------------------HHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCC
Confidence 00001233344445578999999999999999999986 37888999999
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCC------------------hHHHHHHHhccccCC
Q psy16310 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT------------------SEIYIHRSGRTARAN 639 (1493)
Q Consensus 578 ~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s------------------~~~yiQR~GRagR~g 639 (1493)
|++.+|..+++.|++|..+||||||++++|||||+|++||++++|.. -.+|+||+|||||.
T Consensus 246 L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~- 324 (819)
T TIGR01970 246 LSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL- 324 (819)
T ss_pred CCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-
Confidence 99999999999999999999999999999999999999999999853 34699999999999
Q ss_pred CCCeEEEEecCCcchhh
Q psy16310 640 NEGLTVVLIESDEIPLK 656 (1493)
Q Consensus 640 ~~G~~i~l~~~~e~~~~ 656 (1493)
.+|.||.|+++.+...+
T Consensus 325 ~~G~cyrL~t~~~~~~l 341 (819)
T TIGR01970 325 EPGVCYRLWSEEQHQRL 341 (819)
T ss_pred CCCEEEEeCCHHHHHhh
Confidence 69999999998765443
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=345.09 Aligned_cols=352 Identities=16% Similarity=0.221 Sum_probs=241.0
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
+|. .|+++|..+++ ++..|+ |+.+.||+|||++|++|++...+.
T Consensus 75 ~g~-~p~~vQl~~~~-~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~-------------------------------- 118 (790)
T PRK09200 75 LGM-RPYDVQLIGAL-VLHEGN--IAEMQTGEGKTLTATMPLYLNALE-------------------------------- 118 (790)
T ss_pred hCC-CCchHHHHhHH-HHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------------------------------
Confidence 476 89999999998 565664 999999999999999999855432
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHhC
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 944 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~~ 944 (1493)
+..++|++||++||.|.++.+..+..++++++++++||.+...+.+. ...+||++|||++| .|+|...
T Consensus 119 ----------G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~ 187 (790)
T PRK09200 119 ----------GKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDN 187 (790)
T ss_pred ----------CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhc
Confidence 34699999999999999999999999999999999999984333333 34689999999999 5666543
Q ss_pred cC---ccccccceeEEEecccchhccC-C---------------ChhHHHHHHHHhccc---------------------
Q psy16310 945 HF---HLTELYKINYLVIDETDRMIES-G---------------HFPELKNILDRVTMT--------------------- 984 (1493)
Q Consensus 945 ~~---~~~~l~~l~~lVlDEah~ll~~-~---------------~~~~l~~il~~l~~~--------------------- 984 (1493)
.. ....+..+.++|+||||.|+=+ . .+.....++..+...
T Consensus 188 ~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~ 267 (790)
T PRK09200 188 LADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEK 267 (790)
T ss_pred cccchhhhcccccceEEEeccccceeccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHH
Confidence 21 1123567899999999986321 1 111122222221100
Q ss_pred --------C---C-------------------C-------CCceEEEEec---------ccccchHhHHhhhccCcCccc
Q psy16310 985 --------E---T-------------------S-------QPRQTFVFSA---------TLTHSLKNSLNLKKGQSKSKK 1018 (1493)
Q Consensus 985 --------~---~-------------------~-------~~~q~ll~SA---------Tl~~~~~~~~~~~~~~~~~~~ 1018 (1493)
. . . .+-.++++-. +++..+.+.+..+-+......
T Consensus 268 ~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e 347 (790)
T PRK09200 268 AESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEE 347 (790)
T ss_pred HHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCC
Confidence 0 0 0 0011222211 133334444433322111100
Q ss_pred -ccCCCch---hH-HH--------------HhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHh---C
Q psy16310 1019 -VSKGDPS---IK-RL--------------QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ---H 1076 (1493)
Q Consensus 1019 -~~~~~~~---~~-~l--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~ 1076 (1493)
.....-. +- .. .......+-.++.+.........-....+.+...+|...+...+.. .
T Consensus 348 ~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~ 427 (790)
T PRK09200 348 NRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHET 427 (790)
T ss_pred ceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhc
Confidence 0000000 00 00 0111222222333322221111112234556667788888877754 4
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccC---CCcc-----E
Q psy16310 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI---PGIE-----H 1148 (1493)
Q Consensus 1077 ~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDi---p~v~-----~ 1148 (1493)
+.++||||+|+..++.++..|...|+++..+||++.+.++..+...++.| .|+|||++++||+|| |+|. |
T Consensus 428 ~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~ 505 (790)
T PRK09200 428 GRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLA 505 (790)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcE
Confidence 77999999999999999999999999999999999999988888887766 799999999999999 7998 9
Q ss_pred EEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1149 VIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1149 VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
||+|++|.+...|+||+|||||.|.+|.+++|++..|.
T Consensus 506 VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 506 VIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred EEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 99999999999999999999999999999999987653
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=363.20 Aligned_cols=298 Identities=19% Similarity=0.252 Sum_probs=220.8
Q ss_pred HhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEE
Q psy16310 801 SALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880 (1493)
Q Consensus 801 ~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 880 (1493)
.++..+++++++||||||||++|.+|+++... ...+++
T Consensus 15 ~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~------------------------------------------~~~~il 52 (812)
T PRK11664 15 TALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG------------------------------------------INGKII 52 (812)
T ss_pred HHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC------------------------------------------cCCeEE
Confidence 46667889999999999999999999886421 123799
Q ss_pred EEcccHHHHHHHHHHHHH-hhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEe
Q psy16310 881 ILAPTRELAIQVQNHILD-AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVI 959 (1493)
Q Consensus 881 il~PTreLa~Q~~~~~~~-~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVl 959 (1493)
|++|||++|.|+++.+.. ++...+..++..+++.... ....+|+|+|||+|.+++.... .+.++++|||
T Consensus 53 vlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d~----~L~~v~~IIl 122 (812)
T PRK11664 53 MLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV------GPNTRLEVVTEGILTRMIQRDP----ELSGVGLVIL 122 (812)
T ss_pred EECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc------CCCCcEEEEChhHHHHHHhhCC----CcCcCcEEEE
Confidence 999999999999999854 5666778888887765322 2345899999999999887532 4778999999
Q ss_pred cccch-hccCCC-hhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCC
Q psy16310 960 DETDR-MIESGH-FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS 1037 (1493)
Q Consensus 960 DEah~-ll~~~~-~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1037 (1493)
||+|. .++..+ ...+..++..+ +.+.|+++||||++...... . +.+
T Consensus 123 DEaHER~l~~Dl~L~ll~~i~~~l-----r~~lqlilmSATl~~~~l~~---~------------------------~~~ 170 (812)
T PRK11664 123 DEFHERSLQADLALALLLDVQQGL-----RDDLKLLIMSATLDNDRLQQ---L------------------------LPD 170 (812)
T ss_pred cCCCccccccchHHHHHHHHHHhC-----CccceEEEEecCCCHHHHHH---h------------------------cCC
Confidence 99996 444333 12233344433 36789999999998542111 1 011
Q ss_pred CcEEeccccccccccceeeEEEecccchhh-----HHHHHHHhCCCcEEEEecchhhHHHHHHHHHh---cCCCcccccc
Q psy16310 1038 PKIVDLTEKIGITKTLTESKILCKHDEKDS-----YLYYFILQHPGRTLVFCNSISSVKRLTQLLTM---LKCSPLPLHA 1109 (1493)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-----~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~---~~~~~~~lhg 1109 (1493)
...+..... ...+.+.+.......+.. .+...+....+.+||||+++..++.++..|.. .++.+..+||
T Consensus 171 ~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg 247 (812)
T PRK11664 171 APVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYG 247 (812)
T ss_pred CCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeC
Confidence 111211111 112333333333333322 23344445578999999999999999999987 4778899999
Q ss_pred CCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCC------------------ChhHHHHHHhccCCC
Q psy16310 1110 SMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR------------------TSEIYIHRSGRTARA 1171 (1493)
Q Consensus 1110 ~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~------------------s~~~yiqr~GR~gR~ 1171 (1493)
+|++.+|..++..|++|+.+|||||+++++|||||+|++||++++|+ |..+|+||+|||||.
T Consensus 248 ~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~ 327 (812)
T PRK11664 248 ALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL 327 (812)
T ss_pred CCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC
Confidence 99999999999999999999999999999999999999999987764 335899999999998
Q ss_pred CCCCeEEEEecCCCH
Q psy16310 1172 NNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1172 g~~G~~i~l~~~~e~ 1186 (1493)
..|.||.|+++.+.
T Consensus 328 -~~G~cyrL~t~~~~ 341 (812)
T PRK11664 328 -EPGICLHLYSKEQA 341 (812)
T ss_pred -CCcEEEEecCHHHH
Confidence 69999999986543
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=355.35 Aligned_cols=345 Identities=21% Similarity=0.247 Sum_probs=253.0
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHH
Q psy16310 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 853 (1493)
Q Consensus 774 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 853 (1493)
.+++.+.+.+...|+.+..|-|+.++...+.+++|+++|+|||||||+++++.|+..+...
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~------------------- 75 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG------------------- 75 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------------------
Confidence 4778888888889998888888888877777789999999999999999999999887542
Q ss_pred HHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEEC
Q psy16310 854 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933 (1493)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~T 933 (1493)
+.+++||||+++||.|.++.|+ ....+|++|...+|+....... + .+++|+|+|
T Consensus 76 ----------------------~~k~vYivPlkALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~~--l-~~~~ViVtT 129 (766)
T COG1204 76 ----------------------GGKVVYIVPLKALAEEKYEEFS-RLEELGIRVGISTGDYDLDDER--L-ARYDVIVTT 129 (766)
T ss_pred ----------------------CCcEEEEeChHHHHHHHHHHhh-hHHhcCCEEEEecCCcccchhh--h-ccCCEEEEc
Confidence 3469999999999999999999 4457889999999998755522 1 357999999
Q ss_pred cHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch--HhHHhhhc
Q psy16310 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL--KNSLNLKK 1011 (1493)
Q Consensus 934 P~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~--~~~~~~~~ 1011 (1493)
|+++-.++++... .+..+++||+||+|.+.+...++.++.|+.++... ....|++++|||+|+.. ..++....
T Consensus 130 ~EK~Dsl~R~~~~---~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~--~~~~rivgLSATlpN~~evA~wL~a~~ 204 (766)
T COG1204 130 PEKLDSLTRKRPS---WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRL--NELIRIVGLSATLPNAEEVADWLNAKL 204 (766)
T ss_pred hHHhhHhhhcCcc---hhhcccEEEEeeeeecCCcccCceehhHHHHHHhh--CcceEEEEEeeecCCHHHHHHHhCCcc
Confidence 9998777765543 46689999999999887777889999999887543 23479999999999643 22321110
Q ss_pred cCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHH
Q psy16310 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVK 1091 (1493)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~ 1091 (1493)
. .......+ + .-..+....+........ .......+....+.......++++||||+|++.+.
T Consensus 205 ~----~~~~rp~~----l----~~~v~~~~~~~~~~~~~k-----~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~ 267 (766)
T COG1204 205 V----ESDWRPVP----L----RRGVPYVGAFLGADGKKK-----TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAE 267 (766)
T ss_pred c----ccCCCCcc----c----ccCCccceEEEEecCccc-----cccccchHHHHHHHHHHHhcCCeEEEEEecCchHH
Confidence 0 00000000 0 000000000000000000 00011122333334444566899999999999999
Q ss_pred HHHHHHHhc-------------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCCeEEee
Q psy16310 1092 RLTQLLTML-------------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134 (1493)
Q Consensus 1092 ~l~~~L~~~-------------------------------------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaT 1134 (1493)
..+..|... -.++..||++|+..+|..+.+.|+.|.++|||||
T Consensus 268 ~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~T 347 (766)
T COG1204 268 KTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVST 347 (766)
T ss_pred HHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEec
Confidence 998888621 1346779999999999999999999999999999
Q ss_pred hhhhccccCCCccEEE----Eec-----CCCChhHHHHHHhccCCCCC--CCeEEEEecCCC
Q psy16310 1135 DVAARGLDIPGIEHVI----HYH-----VPRTSEIYIHRSGRTARANN--EGLTLVLIESDE 1185 (1493)
Q Consensus 1135 dv~~~GiDip~v~~VI----~~d-----~p~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~e 1185 (1493)
+++++|+|+|.-.+|| .|+ .+-+.-+|+|++|||||.|- .|.++++.+..+
T Consensus 348 pTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~ 409 (766)
T COG1204 348 PTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHD 409 (766)
T ss_pred hHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCcc
Confidence 9999999999988888 367 56678899999999999974 688888884443
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=356.41 Aligned_cols=347 Identities=21% Similarity=0.241 Sum_probs=254.1
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHH
Q psy16310 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 236 (1493)
Q Consensus 157 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (1493)
.+++.+...+...|+..+++-|+.++...+.+++|+|+|+|||||||+++.+.+++.+.+
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~-------------------- 74 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE-------------------- 74 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh--------------------
Confidence 477888888888999999999999998888888999999999999999999999988853
Q ss_pred HHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeC
Q psy16310 237 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316 (1493)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~T 316 (1493)
.+.++|++||+++||.|.++.|.. ...+|++|...+|+......+ ..+++|||+|
T Consensus 75 ---------------------~~~k~vYivPlkALa~Ek~~~~~~-~~~~GirV~~~TgD~~~~~~~---l~~~~ViVtT 129 (766)
T COG1204 75 ---------------------GGGKVVYIVPLKALAEEKYEEFSR-LEELGIRVGISTGDYDLDDER---LARYDVIVTT 129 (766)
T ss_pred ---------------------cCCcEEEEeChHHHHHHHHHHhhh-HHhcCCEEEEecCCcccchhh---hccCCEEEEc
Confidence 145799999999999999999994 345799999999998765532 2457999999
Q ss_pred cHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccC
Q psy16310 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTE 396 (1493)
Q Consensus 317 P~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1493)
|+++-.++.+... .+..+++|||||+|.+.+..+++.++.|+.++...
T Consensus 130 ~EK~Dsl~R~~~~---~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~----------------------------- 177 (766)
T COG1204 130 PEKLDSLTRKRPS---WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRL----------------------------- 177 (766)
T ss_pred hHHhhHhhhcCcc---hhhcccEEEEeeeeecCCcccCceehhHHHHHHhh-----------------------------
Confidence 9998777765544 45589999999999887777999999999877543
Q ss_pred CCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCc
Q psy16310 397 TSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK 476 (1493)
Q Consensus 397 ~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1493)
....|++++|||+|+.. .+.+|++...... .+...-..........+...
T Consensus 178 -~~~~rivgLSATlpN~~------------------------evA~wL~a~~~~~-~~rp~~l~~~v~~~~~~~~~---- 227 (766)
T COG1204 178 -NELIRIVGLSATLPNAE------------------------EVADWLNAKLVES-DWRPVPLRRGVPYVGAFLGA---- 227 (766)
T ss_pred -CcceEEEEEeeecCCHH------------------------HHHHHhCCccccc-CCCCcccccCCccceEEEEe----
Confidence 33479999999998642 3334443221100 00000000000000000000
Q ss_pred chhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhh
Q psy16310 477 DSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 556 (1493)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~ 556 (1493)
.. .........+.....+.......++++||||+||..
T Consensus 228 -------------------------------------~~-----~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~ 265 (766)
T COG1204 228 -------------------------------------DG-----KKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKE 265 (766)
T ss_pred -------------------------------------cC-----ccccccccchHHHHHHHHHHHhcCCeEEEEEecCch
Confidence 00 000000011112222223334457899999999999
Q ss_pred HHHHHHHHHh-------------------------------------cCCCccccccCCCHHHHHHHHHHHhcCCCeEEE
Q psy16310 557 VKRLTQLLTM-------------------------------------LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 599 (1493)
Q Consensus 557 a~~L~~~L~~-------------------------------------~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLV 599 (1493)
+...++.|.. ...+++.||++|+..+|.-+.+.|+.|.++|||
T Consensus 266 a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv 345 (766)
T COG1204 266 AEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLV 345 (766)
T ss_pred HHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEE
Confidence 9998888852 024567799999999999999999999999999
Q ss_pred EechhhccCCCCCCcEEE----Eec-----CCCChHHHHHHHhccccCCCC--CeEEEEecCCc
Q psy16310 600 ATDVAARGLDIPGIEHVI----HYH-----VPRTSEIYIHRSGRTARANNE--GLTVVLIESDE 652 (1493)
Q Consensus 600 aTdv~~rGlDip~v~~VI----~yd-----~P~s~~~yiQR~GRagR~g~~--G~~i~l~~~~e 652 (1493)
||+++++|+|+|.-.+|| .|| .+.++.+|+|+.|||||.|-. |.++++.+..+
T Consensus 346 ~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~ 409 (766)
T COG1204 346 STPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHD 409 (766)
T ss_pred echHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCcc
Confidence 999999999999877777 588 678899999999999998765 78888874433
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=351.03 Aligned_cols=324 Identities=17% Similarity=0.188 Sum_probs=221.6
Q ss_pred CCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcch
Q psy16310 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 867 (1493)
Q Consensus 788 ~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1493)
...|+++|.++++.++ .+.+.++++|||+|||+++...+ ..+..
T Consensus 112 ~~~~r~~Q~~av~~~l-~~~~~il~apTGsGKT~i~~~l~-~~~~~---------------------------------- 155 (501)
T PHA02558 112 KIEPHWYQYDAVYEGL-KNNRRLLNLPTSAGKSLIQYLLS-RYYLE---------------------------------- 155 (501)
T ss_pred cCCCCHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHH-HHHHh----------------------------------
Confidence 4689999999998666 56789999999999999865432 22111
Q ss_pred hhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCc
Q psy16310 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947 (1493)
Q Consensus 868 ~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~ 947 (1493)
....++||||||++|+.|+.+.+..++......+..+.||.... ...+|+|+||+++.+...
T Consensus 156 ------~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~----- 217 (501)
T PHA02558 156 ------NYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK----- 217 (501)
T ss_pred ------cCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh-----
Confidence 12237999999999999999999998755555666677765432 346899999999875432
Q ss_pred cccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhh--hccCcCcccccCCCch
Q psy16310 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL--KKGQSKSKKVSKGDPS 1025 (1493)
Q Consensus 948 ~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~--~~~~~~~~~~~~~~~~ 1025 (1493)
..+.++++||+||||++... .+..++..+ +..+++++||||+.+........ ..+... .. ..
T Consensus 218 -~~~~~~~~iIvDEaH~~~~~----~~~~il~~~-----~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~-~~-----v~ 281 (501)
T PHA02558 218 -EWFDQFGMVIVDECHLFTGK----SLTSIITKL-----DNCKFKFGLTGSLRDGKANILQYVGLFGDIF-KP-----VT 281 (501)
T ss_pred -hhccccCEEEEEchhcccch----hHHHHHHhh-----hccceEEEEeccCCCccccHHHHHHhhCCce-EE-----ec
Confidence 13567899999999998763 456666655 24578999999997543221110 111000 00 01
Q ss_pred hHHHHhHhccCCCcEEeccccccc--cccc-----ee-eEEEecccchhhHHHHHH---HhCCCcEEEEecchhhHHHHH
Q psy16310 1026 IKRLQDLLNIKSPKIVDLTEKIGI--TKTL-----TE-SKILCKHDEKDSYLYYFI---LQHPGRTLVFCNSISSVKRLT 1094 (1493)
Q Consensus 1026 ~~~l~~~~~~~~~~~~~~~~~~~~--~~~~-----~~-~~~~~~~~~k~~~l~~~l---~~~~~~~IVF~~s~~~~~~l~ 1094 (1493)
...+...-.+..+.+..+...... .... .. ....+....+...+...+ ...+.+++|||+++++++.|+
T Consensus 282 ~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~ 361 (501)
T PHA02558 282 TSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLY 361 (501)
T ss_pred HHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHH
Confidence 111111111111111110000000 0000 00 001122223333333322 334678999999999999999
Q ss_pred HHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEee-hhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCC
Q psy16310 1095 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT-DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173 (1493)
Q Consensus 1095 ~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaT-dv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~ 1173 (1493)
+.|...|.++..+||+|++.+|..+++.|+.|+..||||| +++++|+|+|++++||++++|.+...|+||+||++|.+.
T Consensus 362 ~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~ 441 (501)
T PHA02558 362 EMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHG 441 (501)
T ss_pred HHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCC
Confidence 9999999999999999999999999999999999999999 899999999999999999999999999999999999976
Q ss_pred CCeEEEEe
Q psy16310 1174 EGLTLVLI 1181 (1493)
Q Consensus 1174 ~G~~i~l~ 1181 (1493)
.+...+++
T Consensus 442 ~K~~~~i~ 449 (501)
T PHA02558 442 SKSIATVW 449 (501)
T ss_pred CCceEEEE
Confidence 55444443
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=319.02 Aligned_cols=341 Identities=22% Similarity=0.254 Sum_probs=260.2
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccc
Q psy16310 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 231 (1493)
...++.|++.+.+.|+..|++.+.|+|..++..-|..|.|++|+++|+||||++.-|.-+..++.
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--------------- 259 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--------------- 259 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh---------------
Confidence 45689999999999999999999999999999999999999999999999999988887766643
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHH----HHhc
Q psy16310 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL----RILN 307 (1493)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~----~~l~ 307 (1493)
.+.+.|||+|..+||+|-++.|.+-...+++.+.+-+|........ ....
T Consensus 260 --------------------------~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~ 313 (830)
T COG1202 260 --------------------------GGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTS 313 (830)
T ss_pred --------------------------CCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCC
Confidence 4567999999999999999999988888999999998875443332 1122
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
..+||||+|.+.+-.+|..+ ..+.++..+||||.|.+-+..+++.+..++.++...
T Consensus 314 ~dADIIVGTYEGiD~lLRtg----~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l-------------------- 369 (830)
T COG1202 314 PDADIIVGTYEGIDYLLRTG----KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYL-------------------- 369 (830)
T ss_pred CCCcEEEeechhHHHHHHcC----CcccccceEEeeeeeeccchhcccchhhHHHHHHHh--------------------
Confidence 34799999999987777765 235689999999999887778888888888887543
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 467 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1493)
.+..|+|.+|||+.+...- ...++. ..+.+ -..+..+..+
T Consensus 370 ----------~~~AQ~i~LSATVgNp~el------------------------A~~l~a---~lV~y---~~RPVplErH 409 (830)
T COG1202 370 ----------FPGAQFIYLSATVGNPEEL------------------------AKKLGA---KLVLY---DERPVPLERH 409 (830)
T ss_pred ----------CCCCeEEEEEeecCChHHH------------------------HHHhCC---eeEee---cCCCCChhHe
Confidence 3457999999999654221 111100 00000 0000111111
Q ss_pred hhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHH-------
Q psy16310 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI------- 540 (1493)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l------- 540 (1493)
.+++.. ...|...+..+.
T Consensus 410 lvf~~~-------------------------------------------------------e~eK~~ii~~L~k~E~~~~ 434 (830)
T COG1202 410 LVFARN-------------------------------------------------------ESEKWDIIARLVKREFSTE 434 (830)
T ss_pred eeeecC-------------------------------------------------------chHHHHHHHHHHHHHHhhh
Confidence 111111 122222222222
Q ss_pred --hhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE
Q psy16310 541 --LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618 (1493)
Q Consensus 541 --~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~ 618 (1493)
..+.|++|||++||..|+.|+..|...|+.+.++|++|+..+|..+...|..+++.++|+|..++-|+|+|.-.+|+-
T Consensus 435 sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFE 514 (830)
T COG1202 435 SSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFE 514 (830)
T ss_pred hccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHH
Confidence 123589999999999999999999999999999999999999999999999999999999999999999997554431
Q ss_pred ---ecC-CCChHHHHHHHhccccCCC--CCeEEEEecCCc
Q psy16310 619 ---YHV-PRTSEIYIHRSGRTARANN--EGLTVVLIESDE 652 (1493)
Q Consensus 619 ---yd~-P~s~~~yiQR~GRagR~g~--~G~~i~l~~~~e 652 (1493)
.+. =.|+.+|.|+.|||||.+- .|.+|+++.+.-
T Consensus 515 sLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 515 SLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred HHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 111 1579999999999999765 499999998754
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=360.54 Aligned_cols=305 Identities=19% Similarity=0.243 Sum_probs=213.7
Q ss_pred hhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEE
Q psy16310 184 SALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 263 (1493)
Q Consensus 184 ~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL 263 (1493)
.++.+++++|++||||||||.+|.+++++.. ....+++
T Consensus 15 ~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~------------------------------------------~~~~~il 52 (812)
T PRK11664 15 TALKTAPQVLLKAPTGAGKSTWLPLQLLQHG------------------------------------------GINGKII 52 (812)
T ss_pred HHHHhCCCEEEEcCCCCCHHHHHHHHHHHcC------------------------------------------CcCCeEE
Confidence 4667788999999999999999999988532 1123799
Q ss_pred EEcccHHHHHHHHHHHH-HhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEE
Q psy16310 264 ILAPTRELAIQVQNHIL-DAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVI 342 (1493)
Q Consensus 264 iL~PTreLa~Qi~~~~~-~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lVi 342 (1493)
|++|||++|.|+++.+. .++...+..++..+++.... ....+|+|+|||+|++++..+. .|+++++|||
T Consensus 53 vlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d~----~L~~v~~IIl 122 (812)
T PRK11664 53 MLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV------GPNTRLEVVTEGILTRMIQRDP----ELSGVGLVIL 122 (812)
T ss_pred EECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc------CCCCcEEEEChhHHHHHHhhCC----CcCcCcEEEE
Confidence 99999999999999884 45566677888777764321 2345899999999999987532 3678999999
Q ss_pred ecCch-hhhcCCh-hhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 343 DETDR-MIESGHF-PELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 343 DEAh~-ll~~~~~-~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
||||. .++..+. ..+..++..+ ....|+++||||++..... .
T Consensus 123 DEaHER~l~~Dl~L~ll~~i~~~l---------------------------------r~~lqlilmSATl~~~~l~--~- 166 (812)
T PRK11664 123 DEFHERSLQADLALALLLDVQQGL---------------------------------RDDLKLLIMSATLDNDRLQ--Q- 166 (812)
T ss_pred cCCCccccccchHHHHHHHHHHhC---------------------------------CccceEEEEecCCCHHHHH--H-
Confidence 99997 3332221 1122222222 3457999999999754211 0
Q ss_pred hccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhh
Q psy16310 421 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLL 500 (1493)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1493)
++. ....+...+. ...+...+.... ......
T Consensus 167 ----------------------~~~--~~~~I~~~gr---~~pV~~~y~~~~---------------~~~~~~------- 197 (812)
T PRK11664 167 ----------------------LLP--DAPVIVSEGR---SFPVERRYQPLP---------------AHQRFD------- 197 (812)
T ss_pred ----------------------hcC--CCCEEEecCc---cccceEEeccCc---------------hhhhHH-------
Confidence 000 0000000000 000000000000 000000
Q ss_pred hccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHh---cCCCccccccC
Q psy16310 501 NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM---LKCSPLPLHAS 577 (1493)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~---~~~~~~~lhg~ 577 (1493)
..-...+...+....+.+||||+++.+++.+++.|.. .++.+..+||+
T Consensus 198 -----------------------------~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~ 248 (812)
T PRK11664 198 -----------------------------EAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGA 248 (812)
T ss_pred -----------------------------HHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCC
Confidence 0001123344445578999999999999999999986 47788999999
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCC------------------hHHHHHHHhccccCC
Q psy16310 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT------------------SEIYIHRSGRTARAN 639 (1493)
Q Consensus 578 ~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s------------------~~~yiQR~GRagR~g 639 (1493)
|++.+|..++..|++|+.+||||||++++|||||+|++||++++|.. -.+|+||+|||||.
T Consensus 249 l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~- 327 (812)
T PRK11664 249 LSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL- 327 (812)
T ss_pred CCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-
Confidence 99999999999999999999999999999999999999999887643 35799999999998
Q ss_pred CCCeEEEEecCCcchh
Q psy16310 640 NEGLTVVLIESDEIPL 655 (1493)
Q Consensus 640 ~~G~~i~l~~~~e~~~ 655 (1493)
.+|.||.||++.+...
T Consensus 328 ~~G~cyrL~t~~~~~~ 343 (812)
T PRK11664 328 EPGICLHLYSKEQAER 343 (812)
T ss_pred CCcEEEEecCHHHHhh
Confidence 5999999999876543
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=341.81 Aligned_cols=406 Identities=18% Similarity=0.173 Sum_probs=242.6
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
.|. .|+++|..++| +++.|+ |+.+.||+|||++|++|++....
T Consensus 100 lg~-~p~~VQ~~~~~-~ll~G~--Iae~~TGeGKTla~~lp~~~~al--------------------------------- 142 (656)
T PRK12898 100 LGQ-RHFDVQLMGGL-ALLSGR--LAEMQTGEGKTLTATLPAGTAAL--------------------------------- 142 (656)
T ss_pred hCC-CCChHHHHHHH-HHhCCC--eeeeeCCCCcHHHHHHHHHHHhh---------------------------------
Confidence 355 69999999998 566776 99999999999999999986542
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~~ 327 (1493)
.++.|+||+||++||.|.+.++..+..++++++++++|+++.. ......++||+|+|..-| .|.|...
T Consensus 143 ---------~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~ 211 (656)
T PRK12898 143 ---------AGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDR 211 (656)
T ss_pred ---------cCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhcccc
Confidence 3457999999999999999999999999999999999998754 334445789999999887 4555432
Q ss_pred Ccc----------------------ccccccccEEEEecCchhhhc-CChh-----------------hHHHHHHhhccc
Q psy16310 328 HFH----------------------LTELYKINYLVIDETDRMIES-GHFP-----------------ELKNILDRVTMT 367 (1493)
Q Consensus 328 ~~~----------------------~~~l~~i~~lViDEAh~ll~~-~~~~-----------------~l~~il~~l~~~ 367 (1493)
... ......+.+.||||||.+|=+ ...+ +...+...+...
T Consensus 212 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~ 291 (656)
T PRK12898 212 LALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEG 291 (656)
T ss_pred ccccccccchhhhhhhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCC
Confidence 110 011345789999999997622 1111 111111111100
Q ss_pred cCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhh---
Q psy16310 368 ETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL--- 444 (1493)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 444 (1493)
.+ +. .....+.+.++..-...+..++.... . ...........+...+
T Consensus 292 ------------~~----------y~---~d~~~~~v~lt~~g~~~~e~~~~~l~---~--~~~~~~~~~~~i~~Al~A~ 341 (656)
T PRK12898 292 ------------ED----------YT---IDAAEKRIELTEAGRARIAELAESLP---P--AWRGAVRREELVRQALSAL 341 (656)
T ss_pred ------------Cc----------eE---EECCCCeEEEcHHHHHHHHHHhCcch---h--hcccchHHHHHHHHHHHHH
Confidence 00 00 01122333333222122222211100 0 0000000000000000
Q ss_pred ---hccCCcc------cc---hhhhhccccccc----hh------hhhhccCC---cchhh----HHHHhcCCCcchhhH
Q psy16310 445 ---NIKSPKI------VD---LTEKIGITKTLT----ES------KILCKHDE---KDSYL----YYFILQHPGRTLCEE 495 (1493)
Q Consensus 445 ---~~~~~~~------~~---~~~~~~~~~~~~----~~------~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~ 495 (1493)
.....++ .- .++.......+. +. ..+..... .-.+. .|.-...-..+....
T Consensus 342 ~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~ 421 (656)
T PRK12898 342 HLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREV 421 (656)
T ss_pred HHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHH
Confidence 0000000 00 000000000000 00 00000000 00011 111111112222222
Q ss_pred HHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC---CCcEEEEecchhhHHHHHHHHHhcCCCcc
Q psy16310 496 IQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH---PGRTLVFCNSISSVKRLTQLLTMLKCSPL 572 (1493)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~IIF~~s~~~a~~L~~~L~~~~~~~~ 572 (1493)
...+...+.-.+..+..............+.+....|...+...+... +.++||||+|+..++.++..|...|+.+.
T Consensus 422 ~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~ 501 (656)
T PRK12898 422 AGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQ 501 (656)
T ss_pred HHHHHHHHCCCeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEE
Confidence 233333333223222222222222333456666677888888888653 57899999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCC---CCc-----EEEEecCCCChHHHHHHHhccccCCCCCeE
Q psy16310 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP---GIE-----HVIHYHVPRTSEIYIHRSGRTARANNEGLT 644 (1493)
Q Consensus 573 ~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip---~v~-----~VI~yd~P~s~~~yiQR~GRagR~g~~G~~ 644 (1493)
.+||.+. +|...+..|+.+...|+||||+++||+||+ +|. +||+||+|.|...|+||+|||||.|.+|.|
T Consensus 502 ~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s 579 (656)
T PRK12898 502 VLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSY 579 (656)
T ss_pred EeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEE
Confidence 9999865 555566667777778999999999999999 776 999999999999999999999999999999
Q ss_pred EEEecCCcch
Q psy16310 645 VVLIESDEIP 654 (1493)
Q Consensus 645 i~l~~~~e~~ 654 (1493)
++|++.+|.-
T Consensus 580 ~~~is~eD~l 589 (656)
T PRK12898 580 EAILSLEDDL 589 (656)
T ss_pred EEEechhHHH
Confidence 9999986633
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=379.57 Aligned_cols=352 Identities=15% Similarity=0.134 Sum_probs=238.3
Q ss_pred HHHHHHHH-CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHH
Q psy16310 161 TIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 239 (1493)
Q Consensus 161 ~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1493)
.+.+.+.+ .|| .|+++|.+++|. +..|+|++++||||||||++++++++...
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~-il~G~d~li~APTGsGKTl~~~~~al~~~------------------------- 119 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKR-ILRGKSFSIVAPTGMGKSTFGAFIALFLA------------------------- 119 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHH-HHcCCCEEEEEcCCCCHHHHHHHHHHHHH-------------------------
Confidence 34555655 799 699999999995 55789999999999999996666554321
Q ss_pred HHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC--CeEEEEEEcCCCHHHHHH---HhcC-CCCEE
Q psy16310 240 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT--PVKVACVVGGMSTEKQLR---ILNK-CPHIL 313 (1493)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~--~i~v~~~~G~~~~~~~~~---~l~~-~~~Ii 313 (1493)
..+.++|||+||++||.|+++.+..++... ++.+..++|+.+...+.. .+.. .++|+
T Consensus 120 -----------------~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dIL 182 (1638)
T PRK14701 120 -----------------LKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDIL 182 (1638)
T ss_pred -----------------hcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEE
Confidence 134579999999999999999999987764 467788899988776533 3433 48999
Q ss_pred EeCcHHHHHHHHcCCccccccccccEEEEecCchhhh-----------cCChhhHHH-HHHhhccccCCCccccccccCC
Q psy16310 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-----------SGHFPELKN-ILDRVTMTETSQPRQTMIESGH 381 (1493)
Q Consensus 314 V~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-----------~~~~~~l~~-il~~l~~~~~~~~~~~~~~~~~ 381 (1493)
|+||++|.+.+... . ..++++|||||||+|++ ++|.+.+.. +++.+......... ..
T Consensus 183 V~TPgrL~~~~~~l----~-~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~------~~ 251 (1638)
T PRK14701 183 VTTAQFLARNFPEM----K-HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIE------DA 251 (1638)
T ss_pred EECCchhHHhHHHH----h-hCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccc------hh
Confidence 99999998876531 1 14689999999999987 477777654 22222110000000 00
Q ss_pred cchhhhhhhhccccCCCCCce-EEEEeeccchh--hhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhh
Q psy16310 382 FPELKNILDRVTMTETSQPRQ-TFVFSATLTHS--LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI 458 (1493)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~q-~il~SATl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (1493)
...+..+.... ...+...| ++++|||+++. ...+++ + +..+..
T Consensus 252 ~~~~~~l~~~~--~~~~~~~~~ll~~SAT~~~r~~~~~l~~----------------------~------~l~f~v---- 297 (1638)
T PRK14701 252 MEKREILNKEI--EKIGNKIGCLIVASATGKAKGDRVKLYR----------------------E------LLGFEV---- 297 (1638)
T ss_pred hhhhhhhhhhh--hhcCCCccEEEEEecCCCchhHHHHHhh----------------------c------CeEEEe----
Confidence 00011111111 11133344 67899999852 111110 0 000000
Q ss_pred ccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHH
Q psy16310 459 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 538 (1493)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 538 (1493)
.........+.+.++.+....+ ..+..
T Consensus 298 ----------------------------------------------------~~~~~~lr~i~~~yi~~~~~~k-~~L~~ 324 (1638)
T PRK14701 298 ----------------------------------------------------GSGRSALRNIVDVYLNPEKIIK-EHVRE 324 (1638)
T ss_pred ----------------------------------------------------cCCCCCCCCcEEEEEECCHHHH-HHHHH
Confidence 0000000111112222222222 34556
Q ss_pred HHhhCCCcEEEEecchhh---HHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEe----chhhccCCCC
Q psy16310 539 FILQHPGRTLVFCNSISS---VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT----DVAARGLDIP 611 (1493)
Q Consensus 539 ~l~~~~~~~IIF~~s~~~---a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaT----dv~~rGlDip 611 (1493)
++...+.++||||+++.. |+.++..|...|+.+..+||+ |..+++.|++|+++||||| ++++||||+|
T Consensus 325 ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP 399 (1638)
T PRK14701 325 LLKKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLP 399 (1638)
T ss_pred HHHhCCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccC
Confidence 666667789999999886 489999999999999999995 8899999999999999999 5999999999
Q ss_pred C-CcEEEEecCCC---ChHHHHHHH-------------hccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 612 G-IEHVIHYHVPR---TSEIYIHRS-------------GRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 612 ~-v~~VI~yd~P~---s~~~yiQR~-------------GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
+ |++|||||+|. ++..|.|.. ||+||.|.++.+++.+...++.....+
T Consensus 400 ~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 464 (1638)
T PRK14701 400 ERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSI 464 (1638)
T ss_pred CccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHH
Confidence 9 99999999999 888777765 999999998888866665555554444
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=348.88 Aligned_cols=406 Identities=15% Similarity=0.193 Sum_probs=246.9
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
.|. .|+++|..+++ ++..|+ |+.+.||+|||++|++|++...+
T Consensus 75 ~g~-~p~~vQl~~~~-~l~~G~--Iaem~TGeGKTL~a~lp~~l~al--------------------------------- 117 (790)
T PRK09200 75 LGM-RPYDVQLIGAL-VLHEGN--IAEMQTGEGKTLTATMPLYLNAL--------------------------------- 117 (790)
T ss_pred hCC-CCchHHHHhHH-HHcCCc--eeeecCCCcchHHHHHHHHHHHH---------------------------------
Confidence 366 79999999998 665654 99999999999999999984442
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~~ 327 (1493)
.+..|+|++||++||.|.+.++..+...+|+++++++|+.+...+.... ..+||+++||++| .++|...
T Consensus 118 ---------~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~-y~~dIvygT~~~l~fDyLrd~ 187 (790)
T PRK09200 118 ---------EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAI-YEADIIYTTNSELGFDYLRDN 187 (790)
T ss_pred ---------cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHh-cCCCEEEECCccccchhHHhc
Confidence 3456999999999999999999999999999999999998843333333 4589999999999 5655432
Q ss_pred Cc---cccccccccEEEEecCchhhhcC-Chh---------------hHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 328 HF---HLTELYKINYLVIDETDRMIESG-HFP---------------ELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 328 ~~---~~~~l~~i~~lViDEAh~ll~~~-~~~---------------~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
.. ....+..+.++||||||.|+=.. ..+ .+..+...+....
T Consensus 188 ~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~-------------------- 247 (790)
T PRK09200 188 LADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDV-------------------- 247 (790)
T ss_pred cccchhhhcccccceEEEeccccceeccCCCceeeeCCCccccHHHHHHHHHHHhcccCC--------------------
Confidence 11 11235678999999999987321 111 1111111110000
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchh-hhHHhhh------hccC------Ccccch-
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI-KRLQDLL------NIKS------PKIVDL- 454 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~------~~~~~~- 454 (1493)
.+.. ... .+.+.++..--..+..++.+. . ......... ..+...+ .... ..+.-+
T Consensus 248 --dy~~--d~~-~~~~~lt~~g~~~~e~~~~i~----~--l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD 316 (790)
T PRK09200 248 --DYEF--DEE-KKEVWLTDQGIEKAESYFGID----N--LYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVD 316 (790)
T ss_pred --CeEE--ecC-CCeEEecHhHHHHHHHhcCCc----c--ccChhhhHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEEE
Confidence 0000 011 122222211111111111000 0 000000000 0000000 0000 000000
Q ss_pred --hhhhccccccc----h------hhhhhccCCc---ch----hhHHHHhcCCCcchhhHHHhhhhccCCcccccccccc
Q psy16310 455 --TEKIGITKTLT----E------SKILCKHDEK---DS----YLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515 (1493)
Q Consensus 455 --~~~~~~~~~~~----~------~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1493)
++.......+. + ...+...... -. +..|.-...-..+.......+...+.-.+........
T Consensus 317 ~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt~kp 396 (790)
T PRK09200 317 RFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRP 396 (790)
T ss_pred CCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcEEECCCCCC
Confidence 00000000000 0 0000000000 00 0011111111122222223444444444444333333
Q ss_pred ccccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhc
Q psy16310 516 ITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 592 (1493)
Q Consensus 516 ~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~ 592 (1493)
.........+.+....|...+...+.. .+.++||||+|+..++.++..|...|+++..+||.+.+.++..+...++.
T Consensus 397 ~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~ 476 (790)
T PRK09200 397 IIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK 476 (790)
T ss_pred cccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC
Confidence 222223344556667788888887754 46799999999999999999999999999999999999888888888776
Q ss_pred CCCeEEEEechhhccCCC---CCCc-----EEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcch
Q psy16310 593 QNNSILLATDVAARGLDI---PGIE-----HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 593 g~~~VLVaTdv~~rGlDi---p~v~-----~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~ 654 (1493)
| .|+|||++|+||+|| |+|. +||+|++|.+...|+||+|||||.|.+|.|++|++.+|.-
T Consensus 477 g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l 544 (790)
T PRK09200 477 G--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDL 544 (790)
T ss_pred C--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHH
Confidence 6 799999999999999 7999 9999999999999999999999999999999999886643
|
|
| >KOG0352|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=304.90 Aligned_cols=336 Identities=18% Similarity=0.268 Sum_probs=248.4
Q ss_pred HHHHHHH-CCCCCC-cHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHH
Q psy16310 779 IIRALYQ-KGFKTP-TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 856 (1493)
Q Consensus 779 l~~~l~~-~g~~~p-t~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (1493)
+.++|++ +|+..+ ++.|++|+..++...+||.+++|||+||+|||.||.|-+
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-------------------------- 60 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-------------------------- 60 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--------------------------
Confidence 4455554 577665 899999999888888999999999999999999998731
Q ss_pred HHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHh------cCCCcEE
Q psy16310 857 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL------NKCPHIL 930 (1493)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l------~~~~~Il 930 (1493)
+..+||+.|..+|+..+.+++..+- +++..+.+-++..+..+.+ +....++
T Consensus 61 -------------------~gITIV~SPLiALIkDQiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~L 117 (641)
T KOG0352|consen 61 -------------------GGITIVISPLIALIKDQIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKML 117 (641)
T ss_pred -------------------CCeEEEehHHHHHHHHHHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEE
Confidence 2279999999999999999998764 6666677766665554433 2245799
Q ss_pred EECcHHHH-----HHHHhCcCccccccceeEEEecccchhccCCC--hhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 931 VATPGRLW-----EFIQLGHFHLTELYKINYLVIDETDRMIESGH--FPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 931 V~TP~rl~-----~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~--~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
.-||+... ++|+. +..-+.+.++|+||||++.+||+ .+++..+-. |. ..-.....+.++||.++.+
T Consensus 118 YITPE~AAt~~FQ~lLn~----L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~-LR--S~~~~vpwvALTATA~~~V 190 (641)
T KOG0352|consen 118 YITPEGAATDGFQKLLNG----LANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGS-LR--SVCPGVPWVALTATANAKV 190 (641)
T ss_pred EEchhhhhhhhHHHHHHH----HhhhceeeeEEechhhhHhhhccccCcchhhhhh-HH--hhCCCCceEEeecccChhH
Confidence 99999753 22221 11223589999999999999985 555544322 21 1125678999999999888
Q ss_pred HhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHh--------
Q psy16310 1004 KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ-------- 1075 (1493)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-------- 1075 (1493)
.+.+...........+........++..-..+++ . -.+-...|.+|...
T Consensus 191 qEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~----------~-------------I~D~~~~LaDF~~~~LG~~~~~ 247 (641)
T KOG0352|consen 191 QEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKS----------F-------------ITDCLTVLADFSSSNLGKHEKA 247 (641)
T ss_pred HHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHH----------H-------------hhhHhHhHHHHHHHhcCChhhh
Confidence 8766433322222222222111111111000000 0 00111222222211
Q ss_pred ------CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEE
Q psy16310 1076 ------HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 1149 (1493)
Q Consensus 1076 ------~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~V 1149 (1493)
..|-.||||.|+..|+.++-.|...|+++..||+++...+|..+.+.|.++++.|++||..+++|+|-|+|+.|
T Consensus 248 ~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFV 327 (641)
T KOG0352|consen 248 SQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFV 327 (641)
T ss_pred hcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEE
Confidence 14678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHH
Q psy16310 1150 IHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193 (1493)
Q Consensus 1150 I~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~ 1193 (1493)
||+++|.+..-|.|..||+||.|...+|-+++...|...++-+.
T Consensus 328 iHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 328 IHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred EecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 99999999999999999999999999999999999987776554
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=336.81 Aligned_cols=300 Identities=20% Similarity=0.166 Sum_probs=202.6
Q ss_pred cEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHH
Q psy16310 808 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887 (1493)
Q Consensus 808 dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTre 887 (1493)
+++++||||||||++|++|++..+.. ..+.+++|++||++
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~----------------------------------------~~~~~ii~v~P~~~ 40 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS----------------------------------------QKADRVIIALPTRA 40 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh----------------------------------------CCCCeEEEEeehHH
Confidence 58999999999999999999976532 23457999999999
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEEcCCCHH------------HHHHHhc------CCCcEEEECcHHHHHHHHhCcCcc-
Q psy16310 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTE------------KQLRILN------KCPHILVATPGRLWEFIQLGHFHL- 948 (1493)
Q Consensus 888 La~Q~~~~~~~~~~~~~~~v~~~~gg~~~~------------~~~~~l~------~~~~IlV~TP~rl~~~l~~~~~~~- 948 (1493)
|+.|+++.+..++. ..+..++|+.... ....... ...+|+|+||+++...+..+....
T Consensus 41 L~~q~~~~l~~~f~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~ 117 (358)
T TIGR01587 41 TINAMYRRAKELFG---SNLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYE 117 (358)
T ss_pred HHHHHHHHHHHHhC---cccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHH
Confidence 99999999999742 2344444433211 1111111 135799999999988776521110
Q ss_pred cccc--ceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchh
Q psy16310 949 TELY--KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 1026 (1493)
Q Consensus 949 ~~l~--~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1026 (1493)
..+. ..++|||||||.+.++++.. +..++..+. ..+.|+++||||+|..+...+........
T Consensus 118 ~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~----~~~~~~i~~SATlp~~l~~~~~~~~~~~~----------- 181 (358)
T TIGR01587 118 FTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLK----DNDVPILLMSATLPKFLKEYAEKIGYVEF----------- 181 (358)
T ss_pred HHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHH----HcCCCEEEEecCchHHHHHHHhcCCCccc-----------
Confidence 1111 23789999999998765533 666666553 24689999999999665544321110000
Q ss_pred HHHHhHhccCCCcEEeccccccccccceeeEEEe--cccchhhHHHHHHH--hCCCcEEEEecchhhHHHHHHHHHhcCC
Q psy16310 1027 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC--KHDEKDSYLYYFIL--QHPGRTLVFCNSISSVKRLTQLLTMLKC 1102 (1493)
Q Consensus 1027 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~~l~~~l~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~ 1102 (1493)
......... .....+....+ ....+...+..++. ..++++||||+|+++|+.++..|...+.
T Consensus 182 -----------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~ 247 (358)
T TIGR01587 182 -----------NEPLDLKEE---RRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAP 247 (358)
T ss_pred -----------ccCCCCccc---cccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcC
Confidence 000000000 00000111111 11223333433333 3468999999999999999999988766
Q ss_pred --CccccccCCCHHHHHH----HHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCC-
Q psy16310 1103 --SPLPLHASMNQRQRLK----NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG- 1175 (1493)
Q Consensus 1103 --~~~~lhg~m~~~~R~~----~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G- 1175 (1493)
.+..+||+|++.+|.+ +++.|++|...|||||+++++|+|++ +++||++..| .++|+||+||+||.|+.+
T Consensus 248 ~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~ 324 (358)
T TIGR01587 248 EEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNG 324 (358)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCC
Confidence 4889999999999976 48999999999999999999999995 8999998776 789999999999998643
Q ss_pred ---eEEEEecC
Q psy16310 1176 ---LTLVLIES 1183 (1493)
Q Consensus 1176 ---~~i~l~~~ 1183 (1493)
..+++...
T Consensus 325 ~~~~~~v~~~~ 335 (358)
T TIGR01587 325 ENFEVYIITIA 335 (358)
T ss_pred CCCeEEEEeec
Confidence 55665543
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=326.80 Aligned_cols=351 Identities=17% Similarity=0.204 Sum_probs=237.8
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
+|. .|+++|..+.+ ++..|+ |+.++||+|||++|.+|++-..+.
T Consensus 53 lg~-~p~~vQlig~~-~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-------------------------------- 96 (745)
T TIGR00963 53 LGM-RPFDVQLIGGI-ALHKGK--IAEMKTGEGKTLTATLPAYLNALT-------------------------------- 96 (745)
T ss_pred hCC-CccchHHhhhh-hhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------------------------------
Confidence 354 78999999997 565654 999999999999999999643322
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHhC
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 944 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~~ 944 (1493)
+..+.|++||++||.|.++.+..+..++++++++++||.+...+.... .++|+||||++| .++++.+
T Consensus 97 ----------G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~ 164 (745)
T TIGR00963 97 ----------GKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDN 164 (745)
T ss_pred ----------CCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcc
Confidence 225999999999999999999999999999999999999876554443 479999999999 8888765
Q ss_pred cCc---cccccceeEEEecccchhccCC-C---------------hhHHHHHHHHhccc---------------------
Q psy16310 945 HFH---LTELYKINYLVIDETDRMIESG-H---------------FPELKNILDRVTMT--------------------- 984 (1493)
Q Consensus 945 ~~~---~~~l~~l~~lVlDEah~ll~~~-~---------------~~~l~~il~~l~~~--------------------- 984 (1493)
... ...++.+.++|+||+|+|+-+. . +.....+...|...
T Consensus 165 ~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~ 244 (745)
T TIGR00963 165 MAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKK 244 (745)
T ss_pred cccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHH
Confidence 211 1246789999999999974311 0 00111111111100
Q ss_pred ----------CCC---------------------------CCceEEEEe---------cccccchHhHHhhhccCcCccc
Q psy16310 985 ----------ETS---------------------------QPRQTFVFS---------ATLTHSLKNSLNLKKGQSKSKK 1018 (1493)
Q Consensus 985 ----------~~~---------------------------~~~q~ll~S---------ATl~~~~~~~~~~~~~~~~~~~ 1018 (1493)
... .+-.+++.- -+++..+.+.+..+-+......
T Consensus 245 ~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e 324 (745)
T TIGR00963 245 AEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNE 324 (745)
T ss_pred HHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCC
Confidence 000 001122221 1122334444433222111100
Q ss_pred c-cCCCchhHHH------------------HhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHH---HhC
Q psy16310 1019 V-SKGDPSIKRL------------------QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI---LQH 1076 (1493)
Q Consensus 1019 ~-~~~~~~~~~l------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l---~~~ 1076 (1493)
. ....-....+ .....+.+-.++.+.........-....+.....+|...++..+ ...
T Consensus 325 ~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~ 404 (745)
T TIGR00963 325 NQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAK 404 (745)
T ss_pred ceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhc
Confidence 0 0000000000 11111222222222222111111111223344455666665554 345
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCC-------ccEE
Q psy16310 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG-------IEHV 1149 (1493)
Q Consensus 1077 ~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~-------v~~V 1149 (1493)
+.++||||+|+..++.++..|...|++...+||. +.+|+..+..|+.+...|+|||++++||+||+. ..||
T Consensus 405 grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~V 482 (745)
T TIGR00963 405 GQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYV 482 (745)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEE
Confidence 7899999999999999999999999999999998 889999999999999999999999999999998 5599
Q ss_pred EEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1150 IHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1150 I~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
|+++.|.|...|.||+|||||.|.+|.+..|++..|.
T Consensus 483 I~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 483 IGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred EecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 9999999999999999999999999999999987754
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=328.39 Aligned_cols=350 Identities=16% Similarity=0.175 Sum_probs=232.0
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
.|. .|+++|...+. ++..| .+++++||+|||++|++|++...+.
T Consensus 67 lgl-rpydVQlig~l-~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~-------------------------------- 110 (762)
T TIGR03714 67 LGM-FPYDVQVLGAI-VLHQG--NIAEMKTGEGKTLTATMPLYLNALT-------------------------------- 110 (762)
T ss_pred cCC-CccHHHHHHHH-HhcCC--ceeEecCCcchHHHHHHHHHHHhhc--------------------------------
Confidence 465 66667766665 34444 6999999999999999998755432
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCC---HHHHHHHhcCCCcEEEECcHHH-HHHH
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMS---TEKQLRILNKCPHILVATPGRL-WEFI 941 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~---~~~~~~~l~~~~~IlV~TP~rl-~~~l 941 (1493)
+..++|++||++||.|+++.+..+..++++++.+++++.. ...+.+....+++|++|||++| .+.|
T Consensus 111 ----------g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyL 180 (762)
T TIGR03714 111 ----------GKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYL 180 (762)
T ss_pred ----------CCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHH
Confidence 2359999999999999999999999999999999887632 2222333346789999999999 5655
Q ss_pred HhCcC---ccccccceeEEEecccchhccCC----------------ChhHHHHHHHHhcccC-------------C---
Q psy16310 942 QLGHF---HLTELYKINYLVIDETDRMIESG----------------HFPELKNILDRVTMTE-------------T--- 986 (1493)
Q Consensus 942 ~~~~~---~~~~l~~l~~lVlDEah~ll~~~----------------~~~~l~~il~~l~~~~-------------~--- 986 (1493)
..... .-..+..+.++|+||||.|+-+. .+.....++..|.... +
T Consensus 181 rD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G 260 (762)
T TIGR03714 181 IDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKG 260 (762)
T ss_pred HHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhH
Confidence 43211 11235678999999999974321 1112222222221100 0
Q ss_pred ---------------C---------------------------CCceEEEEec-c--------cccchHhHHhhhccCcC
Q psy16310 987 ---------------S---------------------------QPRQTFVFSA-T--------LTHSLKNSLNLKKGQSK 1015 (1493)
Q Consensus 987 ---------------~---------------------------~~~q~ll~SA-T--------l~~~~~~~~~~~~~~~~ 1015 (1493)
+ .+-.++++-. | ++..+.+.+..+-+...
T Consensus 261 ~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i 340 (762)
T TIGR03714 261 IEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVEL 340 (762)
T ss_pred HHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCC
Confidence 0 0011222211 1 22223333322222111
Q ss_pred cc---------------------cccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH
Q psy16310 1016 SK---------------------KVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074 (1493)
Q Consensus 1016 ~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~ 1074 (1493)
.. ....... ..-.....+.+-.++.+.........-....+.+...+|...++..+.
T Consensus 341 ~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~--~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~ 418 (762)
T TIGR03714 341 SKETRAMASITYQNLFKMFNKLSGMTGTGK--VAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVK 418 (762)
T ss_pred CCCceeeeeeeHHHHHhhCchhcccCCCCh--hHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHH
Confidence 00 0000000 000111222233333333322222222223456666778888877765
Q ss_pred h---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCC-------
Q psy16310 1075 Q---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP------- 1144 (1493)
Q Consensus 1075 ~---~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip------- 1144 (1493)
. .+.++||||+|+..++.++..|...|+++..+||++.+.+|..+..+|+.| .|+|||++++||+|||
T Consensus 419 ~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~ 496 (762)
T TIGR03714 419 EYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAE 496 (762)
T ss_pred HHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccc
Confidence 4 367999999999999999999999999999999999999988888777766 7999999999999999
Q ss_pred --CccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1145 --GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1145 --~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
++.+|++|++|..... +||+|||||.|.+|.+++|++..|.
T Consensus 497 ~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 497 LGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred cCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 9999999999998777 9999999999999999999988664
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=337.35 Aligned_cols=334 Identities=17% Similarity=0.199 Sum_probs=217.0
Q ss_pred CCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcch
Q psy16310 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250 (1493)
Q Consensus 171 ~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1493)
...|+++|.++++.++ .+++.++++|||||||+++++.+. .+..
T Consensus 112 ~~~~r~~Q~~av~~~l-~~~~~il~apTGsGKT~i~~~l~~-~~~~---------------------------------- 155 (501)
T PHA02558 112 KIEPHWYQYDAVYEGL-KNNRRLLNLPTSAGKSLIQYLLSR-YYLE---------------------------------- 155 (501)
T ss_pred cCCCCHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHH-HHHh----------------------------------
Confidence 3579999999998655 567899999999999998754322 2211
Q ss_pred hhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcc
Q psy16310 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330 (1493)
Q Consensus 251 ~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~ 330 (1493)
....++|||+||++|+.|+.+.+..++......+..+.||.... ...+|+|+||++|.+....
T Consensus 156 ------~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~~---- 218 (501)
T PHA02558 156 ------NYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPKE---- 218 (501)
T ss_pred ------cCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchhh----
Confidence 12237999999999999999999988755455566666665432 3469999999999764321
Q ss_pred ccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeecc
Q psy16310 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410 (1493)
Q Consensus 331 ~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl 410 (1493)
.+.++++||+||||++... .+..++..+ +..+++++||||+
T Consensus 219 --~~~~~~~iIvDEaH~~~~~----~~~~il~~~---------------------------------~~~~~~lGLTATp 259 (501)
T PHA02558 219 --WFDQFGMVIVDECHLFTGK----SLTSIITKL---------------------------------DNCKFKFGLTGSL 259 (501)
T ss_pred --hccccCEEEEEchhcccch----hHHHHHHhh---------------------------------hccceEEEEeccC
Confidence 2457899999999999653 345555544 2235899999999
Q ss_pred chhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCc
Q psy16310 411 THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 490 (1493)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (1493)
+........+. .+++ +........ ...... .+........ ....+
T Consensus 260 ~~~~~~~~~~~--------------------~~fG---~i~~~v~~~----~li~~g-~l~~~~~~~v-----~~~~~-- 304 (501)
T PHA02558 260 RDGKANILQYV--------------------GLFG---DIFKPVTTS----QLMEEG-QVTDLKINSI-----FLRYP-- 304 (501)
T ss_pred CCccccHHHHH--------------------HhhC---CceEEecHH----HHHhCC-CcCCceEEEE-----eccCC--
Confidence 64322111000 0000 000000000 000000 0000000000 00000
Q ss_pred chhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHH---hhCCCcEEEEecchhhHHHHHHHHHhc
Q psy16310 491 TLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI---LQHPGRTLVFCNSISSVKRLTQLLTML 567 (1493)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l---~~~~~~~IIF~~s~~~a~~L~~~L~~~ 567 (1493)
....... ... .. ............+...+.... ...+.++||||++.++++.|++.|...
T Consensus 305 --~~~~~~~---~~~---------~~---~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~ 367 (501)
T PHA02558 305 --DEDRVKL---KGE---------DY---QEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKV 367 (501)
T ss_pred --HHHhhhh---ccc---------ch---HHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHc
Confidence 0000000 000 00 000011122233444433333 234578999999999999999999999
Q ss_pred CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEe-chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEE
Q psy16310 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT-DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646 (1493)
Q Consensus 568 ~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaT-dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~ 646 (1493)
+..+..+||+|++.+|..+++.|++|+..||||| +++++|+|+|++++||++++|.+...|+||+||++|.+..+...+
T Consensus 368 g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~ 447 (501)
T PHA02558 368 YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIAT 447 (501)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEE
Confidence 9999999999999999999999999999999999 899999999999999999999999999999999999886654444
Q ss_pred Ee
Q psy16310 647 LI 648 (1493)
Q Consensus 647 l~ 648 (1493)
++
T Consensus 448 i~ 449 (501)
T PHA02558 448 VW 449 (501)
T ss_pred EE
Confidence 43
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=353.16 Aligned_cols=405 Identities=21% Similarity=0.262 Sum_probs=243.8
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
+.-.|++||.+++..++. + |+|+++|||+|||++|++++.+.+.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~-~-n~lv~~ptG~GKT~~a~~~i~~~l~---------------------------------- 55 (773)
T PRK13766 12 NTIEARLYQQLLAATALK-K-NTLVVLPTGLGKTAIALLVIAERLH---------------------------------- 55 (773)
T ss_pred CcCCccHHHHHHHHHHhc-C-CeEEEcCCCccHHHHHHHHHHHHHH----------------------------------
Confidence 334799999999976653 3 9999999999999999999887662
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCc
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~ 329 (1493)
..+.++|||+||++|+.|+.+.+..+....+..+..++|+....... .+...++|+|+||+.+.+.+..+..
T Consensus 56 -------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~-~~~~~~~iiv~T~~~l~~~l~~~~~ 127 (773)
T PRK13766 56 -------KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRA-ELWEKAKVIVATPQVIENDLIAGRI 127 (773)
T ss_pred -------hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHH-HHHhCCCEEEECHHHHHHHHHcCCC
Confidence 12357999999999999999999988655556888899988766543 3344569999999999887766554
Q ss_pred cccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeec
Q psy16310 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409 (1493)
Q Consensus 330 ~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SAT 409 (1493)
. +.++++|||||||++.....+..+...+... .....+++||||
T Consensus 128 ~---~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~---------------------------------~~~~~il~lTaT 171 (773)
T PRK13766 128 S---LEDVSLLIFDEAHRAVGNYAYVYIAERYHED---------------------------------AKNPLVLGLTAS 171 (773)
T ss_pred C---hhhCcEEEEECCccccccccHHHHHHHHHhc---------------------------------CCCCEEEEEEcC
Confidence 3 4478999999999997554443333322211 223568899999
Q ss_pred cchhhhhhhhhhccc--cccccccC--------------------CCchhhhHHhhhhccCCcccchhhhhcccccc---
Q psy16310 410 LTHSLKNSLNLKKGQ--SKSKKVSK--------------------GDPSIKRLQDLLNIKSPKIVDLTEKIGITKTL--- 464 (1493)
Q Consensus 410 l~~~~~~~~~~~~~~--~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 464 (1493)
+......+....... ........ ..+....+...+..............+.....
T Consensus 172 P~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~ 251 (773)
T PRK13766 172 PGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPD 251 (773)
T ss_pred CCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCC
Confidence 743322111110000 00000000 00111111111000000000000000000000
Q ss_pred -c--h-------hhhhhccCCcchhhH--------------HHHhcCCCcchhhHHHhhhhccC-Cccccccccc----c
Q psy16310 465 -T--E-------SKILCKHDEKDSYLY--------------YFILQHPGRTLCEEIQDLLNIKS-PKIVDLTEKI----G 515 (1493)
Q Consensus 465 -~--~-------~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~ 515 (1493)
. . ............+.. ..+.......+..-+..+..... .........+ .
T Consensus 252 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~ 331 (773)
T PRK13766 252 VSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPR 331 (773)
T ss_pred cCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHH
Confidence 0 0 000000000000000 00000000000000000000000 0000000000 0
Q ss_pred ccccccccccccccCchhhHHHHHHhh-----CCCcEEEEecchhhHHHHHHHHHhcCCCccccccC--------CCHHH
Q psy16310 516 ITKTLTESKILCKHDEKDSYLYYFILQ-----HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS--------MNQRQ 582 (1493)
Q Consensus 516 ~~~~~~~~~~~~~~~~k~~~l~~~l~~-----~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~--------~~~~~ 582 (1493)
................|...|..++.. .++++||||+++.+|..|+..|...++.+..+||. |++.+
T Consensus 332 ~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~ 411 (773)
T PRK13766 332 FRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKE 411 (773)
T ss_pred HHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHH
Confidence 000000111122345677777777754 35799999999999999999999989998888885 99999
Q ss_pred HHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchh
Q psy16310 583 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 583 R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
|..+++.|++|+.+|||||+++++|+|+|+|++||+||+|.+...|+||+||+||.| +|.+++++..+....
T Consensus 412 r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~ee 483 (773)
T PRK13766 412 QIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTRDE 483 (773)
T ss_pred HHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCChHH
Confidence 999999999999999999999999999999999999999999999999999999987 599999988766543
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=332.94 Aligned_cols=418 Identities=18% Similarity=0.215 Sum_probs=249.7
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHH-HHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL-TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
|. .|+++|..+.+ ++..|+ |+.++||+|||++|++|++ +.+.
T Consensus 54 g~-~p~~vQlig~~-~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------------------------------- 96 (745)
T TIGR00963 54 GM-RPFDVQLIGGI-ALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------------------------------- 96 (745)
T ss_pred CC-CccchHHhhhh-hhcCCc--eeeecCCCccHHHHHHHHHHHHHh---------------------------------
Confidence 55 69999999997 565554 9999999999999999985 4431
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~~ 327 (1493)
+..|.||+||++||.|.++++..+..++|+++++++|+.+........ .++|+|+||++| .++|..+
T Consensus 97 ----------G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~ 164 (745)
T TIGR00963 97 ----------GKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDN 164 (745)
T ss_pred ----------CCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcc
Confidence 234999999999999999999999999999999999998876654444 479999999999 8888755
Q ss_pred Cc---cccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhc-cccCCCCCceE
Q psy16310 328 HF---HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV-TMTETSQPRQT 403 (1493)
Q Consensus 328 ~~---~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~ 403 (1493)
.. ....++.+.++||||||.++-+.....+ ++. .+...+...+... ..+.+.+..- ....... .+.
T Consensus 165 ~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpL--iis----g~~~~~~~ly~~a---~~i~r~L~~~~dy~~de~-~k~ 234 (745)
T TIGR00963 165 MAHSKEEKVQRPFHFAIIDEVDSILIDEARTPL--IIS----GPAEKSTELYLQA---NRFAKALEKEVHYEVDEK-NRA 234 (745)
T ss_pred cccchhhhhccccceeEeecHHHHhHHhhhhHH--hhc----CCCCCchHHHHHH---HHHHHhhccCCCeEEecC-CCc
Confidence 21 1123568999999999998742211110 110 0000000000000 0111111100 0000011 222
Q ss_pred EEEeeccchhhhhhhhhhccccccccccC-CCchhhhHHhhhh-----ccC-Ccccchhhhhccccccchh---------
Q psy16310 404 FVFSATLTHSLKNSLNLKKGQSKSKKVSK-GDPSIKRLQDLLN-----IKS-PKIVDLTEKIGITKTLTES--------- 467 (1493)
Q Consensus 404 il~SATl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~--------- 467 (1493)
+.++.-=-..+..++.+. ..... .......+...+. ... .+++. .+...+....+..
T Consensus 235 v~Lt~~G~~~~e~~~~~~------~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~-d~~V~ivD~~TGR~~~gr~ws~ 307 (745)
T TIGR00963 235 VLLTEKGIKKAEDLLGVD------NLYDLENSPLIHYINNALKAKELFEKDVDYIVR-DGEVVIVDEFTGRIMEGRRWSD 307 (745)
T ss_pred eeECHHHHHHHHHHcCCc------cccChhhhHHHHHHHHHHHHHHHHhcCCcEEEE-CCEEEEEECCCCcCCCCCccch
Confidence 322211001122222110 00000 0001111111110 000 11100 0000000000000
Q ss_pred ----hhhhcc-------CC---cchhhHHH----HhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccccc
Q psy16310 468 ----KILCKH-------DE---KDSYLYYF----ILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH 529 (1493)
Q Consensus 468 ----~~~~~~-------~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1493)
.+-.+. .. .-.+..+| -...-..+.......+...+.-.+.................++...
T Consensus 308 GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~R~d~~d~i~~t~ 387 (745)
T TIGR00963 308 GLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTE 387 (745)
T ss_pred HHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEEeCCCCCeeeeeCCCeEEcCH
Confidence 000000 00 00111111 1111112223333344444444444433333332222333344445
Q ss_pred CchhhHHHHHH---hhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhc
Q psy16310 530 DEKDSYLYYFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 606 (1493)
Q Consensus 530 ~~k~~~l~~~l---~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~r 606 (1493)
..|...+...+ ...+.++||||+|...++.++..|...|++...+||. +.+|...+..|+.+...|+|||++|+|
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgR 465 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGR 465 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccC
Confidence 56666666554 3346799999999999999999999999999999998 889999999999999999999999999
Q ss_pred cCCCCC-------CcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchh
Q psy16310 607 GLDIPG-------IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 607 GlDip~-------v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
|+||+. .-+||+|+.|.|...|.||+|||||.|.+|.+.+|++.+|.-.
T Consensus 466 GtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~ 521 (745)
T TIGR00963 466 GTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLM 521 (745)
T ss_pred CcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHHH
Confidence 999998 5599999999999999999999999999999999998876443
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-32 Score=331.11 Aligned_cols=417 Identities=15% Similarity=0.140 Sum_probs=242.5
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
|. .|+++|..... ++.. ..|+.++||+|||++|++|++.+.+
T Consensus 68 gl-rpydVQlig~l-~l~~--G~Iaem~TGeGKTLta~Lpa~l~aL---------------------------------- 109 (762)
T TIGR03714 68 GM-FPYDVQVLGAI-VLHQ--GNIAEMKTGEGKTLTATMPLYLNAL---------------------------------- 109 (762)
T ss_pred CC-CccHHHHHHHH-HhcC--CceeEecCCcchHHHHHHHHHHHhh----------------------------------
Confidence 55 67777776665 4444 3699999999999999999865442
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCC---HHHHHHHhcCCCCEEEeCcHHH-HHHHH
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMS---TEKQLRILNKCPHILVATPGRL-WEFIQ 325 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~---~~~~~~~l~~~~~IiV~TP~~L-~~~l~ 325 (1493)
.+..++|++||++||.|..+++..+...+|+++++++++.. ..........+++|+++||++| .+.|.
T Consensus 110 --------~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLr 181 (762)
T TIGR03714 110 --------TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLI 181 (762)
T ss_pred --------cCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHH
Confidence 22359999999999999999999999999999999887622 2222333345789999999999 45553
Q ss_pred cCC---ccccccccccEEEEecCchhhhcC-ChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhc-cccCCCCC
Q psy16310 326 LGH---FHLTELYKINYLVIDETDRMIESG-HFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV-TMTETSQP 400 (1493)
Q Consensus 326 ~~~---~~~~~l~~i~~lViDEAh~ll~~~-~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 400 (1493)
... ..-..+..+.++|+||||.||-+. ..+.+ +..- ...... . ......+.+.+... ...- ...
T Consensus 182 D~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpli---isg~----~~~~~~-~--y~~~~~~v~~l~~~~dy~~-d~~ 250 (762)
T TIGR03714 182 DNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLV---ISGA----PRVQSN-L--YHIADTFVRTLKEDVDYIF-KKD 250 (762)
T ss_pred HHhhcchhhcccccCcEEEEecHhhHhhccCcCCee---eeCC----CccchH-H--HHHHHHHHHhcCCCCCeEE-EcC
Confidence 221 111125578999999999997443 11100 0000 000000 0 00000000000000 0000 011
Q ss_pred ceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhh----------hccCCccc------ch---hhhhccc
Q psy16310 401 RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLL----------NIKSPKIV------DL---TEKIGIT 461 (1493)
Q Consensus 401 ~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~------~~---~~~~~~~ 461 (1493)
.+.+.++..--..+..++.+. ...++....+..++ .....+++ -+ ++.....
T Consensus 251 ~~~v~lt~~G~~~~e~~~~~~---------~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~g 321 (762)
T TIGR03714 251 KKEVWLTDKGIEKAEQYFKID---------NLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEG 321 (762)
T ss_pred CCeeeecHhHHHHHHHHcCCC---------ccCChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCC
Confidence 223333322112222222110 00111111111110 00001110 00 0000000
Q ss_pred cccchh---hhhhcc-------CC---cchhhHHHH----hcCCCcchhhHHHhhhhccCCccccccccccccccccccc
Q psy16310 462 KTLTES---KILCKH-------DE---KDSYLYYFI----LQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESK 524 (1493)
Q Consensus 462 ~~~~~~---~~~~~~-------~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (1493)
..+... .+-... .. .-.+..+|- ...-..+.......+...+.-.+.................
T Consensus 322 r~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~d~ 401 (762)
T TIGR03714 322 TKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDK 401 (762)
T ss_pred CCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEEEcCCCCCeeeeeCCCe
Confidence 000000 000000 00 011111111 1111122233334444555544444444433333333445
Q ss_pred cccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEe
Q psy16310 525 ILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 601 (1493)
Q Consensus 525 ~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaT 601 (1493)
+++....|...+...+.. .+.++||||+|+..++.++..|...|+++..+||.+.+.++..+..+|+.| .|+|||
T Consensus 402 i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIAT 479 (762)
T TIGR03714 402 IYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVAT 479 (762)
T ss_pred EEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEc
Confidence 666777788888877754 367999999999999999999999999999999999999988887777777 799999
Q ss_pred chhhccCCCC---------CCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchh
Q psy16310 602 DVAARGLDIP---------GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 602 dv~~rGlDip---------~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
|+++||+||| ++.+|++|++|....+ +||+|||||.|.+|.+++|++.+|.-.
T Consensus 480 dmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~l~ 541 (762)
T TIGR03714 480 SMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDDLI 541 (762)
T ss_pred cccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchhhh
Confidence 9999999999 9999999999988777 999999999999999999998866443
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=323.97 Aligned_cols=304 Identities=20% Similarity=0.177 Sum_probs=200.4
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHH
Q psy16310 191 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270 (1493)
Q Consensus 191 dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTre 270 (1493)
+++++||||||||++|++|++..+.. ..+.+++|++||++
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~----------------------------------------~~~~~ii~v~P~~~ 40 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS----------------------------------------QKADRVIIALPTRA 40 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh----------------------------------------CCCCeEEEEeehHH
Confidence 68999999999999999999976532 23357999999999
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEEcCCCHH------------HHHHHhc------CCCCEEEeCcHHHHHHHHcCCccc-
Q psy16310 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTE------------KQLRILN------KCPHILVATPGRLWEFIQLGHFHL- 331 (1493)
Q Consensus 271 La~Qi~~~~~~l~~~~~i~v~~~~G~~~~~------------~~~~~l~------~~~~IiV~TP~~L~~~l~~~~~~~- 331 (1493)
|+.|+++.+..+... .+..++|+.... ..+.... ...+|+|+||+.++..+..+....
T Consensus 41 L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~ 117 (358)
T TIGR01587 41 TINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYE 117 (358)
T ss_pred HHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHH
Confidence 999999999887432 344444443211 1111111 125799999999988876522111
Q ss_pred cccc--cccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeec
Q psy16310 332 TELY--KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409 (1493)
Q Consensus 332 ~~l~--~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SAT 409 (1493)
..+. ..++|||||||.+.+.++.. +..++..+. ....|+++||||
T Consensus 118 ~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~--------------------------------~~~~~~i~~SAT 164 (358)
T TIGR01587 118 FTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLK--------------------------------DNDVPILLMSAT 164 (358)
T ss_pred HHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHH--------------------------------HcCCCEEEEecC
Confidence 0011 24789999999998764433 555554442 124689999999
Q ss_pred cchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCC
Q psy16310 410 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 489 (1493)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (1493)
+|..+..++....... ......... ..... .
T Consensus 165 lp~~l~~~~~~~~~~~----------------------~~~~~~~~~----~~~~~----------~------------- 195 (358)
T TIGR01587 165 LPKFLKEYAEKIGYVE----------------------FNEPLDLKE----ERRFE----------R------------- 195 (358)
T ss_pred chHHHHHHHhcCCCcc----------------------cccCCCCcc----ccccc----------c-------------
Confidence 9966544432100000 000000000 00000 0
Q ss_pred cchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHh--hCCCcEEEEecchhhHHHHHHHHHhc
Q psy16310 490 RTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL--QHPGRTLVFCNSISSVKRLTQLLTML 567 (1493)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~--~~~~~~IIF~~s~~~a~~L~~~L~~~ 567 (1493)
... .........+...+..++. ..++++||||++++.|+.++..|...
T Consensus 196 ---------------~~~---------------~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~ 245 (358)
T TIGR01587 196 ---------------HRF---------------IKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKEN 245 (358)
T ss_pred ---------------ccc---------------eeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhh
Confidence 000 0000000112222333332 24679999999999999999999877
Q ss_pred CC--CccccccCCCHHHHHH----HHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCC
Q psy16310 568 KC--SPLPLHASMNQRQRLK----NLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641 (1493)
Q Consensus 568 ~~--~~~~lhg~~~~~~R~~----vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~ 641 (1493)
+. .+..+||+|++.+|.+ +++.|++|...|||||+++++|+||+ +++||+|..| +.+|+||+||+||.|+.
T Consensus 246 ~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~ 322 (358)
T TIGR01587 246 APEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRK 322 (358)
T ss_pred cCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCC
Confidence 65 4889999999999976 48999999999999999999999995 8999999877 78999999999998865
Q ss_pred ----CeEEEEecCCc
Q psy16310 642 ----GLTVVLIESDE 652 (1493)
Q Consensus 642 ----G~~i~l~~~~e 652 (1493)
|.++++....+
T Consensus 323 ~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 323 NGENFEVYIITIAPE 337 (358)
T ss_pred CCCCCeEEEEeecCC
Confidence 36676665544
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-32 Score=354.63 Aligned_cols=315 Identities=17% Similarity=0.230 Sum_probs=210.9
Q ss_pred HHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHH
Q psy16310 161 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 240 (1493)
Q Consensus 161 ~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1493)
...+.+.+.....|+++|+.++|. +..|+|++++||||||||+ |++|+...+..
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~-il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~------------------------ 119 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKR-VLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK------------------------ 119 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHH-HhCCCeEEEECCCCCCHHH-HHHHHHHHHHh------------------------
Confidence 344555554455799999999994 5578999999999999997 77777655421
Q ss_pred HHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEE---EEEEcCCCHHHHH---HHhc-CCCCEE
Q psy16310 241 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV---ACVVGGMSTEKQL---RILN-KCPHIL 313 (1493)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v---~~~~G~~~~~~~~---~~l~-~~~~Ii 313 (1493)
.++++|||+|||+||.|+++.+..++...++.+ ..++|+.+...+. ..+. ++++||
T Consensus 120 -----------------~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIl 182 (1171)
T TIGR01054 120 -----------------KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDIL 182 (1171)
T ss_pred -----------------cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEE
Confidence 246799999999999999999999987766554 3567988876543 2333 358999
Q ss_pred EeCcHHHHHHHHcCCccccccccccEEEEecCchhhh-----------cCChhh-HHHHHHhhccccCCCccccccccCC
Q psy16310 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-----------SGHFPE-LKNILDRVTMTETSQPRQTMIESGH 381 (1493)
Q Consensus 314 V~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-----------~~~~~~-l~~il~~l~~~~~~~~~~~~~~~~~ 381 (1493)
|+||++|.+.+..- . . +++++||||||+|++ +||.++ +..+++.+....... .
T Consensus 183 V~Tp~rL~~~~~~l----~-~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~---------~ 247 (1171)
T TIGR01054 183 ITTTMFLSKNYDEL----G-P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLY---------R 247 (1171)
T ss_pred EECHHHHHHHHHHh----c-C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccc---------h
Confidence 99999998877531 1 1 689999999999998 567653 566655432210000 0
Q ss_pred cchhhhhhhhccccCCCCCce--EEEEeec-cchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhh
Q psy16310 382 FPELKNILDRVTMTETSQPRQ--TFVFSAT-LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI 458 (1493)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~q--~il~SAT-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (1493)
...+....... ...+..+| +++|||| .|..+...+. .+++. +.+.
T Consensus 248 ~~~~~~~~~~~--~~~~~~~q~~li~~SAT~~p~~~~~~l~---------------------r~ll~------~~v~--- 295 (1171)
T TIGR01054 248 ALHAKKRLELL--EAIPGKKRGCLIVSSATGRPRGKRAKLF---------------------RELLG------FEVG--- 295 (1171)
T ss_pred HHHHHHHHHHH--HhhhhccCcEEEEEeCCCCccccHHHHc---------------------ccccc------eEec---
Confidence 00000000000 01123334 6779999 4543321110 00000 0000
Q ss_pred ccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHH
Q psy16310 459 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 538 (1493)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 538 (1493)
........+.+.+..+. .+...+..
T Consensus 296 -----------------------------------------------------~~~~~~r~I~~~~~~~~--~~~~~L~~ 320 (1171)
T TIGR01054 296 -----------------------------------------------------GGSDTLRNVVDVYVEDE--DLKETLLE 320 (1171)
T ss_pred -----------------------------------------------------CccccccceEEEEEecc--cHHHHHHH
Confidence 00000001111111111 11334556
Q ss_pred HHhhCCCcEEEEecch---hhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEE----echhhccCCCC
Q psy16310 539 FILQHPGRTLVFCNSI---SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA----TDVAARGLDIP 611 (1493)
Q Consensus 539 ~l~~~~~~~IIF~~s~---~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVa----Tdv~~rGlDip 611 (1493)
++...+.++||||+++ +.|+.|+..|...|+.+..+||+|++ .+++.|++|+++|||| |++++||||+|
T Consensus 321 ll~~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip 396 (1171)
T TIGR01054 321 IVKKLGTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLP 396 (1171)
T ss_pred HHHHcCCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCC
Confidence 6666677899999999 99999999999999999999999973 6899999999999999 49999999999
Q ss_pred C-CcEEEEecCCCC
Q psy16310 612 G-IEHVIHYHVPRT 624 (1493)
Q Consensus 612 ~-v~~VI~yd~P~s 624 (1493)
+ |++|||||+|..
T Consensus 397 ~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 397 ERVRYAVFLGVPKF 410 (1171)
T ss_pred ccccEEEEECCCCE
Confidence 9 899999999976
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >KOG0354|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-32 Score=322.72 Aligned_cols=364 Identities=23% Similarity=0.263 Sum_probs=239.8
Q ss_pred CHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHH
Q psy16310 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEV 855 (1493)
Q Consensus 776 ~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 855 (1493)
++.......--+...++.||.+....+| |+|+|+++|||+|||++++..++.++
T Consensus 48 ~~s~~~~~~~p~~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~------------------------ 101 (746)
T KOG0354|consen 48 DESAAQRWIYPTNLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHF------------------------ 101 (746)
T ss_pred ChhhhccccccCcccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHH------------------------
Confidence 3333333333455678999999998888 89999999999999999999998887
Q ss_pred HHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcH
Q psy16310 856 LEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935 (1493)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~ 935 (1493)
...++.++|+++||+-|+.|+...+..++.. ..+....||.........+-...+|+|+||+
T Consensus 102 ----------------rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQ 163 (746)
T KOG0354|consen 102 ----------------EWRPKGKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQ 163 (746)
T ss_pred ----------------hcCCcceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChH
Confidence 2234478999999999999999777777644 5666666775443333344456799999999
Q ss_pred HHHHHHHhCcCccccccceeEEEecccchhccCCChhHHH-HHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCc
Q psy16310 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELK-NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014 (1493)
Q Consensus 936 rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~-~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~ 1014 (1493)
.|.+.|.++.... |+.+.++||||||+-....-+..+. ..+..- ....|++++|||+............+..
T Consensus 164 il~ndL~~~~~~~--ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k-----~~~~qILgLTASpG~~~~~v~~~I~~L~ 236 (746)
T KOG0354|consen 164 ILENDLKSGLHDE--LSDFSLIVFDECHRTSKNHPYNNIMREYLDLK-----NQGNQILGLTASPGSKLEQVQNVIDNLC 236 (746)
T ss_pred hhhhhcccccccc--cceEEEEEEcccccccccccHHHHHHHHHHhh-----hccccEEEEecCCCccHHHHHHHHHhhh
Confidence 9999998766543 7789999999999976654444443 333322 2334999999999854333220000000
Q ss_pred --------------------------------------------------------C---cccccC-------------C
Q psy16310 1015 --------------------------------------------------------K---SKKVSK-------------G 1022 (1493)
Q Consensus 1015 --------------------------------------------------------~---~~~~~~-------------~ 1022 (1493)
. ...... .
T Consensus 237 asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (746)
T KOG0354|consen 237 ASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNG 316 (746)
T ss_pred eecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCC
Confidence 0 000000 0
Q ss_pred C--ch--hHHHH--h----HhccCCCcEE-------eccccccccc-------------------cceeeEEE-ecccch
Q psy16310 1023 D--PS--IKRLQ--D----LLNIKSPKIV-------DLTEKIGITK-------------------TLTESKIL-CKHDEK 1065 (1493)
Q Consensus 1023 ~--~~--~~~l~--~----~~~~~~~~~~-------~~~~~~~~~~-------------------~~~~~~~~-~~~~~k 1065 (1493)
. .. +..+. . .+....-..+ +......... .+...... .....|
T Consensus 317 ~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npk 396 (746)
T KOG0354|consen 317 PENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPK 396 (746)
T ss_pred CccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChh
Confidence 0 00 00000 0 0000000000 0000000000 00000000 012345
Q ss_pred hhHHHHHHHhC-----CCcEEEEecchhhHHHHHHHHHhc---CCCcccc--------ccCCCHHHHHHHHHHHhcCCCC
Q psy16310 1066 DSYLYYFILQH-----PGRTLVFCNSISSVKRLTQLLTML---KCSPLPL--------HASMNQRQRLKNLDRFRDQNNS 1129 (1493)
Q Consensus 1066 ~~~l~~~l~~~-----~~~~IVF~~s~~~~~~l~~~L~~~---~~~~~~l--------hg~m~~~~R~~~~~~F~~g~~~ 1129 (1493)
...+..++..+ ..++||||.++..|..|..+|... |++...+ ..+|+|.++..+++.|+.|+++
T Consensus 397 le~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N 476 (746)
T KOG0354|consen 397 LEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN 476 (746)
T ss_pred HHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc
Confidence 55555555432 568999999999999999999832 3333332 3489999999999999999999
Q ss_pred eEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHH
Q psy16310 1130 ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192 (1493)
Q Consensus 1130 VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~ 1192 (1493)
|||||+|+++||||+.|+.||.||.-.++...+||.|| ||+ +.|.++++++..+...+...
T Consensus 477 vLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~~~~E~~ 537 (746)
T KOG0354|consen 477 VLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVIEFERN 537 (746)
T ss_pred EEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhHHHHHHH
Confidence 99999999999999999999999999999999999999 998 57899999886666555443
|
|
| >KOG0351|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=337.21 Aligned_cols=337 Identities=20% Similarity=0.247 Sum_probs=257.6
Q ss_pred HHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHH
Q psy16310 780 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 859 (1493)
Q Consensus 780 ~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (1493)
.-....+|...++|-|.++|. ++..|+|+++.+|||+||++||.||++-
T Consensus 254 ~~l~~~Fg~~~FR~~Q~eaI~-~~l~Gkd~fvlmpTG~GKSLCYQlPA~l------------------------------ 302 (941)
T KOG0351|consen 254 LLLKEVFGHKGFRPNQLEAIN-ATLSGKDCFVLMPTGGGKSLCYQLPALL------------------------------ 302 (941)
T ss_pred HHHHHHhccccCChhHHHHHH-HHHcCCceEEEeecCCceeeEeeccccc------------------------------
Confidence 334455799999999999998 7779999999999999999999999872
Q ss_pred HHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH---Hhc-C--CCcEEEEC
Q psy16310 860 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---ILN-K--CPHILVAT 933 (1493)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~---~l~-~--~~~IlV~T 933 (1493)
.++.+|||.|...|+..+...+.. .++....+.++.....+.. .+. . ..+|+..|
T Consensus 303 ---------------~~gitvVISPL~SLm~DQv~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvt 363 (941)
T KOG0351|consen 303 ---------------LGGVTVVISPLISLMQDQVTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVT 363 (941)
T ss_pred ---------------cCCceEEeccHHHHHHHHHHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 223699999999999988887744 3589999999988765433 232 2 46899999
Q ss_pred cHHHHHHHHhCcCccccccc---eeEEEecccchhccCCC--hhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHh
Q psy16310 934 PGRLWEFIQLGHFHLTELYK---INYLVIDETDRMIESGH--FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008 (1493)
Q Consensus 934 P~rl~~~l~~~~~~~~~l~~---l~~lVlDEah~ll~~~~--~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~ 1008 (1493)
|+++...-.... .+..+.. +.++|+||||++.+||| ++.+..+-..... .+...++.+|||.+..+...+
T Consensus 364 PE~v~~~~~l~~-~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~---~~~vP~iALTATAT~~v~~DI- 438 (941)
T KOG0351|consen 364 PEKVVASEGLLE-SLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIR---FPGVPFIALTATATERVREDV- 438 (941)
T ss_pred HHHhhcccchhh-HHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhh---CCCCCeEEeehhccHHHHHHH-
Confidence 999864321100 1122334 88999999999999975 5555554433321 244789999999987766544
Q ss_pred hhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecc-cchhhHHHHHHHhC--CCcEEEEec
Q psy16310 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQH--PGRTLVFCN 1085 (1493)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~--~~~~IVF~~ 1085 (1493)
...+++..+.++.-. ....++.. .+.... ......+...+..+ ...+||||.
T Consensus 439 ---------------------i~~L~l~~~~~~~~s---fnR~NL~y-eV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~ 493 (941)
T KOG0351|consen 439 ---------------------IRSLGLRNPELFKSS---FNRPNLKY-EVSPKTDKDALLDILEESKLRHPDQSGIIYCL 493 (941)
T ss_pred ---------------------HHHhCCCCcceeccc---CCCCCceE-EEEeccCccchHHHHHHhhhcCCCCCeEEEeC
Confidence 344555555533211 01112211 122222 12222223333332 568999999
Q ss_pred chhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHH
Q psy16310 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165 (1493)
Q Consensus 1086 s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~ 1165 (1493)
++..|+.++..|...|+.+..||++|+..+|..+...|..++++|+|||=++++|||.|+|+.||||.+|.+.+.|.|.+
T Consensus 494 sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~ 573 (941)
T KOG0351|consen 494 SRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEA 573 (941)
T ss_pred CcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCeEEEEecCCCHHHHHHHHHhc
Q psy16310 1166 GRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196 (1493)
Q Consensus 1166 GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~ 1196 (1493)
|||||.|....|++|+...+...++.+...-
T Consensus 574 GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 574 GRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred cccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 9999999999999999999888888777654
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=339.18 Aligned_cols=354 Identities=25% Similarity=0.289 Sum_probs=261.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHH
Q psy16310 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 854 (1493)
Q Consensus 775 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 854 (1493)
.+..+..++.+.|+..|.++|.+|+. .+..|+|+||+.+||||||++|++||+++++...
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~-~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------------------- 114 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALR-LIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP------------------- 114 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHH-HHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc-------------------
Confidence 45556888999999999999999996 7788999999999999999999999999997632
Q ss_pred HHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCC--cEEEEEEcCCCHHHHHHHhcCCCcEEEE
Q psy16310 855 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP--VKVACVVGGMSTEKQLRILNKCPHILVA 932 (1493)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~--~~v~~~~gg~~~~~~~~~l~~~~~IlV~ 932 (1493)
..++|||.||++||+.+.+.|+++...++ +.+....|+....+........|+||++
T Consensus 115 ---------------------~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllT 173 (851)
T COG1205 115 ---------------------SARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLT 173 (851)
T ss_pred ---------------------CccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEe
Confidence 23799999999999999999999988877 8888888988888777788889999999
Q ss_pred CcHHHHHHHHhCc-CccccccceeEEEecccchhccCCChhHHHHHHHHhccc--CCCCCceEEEEecccccchHhHHhh
Q psy16310 933 TPGRLWEFIQLGH-FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT--ETSQPRQTFVFSATLTHSLKNSLNL 1009 (1493)
Q Consensus 933 TP~rl~~~l~~~~-~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~--~~~~~~q~ll~SATl~~~~~~~~~~ 1009 (1493)
||.+|..++-+.. .....+.++++||+||+|.+ ...|+..+..++++|... .-+.+.|+++.|||+.+........
T Consensus 174 NpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY-rGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l 252 (851)
T COG1205 174 NPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY-RGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEEL 252 (851)
T ss_pred CHHHHHHHhccCcchHHHHHhcCcEEEEecceec-cccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHh
Confidence 9999988554333 33344678999999999964 445666666666665431 2235789999999998654332211
Q ss_pred hccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhh
Q psy16310 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 1089 (1493)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~ 1089 (1493)
. +......+... ........+........ ..... +.-........+...+...+-++|+|+.++..
T Consensus 253 ~-~~~f~~~v~~~----------g~~~~~~~~~~~~p~~~--~~~~~-~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~ 318 (851)
T COG1205 253 F-GRDFEVPVDED----------GSPRGLRYFVRREPPIR--ELAES-IRRSALAELATLAALLVRNGIQTLVFFRSRKQ 318 (851)
T ss_pred c-CCcceeeccCC----------CCCCCceEEEEeCCcch--hhhhh-cccchHHHHHHHHHHHHHcCceEEEEEehhhh
Confidence 1 10000000000 00000111100000000 00000 00111222334445555677899999999999
Q ss_pred HHHHH----HHHHhcC----CCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCC-ChhH
Q psy16310 1090 VKRLT----QLLTMLK----CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR-TSEI 1160 (1493)
Q Consensus 1090 ~~~l~----~~L~~~~----~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~-s~~~ 1160 (1493)
++.++ ..+...+ ..+..++|+|...+|.+++..|+.|++.++++|.+++-|+||-+++.||.+..|. +..+
T Consensus 319 ~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~ 398 (851)
T COG1205 319 VELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLS 398 (851)
T ss_pred hhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHH
Confidence 99997 4444445 5678899999999999999999999999999999999999999999999999999 8999
Q ss_pred HHHHHhccCCCCCCCeEEEEecCC
Q psy16310 1161 YIHRSGRTARANNEGLTLVLIESD 1184 (1493)
Q Consensus 1161 yiqr~GR~gR~g~~G~~i~l~~~~ 1184 (1493)
|+||+||+||.++.+..+++...+
T Consensus 399 ~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 399 FRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred HHHhhhhccCCCCCceEEEEeCCC
Confidence 999999999999777777776643
|
|
| >KOG0352|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-31 Score=289.70 Aligned_cols=350 Identities=17% Similarity=0.282 Sum_probs=239.7
Q ss_pred HHHHHHHC-CCCC-ChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHH
Q psy16310 162 IIRALYQK-GFKT-PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 239 (1493)
Q Consensus 162 l~~~l~~~-g~~~-pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1493)
+.++|++. |+.+ -++.|..++..++.+.+||.|++|||+||+|+|.||.|-+
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-------------------------- 60 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-------------------------- 60 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--------------------------
Confidence 44555543 6655 3789999999888889999999999999999999998721
Q ss_pred HHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHh------cCCCCEE
Q psy16310 240 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL------NKCPHIL 313 (1493)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l------~~~~~Ii 313 (1493)
+...||+.|..+|...+.+.+..+ .+.+..+...++..+..+.+ .....++
T Consensus 61 -------------------~gITIV~SPLiALIkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~L 117 (641)
T KOG0352|consen 61 -------------------GGITIVISPLIALIKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKML 117 (641)
T ss_pred -------------------CCeEEEehHHHHHHHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEE
Confidence 236999999999999999999776 46666666666655543333 2345699
Q ss_pred EeCcHHHH-----HHHHcCCccccccccccEEEEecCchhhhcC--ChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 314 VATPGRLW-----EFIQLGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 314 V~TP~~L~-----~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~--~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
..||+.-. .+|+. -.. -..++++|+||||++..|| |.+.+..+-....
T Consensus 118 YITPE~AAt~~FQ~lLn~-L~~---r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS--------------------- 172 (641)
T KOG0352|consen 118 YITPEGAATDGFQKLLNG-LAN---RDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRS--------------------- 172 (641)
T ss_pred EEchhhhhhhhHHHHHHH-Hhh---hceeeeEEechhhhHhhhccccCcchhhhhhHHh---------------------
Confidence 99998642 22221 111 1147899999999999886 5555443332111
Q ss_pred hhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccch
Q psy16310 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 466 (1493)
Q Consensus 387 ~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1493)
..+....+.++||.++.+.+-+. ..+....|..+.-+..+.
T Consensus 173 ----------~~~~vpwvALTATA~~~VqEDi~----------------------~qL~L~~PVAiFkTP~FR------- 213 (641)
T KOG0352|consen 173 ----------VCPGVPWVALTATANAKVQEDIA----------------------FQLKLRNPVAIFKTPTFR------- 213 (641)
T ss_pred ----------hCCCCceEEeecccChhHHHHHH----------------------HHHhhcCcHHhccCcchh-------
Confidence 12345789999999987765331 112222222111111110
Q ss_pred hhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCc
Q psy16310 467 SKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 546 (1493)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~ 546 (1493)
. .++|-+.... .+.+.+..+..+.. ..++-...+. +.-....|-
T Consensus 214 ----------~-NLFYD~~~K~--~I~D~~~~LaDF~~-------~~LG~~~~~~----------------~~~K~~~GC 257 (641)
T KOG0352|consen 214 ----------D-NLFYDNHMKS--FITDCLTVLADFSS-------SNLGKHEKAS----------------QNKKTFTGC 257 (641)
T ss_pred ----------h-hhhHHHHHHH--HhhhHhHhHHHHHH-------HhcCChhhhh----------------cCCCCcCcc
Confidence 0 0111110000 00000000000000 0000000000 000112367
Q ss_pred EEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChH
Q psy16310 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626 (1493)
Q Consensus 547 ~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~ 626 (1493)
.||||.||+.|++++-.|...|+++..+|+|+...+|+.+.+.|.+|++.|++||..+++|+|-|+|+.|||+++|.|+.
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~A 337 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLA 337 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 627 IYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 627 ~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
.|.|..|||||.|.+.+|-++|+..|......+.
T Consensus 338 gYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 338 GYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred HHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 9999999999999999999999999988776663
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=307.86 Aligned_cols=309 Identities=19% Similarity=0.180 Sum_probs=194.5
Q ss_pred HHHhhHHHhhccCC-cEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhc
Q psy16310 794 IQSMVMPSALLARK-DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 872 (1493)
Q Consensus 794 iQ~~~i~~~l~~~~-dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (1493)
+|.++++.+..++. +++++||||||||++|++|++..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------------------------------------------ 38 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------------------------------------------ 38 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------------------------------------------
Confidence 49999985554432 47889999999999999998741
Q ss_pred cCCCeEEEEEcccHHHHHHHHHHHHHhhCC----CCcEEEEEEcCCCHH--HH------------------HHHhcCCCc
Q psy16310 873 TRNKLYALILAPTRELAIQVQNHILDAGKY----TPVKVACVVGGMSTE--KQ------------------LRILNKCPH 928 (1493)
Q Consensus 873 ~~~~~~~lil~PTreLa~Q~~~~~~~~~~~----~~~~v~~~~gg~~~~--~~------------------~~~l~~~~~ 928 (1493)
..+++|++||++|+.|+++.++.+... .+..+..+.|....+ .. .......++
T Consensus 39 ---~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~ 115 (357)
T TIGR03158 39 ---ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPI 115 (357)
T ss_pred ---CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCC
Confidence 124899999999999999999987643 256666666653221 00 011134678
Q ss_pred EEEECcHHHHHHHHhCcCcc-----ccccceeEEEecccchhccCCChh-----HHHHHHHHhcccCCCCCceEEEEecc
Q psy16310 929 ILVATPGRLWEFIQLGHFHL-----TELYKINYLVIDETDRMIESGHFP-----ELKNILDRVTMTETSQPRQTFVFSAT 998 (1493)
Q Consensus 929 IlV~TP~rl~~~l~~~~~~~-----~~l~~l~~lVlDEah~ll~~~~~~-----~l~~il~~l~~~~~~~~~q~ll~SAT 998 (1493)
|+++||+.|..++....... ..+..+++|||||+|.+..++... ....++... ....+++++|||
T Consensus 116 illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~i~lSAT 190 (357)
T TIGR03158 116 ILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFF-----ECRRKFVFLSAT 190 (357)
T ss_pred EEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhh-----hcCCcEEEEecC
Confidence 99999999876665322111 124689999999999976543211 222222222 134699999999
Q ss_pred cccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEecccc---ccccccceeeEEEecccchhhHH---HHH
Q psy16310 999 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK---IGITKTLTESKILCKHDEKDSYL---YYF 1072 (1493)
Q Consensus 999 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~l---~~~ 1072 (1493)
++..+...+..............+. .+ .....+....-... ..+...+...+.. ....+...+ ...
T Consensus 191 ~~~~~~~~l~~~~~~~~~~~~v~g~-~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~ 262 (357)
T TIGR03158 191 PDPALILRLQNAKQAGVKIAPIDGE-KY------QFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEE 262 (357)
T ss_pred CCHHHHHHHHhccccCceeeeecCc-cc------ccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHH
Confidence 9987666554221000000000000 00 00000000000000 0001122222222 222222222 222
Q ss_pred HH-----hCCCcEEEEecchhhHHHHHHHHHhcC--CCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCC
Q psy16310 1073 IL-----QHPGRTLVFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 1145 (1493)
Q Consensus 1073 l~-----~~~~~~IVF~~s~~~~~~l~~~L~~~~--~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~ 1145 (1493)
+. ..++++||||||+..++.++..|+..+ +.+..+||.|++.+|.++ ++..|||||++++||||+|.
T Consensus 263 i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~ 336 (357)
T TIGR03158 263 VIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKR 336 (357)
T ss_pred HHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCC
Confidence 21 235789999999999999999999865 567889999999998754 47899999999999999998
Q ss_pred ccEEEEecCCCChhHHHHHHhccC
Q psy16310 1146 IEHVIHYHVPRTSEIYIHRSGRTA 1169 (1493)
Q Consensus 1146 v~~VI~~d~p~s~~~yiqr~GR~g 1169 (1493)
+ +|| ++ |.+.++|+||+||+|
T Consensus 337 ~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 337 D-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred c-eEE-EC-CCCHHHHhhhcccCC
Confidence 7 666 55 899999999999997
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=333.73 Aligned_cols=359 Identities=25% Similarity=0.297 Sum_probs=264.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHH
Q psy16310 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 237 (1493)
Q Consensus 158 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 237 (1493)
....+..++.+.|+..|+++|.+|+. .+.+|+|+||+.+||||||.+|++||++++++.
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~-~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~-------------------- 113 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALR-LIREGRNVVVTTGTGSGKTESFLLPILDHLLRD-------------------- 113 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHH-HHHCCCCEEEECCCCCchhHHHHHHHHHHHhhC--------------------
Confidence 44456888899999999999999997 778899999999999999999999999999752
Q ss_pred HHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCC--eEEEEEEcCCCHHHHHHHhcCCCCEEEe
Q psy16310 238 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP--VKVACVVGGMSTEKQLRILNKCPHILVA 315 (1493)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~--i~v~~~~G~~~~~~~~~~l~~~~~IiV~ 315 (1493)
...++|+|.||++||+.|.+.|.++....+ +.+..++|++..........+.++||++
T Consensus 114 --------------------~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllT 173 (851)
T COG1205 114 --------------------PSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLT 173 (851)
T ss_pred --------------------cCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEe
Confidence 122699999999999999999999887777 8899999999988887888899999999
Q ss_pred CcHHHHHHHHcCCcc-ccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccc
Q psy16310 316 TPGRLWEFIQLGHFH-LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394 (1493)
Q Consensus 316 TP~~L~~~l~~~~~~-~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1493)
+|.+|..++...+.. ...++++++||+||+|.. ...|+.++..+++++.....
T Consensus 174 NpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY-rGv~GS~vA~llRRL~~~~~------------------------- 227 (851)
T COG1205 174 NPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY-RGVQGSEVALLLRRLLRRLR------------------------- 227 (851)
T ss_pred CHHHHHHHhccCcchHHHHHhcCcEEEEecceec-cccchhHHHHHHHHHHHHHh-------------------------
Confidence 999998866544333 334667999999999965 56688888888887743311
Q ss_pred cCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccC
Q psy16310 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD 474 (1493)
Q Consensus 395 ~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1493)
..+.+.|+|+.|||+.+.......+.. ......+ . ..
T Consensus 228 -~~~~~~q~i~~SAT~~np~e~~~~l~~-----------------------~~f~~~v--~-----------------~~ 264 (851)
T COG1205 228 -RYGSPLQIICTSATLANPGEFAEELFG-----------------------RDFEVPV--D-----------------ED 264 (851)
T ss_pred -ccCCCceEEEEeccccChHHHHHHhcC-----------------------Ccceeec--c-----------------CC
Confidence 114568999999999754332211100 0000000 0 00
Q ss_pred CcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecch
Q psy16310 475 EKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSI 554 (1493)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~ 554 (1493)
....-..++....+.... ... .+......-...+...+...+-++|+|+.++
T Consensus 265 g~~~~~~~~~~~~p~~~~---------------------------~~~-~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr 316 (851)
T COG1205 265 GSPRGLRYFVRREPPIRE---------------------------LAE-SIRRSALAELATLAALLVRNGIQTLVFFRSR 316 (851)
T ss_pred CCCCCceEEEEeCCcchh---------------------------hhh-hcccchHHHHHHHHHHHHHcCceEEEEEehh
Confidence 000000000000000000 000 0001111223334445556678999999999
Q ss_pred hhHHHHH----HHHHhcC----CCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCC-Ch
Q psy16310 555 SSVKRLT----QLLTMLK----CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR-TS 625 (1493)
Q Consensus 555 ~~a~~L~----~~L~~~~----~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~-s~ 625 (1493)
..++.+. ..+...+ ..+..++|+|...+|.++...|+.|+..++++|+.++-|+||.+++.||.++.|. +.
T Consensus 317 ~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~ 396 (851)
T COG1205 317 KQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSV 396 (851)
T ss_pred hhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchH
Confidence 9999986 4444444 5677899999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHHHHhccccCCCCCeEEEEecCCcch
Q psy16310 626 EIYIHRSGRTARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 626 ~~yiQR~GRagR~g~~G~~i~l~~~~e~~ 654 (1493)
.+|+||+||+||.++.+..+.++..+...
T Consensus 397 ~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d 425 (851)
T COG1205 397 LSFRQRAGRAGRRGQESLVLVVLRSDPLD 425 (851)
T ss_pred HHHHHhhhhccCCCCCceEEEEeCCCccc
Confidence 99999999999999888888777744443
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=334.41 Aligned_cols=347 Identities=22% Similarity=0.277 Sum_probs=236.0
Q ss_pred CCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 787 g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
+.-+|+++|..++..++. + |+++++|||+|||++|++++...+.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~-~-n~lv~~ptG~GKT~~a~~~i~~~l~---------------------------------- 55 (773)
T PRK13766 12 NTIEARLYQQLLAATALK-K-NTLVVLPTGLGKTAIALLVIAERLH---------------------------------- 55 (773)
T ss_pred CcCCccHHHHHHHHHHhc-C-CeEEEcCCCccHHHHHHHHHHHHHH----------------------------------
Confidence 445889999999976653 3 9999999999999999998887651
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcC
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~ 946 (1493)
..+.++|||+||++|+.|+.+.++.++...+..+..++|+.+....... ....+|+|+||+.+...+..+..
T Consensus 56 -------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~-~~~~~iiv~T~~~l~~~l~~~~~ 127 (773)
T PRK13766 56 -------KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAEL-WEKAKVIVATPQVIENDLIAGRI 127 (773)
T ss_pred -------hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHH-HhCCCEEEECHHHHHHHHHcCCC
Confidence 1234799999999999999999999765555688888888876654333 34569999999999887765543
Q ss_pred ccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCc--Ccccc-----
Q psy16310 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS--KSKKV----- 1019 (1493)
Q Consensus 947 ~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~--~~~~~----- 1019 (1493)
.+.++++|||||||++........+...+... .....+++||||+............... .....
T Consensus 128 ---~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~-----~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~ 199 (773)
T PRK13766 128 ---SLEDVSLLIFDEAHRAVGNYAYVYIAERYHED-----AKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDP 199 (773)
T ss_pred ---ChhhCcEEEEECCccccccccHHHHHHHHHhc-----CCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCCh
Confidence 35578999999999987654333333222211 2456799999998543221111000000 00000
Q ss_pred ---------------cCCCchhHHHHhH--------------hccCCCcE--Eecc--------------cccc------
Q psy16310 1020 ---------------SKGDPSIKRLQDL--------------LNIKSPKI--VDLT--------------EKIG------ 1048 (1493)
Q Consensus 1020 ---------------~~~~~~~~~l~~~--------------~~~~~~~~--~~~~--------------~~~~------ 1048 (1493)
......+..+... .+...+.. +... ....
T Consensus 200 ~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 279 (773)
T PRK13766 200 DVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAI 279 (773)
T ss_pred hHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHH
Confidence 0000000000000 00000000 0000 0000
Q ss_pred ---------------------------------cc-------------------ccceeeEEEecccchhhHHHHHHHh-
Q psy16310 1049 ---------------------------------IT-------------------KTLTESKILCKHDEKDSYLYYFILQ- 1075 (1493)
Q Consensus 1049 ---------------------------------~~-------------------~~~~~~~~~~~~~~k~~~l~~~l~~- 1075 (1493)
.. ..+...........|...|..++..
T Consensus 280 ~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~ 359 (773)
T PRK13766 280 SILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQ 359 (773)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHH
Confidence 00 0000000001123455555555543
Q ss_pred ----CCCcEEEEecchhhHHHHHHHHHhcCCCccccccC--------CCHHHHHHHHHHHhcCCCCeEEeehhhhccccC
Q psy16310 1076 ----HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS--------MNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143 (1493)
Q Consensus 1076 ----~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~--------m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDi 1143 (1493)
.++++||||+++.+|+.|+..|...|+.+..+||. |++.+|..++++|++|+.+|||||+++++|+|+
T Consensus 360 ~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi 439 (773)
T PRK13766 360 LGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDI 439 (773)
T ss_pred HhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCc
Confidence 36799999999999999999999999998888886 999999999999999999999999999999999
Q ss_pred CCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1144 p~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
|++++||+||+|.+...|+||+||+||.| .|.+++++..+..
T Consensus 440 ~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~ 481 (773)
T PRK13766 440 PSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTR 481 (773)
T ss_pred ccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCCh
Confidence 99999999999999999999999999986 4888988876654
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=310.97 Aligned_cols=380 Identities=20% Similarity=0.282 Sum_probs=281.7
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHH
Q psy16310 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 852 (1493)
Q Consensus 773 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 852 (1493)
..+|.+-..++. |...+.++|....+.++....++++|||||+|||.++++-|++.+-......
T Consensus 294 selP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~d-------------- 357 (1674)
T KOG0951|consen 294 SELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRED-------------- 357 (1674)
T ss_pred cCCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccc--------------
Confidence 345666666664 7777999999999999988899999999999999999999999885433210
Q ss_pred HHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEE
Q psy16310 853 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVA 932 (1493)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~ 932 (1493)
.+......+++|++|+.+||..+...|.+....++++|.-.+|+.....+.- .+..|+||
T Consensus 358 -----------------gs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~ 417 (1674)
T KOG0951|consen 358 -----------------GSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI---EETQVIVT 417 (1674)
T ss_pred -----------------cceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhh---hcceeEEe
Confidence 0122345689999999999999999999999999999999999876443322 24589999
Q ss_pred CcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhccc--CCCCCceEEEEecccccchHhHHhhh
Q psy16310 933 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT--ETSQPRQTFVFSATLTHSLKNSLNLK 1010 (1493)
Q Consensus 933 TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~--~~~~~~q~ll~SATl~~~~~~~~~~~ 1010 (1493)
||+. ||.+.+........+-++++|+||.| |+.+..++.++.|+.+.... .+......+++|||+|+-..-
T Consensus 418 TPEK-~DiITRk~gdraY~qlvrLlIIDEIH-LLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV----- 490 (1674)
T KOG0951|consen 418 TPEK-WDIITRKSGDRAYEQLVRLLIIDEIH-LLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDV----- 490 (1674)
T ss_pred ccch-hhhhhcccCchhHHHHHHHHhhhhhh-hcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhh-----
Confidence 9999 78887765555555568899999999 56667888998888876542 344578899999999954221
Q ss_pred ccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccc-------hhhHHHHHHHhC--CCcEE
Q psy16310 1011 KGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE-------KDSYLYYFILQH--PGRTL 1081 (1493)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------k~~~l~~~l~~~--~~~~I 1081 (1493)
...+....+.++..... ..+-.+.+.++-+...+ -....+.-+..+ .+++|
T Consensus 491 -------------------~~Fl~v~~~glf~fd~s-yRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVL 550 (1674)
T KOG0951|consen 491 -------------------ASFLRVDPEGLFYFDSS-YRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVL 550 (1674)
T ss_pred -------------------HHHhccCcccccccCcc-cCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEE
Confidence 11112222222222111 12223333333322211 122344444444 46899
Q ss_pred EEecchhhHHHHHHHHHhc-------------------------------------CCCccccccCCCHHHHHHHHHHHh
Q psy16310 1082 VFCNSISSVKRLTQLLTML-------------------------------------KCSPLPLHASMNQRQRLKNLDRFR 1124 (1493)
Q Consensus 1082 VF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~lhg~m~~~~R~~~~~~F~ 1124 (1493)
|||.+++.+-..|..++.. .+++++||+||+..+|..+.+.|+
T Consensus 551 VFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~ 630 (1674)
T KOG0951|consen 551 VFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFA 630 (1674)
T ss_pred EEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHh
Confidence 9999999988888777521 357788999999999999999999
Q ss_pred cCCCCeEEeehhhhccccCCCccEEEE----ecC------CCChhHHHHHHhccCCCC--CCCeEEEEecCCCHHHHHHH
Q psy16310 1125 DQNNSILLATDVAARGLDIPGIEHVIH----YHV------PRTSEIYIHRSGRTARAN--NEGLTLVLIESDEIPLYIKM 1192 (1493)
Q Consensus 1125 ~g~~~VLVaTdv~~~GiDip~v~~VI~----~d~------p~s~~~yiqr~GR~gR~g--~~G~~i~l~~~~e~~~~~~~ 1192 (1493)
.|.++|||+|-.+++|+++|+.+++|- ||+ +.++.+-+||.||+||.+ ..|.++++-...|...+..+
T Consensus 631 ~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~ 710 (1674)
T KOG0951|consen 631 DGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSL 710 (1674)
T ss_pred cCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHh
Confidence 999999999999999999999888883 665 357889999999999984 56888888888898888887
Q ss_pred HHhccccCCCCCCCCChHHHHHHHHHHHHHH
Q psy16310 1193 FNSLEKKVDLPDFPIDESVLSLIKKRIDLAK 1223 (1493)
Q Consensus 1193 ~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~ 1223 (1493)
++. .+|+++..+..+-.-+++..
T Consensus 711 mn~--------qLpiesq~~~rl~d~lnaei 733 (1674)
T KOG0951|consen 711 MNQ--------QLPIESQFVSRLADCLNAEI 733 (1674)
T ss_pred hhh--------cCCChHHHHHHhhhhhhhhh
Confidence 765 67899887776666555443
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=299.18 Aligned_cols=363 Identities=19% Similarity=0.227 Sum_probs=256.8
Q ss_pred CCCHHHHHHH-HHCCCCCCcHHHHhhHHHhhcc-----CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 774 NIPETIIRAL-YQKGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 774 ~l~~~l~~~l-~~~g~~~pt~iQ~~~i~~~l~~-----~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
.....+++.+ ..+.| ++|..|..++..+..+ ..+-+++|..|||||+++++.++..+
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai---------------- 308 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI---------------- 308 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH----------------
Confidence 3444555554 55566 7999999999876532 24679999999999999999999876
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH---Hhc
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---ILN 924 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~---~l~ 924 (1493)
..|.++..++||--||.|+++.+.+++..++++|..++|......... .+.
T Consensus 309 --------------------------~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~ 362 (677)
T COG1200 309 --------------------------EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLA 362 (677)
T ss_pred --------------------------HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHh
Confidence 345689999999999999999999999999999999999876554333 333
Q ss_pred -CCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCC-CceEEEEecccccc
Q psy16310 925 -KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ-PRQTFVFSATLTHS 1002 (1493)
Q Consensus 925 -~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~-~~q~ll~SATl~~~ 1002 (1493)
...+|+|||+.-+.+- -.|+++.++|+||-|| |+-.-+..+..- .. ...+++||||+-+.
T Consensus 363 ~G~~~ivVGTHALiQd~--------V~F~~LgLVIiDEQHR-----FGV~QR~~L~~K-----G~~~Ph~LvMTATPIPR 424 (677)
T COG1200 363 SGEIDIVVGTHALIQDK--------VEFHNLGLVIIDEQHR-----FGVHQRLALREK-----GEQNPHVLVMTATPIPR 424 (677)
T ss_pred CCCCCEEEEcchhhhcc--------eeecceeEEEEecccc-----ccHHHHHHHHHh-----CCCCCcEEEEeCCCchH
Confidence 3489999998765433 2478899999999999 443444444332 12 46799999997533
Q ss_pred hHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEecccccccc-ccceeeEEEecccchhhHHHHHHHh---CCC
Q psy16310 1003 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT-KTLTESKILCKHDEKDSYLYYFILQ---HPG 1078 (1493)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~l~~~l~~---~~~ 1078 (1493)
..... ..+ .-.++........ ..+.. .+-..++...++.++.. .+.
T Consensus 425 TLAlt--~fg-------------------------DldvS~IdElP~GRkpI~T---~~i~~~~~~~v~e~i~~ei~~Gr 474 (677)
T COG1200 425 TLALT--AFG-------------------------DLDVSIIDELPPGRKPITT---VVIPHERRPEVYERIREEIAKGR 474 (677)
T ss_pred HHHHH--Hhc-------------------------cccchhhccCCCCCCceEE---EEeccccHHHHHHHHHHHHHcCC
Confidence 22111 000 0001111111111 11211 12222444444555443 478
Q ss_pred cEEEEecchh--------hHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccE
Q psy16310 1079 RTLVFCNSIS--------SVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 1148 (1493)
Q Consensus 1079 ~~IVF~~s~~--------~~~~l~~~L~~~--~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~ 1148 (1493)
++.|.|+-++ .|..++..|+.. ++.+..+||.|+..++..+|.+|++|+++|||||.|++.|||+|+.++
T Consensus 475 QaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATv 554 (677)
T COG1200 475 QAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATV 554 (677)
T ss_pred EEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeE
Confidence 9999999765 455667777744 556899999999999999999999999999999999999999999999
Q ss_pred EEEecCCC-ChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q psy16310 1149 VIHYHVPR-TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEY 1227 (1493)
Q Consensus 1149 VI~~d~p~-s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~ 1227 (1493)
.|.+++-+ ...+.-|-.||+||.+.+++|++++.+.....- ++|+.. +..
T Consensus 555 MVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a--------------------------~~RL~i---m~~ 605 (677)
T COG1200 555 MVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVA--------------------------KQRLKI---MRE 605 (677)
T ss_pred EEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhH--------------------------HHHHHH---HHh
Confidence 99999876 456666677999999999999999977652211 111111 112
Q ss_pred HHHhhhccCCchHHHHHhhhhhhcccccc
Q psy16310 1228 LESKIKKNRPDNWLHRSGRTARANNEGLT 1256 (1493)
Q Consensus 1228 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1256 (1493)
-..++..+..|.-+|+-|...+..|+|.+
T Consensus 606 t~DGF~IAE~DLklRGpGe~lG~rQSG~~ 634 (677)
T COG1200 606 TTDGFVIAEEDLKLRGPGELLGTRQSGLP 634 (677)
T ss_pred cCCcceehhhhHhccCCccccCCcccCCc
Confidence 22345555677888999999999999943
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=310.95 Aligned_cols=321 Identities=18% Similarity=0.187 Sum_probs=211.4
Q ss_pred CCCcHHHHhhHHHhhcc--CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 789 KTPTKIQSMVMPSALLA--RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~--~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
..+|+.|.++++.++.+ ++++++.|+||||||.+|+.++...+.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~---------------------------------- 188 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA---------------------------------- 188 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH----------------------------------
Confidence 36899999999866542 578999999999999999988776552
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH----HhcCCCcEEEECcHHHHHHHH
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR----ILNKCPHILVATPGRLWEFIQ 942 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~----~l~~~~~IlV~TP~rl~~~l~ 942 (1493)
.+.++|||+||++|+.|+++.+++.+ +.++..++|+.+...... .....++|+||||+.+.
T Consensus 189 --------~g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~---- 253 (679)
T PRK05580 189 --------QGKQALVLVPEIALTPQMLARFRARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF---- 253 (679)
T ss_pred --------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc----
Confidence 23479999999999999999998753 578999999988755433 23346799999998863
Q ss_pred hCcCccccccceeEEEecccchhccCCC---hhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccc
Q psy16310 943 LGHFHLTELYKINYLVIDETDRMIESGH---FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKV 1019 (1493)
Q Consensus 943 ~~~~~~~~l~~l~~lVlDEah~ll~~~~---~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~ 1019 (1493)
..+.++++||+||+|....++. .-....+.... ....+.+++++|||++......+. .+.......
T Consensus 254 ------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~r---a~~~~~~~il~SATps~~s~~~~~--~g~~~~~~l 322 (679)
T PRK05580 254 ------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVR---AKLENIPVVLGSATPSLESLANAQ--QGRYRLLRL 322 (679)
T ss_pred ------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHH---hhccCCCEEEEcCCCCHHHHHHHh--ccceeEEEe
Confidence 2366889999999998654322 11122221111 113578999999998744332221 110000000
Q ss_pred cCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH---hCCCcEEEEecch---------
Q psy16310 1020 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL---QHPGRTLVFCNSI--------- 1087 (1493)
Q Consensus 1020 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~---~~~~~~IVF~~s~--------- 1087 (1493)
.... ....+....+++..... .. .....-...++..+. ..+.++|||+|++
T Consensus 323 ~~r~-------~~~~~p~v~~id~~~~~------~~----~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~ 385 (679)
T PRK05580 323 TKRA-------GGARLPEVEIIDMRELL------RG----ENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCR 385 (679)
T ss_pred cccc-------ccCCCCeEEEEechhhh------hh----cccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhh
Confidence 0000 00000000111110000 00 000000112222222 3355777777652
Q ss_pred ---------------------------------------------------hhHHHHHHHHHhc--CCCccccccCCCH-
Q psy16310 1088 ---------------------------------------------------SSVKRLTQLLTML--KCSPLPLHASMNQ- 1113 (1493)
Q Consensus 1088 ---------------------------------------------------~~~~~l~~~L~~~--~~~~~~lhg~m~~- 1113 (1493)
..++.+++.|... +.++..+|+++.+
T Consensus 386 ~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~ 465 (679)
T PRK05580 386 DCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRR 465 (679)
T ss_pred hCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEecccccc
Confidence 2456778888776 7788999999974
Q ss_pred -HHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEec--CCCC----------hhHHHHHHhccCCCCCCCeEEEE
Q psy16310 1114 -RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH--VPRT----------SEIYIHRSGRTARANNEGLTLVL 1180 (1493)
Q Consensus 1114 -~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d--~p~s----------~~~yiqr~GR~gR~g~~G~~i~l 1180 (1493)
.+++.+++.|++|+.+|||+|+++++|+|+|+|++|+.+| .+-+ ...|+|++||+||++..|.+++.
T Consensus 466 ~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiq 545 (679)
T PRK05580 466 KGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQ 545 (679)
T ss_pred chhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEE
Confidence 5789999999999999999999999999999999996554 4432 36799999999999999999987
Q ss_pred ecCCCH
Q psy16310 1181 IESDEI 1186 (1493)
Q Consensus 1181 ~~~~e~ 1186 (1493)
....+.
T Consensus 546 T~~p~~ 551 (679)
T PRK05580 546 TYHPEH 551 (679)
T ss_pred eCCCCC
Confidence 654443
|
|
| >KOG0351|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-30 Score=322.05 Aligned_cols=337 Identities=20% Similarity=0.239 Sum_probs=246.5
Q ss_pred HHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHH
Q psy16310 164 RALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELE 243 (1493)
Q Consensus 164 ~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1493)
-.....|+..+++-|.++|. +++.|+|+++.+|||.||+++|.||++-
T Consensus 255 ~l~~~Fg~~~FR~~Q~eaI~-~~l~Gkd~fvlmpTG~GKSLCYQlPA~l------------------------------- 302 (941)
T KOG0351|consen 255 LLKEVFGHKGFRPNQLEAIN-ATLSGKDCFVLMPTGGGKSLCYQLPALL------------------------------- 302 (941)
T ss_pred HHHHHhccccCChhHHHHHH-HHHcCCceEEEeecCCceeeEeeccccc-------------------------------
Confidence 33455699999999999998 7779999999999999999999999861
Q ss_pred HhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHH---HHHhcC---CCCEEEeCc
Q psy16310 244 EESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ---LRILNK---CPHILVATP 317 (1493)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~---~~~l~~---~~~IiV~TP 317 (1493)
.++..|||.|.+.|+..|...+.. .+|....+.++.....+ ++.+.. ..+|+..||
T Consensus 303 --------------~~gitvVISPL~SLm~DQv~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 303 --------------LGGVTVVISPLISLMQDQVTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred --------------cCCceEEeccHHHHHHHHHHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 223699999999999988887733 37889999999887644 333333 468999999
Q ss_pred HHHHHHHHcCCcccccccc---ccEEEEecCchhhhcC--ChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhc
Q psy16310 318 GRLWEFIQLGHFHLTELYK---INYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392 (1493)
Q Consensus 318 ~~L~~~l~~~~~~~~~l~~---i~~lViDEAh~ll~~~--~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (1493)
+.+...-... ..+..|.. +.++||||||+...|+ |.+.+..+......
T Consensus 365 E~v~~~~~l~-~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~-------------------------- 417 (941)
T KOG0351|consen 365 EKVVASEGLL-ESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIR-------------------------- 417 (941)
T ss_pred HHhhcccchh-hHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhh--------------------------
Confidence 9886422110 01112333 8999999999999986 56655554433221
Q ss_pred cccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhc
Q psy16310 393 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 472 (1493)
Q Consensus 393 ~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1493)
.+...++.++||.+..+..-+ .+.+++..+.+.. .
T Consensus 418 -----~~~vP~iALTATAT~~v~~DI----------------------i~~L~l~~~~~~~------------------~ 452 (941)
T KOG0351|consen 418 -----FPGVPFIALTATATERVREDV----------------------IRSLGLRNPELFK------------------S 452 (941)
T ss_pred -----CCCCCeEEeehhccHHHHHHH----------------------HHHhCCCCcceec------------------c
Confidence 122689999999997765432 1222222222100 0
Q ss_pred cCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhh--CCCcEEEE
Q psy16310 473 HDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ--HPGRTLVF 550 (1493)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~IIF 550 (1493)
...+.. ++|-+ ...........+...... ....+|||
T Consensus 453 sfnR~N-L~yeV----------------------------------------~~k~~~~~~~~~~~~~~~~~~~~s~IIY 491 (941)
T KOG0351|consen 453 SFNRPN-LKYEV----------------------------------------SPKTDKDALLDILEESKLRHPDQSGIIY 491 (941)
T ss_pred cCCCCC-ceEEE----------------------------------------EeccCccchHHHHHHhhhcCCCCCeEEE
Confidence 000000 00000 000000111111122222 24689999
Q ss_pred ecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHH
Q psy16310 551 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630 (1493)
Q Consensus 551 ~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQ 630 (1493)
|.++.+|+.++..|...++++..||+||+..+|..+...|..++++|+|||=.++.|||.|+|+.||||.+|.+.+.|+|
T Consensus 492 C~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQ 571 (941)
T KOG0351|consen 492 CLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQ 571 (941)
T ss_pred eCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccCCCCCeEEEEecCCcchhhhhhhhhh
Q psy16310 631 RSGRTARANNEGLTVVLIESDEIPLKTKFNLQE 663 (1493)
Q Consensus 631 R~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~~ 663 (1493)
-+|||||.|...+|++||...|......+....
T Consensus 572 E~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 572 EAGRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred hccccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 999999999999999999999888777764433
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=310.75 Aligned_cols=329 Identities=15% Similarity=0.147 Sum_probs=218.4
Q ss_pred CCCcHHHHhhHHHhhccC--CcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 789 KTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~--~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
..++|+|.+++..++..| +..++++|||+|||++.+..+. .+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l----------------------------------- 297 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV----------------------------------- 297 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-----------------------------------
Confidence 468999999998766555 3789999999999999765433 22
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcC
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~ 946 (1493)
+..+|||||+.+|+.||.+.|.++....+..+..++|+.... .....+|+|+|...+.....+...
T Consensus 298 ---------~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~ 363 (732)
T TIGR00603 298 ---------KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYE 363 (732)
T ss_pred ---------CCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchh
Confidence 124999999999999999999998655556677777753221 112358999999877533221100
Q ss_pred ---ccccc--cceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH--HhhhccCcCcccc
Q psy16310 947 ---HLTEL--YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS--LNLKKGQSKSKKV 1019 (1493)
Q Consensus 947 ---~~~~l--~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~--~~~~~~~~~~~~~ 1019 (1493)
.+..+ ..+++||+||||++.. ..+..++..+. ....+++|||+.+..... +....+. .+
T Consensus 364 ~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~l~------a~~RLGLTATP~ReD~~~~~L~~LiGP----~v 429 (732)
T TIGR00603 364 SEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTIVQ------AHCKLGLTATLVREDDKITDLNFLIGP----KL 429 (732)
T ss_pred hhHHHHHhccccCCEEEEEccccccH----HHHHHHHHhcC------cCcEEEEeecCcccCCchhhhhhhcCC----ee
Confidence 01112 3578999999999854 34555665552 245799999997543221 1100110 00
Q ss_pred cCCCchhHHHHhHhccCCCcEEec----cccc----cccccceeeEEEecccchhhHHHHHHHh---CCCcEEEEecchh
Q psy16310 1020 SKGDPSIKRLQDLLNIKSPKIVDL----TEKI----GITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSIS 1088 (1493)
Q Consensus 1020 ~~~~~~~~~l~~~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IVF~~s~~ 1088 (1493)
....+..+...-.+.......+ .... .....-...........|...+..++.. .+.++||||+++.
T Consensus 430 --ye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~ 507 (732)
T TIGR00603 430 --YEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVF 507 (732)
T ss_pred --eecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHH
Confidence 0112222322222222222111 0000 0000000001112334555555445543 4679999999999
Q ss_pred hHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC-CCCeEEeehhhhccccCCCccEEEEecCC-CChhHHHHHHh
Q psy16310 1089 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ-NNSILLATDVAARGLDIPGIEHVIHYHVP-RTSEIYIHRSG 1166 (1493)
Q Consensus 1089 ~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g-~~~VLVaTdv~~~GiDip~v~~VI~~d~p-~s~~~yiqr~G 1166 (1493)
.+..++..| .+..+||++++.+|.+++++|+.| .+++||+|+++.+|||+|++++||+++.| .|...|+||+|
T Consensus 508 ~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlG 582 (732)
T TIGR00603 508 ALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLG 582 (732)
T ss_pred HHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhc
Confidence 999998887 245689999999999999999975 78999999999999999999999999998 59999999999
Q ss_pred ccCCCCCCCeE-------EEEecCCCHHH
Q psy16310 1167 RTARANNEGLT-------LVLIESDEIPL 1188 (1493)
Q Consensus 1167 R~gR~g~~G~~-------i~l~~~~e~~~ 1188 (1493)
|++|.+..|.+ |.|++++..+.
T Consensus 583 RilR~~~~~~~~~~~A~fY~lVs~dT~E~ 611 (732)
T TIGR00603 583 RILRAKKGSDAEEYNAFFYSLVSKDTQEM 611 (732)
T ss_pred ccccCCCCCccccccceEEEEecCCchHH
Confidence 99999876665 88888876543
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-29 Score=294.66 Aligned_cols=310 Identities=21% Similarity=0.207 Sum_probs=188.4
Q ss_pred HHHhhhhhhhccCC--cEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhh
Q psy16310 177 IQSMVMPSALLARK--DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 254 (1493)
Q Consensus 177 iQ~~~i~~~l~~~~--dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1493)
+|.++++ ++.++. +++++||||||||.+|++|++..
T Consensus 1 hQ~~~~~-~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~----------------------------------------- 38 (357)
T TIGR03158 1 HQVATFE-ALQSKDADIIFNTAPTGAGKTLAWLTPLLHG----------------------------------------- 38 (357)
T ss_pred CHHHHHH-HHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------------------------------------
Confidence 5999998 454544 37889999999999999998731
Q ss_pred cccCceEEEEEcccHHHHHHHHHHHHHhcCC----CCeEEEEEEcCCCHHHH-H-------------------HHhcCCC
Q psy16310 255 KTRNKLYALILAPTRELAIQVQNHILDAGKY----TPVKVACVVGGMSTEKQ-L-------------------RILNKCP 310 (1493)
Q Consensus 255 ~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~----~~i~v~~~~G~~~~~~~-~-------------------~~l~~~~ 310 (1493)
..+++|++||++|+.|+++.+..+... .++.+..+.|.+..... + ......+
T Consensus 39 ----~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p 114 (357)
T TIGR03158 39 ----ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTP 114 (357)
T ss_pred ----CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCC
Confidence 124899999999999999998887632 35677777776332200 0 1112467
Q ss_pred CEEEeCcHHHHHHHHcCCccc-----cccccccEEEEecCchhhhcCChh-----hHHHHHHhhccccCCCccccccccC
Q psy16310 311 HILVATPGRLWEFIQLGHFHL-----TELYKINYLVIDETDRMIESGHFP-----ELKNILDRVTMTETSQPRQTMIESG 380 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~-----~~l~~i~~lViDEAh~ll~~~~~~-----~l~~il~~l~~~~~~~~~~~~~~~~ 380 (1493)
+|+++||+.|..++....... ..+.++++|||||+|.+-.++... ....++...
T Consensus 115 ~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~---------------- 178 (357)
T TIGR03158 115 IILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFF---------------- 178 (357)
T ss_pred CEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhh----------------
Confidence 899999999976664322111 125689999999999875332211 111111111
Q ss_pred CcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhcc
Q psy16310 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGI 460 (1493)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (1493)
....+++++|||+++.+...+..............+... ..
T Consensus 179 -----------------~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~----------------------~~ 219 (357)
T TIGR03158 179 -----------------ECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKY----------------------QF 219 (357)
T ss_pred -----------------hcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCccc----------------------cc
Confidence 112589999999998766554311000000000000000 00
Q ss_pred ccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhh-ccCCccccccccccccccccccccccccCchhh---HH
Q psy16310 461 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLN-IKSPKIVDLTEKIGITKTLTESKILCKHDEKDS---YL 536 (1493)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~---~l 536 (1493)
. ..+ +....... ...+ +.......... ....+.. .+
T Consensus 220 ~------------------------~~~-----~~~~~~~~~~~~~----------~~~~i~~~~~~-~~~~~~~~l~~l 259 (357)
T TIGR03158 220 P------------------------DNP-----ELEADNKTQSFRP----------VLPPVELELIP-APDFKEEELSEL 259 (357)
T ss_pred C------------------------CCh-----hhhccccccccce----------eccceEEEEEe-CCchhHHHHHHH
Confidence 0 000 00000000 0000 00000000000 0011111 11
Q ss_pred H----HHHhh-CCCcEEEEecchhhHHHHHHHHHhcC--CCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCC
Q psy16310 537 Y----YFILQ-HPGRTLVFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 609 (1493)
Q Consensus 537 ~----~~l~~-~~~~~IIF~~s~~~a~~L~~~L~~~~--~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlD 609 (1493)
. ..+.. .++++||||+|+..++.++..|+..+ +.+..+||.+++.+|.++ ++..|||||++++||||
T Consensus 260 ~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiD 333 (357)
T TIGR03158 260 AEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVD 333 (357)
T ss_pred HHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccC
Confidence 1 22222 35689999999999999999999764 567889999999998654 47899999999999999
Q ss_pred CCCCcEEEEecCCCChHHHHHHHhccc
Q psy16310 610 IPGIEHVIHYHVPRTSEIYIHRSGRTA 636 (1493)
Q Consensus 610 ip~v~~VI~yd~P~s~~~yiQR~GRag 636 (1493)
||.+ +|| ++ |.+..+|+||+||||
T Consensus 334 i~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 334 FKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9987 666 56 899999999999987
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-29 Score=321.06 Aligned_cols=297 Identities=22% Similarity=0.290 Sum_probs=199.0
Q ss_pred hhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCC
Q psy16310 797 MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 876 (1493)
Q Consensus 797 ~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (1493)
..|..++.+++.++++|+||||||. .+|.+...... ...
T Consensus 80 ~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~---------------------------------------g~~ 118 (1294)
T PRK11131 80 QDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR---------------------------------------GVK 118 (1294)
T ss_pred HHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC---------------------------------------CCC
Confidence 3444577777788999999999999 57844321110 011
Q ss_pred eEEEEEcc----cHHHHHHHHHHHHH-hhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccc
Q psy16310 877 LYALILAP----TRELAIQVQNHILD-AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951 (1493)
Q Consensus 877 ~~~lil~P----TreLa~Q~~~~~~~-~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l 951 (1493)
..+++.-| +++||.|+++.+.. ++...|..+ .. ..+ ...+++|+|+|||+|++.+.... .+
T Consensus 119 g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~v----rf---~~~---~s~~t~I~v~TpG~LL~~l~~d~----~L 184 (1294)
T PRK11131 119 GLIGHTQPRRLAARTVANRIAEELETELGGCVGYKV----RF---NDQ---VSDNTMVKLMTDGILLAEIQQDR----LL 184 (1294)
T ss_pred CceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceee----cC---ccc---cCCCCCEEEEChHHHHHHHhcCC----cc
Confidence 12333345 67899999988865 443333222 11 111 13567999999999999987543 37
Q ss_pred cceeEEEecccc-hhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHH
Q psy16310 952 YKINYLVIDETD-RMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQ 1030 (1493)
Q Consensus 952 ~~l~~lVlDEah-~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1030 (1493)
.++++||||||| ++++.+|... ++..+.. ..++.|+++||||++.. .+...+.
T Consensus 185 s~~~~IIIDEAHERsLn~DfLLg---~Lk~lL~--~rpdlKvILmSATid~e--~fs~~F~------------------- 238 (1294)
T PRK11131 185 MQYDTIIIDEAHERSLNIDFILG---YLKELLP--RRPDLKVIITSATIDPE--RFSRHFN------------------- 238 (1294)
T ss_pred ccCcEEEecCccccccccchHHH---HHHHhhh--cCCCceEEEeeCCCCHH--HHHHHcC-------------------
Confidence 789999999999 6888887532 2222211 12468999999999732 2221110
Q ss_pred hHhccCCCcEEeccccccccccceeeEEEeccc------chhhHHHHHH----HhCCCcEEEEecchhhHHHHHHHHHhc
Q psy16310 1031 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHD------EKDSYLYYFI----LQHPGRTLVFCNSISSVKRLTQLLTML 1100 (1493)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~k~~~l~~~l----~~~~~~~IVF~~s~~~~~~l~~~L~~~ 1100 (1493)
+..++.+.... ..+...+...... +....++..+ ...++.+||||++...++.++..|...
T Consensus 239 ------~apvI~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~ 309 (1294)
T PRK11131 239 ------NAPIIEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKL 309 (1294)
T ss_pred ------CCCEEEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhc
Confidence 11122222111 1122222222111 1122222221 234688999999999999999999987
Q ss_pred CCC---ccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEec---------------CC---CChh
Q psy16310 1101 KCS---PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH---------------VP---RTSE 1159 (1493)
Q Consensus 1101 ~~~---~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d---------------~p---~s~~ 1159 (1493)
++. +.++||+|++.+|..+++. .|..+|||||+++++|||||+|++||+++ +| .|..
T Consensus 310 ~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSka 387 (1294)
T PRK11131 310 NLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQA 387 (1294)
T ss_pred CCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHh
Confidence 765 6789999999999999886 47889999999999999999999999986 33 4568
Q ss_pred HHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1160 IYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1160 ~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
+|+||+|||||. ..|.||.|+++.+.
T Consensus 388 sa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 388 SANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred hHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 999999999999 69999999987653
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-29 Score=318.57 Aligned_cols=111 Identities=28% Similarity=0.465 Sum_probs=97.9
Q ss_pred hCCCcEEEEecchhhHHHHHHHHHhcCCC---ccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE
Q psy16310 542 QHPGRTLVFCNSISSVKRLTQLLTMLKCS---PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618 (1493)
Q Consensus 542 ~~~~~~IIF~~s~~~a~~L~~~L~~~~~~---~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~ 618 (1493)
..++.+||||++..+++.+++.|...++. +..+||+|++.+|.++++. .|..+||||||++++|||||+|++||+
T Consensus 284 ~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID 361 (1294)
T PRK11131 284 EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVID 361 (1294)
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEE
Confidence 34688999999999999999999987664 6789999999999999886 588999999999999999999999999
Q ss_pred ec---------------CC---CChHHHHHHHhccccCCCCCeEEEEecCCcchh
Q psy16310 619 YH---------------VP---RTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 619 yd---------------~P---~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
++ +| .|..+|+||+|||||. .+|.||.||++++...
T Consensus 362 ~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 362 PGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLS 415 (1294)
T ss_pred CCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHh
Confidence 86 34 4557899999999999 5999999999876543
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=299.99 Aligned_cols=339 Identities=14% Similarity=0.153 Sum_probs=212.0
Q ss_pred CCChHHHHhhhhhhhccC--CcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 172 KTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 172 ~~pt~iQ~~~i~~~l~~~--~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
..++|||.+++..++.++ +..++++|||+|||++.+..+. .+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l----------------------------------- 297 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV----------------------------------- 297 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-----------------------------------
Confidence 368999999998665444 3789999999999999765432 22
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCC-
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH- 328 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~- 328 (1493)
+.++|||||+..|+.|+.+.|..+.......+..++|+.... ......|+|+|++.+........
T Consensus 298 ---------~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~ 363 (732)
T TIGR00603 298 ---------KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYE 363 (732)
T ss_pred ---------CCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchh
Confidence 124999999999999999999988655556677777764321 11235899999998753221110
Q ss_pred --cccccc--ccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEE
Q psy16310 329 --FHLTEL--YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTF 404 (1493)
Q Consensus 329 --~~~~~l--~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i 404 (1493)
..+..| ..+++||+||||++-. .....++..+. ....+
T Consensus 364 ~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~l~----------------------------------a~~RL 405 (732)
T TIGR00603 364 SEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTIVQ----------------------------------AHCKL 405 (732)
T ss_pred hhHHHHHhccccCCEEEEEccccccH----HHHHHHHHhcC----------------------------------cCcEE
Confidence 001112 2578999999999843 34445554431 12479
Q ss_pred EEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHH
Q psy16310 405 VFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 484 (1493)
Q Consensus 405 l~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1493)
++|||+.+.-... ..+..++ .+......-. .+.....+.+.....
T Consensus 406 GLTATP~ReD~~~--------------------~~L~~Li---GP~vye~~~~-----eLi~~G~LA~~~~~e------- 450 (732)
T TIGR00603 406 GLTATLVREDDKI--------------------TDLNFLI---GPKLYEANWM-----ELQKKGFIANVQCAE------- 450 (732)
T ss_pred EEeecCcccCCch--------------------hhhhhhc---CCeeeecCHH-----HHHhCCccccceEEE-------
Confidence 9999996432110 0011111 1111000000 000000000000000
Q ss_pred hcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHH
Q psy16310 485 LQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLT 561 (1493)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~ 561 (1493)
...+.. .+........... ...........|...+..++.. .+.++||||.+...+..++
T Consensus 451 v~v~~t--~~~~~~yl~~~~~---------------~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a 513 (732)
T TIGR00603 451 VWCPMT--PEFYREYLRENSR---------------KRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYA 513 (732)
T ss_pred EEecCC--HHHHHHHHHhcch---------------hhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHH
Confidence 000000 0000000000000 0000011123455555555543 4579999999999988888
Q ss_pred HHHHhcCCCccccccCCCHHHHHHHHHHHhcC-CCeEEEEechhhccCCCCCCcEEEEecCC-CChHHHHHHHhccccCC
Q psy16310 562 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ-NNSILLATDVAARGLDIPGIEHVIHYHVP-RTSEIYIHRSGRTARAN 639 (1493)
Q Consensus 562 ~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g-~~~VLVaTdv~~rGlDip~v~~VI~yd~P-~s~~~yiQR~GRagR~g 639 (1493)
..|. +..+||.+++.+|.++++.|+.| .+++||+|+++.+|||+|++++||+++.| .|...|+||+||++|.+
T Consensus 514 ~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~ 588 (732)
T TIGR00603 514 IKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAK 588 (732)
T ss_pred HHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCC
Confidence 8772 45689999999999999999975 88999999999999999999999999998 59999999999999998
Q ss_pred CCCeE-------EEEecCCcchh
Q psy16310 640 NEGLT-------VVLIESDEIPL 655 (1493)
Q Consensus 640 ~~G~~-------i~l~~~~e~~~ 655 (1493)
..|.+ |.|++++....
T Consensus 589 ~~~~~~~~~A~fY~lVs~dT~E~ 611 (732)
T TIGR00603 589 KGSDAEEYNAFFYSLVSKDTQEM 611 (732)
T ss_pred CCCccccccceEEEEecCCchHH
Confidence 77765 88888776544
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0353|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=259.71 Aligned_cols=338 Identities=19% Similarity=0.258 Sum_probs=244.7
Q ss_pred cCCCCHHHHHHHHH-CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhH
Q psy16310 772 KFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEE 850 (1493)
Q Consensus 772 ~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~ 850 (1493)
+|+.+....+.|++ +..++++|.|..+|. +...|.|+++..|||.||++||.+|++..
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain-~~ma~ed~~lil~tgggkslcyqlpal~a-------------------- 133 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAIN-ATMAGEDAFLILPTGGGKSLCYQLPALCA-------------------- 133 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhh-hhhccCceEEEEeCCCccchhhhhhHHhc--------------------
Confidence 56677777777765 467889999999997 66688999999999999999999998842
Q ss_pred HHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH---Hh-c--
Q psy16310 851 EAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---IL-N-- 924 (1493)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~---~l-~-- 924 (1493)
...+||++|...|++.+.-.++.++ +....+....+.+...+ .+ .
T Consensus 134 -------------------------dg~alvi~plislmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkd 184 (695)
T KOG0353|consen 134 -------------------------DGFALVICPLISLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKD 184 (695)
T ss_pred -------------------------CCceEeechhHHHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCC
Confidence 2359999999999999888888875 66666666555443222 11 1
Q ss_pred CCCcEEEECcHHHHH---HHHhCcCccccccceeEEEecccchhccCCC--hhHHH--HHHHHhcccCCCCCceEEEEec
Q psy16310 925 KCPHILVATPGRLWE---FIQLGHFHLTELYKINYLVIDETDRMIESGH--FPELK--NILDRVTMTETSQPRQTFVFSA 997 (1493)
Q Consensus 925 ~~~~IlV~TP~rl~~---~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~--~~~l~--~il~~l~~~~~~~~~q~ll~SA 997 (1493)
....++..||+.+.. +|.+-... .....+.++-+||+|+-.+||+ .+++. .++.+- -++..+++++|
T Consensus 185 se~kliyvtpekiaksk~~mnkleka-~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrq-----f~~~~iiglta 258 (695)
T KOG0353|consen 185 SEFKLIYVTPEKIAKSKKFMNKLEKA-LEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQ-----FKGAPIIGLTA 258 (695)
T ss_pred ceeEEEEecHHHHHHHHHHHHHHHHH-hhcceeEEEeecceeehhhhCcccCcchHHHHHHHHh-----CCCCceeeeeh
Confidence 245799999999853 22111100 1233578999999999999985 44433 233332 26778999999
Q ss_pred ccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhH---HHHHHH
Q psy16310 998 TLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY---LYYFIL 1074 (1493)
Q Consensus 998 Tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---l~~~l~ 1074 (1493)
|.++.+......... +...+ .+......+ ++ .+.+.......... +..++.
T Consensus 259 tatn~vl~d~k~il~----------------ie~~~--------tf~a~fnr~-nl-~yev~qkp~n~dd~~edi~k~i~ 312 (695)
T KOG0353|consen 259 TATNHVLDDAKDILC----------------IEAAF--------TFRAGFNRP-NL-KYEVRQKPGNEDDCIEDIAKLIK 312 (695)
T ss_pred hhhcchhhHHHHHHh----------------HHhhh--------eeecccCCC-Cc-eeEeeeCCCChHHHHHHHHHHhc
Confidence 999876554421111 11111 111111111 11 11122222222222 222333
Q ss_pred hC--CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEe
Q psy16310 1075 QH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 1152 (1493)
Q Consensus 1075 ~~--~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~ 1152 (1493)
.. +...||||-++..++.++..|+.+|+.+..||+.|.+.+|.-+.+.|..|+++|+|||-++++|||-|+|+.|||.
T Consensus 313 ~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihh 392 (695)
T KOG0353|consen 313 GDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHH 392 (695)
T ss_pred cccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEec
Confidence 22 4568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHH-------------------------------------------HHhccCCCCCCCeEEEEecCCCHHHH
Q psy16310 1153 HVPRTSEIYIH-------------------------------------------RSGRTARANNEGLTLVLIESDEIPLY 1189 (1493)
Q Consensus 1153 d~p~s~~~yiq-------------------------------------------r~GR~gR~g~~G~~i~l~~~~e~~~~ 1189 (1493)
.+|.+++.|.| ..||+||.|.+..||+++.-.+....
T Consensus 393 sl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ 472 (695)
T KOG0353|consen 393 SLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKI 472 (695)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhH
Confidence 99999999999 78999999999999999876665544
Q ss_pred HH
Q psy16310 1190 IK 1191 (1493)
Q Consensus 1190 ~~ 1191 (1493)
..
T Consensus 473 ss 474 (695)
T KOG0353|consen 473 SS 474 (695)
T ss_pred HH
Confidence 43
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=288.61 Aligned_cols=366 Identities=17% Similarity=0.198 Sum_probs=209.9
Q ss_pred CChHHHHhhhhhhhcc--CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcch
Q psy16310 173 TPTKIQSMVMPSALLA--RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~--~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1493)
.+|++|.+++..++.+ +++++++|+||||||.+|+.++...+.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~----------------------------------- 188 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA----------------------------------- 188 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH-----------------------------------
Confidence 5899999999855542 578999999999999999888766552
Q ss_pred hhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHH---H-hcCCCCEEEeCcHHHHHHHHc
Q psy16310 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---I-LNKCPHILVATPGRLWEFIQL 326 (1493)
Q Consensus 251 ~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~---~-l~~~~~IiV~TP~~L~~~l~~ 326 (1493)
.+.++|||+||++|+.|+++.+.... +.++..++|+.+...... . ..+.++|+|+||+.+.
T Consensus 189 -------~g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~----- 253 (679)
T PRK05580 189 -------QGKQALVLVPEIALTPQMLARFRARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF----- 253 (679)
T ss_pred -------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-----
Confidence 23579999999999999999998753 578999999987654432 2 3455799999998873
Q ss_pred CCccccccccccEEEEecCchhhhcCC---hhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceE
Q psy16310 327 GHFHLTELYKINYLVIDETDRMIESGH---FPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQT 403 (1493)
Q Consensus 327 ~~~~~~~l~~i~~lViDEAh~ll~~~~---~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 403 (1493)
..+.++++|||||+|...-.+. .-+...+.... ......++
T Consensus 254 -----~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~r-------------------------------a~~~~~~~ 297 (679)
T PRK05580 254 -----LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVR-------------------------------AKLENIPV 297 (679)
T ss_pred -----ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHH-------------------------------hhccCCCE
Confidence 1355889999999997542211 11122221111 01345799
Q ss_pred EEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHH
Q psy16310 404 FVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 483 (1493)
Q Consensus 404 il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1493)
+++|||++......+ ..+... ...+....... ......+ .. ... .
T Consensus 298 il~SATps~~s~~~~--~~g~~~------------------------~~~l~~r~~~~-~~p~v~~-id--~~~-----~ 342 (679)
T PRK05580 298 VLGSATPSLESLANA--QQGRYR------------------------LLRLTKRAGGA-RLPEVEI-ID--MRE-----L 342 (679)
T ss_pred EEEcCCCCHHHHHHH--hcccee------------------------EEEeccccccC-CCCeEEE-Ee--chh-----h
Confidence 999999874432221 100000 00000000000 0000000 00 000 0
Q ss_pred HhcCCCcchhhHHHhhhhcc---CCcccccccccccccccccc----ccccccCc--------hhhHHHHHHhhC---C-
Q psy16310 484 ILQHPGRTLCEEIQDLLNIK---SPKIVDLTEKIGITKTLTES----KILCKHDE--------KDSYLYYFILQH---P- 544 (1493)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--------k~~~l~~~l~~~---~- 544 (1493)
........+...+...+... ...+.-+....+....+.+. ...|..-. ...+.++..... +
T Consensus 343 ~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~ 422 (679)
T PRK05580 343 LRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPK 422 (679)
T ss_pred hhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCC
Confidence 00000000111111111100 00011111111111000000 00000000 000000000000 0
Q ss_pred ----CcEEEEecchhhHHHHHHHHHhc--CCCccccccCCCH--HHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEE
Q psy16310 545 ----GRTLVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQ--RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 616 (1493)
Q Consensus 545 ----~~~IIF~~s~~~a~~L~~~L~~~--~~~~~~lhg~~~~--~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~V 616 (1493)
-....|......++++.+.|... +.++..+|+++++ .++..+++.|++|+.+|||+|+++++|+|+|+|++|
T Consensus 423 ~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV 502 (679)
T PRK05580 423 ACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLV 502 (679)
T ss_pred CCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEE
Confidence 00122333345677888888776 7788999999874 578999999999999999999999999999999999
Q ss_pred EEe--cCCCC----------hHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 617 IHY--HVPRT----------SEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 617 I~y--d~P~s----------~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
+.+ |.+.+ ...|+|++||+||++..|.+++.....+-.....+
T Consensus 503 ~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 503 GVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred EEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHH
Confidence 654 54433 36789999999999999999988766665555444
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=280.39 Aligned_cols=294 Identities=18% Similarity=0.212 Sum_probs=194.4
Q ss_pred EEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHH
Q psy16310 810 VGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889 (1493)
Q Consensus 810 lv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa 889 (1493)
++.||||||||++|+..+...+ ..+.++|||+|+++|+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l------------------------------------------~~g~~vLvlvP~i~L~ 38 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL------------------------------------------ALGKSVLVLVPEIALT 38 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH------------------------------------------HcCCeEEEEeCcHHHH
Confidence 4689999999999976655443 1234799999999999
Q ss_pred HHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH---H-hcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchh
Q psy16310 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---I-LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRM 965 (1493)
Q Consensus 890 ~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~---~-l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~l 965 (1493)
.|+++.|++.+ +..+..++|+.+..+... . ....++|||||+..+. ..+.++++|||||+|..
T Consensus 39 ~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf----------~p~~~l~lIIVDEeh~~ 105 (505)
T TIGR00595 39 PQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF----------LPFKNLGLIIVDEEHDS 105 (505)
T ss_pred HHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc----------CcccCCCEEEEECCCcc
Confidence 99999998753 467888999887654322 2 2345799999998763 23668899999999987
Q ss_pred ccCCC------hhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCC-C
Q psy16310 966 IESGH------FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-P 1038 (1493)
Q Consensus 966 l~~~~------~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 1038 (1493)
..++. ..++..+.... .+.+++++|||++.+....+ ..+.... ..+.....-.. +
T Consensus 106 sykq~~~p~y~ar~~a~~ra~~------~~~~vil~SATPsles~~~~--~~g~~~~----------~~l~~r~~~~~~p 167 (505)
T TIGR00595 106 SYKQEEGPRYHARDVAVYRAKK------FNCPVVLGSATPSLESYHNA--KQKAYRL----------LVLTRRVSGRKPP 167 (505)
T ss_pred ccccccCCCCcHHHHHHHHHHh------cCCCEEEEeCCCCHHHHHHH--hcCCeEE----------eechhhhcCCCCC
Confidence 64331 12233333332 56889999999764332221 1110000 00000000000 1
Q ss_pred --cEEeccccccccccceeeEEEecccchhhHHHHHH---HhCCCcEEEEecchhh------------------------
Q psy16310 1039 --KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI---LQHPGRTLVFCNSISS------------------------ 1089 (1493)
Q Consensus 1039 --~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l---~~~~~~~IVF~~s~~~------------------------ 1089 (1493)
.+++..... . ...-...++..+ ...++++|||+|++..
T Consensus 168 ~v~vid~~~~~------~-------~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~ 234 (505)
T TIGR00595 168 EVKLIDMRKEP------R-------QSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTY 234 (505)
T ss_pred eEEEEeccccc------c-------cCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEE
Confidence 111111000 0 000111233333 3346789999887643
Q ss_pred ------------------------------------HHHHHHHHHhc--CCCccccccCCCHHHH--HHHHHHHhcCCCC
Q psy16310 1090 ------------------------------------VKRLTQLLTML--KCSPLPLHASMNQRQR--LKNLDRFRDQNNS 1129 (1493)
Q Consensus 1090 ------------------------------------~~~l~~~L~~~--~~~~~~lhg~m~~~~R--~~~~~~F~~g~~~ 1129 (1493)
++++++.|... +.++..+|+++++..+ ..+++.|++|+.+
T Consensus 235 h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ 314 (505)
T TIGR00595 235 HKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD 314 (505)
T ss_pred ecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC
Confidence 47778888776 6788899999988766 8999999999999
Q ss_pred eEEeehhhhccccCCCccEEE--EecC----CC------ChhHHHHHHhccCCCCCCCeEEEEecCCCHHHH
Q psy16310 1130 ILLATDVAARGLDIPGIEHVI--HYHV----PR------TSEIYIHRSGRTARANNEGLTLVLIESDEIPLY 1189 (1493)
Q Consensus 1130 VLVaTdv~~~GiDip~v~~VI--~~d~----p~------s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~ 1189 (1493)
|||+|+++++|+|+|+|++|+ ++|. |. ....|+|++||+||+++.|.+++.....+...+
T Consensus 315 ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~~~~ 386 (505)
T TIGR00595 315 ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNHPAI 386 (505)
T ss_pred EEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCCHHH
Confidence 999999999999999999986 5553 32 246789999999999999999876544443333
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=298.48 Aligned_cols=311 Identities=20% Similarity=0.243 Sum_probs=205.4
Q ss_pred CCCCCCcHHHH--hhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhh
Q psy16310 786 KGFKTPTKIQS--MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863 (1493)
Q Consensus 786 ~g~~~pt~iQ~--~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1493)
..|...-|+.. ..|..++..+..+|++|+||||||. .+|.+..-..
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~------------------------------ 107 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELG------------------------------ 107 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcC------------------------------
Confidence 45555556655 4455677777888999999999998 4675532110
Q ss_pred hcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCC-CHHHHHHHhcCCCcEEEECcHHHHHHHH
Q psy16310 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGM-STEKQLRILNKCPHILVATPGRLWEFIQ 942 (1493)
Q Consensus 864 ~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~-~~~~~~~~l~~~~~IlV~TP~rl~~~l~ 942 (1493)
......+++.-|.|--|..++..+.... +..++..+|.. ....+ ......|.|+|||+|+..+.
T Consensus 108 ---------~~~~~~I~~tQPRRlAA~svA~RvA~el---g~~lG~~VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l~ 172 (1283)
T TIGR01967 108 ---------RGSHGLIGHTQPRRLAARTVAQRIAEEL---GTPLGEKVGYKVRFHDQ---VSSNTLVKLMTDGILLAETQ 172 (1283)
T ss_pred ---------CCCCceEecCCccHHHHHHHHHHHHHHh---CCCcceEEeeEEcCCcc---cCCCceeeeccccHHHHHhh
Confidence 0112246666788877777766554422 33344444421 11111 13456899999999999887
Q ss_pred hCcCccccccceeEEEecccc-hhccCCChhH-HHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCccccc
Q psy16310 943 LGHFHLTELYKINYLVIDETD-RMIESGHFPE-LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVS 1020 (1493)
Q Consensus 943 ~~~~~~~~l~~l~~lVlDEah-~ll~~~~~~~-l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~ 1020 (1493)
... .+.++++||||||| ++++.+|.-. +..++.. .+..++++||||+... .+...+..
T Consensus 173 ~d~----~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~------rpdLKlIlmSATld~~--~fa~~F~~-------- 232 (1283)
T TIGR01967 173 QDR----FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR------RPDLKIIITSATIDPE--RFSRHFNN-------- 232 (1283)
T ss_pred hCc----ccccCcEEEEcCcchhhccchhHHHHHHHHHhh------CCCCeEEEEeCCcCHH--HHHHHhcC--------
Confidence 543 36789999999999 6888777543 4444332 2468999999999732 22211110
Q ss_pred CCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecc------cchhhHHHHH----HHhCCCcEEEEecchhhH
Q psy16310 1021 KGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH------DEKDSYLYYF----ILQHPGRTLVFCNSISSV 1090 (1493)
Q Consensus 1021 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~~----l~~~~~~~IVF~~s~~~~ 1090 (1493)
..++.+..... .+...+..... .+....+... +...++.+|||+++...+
T Consensus 233 -----------------apvI~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI 292 (1283)
T TIGR01967 233 -----------------APIIEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREI 292 (1283)
T ss_pred -----------------CCEEEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHH
Confidence 11111111100 11111111110 1122222222 233578999999999999
Q ss_pred HHHHHHHHhcCC---CccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCC------------
Q psy16310 1091 KRLTQLLTMLKC---SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP------------ 1155 (1493)
Q Consensus 1091 ~~l~~~L~~~~~---~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p------------ 1155 (1493)
+.++..|...+. .+.++||+|++.+|.++++.+ +..+|||||+++++|||||+|++||+++++
T Consensus 293 ~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~ 370 (1283)
T TIGR01967 293 RDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQ 370 (1283)
T ss_pred HHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCcc
Confidence 999999987644 478899999999999986654 346899999999999999999999998854
Q ss_pred ------CChhHHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1156 ------RTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1156 ------~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
.|..+|.||+|||||.| .|.||.|++..+.
T Consensus 371 ~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 371 RLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred ccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 35689999999999998 9999999976543
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=285.42 Aligned_cols=153 Identities=18% Similarity=0.307 Sum_probs=124.5
Q ss_pred cchhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHH-HhcCCCccccccCCCHHHHHHHHHHHhcC--CCCeEEeehhhh
Q psy16310 1063 DEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLL-TMLKCSPLPLHASMNQRQRLKNLDRFRDQ--NNSILLATDVAA 1138 (1493)
Q Consensus 1063 ~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L-~~~~~~~~~lhg~m~~~~R~~~~~~F~~g--~~~VLVaTdv~~ 1138 (1493)
+.|...+..++... +.++||||+++..+..++..| ...|+.+..+||+|++.+|.++++.|+++ ..+|||||++++
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs 557 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc
Confidence 34666777777655 679999999999999999999 46799999999999999999999999984 599999999999
Q ss_pred ccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCC--CCCChHHHHHH
Q psy16310 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPD--FPIDESVLSLI 1215 (1493)
Q Consensus 1139 ~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~i 1215 (1493)
+|+|++.+++|||||+|.++..|+||+||+||.|+.|.+.+++...+...-..+..-+.....+-. .|....+....
T Consensus 558 eGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~ 636 (956)
T PRK04914 558 EGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYDEF 636 (956)
T ss_pred cCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHHHH
Confidence 999999999999999999999999999999999999987777765554445555555555444333 33333444433
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=288.73 Aligned_cols=333 Identities=20% Similarity=0.224 Sum_probs=202.8
Q ss_pred CCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcch
Q psy16310 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 867 (1493)
Q Consensus 788 ~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1493)
...|+|+|..+.. +...+.-+++.||||+|||.+++..+.. +...
T Consensus 284 ~~~p~p~Q~~~~~-~~~~pgl~ileApTGsGKTEAAL~~A~~-l~~~--------------------------------- 328 (878)
T PRK09694 284 GYQPRQLQTLVDA-LPLQPGLTIIEAPTGSGKTEAALAYAWR-LIDQ--------------------------------- 328 (878)
T ss_pred CCCChHHHHHHHh-hccCCCeEEEEeCCCCCHHHHHHHHHHH-HHHh---------------------------------
Confidence 4589999998864 3334567899999999999998776553 3221
Q ss_pred hhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCC--CCcEEEEEEcCCCHHHHH---------------------HHhc
Q psy16310 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY--TPVKVACVVGGMSTEKQL---------------------RILN 924 (1493)
Q Consensus 868 ~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~--~~~~v~~~~gg~~~~~~~---------------------~~l~ 924 (1493)
....+++|..||+++++|+++.+..+... ....+.+++|........ ..+.
T Consensus 329 ------~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 402 (878)
T PRK09694 329 ------GLADSIIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLS 402 (878)
T ss_pred ------CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHh
Confidence 12346999999999999999998864332 134677777754321110 1111
Q ss_pred ---C---CCcEEEECcHHHHHHHHhC-cCcccccc-ceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEe
Q psy16310 925 ---K---CPHILVATPGRLWEFIQLG-HFHLTELY-KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996 (1493)
Q Consensus 925 ---~---~~~IlV~TP~rl~~~l~~~-~~~~~~l~-~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~S 996 (1493)
+ -.+|+|||+..++..+-.. +..+..+. .-++|||||+|.+ +......+..++..+. .....++++|
T Consensus 403 ~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~----~~g~~vIllS 477 (878)
T PRK09694 403 QSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQA----QAGGSVILLS 477 (878)
T ss_pred hhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHH----hcCCcEEEEe
Confidence 1 1489999998887543221 11111110 1248999999975 3323344555555543 2346799999
Q ss_pred cccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccc---cccccceeeEEEecc-cchhhHHHHH
Q psy16310 997 ATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI---GITKTLTESKILCKH-DEKDSYLYYF 1072 (1493)
Q Consensus 997 ATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~k~~~l~~~ 1072 (1493)
||+|......+....+...........+.+ ..........+.+.... .....+.-....... ......+..+
T Consensus 478 ATLP~~~r~~L~~a~~~~~~~~~~~~YPlv----t~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i 553 (878)
T PRK09694 478 ATLPATLKQKLLDTYGGHDPVELSSAYPLI----TWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRM 553 (878)
T ss_pred CCCCHHHHHHHHHHhccccccccccccccc----cccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHH
Confidence 999987766543221110000000000000 00000000001111000 000001000000011 1111222222
Q ss_pred HH--hCCCcEEEEecchhhHHHHHHHHHhcC---CCccccccCCCHHHH----HHHHHHH-hcCC---CCeEEeehhhhc
Q psy16310 1073 IL--QHPGRTLVFCNSISSVKRLTQLLTMLK---CSPLPLHASMNQRQR----LKNLDRF-RDQN---NSILLATDVAAR 1139 (1493)
Q Consensus 1073 l~--~~~~~~IVF~~s~~~~~~l~~~L~~~~---~~~~~lhg~m~~~~R----~~~~~~F-~~g~---~~VLVaTdv~~~ 1139 (1493)
+. ..+++++|||||++.|+.++..|+..+ ..+..+||++++.+| .++++.| ++|+ ..|||||+++++
T Consensus 554 ~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~ 633 (878)
T PRK09694 554 IAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQ 633 (878)
T ss_pred HHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhh
Confidence 22 346789999999999999999999764 578999999999999 4577888 6666 479999999999
Q ss_pred cccCCCccEEEEecCCCChhHHHHHHhccCCCCC
Q psy16310 1140 GLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173 (1493)
Q Consensus 1140 GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~ 1173 (1493)
|||| +++++|....| .+.|+||+||+||.++
T Consensus 634 GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 634 SLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred eeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999 68999998888 6799999999999976
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=296.84 Aligned_cols=322 Identities=20% Similarity=0.274 Sum_probs=200.4
Q ss_pred CCCCCChHHHH--hhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhh
Q psy16310 169 KGFKTPTKIQS--MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 246 (1493)
Q Consensus 169 ~g~~~pt~iQ~--~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1493)
..|...-|+.. ..|..++.+++.+|++|+||||||.. +|.+- +...
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~l--le~~---------------------------- 107 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKIC--LELG---------------------------- 107 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHH--HHcC----------------------------
Confidence 34544455554 34445777788899999999999995 56442 1100
Q ss_pred hcchhhhhcccCceEEEEEcccHHHHHHHHHHH-HHhcCCCCeEEEEEEcCC-CHHHHHHHhcCCCCEEEeCcHHHHHHH
Q psy16310 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHI-LDAGKYTPVKVACVVGGM-STEKQLRILNKCPHILVATPGRLWEFI 324 (1493)
Q Consensus 247 ~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~-~~l~~~~~i~v~~~~G~~-~~~~~~~~l~~~~~IiV~TP~~L~~~l 324 (1493)
. ....++++.-|.|--|..+...+ .+++ ..++..+|.. ....+ ......|+|+|||+|++.+
T Consensus 108 --------~-~~~~~I~~tQPRRlAA~svA~RvA~elg----~~lG~~VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l 171 (1283)
T TIGR01967 108 --------R-GSHGLIGHTQPRRLAARTVAQRIAEELG----TPLGEKVGYKVRFHDQ---VSSNTLVKLMTDGILLAET 171 (1283)
T ss_pred --------C-CCCceEecCCccHHHHHHHHHHHHHHhC----CCcceEEeeEEcCCcc---cCCCceeeeccccHHHHHh
Confidence 0 11235666778877777665544 3343 3333444421 11111 1345689999999999998
Q ss_pred HcCCccccccccccEEEEecCc-hhhhcCChhh-HHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCce
Q psy16310 325 QLGHFHLTELYKINYLVIDETD-RMIESGHFPE-LKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQ 402 (1493)
Q Consensus 325 ~~~~~~~~~l~~i~~lViDEAh-~ll~~~~~~~-l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 402 (1493)
..+. .|.++++||||||| ++++..+.-. +..++.. .+..|
T Consensus 172 ~~d~----~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~----------------------------------rpdLK 213 (1283)
T TIGR01967 172 QQDR----FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR----------------------------------RPDLK 213 (1283)
T ss_pred hhCc----ccccCcEEEEcCcchhhccchhHHHHHHHHHhh----------------------------------CCCCe
Confidence 7653 36789999999999 4777665432 3333221 23468
Q ss_pred EEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHH
Q psy16310 403 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 482 (1493)
Q Consensus 403 ~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1493)
+|+||||+... .+... +. ...++.+.+... + ... +|
T Consensus 214 lIlmSATld~~--~fa~~-----------------------F~--~apvI~V~Gr~~-P--Vev--------------~Y 249 (1283)
T TIGR01967 214 IIITSATIDPE--RFSRH-----------------------FN--NAPIIEVSGRTY-P--VEV--------------RY 249 (1283)
T ss_pred EEEEeCCcCHH--HHHHH-----------------------hc--CCCEEEECCCcc-c--cee--------------EE
Confidence 99999999642 22111 00 000000000000 0 000 00
Q ss_pred HHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHH
Q psy16310 483 FILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQ 562 (1493)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~ 562 (1493)
......... . ... ....-...+..++...++.+|||+++..+++.+++
T Consensus 250 ~~~~~~~~~--~---------------------------~~~---~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~ 297 (1283)
T TIGR01967 250 RPLVEEQED--D---------------------------DLD---QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAE 297 (1283)
T ss_pred ecccccccc--h---------------------------hhh---HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHH
Confidence 000000000 0 000 00000112223333456899999999999999999
Q ss_pred HHHhcC---CCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCC-----------------
Q psy16310 563 LLTMLK---CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP----------------- 622 (1493)
Q Consensus 563 ~L~~~~---~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P----------------- 622 (1493)
.|...+ +.+..+||+|++.+|.++++.+ +..+||||||++++|||||+|++||+++++
T Consensus 298 ~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~ 375 (1283)
T TIGR01967 298 ILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIE 375 (1283)
T ss_pred HHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCc
Confidence 998764 4578899999999999986654 347999999999999999999999999854
Q ss_pred -CChHHHHHHHhccccCCCCCeEEEEecCCcchh
Q psy16310 623 -RTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 623 -~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
.|..+|+||+|||||.| +|.||.||+..+...
T Consensus 376 ~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 376 PISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred cCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 35679999999999998 999999998876543
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-25 Score=273.75 Aligned_cols=347 Identities=16% Similarity=0.207 Sum_probs=229.3
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.|.++|...-- +|..|+ |+.++||+|||++|.+|++...+.
T Consensus 82 ~~ydvQliGg~-~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~------------------------------------ 122 (896)
T PRK13104 82 RHFDVQLIGGM-VLHEGN--IAEMRTGEGKTLVATLPAYLNAIS------------------------------------ 122 (896)
T ss_pred CcchHHHhhhh-hhccCc--cccccCCCCchHHHHHHHHHHHhc------------------------------------
Confidence 67888888763 565553 889999999999999999976543
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHhCc-Cc
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLGH-FH 947 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~~~-~~ 947 (1493)
+..++||+||++||.|.++.+..+..++++++++++||.+...+.... .+||+||||++| .|+|+.+. ..
T Consensus 123 ------G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~ 194 (896)
T PRK13104 123 ------GRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFS 194 (896)
T ss_pred ------CCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccc
Confidence 124899999999999999999999999999999999999887765544 579999999999 99998662 11
Q ss_pred cc--cccceeEEEecccchhccCC----------------ChhHHHHHHHHhcccC---------CCCCceEEEEecc--
Q psy16310 948 LT--ELYKINYLVIDETDRMIESG----------------HFPELKNILDRVTMTE---------TSQPRQTFVFSAT-- 998 (1493)
Q Consensus 948 ~~--~l~~l~~lVlDEah~ll~~~----------------~~~~l~~il~~l~~~~---------~~~~~q~ll~SAT-- 998 (1493)
+. ....+.++||||||.|+=+. .+..+..++..|.... .......+.++-.
T Consensus 195 ~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~ 274 (896)
T PRK13104 195 LTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGH 274 (896)
T ss_pred hHhhhccccceEEeccHhhhhhhccCCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHH
Confidence 11 12478999999999974221 1333344444443210 0011122222221
Q ss_pred ------------cc--------------cchHhHHhhh--ccCcCc---------------ccccCCC------------
Q psy16310 999 ------------LT--------------HSLKNSLNLK--KGQSKS---------------KKVSKGD------------ 1023 (1493)
Q Consensus 999 ------------l~--------------~~~~~~~~~~--~~~~~~---------------~~~~~~~------------ 1023 (1493)
++ +.+...+... +..... ..+..+.
T Consensus 275 ~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEa 354 (896)
T PRK13104 275 LHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEA 354 (896)
T ss_pred HHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHH
Confidence 00 0011111000 000000 0000000
Q ss_pred ---------------chhHHH---H---------------hHhccCCCcEEeccccccccccceeeEEEecccchhhHHH
Q psy16310 1024 ---------------PSIKRL---Q---------------DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 1070 (1493)
Q Consensus 1024 ---------------~~~~~l---~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 1070 (1493)
-.+..+ + .+..+.+-.++.+.........-....+......|...++
T Consensus 355 KE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~ 434 (896)
T PRK13104 355 KEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAII 434 (896)
T ss_pred HcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHH
Confidence 000000 0 0011111111222111111111112233444556666666
Q ss_pred HHH---HhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCC--
Q psy16310 1071 YFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG-- 1145 (1493)
Q Consensus 1071 ~~l---~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~-- 1145 (1493)
..+ ...+.|+||||+|+..++.++..|...|++...+||.+.+.+|..+.+.|+.|. |+|||++++||+||.=
T Consensus 435 ~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lgg 512 (896)
T PRK13104 435 EDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGG 512 (896)
T ss_pred HHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCC
Confidence 555 345789999999999999999999999999999999999999999999999994 9999999999999951
Q ss_pred ------------------------------------ccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCC
Q psy16310 1146 ------------------------------------IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185 (1493)
Q Consensus 1146 ------------------------------------v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e 1185 (1493)
=-|||--..+.|..-=-|-.||+||-|.+|.+-.|++-.|
T Consensus 513 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 513 SLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred chhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 1267777778888888899999999999999999987654
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-26 Score=280.80 Aligned_cols=416 Identities=16% Similarity=0.174 Sum_probs=249.7
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
|. .|+++|.-.-- +|..| -|+.++||+|||++|++|++...+.
T Consensus 80 g~-~~ydvQliGg~-~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~--------------------------------- 122 (896)
T PRK13104 80 GL-RHFDVQLIGGM-VLHEG--NIAEMRTGEGKTLVATLPAYLNAIS--------------------------------- 122 (896)
T ss_pred CC-CcchHHHhhhh-hhccC--ccccccCCCCchHHHHHHHHHHHhc---------------------------------
Confidence 44 68889987663 56554 4889999999999999999865532
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHcCC
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLGH 328 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~~~ 328 (1493)
+..|+||+||++||.|.++++..+..++|+++++++|+.+...+.... .+||+|+||++| .++|..+.
T Consensus 123 ---------G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~ 191 (896)
T PRK13104 123 ---------GRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNM 191 (896)
T ss_pred ---------CCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCC
Confidence 234999999999999999999999999999999999998887765554 479999999999 99987652
Q ss_pred -cccc--ccccccEEEEecCchhhhcC-C---------------hhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 329 -FHLT--ELYKINYLVIDETDRMIESG-H---------------FPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 329 -~~~~--~l~~i~~lViDEAh~ll~~~-~---------------~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
..+. ....+.++||||||.||=+. . +..+..+...+....... ...+
T Consensus 192 ~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~------~~~d-------- 257 (896)
T PRK13104 192 AFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEG------DEGD-------- 257 (896)
T ss_pred ccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCccchHHHHHHHHHHHHHHhccccC------CCCC--------
Confidence 1111 12478999999999987321 1 112222222221110000 0000
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhcccc-ccccccCCC-chhhhHHhhh-----hccC-Cccc------c--
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS-KSKKVSKGD-PSIKRLQDLL-----NIKS-PKIV------D-- 453 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~-----~~~~-~~~~------~-- 453 (1493)
+.. ....+.+.++..=-..+..++....... ......... .....+...+ .... .+++ -
T Consensus 258 --y~i---dek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVD 332 (896)
T PRK13104 258 --YTI---DEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVD 332 (896)
T ss_pred --EEE---EcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEE
Confidence 000 0011122222211111111110000000 000000000 0001111110 0000 0000 0
Q ss_pred -hhhhhcccccc----chhh------hhhcc---CCcchhhHHHH----hcCCCcchhhHHHhhhhccCCcccccccccc
Q psy16310 454 -LTEKIGITKTL----TESK------ILCKH---DEKDSYLYYFI----LQHPGRTLCEEIQDLLNIKSPKIVDLTEKIG 515 (1493)
Q Consensus 454 -~~~~~~~~~~~----~~~~------~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1493)
.++.......+ .+.. .+... ...-.+..+|- ...-..+.......+...+.-.+..+.....
T Consensus 333 e~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp 412 (896)
T PRK13104 333 EHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRS 412 (896)
T ss_pred CCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCC
Confidence 00000000000 0000 00000 00011111111 1122233344445566666655555554444
Q ss_pred ccccccccccccccCchhhHHHHHHh---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhc
Q psy16310 516 ITKTLTESKILCKHDEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 592 (1493)
Q Consensus 516 ~~~~~~~~~~~~~~~~k~~~l~~~l~---~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~ 592 (1493)
.........++.....|...+...+. ..+.|+||||+|...++.|+.+|...|++...+|+.+.+.++..+.+.|+.
T Consensus 413 ~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~ 492 (896)
T PRK13104 413 MIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRP 492 (896)
T ss_pred cceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCC
Confidence 44444444555666677777766653 346799999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEechhhccCCCCC---------------------------------C-----cEEEEecCCCChHHHHHHHhc
Q psy16310 593 QNNSILLATDVAARGLDIPG---------------------------------I-----EHVIHYHVPRTSEIYIHRSGR 634 (1493)
Q Consensus 593 g~~~VLVaTdv~~rGlDip~---------------------------------v-----~~VI~yd~P~s~~~yiQR~GR 634 (1493)
|. |+|||++|+||+||.= | =+||-...+.|-.-=-|-.||
T Consensus 493 G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGR 570 (896)
T PRK13104 493 GA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGR 570 (896)
T ss_pred Cc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccc
Confidence 94 9999999999999951 1 178888888888888999999
Q ss_pred cccCCCCCeEEEEecCCcch
Q psy16310 635 TARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 635 agR~g~~G~~i~l~~~~e~~ 654 (1493)
+||-|.+|.+-.|++-+|--
T Consensus 571 aGRQGDPGss~f~lSleD~l 590 (896)
T PRK13104 571 AGRQGDPGSSRFYLSLEDNL 590 (896)
T ss_pred cccCCCCCceEEEEEcCcHH
Confidence 99999999999999876643
|
|
| >KOG0353|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-26 Score=243.63 Aligned_cols=344 Identities=19% Similarity=0.259 Sum_probs=241.3
Q ss_pred cccCCCHHHHHHHHHC-CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccch
Q psy16310 154 VKFNIPETIIRALYQK-GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLE 232 (1493)
Q Consensus 154 ~~l~l~~~l~~~l~~~-g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~ 232 (1493)
++++.+....+.|++. ...+++|.|.++|. +...+.|+++..|||.||+++|.||++-
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain-~~ma~ed~~lil~tgggkslcyqlpal~-------------------- 132 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAIN-ATMAGEDAFLILPTGGGKSLCYQLPALC-------------------- 132 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhh-hhhccCceEEEEeCCCccchhhhhhHHh--------------------
Confidence 3577777877777654 67889999999997 6678899999999999999999999872
Q ss_pred HHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHH---Hh-c-
Q psy16310 233 EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---IL-N- 307 (1493)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~---~l-~- 307 (1493)
....+|+++|...|+..+.-.++.+ |+....+....+...-.. .+ .
T Consensus 133 -------------------------adg~alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nk 183 (695)
T KOG0353|consen 133 -------------------------ADGFALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNK 183 (695)
T ss_pred -------------------------cCCceEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCC
Confidence 1245999999999999988888887 566666666555433221 11 1
Q ss_pred -CCCCEEEeCcHHHHHH--HHcCCccccccccccEEEEecCchhhhcC--ChhhHH--HHHHhhccccCCCccccccccC
Q psy16310 308 -KCPHILVATPGRLWEF--IQLGHFHLTELYKINYLVIDETDRMIESG--HFPELK--NILDRVTMTETSQPRQTMIESG 380 (1493)
Q Consensus 308 -~~~~IiV~TP~~L~~~--l~~~~~~~~~l~~i~~lViDEAh~ll~~~--~~~~l~--~il~~l~~~~~~~~~~~~~~~~ 380 (1493)
....+|..||+.+... +.+.--.......+.++-+||+|++..|| |.+.+. .|+++.
T Consensus 184 dse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrq---------------- 247 (695)
T KOG0353|consen 184 DSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQ---------------- 247 (695)
T ss_pred CceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHh----------------
Confidence 2346899999987531 11110001112246889999999999886 444432 233322
Q ss_pred CcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhcc
Q psy16310 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGI 460 (1493)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (1493)
-+...+++++||.++.+..-. ++.+.+... +.+
T Consensus 248 -----------------f~~~~iigltatatn~vl~d~----------------------k~il~ie~~--------~tf 280 (695)
T KOG0353|consen 248 -----------------FKGAPIIGLTATATNHVLDDA----------------------KDILCIEAA--------FTF 280 (695)
T ss_pred -----------------CCCCceeeeehhhhcchhhHH----------------------HHHHhHHhh--------hee
Confidence 234579999999997764322 111111000 000
Q ss_pred ccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHH
Q psy16310 461 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 540 (1493)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 540 (1493)
.. ......++|-+.+.|... +.-..-+..++
T Consensus 281 ~a-----------~fnr~nl~yev~qkp~n~--------------------------------------dd~~edi~k~i 311 (695)
T KOG0353|consen 281 RA-----------GFNRPNLKYEVRQKPGNE--------------------------------------DDCIEDIAKLI 311 (695)
T ss_pred ec-----------ccCCCCceeEeeeCCCCh--------------------------------------HHHHHHHHHHh
Confidence 00 000011111111111110 01111111222
Q ss_pred hh-C-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE
Q psy16310 541 LQ-H-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618 (1493)
Q Consensus 541 ~~-~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~ 618 (1493)
.. . +...||||-|+.+|+.++..|+..|+....+|+.|.+.++..+-+.|..|+++|+|||-.++.|||-|+|+.|||
T Consensus 312 ~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvih 391 (695)
T KOG0353|consen 312 KGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIH 391 (695)
T ss_pred ccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEe
Confidence 21 1 346799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChHHHHH-------------------------------------------HHhccccCCCCCeEEEEecCCcchh
Q psy16310 619 YHVPRTSEIYIH-------------------------------------------RSGRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 619 yd~P~s~~~yiQ-------------------------------------------R~GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
..+|.|.+.|.| ..||+||.|.+..|+++|.-.|+..
T Consensus 392 hsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk 471 (695)
T KOG0353|consen 392 HSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFK 471 (695)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHh
Confidence 999999999999 7899999999999999998877665
Q ss_pred hhhh
Q psy16310 656 KTKF 659 (1493)
Q Consensus 656 ~~~l 659 (1493)
...+
T Consensus 472 ~ssm 475 (695)
T KOG0353|consen 472 ISSM 475 (695)
T ss_pred HHHH
Confidence 5444
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=276.70 Aligned_cols=152 Identities=16% Similarity=0.270 Sum_probs=129.4
Q ss_pred cccCCCHHHHHHHH-----HCCCCCC---hHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCcc
Q psy16310 154 VKFNIPETIIRALY-----QKGFKTP---TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 225 (1493)
Q Consensus 154 ~~l~l~~~l~~~l~-----~~g~~~p---t~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~ 225 (1493)
+.|++.+.+.+.+. ..||..| +|+|.+++| .+..++++|+.|+||+|||++|++|++..++.
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~-~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--------- 134 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILG-AIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--------- 134 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhh-hhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------
Confidence 35788999988877 6899999 999999999 55567899999999999999999999977642
Q ss_pred CCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH
Q psy16310 226 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 305 (1493)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~ 305 (1493)
+..++||+||++||.|+.+++..++.++++++++++||.+...+...
T Consensus 135 ---------------------------------g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~ 181 (970)
T PRK12899 135 ---------------------------------GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI 181 (970)
T ss_pred ---------------------------------cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH
Confidence 11389999999999999999999999999999999999998888766
Q ss_pred hcCCCCEEEeCcHHH-HHHHHcCCccccc----cccccEEEEecCchhhh
Q psy16310 306 LNKCPHILVATPGRL-WEFIQLGHFHLTE----LYKINYLVIDETDRMIE 350 (1493)
Q Consensus 306 l~~~~~IiV~TP~~L-~~~l~~~~~~~~~----l~~i~~lViDEAh~ll~ 350 (1493)
+ .+||+||||++| .++|..+...... ...+.++||||||.||-
T Consensus 182 y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 182 Y--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred c--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh
Confidence 5 489999999999 9999876544331 23568999999999874
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=264.57 Aligned_cols=152 Identities=15% Similarity=0.268 Sum_probs=129.8
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---cHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcc
Q psy16310 771 VKFNIPETIIRALY-----QKGFKTP---TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 842 (1493)
Q Consensus 771 ~~l~l~~~l~~~l~-----~~g~~~p---t~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~ 842 (1493)
+.|++...+.+.+. ..||..| ||+|.++||. +..+++++++++||+|||++|++|++..++..
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~-i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g-------- 135 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGA-IAMHKGFITEMQTGEGKTLTAVMPLYLNALTG-------- 135 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhh-hhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc--------
Confidence 46788998888877 6899999 9999999994 55678999999999999999999999876431
Q ss_pred cCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH
Q psy16310 843 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 922 (1493)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~ 922 (1493)
..++||+||++||.|+++.+..+++++++++.+++||.+...+...
T Consensus 136 ----------------------------------~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~ 181 (970)
T PRK12899 136 ----------------------------------KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI 181 (970)
T ss_pred ----------------------------------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH
Confidence 1389999999999999999999999999999999999999888766
Q ss_pred hcCCCcEEEECcHHH-HHHHHhCcCcccc----ccceeEEEecccchhcc
Q psy16310 923 LNKCPHILVATPGRL-WEFIQLGHFHLTE----LYKINYLVIDETDRMIE 967 (1493)
Q Consensus 923 l~~~~~IlV~TP~rl-~~~l~~~~~~~~~----l~~l~~lVlDEah~ll~ 967 (1493)
+ .+||+|||||+| .++++.+...+.. ...+.++||||||.|+-
T Consensus 182 y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 182 Y--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred c--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh
Confidence 5 589999999999 9999877544331 23568999999999853
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=263.68 Aligned_cols=334 Identities=20% Similarity=0.241 Sum_probs=232.2
Q ss_pred CCCHHHHHH-HHHCCCCCChHHHHhhhhhhhcc-----CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 157 NIPETIIRA-LYQKGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 157 ~l~~~l~~~-l~~~g~~~pt~iQ~~~i~~~l~~-----~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.....+++. +..+.| ++|..|+.++..+..+ ..+-++++..|||||+++++.++..+
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai---------------- 308 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI---------------- 308 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH----------------
Confidence 444555544 466788 6999999999865532 34678999999999999999999777
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHH---Hhc
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---ILN 307 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~---~l~ 307 (1493)
..|.++..++||--||.|.++.+.++...++++|..++|......... .+.
T Consensus 309 --------------------------~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~ 362 (677)
T COG1200 309 --------------------------EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLA 362 (677)
T ss_pred --------------------------HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHh
Confidence 345789999999999999999999999999999999999977555433 333
Q ss_pred -CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 308 -KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 308 -~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
+..+|+|+|-.-+.+ .. .+.++.++|+||-|+.--. =+..+..-
T Consensus 363 ~G~~~ivVGTHALiQd-----~V---~F~~LgLVIiDEQHRFGV~-----QR~~L~~K---------------------- 407 (677)
T COG1200 363 SGEIDIVVGTHALIQD-----KV---EFHNLGLVIIDEQHRFGVH-----QRLALREK---------------------- 407 (677)
T ss_pred CCCCCEEEEcchhhhc-----ce---eecceeEEEEeccccccHH-----HHHHHHHh----------------------
Confidence 348999999877633 22 2558899999999987321 11111111
Q ss_pred hhhhhccccCCCC-CceEEEEeeccc-hhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhcccccc
Q psy16310 387 NILDRVTMTETSQ-PRQTFVFSATLT-HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTL 464 (1493)
Q Consensus 387 ~~~~~~~~~~~~~-~~q~il~SATl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (1493)
.. .+.+++||||+= +.+.-.+ .+|-.+..+
T Consensus 408 -----------G~~~Ph~LvMTATPIPRTLAlt~-------------fgDldvS~I------------------------ 439 (677)
T COG1200 408 -----------GEQNPHVLVMTATPIPRTLALTA-------------FGDLDVSII------------------------ 439 (677)
T ss_pred -----------CCCCCcEEEEeCCCchHHHHHHH-------------hccccchhh------------------------
Confidence 11 357899999963 2221100 000000000
Q ss_pred chhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhh--
Q psy16310 465 TESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ-- 542 (1493)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-- 542 (1493)
.. .+..-......+-...+...++.++..
T Consensus 440 --------------------dE-----------------------------lP~GRkpI~T~~i~~~~~~~v~e~i~~ei 470 (677)
T COG1200 440 --------------------DE-----------------------------LPPGRKPITTVVIPHERRPEVYERIREEI 470 (677)
T ss_pred --------------------cc-----------------------------CCCCCCceEEEEeccccHHHHHHHHHHHH
Confidence 00 000000000011112222333333322
Q ss_pred -CCCcEEEEecchh--------hHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCC
Q psy16310 543 -HPGRTLVFCNSIS--------SVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 611 (1493)
Q Consensus 543 -~~~~~IIF~~s~~--------~a~~L~~~L~~~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip 611 (1493)
.+.++.|.|+-.+ .|..+++.|+.. +..++.+||.|+..++..++++|++|+++|||||.|.+.|+|+|
T Consensus 471 ~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVP 550 (677)
T COG1200 471 AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVP 550 (677)
T ss_pred HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCC
Confidence 3678888888765 445666777644 45689999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCC-ChHHHHHHHhccccCCCCCeEEEEecCCc-chhhhhhhhhhcc
Q psy16310 612 GIEHVIHYHVPR-TSEIYIHRSGRTARANNEGLTVVLIESDE-IPLKTKFNLQEEE 665 (1493)
Q Consensus 612 ~v~~VI~yd~P~-s~~~yiQR~GRagR~g~~G~~i~l~~~~e-~~~~~~l~~~~~~ 665 (1493)
+.++.|.++.-+ ......|-.||+||.+..++|++++.+.. ..-..++..+.+.
T Consensus 551 nATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t 606 (677)
T COG1200 551 NATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRET 606 (677)
T ss_pred CCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhc
Confidence 999999998764 57778889999999999999999998877 4434444443333
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-24 Score=263.21 Aligned_cols=350 Identities=18% Similarity=0.216 Sum_probs=235.6
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
+|. .|+++|.-.-- +|..|+ |+.++||+|||++|.+|++-..+.
T Consensus 78 lg~-~~~dvQlig~l-~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~-------------------------------- 121 (830)
T PRK12904 78 LGM-RHFDVQLIGGM-VLHEGK--IAEMKTGEGKTLVATLPAYLNALT-------------------------------- 121 (830)
T ss_pred hCC-CCCccHHHhhH-HhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc--------------------------------
Confidence 354 68899998874 666663 899999999999999999633322
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHhC
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 944 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~~ 944 (1493)
+..+-|++||..||.|.++.+..+..++++++++++|+++...+.... .+||++|||++| .|+|+.+
T Consensus 122 ----------G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~ 189 (830)
T PRK12904 122 ----------GKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDN 189 (830)
T ss_pred ----------CCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcc
Confidence 123679999999999999999999999999999999999988776664 479999999999 8888765
Q ss_pred cCc-c--ccccceeEEEecccchhccCC----------------ChhHHHHHHHHhcccC--------------------
Q psy16310 945 HFH-L--TELYKINYLVIDETDRMIESG----------------HFPELKNILDRVTMTE-------------------- 985 (1493)
Q Consensus 945 ~~~-~--~~l~~l~~lVlDEah~ll~~~----------------~~~~l~~il~~l~~~~-------------------- 985 (1493)
... . ..++.+.++||||||.|+=+. .+..+..++..|....
T Consensus 190 ~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~ 269 (830)
T PRK12904 190 MVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEK 269 (830)
T ss_pred cccchhhhcccccceEEEechhhheeccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHH
Confidence 321 1 124578999999999863211 1122222222221000
Q ss_pred ---------------------------------CC-----CCceEEEEe---------cccccchHhHHhhhccCcCccc
Q psy16310 986 ---------------------------------TS-----QPRQTFVFS---------ATLTHSLKNSLNLKKGQSKSKK 1018 (1493)
Q Consensus 986 ---------------------------------~~-----~~~q~ll~S---------ATl~~~~~~~~~~~~~~~~~~~ 1018 (1493)
.. .+-.++++- -+++..+.+.+..+-+......
T Consensus 270 ~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e 349 (830)
T PRK12904 270 AEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNE 349 (830)
T ss_pred HHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCC
Confidence 00 001112111 1122333444433222111100
Q ss_pred -ccCCC---chhHH---------------HHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHh---C
Q psy16310 1019 -VSKGD---PSIKR---------------LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ---H 1076 (1493)
Q Consensus 1019 -~~~~~---~~~~~---------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~ 1076 (1493)
..... .++.. -.....+.+-.++.+.........-....+.....+|...+...+.. .
T Consensus 350 ~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~ 429 (830)
T PRK12904 350 NQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKK 429 (830)
T ss_pred ceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhc
Confidence 00000 00000 01111222222333322221111111223444556677777777644 4
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCc----------
Q psy16310 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI---------- 1146 (1493)
Q Consensus 1077 ~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v---------- 1146 (1493)
+.++||||+|+..++.++..|...|++...+||. +.+|+..+..|+.+...|+|||++++||+||+==
T Consensus 430 grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~ 507 (830)
T PRK12904 430 GQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAAL 507 (830)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhh
Confidence 6799999999999999999999999999999996 8899999999999999999999999999999532
Q ss_pred ----------------------------cEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCC
Q psy16310 1147 ----------------------------EHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185 (1493)
Q Consensus 1147 ----------------------------~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e 1185 (1493)
-|||--..|.|..---|-.||+||-|.+|.+-.|++-.|
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 508 LEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 278888889999999999999999999999999987654
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-25 Score=268.61 Aligned_cols=315 Identities=18% Similarity=0.183 Sum_probs=203.4
Q ss_pred CCCCcHHHHhhHHHhhcc---CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 788 FKTPTKIQSMVMPSALLA---RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 788 ~~~pt~iQ~~~i~~~l~~---~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
...|+|+|.+++..+... .+..++++|||+|||.+++..+-...
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~--------------------------------- 80 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK--------------------------------- 80 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc---------------------------------
Confidence 346899999999855543 78999999999999998776554211
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhC
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~ 944 (1493)
..+||||||++|+.|+++.+....... ..++.+.|+..... . ..|.|+|-..+...-
T Consensus 81 ------------~~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~--- 137 (442)
T COG1061 81 ------------RSTLVLVPTKELLDQWAEALKKFLLLN-DEIGIYGGGEKELE------P-AKVTVATVQTLARRQ--- 137 (442)
T ss_pred ------------CCEEEEECcHHHHHHHHHHHHHhcCCc-cccceecCceeccC------C-CcEEEEEhHHHhhhh---
Confidence 129999999999999997777654221 23444444322111 1 369999988876531
Q ss_pred cCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCc
Q psy16310 945 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP 1024 (1493)
Q Consensus 945 ~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~ 1024 (1493)
........+.++||||||||+....+ ..+...+. .....+++|||+++................ ....
T Consensus 138 ~l~~~~~~~~~liI~DE~Hh~~a~~~----~~~~~~~~-----~~~~~LGLTATp~R~D~~~~~~l~~~~g~~---vy~~ 205 (442)
T COG1061 138 LLDEFLGNEFGLIIFDEVHHLPAPSY----RRILELLS-----AAYPRLGLTATPEREDGGRIGDLFDLIGPI---VYEV 205 (442)
T ss_pred hhhhhcccccCEEEEEccccCCcHHH----HHHHHhhh-----cccceeeeccCceeecCCchhHHHHhcCCe---Eeec
Confidence 00111122579999999999876544 34444432 111289999999855422211111000000 0001
Q ss_pred hhHHHHhHhccCCCcEEeccccccccc-----ccee------------------eEEEecccchhhHHHHHHHh--CCCc
Q psy16310 1025 SIKRLQDLLNIKSPKIVDLTEKIGITK-----TLTE------------------SKILCKHDEKDSYLYYFILQ--HPGR 1079 (1493)
Q Consensus 1025 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~------------------~~~~~~~~~k~~~l~~~l~~--~~~~ 1079 (1493)
....+...-.+.+..+..+........ .... .........+...+...+.. ...+
T Consensus 206 ~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (442)
T COG1061 206 SLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDK 285 (442)
T ss_pred CHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCc
Confidence 112222212222222222211100000 0000 00111112222233333333 3579
Q ss_pred EEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChh
Q psy16310 1080 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159 (1493)
Q Consensus 1080 ~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~ 1159 (1493)
++|||.+..++..++..|...+. +..+.|..+..+|..++++|+.|.+++||++.++.+|+|+|+++++|...++.|..
T Consensus 286 ~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~ 364 (442)
T COG1061 286 TLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRR 364 (442)
T ss_pred EEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHH
Confidence 99999999999999999988877 88899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCC
Q psy16310 1160 IYIHRSGRTARA 1171 (1493)
Q Consensus 1160 ~yiqr~GR~gR~ 1171 (1493)
.|+||+||.-|.
T Consensus 365 ~~~Q~lGR~LR~ 376 (442)
T COG1061 365 LFIQRLGRGLRP 376 (442)
T ss_pred HHHHHhhhhccC
Confidence 999999999994
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-25 Score=270.53 Aligned_cols=404 Identities=18% Similarity=0.200 Sum_probs=247.2
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHH-HHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhh
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL-TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 247 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1493)
.|. .|+++|.-..- +|..| -|+.++||+|||++|++|++ +.+.
T Consensus 78 lg~-~~~dvQlig~l-~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~-------------------------------- 121 (830)
T PRK12904 78 LGM-RHFDVQLIGGM-VLHEG--KIAEMKTGEGKTLVATLPAYLNALT-------------------------------- 121 (830)
T ss_pred hCC-CCCccHHHhhH-HhcCC--chhhhhcCCCcHHHHHHHHHHHHHc--------------------------------
Confidence 355 69999988774 66665 48899999999999999995 4441
Q ss_pred cchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHc
Q psy16310 248 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQL 326 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~ 326 (1493)
+..+-|++||..||.|.++.+..+...+|+++++++|+++...+..... +||+++||++| .++|..
T Consensus 122 -----------G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~--~dI~ygT~~elgfDyLrd 188 (830)
T PRK12904 122 -----------GKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA--ADITYGTNNEFGFDYLRD 188 (830)
T ss_pred -----------CCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC--CCeEEECCcchhhhhhhc
Confidence 2237799999999999999999999999999999999999887766653 79999999999 888875
Q ss_pred CCcc-c--cccccccEEEEecCchhhhcC-C---------------hhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 327 GHFH-L--TELYKINYLVIDETDRMIESG-H---------------FPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 327 ~~~~-~--~~l~~i~~lViDEAh~ll~~~-~---------------~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
.... . ..++.+.++||||||.||=.. . +..+..+...+... .+
T Consensus 189 ~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~------------~d------ 250 (830)
T PRK12904 189 NMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKE------------GD------ 250 (830)
T ss_pred ccccchhhhcccccceEEEechhhheeccCCCceeeECCCCcccHHHHHHHHHHHhcCCC------------CC------
Confidence 5321 0 124578999999999987321 1 11222222222100 00
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCC-chhhhHHhhh------hccCCcc------cch
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD-PSIKRLQDLL------NIKSPKI------VDL 454 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~------~~~ 454 (1493)
+.. ....+.+.++..=...+..++.. .. ...... .....+...+ .....++ .-+
T Consensus 251 ----y~v---de~~~~v~lte~G~~~~e~~~~~----~~--ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~iv 317 (830)
T PRK12904 251 ----YTV---DEKSRTVGLTEEGIEKAEKLLGI----EN--LYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIV 317 (830)
T ss_pred ----eEE---EcCCCeeeECHHHHHHHHHHhCC----cc--ccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEE
Confidence 000 01112222222111111111110 00 000000 0000000000 0000000 000
Q ss_pred ---hhhhccccccc----hh------hhhhccC---CcchhhHHH----HhcCCCcchhhHHHhhhhccCCccccccccc
Q psy16310 455 ---TEKIGITKTLT----ES------KILCKHD---EKDSYLYYF----ILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514 (1493)
Q Consensus 455 ---~~~~~~~~~~~----~~------~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1493)
++.......+. +. ....... ..-.+..+| -...-..+.......+...+.-.+.......
T Consensus 318 De~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnk 397 (830)
T PRK12904 318 DEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNR 397 (830)
T ss_pred ECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCC
Confidence 00000000000 00 0000000 000111111 1111122333334445555555444444433
Q ss_pred cccccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHh
Q psy16310 515 GITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 591 (1493)
Q Consensus 515 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr 591 (1493)
..........+......|...+...+.. .+.++||||+|...++.|+.+|...+++...+||. +.+|...+..|+
T Consensus 398 p~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~A 475 (830)
T PRK12904 398 PMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQA 475 (830)
T ss_pred CeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhc
Confidence 3333333334455566778888777744 35799999999999999999999999999999995 889999999999
Q ss_pred cCCCeEEEEechhhccCCCCCC--------------------------------------cEEEEecCCCChHHHHHHHh
Q psy16310 592 DQNNSILLATDVAARGLDIPGI--------------------------------------EHVIHYHVPRTSEIYIHRSG 633 (1493)
Q Consensus 592 ~g~~~VLVaTdv~~rGlDip~v--------------------------------------~~VI~yd~P~s~~~yiQR~G 633 (1493)
.+...|+||||+|+||+||+== =|||-...|.|..---|-.|
T Consensus 476 g~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrG 555 (830)
T PRK12904 476 GRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRG 555 (830)
T ss_pred CCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhc
Confidence 9999999999999999999632 17888899999999999999
Q ss_pred ccccCCCCCeEEEEecCCcch
Q psy16310 634 RTARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 634 RagR~g~~G~~i~l~~~~e~~ 654 (1493)
||||-|.+|.+-.+++-+|--
T Consensus 556 RagRQGdpGss~f~lSleD~l 576 (830)
T PRK12904 556 RSGRQGDPGSSRFYLSLEDDL 576 (830)
T ss_pred ccccCCCCCceeEEEEcCcHH
Confidence 999999999999999876643
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=263.18 Aligned_cols=348 Identities=17% Similarity=0.229 Sum_probs=231.3
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..|+++|.-+-- ++..|+ |+.+.||+|||+++.+|++...+.
T Consensus 79 ~~~~dvQlig~l-~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~----------------------------------- 120 (796)
T PRK12906 79 LRPFDVQIIGGI-VLHEGN--IAEMKTGEGKTLTATLPVYLNALT----------------------------------- 120 (796)
T ss_pred CCCchhHHHHHH-HHhcCC--cccccCCCCCcHHHHHHHHHHHHc-----------------------------------
Confidence 478999998874 666665 899999999999999998876643
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHH-HHHHhCcC-
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW-EFIQLGHF- 946 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~-~~l~~~~~- 946 (1493)
|..+-|++||--||.|.++.+..+...+|++++++.|+.+........ .+||+.+|...|- |.|+.+..
T Consensus 121 -------G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~ 191 (796)
T PRK12906 121 -------GKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVV 191 (796)
T ss_pred -------CCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhcccc
Confidence 345999999999999999999999999999999999988776654443 4699999998774 34443211
Q ss_pred --ccccccceeEEEecccchhccC-C---------------ChhHHHHHHHHhcccC-----------------------
Q psy16310 947 --HLTELYKINYLVIDETDRMIES-G---------------HFPELKNILDRVTMTE----------------------- 985 (1493)
Q Consensus 947 --~~~~l~~l~~lVlDEah~ll~~-~---------------~~~~l~~il~~l~~~~----------------------- 985 (1493)
.......+.+.|+||+|.++=+ . .+..+..++..+....
T Consensus 192 ~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~ 271 (796)
T PRK12906 192 YKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTIS 271 (796)
T ss_pred chhhhhccCcceeeeccchheeeccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCcee
Confidence 0011345789999999986311 1 1111222222111000
Q ss_pred -------------------CC---------------------------CCceEEEEe---------cccccchHhHHhhh
Q psy16310 986 -------------------TS---------------------------QPRQTFVFS---------ATLTHSLKNSLNLK 1010 (1493)
Q Consensus 986 -------------------~~---------------------------~~~q~ll~S---------ATl~~~~~~~~~~~ 1010 (1493)
.. .+-.++++- -+++..+.+.+..+
T Consensus 272 lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaK 351 (796)
T PRK12906 272 LTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAK 351 (796)
T ss_pred ecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHh
Confidence 00 001122221 11223334444333
Q ss_pred ccCcCcccc-cCCCchhHHH------------------HhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHH
Q psy16310 1011 KGQSKSKKV-SKGDPSIKRL------------------QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYY 1071 (1493)
Q Consensus 1011 ~~~~~~~~~-~~~~~~~~~l------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 1071 (1493)
.+....... ....-....+ .....+.+-.++.+.........-....+......|...+..
T Consensus 352 e~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~ 431 (796)
T PRK12906 352 EGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVK 431 (796)
T ss_pred cCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHH
Confidence 221111000 0000000000 011112222223322221111111122234445567777777
Q ss_pred HHHh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccC---CC
Q psy16310 1072 FILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI---PG 1145 (1493)
Q Consensus 1072 ~l~~---~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDi---p~ 1145 (1493)
.+.. .+.++||||+|+..++.++..|...|++...+||++.+.++..+...++.|. |+|||++++||+|| ++
T Consensus 432 ~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~ 509 (796)
T PRK12906 432 EIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPG 509 (796)
T ss_pred HHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcc
Confidence 6643 4789999999999999999999999999999999999888888888887777 99999999999999 48
Q ss_pred cc-----EEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCC
Q psy16310 1146 IE-----HVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185 (1493)
Q Consensus 1146 v~-----~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e 1185 (1493)
|. |||+++.|.+...|.|++|||||.|.+|.+..|++..|
T Consensus 510 V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 510 VKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred hhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 99 99999999999999999999999999999999998765
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-25 Score=279.04 Aligned_cols=121 Identities=20% Similarity=0.370 Sum_probs=110.8
Q ss_pred ccCchhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHH-HhcCCCccccccCCCHHHHHHHHHHHhcC--CCeEEEEech
Q psy16310 528 KHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLL-TMLKCSPLPLHASMNQRQRLKNLDRFRDQ--NNSILLATDV 603 (1493)
Q Consensus 528 ~~~~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L-~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g--~~~VLVaTdv 603 (1493)
..+.|...|..++... +.++||||+++.++..+.+.| ...|+.+..+||+|++.+|.++++.|+++ ..+|||||++
T Consensus 476 ~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdv 555 (956)
T PRK04914 476 NFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEI 555 (956)
T ss_pred ccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechh
Confidence 3456888888888765 679999999999999999999 46699999999999999999999999984 5999999999
Q ss_pred hhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEe
Q psy16310 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648 (1493)
Q Consensus 604 ~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~ 648 (1493)
+++|+|++.+++||+||+|.|+..|+||+||+||.|.+|.+.+++
T Consensus 556 gseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~ 600 (956)
T PRK04914 556 GSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHV 600 (956)
T ss_pred hccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999999999999998776665
|
|
| >KOG0947|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-25 Score=262.92 Aligned_cols=383 Identities=16% Similarity=0.127 Sum_probs=232.4
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
..| .|..+|++||- .+..|..|+|.|+|.+|||+++-..|.-.
T Consensus 294 ~pF-elD~FQk~Ai~-~lerg~SVFVAAHTSAGKTvVAEYAiala----------------------------------- 336 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIY-HLERGDSVFVAAHTSAGKTVVAEYAIALA----------------------------------- 336 (1248)
T ss_pred CCC-CccHHHHHHHH-HHHcCCeEEEEecCCCCcchHHHHHHHHH-----------------------------------
Confidence 455 58899999996 78889999999999999999865544311
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 328 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~ 328 (1493)
...+.|+++.+|-++|.+|-++.|+.-... +++++|+...+. .+.++|+|.++|..+|.++.
T Consensus 337 -------q~h~TR~iYTSPIKALSNQKfRDFk~tF~D----vgLlTGDvqinP-------eAsCLIMTTEILRsMLYrga 398 (1248)
T KOG0947|consen 337 -------QKHMTRTIYTSPIKALSNQKFRDFKETFGD----VGLLTGDVQINP-------EASCLIMTTEILRSMLYRGA 398 (1248)
T ss_pred -------HhhccceEecchhhhhccchHHHHHHhccc----cceeecceeeCC-------CcceEeehHHHHHHHHhccc
Confidence 123457999999999999999999887654 338899865443 36899999999999998765
Q ss_pred ccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEee
Q psy16310 329 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 408 (1493)
Q Consensus 329 ~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SA 408 (1493)
.- ++++++|||||+|.+-+..++-.++.++-.+ |...++|++||
T Consensus 399 dl---iRDvE~VIFDEVHYiND~eRGvVWEEViIMl---------------------------------P~HV~~IlLSA 442 (1248)
T KOG0947|consen 399 DL---IRDVEFVIFDEVHYINDVERGVVWEEVIIML---------------------------------PRHVNFILLSA 442 (1248)
T ss_pred ch---hhccceEEEeeeeecccccccccceeeeeec---------------------------------cccceEEEEec
Confidence 43 4579999999999998888887777777655 56689999999
Q ss_pred ccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCC
Q psy16310 409 TLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP 488 (1493)
Q Consensus 409 Tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (1493)
|+|+.....-++.....+...+........ |.-..+.....+.+.+.+..+++.......+... ..+
T Consensus 443 TVPN~~EFA~WIGRtK~K~IyViST~kRPV----------PLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~---~~~ 509 (1248)
T KOG0947|consen 443 TVPNTLEFADWIGRTKQKTIYVISTSKRPV----------PLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSL---KKE 509 (1248)
T ss_pred cCCChHHHHHHhhhccCceEEEEecCCCcc----------ceEEEEEeccceehhhcccchhhhhcchhhhhhh---ccc
Confidence 999876433322222222111111100000 0000000000000001111111111111110000 000
Q ss_pred CcchhhH-HHhhhhccCCccccccccccccccccccccccccC---chhhHHHHHHhhC-CCcEEEEecchhhHHHHHHH
Q psy16310 489 GRTLCEE-IQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD---EKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQL 563 (1493)
Q Consensus 489 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~ 563 (1493)
....... ..........+ ...............-..... .-...+...|... --++||||-|+..|+..+.+
T Consensus 510 ak~~~~~~~~~~~~rgs~~---~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~ 586 (1248)
T KOG0947|consen 510 AKFVDVEKSDARGGRGSQK---RGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADY 586 (1248)
T ss_pred ccccccccccccccccccc---cCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHH
Confidence 0000000 00000000000 000000000000000000001 1123344444433 46999999999999999988
Q ss_pred HHhc---------------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechh
Q psy16310 564 LTML---------------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604 (1493)
Q Consensus 564 L~~~---------------------------------------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~ 604 (1493)
|... .-++++||||+-+--+.-+.-.|..|-++||+||.++
T Consensus 587 L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETF 666 (1248)
T KOG0947|consen 587 LTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETF 666 (1248)
T ss_pred HhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhh
Confidence 8332 2456789999999999999999999999999999999
Q ss_pred hccCCCCCCcEEEEe----c----CCCChHHHHHHHhccccCCCC--CeEEEEecCCcchhhhhh
Q psy16310 605 ARGLDIPGIEHVIHY----H----VPRTSEIYIHRSGRTARANNE--GLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 605 ~rGlDip~v~~VI~y----d----~P~s~~~yiQR~GRagR~g~~--G~~i~l~~~~e~~~~~~l 659 (1493)
+.|+|+|.-.+|+.- | --.++-+|.|++|||||.|-. |.++++.... ++....+
T Consensus 667 AMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~-vp~~a~l 730 (1248)
T KOG0947|consen 667 AMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS-VPSAATL 730 (1248)
T ss_pred hhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC-CCCHHHH
Confidence 999999987777631 1 124688999999999998875 8877766443 4544444
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=239.12 Aligned_cols=192 Identities=42% Similarity=0.711 Sum_probs=167.6
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchh
Q psy16310 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLE 849 (1493)
Q Consensus 770 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~ 849 (1493)
|+++++++.+.+.|.+.||+.|+++|.++++.++ .|+|+++++|||+|||++|++|+++.+....
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~-~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-------------- 65 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLL-SGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-------------- 65 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCcEEEECCCCCcHHHHHHHHHHHHHHhhc--------------
Confidence 7889999999999999999999999999998655 5899999999999999999999998875421
Q ss_pred HHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcE
Q psy16310 850 EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 929 (1493)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~I 929 (1493)
...+++++|++||++|+.|+.+.++.+....++.+..++|+.........+..+++|
T Consensus 66 -----------------------~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 122 (203)
T cd00268 66 -----------------------KKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHI 122 (203)
T ss_pred -----------------------ccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCE
Confidence 134578999999999999999999999888889999999999887776667668899
Q ss_pred EEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 930 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 930 lV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
+|+||++|.+++..+. ..+.+++++|+||||++.+.++...+..++..+. ...|++++|||+++.....+
T Consensus 123 iv~T~~~l~~~l~~~~---~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~-----~~~~~~~~SAT~~~~~~~~~ 192 (203)
T cd00268 123 VVATPGRLLDLLERGK---LDLSKVKYLVLDEADRMLDMGFEDQIREILKLLP-----KDRQTLLFSATMPKEVRDLA 192 (203)
T ss_pred EEEChHHHHHHHHcCC---CChhhCCEEEEeChHHhhccChHHHHHHHHHhCC-----cccEEEEEeccCCHHHHHHH
Confidence 9999999999988665 3466889999999999998889888988888773 57999999999997766554
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=237.52 Aligned_cols=192 Identities=42% Similarity=0.726 Sum_probs=165.8
Q ss_pred ccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccch
Q psy16310 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLE 232 (1493)
Q Consensus 153 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~ 232 (1493)
|+++++++.+.+.+.+.|++.|+++|.++++. +..++|+++++|||+|||++|++|+++++....
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-------------- 65 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPP-LLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-------------- 65 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc--------------
Confidence 67899999999999999999999999999985 556899999999999999999999998885421
Q ss_pred HHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCE
Q psy16310 233 EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHI 312 (1493)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~I 312 (1493)
...+++++|++||++|+.|+...+..+....++.+..++|+.........+..+++|
T Consensus 66 -----------------------~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 122 (203)
T cd00268 66 -----------------------KKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHI 122 (203)
T ss_pred -----------------------ccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCE
Confidence 124578999999999999999999999888889999999999887777777678899
Q ss_pred EEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhc
Q psy16310 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392 (1493)
Q Consensus 313 iV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (1493)
+|+||+.|.+++.+... .+.+++++|+||||++.+.++...+..++..+.
T Consensus 123 iv~T~~~l~~~l~~~~~---~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~--------------------------- 172 (203)
T cd00268 123 VVATPGRLLDLLERGKL---DLSKVKYLVLDEADRMLDMGFEDQIREILKLLP--------------------------- 172 (203)
T ss_pred EEEChHHHHHHHHcCCC---ChhhCCEEEEeChHHhhccChHHHHHHHHHhCC---------------------------
Confidence 99999999999887653 355889999999999988888888888887652
Q ss_pred cccCCCCCceEEEEeeccchhhhhhh
Q psy16310 393 TMTETSQPRQTFVFSATLTHSLKNSL 418 (1493)
Q Consensus 393 ~~~~~~~~~q~il~SATl~~~~~~~~ 418 (1493)
..+|++++|||+++.+..++
T Consensus 173 ------~~~~~~~~SAT~~~~~~~~~ 192 (203)
T cd00268 173 ------KDRQTLLFSATMPKEVRDLA 192 (203)
T ss_pred ------cccEEEEEeccCCHHHHHHH
Confidence 35799999999998776554
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=261.33 Aligned_cols=102 Identities=18% Similarity=0.280 Sum_probs=83.1
Q ss_pred HHHHHHHHHhc--CCCccccccCCCHHHH--HHHHHHHhcCCCeEEEEechhhccCCCCCCcEEE--EecCCC-------
Q psy16310 557 VKRLTQLLTML--KCSPLPLHASMNQRQR--LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI--HYHVPR------- 623 (1493)
Q Consensus 557 a~~L~~~L~~~--~~~~~~lhg~~~~~~R--~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI--~yd~P~------- 623 (1493)
++++.+.|... +.++..+|+++++.++ ..+++.|++|+.+|||+|+++++|+|+|+|++|+ ++|...
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra 350 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRA 350 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccch
Confidence 57777778766 6788899999987766 8999999999999999999999999999999985 555432
Q ss_pred ---ChHHHHHHHhccccCCCCCeEEEEecCCcchhhhh
Q psy16310 624 ---TSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTK 658 (1493)
Q Consensus 624 ---s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~ 658 (1493)
....|+|++||+||++..|.+++.....+.+....
T Consensus 351 ~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~~~~~~ 388 (505)
T TIGR00595 351 AERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNHPAIQA 388 (505)
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCCHHHHH
Confidence 24678999999999999999987665555444433
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=266.41 Aligned_cols=414 Identities=15% Similarity=0.202 Sum_probs=239.2
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
|. .|+++|.-..- +|..|+ |+.+.||+|||+++.+|++-..+
T Consensus 78 g~-~~~dvQlig~l-~l~~G~--iaEm~TGEGKTLvA~l~a~l~al---------------------------------- 119 (796)
T PRK12906 78 GL-RPFDVQIIGGI-VLHEGN--IAEMKTGEGKTLTATLPVYLNAL---------------------------------- 119 (796)
T ss_pred CC-CCchhHHHHHH-HHhcCC--cccccCCCCCcHHHHHHHHHHHH----------------------------------
Confidence 55 69999988774 666664 88999999999999999875553
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHH-HHHHcCC
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW-EFIQLGH 328 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~-~~l~~~~ 328 (1493)
.|..|-|++||--||.|-+..+..+...+|+++++++|+++........ .+||+.+|..-|- +.|....
T Consensus 120 --------~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m 189 (796)
T PRK12906 120 --------TGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNM 189 (796)
T ss_pred --------cCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhcc
Confidence 3456999999999999999999999999999999999998777665544 4699999998763 3333221
Q ss_pred c---cccccccccEEEEecCchhhhc-CC---------------hhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 329 F---HLTELYKINYLVIDETDRMIES-GH---------------FPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 329 ~---~~~~l~~i~~lViDEAh~ll~~-~~---------------~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
. .-.....+.+.||||+|.+|=. .. +..+..+...+...... .....-..+++
T Consensus 190 ~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~-~~~~~~~~~dy------- 261 (796)
T PRK12906 190 VVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAE-DGDDDEDTGDY------- 261 (796)
T ss_pred ccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhc-cccccCCCCce-------
Confidence 0 0111345789999999997622 11 11222222222111000 00000000000
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCC-chhhhHHhh------hhccCCc------ccch--
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD-PSIKRLQDL------LNIKSPK------IVDL-- 454 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~------~~~~-- 454 (1493)
... ... +.+.++..=-..+..++.+. . ...... .....+... +...... +.-+
T Consensus 262 ---~id--~~~-k~v~lte~G~~~~e~~~~i~----~--l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~ 329 (796)
T PRK12906 262 ---KID--EKT-KTISLTEQGIRKAEKLFGLD----N--LYDSENTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDE 329 (796)
T ss_pred ---EEE--ccc-CceeecHHHHHHHHHHcCCc----c--ccCchhhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeC
Confidence 000 011 11111110000111111000 0 000000 000000000 0000000 0000
Q ss_pred -hhhhccccccc----hh------hhhhccCC---cchhhHHH----HhcCCCcchhhHHHhhhhccCCccccccccccc
Q psy16310 455 -TEKIGITKTLT----ES------KILCKHDE---KDSYLYYF----ILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGI 516 (1493)
Q Consensus 455 -~~~~~~~~~~~----~~------~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1493)
++.......+. +. ....+... .-.+..+| -...-..+.......+...+.-.+.........
T Consensus 330 ~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~ 409 (796)
T PRK12906 330 FTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPV 409 (796)
T ss_pred CCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEEcCCCCCe
Confidence 00000000000 00 00000000 00111111 011111222233333444444444333333322
Q ss_pred cccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC
Q psy16310 517 TKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 593 (1493)
Q Consensus 517 ~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g 593 (1493)
........++.....|...+...+.. .+.++||||+|...++.|+..|...+++...+||.+.+.++..+..+++.|
T Consensus 410 ~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g 489 (796)
T PRK12906 410 IRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRG 489 (796)
T ss_pred eeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCc
Confidence 22222333444556677777777743 467999999999999999999999999999999999988888888877777
Q ss_pred CCeEEEEechhhccCCCC---CCc-----EEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcc
Q psy16310 594 NNSILLATDVAARGLDIP---GIE-----HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653 (1493)
Q Consensus 594 ~~~VLVaTdv~~rGlDip---~v~-----~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~ 653 (1493)
. |+|||++|+||+||+ +|. +||+++.|.|...|.|++|||||.|.+|.+..|++.+|-
T Consensus 490 ~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 490 A--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred e--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 6 999999999999994 899 999999999999999999999999999999999988763
|
|
| >KOG2340|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.9e-25 Score=245.46 Aligned_cols=394 Identities=19% Similarity=0.217 Sum_probs=277.1
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCC---ch--hHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHH
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGS---GK--TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 244 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGS---GK--Tl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1493)
.-..+|+.|.+.+. ++.+++|++. ||+| |+ +-+|||++++|+++.+. .+..+..++..
T Consensus 213 ~s~pltalQ~~L~~-~m~~YrDl~y--~~~s~kn~~e~R~lYclH~lNHi~K~r~--------------~IL~Nn~r~~S 275 (698)
T KOG2340|consen 213 KSEPLTALQKELFK-IMFNYRDLLY--PTRSQKNGEEYRSLYCLHALNHILKTRD--------------LILGNNRRLAS 275 (698)
T ss_pred ccCcchHHHHHHHH-HHHhhhhhcc--ccccccccchhhhhHHHHHHHHHHHHHH--------------HHhcchHhhhh
Confidence 33568999999996 7889999985 4444 44 56899999999998542 33333333322
Q ss_pred h---hhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCe-E--E------EEEEcC-C-------CHHHHHH
Q psy16310 245 E---SANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPV-K--V------ACVVGG-M-------STEKQLR 304 (1493)
Q Consensus 245 ~---~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i-~--v------~~~~G~-~-------~~~~~~~ 304 (1493)
+ -.+..++++++.++|+||||||+|+-|..+.+.+..+..+..- + | ..-++| + .......
T Consensus 276 qk~g~~~~~~frDQG~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~ 355 (698)
T KOG2340|consen 276 QKEGENPDESFRDQGFTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFE 355 (698)
T ss_pred hhcCCCCchhhhhcCCCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHH
Confidence 2 2556789999999999999999999999999999887433221 0 0 011111 0 0111111
Q ss_pred Hh-------------------------cCCCCEEEeCcHHHHHHHH---cCCccccccccccEEEEecCchhhhcCChhh
Q psy16310 305 IL-------------------------NKCPHILVATPGRLWEFIQ---LGHFHLTELYKINYLVIDETDRMIESGHFPE 356 (1493)
Q Consensus 305 ~l-------------------------~~~~~IiV~TP~~L~~~l~---~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~ 356 (1493)
.+ ....|||||+|-.|..++. ....+.++|++|.++|||-||.|+ ++.|++
T Consensus 356 ~lf~GNtDD~FriGl~ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l-~QNwEh 434 (698)
T KOG2340|consen 356 ELFSGNTDDAFRIGLAFTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML-MQNWEH 434 (698)
T ss_pred HHhcCCCcchhhhhHHHHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH-HhhHHH
Confidence 11 1225899999999998887 345567789999999999999776 789999
Q ss_pred HHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCch
Q psy16310 357 LKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS 436 (1493)
Q Consensus 357 l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (1493)
+..|++.++..|. ..|..++.++++|+...++...+|+++||+...+....++...-
T Consensus 435 l~~ifdHLn~~P~---------k~h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c-------------- 491 (698)
T KOG2340|consen 435 LLHIFDHLNLQPS---------KQHDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYC-------------- 491 (698)
T ss_pred HHHHHHHhhcCcc---------cccCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhh--------------
Confidence 9999999988765 34788999999999999999999999999988766554442111
Q ss_pred hhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccc
Q psy16310 437 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGI 516 (1493)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1493)
.+..+.+......... .+..... .++..
T Consensus 492 ---------------~N~~Gkv~~~~~~~~g-si~~v~~---------------~l~Qv--------------------- 519 (698)
T KOG2340|consen 492 ---------------QNMAGKVKARNLQSGG-SISNVGI---------------PLCQV--------------------- 519 (698)
T ss_pred ---------------hhhcceeeeccccCCC-chhhccc---------------hhhhh---------------------
Confidence 1111111110000000 0000000 00000
Q ss_pred cccccccccccccCchhhHHHHHHhhC-----CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHh
Q psy16310 517 TKTLTESKILCKHDEKDSYLYYFILQH-----PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 591 (1493)
Q Consensus 517 ~~~~~~~~~~~~~~~k~~~l~~~l~~~-----~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr 591 (1493)
...+....+....+.++.++...+... ...+|||++++.+..++..+++...+.+..+|...+..+-.++.+.|-
T Consensus 520 f~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~ 599 (698)
T KOG2340|consen 520 FQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFF 599 (698)
T ss_pred hhheeccCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHH
Confidence 011122233344556666665554332 357899999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEechhh--ccCCCCCCcEEEEecCCCChHHH---HHHHhccccCCC----CCeEEEEecCCcchhh
Q psy16310 592 DQNNSILLATDVAA--RGLDIPGIEHVIHYHVPRTSEIY---IHRSGRTARANN----EGLTVVLIESDEIPLK 656 (1493)
Q Consensus 592 ~g~~~VLVaTdv~~--rGlDip~v~~VI~yd~P~s~~~y---iQR~GRagR~g~----~G~~i~l~~~~e~~~~ 656 (1493)
.|..+||+.|..++ |..+|.+|..||+|.+|.++..| +.+.||+.--|+ .-.|.++|+.-|....
T Consensus 600 qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~L 673 (698)
T KOG2340|consen 600 QGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRL 673 (698)
T ss_pred hcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHH
Confidence 99999999999998 99999999999999999999887 567777764442 3578888887665443
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.6e-24 Score=269.93 Aligned_cols=335 Identities=20% Similarity=0.229 Sum_probs=198.3
Q ss_pred CCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcch
Q psy16310 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250 (1493)
Q Consensus 171 ~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1493)
...|+|+|..+.. ...++..+|+.||||+|||.++++.+.. +...
T Consensus 284 ~~~p~p~Q~~~~~-~~~~pgl~ileApTGsGKTEAAL~~A~~-l~~~--------------------------------- 328 (878)
T PRK09694 284 GYQPRQLQTLVDA-LPLQPGLTIIEAPTGSGKTEAALAYAWR-LIDQ--------------------------------- 328 (878)
T ss_pred CCCChHHHHHHHh-hccCCCeEEEEeCCCCCHHHHHHHHHHH-HHHh---------------------------------
Confidence 3479999998864 3334568999999999999998776553 3211
Q ss_pred hhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCC--CCeEEEEEEcCCCHHHHH---------------------HHhc
Q psy16310 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY--TPVKVACVVGGMSTEKQL---------------------RILN 307 (1493)
Q Consensus 251 ~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~--~~i~v~~~~G~~~~~~~~---------------------~~l~ 307 (1493)
....+++|.+||+++++|++..+..+... ...++.+++|.......+ ..+.
T Consensus 329 ------~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 402 (878)
T PRK09694 329 ------GLADSIIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLS 402 (878)
T ss_pred ------CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHh
Confidence 12246999999999999999988753321 134677777764322111 1111
Q ss_pred ---C---CCCEEEeCcHHHHHHHHcC-Ccccc--ccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccc
Q psy16310 308 ---K---CPHILVATPGRLWEFIQLG-HFHLT--ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIE 378 (1493)
Q Consensus 308 ---~---~~~IiV~TP~~L~~~l~~~-~~~~~--~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~ 378 (1493)
+ -.+|+|||...++..+... +..+. .| .-++|||||+|.+ +......+..+++.+..
T Consensus 403 ~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L-a~svvIiDEVHAy-D~ym~~lL~~~L~~l~~------------ 468 (878)
T PRK09694 403 QSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL-GRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQ------------ 468 (878)
T ss_pred hhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh-ccCeEEEechhhC-CHHHHHHHHHHHHHHHh------------
Confidence 1 1589999998776544322 11111 11 1258999999966 43333445555544321
Q ss_pred cCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhh
Q psy16310 379 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI 458 (1493)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (1493)
....+|+||||+|..+...+.-..+...........|
T Consensus 469 --------------------~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YP----------------------- 505 (878)
T PRK09694 469 --------------------AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYP----------------------- 505 (878)
T ss_pred --------------------cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccc-----------------------
Confidence 2346999999999876543311000000000000000
Q ss_pred ccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccc-ccccCchhhHHH
Q psy16310 459 GITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKI-LCKHDEKDSYLY 537 (1493)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~l~ 537 (1493)
.+....... . .. ......+. .......+.-... ..........+.
T Consensus 506 ----------lvt~~~~~~-~----------~~-------~~~~~~~~------~~~~~~~v~v~~~~~~~~~~~~~~l~ 551 (878)
T PRK09694 506 ----------LITWRGVNG-A----------QR-------FDLSAHPE------QLPARFTIQLEPICLADMLPDLTLLQ 551 (878)
T ss_pred ----------ccccccccc-c----------ee-------eecccccc------ccCcceEEEEEeeccccccCHHHHHH
Confidence 000000000 0 00 00000000 0000000000000 000011112222
Q ss_pred HHHh--hCCCcEEEEecchhhHHHHHHHHHhcC---CCccccccCCCHHHH----HHHHHHH-hcCC---CeEEEEechh
Q psy16310 538 YFIL--QHPGRTLVFCNSISSVKRLTQLLTMLK---CSPLPLHASMNQRQR----LKNLDRF-RDQN---NSILLATDVA 604 (1493)
Q Consensus 538 ~~l~--~~~~~~IIF~~s~~~a~~L~~~L~~~~---~~~~~lhg~~~~~~R----~~vl~~F-r~g~---~~VLVaTdv~ 604 (1493)
.++. ..++++||||||+..|..+++.|+..+ ..+..+||.++..+| .++++.| ++|+ ..|||||+|+
T Consensus 552 ~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQVi 631 (878)
T PRK09694 552 RMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVV 631 (878)
T ss_pred HHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcch
Confidence 2222 346789999999999999999998764 578999999999999 4678888 6676 4799999999
Q ss_pred hccCCCCCCcEEEEecCCCChHHHHHHHhccccCCC
Q psy16310 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 640 (1493)
Q Consensus 605 ~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~ 640 (1493)
++|||| +++++|....| +..|+||+||++|.++
T Consensus 632 E~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 632 EQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred hheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999 68999999888 6799999999999886
|
|
| >KOG0948|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-25 Score=258.30 Aligned_cols=359 Identities=16% Similarity=0.151 Sum_probs=224.9
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.+.|+|..+|. .+.++..|+|+|.|.+|||.++-..|...+-
T Consensus 129 ~LDpFQ~~aI~-Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr------------------------------------- 170 (1041)
T KOG0948|consen 129 TLDPFQSTAIK-CIDRGESVLVSAHTSAGKTVVAEYAIAMSLR------------------------------------- 170 (1041)
T ss_pred ccCchHhhhhh-hhcCCceEEEEeecCCCcchHHHHHHHHHHH-------------------------------------
Confidence 57899999996 7888999999999999999998777765552
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcccc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~ 332 (1493)
.+-|+++..|-++|.+|-++.+..-.+ .|++.+|+.+.+. .+..+|+|.++|..+|.++.--+
T Consensus 171 -----~kQRVIYTSPIKALSNQKYREl~~EF~----DVGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvm- 233 (1041)
T KOG0948|consen 171 -----EKQRVIYTSPIKALSNQKYRELLEEFK----DVGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVM- 233 (1041)
T ss_pred -----hcCeEEeeChhhhhcchhHHHHHHHhc----ccceeecceeeCC-------CCceeeeHHHHHHHHHhccchHh-
Confidence 234799999999999999999876543 3677888865443 35799999999999998876543
Q ss_pred ccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccch
Q psy16310 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 412 (1493)
Q Consensus 333 ~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~ 412 (1493)
.-+.|+||||.|.|-+..++-.++.-+-. .+...+.+++|||+|+
T Consensus 234 --rEVaWVIFDEIHYMRDkERGVVWEETIIl---------------------------------lP~~vr~VFLSATiPN 278 (1041)
T KOG0948|consen 234 --REVAWVIFDEIHYMRDKERGVVWEETIIL---------------------------------LPDNVRFVFLSATIPN 278 (1041)
T ss_pred --heeeeEEeeeehhccccccceeeeeeEEe---------------------------------ccccceEEEEeccCCC
Confidence 37899999999999776655433332222 2667899999999998
Q ss_pred hhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcch
Q psy16310 413 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 492 (1493)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (1493)
.....-++........-+...+-....++- +-++..-...+.++... ..+ ....+
T Consensus 279 A~qFAeWI~~ihkQPcHVVYTdyRPTPLQH---------------yifP~ggdGlylvVDek--~~F--------rednF 333 (1041)
T KOG0948|consen 279 ARQFAEWICHIHKQPCHVVYTDYRPTPLQH---------------YIFPAGGDGLYLVVDEK--GKF--------REDNF 333 (1041)
T ss_pred HHHHHHHHHHHhcCCceEEeecCCCCccee---------------eeecCCCCeeEEEEecc--ccc--------chHHH
Confidence 654322222211111111111110000000 00000000001110000 000 00001
Q ss_pred hhHHHhhhhccCCccccccccccccccccccc---cccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhc--
Q psy16310 493 CEEIQDLLNIKSPKIVDLTEKIGITKTLTESK---ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML-- 567 (1493)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~-- 567 (1493)
...+..+....... ..... ........ --...+.-...+-..+.....++|||+-|+++|+.++-.+..+
T Consensus 334 ~~am~~l~~~~~~~----~~~~~-~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldf 408 (1041)
T KOG0948|consen 334 QKAMSVLRKAGESD----GKKKA-NKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDF 408 (1041)
T ss_pred HHHHHHhhccCCCc----ccccc-ccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcC
Confidence 11111111100000 00000 00000000 0001112233333444555679999999999999988777332
Q ss_pred -------------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCC
Q psy16310 568 -------------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 610 (1493)
Q Consensus 568 -------------------------------------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDi 610 (1493)
.-+++.||||+-+--..-+.=.|.+|-++||+||.+++.|||+
T Consensus 409 N~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNM 488 (1041)
T KOG0948|consen 409 NTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNM 488 (1041)
T ss_pred CChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCC
Confidence 2456789999999999999999999999999999999999999
Q ss_pred CCCcEEEE----ecCC----CChHHHHHHHhccccCCCC--CeEEEEecCC
Q psy16310 611 PGIEHVIH----YHVP----RTSEIYIHRSGRTARANNE--GLTVVLIESD 651 (1493)
Q Consensus 611 p~v~~VI~----yd~P----~s~~~yiQR~GRagR~g~~--G~~i~l~~~~ 651 (1493)
|.-++|+- ||-- .+.-.|||+.|||||.|.. |.||++++..
T Consensus 489 PAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 489 PAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 98777762 3322 3456899999999998875 8888888664
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=271.02 Aligned_cols=372 Identities=17% Similarity=0.151 Sum_probs=233.8
Q ss_pred HHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhh
Q psy16310 167 YQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 246 (1493)
Q Consensus 167 ~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1493)
...+| .|.++|++++- +|..+..|++|||||||||.++-..+...+
T Consensus 114 ~~~~F-~LD~fQ~~a~~-~Ler~esVlV~ApTssGKTvVaeyAi~~al-------------------------------- 159 (1041)
T COG4581 114 REYPF-ELDPFQQEAIA-ILERGESVLVCAPTSSGKTVVAEYAIALAL-------------------------------- 159 (1041)
T ss_pred HhCCC-CcCHHHHHHHH-HHhCCCcEEEEccCCCCcchHHHHHHHHHH--------------------------------
Confidence 45678 59999999995 888999999999999999999766655433
Q ss_pred hcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHc
Q psy16310 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 326 (1493)
Q Consensus 247 ~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~ 326 (1493)
.++.++++.+|.++|..|.++.|........-.+++++|+.+.+ .++.|+|+|.+.|.+++..
T Consensus 160 ----------~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyr 222 (1041)
T COG4581 160 ----------RDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYR 222 (1041)
T ss_pred ----------HcCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceecceeeC-------CCCceEEeeHHHHHHHhcc
Confidence 23456999999999999999998765432223457788886543 3468999999999999987
Q ss_pred CCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEE
Q psy16310 327 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVF 406 (1493)
Q Consensus 327 ~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~ 406 (1493)
+.. .+..+.+|||||+|.|-+...+..++.++-.+ +...++++|
T Consensus 223 g~~---~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l---------------------------------P~~v~~v~L 266 (1041)
T COG4581 223 GSE---SLRDIEWVVFDEVHYIGDRERGVVWEEVIILL---------------------------------PDHVRFVFL 266 (1041)
T ss_pred Ccc---cccccceEEEEeeeeccccccchhHHHHHHhc---------------------------------CCCCcEEEE
Confidence 743 35589999999999999988888888888766 455799999
Q ss_pred eeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhc
Q psy16310 407 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 486 (1493)
Q Consensus 407 SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (1493)
|||+|+......++...+.....+...+.-. .|....+....++...+.+.. . + ..
T Consensus 267 SATv~N~~EF~~Wi~~~~~~~~~vv~t~~Rp----------vPL~~~~~~~~~l~~lvde~~-------~--~----~~- 322 (1041)
T COG4581 267 SATVPNAEEFAEWIQRVHSQPIHVVSTEHRP----------VPLEHFVYVGKGLFDLVDEKK-------K--F----NA- 322 (1041)
T ss_pred eCCCCCHHHHHHHHHhccCCCeEEEeecCCC----------CCeEEEEecCCceeeeecccc-------c--c----hh-
Confidence 9999986544333222221111111110000 000000000000000000000 0 0 00
Q ss_pred CCCcchhhHHHhhhhccCCccccccc--cccccccccccccccccCch-hhHHHHHHhhCCCcEEEEecchhhHHHHHHH
Q psy16310 487 HPGRTLCEEIQDLLNIKSPKIVDLTE--KIGITKTLTESKILCKHDEK-DSYLYYFILQHPGRTLVFCNSISSVKRLTQL 563 (1493)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~k-~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~ 563 (1493)
.........+.... ........ .......-......+....+ ...+..+......++|+|+-|+..|+..+..
T Consensus 323 ---~~~~~a~~~l~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~ 398 (1041)
T COG4581 323 ---ENFPSANRSLSCFS-EKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQI 398 (1041)
T ss_pred ---hcchhhhhhhhccc-hhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHH
Confidence 00000000000000 00000000 00000000000001111222 3333333344457999999999999987766
Q ss_pred HHhc-----------------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEec
Q psy16310 564 LTML-----------------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 602 (1493)
Q Consensus 564 L~~~-----------------------------------------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTd 602 (1493)
+..+ .-++++||++|-+..+..+...|..|-++|++||.
T Consensus 399 ~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTe 478 (1041)
T COG4581 399 LSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATE 478 (1041)
T ss_pred hcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehh
Confidence 6311 12346799999999999999999999999999999
Q ss_pred hhhccCCCCCCcEEE----Eec----CCCChHHHHHHHhccccCCCC--CeEEEEecCCcc
Q psy16310 603 VAARGLDIPGIEHVI----HYH----VPRTSEIYIHRSGRTARANNE--GLTVVLIESDEI 653 (1493)
Q Consensus 603 v~~rGlDip~v~~VI----~yd----~P~s~~~yiQR~GRagR~g~~--G~~i~l~~~~e~ 653 (1493)
+++.|+|+|.=++|+ .+| .+.++..|+|+.|||||.|-. |.++++..+...
T Consensus 479 T~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~ 539 (1041)
T COG4581 479 TFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFES 539 (1041)
T ss_pred hhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCC
Confidence 999999999776665 222 346789999999999998875 888887555443
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-24 Score=257.44 Aligned_cols=111 Identities=23% Similarity=0.378 Sum_probs=97.3
Q ss_pred hhhHHHHHHhhC--CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCC
Q psy16310 532 KDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 609 (1493)
Q Consensus 532 k~~~l~~~l~~~--~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlD 609 (1493)
+...+...+..+ ..+++|||.+...+..++..|...++ +..+.|..+..+|..+++.|+.|.+++||++.++.+|+|
T Consensus 269 ~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvD 347 (442)
T COG1061 269 KIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVD 347 (442)
T ss_pred HHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceec
Confidence 333444444433 57999999999999999999988877 888999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCChHHHHHHHhcccc-CCCCCe
Q psy16310 610 IPGIEHVIHYHVPRTSEIYIHRSGRTAR-ANNEGL 643 (1493)
Q Consensus 610 ip~v~~VI~yd~P~s~~~yiQR~GRagR-~g~~G~ 643 (1493)
+|+++++|...+..|...|+||+||.-| ...++.
T Consensus 348 iP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 348 IPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred CCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 9999999999999999999999999999 433444
|
|
| >KOG0947|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.8e-24 Score=251.74 Aligned_cols=340 Identities=16% Similarity=0.141 Sum_probs=229.3
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
+|-++|++||- .+..|.+++|.|+|.+|||+++..+|.-.
T Consensus 297 elD~FQk~Ai~-~lerg~SVFVAAHTSAGKTvVAEYAiala--------------------------------------- 336 (1248)
T KOG0947|consen 297 ELDTFQKEAIY-HLERGDSVFVAAHTSAGKTVVAEYAIALA--------------------------------------- 336 (1248)
T ss_pred CccHHHHHHHH-HHHcCCeEEEEecCCCCcchHHHHHHHHH---------------------------------------
Confidence 67889999996 67788999999999999999977665421
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccc
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~ 949 (1493)
...+.+++|-+|-++|-+|-++.|+..+.. +++++|+.... ..+.++|+|.+.|-.+|.++..
T Consensus 337 ---q~h~TR~iYTSPIKALSNQKfRDFk~tF~D----vgLlTGDvqin-------PeAsCLIMTTEILRsMLYrgad--- 399 (1248)
T KOG0947|consen 337 ---QKHMTRTIYTSPIKALSNQKFRDFKETFGD----VGLLTGDVQIN-------PEASCLIMTTEILRSMLYRGAD--- 399 (1248)
T ss_pred ---HhhccceEecchhhhhccchHHHHHHhccc----cceeecceeeC-------CCcceEeehHHHHHHHHhcccc---
Confidence 234568999999999999999999986533 33788876433 3457999999999999988763
Q ss_pred cccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCC---Cch-
Q psy16310 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG---DPS- 1025 (1493)
Q Consensus 950 ~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~---~~~- 1025 (1493)
.++++.+|||||+|-+.+...+-.++.++-.+ |...+++++|||+|+..+-.-+......+...+... .-.
T Consensus 400 liRDvE~VIFDEVHYiND~eRGvVWEEViIMl-----P~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPL 474 (1248)
T KOG0947|consen 400 LIRDVEFVIFDEVHYINDVERGVVWEEVIIML-----PRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPL 474 (1248)
T ss_pred hhhccceEEEeeeeecccccccccceeeeeec-----cccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccce
Confidence 35679999999999998888877888887766 578999999999998765433222111111111110 000
Q ss_pred ---------hHH--------H-------HhHhccCCCcEEecccccccc------ccceeeEEE------ecccch----
Q psy16310 1026 ---------IKR--------L-------QDLLNIKSPKIVDLTEKIGIT------KTLTESKIL------CKHDEK---- 1065 (1493)
Q Consensus 1026 ---------~~~--------l-------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~------~~~~~k---- 1065 (1493)
+.. + ..... ............... ..-...+.. ....++
T Consensus 475 Eh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~-~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~ 553 (1248)
T KOG0947|consen 475 EHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK-KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQP 553 (1248)
T ss_pred EEEEEeccceehhhcccchhhhhcchhhhhhhc-ccccccccccccccccccccccCCcCCCCCCCcccccccccccccc
Confidence 000 0 00010 001111100000000 000000000 001111
Q ss_pred -hhHHHHHHHh-CCCcEEEEecchhhHHHHHHHHHhc---------------------------------------CCCc
Q psy16310 1066 -DSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTML---------------------------------------KCSP 1104 (1493)
Q Consensus 1066 -~~~l~~~l~~-~~~~~IVF~~s~~~~~~l~~~L~~~---------------------------------------~~~~ 1104 (1493)
...++..+.. .--|+||||-+++.|+..+..|... .-++
T Consensus 554 ~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGi 633 (1248)
T KOG0947|consen 554 TWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGI 633 (1248)
T ss_pred hHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcc
Confidence 1222222322 2458999999999999999998543 1357
Q ss_pred cccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEe----cC----CCChhHHHHHHhccCCCCC--C
Q psy16310 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY----HV----PRTSEIYIHRSGRTARANN--E 1174 (1493)
Q Consensus 1105 ~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~----d~----p~s~~~yiqr~GR~gR~g~--~ 1174 (1493)
++|||++-+--++-+...|..|-++||+||.++|+|+|.|.-.+|+.- |- --.+-.|.|++|||||.|- .
T Consensus 634 aVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~t 713 (1248)
T KOG0947|consen 634 AVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDET 713 (1248)
T ss_pred hhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcC
Confidence 789999999999999999999999999999999999999998877741 11 1246789999999999974 6
Q ss_pred CeEEEEecCC--CHHHHHHH
Q psy16310 1175 GLTLVLIESD--EIPLYIKM 1192 (1493)
Q Consensus 1175 G~~i~l~~~~--e~~~~~~~ 1192 (1493)
|.+++++... +...++++
T Consensus 714 GTVii~~~~~vp~~a~l~~l 733 (1248)
T KOG0947|consen 714 GTVIIMCKDSVPSAATLKRL 733 (1248)
T ss_pred ceEEEEecCCCCCHHHHhhH
Confidence 8888887554 44455544
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.8e-24 Score=264.91 Aligned_cols=342 Identities=17% Similarity=0.172 Sum_probs=230.9
Q ss_pred HHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHh
Q psy16310 783 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEE 862 (1493)
Q Consensus 783 l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (1493)
....|| .|-++|++++- +|..|.++++|||||||||+++..++...+.
T Consensus 113 ~~~~~F-~LD~fQ~~a~~-~Ler~esVlV~ApTssGKTvVaeyAi~~al~------------------------------ 160 (1041)
T COG4581 113 AREYPF-ELDPFQQEAIA-ILERGESVLVCAPTSSGKTVVAEYAIALALR------------------------------ 160 (1041)
T ss_pred HHhCCC-CcCHHHHHHHH-HHhCCCcEEEEccCCCCcchHHHHHHHHHHH------------------------------
Confidence 345576 57899999995 8889999999999999999998877765552
Q ss_pred hhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHH
Q psy16310 863 SANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ 942 (1493)
Q Consensus 863 ~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~ 942 (1493)
.+.+++|.+|.++|.+|.++.+........-.+++++|+.+.. ..+.++|+|-+.|-+++.
T Consensus 161 ------------~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMly 221 (1041)
T COG4581 161 ------------DGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLY 221 (1041)
T ss_pred ------------cCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceecceeeC-------CCCceEEeeHHHHHHHhc
Confidence 2335999999999999999999875432223457777765443 346899999999999998
Q ss_pred hCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCC
Q psy16310 943 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 1022 (1493)
Q Consensus 943 ~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~ 1022 (1493)
++. ..+..+..|||||+|.|.+...+...+.++-.+ |...++++||||+|+..+-..+..........+...
T Consensus 222 rg~---~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l-----P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t 293 (1041)
T COG4581 222 RGS---ESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL-----PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVST 293 (1041)
T ss_pred cCc---ccccccceEEEEeeeeccccccchhHHHHHHhc-----CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEee
Confidence 774 346789999999999999998888888888777 477899999999997654433322111111111111
Q ss_pred CchhHHHHhHhccCCCcEEecccccc---------ccccceee-------------EE---------Eecccch-hhHHH
Q psy16310 1023 DPSIKRLQDLLNIKSPKIVDLTEKIG---------ITKTLTES-------------KI---------LCKHDEK-DSYLY 1070 (1493)
Q Consensus 1023 ~~~~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-------------~~---------~~~~~~k-~~~l~ 1070 (1493)
+.....+...+... ..++.+..... ....+... +. .+....+ ...+.
T Consensus 294 ~~RpvPL~~~~~~~-~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~ 372 (1041)
T COG4581 294 EHRPVPLEHFVYVG-KGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVN 372 (1041)
T ss_pred cCCCCCeEEEEecC-CceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHh
Confidence 10000110101000 11111111100 00000000 00 0011111 11222
Q ss_pred HHHHhCCCcEEEEecchhhHHHHHHHHHhc----------------------------C-------------CCcccccc
Q psy16310 1071 YFILQHPGRTLVFCNSISSVKRLTQLLTML----------------------------K-------------CSPLPLHA 1109 (1493)
Q Consensus 1071 ~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~----------------------------~-------------~~~~~lhg 1109 (1493)
.+.....-++|+||-++..|+..+..+..+ + -.+++||+
T Consensus 373 ~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~ 452 (1041)
T COG4581 373 KLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHA 452 (1041)
T ss_pred hhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhcc
Confidence 222334568999999999999888776421 1 13457999
Q ss_pred CCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEE----Eec----CCCChhHHHHHHhccCCCCC--CCeEEE
Q psy16310 1110 SMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI----HYH----VPRTSEIYIHRSGRTARANN--EGLTLV 1179 (1493)
Q Consensus 1110 ~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI----~~d----~p~s~~~yiqr~GR~gR~g~--~G~~i~ 1179 (1493)
+|-+..|..+...|..|-+.|++||.+++.|+|.|.-++|+ .|| .+-+...|.|+.|||||.|- .|.+|+
T Consensus 453 GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~ 532 (1041)
T COG4581 453 GLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIV 532 (1041)
T ss_pred ccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEE
Confidence 99999999999999999999999999999999999877776 233 23467889999999999986 577777
Q ss_pred EecCC
Q psy16310 1180 LIESD 1184 (1493)
Q Consensus 1180 l~~~~ 1184 (1493)
+-.+.
T Consensus 533 ~~~~~ 537 (1041)
T COG4581 533 IEPPF 537 (1041)
T ss_pred ecCCC
Confidence 74443
|
|
| >KOG0926|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-24 Score=251.63 Aligned_cols=344 Identities=22% Similarity=0.272 Sum_probs=215.6
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHH
Q psy16310 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 236 (1493)
Q Consensus 157 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (1493)
.-+++++++-..+-+ .-. .++.. .++..+--+||||.||||||.. +-+.|+...-
T Consensus 243 ~R~~EIQ~sR~~LPI--~ae-Eq~IM-EaIn~n~vvIIcGeTGsGKTTQ----vPQFLYEAGf----------------- 297 (1172)
T KOG0926|consen 243 SRPAEIQESRLDLPI--VAE-EQRIM-EAINENPVVIICGETGSGKTTQ----VPQFLYEAGF----------------- 297 (1172)
T ss_pred cCcHHHHHHHhcCch--hHH-HHHHH-HHhhcCCeEEEecCCCCCcccc----chHHHHHccc-----------------
Confidence 445556555444422 111 12333 4777777789999999999997 3345554211
Q ss_pred HHHHHHHHhhhcchhhhhcc-cCceEEEEEcccHHHHHHHH-HHHHHhcC-CCCeEEEEEEcCCCHHHHHHHhcCCCCEE
Q psy16310 237 EVLEELEEESANTTEFVKKT-RNKLYALILAPTRELAIQVQ-NHILDAGK-YTPVKVACVVGGMSTEKQLRILNKCPHIL 313 (1493)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~-~~~~~aLiL~PTreLa~Qi~-~~~~~l~~-~~~i~v~~~~G~~~~~~~~~~l~~~~~Ii 313 (1493)
.... ..+..+=|.-|.|--|.-+. ++..+++. ...+...+.+.++... ...|.
T Consensus 298 ----------------~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~ti~e--------~T~Ik 353 (1172)
T KOG0926|consen 298 ----------------ASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDGTIGE--------DTSIK 353 (1172)
T ss_pred ----------------CCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEeccccCC--------CceeE
Confidence 1111 12335667778887776654 45566665 2336667777665432 34899
Q ss_pred EeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhcc
Q psy16310 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393 (1493)
Q Consensus 314 V~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (1493)
++|.|.|+..|.+++. |.+++.||+||||.- .-+.+.+-.+|.++-... ....
T Consensus 354 FMTDGVLLrEi~~Dfl----L~kYSvIIlDEAHER--SvnTDILiGmLSRiV~LR---------------------~k~~ 406 (1172)
T KOG0926|consen 354 FMTDGVLLREIENDFL----LTKYSVIILDEAHER--SVNTDILIGMLSRIVPLR---------------------QKYY 406 (1172)
T ss_pred EecchHHHHHHHHhHh----hhhceeEEechhhhc--cchHHHHHHHHHHHHHHH---------------------HHHh
Confidence 9999999999998765 668999999999975 234555666666553221 1111
Q ss_pred -ccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhc
Q psy16310 394 -MTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK 472 (1493)
Q Consensus 394 -~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1493)
..+.-.+..+|+||||+.-. .+. ....++.+..| ++.+. ..+.++.
T Consensus 407 ke~~~~kpLKLIIMSATLRVs--DFt--------------------enk~LFpi~pP-likVd--------ARQfPVs-- 453 (1172)
T KOG0926|consen 407 KEQCQIKPLKLIIMSATLRVS--DFT--------------------ENKRLFPIPPP-LIKVD--------ARQFPVS-- 453 (1172)
T ss_pred hhhcccCceeEEEEeeeEEec--ccc--------------------cCceecCCCCc-eeeee--------cccCceE--
Confidence 11234578999999999521 111 00011111111 11100 0000000
Q ss_pred cCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEec
Q psy16310 473 HDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCN 552 (1493)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~ 552 (1493)
.+|....+...+.+.++....++ . .-.+|.+|||+.
T Consensus 454 --------IHF~krT~~DYi~eAfrKtc~IH---------------------------~---------kLP~G~ILVFvT 489 (1172)
T KOG0926|consen 454 --------IHFNKRTPDDYIAEAFRKTCKIH---------------------------K---------KLPPGGILVFVT 489 (1172)
T ss_pred --------EEeccCCCchHHHHHHHHHHHHh---------------------------h---------cCCCCcEEEEEe
Confidence 11112222222233332222211 1 113689999999
Q ss_pred chhhHHHHHHHHHhc-----------------------------------------------------------------
Q psy16310 553 SISSVKRLTQLLTML----------------------------------------------------------------- 567 (1493)
Q Consensus 553 s~~~a~~L~~~L~~~----------------------------------------------------------------- 567 (1493)
...++..|++.|+..
T Consensus 490 GQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~ 569 (1172)
T KOG0926|consen 490 GQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFN 569 (1172)
T ss_pred ChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhh
Confidence 999999999888221
Q ss_pred ----------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCC
Q psy16310 568 ----------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 613 (1493)
Q Consensus 568 ----------------------------------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v 613 (1493)
..-|+++++-++...|.+++..-..|..-|+|||+||+..|.||+|
T Consensus 570 ~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgI 649 (1172)
T KOG0926|consen 570 ALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGI 649 (1172)
T ss_pred ccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCe
Confidence 0224567888999999999999999999999999999999999999
Q ss_pred cEEEE--------ecCCCChHHH----------HHHHhccccCCCCCeEEEEecCCcch
Q psy16310 614 EHVIH--------YHVPRTSEIY----------IHRSGRTARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 614 ~~VI~--------yd~P~s~~~y----------iQR~GRagR~g~~G~~i~l~~~~e~~ 654 (1493)
.+||. ||--+++..| -||+|||||.| +|+||.||++.-..
T Consensus 650 kYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSAVf~ 707 (1172)
T KOG0926|consen 650 KYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSAVFS 707 (1172)
T ss_pred eEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhHHhh
Confidence 99995 6766666666 59999999998 99999999886554
|
|
| >KOG0950|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.3e-24 Score=254.70 Aligned_cols=364 Identities=20% Similarity=0.220 Sum_probs=252.9
Q ss_pred CCHHHH-HHHHHCCCCCCcHHHHhhH--HHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHH
Q psy16310 775 IPETII-RALYQKGFKTPTKIQSMVM--PSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 851 (1493)
Q Consensus 775 l~~~l~-~~l~~~g~~~pt~iQ~~~i--~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 851 (1493)
+++.+. -..+..|...+..+|..|+ |. +.+++|+|..+||+.|||+++-+.++..++..+
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~-~~e~~nliys~Pts~gktlvaeilml~~~l~~r---------------- 269 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPR-LLERKNLIYSLPTSAGKTLVAEILMLREVLCRR---------------- 269 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchh-hhcccceEEeCCCccchHHHHHHHHHHHHHHHh----------------
Confidence 444444 4456679999999999997 43 448899999999999999999999998876432
Q ss_pred HHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEE
Q psy16310 852 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILV 931 (1493)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV 931 (1493)
..++.+.|....+..-...+..++..+|+.+...+|........ +..++.|
T Consensus 270 -------------------------r~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i 320 (1008)
T KOG0950|consen 270 -------------------------RNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAI 320 (1008)
T ss_pred -------------------------hceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCcc----cceeeee
Confidence 25899999999999999999999999999999888766554332 2347999
Q ss_pred ECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc--hHhHHhh
Q psy16310 932 ATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS--LKNSLNL 1009 (1493)
Q Consensus 932 ~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~--~~~~~~~ 1009 (1493)
||-++-..++..- +.-..+..+++||+||-|.+.+.+.+..++.++..+.........|++++|||+++. +..++..
T Consensus 321 ~tiEkanslin~l-ie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A 399 (1008)
T KOG0950|consen 321 ATIEKANSLINSL-IEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDA 399 (1008)
T ss_pred eehHhhHhHHHHH-HhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhh
Confidence 9999876655331 112245578999999999999999999999999988766555668899999999953 3333321
Q ss_pred hccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEec---ccchhhHHHHHHHhCCCcEEEEecc
Q psy16310 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK---HDEKDSYLYYFILQHPGRTLVFCNS 1086 (1493)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~k~~~l~~~l~~~~~~~IVF~~s 1086 (1493)
.........+ .+...... ...++... .......+...+.... +.+-...+..-....+.++||||++
T Consensus 400 ~~y~t~fRPv--------~L~E~ik~-G~~i~~~~-r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~s 469 (1008)
T KOG0950|consen 400 FVYTTRFRPV--------PLKEYIKP-GSLIYESS-RNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPS 469 (1008)
T ss_pred hheecccCcc--------cchhccCC-Ccccccch-hhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCc
Confidence 1100000000 00000000 00011110 0000001100000000 0011111122222335679999999
Q ss_pred hhhHHHHHHHHHhc--------------------------------------CCCccccccCCCHHHHHHHHHHHhcCCC
Q psy16310 1087 ISSVKRLTQLLTML--------------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNN 1128 (1493)
Q Consensus 1087 ~~~~~~l~~~L~~~--------------------------------------~~~~~~lhg~m~~~~R~~~~~~F~~g~~ 1128 (1493)
+..|+.++..+... ..+++.+|++++..+|..+...|+.|.+
T Consensus 470 k~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i 549 (1008)
T KOG0950|consen 470 KKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNI 549 (1008)
T ss_pred ccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCe
Confidence 99999888655211 2567789999999999999999999999
Q ss_pred CeEEeehhhhccccCCCccEEEEec----CCCChhHHHHHHhccCCCCC--CCeEEEEecCCCHHHHHHHHHh
Q psy16310 1129 SILLATDVAARGLDIPGIEHVIHYH----VPRTSEIYIHRSGRTARANN--EGLTLVLIESDEIPLYIKMFNS 1195 (1493)
Q Consensus 1129 ~VLVaTdv~~~GiDip~v~~VI~~d----~p~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~e~~~~~~~~~~ 1195 (1493)
.|++||++++.|++.|..+++|-+- ...+...|.||+|||||+|- .|.+++++.+.+...++.+.+.
T Consensus 550 ~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~ 622 (1008)
T KOG0950|consen 550 FVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNS 622 (1008)
T ss_pred EEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhc
Confidence 9999999999999999999998532 12467889999999999964 6999999999998887776654
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=248.02 Aligned_cols=350 Identities=17% Similarity=0.204 Sum_probs=226.5
Q ss_pred CCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 787 g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
|. .|+++|.-.-- ++..| -|+.++||.|||++|.+|++...+.+
T Consensus 80 gm-~~ydVQliGgl-~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~g-------------------------------- 123 (908)
T PRK13107 80 EM-RHFDVQLLGGM-VLDSN--RIAEMRTGEGKTLTATLPAYLNALTG-------------------------------- 123 (908)
T ss_pred CC-CcCchHHhcch-HhcCC--ccccccCCCCchHHHHHHHHHHHhcC--------------------------------
Confidence 43 67888987763 55554 48899999999999999998665432
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHhCc
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLGH 945 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~~~ 945 (1493)
..|.||+|+++||.|.++.+..+..++|+++.++.++.+.... .-...+||++|||++| .|+|+.+.
T Consensus 124 ----------~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm 191 (908)
T PRK13107 124 ----------KGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNM 191 (908)
T ss_pred ----------CCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccC
Confidence 2399999999999999999999999999999999999886433 2234689999999999 88887652
Q ss_pred -Cccc--cccceeEEEecccchhccCC----------------ChhHHHHHHHHhcccC--------------CCCCceE
Q psy16310 946 -FHLT--ELYKINYLVIDETDRMIESG----------------HFPELKNILDRVTMTE--------------TSQPRQT 992 (1493)
Q Consensus 946 -~~~~--~l~~l~~lVlDEah~ll~~~----------------~~~~l~~il~~l~~~~--------------~~~~~q~ 992 (1493)
.... -...+.++|+||||.|+-+. .+..+..++..|.... .......
T Consensus 192 ~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~ 271 (908)
T PRK13107 192 AFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQ 271 (908)
T ss_pred ccchhhhhccccceeeecchhhhccccCCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCe
Confidence 1111 12568899999999975332 1233333333332100 0011112
Q ss_pred EEEecc--------c--------------------ccchHhHHhhhc--cCcCc---------------ccccCCC----
Q psy16310 993 FVFSAT--------L--------------------THSLKNSLNLKK--GQSKS---------------KKVSKGD---- 1023 (1493)
Q Consensus 993 ll~SAT--------l--------------------~~~~~~~~~~~~--~~~~~---------------~~~~~~~---- 1023 (1493)
+.++-. + .+.+...+.... ..... ..+..+.
T Consensus 272 v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsd 351 (908)
T PRK13107 272 VHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSE 351 (908)
T ss_pred eeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccch
Confidence 222210 0 000111110000 00000 0000000
Q ss_pred --------------------------chhHHHH---------------hHhccCCCcEEeccccccccccceeeEEEecc
Q psy16310 1024 --------------------------PSIKRLQ---------------DLLNIKSPKIVDLTEKIGITKTLTESKILCKH 1062 (1493)
Q Consensus 1024 --------------------------~~~~~l~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1493)
.++..++ .+..+..-.++.+.........-....+....
T Consensus 352 GLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~ 431 (908)
T PRK13107 352 GLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTA 431 (908)
T ss_pred HHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCH
Confidence 0000000 00111111111111111111111111233334
Q ss_pred cchhhHHHHHHH---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhc
Q psy16310 1063 DEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139 (1493)
Q Consensus 1063 ~~k~~~l~~~l~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~ 1139 (1493)
..|...++..+. ..+.++||||+|+..++.++..|...|+....+|+.+.+.+|..+.+.|+.|. |+|||++++|
T Consensus 432 ~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGR 509 (908)
T PRK13107 432 DEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGR 509 (908)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCC
Confidence 556555555443 44789999999999999999999999999999999999999999999999999 9999999999
Q ss_pred cccCC-------------------------------------CccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEec
Q psy16310 1140 GLDIP-------------------------------------GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIE 1182 (1493)
Q Consensus 1140 GiDip-------------------------------------~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~ 1182 (1493)
|+||. +=-|||--..+.|..-=-|-.||+||-|.+|.+..|++
T Consensus 510 GTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lS 589 (908)
T PRK13107 510 GTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLS 589 (908)
T ss_pred CcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEE
Confidence 99995 11378888888888888999999999999999999987
Q ss_pred CCCH
Q psy16310 1183 SDEI 1186 (1493)
Q Consensus 1183 ~~e~ 1186 (1493)
-.|.
T Consensus 590 lED~ 593 (908)
T PRK13107 590 MEDS 593 (908)
T ss_pred eCcH
Confidence 6553
|
|
| >KOG0950|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=252.22 Aligned_cols=367 Identities=21% Similarity=0.225 Sum_probs=244.0
Q ss_pred CCHHH-HHHHHHCCCCCChHHHHhhhh-hhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHH
Q psy16310 158 IPETI-IRALYQKGFKTPTKIQSMVMP-SALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 235 (1493)
Q Consensus 158 l~~~l-~~~l~~~g~~~pt~iQ~~~i~-~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 235 (1493)
+++.+ .-.....|+..++.||.+++- ..+++++|+|..+||+.|||+++-+-++..++-
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~------------------- 267 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC------------------- 267 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH-------------------
Confidence 34444 344566799999999999973 134588999999999999999999988877753
Q ss_pred HHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEe
Q psy16310 236 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVA 315 (1493)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~ 315 (1493)
.+..++++.|-..-++.-...+..++...|+.|-+++|........ +.-++.||
T Consensus 268 ----------------------~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~ 321 (1008)
T KOG0950|consen 268 ----------------------RRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIA 321 (1008)
T ss_pred ----------------------HhhceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCcc----cceeeeee
Confidence 2235899999999999988889999999999999999876654432 23479999
Q ss_pred CcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhcccc
Q psy16310 316 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395 (1493)
Q Consensus 316 TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1493)
|-++-..++..- +.-..+..+.+||+||-|.+.+.+.+..++.++..+.....
T Consensus 322 tiEkanslin~l-ie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~-------------------------- 374 (1008)
T KOG0950|consen 322 TIEKANSLINSL-IEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENL-------------------------- 374 (1008)
T ss_pred ehHhhHhHHHHH-HhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhcc--------------------------
Confidence 999865544321 12223446899999999999999999999999987643311
Q ss_pred CCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCC
Q psy16310 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 475 (1493)
Q Consensus 396 ~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1493)
....|+|++|||+++.- .+.+|+...-. ...+. +..+.+.. .+..
T Consensus 375 --~~~~~iIGMSATi~N~~------------------------lL~~~L~A~~y-----~t~fR-Pv~L~E~i-k~G~-- 419 (1008)
T KOG0950|consen 375 --ETSVQIIGMSATIPNNS------------------------LLQDWLDAFVY-----TTRFR-PVPLKEYI-KPGS-- 419 (1008)
T ss_pred --ccceeEeeeecccCChH------------------------HHHHHhhhhhe-----ecccC-cccchhcc-CCCc--
Confidence 12278999999998531 22222220000 00000 00000000 0000
Q ss_pred cchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchh
Q psy16310 476 KDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 555 (1493)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~ 555 (1493)
..+-. . .....+.+...+. .... ..+.+.- -.++.-....+.++||||+++.
T Consensus 420 ----~i~~~---~---r~~~lr~ia~l~~-------------~~~g----~~dpD~~-v~L~tet~~e~~~~lvfc~sk~ 471 (1008)
T KOG0950|consen 420 ----LIYES---S---RNKVLREIANLYS-------------SNLG----DEDPDHL-VGLCTETAPEGSSVLVFCPSKK 471 (1008)
T ss_pred ----ccccc---h---hhHHHHHhhhhhh-------------hhcc----cCCCcce-eeehhhhhhcCCeEEEEcCccc
Confidence 00000 0 0000000000000 0000 0000000 1111112233457999999999
Q ss_pred hHHHHHHHHHh--------------------------------------cCCCccccccCCCHHHHHHHHHHHhcCCCeE
Q psy16310 556 SVKRLTQLLTM--------------------------------------LKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 597 (1493)
Q Consensus 556 ~a~~L~~~L~~--------------------------------------~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~V 597 (1493)
.|+.++..+.. ...+++.+|+|++..+|..+...|+.|.+.|
T Consensus 472 ~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~v 551 (1008)
T KOG0950|consen 472 NCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFV 551 (1008)
T ss_pred chHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEE
Confidence 99988765511 1356788999999999999999999999999
Q ss_pred EEEechhhccCCCCCCcEEEEec----CCCChHHHHHHHhccccCCCC--CeEEEEecCCcchhhhhh
Q psy16310 598 LLATDVAARGLDIPGIEHVIHYH----VPRTSEIYIHRSGRTARANNE--GLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 598 LVaTdv~~rGlDip~v~~VI~yd----~P~s~~~yiQR~GRagR~g~~--G~~i~l~~~~e~~~~~~l 659 (1493)
++||+.++.|+++|..+++|..- .+.+...|.||+|||||+|.. |.+++++.+.|...+..+
T Consensus 552 l~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 552 LVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred EEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHH
Confidence 99999999999999999988642 235678899999999999875 999999999987766554
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-23 Score=268.49 Aligned_cols=324 Identities=16% Similarity=0.201 Sum_probs=194.7
Q ss_pred CCCcHHHHhhHHHhh---c-cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 789 KTPTKIQSMVMPSAL---L-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l---~-~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
..++++|..||..+. . +.+.++++++||||||.+++ .++..++..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~------------------------------ 460 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKA------------------------------ 460 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhc------------------------------
Confidence 358999999997544 2 34689999999999998844 344444321
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhC
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~ 944 (1493)
....++|||||+++|+.|+.+.|..+.......+..+++....... .......|+|+|...|...+...
T Consensus 461 ---------~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~ 529 (1123)
T PRK11448 461 ---------KRFRRILFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYS 529 (1123)
T ss_pred ---------CccCeEEEEecHHHHHHHHHHHHHhcccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhcc
Confidence 2234799999999999999999988743222122222221111111 11234589999999987765322
Q ss_pred cCc--cccccceeEEEecccchhcc------C---C------ChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 945 HFH--LTELYKINYLVIDETDRMIE------S---G------HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 945 ~~~--~~~l~~l~~lVlDEah~ll~------~---~------~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
... ...+.++++||+||||+-.. . + +...+..++..+ +...++||||+.......+
T Consensus 530 ~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yF-------dA~~IGLTATP~r~t~~~F 602 (1123)
T PRK11448 530 DDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYF-------DAVKIGLTATPALHTTEIF 602 (1123)
T ss_pred ccccccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhc-------CccEEEEecCCccchhHHh
Confidence 111 12345678999999999531 0 1 134556666643 2467999999975432221
Q ss_pred hhhccCcCcccccCCCchhHHHHhHhccC---CCcEEec--c-------ccc--c----ccccceeeEE------Eec--
Q psy16310 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIK---SPKIVDL--T-------EKI--G----ITKTLTESKI------LCK-- 1061 (1493)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~--~-------~~~--~----~~~~~~~~~~------~~~-- 1061 (1493)
+.. +... .+......-.+- .|..+.. . ... . ....+..... ...
T Consensus 603 ----G~p----v~~Y--sl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~ 672 (1123)
T PRK11448 603 ----GEP----VYTY--SYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDF 672 (1123)
T ss_pred ----CCe----eEEe--eHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHH
Confidence 100 0000 011110000010 0111110 0 000 0 0000000000 000
Q ss_pred -----ccchhhH----HHHHHH-hCCCcEEEEecchhhHHHHHHHHHhc------CC---CccccccCCCHHHHHHHHHH
Q psy16310 1062 -----HDEKDSY----LYYFIL-QHPGRTLVFCNSISSVKRLTQLLTML------KC---SPLPLHASMNQRQRLKNLDR 1122 (1493)
Q Consensus 1062 -----~~~k~~~----l~~~l~-~~~~~~IVF~~s~~~~~~l~~~L~~~------~~---~~~~lhg~m~~~~R~~~~~~ 1122 (1493)
....... +...+. ..++++||||.++.+|+.++..|... +. .+..+||+++ ++..++++
T Consensus 673 ~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~ 750 (1123)
T PRK11448 673 NRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRR 750 (1123)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHH
Confidence 0000111 111111 12579999999999999999887653 22 3445888876 46789999
Q ss_pred HhcCCC-CeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCC
Q psy16310 1123 FRDQNN-SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173 (1493)
Q Consensus 1123 F~~g~~-~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~ 1173 (1493)
|+++.. .|+|+++++.+|+|+|.|.+||.++++.|...|+||+||+.|...
T Consensus 751 Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 751 FKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred HhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 999887 599999999999999999999999999999999999999999743
|
|
| >KOG0948|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-24 Score=249.13 Aligned_cols=341 Identities=18% Similarity=0.172 Sum_probs=230.8
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
++-|+|..+|- .+..+.++++.|.|.+|||.++-.+|...+-
T Consensus 129 ~LDpFQ~~aI~-Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr------------------------------------- 170 (1041)
T KOG0948|consen 129 TLDPFQSTAIK-CIDRGESVLVSAHTSAGKTVVAEYAIAMSLR------------------------------------- 170 (1041)
T ss_pred ccCchHhhhhh-hhcCCceEEEEeecCCCcchHHHHHHHHHHH-------------------------------------
Confidence 56799999995 7888999999999999999998887776552
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccc
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~ 949 (1493)
.+-+++|-.|-++|-+|-|+.+..-+ -.|++.+|+..... .+..+|+|.+.|..++.+|.-
T Consensus 171 -----~kQRVIYTSPIKALSNQKYREl~~EF----~DVGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSE--- 231 (1041)
T KOG0948|consen 171 -----EKQRVIYTSPIKALSNQKYRELLEEF----KDVGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSE--- 231 (1041)
T ss_pred -----hcCeEEeeChhhhhcchhHHHHHHHh----cccceeecceeeCC-------CCceeeeHHHHHHHHHhccch---
Confidence 23379999999999999999987754 34667777665433 356899999999999988763
Q ss_pred cccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH--hHHhhhccCcCcccccCCCchhH
Q psy16310 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK--NSLNLKKGQSKSKKVSKGDPSIK 1027 (1493)
Q Consensus 950 ~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 1027 (1493)
-++.+..+||||+|-|-+...+-.++.-+-.+ |.+...+++|||+|+... +|+.....++-........ ..
T Consensus 232 vmrEVaWVIFDEIHYMRDkERGVVWEETIIll-----P~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyR--PT 304 (1041)
T KOG0948|consen 232 VMREVAWVIFDEIHYMRDKERGVVWEETIILL-----PDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYR--PT 304 (1041)
T ss_pred HhheeeeEEeeeehhccccccceeeeeeEEec-----cccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCC--CC
Confidence 35679999999999998887665555544334 578899999999998654 3443222222211111111 11
Q ss_pred HHHhHhccC-CCc---EEeccccccc------cccce----------------eeEE--EecccchhhHHHHHH-HhCCC
Q psy16310 1028 RLQDLLNIK-SPK---IVDLTEKIGI------TKTLT----------------ESKI--LCKHDEKDSYLYYFI-LQHPG 1078 (1493)
Q Consensus 1028 ~l~~~~~~~-~~~---~~~~~~~~~~------~~~~~----------------~~~~--~~~~~~k~~~l~~~l-~~~~~ 1078 (1493)
.+++++.-. ... +++-...... ...+. .... ..+.+.....++..+ .....
T Consensus 305 PLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~ 384 (1041)
T KOG0948|consen 305 PLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYL 384 (1041)
T ss_pred cceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCC
Confidence 111111110 111 1111000000 00000 0000 001111122333333 34467
Q ss_pred cEEEEecchhhHHHHHHHHHhc---------------------------------------CCCccccccCCCHHHHHHH
Q psy16310 1079 RTLVFCNSISSVKRLTQLLTML---------------------------------------KCSPLPLHASMNQRQRLKN 1119 (1493)
Q Consensus 1079 ~~IVF~~s~~~~~~l~~~L~~~---------------------------------------~~~~~~lhg~m~~~~R~~~ 1119 (1493)
++|||+-+++.|+.+|..+..+ ..++.+||||+-+--++-+
T Consensus 385 PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~I 464 (1041)
T KOG0948|consen 385 PVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVI 464 (1041)
T ss_pred ceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHH
Confidence 9999999999999999887543 1346779999999999999
Q ss_pred HHHHhcCCCCeEEeehhhhccccCCCccEEEE----ecCC----CChhHHHHHHhccCCCCC--CCeEEEEecCC-CHHH
Q psy16310 1120 LDRFRDQNNSILLATDVAARGLDIPGIEHVIH----YHVP----RTSEIYIHRSGRTARANN--EGLTLVLIESD-EIPL 1188 (1493)
Q Consensus 1120 ~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~----~d~p----~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~-e~~~ 1188 (1493)
.-.|..|-++||+||.+++.|+|.|.-++|+- ||-- -+.-.|+|+.|||||.|. .|.+|++++.. +-..
T Consensus 465 EILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ 544 (1041)
T KOG0948|consen 465 EILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQV 544 (1041)
T ss_pred HHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHH
Confidence 99999999999999999999999999888874 3322 244579999999999986 68888888765 3344
Q ss_pred HHHHHH
Q psy16310 1189 YIKMFN 1194 (1493)
Q Consensus 1189 ~~~~~~ 1194 (1493)
.+.+++
T Consensus 545 ak~m~k 550 (1041)
T KOG0948|consen 545 AKDMLK 550 (1041)
T ss_pred HHHHhc
Confidence 455543
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=251.05 Aligned_cols=322 Identities=19% Similarity=0.197 Sum_probs=229.0
Q ss_pred cCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhc-----cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 156 FNIPETIIRALYQ-KGFKTPTKIQSMVMPSALL-----ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 156 l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~-----~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
++.+......+.+ .+| .-|+-|..||..... ...|-++||..|-|||-+++-.++-.+
T Consensus 577 f~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV--------------- 640 (1139)
T COG1197 577 FPPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV--------------- 640 (1139)
T ss_pred CCCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh---------------
Confidence 3455556655544 366 479999999974442 146899999999999999888877555
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHh---
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL--- 306 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l--- 306 (1493)
..+.+|.|||||.-||+|.++.|++...+++++|..+.--.+.+++...+
T Consensus 641 ---------------------------~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~l 693 (1139)
T COG1197 641 ---------------------------MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGL 693 (1139)
T ss_pred ---------------------------cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHH
Confidence 24578999999999999999999999999999999998877777665544
Q ss_pred -cCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchh
Q psy16310 307 -NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385 (1493)
Q Consensus 307 -~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~ 385 (1493)
.+..||||+|.-.| +..+. |.++.+|||||-|+.- -...+.+..+-
T Consensus 694 a~G~vDIvIGTHrLL-----~kdv~---FkdLGLlIIDEEqRFG-Vk~KEkLK~Lr------------------------ 740 (1139)
T COG1197 694 AEGKVDIVIGTHRLL-----SKDVK---FKDLGLLIIDEEQRFG-VKHKEKLKELR------------------------ 740 (1139)
T ss_pred hcCCccEEEechHhh-----CCCcE---EecCCeEEEechhhcC-ccHHHHHHHHh------------------------
Confidence 34589999998766 22333 5588999999999873 33333443332
Q ss_pred hhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccc
Q psy16310 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465 (1493)
Q Consensus 386 ~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1493)
...-++-+|||+=+...++. +.+++.-.++.....-+++
T Consensus 741 -------------~~VDvLTLSATPIPRTL~Ms------------------------m~GiRdlSvI~TPP~~R~p---- 779 (1139)
T COG1197 741 -------------ANVDVLTLSATPIPRTLNMS------------------------LSGIRDLSVIATPPEDRLP---- 779 (1139)
T ss_pred -------------ccCcEEEeeCCCCcchHHHH------------------------HhcchhhhhccCCCCCCcc----
Confidence 33568899999633221111 0000000000000000000
Q ss_pred hhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHH-h--h
Q psy16310 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-L--Q 542 (1493)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l-~--~ 542 (1493)
+ ..++... -..++...+ . .
T Consensus 780 ---V-----------------------------------------------------~T~V~~~--d~~~ireAI~REl~ 801 (1139)
T COG1197 780 ---V-----------------------------------------------------KTFVSEY--DDLLIREAILRELL 801 (1139)
T ss_pred ---e-----------------------------------------------------EEEEecC--ChHHHHHHHHHHHh
Confidence 0 0000000 001111111 1 2
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEec
Q psy16310 543 HPGRTLVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620 (1493)
Q Consensus 543 ~~~~~IIF~~s~~~a~~L~~~L~~~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd 620 (1493)
.+|++-.-+|..++.+.++..|+.+ ...+++.||.|+..+-.+++..|-+|+.+|||||.+.+.|||||++|.+|..+
T Consensus 802 RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~ 881 (1139)
T COG1197 802 RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIER 881 (1139)
T ss_pred cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEec
Confidence 3678888889999999999999887 56788899999999999999999999999999999999999999999999776
Q ss_pred CC-CChHHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 621 VP-RTSEIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 621 ~P-~s~~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
.- .......|-.||+||..+.++||++|.+..
T Consensus 882 AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 882 ADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred cccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 55 457889999999999999999999997654
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=265.23 Aligned_cols=94 Identities=21% Similarity=0.441 Sum_probs=82.1
Q ss_pred CCcEEEEecchhhHHHHHHHHHhc------CC---CccccccCCCHHHHHHHHHHHhcCCC-eEEEEechhhccCCCCCC
Q psy16310 544 PGRTLVFCNSISSVKRLTQLLTML------KC---SPLPLHASMNQRQRLKNLDRFRDQNN-SILLATDVAARGLDIPGI 613 (1493)
Q Consensus 544 ~~~~IIF~~s~~~a~~L~~~L~~~------~~---~~~~lhg~~~~~~R~~vl~~Fr~g~~-~VLVaTdv~~rGlDip~v 613 (1493)
++++||||.++.+|+.++..|... +. .+..+||+++ ++..+++.|+++.. .|+|+++++.+|+|+|.|
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccc
Confidence 479999999999999999887653 12 3455888875 45679999999987 699999999999999999
Q ss_pred cEEEEecCCCChHHHHHHHhccccCC
Q psy16310 614 EHVIHYHVPRTSEIYIHRSGRTARAN 639 (1493)
Q Consensus 614 ~~VI~yd~P~s~~~yiQR~GRagR~g 639 (1493)
.+||.++++.|...|+||+||+.|..
T Consensus 776 ~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 776 CNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cEEEEecCCCCHHHHHHHHhhhccCC
Confidence 99999999999999999999999964
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-23 Score=252.53 Aligned_cols=420 Identities=15% Similarity=0.175 Sum_probs=245.0
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
|. .|+++|.-.-- +|.. --|+.++||.|||++|.+|++...+
T Consensus 80 gm-~~ydVQliGgl-~L~~--G~IaEm~TGEGKTL~a~lp~~l~al---------------------------------- 121 (908)
T PRK13107 80 EM-RHFDVQLLGGM-VLDS--NRIAEMRTGEGKTLTATLPAYLNAL---------------------------------- 121 (908)
T ss_pred CC-CcCchHHhcch-HhcC--CccccccCCCCchHHHHHHHHHHHh----------------------------------
Confidence 54 68899986653 5544 4588999999999999999985553
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHcC-
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG- 327 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~~- 327 (1493)
.+..|.||+|+..||.|..+++..+..++|+++++++++.+....... -.+||+++||+.| .++|..+
T Consensus 122 --------~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~~--Y~~dI~YgT~~e~gfDyLrdnm 191 (908)
T PRK13107 122 --------TGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAA--YNADITYGTNNEFGFDYLRDNM 191 (908)
T ss_pred --------cCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHhc--CCCCeEEeCCCcccchhhhccC
Confidence 223499999999999999999999999999999999999886443222 2579999999999 8888765
Q ss_pred Cccc--cccccccEEEEecCchhhhcC-C---------------hhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 328 HFHL--TELYKINYLVIDETDRMIESG-H---------------FPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 328 ~~~~--~~l~~i~~lViDEAh~ll~~~-~---------------~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
.... .....+.++||||||.+|-+. . +..+..++..+....... ........+
T Consensus 192 ~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~-~~~~~~~~d-------- 262 (908)
T PRK13107 192 AFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKINTLIPNLIRQDKED-TEEYVGEGD-------- 262 (908)
T ss_pred ccchhhhhccccceeeecchhhhccccCCCceeecCCCccchHHHHHHHHHHHHHHhhhhcc-ccccCCCCC--------
Confidence 1111 112568899999999987432 1 112222222222100000 000000000
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccc--cccccccCCC-chhhhHHhhh------hccC------Ccccch
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQ--SKSKKVSKGD-PSIKRLQDLL------NIKS------PKIVDL 454 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~------~~~~------~~~~~~ 454 (1493)
+.. ....+.+.++-.=...+..++.. .+. .......... .....+...+ .... ..+.-+
T Consensus 263 --y~i---dek~~~v~LTe~G~~~~e~~l~~-~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IV 336 (908)
T PRK13107 263 --YSI---DEKAKQVHFTERGQEKVENLLIE-RGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIV 336 (908)
T ss_pred --EEE---ecCCCeeeechHHHHHHHHHHHh-CCcccCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEE
Confidence 000 01111222211100111111100 000 0000000000 0000011100 0000 000000
Q ss_pred ---hhhhcccccc----chhh------hhhcc---CCcchhhH----HHHhcCCCcchhhHHHhhhhccCCccccccccc
Q psy16310 455 ---TEKIGITKTL----TESK------ILCKH---DEKDSYLY----YFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI 514 (1493)
Q Consensus 455 ---~~~~~~~~~~----~~~~------~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1493)
++.......+ .+.. .+... ...-.+.. |.-...-..+.......+...+.-.+.......
T Consensus 337 De~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnk 416 (908)
T PRK13107 337 DEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNR 416 (908)
T ss_pred ECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCC
Confidence 0000000000 0000 00000 00011111 111112223333334455555555555544444
Q ss_pred cccccccccccccccCchhhHHHHHHh---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHh
Q psy16310 515 GITKTLTESKILCKHDEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR 591 (1493)
Q Consensus 515 ~~~~~~~~~~~~~~~~~k~~~l~~~l~---~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr 591 (1493)
..........++.....|...+...+. ..+.++||||+|...++.++.+|...++....+|+.+++.++..+.+.|+
T Consensus 417 p~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~ 496 (908)
T PRK13107 417 PMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGR 496 (908)
T ss_pred CccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCC
Confidence 433333334455555667766665554 34679999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEechhhccCCCCC--------------------------------C-----cEEEEecCCCChHHHHHHHhc
Q psy16310 592 DQNNSILLATDVAARGLDIPG--------------------------------I-----EHVIHYHVPRTSEIYIHRSGR 634 (1493)
Q Consensus 592 ~g~~~VLVaTdv~~rGlDip~--------------------------------v-----~~VI~yd~P~s~~~yiQR~GR 634 (1493)
.|. |+|||++|+||+||.= | =+||-...+.|..-=-|-.||
T Consensus 497 ~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGR 574 (908)
T PRK13107 497 TGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGR 574 (908)
T ss_pred CCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcc
Confidence 998 9999999999999951 1 178888899998888999999
Q ss_pred cccCCCCCeEEEEecCCcch
Q psy16310 635 TARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 635 agR~g~~G~~i~l~~~~e~~ 654 (1493)
+||-|.+|.+-.|++-+|--
T Consensus 575 aGRQGDPGss~f~lSlED~L 594 (908)
T PRK13107 575 AGRQGDAGSSRFYLSMEDSL 594 (908)
T ss_pred cccCCCCCceeEEEEeCcHH
Confidence 99999999999999877643
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=209.23 Aligned_cols=300 Identities=18% Similarity=0.235 Sum_probs=201.0
Q ss_pred CCcHHHHhhHHHh---hccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 790 TPTKIQSMVMPSA---LLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~---l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
++||.|..+-..+ +...+++++.|-||+|||.. +.+.++..+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al---------------------------------- 141 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQAL---------------------------------- 141 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHH----------------------------------
Confidence 6799999886533 34568999999999999986 334444333
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcC
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~ 946 (1493)
..|.++.+.+|....|..++..+++.. .+..+.+++|+.....+ ..++|+|...|+.+-+
T Consensus 142 -------~~G~~vciASPRvDVclEl~~Rlk~aF--~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~---- 201 (441)
T COG4098 142 -------NQGGRVCIASPRVDVCLELYPRLKQAF--SNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ---- 201 (441)
T ss_pred -------hcCCeEEEecCcccchHHHHHHHHHhh--ccCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh----
Confidence 345679999999999999999998864 45778889998765443 3789999888766543
Q ss_pred ccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchh
Q psy16310 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 1026 (1493)
Q Consensus 947 ~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1026 (1493)
.++++|+||+|-+.-. --..+..-++.. .....-++++|||.++.+...+....
T Consensus 202 ------aFD~liIDEVDAFP~~-~d~~L~~Av~~a----rk~~g~~IylTATp~k~l~r~~~~g~--------------- 255 (441)
T COG4098 202 ------AFDLLIIDEVDAFPFS-DDQSLQYAVKKA----RKKEGATIYLTATPTKKLERKILKGN--------------- 255 (441)
T ss_pred ------hccEEEEecccccccc-CCHHHHHHHHHh----hcccCceEEEecCChHHHHHHhhhCC---------------
Confidence 3689999999975321 112333333322 23556789999999987766542110
Q ss_pred HHHHhHhccCCCcEEeccccccccccceeeEEEecccch-------hhHHHHHHHh---CCCcEEEEecchhhHHHHHHH
Q psy16310 1027 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-------DSYLYYFILQ---HPGRTLVFCNSISSVKRLTQL 1096 (1493)
Q Consensus 1027 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-------~~~l~~~l~~---~~~~~IVF~~s~~~~~~l~~~ 1096 (1493)
...+.+........-....++.+....| ...+..++.. .+.+++||++++...+.++..
T Consensus 256 -----------~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~ 324 (441)
T COG4098 256 -----------LRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAA 324 (441)
T ss_pred -----------eeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHH
Confidence 0011111111111111111122222111 1244444443 367999999999999999999
Q ss_pred HHh-cCC-CccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCC--CChhHHHHHHhccCCCC
Q psy16310 1097 LTM-LKC-SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP--RTSEIYIHRSGRTARAN 1172 (1493)
Q Consensus 1097 L~~-~~~-~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p--~s~~~yiqr~GR~gR~g 1172 (1493)
|+. .+. .+..+|+. ...|.+..++||+|++.+||+|.+++||+.+|+|+++|.-.-. -+-+.++|.+||+||.-
T Consensus 325 lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~ 402 (441)
T COG4098 325 LKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSL 402 (441)
T ss_pred HHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCC
Confidence 944 333 44677876 4678899999999999999999999999999999997742222 46788999999999984
Q ss_pred C--CCeEEEEecCC
Q psy16310 1173 N--EGLTLVLIESD 1184 (1493)
Q Consensus 1173 ~--~G~~i~l~~~~ 1184 (1493)
. .|.. +|+...
T Consensus 403 ~~PtGdv-~FFH~G 415 (441)
T COG4098 403 ERPTGDV-LFFHYG 415 (441)
T ss_pred cCCCCcE-EEEecc
Confidence 3 3444 444333
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=224.15 Aligned_cols=337 Identities=19% Similarity=0.233 Sum_probs=243.6
Q ss_pred cchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeE----EEEEEc--------------CCCHHHHHHHhcC
Q psy16310 248 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVK----VACVVG--------------GMSTEKQLRILNK 308 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~----v~~~~G--------------~~~~~~~~~~l~~ 308 (1493)
...++++++.++|+||||+|+|.-|.++.+.+..+.... .+. ...-+| .......+..+..
T Consensus 26 ~~~~~RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~ 105 (442)
T PF06862_consen 26 DEDEFRDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFS 105 (442)
T ss_pred ccchhhccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcC
Confidence 456789999999999999999999999999988876541 000 000011 1112223333322
Q ss_pred C-------------------------CCEEEeCcHHHHHHHHc---CCccccccccccEEEEecCchhhhcCChhhHHHH
Q psy16310 309 C-------------------------PHILVATPGRLWEFIQL---GHFHLTELYKINYLVIDETDRMIESGHFPELKNI 360 (1493)
Q Consensus 309 ~-------------------------~~IiV~TP~~L~~~l~~---~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~i 360 (1493)
| .|||||+|-.|...+.. ...+.++|++|+++|+|.||.|+ |+.|+++..+
T Consensus 106 GN~DD~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v 184 (442)
T PF06862_consen 106 GNNDDCFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHV 184 (442)
T ss_pred CCccceEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHH
Confidence 2 47999999999998875 45677789999999999999764 9999999999
Q ss_pred HHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhH
Q psy16310 361 LDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 440 (1493)
Q Consensus 361 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (1493)
++.++..|. ..|.+++.+++.|+....+..-+|+|++|+..++++..+....-
T Consensus 185 ~~~lN~~P~---------~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~------------------ 237 (442)
T PF06862_consen 185 FEHLNLQPK---------KSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHC------------------ 237 (442)
T ss_pred HHHhccCCC---------CCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhC------------------
Confidence 999998765 35779999999999999999999999999999998877664211
Q ss_pred HhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccc
Q psy16310 441 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTL 520 (1493)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (1493)
.+..+.............+.... +.+. .....+
T Consensus 238 -----------~N~~G~v~~~~~~~~~g~i~~v~------------------------------~~v~------Q~F~r~ 270 (442)
T PF06862_consen 238 -----------QNYAGKVRLKPPYEASGVISQVV------------------------------VQVR------QVFQRF 270 (442)
T ss_pred -----------cCccceEEEeeccccceeeeccc------------------------------cCCc------eEEEEe
Confidence 11111111111111000000000 0000 001112
Q ss_pred cccccccccCchhhHHHHHHh------hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCC
Q psy16310 521 TESKILCKHDEKDSYLYYFIL------QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 594 (1493)
Q Consensus 521 ~~~~~~~~~~~k~~~l~~~l~------~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~ 594 (1493)
.........+.++.++...+. ...+++|||++|+-+..+|.++|+..++.++.+|.+.++.+-.++...|..|+
T Consensus 271 ~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~ 350 (442)
T PF06862_consen 271 DCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGR 350 (442)
T ss_pred cCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCC
Confidence 222333344555555544322 23479999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEechhh--ccCCCCCCcEEEEecCCCChHHHHHHHhccccCCC------CCeEEEEecCCcchhhhhh
Q psy16310 595 NSILLATDVAA--RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN------EGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 595 ~~VLVaTdv~~--rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~------~G~~i~l~~~~e~~~~~~l 659 (1493)
.+||+.|..++ +...|.++.+||.|++|..+..|-..++-.+.... .+.|.++++.-|...++.+
T Consensus 351 ~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 351 KPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred ceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 99999999999 99999999999999999999999877765444332 4789999988776655554
|
; GO: 0005634 nucleus |
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=208.79 Aligned_cols=165 Identities=32% Similarity=0.446 Sum_probs=138.0
Q ss_pred cHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhh
Q psy16310 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 871 (1493)
Q Consensus 792 t~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (1493)
||+|.++++.++ +++++++.||||+|||++|.+|++..+...
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~------------------------------------- 42 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEG------------------------------------- 42 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------------------------------------
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccC-------------------------------------
Confidence 799999998655 789999999999999999999999877432
Q ss_pred ccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHH-HHHHHhcCCCcEEEECcHHHHHHHHhCcCcccc
Q psy16310 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTE-KQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 950 (1493)
Q Consensus 872 ~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~-~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~ 950 (1493)
...+++|++|+++|+.|+.+.+..++...++++..++|+.... .....+..+++|+|+||++|.+.+..+.. .
T Consensus 43 ---~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~---~ 116 (169)
T PF00270_consen 43 ---KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI---N 116 (169)
T ss_dssp ---SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS---T
T ss_pred ---CCceEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccCcchhhcccccccc---c
Confidence 2237999999999999999999999888889999999999866 44455566789999999999999987443 3
Q ss_pred ccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 951 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 951 l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
+.++++|||||+|.+..+.+...+..++..+... .+.+++++|||++..+
T Consensus 117 ~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~---~~~~~i~~SAT~~~~~ 166 (169)
T PF00270_consen 117 ISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRF---KNIQIILLSATLPSNV 166 (169)
T ss_dssp GTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTT---TTSEEEEEESSSTHHH
T ss_pred cccceeeccCcccccccccHHHHHHHHHHHhcCC---CCCcEEEEeeCCChhH
Confidence 4569999999999999988888888888876432 3588999999998544
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-21 Score=208.50 Aligned_cols=166 Identities=31% Similarity=0.446 Sum_probs=137.6
Q ss_pred hHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhh
Q psy16310 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 254 (1493)
Q Consensus 175 t~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1493)
||+|.++++.++ ++++++++||||+|||++|++|+++.+.+.
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~------------------------------------- 42 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEG------------------------------------- 42 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------------------------------------
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccC-------------------------------------
Confidence 799999998555 889999999999999999999999888541
Q ss_pred cccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHH-HHHHHhcCCCCEEEeCcHHHHHHHHcCCccccc
Q psy16310 255 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTE-KQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 333 (1493)
Q Consensus 255 ~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~-~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~ 333 (1493)
...++++++|+++|+.|+.+.+..++...++++..++|+.... .....+..+++|+|+||+.|.+++..... .
T Consensus 43 ---~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~---~ 116 (169)
T PF00270_consen 43 ---KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI---N 116 (169)
T ss_dssp ---SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS---T
T ss_pred ---CCceEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccCcchhhcccccccc---c
Confidence 2237999999999999999999999988889999999998865 44445556789999999999999987444 2
Q ss_pred cccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchh
Q psy16310 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 413 (1493)
Q Consensus 334 l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~ 413 (1493)
+.++++|||||+|++..+.+...+..++..+... .+.|++++|||++..
T Consensus 117 ~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~-------------------------------~~~~~i~~SAT~~~~ 165 (169)
T PF00270_consen 117 ISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRF-------------------------------KNIQIILLSATLPSN 165 (169)
T ss_dssp GTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTT-------------------------------TTSEEEEEESSSTHH
T ss_pred cccceeeccCcccccccccHHHHHHHHHHHhcCC-------------------------------CCCcEEEEeeCCChh
Confidence 4469999999999999888888888888776422 246899999999855
Q ss_pred hh
Q psy16310 414 LK 415 (1493)
Q Consensus 414 ~~ 415 (1493)
+.
T Consensus 166 ~~ 167 (169)
T PF00270_consen 166 VE 167 (169)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >KOG0922|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-21 Score=225.92 Aligned_cols=308 Identities=19% Similarity=0.228 Sum_probs=200.5
Q ss_pred hhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCc
Q psy16310 180 MVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 259 (1493)
Q Consensus 180 ~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (1493)
+.+. ++..++-+|+.|+||||||.. +-+.++... ....
T Consensus 58 ~il~-~ve~nqvlIviGeTGsGKSTQ----ipQyL~eaG-------------------------------------~~~~ 95 (674)
T KOG0922|consen 58 QILY-AVEDNQVLIVIGETGSGKSTQ----IPQYLAEAG-------------------------------------FASS 95 (674)
T ss_pred HHHH-HHHHCCEEEEEcCCCCCcccc----HhHHHHhcc-------------------------------------cccC
Confidence 4443 667788999999999999997 345554311 1122
Q ss_pred eEEEEEcccHHHHHHHHH-HHHHhcCCCCeEE--EEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcccccccc
Q psy16310 260 LYALILAPTRELAIQVQN-HILDAGKYTPVKV--ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 336 (1493)
Q Consensus 260 ~~aLiL~PTreLa~Qi~~-~~~~l~~~~~i~v--~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~ 336 (1493)
.++.+.-|.|--|.-++. +..+++...|-.| .+.+.+..... ..|.++|.|.|++.+..+.. |++
T Consensus 96 g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~ts~~--------TrikymTDG~LLRE~l~Dp~----Lsk 163 (674)
T KOG0922|consen 96 GKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDSTSKD--------TRIKYMTDGMLLREILKDPL----LSK 163 (674)
T ss_pred CcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecccCCCc--------eeEEEecchHHHHHHhcCCc----ccc
Confidence 347788888887777654 4555655555333 33344433322 37999999999998876543 778
Q ss_pred ccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhh
Q psy16310 337 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 416 (1493)
Q Consensus 337 i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~ 416 (1493)
+++||+||||.-. -..+.+-.+++.+-.. .+..++|++|||+..+...
T Consensus 164 YsvIIlDEAHERs--l~TDiLlGlLKki~~~------------------------------R~~LklIimSATlda~kfS 211 (674)
T KOG0922|consen 164 YSVIILDEAHERS--LHTDILLGLLKKILKK------------------------------RPDLKLIIMSATLDAEKFS 211 (674)
T ss_pred ccEEEEechhhhh--hHHHHHHHHHHHHHhc------------------------------CCCceEEEEeeeecHHHHH
Confidence 9999999999641 1334455555554322 3446899999999643221
Q ss_pred hhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHH
Q psy16310 417 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEI 496 (1493)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (1493)
+++.. ..++.+.+..... .++.. .......+.+.+
T Consensus 212 -------------------------~yF~~--a~i~~i~GR~fPV------ei~y~------------~~p~~dYv~a~~ 246 (674)
T KOG0922|consen 212 -------------------------EYFNN--APILTIPGRTFPV------EILYL------------KEPTADYVDAAL 246 (674)
T ss_pred -------------------------HHhcC--CceEeecCCCCce------eEEec------------cCCchhhHHHHH
Confidence 11110 0111111100000 00000 000000000000
Q ss_pred HhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhc----CC---
Q psy16310 497 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML----KC--- 569 (1493)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~----~~--- 569 (1493)
.. ++.-.+.+.+|.+|||...+++.+.+++.|... +-
T Consensus 247 ~t------------------------------------v~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~ 290 (674)
T KOG0922|consen 247 IT------------------------------------VIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCP 290 (674)
T ss_pred HH------------------------------------HHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCc
Confidence 00 011112345689999999999999999988655 11
Q ss_pred -CccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE--------ecC----------CCChHHHHH
Q psy16310 570 -SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH--------YHV----------PRTSEIYIH 630 (1493)
Q Consensus 570 -~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~--------yd~----------P~s~~~yiQ 630 (1493)
-+.++||.|+..+|.+++..-..|..+|+++|++++..|.||++.+||. |++ |-|-.+-.|
T Consensus 291 ~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~Q 370 (674)
T KOG0922|consen 291 ELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQ 370 (674)
T ss_pred ceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhh
Confidence 2467999999999999999999999999999999999999999999995 443 567788899
Q ss_pred HHhccccCCCCCeEEEEecCCcchh
Q psy16310 631 RSGRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 631 R~GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
|.|||||.| +|.|+.+|+.++...
T Consensus 371 RaGRAGRt~-pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 371 RAGRAGRTG-PGKCYRLYTESAYDK 394 (674)
T ss_pred hcccCCCCC-CceEEEeeeHHHHhh
Confidence 999999988 999999999877633
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=235.13 Aligned_cols=114 Identities=25% Similarity=0.448 Sum_probs=99.8
Q ss_pred HhhCCCcEEEEecchhhHHHHHHHHHh--c--CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcE
Q psy16310 540 ILQHPGRTLVFCNSISSVKRLTQLLTM--L--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 615 (1493)
Q Consensus 540 l~~~~~~~IIF~~s~~~a~~L~~~L~~--~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~ 615 (1493)
+....|.+|||.+...+.+++++.|.. + ...++++||.|+..+|.++++.-..|+.+|++||++|+.+|.||+|.+
T Consensus 255 ~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~ 334 (845)
T COG1643 255 LREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRY 334 (845)
T ss_pred ccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEE
Confidence 344578999999999999999999987 3 477899999999999999999888898889999999999999999999
Q ss_pred EEE--------ecC----------CCChHHHHHHHhccccCCCCCeEEEEecCCcch
Q psy16310 616 VIH--------YHV----------PRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 616 VI~--------yd~----------P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~ 654 (1493)
||. |++ |-|-.+..||.|||||.+ +|.||.+|+.++..
T Consensus 335 VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~ 390 (845)
T COG1643 335 VIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL 390 (845)
T ss_pred EecCCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH
Confidence 995 433 456678899999999987 99999999885544
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=193.35 Aligned_cols=310 Identities=17% Similarity=0.225 Sum_probs=199.7
Q ss_pred CChHHHHhhhhh---hhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 173 TPTKIQSMVMPS---ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 173 ~pt~iQ~~~i~~---~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
++++.|..+-.. .+...+++|++|-||+|||-.- .+.++..+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al---------------------------------- 141 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQAL---------------------------------- 141 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHH----------------------------------
Confidence 588999876543 3345789999999999999862 22333222
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCc
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~ 329 (1493)
..|.++.+.+|....|..++..++... .+..+.+++|+.....+ ..++|||...|+..-+
T Consensus 142 -------~~G~~vciASPRvDVclEl~~Rlk~aF--~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~---- 201 (441)
T COG4098 142 -------NQGGRVCIASPRVDVCLELYPRLKQAF--SNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ---- 201 (441)
T ss_pred -------hcCCeEEEecCcccchHHHHHHHHHhh--ccCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh----
Confidence 356789999999999999999998764 35788899998765443 3899999988876543
Q ss_pred cccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeec
Q psy16310 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409 (1493)
Q Consensus 330 ~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SAT 409 (1493)
.++++||||+|..- -.....+..-.+.-. ....-+|.+|||
T Consensus 202 ------aFD~liIDEVDAFP-~~~d~~L~~Av~~ar--------------------------------k~~g~~IylTAT 242 (441)
T COG4098 202 ------AFDLLIIDEVDAFP-FSDDQSLQYAVKKAR--------------------------------KKEGATIYLTAT 242 (441)
T ss_pred ------hccEEEEecccccc-ccCCHHHHHHHHHhh--------------------------------cccCceEEEecC
Confidence 46899999999652 222223333332221 233468999999
Q ss_pred cchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCC
Q psy16310 410 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 489 (1493)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (1493)
.|..+..-+.... .....+...+...+......+++... ...+
T Consensus 243 p~k~l~r~~~~g~--------------------------~~~~klp~RfH~~pLpvPkf~w~~~~------~k~l----- 285 (441)
T COG4098 243 PTKKLERKILKGN--------------------------LRILKLPARFHGKPLPVPKFVWIGNW------NKKL----- 285 (441)
T ss_pred ChHHHHHHhhhCC--------------------------eeEeecchhhcCCCCCCCceEEeccH------HHHh-----
Confidence 9976654332100 00111111111000000000000000 0000
Q ss_pred cchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC---CCcEEEEecchhhHHHHHHHHHh
Q psy16310 490 RTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH---PGRTLVFCNSISSVKRLTQLLTM 566 (1493)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~IIF~~s~~~a~~L~~~L~~ 566 (1493)
....-...|..++..+ +.+++||+++....+.++..|+.
T Consensus 286 --------------------------------------~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~ 327 (441)
T COG4098 286 --------------------------------------QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKK 327 (441)
T ss_pred --------------------------------------hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHh
Confidence 0000011344444433 57999999999999999999943
Q ss_pred -c-CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecC--CCChHHHHHHHhccccCCC--
Q psy16310 567 -L-KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV--PRTSEIYIHRSGRTARANN-- 640 (1493)
Q Consensus 567 -~-~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~--P~s~~~yiQR~GRagR~g~-- 640 (1493)
. ...++..|+. ...|.+.++.||+|++.+||+|.+++||+.+|+|+++|.-.- -.+-...+|.+||+||.-.
T Consensus 328 ~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~P 405 (441)
T COG4098 328 KLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERP 405 (441)
T ss_pred hCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCC
Confidence 3 3344667775 467888999999999999999999999999999998775322 2567889999999999543
Q ss_pred CCeEEEEecCCcc
Q psy16310 641 EGLTVVLIESDEI 653 (1493)
Q Consensus 641 ~G~~i~l~~~~e~ 653 (1493)
.|..+.|-.....
T Consensus 406 tGdv~FFH~G~sk 418 (441)
T COG4098 406 TGDVLFFHYGKSK 418 (441)
T ss_pred CCcEEEEeccchH
Confidence 3777666554433
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-20 Score=237.82 Aligned_cols=329 Identities=20% Similarity=0.203 Sum_probs=209.1
Q ss_pred CcHHHHhhHHHhhc--cCC-cEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcch
Q psy16310 791 PTKIQSMVMPSALL--ARK-DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 867 (1493)
Q Consensus 791 pt~iQ~~~i~~~l~--~~~-dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1493)
+.+.|..++..++. ... .+++.||||+|||.+++++++..+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~--------------------------------- 242 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--------------------------------- 242 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc---------------------------------
Confidence 37889998875543 234 789999999999999999988765331
Q ss_pred hhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH-----h---------cCCCcEEEEC
Q psy16310 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI-----L---------NKCPHILVAT 933 (1493)
Q Consensus 868 ~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~-----l---------~~~~~IlV~T 933 (1493)
.....+++++.|++.++.++++.++..+....+......|.......... . .....++++|
T Consensus 243 -----~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~ 317 (733)
T COG1203 243 -----IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVT 317 (733)
T ss_pred -----ccccceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccC
Confidence 12456899999999999999999998765544333322332221111000 0 0012456666
Q ss_pred cHHHHHHHHhCcCccc-cccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhcc
Q psy16310 934 PGRLWEFIQLGHFHLT-ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012 (1493)
Q Consensus 934 P~rl~~~l~~~~~~~~-~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~ 1012 (1493)
|-........+..... ..-..+++||||+|.+.+......+..++..+. ..+..++++|||+|..+...+.....
T Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~----~~g~~ill~SATlP~~~~~~l~~~~~ 393 (733)
T COG1203 318 PIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALA----EAGVPVLLMSATLPPFLKEKLKKALG 393 (733)
T ss_pred HhHhhhhhccccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHH----hCCCCEEEEecCCCHHHHHHHHHHHh
Confidence 6555442211111110 001246899999998776644455555555553 34678999999999888776643322
Q ss_pred CcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccc---hhhHHHHHHHhCCCcEEEEecchhh
Q psy16310 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE---KDSYLYYFILQHPGRTLVFCNSISS 1089 (1493)
Q Consensus 1013 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---k~~~l~~~l~~~~~~~IVF~~s~~~ 1089 (1493)
.......... ......... +......+.... ............+++++|.|||+..
T Consensus 394 ~~~~~~~~~~-----------------~~~~~~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~ 452 (733)
T COG1203 394 KGREVVENAK-----------------FCPKEDEPG----LKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDR 452 (733)
T ss_pred cccceecccc-----------------ccccccccc----cccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHH
Confidence 1111110000 000000000 000000000000 0011111112346899999999999
Q ss_pred HHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHh----cCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHH
Q psy16310 1090 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFR----DQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165 (1493)
Q Consensus 1090 ~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~----~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~ 1165 (1493)
|..++..|+..+..+..+||.++..+|.+.++.++ .+...|+|||+|++.|+|+ +++++|- =+..+.+.+||+
T Consensus 453 Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mIT--e~aPidSLIQR~ 529 (733)
T COG1203 453 AIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLIT--ELAPIDSLIQRA 529 (733)
T ss_pred HHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeeee--cCCCHHHHHHHH
Confidence 99999999998888999999999999988887644 5788999999999999999 6999884 345688999999
Q ss_pred hccCCCC--CCCeEEEEecCCC
Q psy16310 1166 GRTARAN--NEGLTLVLIESDE 1185 (1493)
Q Consensus 1166 GR~gR~g--~~G~~i~l~~~~e 1185 (1493)
||++|.| ..|..+++.....
T Consensus 530 GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 530 GRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred HHHhhcccccCCceeEeecccC
Confidence 9999999 5677777765443
|
|
| >KOG0923|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-20 Score=213.79 Aligned_cols=311 Identities=20% Similarity=0.225 Sum_probs=197.7
Q ss_pred ChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhh
Q psy16310 174 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 253 (1493)
Q Consensus 174 pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1493)
-+++-.+.+. ++..++-+||.|.||||||.. +-+.|+..
T Consensus 266 Vy~ykdell~-av~e~QVLiI~GeTGSGKTTQ----iPQyL~Ea------------------------------------ 304 (902)
T KOG0923|consen 266 VYPYKDELLK-AVKEHQVLIIVGETGSGKTTQ----IPQYLYEA------------------------------------ 304 (902)
T ss_pred chhhHHHHHH-HHHhCcEEEEEcCCCCCcccc----ccHHHHhc------------------------------------
Confidence 3455556664 777888999999999999997 33555431
Q ss_pred hcccCceEEEEEcccHHHHHHHHH-HHHHhcCCCCeEE--EEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcc
Q psy16310 254 KKTRNKLYALILAPTRELAIQVQN-HILDAGKYTPVKV--ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330 (1493)
Q Consensus 254 ~~~~~~~~aLiL~PTreLa~Qi~~-~~~~l~~~~~i~v--~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~ 330 (1493)
.-...+.++-+.-|.|--|.-+.. +..+++-.+|-.| .+.+.+..... .-|-++|.|+|+..+...+
T Consensus 305 Gytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcTSek--------TvlKYMTDGmLlREfL~ep-- 374 (902)
T KOG0923|consen 305 GYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCTSEK--------TVLKYMTDGMLLREFLSEP-- 374 (902)
T ss_pred ccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEeccccCcc--------eeeeeecchhHHHHHhccc--
Confidence 112334557788899998888754 5556654444222 22333332222 3688999999998776443
Q ss_pred ccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeecc
Q psy16310 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410 (1493)
Q Consensus 331 ~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl 410 (1493)
.|.+++++||||||.- .-..+.+-.++..+... .+...+++.|||+
T Consensus 375 --dLasYSViiiDEAHER--TL~TDILfgLvKDIar~------------------------------RpdLKllIsSAT~ 420 (902)
T KOG0923|consen 375 --DLASYSVIIVDEAHER--TLHTDILFGLVKDIARF------------------------------RPDLKLLISSATM 420 (902)
T ss_pred --cccceeEEEeehhhhh--hhhhhHHHHHHHHHHhh------------------------------CCcceEEeecccc
Confidence 3678999999999964 12334444454444221 3557899999999
Q ss_pred chhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCc
Q psy16310 411 THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 490 (1493)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (1493)
...-... ++. ...+..+.+ .+.....++-......
T Consensus 421 DAekFS~-------------------------fFD--dapIF~iPG------------------RRyPVdi~Yt~~PEAd 455 (902)
T KOG0923|consen 421 DAEKFSA-------------------------FFD--DAPIFRIPG------------------RRYPVDIFYTKAPEAD 455 (902)
T ss_pred CHHHHHH-------------------------hcc--CCcEEeccC------------------cccceeeecccCCchh
Confidence 6432111 100 000000000 0000000000000001
Q ss_pred chhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhc---
Q psy16310 491 TLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTML--- 567 (1493)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~--- 567 (1493)
.+...+..+..+. +.+..|.+|||....++.+...+.|...
T Consensus 456 YldAai~tVlqIH------------------------------------~tqp~GDILVFltGQeEIEt~~e~l~~~~~~ 499 (902)
T KOG0923|consen 456 YLDAAIVTVLQIH------------------------------------LTQPLGDILVFLTGQEEIETVKENLKERCRR 499 (902)
T ss_pred HHHHHHhhheeeE------------------------------------eccCCccEEEEeccHHHHHHHHHHHHHHHHH
Confidence 1111111111111 1223478999999999988777766433
Q ss_pred ------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE--------ecC----------CC
Q psy16310 568 ------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH--------YHV----------PR 623 (1493)
Q Consensus 568 ------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~--------yd~----------P~ 623 (1493)
.+-++++|+.+++..|.++++.-..|..+|++||++|+..|.|++|.+||. |++ |-
T Consensus 500 LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~pi 579 (902)
T KOG0923|consen 500 LGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPI 579 (902)
T ss_pred hccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeee
Confidence 345688999999999999999999999999999999999999999999995 332 44
Q ss_pred ChHHHHHHHhccccCCCCCeEEEEecCC
Q psy16310 624 TSEIYIHRSGRTARANNEGLTVVLIESD 651 (1493)
Q Consensus 624 s~~~yiQR~GRagR~g~~G~~i~l~~~~ 651 (1493)
|-.+-.||+|||||.| +|.|+.||+.-
T Consensus 580 SKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 580 SKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred chhhhhhhccccCCCC-CCceEEeechh
Confidence 5667789999999999 99999999863
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-20 Score=228.17 Aligned_cols=163 Identities=19% Similarity=0.251 Sum_probs=133.1
Q ss_pred chhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhc
Q psy16310 491 TLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTML 567 (1493)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~ 567 (1493)
+.......+...+.-.+..+.....+........++.....|...+...+.. .+.++||||+|+..++.|+.+|...
T Consensus 542 TA~te~~Ef~~iY~L~Vv~IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~ 621 (1025)
T PRK12900 542 TAETEASEFFEIYKLDVVVIPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAK 621 (1025)
T ss_pred CChhHHHHHHHHhCCcEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHc
Confidence 3344445566666665555555444444444445566666788888887743 3679999999999999999999999
Q ss_pred CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCC---CCcE-----EEEecCCCChHHHHHHHhccccCC
Q psy16310 568 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP---GIEH-----VIHYHVPRTSEIYIHRSGRTARAN 639 (1493)
Q Consensus 568 ~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip---~v~~-----VI~yd~P~s~~~yiQR~GRagR~g 639 (1493)
++....+|+ .+.+|...+..|+.+...|+|||++|+||+||+ +|.. ||+++.|.|...|.||+|||||.|
T Consensus 622 gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqG 699 (1025)
T PRK12900 622 RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQG 699 (1025)
T ss_pred CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCC
Confidence 999999997 688999999999999999999999999999999 6654 499999999999999999999999
Q ss_pred CCCeEEEEecCCcchh
Q psy16310 640 NEGLTVVLIESDEIPL 655 (1493)
Q Consensus 640 ~~G~~i~l~~~~e~~~ 655 (1493)
.+|.+++|++.+|.-+
T Consensus 700 dpGsS~ffvSleD~Lm 715 (1025)
T PRK12900 700 DPGESVFYVSLEDELM 715 (1025)
T ss_pred CCcceEEEechhHHHH
Confidence 9999999998877544
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-18 Score=226.24 Aligned_cols=126 Identities=21% Similarity=0.232 Sum_probs=88.8
Q ss_pred HHHHhCCCcEEEEecchhhHHHHHHHHHhcC--CCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCcc-
Q psy16310 1071 YFILQHPGRTLVFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIE- 1147 (1493)
Q Consensus 1071 ~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~--~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~- 1147 (1493)
.++...++++||||+|....+.++..|.... .....+..+.. ..|..++++|+.++..||+||+.+++|||+|+..
T Consensus 668 ~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l 746 (850)
T TIGR01407 668 EITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGL 746 (850)
T ss_pred HHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCce
Confidence 3344567899999999999999999997521 12223333333 5789999999999999999999999999999876
Q ss_pred -EEEEecCCC----C--------------------------hhHHHHHHhccCCCCCCCeEEEEecCC--CHHHHHHHHH
Q psy16310 1148 -HVIHYHVPR----T--------------------------SEIYIHRSGRTARANNEGLTLVLIESD--EIPLYIKMFN 1194 (1493)
Q Consensus 1148 -~VI~~d~p~----s--------------------------~~~yiqr~GR~gR~g~~G~~i~l~~~~--e~~~~~~~~~ 1194 (1493)
+||...+|- + ...+.|.+||.-|....--+++++++. ...+-+.+.+
T Consensus 747 ~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~ 826 (850)
T TIGR01407 747 VCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEK 826 (850)
T ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHH
Confidence 466666552 1 123578899999987654455555554 2234455555
Q ss_pred hcc
Q psy16310 1195 SLE 1197 (1493)
Q Consensus 1195 ~~~ 1197 (1493)
.+.
T Consensus 827 sLp 829 (850)
T TIGR01407 827 SLP 829 (850)
T ss_pred hCC
Confidence 553
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=218.72 Aligned_cols=129 Identities=22% Similarity=0.262 Sum_probs=114.0
Q ss_pred cchhhHHHHHHHh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhc
Q psy16310 1063 DEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139 (1493)
Q Consensus 1063 ~~k~~~l~~~l~~---~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~ 1139 (1493)
..+...++..+.. .+.++||||+|+..++.|+..|...|+.+..+||+|++.+|..++..|+.|++.|||||+++++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 3445555555543 3678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccEEEEec-----CCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHH
Q psy16310 1140 GLDIPGIEHVIHYH-----VPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192 (1493)
Q Consensus 1140 GiDip~v~~VI~~d-----~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~ 1192 (1493)
|+|+|++++||++| .|.+..+|+||+|||||. ..|.++++++..+......+
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHH
Confidence 99999999999988 799999999999999998 68999999987765444433
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=214.73 Aligned_cols=127 Identities=20% Similarity=0.273 Sum_probs=112.5
Q ss_pred EEecccchhhHHHHHHHh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEee
Q psy16310 1058 ILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134 (1493)
Q Consensus 1058 ~~~~~~~k~~~l~~~l~~---~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaT 1134 (1493)
+.....+|...++..+.. .+.++||||+|+..++.|+..|...|++...+|+ .+.+|+..+..|+.+...|+|||
T Consensus 576 vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIAT 653 (1025)
T PRK12900 576 VYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIAT 653 (1025)
T ss_pred EecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEec
Confidence 334445677777777743 4779999999999999999999999999999997 68899999999999999999999
Q ss_pred hhhhccccCC---Ccc-----EEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1135 DVAARGLDIP---GIE-----HVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1135 dv~~~GiDip---~v~-----~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
++++||+||+ +|. +||++..|.+...|.||+|||||.|.+|.+++|++..|.
T Consensus 654 NMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 654 NMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred cCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 9999999999 554 459999999999999999999999999999999987664
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.2e-18 Score=218.17 Aligned_cols=124 Identities=15% Similarity=0.219 Sum_probs=105.8
Q ss_pred ccCchhhHHHHHHh---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC---CCeEEEEe
Q psy16310 528 KHDEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ---NNSILLAT 601 (1493)
Q Consensus 528 ~~~~k~~~l~~~l~---~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g---~~~VLVaT 601 (1493)
..+.|..+|..+|. ..+.++|||+........|..+|...++.+..+||+++..+|..+++.|... ..-+|++|
T Consensus 468 e~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLST 547 (1033)
T PLN03142 468 ENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLST 547 (1033)
T ss_pred hhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEec
Confidence 34567666666554 3467999999999999999999999999999999999999999999999753 34679999
Q ss_pred chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeE--EEEecCC
Q psy16310 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT--VVLIESD 651 (1493)
Q Consensus 602 dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~--i~l~~~~ 651 (1493)
.+++.|||+..+++||+||+|+|+..+.|++||+-|.|....+ |.|++.+
T Consensus 548 rAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 548 RAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred cccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999999999977543 4445443
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-17 Score=205.42 Aligned_cols=320 Identities=20% Similarity=0.244 Sum_probs=201.6
Q ss_pred CCCcHHHHhhHHHhhcc---CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 789 KTPTKIQSMVMPSALLA---RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~---~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
..+++-|..++..+... -...++.+.||||||.+|+-.|-..+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L---------------------------------- 242 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVL---------------------------------- 242 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHH----------------------------------
Confidence 35678899999755443 36789999999999999987666555
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHH----HHhcCCCcEEEECcHHHHHHH
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL----RILNKCPHILVATPGRLWEFI 941 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~----~~l~~~~~IlV~TP~rl~~~l 941 (1493)
..|.++|||+|-.+|-.|+.+.|+..+ +.++..++++.+..+.. +.......|+|||-..+
T Consensus 243 --------~~GkqvLvLVPEI~Ltpq~~~rf~~rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl---- 307 (730)
T COG1198 243 --------AQGKQVLVLVPEIALTPQLLARFKARF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL---- 307 (730)
T ss_pred --------HcCCEEEEEeccccchHHHHHHHHHHh---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh----
Confidence 234579999999999999999998865 48888899888765433 33345789999996554
Q ss_pred HhCcCccccccceeEEEecccchhccC---C---ChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcC
Q psy16310 942 QLGHFHLTELYKINYLVIDETDRMIES---G---HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015 (1493)
Q Consensus 942 ~~~~~~~~~l~~l~~lVlDEah~ll~~---~---~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~ 1015 (1493)
+..|.++++||+||-|--.-. + +..++....... .+.++++-|||++-+-.... ..+...
T Consensus 308 ------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~------~~~pvvLgSATPSLES~~~~--~~g~y~ 373 (730)
T COG1198 308 ------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK------ENAPVVLGSATPSLESYANA--ESGKYK 373 (730)
T ss_pred ------cCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHH------hCCCEEEecCCCCHHHHHhh--hcCceE
Confidence 245778999999999964211 1 234444444443 57899999999973221111 111000
Q ss_pred cccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHH---HhCCCcEEEEecchhhH--
Q psy16310 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI---LQHPGRTLVFCNSISSV-- 1090 (1493)
Q Consensus 1016 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l---~~~~~~~IVF~~s~~~~-- 1090 (1493)
......... ......-.+++.......... .-...++..+ ...+.++|+|+|++.-+
T Consensus 374 ~~~L~~R~~-------~a~~p~v~iiDmr~e~~~~~~-----------~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~ 435 (730)
T COG1198 374 LLRLTNRAG-------RARLPRVEIIDMRKEPLETGR-----------SLSPALLEAIRKTLERGEQVLLFLNRRGYAPL 435 (730)
T ss_pred EEEcccccc-------ccCCCcceEEeccccccccCc-----------cCCHHHHHHHHHHHhcCCeEEEEEccCCccce
Confidence 000000000 000011111111111100000 0112233333 23356677777665433
Q ss_pred ----------------------------------------------------------HHHHHHHHhc--CCCccccccC
Q psy16310 1091 ----------------------------------------------------------KRLTQLLTML--KCSPLPLHAS 1110 (1493)
Q Consensus 1091 ----------------------------------------------------------~~l~~~L~~~--~~~~~~lhg~ 1110 (1493)
+++.+.|... +.++..+-++
T Consensus 436 l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~D 515 (730)
T COG1198 436 LLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSD 515 (730)
T ss_pred eecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccc
Confidence 3444444443 4455566666
Q ss_pred CCHHH--HHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCC------------CChhHHHHHHhccCCCCCCCe
Q psy16310 1111 MNQRQ--RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP------------RTSEIYIHRSGRTARANNEGL 1176 (1493)
Q Consensus 1111 m~~~~--R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p------------~s~~~yiqr~GR~gR~g~~G~ 1176 (1493)
.+... -...+..|.+|+.+|||.|.+++.|.|+|+++.|...|.- +....+.|-+||+||++.+|.
T Consensus 516 tt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~ 595 (730)
T COG1198 516 TTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGE 595 (730)
T ss_pred cccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCe
Confidence 55433 3678999999999999999999999999999997765432 123457888999999999999
Q ss_pred EEEEecCCCHHHH
Q psy16310 1177 TLVLIESDEIPLY 1189 (1493)
Q Consensus 1177 ~i~l~~~~e~~~~ 1189 (1493)
+++-....+.+.+
T Consensus 596 VvIQT~~P~hp~i 608 (730)
T COG1198 596 VVIQTYNPDHPAI 608 (730)
T ss_pred EEEEeCCCCcHHH
Confidence 9887655444333
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.5e-18 Score=215.75 Aligned_cols=340 Identities=16% Similarity=0.147 Sum_probs=209.4
Q ss_pred CCcHHHHhhHHHhh---ccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 790 TPTKIQSMVMPSAL---LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l---~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
.+.|+|..++..++ ..|.+.|++-..|.|||+..+. ++..+...
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~-------------------------------- 215 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEY-------------------------------- 215 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHh--------------------------------
Confidence 67899999997554 3567889999999999987543 33333211
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH---HhcCCCcEEEECcHHHHHHHHh
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---ILNKCPHILVATPGRLWEFIQL 943 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~---~l~~~~~IlV~TP~rl~~~l~~ 943 (1493)
......+|||||. .|..||.+.+.+++ ..+++..++|......... .....++|+|+|.+.+......
T Consensus 216 ------~~~~gp~LIVvP~-SlL~nW~~Ei~kw~--p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~ 286 (1033)
T PLN03142 216 ------RGITGPHMVVAPK-STLGNWMNEIRRFC--PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA 286 (1033)
T ss_pred ------cCCCCCEEEEeCh-HHHHHHHHHHHHHC--CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH
Confidence 0112348999997 66688999998875 2466677777543322211 1124579999999987654321
Q ss_pred CcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccc----
Q psy16310 944 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKV---- 1019 (1493)
Q Consensus 944 ~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~---- 1019 (1493)
+. -...++||+||||++-.. ...+...+..+. ....+++|+|+-..-...++...........
T Consensus 287 ----L~-k~~W~~VIvDEAHrIKN~--~Sklskalr~L~------a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~ 353 (1033)
T PLN03142 287 ----LK-RFSWRYIIIDEAHRIKNE--NSLLSKTMRLFS------TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAE 353 (1033)
T ss_pred ----hc-cCCCCEEEEcCccccCCH--HHHHHHHHHHhh------cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHH
Confidence 11 114689999999997542 223445555552 2346899999864322211111110000000
Q ss_pred --------cC--C-CchhHHHHh------------Hh--ccCCCc--EEeccccc--------------------c----
Q psy16310 1020 --------SK--G-DPSIKRLQD------------LL--NIKSPK--IVDLTEKI--------------------G---- 1048 (1493)
Q Consensus 1020 --------~~--~-~~~~~~l~~------------~~--~~~~~~--~~~~~~~~--------------------~---- 1048 (1493)
.. . ...+..+.. .+ .+.... .+.+.... .
T Consensus 354 ~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~ 433 (1033)
T PLN03142 354 TFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKR 433 (1033)
T ss_pred HHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 00 0 000000000 00 000000 00000000 0
Q ss_pred ---ccccce----ee---------------EEEecccchhhHHHHHH---HhCCCcEEEEecchhhHHHHHHHHHhcCCC
Q psy16310 1049 ---ITKTLT----ES---------------KILCKHDEKDSYLYYFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCS 1103 (1493)
Q Consensus 1049 ---~~~~~~----~~---------------~~~~~~~~k~~~l~~~l---~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~ 1103 (1493)
....+. +. ........|...+..++ ...+.++|||+......+.|...|...|+.
T Consensus 434 LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~ 513 (1033)
T PLN03142 434 LLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQ 513 (1033)
T ss_pred HHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCc
Confidence 000000 00 00011223333333333 334679999999999999999999999999
Q ss_pred ccccccCCCHHHHHHHHHHHhcC---CCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEE-
Q psy16310 1104 PLPLHASMNQRQRLKNLDRFRDQ---NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV- 1179 (1493)
Q Consensus 1104 ~~~lhg~m~~~~R~~~~~~F~~g---~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~- 1179 (1493)
...+||+++..+|..+++.|... ...+|++|.+++.|||+..+++||+||+|.++..+.|++||+-|.|....+.+
T Consensus 514 y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~Vy 593 (1033)
T PLN03142 514 YCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVF 593 (1033)
T ss_pred EEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEE
Confidence 99999999999999999999753 34578999999999999999999999999999999999999999998765544
Q ss_pred -EecCC
Q psy16310 1180 -LIESD 1184 (1493)
Q Consensus 1180 -l~~~~ 1184 (1493)
|++.+
T Consensus 594 RLIt~g 599 (1033)
T PLN03142 594 RFCTEY 599 (1033)
T ss_pred EEEeCC
Confidence 44444
|
|
| >KOG0924|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=201.36 Aligned_cols=108 Identities=25% Similarity=0.397 Sum_probs=92.2
Q ss_pred CCCcEEEEecchhhHHHHHHHHHh----c------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCC
Q psy16310 543 HPGRTLVFCNSISSVKRLTQLLTM----L------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612 (1493)
Q Consensus 543 ~~~~~IIF~~s~~~a~~L~~~L~~----~------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~ 612 (1493)
.+|.+|||...++..+..+..++. + ++.++++++.|++.-|.++++.-..|-.+|+|||++|+..|.||+
T Consensus 562 ~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~g 641 (1042)
T KOG0924|consen 562 PPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPG 641 (1042)
T ss_pred CCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecc
Confidence 357899999998887766655532 2 577889999999999999999999999999999999999999999
Q ss_pred CcEEEEec------------------CCCChHHHHHHHhccccCCCCCeEEEEecCC
Q psy16310 613 IEHVIHYH------------------VPRTSEIYIHRSGRTARANNEGLTVVLIESD 651 (1493)
Q Consensus 613 v~~VI~yd------------------~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~ 651 (1493)
+.+||..+ .|.|-..--||.|||||.| +|.||.+|+.+
T Consensus 642 I~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 642 IRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred eEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 99999643 2455666789999999998 99999999874
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=202.08 Aligned_cols=291 Identities=20% Similarity=0.233 Sum_probs=193.3
Q ss_pred HHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHH
Q psy16310 781 RALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELE 860 (1493)
Q Consensus 781 ~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (1493)
+.+.+.....|+..|.-.... +..|++.-+.||||.|||.--++..+ .+
T Consensus 73 ~fF~k~~G~~~ws~QR~WakR-~~rg~SFaiiAPTGvGKTTfg~~~sl-~~----------------------------- 121 (1187)
T COG1110 73 EFFKKATGFRPWSAQRVWAKR-LVRGKSFAIIAPTGVGKTTFGLLMSL-YL----------------------------- 121 (1187)
T ss_pred HHHHHhhCCCchHHHHHHHHH-HHcCCceEEEcCCCCchhHHHHHHHH-HH-----------------------------
Confidence 334444333999999998875 45789999999999999964322222 11
Q ss_pred HhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCC-cEEEE-EEcCCCHHHHH----HHhcCCCcEEEECc
Q psy16310 861 EESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVAC-VVGGMSTEKQL----RILNKCPHILVATP 934 (1493)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~-~~v~~-~~gg~~~~~~~----~~l~~~~~IlV~TP 934 (1493)
...+.+++||+||+.|+.|+++.+..++...+ ..+.. .++..+..+.. +......||+|+|.
T Consensus 122 ------------a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs 189 (1187)
T COG1110 122 ------------AKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTS 189 (1187)
T ss_pred ------------HhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeH
Confidence 13446899999999999999999999986655 44444 44554544322 23345789999998
Q ss_pred HHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcc-------------------------------
Q psy16310 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM------------------------------- 983 (1493)
Q Consensus 935 ~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~------------------------------- 983 (1493)
+-|...+.. +.. .+++++++|.+|.++..+. .+..++..+..
T Consensus 190 ~FL~k~~e~----L~~-~kFdfifVDDVDA~Lkask--NvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~ 262 (1187)
T COG1110 190 QFLSKRFEE----LSK-LKFDFIFVDDVDAILKASK--NVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREEL 262 (1187)
T ss_pred HHHHhhHHH----hcc-cCCCEEEEccHHHHHhccc--cHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 777554432 111 2578999999998765431 11111111110
Q ss_pred --------cCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEecccccccccccee
Q psy16310 984 --------TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 1055 (1493)
Q Consensus 984 --------~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1055 (1493)
.......+++..|||..+.-.. ..-+...+++.. ........++..
T Consensus 263 ~~~e~~~~~~r~k~g~LvvsSATg~~rg~R--------------------~~LfReLlgFev------G~~~~~LRNIvD 316 (1187)
T COG1110 263 REVEREREKKRRKLGILVVSSATGKPRGSR--------------------LKLFRELLGFEV------GSGGEGLRNIVD 316 (1187)
T ss_pred HHHHHHHHHhccCCceEEEeeccCCCCCch--------------------HHHHHHHhCCcc------Cccchhhhheee
Confidence 0112446888999998643211 111112222221 111122333333
Q ss_pred eEEEecccchhhHHHHHHHhCCCcEEEEecc---hhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEE
Q psy16310 1056 SKILCKHDEKDSYLYYFILQHPGRTLVFCNS---ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132 (1493)
Q Consensus 1056 ~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s---~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLV 1132 (1493)
.++.. .-...+..++...+.-.|||++. ++.++.+++.|+..|+++..+|+. ....++.|..|+++|||
T Consensus 317 ~y~~~---~~~e~~~elvk~lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLV 388 (1187)
T COG1110 317 IYVES---ESLEKVVELVKKLGDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLV 388 (1187)
T ss_pred eeccC---ccHHHHHHHHHHhCCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEE
Confidence 33333 33444566667777789999999 999999999999999999999984 26789999999999999
Q ss_pred ee----hhhhccccCCC-ccEEEEecCC
Q psy16310 1133 AT----DVAARGLDIPG-IEHVIHYHVP 1155 (1493)
Q Consensus 1133 aT----dv~~~GiDip~-v~~VI~~d~p 1155 (1493)
.. .++-||||+|. +.++|.|++|
T Consensus 389 GvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 389 GVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred EecccccceeecCCchhheeEEEEecCC
Confidence 86 48999999997 7889999988
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=202.24 Aligned_cols=318 Identities=19% Similarity=0.249 Sum_probs=195.5
Q ss_pred HHHHHC-CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHH
Q psy16310 164 RALYQK-GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 242 (1493)
Q Consensus 164 ~~l~~~-g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1493)
+.+.+. || +|...|.--.. -+..|+..-+.||||.|||.--++..+. +
T Consensus 73 ~fF~k~~G~-~~ws~QR~Wak-R~~rg~SFaiiAPTGvGKTTfg~~~sl~-~---------------------------- 121 (1187)
T COG1110 73 EFFKKATGF-RPWSAQRVWAK-RLVRGKSFAIIAPTGVGKTTFGLLMSLY-L---------------------------- 121 (1187)
T ss_pred HHHHHhhCC-CchHHHHHHHH-HHHcCCceEEEcCCCCchhHHHHHHHHH-H----------------------------
Confidence 334444 55 89999976655 5667899999999999999754333321 1
Q ss_pred HHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCC-eEEEE-EEcCCCHHHHHH----HhcCCCCEEEeC
Q psy16310 243 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVAC-VVGGMSTEKQLR----ILNKCPHILVAT 316 (1493)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~-i~v~~-~~G~~~~~~~~~----~l~~~~~IiV~T 316 (1493)
...+.++++|+||+.|+.|+++.+..++...+ ..+.. +++..+...... ...++.||+|+|
T Consensus 122 -------------a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitT 188 (1187)
T COG1110 122 -------------AKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITT 188 (1187)
T ss_pred -------------HhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEe
Confidence 12346899999999999999999999876544 33333 556655544322 224568999999
Q ss_pred cHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCC--------ccccccccCCcchhhhh
Q psy16310 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ--------PRQTMIESGHFPELKNI 388 (1493)
Q Consensus 317 P~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~--------~~~~~~~~~~~~~~~~~ 388 (1493)
.+-|...+.. +.. .+++++++|.+|.++..+ ..+..++..+......- -+..+.......+..+.
T Consensus 189 s~FL~k~~e~----L~~-~kFdfifVDDVDA~Lkas--kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~ 261 (1187)
T COG1110 189 SQFLSKRFEE----LSK-LKFDFIFVDDVDAILKAS--KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREE 261 (1187)
T ss_pred HHHHHhhHHH----hcc-cCCCEEEEccHHHHHhcc--ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 9988655442 111 157999999999988765 33444444332211000 00000000000011111
Q ss_pred h---hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccc
Q psy16310 389 L---DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465 (1493)
Q Consensus 389 ~---~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1493)
. ............++++.|||..+.-.... -...+++..-..
T Consensus 262 ~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~--------------------LfReLlgFevG~--------------- 306 (1187)
T COG1110 262 LREVEREREKKRRKLGILVVSSATGKPRGSRLK--------------------LFRELLGFEVGS--------------- 306 (1187)
T ss_pred HHHHHHHHHHhccCCceEEEeeccCCCCCchHH--------------------HHHHHhCCccCc---------------
Confidence 0 00011123456789999999864321100 000111000000
Q ss_pred hhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCC
Q psy16310 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 545 (1493)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 545 (1493)
....+ .++.+.+... .-...+..++...+.
T Consensus 307 --------------------------~~~~L---------------------RNIvD~y~~~---~~~e~~~elvk~lG~ 336 (1187)
T COG1110 307 --------------------------GGEGL---------------------RNIVDIYVES---ESLEKVVELVKKLGD 336 (1187)
T ss_pred --------------------------cchhh---------------------hheeeeeccC---ccHHHHHHHHHHhCC
Confidence 00000 0111111111 223345566677778
Q ss_pred cEEEEecc---hhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEec----hhhccCCCCC-CcEEE
Q psy16310 546 RTLVFCNS---ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD----VAARGLDIPG-IEHVI 617 (1493)
Q Consensus 546 ~~IIF~~s---~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTd----v~~rGlDip~-v~~VI 617 (1493)
.+|||++. ++.++.++++|...|+.+..+|+. ..+.++.|..|++++||... ++-||||+|+ +.++|
T Consensus 337 GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaI 411 (1187)
T COG1110 337 GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAV 411 (1187)
T ss_pred CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEE
Confidence 99999999 999999999999999999999984 37889999999999999875 7889999997 78999
Q ss_pred EecCC
Q psy16310 618 HYHVP 622 (1493)
Q Consensus 618 ~yd~P 622 (1493)
.|++|
T Consensus 412 F~GvP 416 (1187)
T COG1110 412 FYGVP 416 (1187)
T ss_pred EecCC
Confidence 98887
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-17 Score=206.42 Aligned_cols=116 Identities=21% Similarity=0.295 Sum_probs=107.6
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEec--
Q psy16310 543 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH-- 620 (1493)
Q Consensus 543 ~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd-- 620 (1493)
.+.++||||+|+..++.|+.+|...|+.+..+||++++.+|..++..|+.|++.|||||+++++|+|+|++++||++|
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dad 520 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 520 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcc
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---CCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 621 ---VPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 621 ---~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
.|.+..+|+||+|||||. ..|.++++++..+......+
T Consensus 521 ifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 521 KEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred cccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHH
Confidence 899999999999999998 58999999987665554444
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7e-18 Score=211.38 Aligned_cols=297 Identities=22% Similarity=0.252 Sum_probs=196.0
Q ss_pred HhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEE
Q psy16310 801 SALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYAL 880 (1493)
Q Consensus 801 ~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 880 (1493)
.++....-++++||||||||...-.-+++..+ ..+..+.
T Consensus 60 ~ai~~~~vvii~getGsGKTTqlP~~lle~g~-----------------------------------------~~~g~I~ 98 (845)
T COG1643 60 KAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-----------------------------------------GIAGKIG 98 (845)
T ss_pred HHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-----------------------------------------ccCCeEE
Confidence 46777788999999999999863333332211 2234577
Q ss_pred EEcccHHHHHHHHHHHHH-hhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEe
Q psy16310 881 ILAPTRELAIQVQNHILD-AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVI 959 (1493)
Q Consensus 881 il~PTreLa~Q~~~~~~~-~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVl 959 (1493)
+.=|.|-=|.-+++.+.. ++...|-.|+.-+...+. ......|-++|.|.|+..+.... .|+.+++|||
T Consensus 99 ~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~------~s~~Trik~mTdGiLlrei~~D~----~Ls~ys~vIi 168 (845)
T COG1643 99 CTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESK------VSPRTRIKVMTDGILLREIQNDP----LLSGYSVVII 168 (845)
T ss_pred ecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeecc------CCCCceeEEeccHHHHHHHhhCc----ccccCCEEEE
Confidence 777988766777666544 444445555554432211 12345799999999999988654 3778999999
Q ss_pred cccchh-ccCCC-hhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCC
Q psy16310 960 DETDRM-IESGH-FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS 1037 (1493)
Q Consensus 960 DEah~l-l~~~~-~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1037 (1493)
||||.= ++..+ ...+..++... +++..++++|||+...-... . +.+
T Consensus 169 DEaHERSl~tDilLgllk~~~~~r-----r~DLKiIimSATld~~rfs~---~------------------------f~~ 216 (845)
T COG1643 169 DEAHERSLNTDILLGLLKDLLARR-----RDDLKLIIMSATLDAERFSA---Y------------------------FGN 216 (845)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhc-----CCCceEEEEecccCHHHHHH---H------------------------cCC
Confidence 999962 12111 11122223222 34588999999997432211 1 111
Q ss_pred CcEEeccccccccccceeeEEE-ecccc-hhhHHHHH----HHhCCCcEEEEecchhhHHHHHHHHHh--c--CCCcccc
Q psy16310 1038 PKIVDLTEKIGITKTLTESKIL-CKHDE-KDSYLYYF----ILQHPGRTLVFCNSISSVKRLTQLLTM--L--KCSPLPL 1107 (1493)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-k~~~l~~~----l~~~~~~~IVF~~s~~~~~~l~~~L~~--~--~~~~~~l 1107 (1493)
..++.+..... .+.-.|.. ...+. -...+... +....|.+|||.+.....+.+++.|.. + ...+.++
T Consensus 217 apvi~i~GR~f---PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PL 293 (845)
T COG1643 217 APVIEIEGRTY---PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPL 293 (845)
T ss_pred CCEEEecCCcc---ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeec
Confidence 22222221111 11111111 11111 12222222 233478999999999999999999987 3 4678899
Q ss_pred ccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEe--------cC----------CCChhHHHHHHhccC
Q psy16310 1108 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY--------HV----------PRTSEIYIHRSGRTA 1169 (1493)
Q Consensus 1108 hg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~--------d~----------p~s~~~yiqr~GR~g 1169 (1493)
||.|+..++.++++--..|..+|++||++++.+|.||+|.+||.- ++ |.|-.+.-||.||||
T Consensus 294 y~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAG 373 (845)
T COG1643 294 YGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAG 373 (845)
T ss_pred cccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccc
Confidence 999999999998888777877899999999999999999999963 32 456788999999999
Q ss_pred CCCCCCeEEEEecCC
Q psy16310 1170 RANNEGLTLVLIESD 1184 (1493)
Q Consensus 1170 R~g~~G~~i~l~~~~ 1184 (1493)
|-+ +|.||-+++..
T Consensus 374 R~~-pGicyRLyse~ 387 (845)
T COG1643 374 RTG-PGICYRLYSEE 387 (845)
T ss_pred cCC-CceEEEecCHH
Confidence 986 89999999763
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.1e-17 Score=213.11 Aligned_cols=115 Identities=23% Similarity=0.310 Sum_probs=82.5
Q ss_pred HHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcC--CCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCC
Q psy16310 535 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK--CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612 (1493)
Q Consensus 535 ~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~--~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~ 612 (1493)
.+..++...++++|||++|+...+.++..|.... .....+..+.. ..|..+++.|+.|+..||+||+.+.+|||+|+
T Consensus 665 ~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g 743 (850)
T TIGR01407 665 YIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPG 743 (850)
T ss_pred HHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCC
Confidence 3444455567899999999999999999987521 12223333333 57888999999999999999999999999999
Q ss_pred Cc--EEEEecCC----CC--------------------------hHHHHHHHhccccCCCCCeEEEEecC
Q psy16310 613 IE--HVIHYHVP----RT--------------------------SEIYIHRSGRTARANNEGLTVVLIES 650 (1493)
Q Consensus 613 v~--~VI~yd~P----~s--------------------------~~~yiQR~GRagR~g~~G~~i~l~~~ 650 (1493)
.. .||...+| .+ ...+.|.+||.=|.....-++++++.
T Consensus 744 ~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 744 NGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred CceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 77 45666655 21 23346999999998755334444444
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >KOG0949|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-17 Score=198.96 Aligned_cols=164 Identities=19% Similarity=0.221 Sum_probs=113.6
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.|..||.+.+. .+-.+..++++|||.+|||++--- ++..+++.
T Consensus 511 ~Pd~WQ~elLD-svDr~eSavIVAPTSaGKTfisfY-~iEKVLRe----------------------------------- 553 (1330)
T KOG0949|consen 511 CPDEWQRELLD-SVDRNESAVIVAPTSAGKTFISFY-AIEKVLRE----------------------------------- 553 (1330)
T ss_pred CCcHHHHHHhh-hhhcccceEEEeeccCCceeccHH-HHHHHHhh-----------------------------------
Confidence 58899999997 777788999999999999997332 22333321
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcC-CCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGK-YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~-~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~ 331 (1493)
....-+|+++||++|+.|+......... .+-.+...+.|......+.. .-+|+|+|+-|+.|-.+|.......
T Consensus 554 ----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q 627 (1330)
T KOG0949|consen 554 ----SDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQ 627 (1330)
T ss_pred ----cCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhh
Confidence 2234599999999999999777655542 22233444555554444332 2358999999999988887654455
Q ss_pred cccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccc
Q psy16310 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411 (1493)
Q Consensus 332 ~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~ 411 (1493)
.+..+++++|+||+|.+....-.-.+++++..+ ++.++++|||+.
T Consensus 628 ~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li-----------------------------------~CP~L~LSATig 672 (1330)
T KOG0949|consen 628 KFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI-----------------------------------PCPFLVLSATIG 672 (1330)
T ss_pred hhhhcceEEEechhhhccccccchHHHHHHHhc-----------------------------------CCCeeEEecccC
Confidence 567799999999999875443333344444322 368999999997
Q ss_pred hhh
Q psy16310 412 HSL 414 (1493)
Q Consensus 412 ~~~ 414 (1493)
+..
T Consensus 673 N~~ 675 (1330)
T KOG0949|consen 673 NPN 675 (1330)
T ss_pred CHH
Confidence 643
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-17 Score=207.61 Aligned_cols=322 Identities=15% Similarity=0.090 Sum_probs=179.2
Q ss_pred CCcHHHHhhHHHhhcc---------CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHH
Q psy16310 790 TPTKIQSMVMPSALLA---------RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELE 860 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~---------~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (1493)
.|+++|..|+..++.. .+..+++.+||||||++++..+.. ++.
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~-l~~--------------------------- 289 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARK-ALE--------------------------- 289 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHH-HHh---------------------------
Confidence 3788999998755421 357899999999999986655432 221
Q ss_pred HhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc-CCCcEEEECcHHHHH
Q psy16310 861 EESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-KCPHILVATPGRLWE 939 (1493)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~TP~rl~~ 939 (1493)
....+++|||+|+++|..|+.+.|..++... ..+..+...-...+. ....|+|+|.+.|..
T Consensus 290 ------------~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~ 351 (667)
T TIGR00348 290 ------------LLKNPKVFFVVDRRELDYQLMKEFQSLQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDK 351 (667)
T ss_pred ------------hcCCCeEEEEECcHHHHHHHHHHHHhhCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhh
Confidence 1234679999999999999999999876321 111112222223333 235899999999976
Q ss_pred HHHhCcCccccccceeEEEecccchhccCCChhHHHHHH-HHhcccCCCCCceEEEEecccccchHhHHhhhccCcCccc
Q psy16310 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNIL-DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 1018 (1493)
Q Consensus 940 ~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il-~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~ 1018 (1493)
.+.........-..--+||+||||+.... .+...+ ..+ ++...++||||+-...........+......
T Consensus 352 ~~~~~~~~~~~~~~~~lvIvDEaHrs~~~----~~~~~l~~~~------p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~ 421 (667)
T TIGR00348 352 KLKEEEEKFPVDRKEVVVIFDEAHRSQYG----ELAKNLKKAL------KNASFFGFTGTPIFKKDRDTSLTFAYVFGRY 421 (667)
T ss_pred hHhhhhhccCCCCCCEEEEEEcCccccch----HHHHHHHhhC------CCCcEEEEeCCCcccccccccccccCCCCCe
Confidence 44321111110001128999999985432 333333 333 4578999999996321100000000000000
Q ss_pred ccCCCchhHHHHhHhccCCCcEEeccc------cccccccceeeE-----------------------EEecccchhhHH
Q psy16310 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTE------KIGITKTLTESK-----------------------ILCKHDEKDSYL 1069 (1493)
Q Consensus 1019 ~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-----------------------~~~~~~~k~~~l 1069 (1493)
+.. -.+......- .-.+....... .......+.... ...........+
T Consensus 422 i~~--Y~~~~AI~dG-~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i 498 (667)
T TIGR00348 422 LHR--YFITDAIRDG-LTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESI 498 (667)
T ss_pred EEE--eeHHHHhhcC-CeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHH
Confidence 000 0000000000 00000000000 000000000000 000011111111
Q ss_pred HHHHH--------hCCCcEEEEecchhhHHHHHHHHHhcC-----CCccccccCCCHH---------------------H
Q psy16310 1070 YYFIL--------QHPGRTLVFCNSISSVKRLTQLLTMLK-----CSPLPLHASMNQR---------------------Q 1115 (1493)
Q Consensus 1070 ~~~l~--------~~~~~~IVF~~s~~~~~~l~~~L~~~~-----~~~~~lhg~m~~~---------------------~ 1115 (1493)
...+. ..+++++|||.++.+|..++..|.... .....+++..... .
T Consensus 499 a~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (667)
T TIGR00348 499 AKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEI 578 (667)
T ss_pred HHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhH
Confidence 11111 124899999999999999999986652 3344455543222 2
Q ss_pred HHHHHHHHhc-CCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCC
Q psy16310 1116 RLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171 (1493)
Q Consensus 1116 R~~~~~~F~~-g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~ 1171 (1493)
...++++|+. +..+|||.+|.+..|+|.|.+++++...+..+ ..++|.+||+.|.
T Consensus 579 ~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 579 YYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred HHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccc
Confidence 2478889986 68899999999999999999999998776665 4589999999994
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-17 Score=209.19 Aligned_cols=333 Identities=20% Similarity=0.223 Sum_probs=203.4
Q ss_pred ChHHHHhhhhhhhcc--CC-cEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcch
Q psy16310 174 PTKIQSMVMPSALLA--RK-DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250 (1493)
Q Consensus 174 pt~iQ~~~i~~~l~~--~~-dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1493)
+++.|..++..++.. .. .+++.||||+|||.+.+++++..+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~--------------------------------- 242 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--------------------------------- 242 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc---------------------------------
Confidence 488999988755432 34 788999999999999999988665321
Q ss_pred hhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH-----h---------cCCCCEEEeC
Q psy16310 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI-----L---------NKCPHILVAT 316 (1493)
Q Consensus 251 ~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~-----l---------~~~~~IiV~T 316 (1493)
.....+++++.|++.++.++++.+.......++......|.......... . .....++++|
T Consensus 243 -----~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~ 317 (733)
T COG1203 243 -----IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVT 317 (733)
T ss_pred -----ccccceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccC
Confidence 12456899999999999999999998765544333322333221111000 0 0012455666
Q ss_pred cHHHHHHHHcCCcccccc--ccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccc
Q psy16310 317 PGRLWEFIQLGHFHLTEL--YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTM 394 (1493)
Q Consensus 317 P~~L~~~l~~~~~~~~~l--~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1493)
|-.........+ .+..+ -..+++||||+|.+-+..-...+..++..+..
T Consensus 318 ~~~~~~~~~~~~-~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~---------------------------- 368 (733)
T COG1203 318 PIQILIFSVKGF-KFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAE---------------------------- 368 (733)
T ss_pred HhHhhhhhcccc-chHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHh----------------------------
Confidence 655544222111 11101 13578999999977544344445555544432
Q ss_pred cCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccC
Q psy16310 395 TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD 474 (1493)
Q Consensus 395 ~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1493)
....+|++|||+|+.+...+............... .+...
T Consensus 369 ----~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~------------------------------------~~~~~ 408 (733)
T COG1203 369 ----AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAK------------------------------------FCPKE 408 (733)
T ss_pred ----CCCCEEEEecCCCHHHHHHHHHHHhcccceecccc------------------------------------ccccc
Confidence 23579999999998877665432211110000000 00000
Q ss_pred CcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecch
Q psy16310 475 EKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSI 554 (1493)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~ 554 (1493)
.... +........ ... +. .-...+...-...+.+++|-|||.
T Consensus 409 ~e~~-----~~~~~~~~~-------~~~--~~------------------------~~~~~~~~~~~~~~~kvlvI~NTV 450 (733)
T COG1203 409 DEPG-----LKRKERVDV-------EDG--PQ------------------------EELIELISEEVKEGKKVLVIVNTV 450 (733)
T ss_pred cccc-----cccccchhh-------hhh--hh------------------------HhhhhcchhhhccCCcEEEEEecH
Confidence 0000 000000000 000 00 000000000112357999999999
Q ss_pred hhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHH----hcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHH
Q psy16310 555 SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF----RDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630 (1493)
Q Consensus 555 ~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~F----r~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQ 630 (1493)
..|.+++..|+..+..++.+||.++..+|.+.++.+ ..+...|+|||.|.+-|+|+ +++++|-= +..+.+.+|
T Consensus 451 ~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mITe--~aPidSLIQ 527 (733)
T COG1203 451 DRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLITE--LAPIDSLIQ 527 (733)
T ss_pred HHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeeeec--CCCHHHHHH
Confidence 999999999999888899999999999998777754 45788999999999999999 58877654 444889999
Q ss_pred HHhccccCC--CCCeEEEEecCCcch
Q psy16310 631 RSGRTARAN--NEGLTVVLIESDEIP 654 (1493)
Q Consensus 631 R~GRagR~g--~~G~~i~l~~~~e~~ 654 (1493)
|+||++|.| ..|..+++......+
T Consensus 528 R~GRv~R~g~~~~~~~~v~~~~~~~~ 553 (733)
T COG1203 528 RAGRVNRHGKKENGKIYVYNDEERGP 553 (733)
T ss_pred HHHHHhhcccccCCceeEeecccCCC
Confidence 999999999 567777666554433
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-16 Score=202.80 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=85.5
Q ss_pred hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCC--ccEEEEe
Q psy16310 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG--IEHVIHY 1152 (1493)
Q Consensus 1075 ~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~--v~~VI~~ 1152 (1493)
..+|+++|+++|.+..+.++..|......+ ...|.-. .|..++++|+.++..||++|+.+.+|+|+|+ ...||..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 568999999999999999999997654444 3334221 2566899999999999999999999999973 4556665
Q ss_pred cCC----CC--------------------------hhHHHHHHhccCCCCC-CCeEEEEecCC--CHHHHHHHHHhccc
Q psy16310 1153 HVP----RT--------------------------SEIYIHRSGRTARANN-EGLTLVLIESD--EIPLYIKMFNSLEK 1198 (1493)
Q Consensus 1153 d~p----~s--------------------------~~~yiqr~GR~gR~g~-~G~~i~l~~~~--e~~~~~~~~~~~~~ 1198 (1493)
.+| .+ ...+.|-+||.-|... .| +++++++. ...+-+.+.+.+..
T Consensus 722 kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~G-vv~ilD~R~~~k~Yg~~~l~sLP~ 799 (820)
T PRK07246 722 RLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKS-AVLILDRRILTKSYGKQILASLAE 799 (820)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcE-EEEEECCcccccHHHHHHHHhCCC
Confidence 555 22 1235799999999865 45 45555544 23455677777654
|
|
| >KOG0922|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=187.72 Aligned_cols=299 Identities=20% Similarity=0.233 Sum_probs=194.1
Q ss_pred hhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEE
Q psy16310 802 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 881 (1493)
Q Consensus 802 ~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 881 (1493)
.+..++-+|+.|+||||||.- +| +.++... ......+.+
T Consensus 62 ~ve~nqvlIviGeTGsGKSTQ--ip--QyL~eaG-------------------------------------~~~~g~I~~ 100 (674)
T KOG0922|consen 62 AVEDNQVLIVIGETGSGKSTQ--IP--QYLAEAG-------------------------------------FASSGKIAC 100 (674)
T ss_pred HHHHCCEEEEEcCCCCCcccc--Hh--HHHHhcc-------------------------------------cccCCcEEe
Confidence 556778899999999999974 44 2222211 112223777
Q ss_pred EcccHHHHHHHHHHHH-HhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEec
Q psy16310 882 LAPTRELAIQVQNHIL-DAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVID 960 (1493)
Q Consensus 882 l~PTreLa~Q~~~~~~-~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlD 960 (1493)
--|.|--|.-+++... +++...|-.|+.-+.-.+. ......|.+.|-|.|+..+.... .|.+.++||+|
T Consensus 101 TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~------ts~~TrikymTDG~LLRE~l~Dp----~LskYsvIIlD 170 (674)
T KOG0922|consen 101 TQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDS------TSKDTRIKYMTDGMLLREILKDP----LLSKYSVIILD 170 (674)
T ss_pred ecCchHHHHHHHHHHHHHhCCCcCceeeeEEEeccc------CCCceeEEEecchHHHHHHhcCC----ccccccEEEEe
Confidence 7799887777766543 3554556555554432111 11234799999999988775433 47789999999
Q ss_pred ccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcE
Q psy16310 961 ETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 1040 (1493)
Q Consensus 961 Eah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 1040 (1493)
|||.=. -+-+-+..+++.+... .+...++++|||+.-...... +....+
T Consensus 171 EAHERs--l~TDiLlGlLKki~~~--R~~LklIimSATlda~kfS~y---------------------------F~~a~i 219 (674)
T KOG0922|consen 171 EAHERS--LHTDILLGLLKKILKK--RPDLKLIIMSATLDAEKFSEY---------------------------FNNAPI 219 (674)
T ss_pred chhhhh--hHHHHHHHHHHHHHhc--CCCceEEEEeeeecHHHHHHH---------------------------hcCCce
Confidence 999611 1123344444444322 355789999999963322111 111222
Q ss_pred EeccccccccccceeeEEEecccchh-hHHHHH----HHhCCCcEEEEecchhhHHHHHHHHHhc----CC----Ccccc
Q psy16310 1041 VDLTEKIGITKTLTESKILCKHDEKD-SYLYYF----ILQHPGRTLVFCNSISSVKRLTQLLTML----KC----SPLPL 1107 (1493)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~~~~k~-~~l~~~----l~~~~~~~IVF~~s~~~~~~l~~~L~~~----~~----~~~~l 1107 (1493)
+.+..... .+...+...+..+-. ..+... +...+|-+|||....+..+.+++.|.+. +- -+.++
T Consensus 220 ~~i~GR~f---PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lpl 296 (674)
T KOG0922|consen 220 LTIPGRTF---PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPL 296 (674)
T ss_pred EeecCCCC---ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeee
Confidence 22222111 111111111111111 111111 1234788999999999999999998765 11 24679
Q ss_pred ccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEE--------ecC----------CCChhHHHHHHhccC
Q psy16310 1108 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH--------YHV----------PRTSEIYIHRSGRTA 1169 (1493)
Q Consensus 1108 hg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~--------~d~----------p~s~~~yiqr~GR~g 1169 (1493)
||.|+.+++.++++.-..|..+|++||++++..+-||++.+||. |++ |-|..+-.||.||||
T Consensus 297 y~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAG 376 (674)
T KOG0922|consen 297 YGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAG 376 (674)
T ss_pred cccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCC
Confidence 99999999999998888899999999999999999999999996 333 567788899999999
Q ss_pred CCCCCCeEEEEecCCCH
Q psy16310 1170 RANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1170 R~g~~G~~i~l~~~~e~ 1186 (1493)
|.| +|.|+-+++..+.
T Consensus 377 Rt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 377 RTG-PGKCYRLYTESAY 392 (674)
T ss_pred CCC-CceEEEeeeHHHH
Confidence 986 8999999987654
|
|
| >KOG0920|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-16 Score=196.80 Aligned_cols=342 Identities=21% Similarity=0.243 Sum_probs=202.6
Q ss_pred hHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhh
Q psy16310 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 254 (1493)
Q Consensus 175 t~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1493)
+..+.+.+ .++..++.++|++.||+|||...---++......
T Consensus 175 ~~~r~~Il-~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~------------------------------------- 216 (924)
T KOG0920|consen 175 YKMRDTIL-DAIEENQVVVISGETGCGKTTQVPQFILDEAIES------------------------------------- 216 (924)
T ss_pred HHHHHHHH-HHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc-------------------------------------
Confidence 44455555 4888889999999999999997433344433221
Q ss_pred cccCceEEEEEcccHHHHHHHHHHH-HHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccc
Q psy16310 255 KTRNKLYALILAPTRELAIQVQNHI-LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 333 (1493)
Q Consensus 255 ~~~~~~~aLiL~PTreLa~Qi~~~~-~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~ 333 (1493)
.....+++--|.|--|.-+++.. .+.+...|-.|+.-.+..+... ....+++||.|.|++.|..+. .
T Consensus 217 --~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s------~~t~L~fcTtGvLLr~L~~~~----~ 284 (924)
T KOG0920|consen 217 --GAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESKRS------RETRLLFCTTGVLLRRLQSDP----T 284 (924)
T ss_pred --CCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeecccC------CceeEEEecHHHHHHHhccCc----c
Confidence 12345888889988877776654 3444444433333333222111 124799999999999998632 3
Q ss_pred cccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchh
Q psy16310 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 413 (1493)
Q Consensus 334 l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~ 413 (1493)
+..+.+||+||+|.-.- ..+-+..+++.+-.. .+..++|+||||+..+
T Consensus 285 l~~vthiivDEVHER~i--~~DflLi~lk~lL~~------------------------------~p~LkvILMSAT~dae 332 (924)
T KOG0920|consen 285 LSGVTHIIVDEVHERSI--NTDFLLILLKDLLPR------------------------------NPDLKVILMSATLDAE 332 (924)
T ss_pred cccCceeeeeeEEEccC--CcccHHHHHHHHhhh------------------------------CCCceEEEeeeecchH
Confidence 66899999999997522 222233333333111 3567999999999754
Q ss_pred hhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchh
Q psy16310 414 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493 (1493)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (1493)
....+.. ....+.+.+. +... ...|+-..+....
T Consensus 333 ~fs~YF~---------------------------~~pvi~i~gr---tfpV-----------~~~fLEDil~~~~----- 366 (924)
T KOG0920|consen 333 LFSDYFG---------------------------GCPVITIPGR---TFPV-----------KEYFLEDILSKTG----- 366 (924)
T ss_pred HHHHHhC---------------------------CCceEeecCC---Ccch-----------HHHHHHHHHHHhc-----
Confidence 4332210 0000000000 0000 0000000000000
Q ss_pred hHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHH---h--hCCCcEEEEecchhhHHHHHHHHHhc-
Q psy16310 494 EEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI---L--QHPGRTLVFCNSISSVKRLTQLLTML- 567 (1493)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l---~--~~~~~~IIF~~s~~~a~~L~~~L~~~- 567 (1493)
.......+....-...... .. ......+....++..++ . ..+|.+|||.++..+...+...|...
T Consensus 367 ----~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~ 437 (924)
T KOG0920|consen 367 ----YVSEDDSARSGPERSQLRL-AR----LKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNL 437 (924)
T ss_pred ----ccccccccccccccCcccc-cc----chhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcc
Confidence 0000000000000000000 00 00000011112222222 1 23689999999999999999999642
Q ss_pred ------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE--------ecCCCChHH------
Q psy16310 568 ------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH--------YHVPRTSEI------ 627 (1493)
Q Consensus 568 ------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~--------yd~P~s~~~------ 627 (1493)
.+-+.++|+.|+..++..++..-..|..+|++||++|+.+|.|++|-+||. ||+-.+...
T Consensus 438 ~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wv 517 (924)
T KOG0920|consen 438 PFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWV 517 (924)
T ss_pred ccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeec
Confidence 245678999999999999999999999999999999999999999999994 776655443
Q ss_pred ----HHHHHhccccCCCCCeEEEEecCCcch
Q psy16310 628 ----YIHRSGRTARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 628 ----yiQR~GRagR~g~~G~~i~l~~~~e~~ 654 (1493)
-.||.|||||.- +|.||.+|+.....
T Consensus 518 SkAna~QR~GRAGRv~-~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 518 SKANAKQRRGRAGRVR-PGICYHLYTRSRYE 547 (924)
T ss_pred cccchHHhcccccCcc-CCeeEEeechhhhh
Confidence 369999999975 99999999886544
|
|
| >KOG0949|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-16 Score=188.84 Aligned_cols=163 Identities=19% Similarity=0.218 Sum_probs=116.6
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.|-.||.+.+. .+..+..++++|||.+|||.+.-- .++.++..
T Consensus 511 ~Pd~WQ~elLD-svDr~eSavIVAPTSaGKTfisfY-~iEKVLRe----------------------------------- 553 (1330)
T KOG0949|consen 511 CPDEWQRELLD-SVDRNESAVIVAPTSAGKTFISFY-AIEKVLRE----------------------------------- 553 (1330)
T ss_pred CCcHHHHHHhh-hhhcccceEEEeeccCCceeccHH-HHHHHHhh-----------------------------------
Confidence 57889999996 677889999999999999987433 34444432
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhh-CCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCcc
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAG-KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~-~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~ 948 (1493)
....-+|+++||.+|+.|+...+.... ...-.+...+.|....+.+.. .-+|+|+|+-|+-+-.+|-......
T Consensus 554 ----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q 627 (1330)
T KOG0949|consen 554 ----SDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQ 627 (1330)
T ss_pred ----cCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhh
Confidence 223469999999999999998887765 223344445556555444433 2257999999999988886543344
Q ss_pred ccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 949 ~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
....+++++|+||+|.+....-.--.+.++-. .+..++++|||+.+.
T Consensus 628 ~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l-------i~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 628 KFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL-------IPCPFLVLSATIGNP 674 (1330)
T ss_pred hhhhcceEEEechhhhccccccchHHHHHHHh-------cCCCeeEEecccCCH
Confidence 55778999999999998655433344444443 357899999999864
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=192.24 Aligned_cols=315 Identities=19% Similarity=0.223 Sum_probs=188.5
Q ss_pred CCCcHHHHhhHHHhh---c-cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 789 KTPTKIQSMVMPSAL---L-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l---~-~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
..|+.+|..||.... . +.+.+++++.||+|||..+ +.++.+|+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~------------------------------ 212 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKS------------------------------ 212 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhc------------------------------
Confidence 468999999997443 2 3346999999999999885 4566666542
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhC
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~ 944 (1493)
....++|+|+-++.|+.|.+..+..+. ..+-.+..+.+-... ..++|.|+|-.++...+...
T Consensus 213 ---------~~~KRVLFLaDR~~Lv~QA~~af~~~~-P~~~~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~ 274 (875)
T COG4096 213 ---------GWVKRVLFLADRNALVDQAYGAFEDFL-PFGTKMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQK 274 (875)
T ss_pred ---------chhheeeEEechHHHHHHHHHHHHHhC-CCccceeeeecccCC--------cceeEEEeehHHHHhhhhcc
Confidence 334579999999999999999988875 333333333331111 13589999999998877654
Q ss_pred cCcccccc--ceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhc-cCcCcccccC
Q psy16310 945 HFHLTELY--KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK-GQSKSKKVSK 1021 (1493)
Q Consensus 945 ~~~~~~l~--~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~-~~~~~~~~~~ 1021 (1493)
......+. .+++||+||||+ |.+.....|+.++- .-+++++||+.......-.... +.+.. ..
T Consensus 275 ~~~~~~f~~g~FDlIvIDEaHR----gi~~~~~~I~dYFd-------A~~~gLTATP~~~~d~~T~~~F~g~Pt~-~Y-- 340 (875)
T COG4096 275 EDEYRRFGPGFFDLIVIDEAHR----GIYSEWSSILDYFD-------AATQGLTATPKETIDRSTYGFFNGEPTY-AY-- 340 (875)
T ss_pred ccccccCCCCceeEEEechhhh----hHHhhhHHHHHHHH-------HHHHhhccCcccccccccccccCCCcce-ee--
Confidence 22222333 489999999999 44455567777763 1233448888753322111111 10000 00
Q ss_pred CCchhHHHHhHhccCCCcEEeccccc-------------------cc--------cccceeeEEEecccc-hhhHHHHHH
Q psy16310 1022 GDPSIKRLQDLLNIKSPKIVDLTEKI-------------------GI--------TKTLTESKILCKHDE-KDSYLYYFI 1073 (1493)
Q Consensus 1022 ~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------~~--------~~~~~~~~~~~~~~~-k~~~l~~~l 1073 (1493)
+++.-..--.+-++..+.+.... .+ ...+....+.....+ -...+...+
T Consensus 341 ---sleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l 417 (875)
T COG4096 341 ---SLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYL 417 (875)
T ss_pred ---cHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHh
Confidence 00000000001111111110000 00 000000000000011 111222222
Q ss_pred Hh-----CCCcEEEEecchhhHHHHHHHHHhcC-----CCccccccCCCHHHHHHHHHHHhc--CCCCeEEeehhhhccc
Q psy16310 1074 LQ-----HPGRTLVFCNSISSVKRLTQLLTMLK-----CSPLPLHASMNQRQRLKNLDRFRD--QNNSILLATDVAARGL 1141 (1493)
Q Consensus 1074 ~~-----~~~~~IVF~~s~~~~~~l~~~L~~~~-----~~~~~lhg~m~~~~R~~~~~~F~~--g~~~VLVaTdv~~~Gi 1141 (1493)
.. ..++|||||.+..+|+.+...|.... --+..+.|+-.+.+ ..++.|.. .--+|.|+.+++..|+
T Consensus 418 ~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGi 495 (875)
T COG4096 418 KRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGV 495 (875)
T ss_pred ccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhH--HHHHHHHhcCCCCceEEehhhhhcCC
Confidence 22 14699999999999999999998753 22444566644443 34555654 3347889999999999
Q ss_pred cCCCccEEEEecCCCChhHHHHHHhccCCC
Q psy16310 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171 (1493)
Q Consensus 1142 Dip~v~~VI~~d~p~s~~~yiqr~GR~gR~ 1171 (1493)
|+|.|.++|.+..-.|..-|.|++||+-|.
T Consensus 496 Dvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 496 DVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred CchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 999999999999999999999999999995
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=200.46 Aligned_cols=136 Identities=21% Similarity=0.257 Sum_probs=117.2
Q ss_pred hhhHHHHHHHh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccc
Q psy16310 1065 KDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141 (1493)
Q Consensus 1065 k~~~l~~~l~~---~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~Gi 1141 (1493)
+...++..+.. .+.++||||+|+..++.|+..|...|+.+..+||+|++.+|..++..|+.|++.|||||+++++|+
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 34445555543 467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEecC-----CCChhHHHHHHhccCCCCCCCeEEEEecC---------CCHHHHHHHHHhccccCC
Q psy16310 1142 DIPGIEHVIHYHV-----PRTSEIYIHRSGRTARANNEGLTLVLIES---------DEIPLYIKMFNSLEKKVD 1201 (1493)
Q Consensus 1142 Dip~v~~VI~~d~-----p~s~~~yiqr~GR~gR~g~~G~~i~l~~~---------~e~~~~~~~~~~~~~~~~ 1201 (1493)
|+|++++||++|. |.+..+|+||+|||||. ..|.+++|++. .|....++++..++....
T Consensus 511 dlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 583 (652)
T PRK05298 511 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHG 583 (652)
T ss_pred cccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999885 78999999999999996 78999999985 355566666666655443
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-16 Score=192.72 Aligned_cols=369 Identities=18% Similarity=0.208 Sum_probs=208.0
Q ss_pred CCChHHHHhhhhhhhcc---CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 172 KTPTKIQSMVMPSALLA---RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 172 ~~pt~iQ~~~i~~~l~~---~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
..+++-|+.++..+... -...++.+.||||||.+|+=.|-..+.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~--------------------------------- 243 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA--------------------------------- 243 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH---------------------------------
Confidence 35778899998754433 367899999999999999776655442
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHH----HHHhcCCCCEEEeCcHHHHHHH
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ----LRILNKCPHILVATPGRLWEFI 324 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~----~~~l~~~~~IiV~TP~~L~~~l 324 (1493)
.|..||||+|-..|-.|+.+.|+... +.++..++++.+.... .....+...|+|+|-..|
T Consensus 244 ---------~GkqvLvLVPEI~Ltpq~~~rf~~rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl---- 307 (730)
T COG1198 244 ---------QGKQVLVLVPEIALTPQLLARFKARF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL---- 307 (730)
T ss_pred ---------cCCEEEEEeccccchHHHHHHHHHHh---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh----
Confidence 34579999999999999999998875 5788888888765443 333446789999998766
Q ss_pred HcCCccccccccccEEEEecCchhhh---cCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCc
Q psy16310 325 QLGHFHLTELYKINYLVIDETDRMIE---SGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPR 401 (1493)
Q Consensus 325 ~~~~~~~~~l~~i~~lViDEAh~ll~---~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1493)
+..|.++.+|||||-|--.- .+..-+.+.+- -.+. ....+
T Consensus 308 ------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA-------------------------~~Ra------~~~~~ 350 (730)
T COG1198 308 ------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVA-------------------------VLRA------KKENA 350 (730)
T ss_pred ------cCchhhccEEEEeccccccccCCcCCCcCHHHHH-------------------------HHHH------HHhCC
Confidence 22466899999999995320 01111111111 1110 12346
Q ss_pred eEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhH
Q psy16310 402 QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 481 (1493)
Q Consensus 402 q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1493)
++|+-|||.+-+ .+.+...+......+....... . .....+++..........
T Consensus 351 pvvLgSATPSLE--S~~~~~~g~y~~~~L~~R~~~a-~------~p~v~iiDmr~e~~~~~~------------------ 403 (730)
T COG1198 351 PVVLGSATPSLE--SYANAESGKYKLLRLTNRAGRA-R------LPRVEIIDMRKEPLETGR------------------ 403 (730)
T ss_pred CEEEecCCCCHH--HHHhhhcCceEEEEcccccccc-C------CCcceEEeccccccccCc------------------
Confidence 899999998633 2222222211111111110000 0 000000000000000000
Q ss_pred HHHhcCCCcchhhHHHhhhhccCCccccccccc---------------------cccccccccccccccCchhhHHHHHH
Q psy16310 482 YFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI---------------------GITKTLTESKILCKHDEKDSYLYYFI 540 (1493)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~k~~~l~~~l 540 (1493)
.-...+.+.+...+......+.-+.+.. .+..........|..-......-...
T Consensus 404 -----~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~C 478 (730)
T COG1198 404 -----SLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSC 478 (730)
T ss_pred -----cCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCC
Confidence 0000111111111111111111111100 00000000111111111110000001
Q ss_pred hhCCCcEEEEecchhhHHHHHHHHHhc--CCCccccccCCCHHH--HHHHHHHHhcCCCeEEEEechhhccCCCCCCcEE
Q psy16310 541 LQHPGRTLVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQ--RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 616 (1493)
Q Consensus 541 ~~~~~~~IIF~~s~~~a~~L~~~L~~~--~~~~~~lhg~~~~~~--R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~V 616 (1493)
-+-++..|+++-. -++++.+.|... +..+..+.++.+... -...+..|..|+..|||.|.+++.|+|+|++++|
T Consensus 479 p~Cgs~~L~~~G~--GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLV 556 (730)
T COG1198 479 PECGSEHLRAVGP--GTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLV 556 (730)
T ss_pred CCCCCCeeEEecc--cHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEE
Confidence 1113445777655 466777777665 566777888776644 3678999999999999999999999999999998
Q ss_pred EEecCC------------CChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 617 IHYHVP------------RTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 617 I~yd~P------------~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
...|.- .....+.|-+|||||++.+|.+++-....|-+.+..+.
T Consensus 557 gvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~ 612 (730)
T COG1198 557 GVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALK 612 (730)
T ss_pred EEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHH
Confidence 765443 22455789999999999999998887777766655553
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-14 Score=166.15 Aligned_cols=120 Identities=22% Similarity=0.283 Sum_probs=105.7
Q ss_pred cchhhHHHHHHH---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhc
Q psy16310 1063 DEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAAR 1139 (1493)
Q Consensus 1063 ~~k~~~l~~~l~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~ 1139 (1493)
.....-|+.-+. ..+.+++|-+-|++.|+.|..+|.+.|+++..+|++...-+|..++..++.|.++|||.-+.+-+
T Consensus 429 ~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLRE 508 (663)
T COG0556 429 KGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (663)
T ss_pred CCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhc
Confidence 344455554443 34789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccEEEEecC-----CCChhHHHHHHhccCCCCCCCeEEEEecC
Q psy16310 1140 GLDIPGIEHVIHYHV-----PRTSEIYIHRSGRTARANNEGLTLVLIES 1183 (1493)
Q Consensus 1140 GiDip~v~~VI~~d~-----p~s~~~yiqr~GR~gR~g~~G~~i~l~~~ 1183 (1493)
|+|+|.|.+|..+|. .+|..++||-+|||+|. -.|.+|++.+.
T Consensus 509 GLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 509 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (663)
T ss_pred cCCCcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchh
Confidence 999999999998875 57899999999999995 47888887643
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-14 Score=179.82 Aligned_cols=348 Identities=17% Similarity=0.199 Sum_probs=211.8
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
+| -.|.++|.-.-- +|..| -|+.+.||+|||+++.+|++-..+.
T Consensus 79 lG-m~~ydVQliGg~-~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~-------------------------------- 122 (913)
T PRK13103 79 MG-MRHFDVQLIGGM-TLHEG--KIAEMRTGEGKTLVGTLAVYLNALS-------------------------------- 122 (913)
T ss_pred hC-CCcchhHHHhhh-HhccC--ccccccCCCCChHHHHHHHHHHHHc--------------------------------
Confidence 45 478889988763 55554 4889999999999999998865543
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHhC
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 944 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~~ 944 (1493)
|..+-|++||--||.|.++.+..+..++|++++++.++++......... +||++||..-| .|.|+.+
T Consensus 123 ----------G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~ 190 (913)
T PRK13103 123 ----------GKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDN 190 (913)
T ss_pred ----------CCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhcc
Confidence 3459999999999999999999999999999999999887766555444 79999999886 3444332
Q ss_pred cCc---cccccceeEEEecccchhccC-C---------------ChhHHHHHHHHhccc---------------CCCCCc
Q psy16310 945 HFH---LTELYKINYLVIDETDRMIES-G---------------HFPELKNILDRVTMT---------------ETSQPR 990 (1493)
Q Consensus 945 ~~~---~~~l~~l~~lVlDEah~ll~~-~---------------~~~~l~~il~~l~~~---------------~~~~~~ 990 (1493)
... -.....+.+.||||+|.++=+ . .+..+..++..|... --...+
T Consensus 191 ~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~ 270 (913)
T PRK13103 191 MAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTR 270 (913)
T ss_pred ceechhhhcccccceeEechhhheeccccCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCC
Confidence 110 011357899999999996421 1 123344444444110 000111
Q ss_pred eEEEEecc-------------c-c--------------cchHhHHhhhc--cCcC---------------cccccCCC--
Q psy16310 991 QTFVFSAT-------------L-T--------------HSLKNSLNLKK--GQSK---------------SKKVSKGD-- 1023 (1493)
Q Consensus 991 q~ll~SAT-------------l-~--------------~~~~~~~~~~~--~~~~---------------~~~~~~~~-- 1023 (1493)
++ .++-. + + +.+...+.... .... ...+..+.
T Consensus 271 ~v-~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrw 349 (913)
T PRK13103 271 QV-ELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRL 349 (913)
T ss_pred ee-eechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCcc
Confidence 11 11100 0 0 00000000000 0000 00000000
Q ss_pred -------------------------chhHHHH------------------hHhccCCCcEEeccccccccccceeeEEEe
Q psy16310 1024 -------------------------PSIKRLQ------------------DLLNIKSPKIVDLTEKIGITKTLTESKILC 1060 (1493)
Q Consensus 1024 -------------------------~~~~~l~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1493)
-.+..+. .+..+.+-.++.+.........-....+..
T Consensus 350 sdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~ 429 (913)
T PRK13103 350 SEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFNDLVYL 429 (913)
T ss_pred chHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCCeEEc
Confidence 0000000 001111111122211111111111112334
Q ss_pred cccchhhHHHHHHH---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC-CCCeEEeehh
Q psy16310 1061 KHDEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ-NNSILLATDV 1136 (1493)
Q Consensus 1061 ~~~~k~~~l~~~l~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g-~~~VLVaTdv 1136 (1493)
....|...++.-+. ..+.|+||-+.|+...+.|+..|...|++..++++.-. +++.-+-. ..| .-.|-|||++
T Consensus 430 t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~--~~EA~IIa-~AG~~GaVTIATNM 506 (913)
T PRK13103 430 TAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH--EKEAEIIA-QAGRPGALTIATNM 506 (913)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc--hhHHHHHH-cCCCCCcEEEeccC
Confidence 44556666655543 34789999999999999999999999999888887643 33322222 345 4579999999
Q ss_pred hhccccCC-------------------------------------CccEEEEecCCCChhHHHHHHhccCCCCCCCeEEE
Q psy16310 1137 AARGLDIP-------------------------------------GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV 1179 (1493)
Q Consensus 1137 ~~~GiDip-------------------------------------~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~ 1179 (1493)
|+||-||. +=-|||--..|.|..-=-|-.||+||-|.+|.+-.
T Consensus 507 AGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f 586 (913)
T PRK13103 507 AGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRF 586 (913)
T ss_pred CCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEE
Confidence 99999993 12378888888898888999999999999999999
Q ss_pred EecCCC
Q psy16310 1180 LIESDE 1185 (1493)
Q Consensus 1180 l~~~~e 1185 (1493)
|++-.|
T Consensus 587 ~lSlED 592 (913)
T PRK13103 587 YLSLED 592 (913)
T ss_pred EEEcCc
Confidence 987654
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-15 Score=182.80 Aligned_cols=401 Identities=14% Similarity=0.130 Sum_probs=223.8
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
|. .|+++|.-..- +|..| -|+.+.||+|||+++.+|+....+
T Consensus 76 g~-r~ydvQlig~l-~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL---------------------------------- 117 (764)
T PRK12326 76 GL-RPFDVQLLGAL-RLLAG--DVIEMATGEGKTLAGAIAAAGYAL---------------------------------- 117 (764)
T ss_pred CC-CcchHHHHHHH-HHhCC--CcccccCCCCHHHHHHHHHHHHHH----------------------------------
Confidence 55 69999998885 55554 366999999999999999875543
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHH-HHHHcCC
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW-EFIQLGH 328 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~-~~l~~~~ 328 (1493)
.|..|-|++||--||.|-++++..+...+|++++++.++++........ .+||+.+|..-|- +.|....
T Consensus 118 --------~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm 187 (764)
T PRK12326 118 --------QGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQL 187 (764)
T ss_pred --------cCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhh
Confidence 3456999999999999999999999999999999999998877655554 3699999998652 2332211
Q ss_pred c---cccccccccEEEEecCchhhhcC-C--------------hhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 329 F---HLTELYKINYLVIDETDRMIESG-H--------------FPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 329 ~---~~~~l~~i~~lViDEAh~ll~~~-~--------------~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
. .......+.+.||||+|.+|-+. . +..+..+...+... .++
T Consensus 188 ~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~------------~dy-------- 247 (764)
T PRK12326 188 VTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAELVRRLREG------------KDY-------- 247 (764)
T ss_pred ccChHhhcCCccceeeecchhhheeccccCceeeeCCCcchhHHHHHHHHHHhcCcC------------CcE--------
Confidence 0 01113457899999999976322 1 11122222221100 000
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCC--chhhhHHhh------hhcc------CCcccch--
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGD--PSIKRLQDL------LNIK------SPKIVDL-- 454 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~------~~~~~~~-- 454 (1493)
. .....+.+.++..=-..+..++.. .. ...... .....+... +... ...+.-+
T Consensus 248 --~---ide~~k~v~LTe~G~~~~e~~l~~----~~--ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe 316 (764)
T PRK12326 248 --E---IDDDGRNVHLTDKGARKVEKALGG----ID--LYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGKVHLINA 316 (764)
T ss_pred --E---EEcCCCeeEecHHHHHHHHHHcCC----cc--ccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEEC
Confidence 0 000111222221110111111100 00 000000 000000000 0000 0000000
Q ss_pred -hhhhcccccc----chhh------hhhccCC---cchhhHHHH----hcCCCcchhhHHHhhhhccCCccccccccccc
Q psy16310 455 -TEKIGITKTL----TESK------ILCKHDE---KDSYLYYFI----LQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGI 516 (1493)
Q Consensus 455 -~~~~~~~~~~----~~~~------~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1493)
++.......+ .+.. .+..... .-.+..+|- ...-..+.......+...+.-.+..+....+.
T Consensus 317 ~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~ 396 (764)
T PRK12326 317 SRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPN 396 (764)
T ss_pred CCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCCCCCc
Confidence 0000000000 0000 0000000 011111111 11111222333334444444444433333333
Q ss_pred cccccccccccccCchhhHHHHHHh---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC
Q psy16310 517 TKTLTESKILCKHDEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 593 (1493)
Q Consensus 517 ~~~~~~~~~~~~~~~k~~~l~~~l~---~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g 593 (1493)
........++.....|...+...+. ..+.|+||.|.|....+.|+.+|...+++...+++.-...+ ..++. ..|
T Consensus 397 ~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E-A~IIa--~AG 473 (764)
T PRK12326 397 IREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEE-ARIIA--EAG 473 (764)
T ss_pred eeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhH-HHHHH--hcC
Confidence 2222233444455566666665543 34679999999999999999999999999999988744333 22222 234
Q ss_pred -CCeEEEEechhhccCCCCC----------C-----cEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 594 -NNSILLATDVAARGLDIPG----------I-----EHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 594 -~~~VLVaTdv~~rGlDip~----------v-----~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
...|.|||++|+||-||.= | =|||....|.|..---|-.||+||-|.+|.+-.|++-+|
T Consensus 474 ~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 474 KYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred CCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 3479999999999999951 2 289999999999999999999999999999999987765
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-15 Score=187.92 Aligned_cols=418 Identities=16% Similarity=0.190 Sum_probs=231.5
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
|. .|+++|.-.-- +|.. --|+.+.||+|||+++.+|++-..+
T Consensus 80 Gm-~~ydVQliGg~-~Lh~--G~iaEM~TGEGKTLvA~l~a~l~al---------------------------------- 121 (913)
T PRK13103 80 GM-RHFDVQLIGGM-TLHE--GKIAEMRTGEGKTLVGTLAVYLNAL---------------------------------- 121 (913)
T ss_pred CC-CcchhHHHhhh-Hhcc--CccccccCCCCChHHHHHHHHHHHH----------------------------------
Confidence 53 68899987653 5544 4678999999999999999875443
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHcC-
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG- 327 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~~- 327 (1493)
.|..|-|++||--||.|-+.++..+...+|+++++++++++......... +||+++|..-| .|.|...
T Consensus 122 --------~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~ 191 (913)
T PRK13103 122 --------SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNM 191 (913)
T ss_pred --------cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccc
Confidence 34569999999999999999999999999999999999988776655554 79999999886 2333322
Q ss_pred ---CccccccccccEEEEecCchhhhc-CC---------------hhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 328 ---HFHLTELYKINYLVIDETDRMIES-GH---------------FPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 328 ---~~~~~~l~~i~~lViDEAh~ll~~-~~---------------~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
.... ....+.++||||+|.+|=+ .. +..+..+...+....... ........++
T Consensus 192 ~~~~~~~-vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~-~~~~~~~~~y------ 263 (913)
T PRK13103 192 AFSLDDK-FQRELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEV-EGQVTQEGHF------ 263 (913)
T ss_pred eechhhh-cccccceeEechhhheeccccCCceeecCCCccchHHHHHHHHHHHHHHhhhhcc-ccccCCCCCe------
Confidence 1111 1357899999999997622 11 112233333331100000 0000000000
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhH-------H--hhhhcc------CCcccc
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL-------Q--DLLNIK------SPKIVD 453 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~------~~~~~~ 453 (1493)
.. .... +.+.++-.-...+..++.. .+............++..+ . .++... ...+.-
T Consensus 264 ----~i--dek~-~~v~LTe~G~~~~e~~~~~-~~i~~~~~~ly~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~I 335 (913)
T PRK13103 264 ----TI--DEKT-RQVELNEAGHQFIEEMLTQ-AGLLAEGESLYSAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLL 335 (913)
T ss_pred ----EE--EcCC-CeeeechHHHHHHHHHhhh-CCCcccchhccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEE
Confidence 00 0111 1111111100111111100 0000000000000000000 0 000000 000000
Q ss_pred h---hhhhcccccc----chhh------hhhcc---CCcchhhHHHH----hcCCCcchhhHHHhhhhccCCcccccccc
Q psy16310 454 L---TEKIGITKTL----TESK------ILCKH---DEKDSYLYYFI----LQHPGRTLCEEIQDLLNIKSPKIVDLTEK 513 (1493)
Q Consensus 454 ~---~~~~~~~~~~----~~~~------~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (1493)
+ ++.......+ .+.. .+... ...-.+..+|- ...-..+.......+...+.-.+..+...
T Consensus 336 VDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTn 415 (913)
T PRK13103 336 IDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPN 415 (913)
T ss_pred EECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCC
Confidence 0 0000000000 0000 00000 00011111111 11122333344445666665555555444
Q ss_pred ccccccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHH
Q psy16310 514 IGITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRF 590 (1493)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~F 590 (1493)
...........++.....|...+..-+.. .+.|+||-+.|....+.|+.+|...++...++++.....+-. ++.
T Consensus 416 kP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~-IIa-- 492 (913)
T PRK13103 416 KPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAE-IIA-- 492 (913)
T ss_pred CCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHH-HHH--
Confidence 44333333344555566677776655543 467999999999999999999999999988888864433222 222
Q ss_pred hcC-CCeEEEEechhhccCCCC--------------------------------CCc-----EEEEecCCCChHHHHHHH
Q psy16310 591 RDQ-NNSILLATDVAARGLDIP--------------------------------GIE-----HVIHYHVPRTSEIYIHRS 632 (1493)
Q Consensus 591 r~g-~~~VLVaTdv~~rGlDip--------------------------------~v~-----~VI~yd~P~s~~~yiQR~ 632 (1493)
..| ...|.|||++|+||-||. +|. +||-...+.|..-=-|-.
T Consensus 493 ~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLr 572 (913)
T PRK13103 493 QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLR 572 (913)
T ss_pred cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhc
Confidence 344 457999999999999994 122 788889999999999999
Q ss_pred hccccCCCCCeEEEEecCCcch
Q psy16310 633 GRTARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 633 GRagR~g~~G~~i~l~~~~e~~ 654 (1493)
|||||-|.+|.+-.|++-+|--
T Consensus 573 GRaGRQGDPGsS~f~lSlED~L 594 (913)
T PRK13103 573 GRAGRQGDPGSSRFYLSLEDSL 594 (913)
T ss_pred cccccCCCCCceEEEEEcCcHH
Confidence 9999999999999999876633
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-15 Score=192.28 Aligned_cols=94 Identities=18% Similarity=0.222 Sum_probs=73.8
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcC-----CCccccccCCCHH---------------------HHHHHHHHHhc-CCCe
Q psy16310 544 PGRTLVFCNSISSVKRLTQLLTMLK-----CSPLPLHASMNQR---------------------QRLKNLDRFRD-QNNS 596 (1493)
Q Consensus 544 ~~~~IIF~~s~~~a~~L~~~L~~~~-----~~~~~lhg~~~~~---------------------~R~~vl~~Fr~-g~~~ 596 (1493)
+++++|||.++..|..+.+.|.... .....+++..... ....++++|++ +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 4899999999999999998886552 3334455433221 22478889976 6889
Q ss_pred EEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccC
Q psy16310 597 ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 638 (1493)
Q Consensus 597 VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~ 638 (1493)
|||.++.+-+|+|.|.+++++..-+-.+. .++|.+||+-|.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccc
Confidence 99999999999999999999887766654 589999999993
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >KOG0923|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.3e-15 Score=172.09 Aligned_cols=303 Identities=19% Similarity=0.183 Sum_probs=192.8
Q ss_pred HHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhcc
Q psy16310 794 IQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 873 (1493)
Q Consensus 794 iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (1493)
+-.+.+. ++...+-+||.|.||||||.- +|-+ |.... -.
T Consensus 269 ykdell~-av~e~QVLiI~GeTGSGKTTQ--iPQy--L~EaG------------------------------------yt 307 (902)
T KOG0923|consen 269 YKDELLK-AVKEHQVLIIVGETGSGKTTQ--IPQY--LYEAG------------------------------------YT 307 (902)
T ss_pred hHHHHHH-HHHhCcEEEEEcCCCCCcccc--ccHH--HHhcc------------------------------------cc
Confidence 3444453 566778899999999999974 5532 22110 12
Q ss_pred CCCeEEEEEcccHHHHHHHHHHH-HHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCcccccc
Q psy16310 874 RNKLYALILAPTRELAIQVQNHI-LDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952 (1493)
Q Consensus 874 ~~~~~~lil~PTreLa~Q~~~~~-~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~ 952 (1493)
..+.++-+--|.|--|.-++... ..++..+|..|+.-+.-. .......-|-++|-|+|+.-+... ..|.
T Consensus 308 k~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFE------dcTSekTvlKYMTDGmLlREfL~e----pdLa 377 (902)
T KOG0923|consen 308 KGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFE------DCTSEKTVLKYMTDGMLLREFLSE----PDLA 377 (902)
T ss_pred cCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEec------cccCcceeeeeecchhHHHHHhcc----cccc
Confidence 33444667779999888877655 335544444443322110 011123357799999998766433 3577
Q ss_pred ceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhH
Q psy16310 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDL 1032 (1493)
Q Consensus 953 ~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1032 (1493)
..+++|+||||.-- -+.+.+-.++..+.. ..+...+++.|||+.-.-.. .+
T Consensus 378 sYSViiiDEAHERT--L~TDILfgLvKDIar--~RpdLKllIsSAT~DAekFS---~f---------------------- 428 (902)
T KOG0923|consen 378 SYSVIIVDEAHERT--LHTDILFGLVKDIAR--FRPDLKLLISSATMDAEKFS---AF---------------------- 428 (902)
T ss_pred ceeEEEeehhhhhh--hhhhHHHHHHHHHHh--hCCcceEEeeccccCHHHHH---Hh----------------------
Confidence 89999999999621 112233333333321 13678899999999632211 11
Q ss_pred hccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH-----hCCCcEEEEecchhhHHHHHHHHHhc----C--
Q psy16310 1033 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL-----QHPGRTLVFCNSISSVKRLTQLLTML----K-- 1101 (1493)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-----~~~~~~IVF~~s~~~~~~l~~~L~~~----~-- 1101 (1493)
+.+..++.+.... -.+...|..++..+-....+.-+. +..|-+|||..-....+...+.|..+ |
T Consensus 429 --FDdapIF~iPGRR---yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGsk 503 (902)
T KOG0923|consen 429 --FDDAPIFRIPGRR---YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSK 503 (902)
T ss_pred --ccCCcEEeccCcc---cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccc
Confidence 1122222222111 111222233333333333332222 23578999999888777766666543 3
Q ss_pred ---CCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEec------------------CCCChhH
Q psy16310 1102 ---CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH------------------VPRTSEI 1160 (1493)
Q Consensus 1102 ---~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d------------------~p~s~~~ 1160 (1493)
+-+.++|++++...+.+|++---.|-.+|++||++++..|.|++|.+||.-+ .|.|..+
T Consensus 504 i~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAs 583 (902)
T KOG0923|consen 504 IRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKAS 583 (902)
T ss_pred cceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhh
Confidence 3467899999999999999988899999999999999999999999999522 2556777
Q ss_pred HHHHHhccCCCCCCCeEEEEec
Q psy16310 1161 YIHRSGRTARANNEGLTLVLIE 1182 (1493)
Q Consensus 1161 yiqr~GR~gR~g~~G~~i~l~~ 1182 (1493)
-.||+|||||.| +|.|+-+++
T Consensus 584 A~QRaGRAGRtg-PGKCfRLYt 604 (902)
T KOG0923|consen 584 ANQRAGRAGRTG-PGKCFRLYT 604 (902)
T ss_pred hhhhccccCCCC-CCceEEeec
Confidence 899999999998 999999997
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.4e-15 Score=177.04 Aligned_cols=349 Identities=16% Similarity=0.174 Sum_probs=214.5
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
+|. .|+++|.-+.- ++..| -|+.+.||.|||+++.+|++...+.
T Consensus 75 lg~-r~ydvQlig~l-~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~-------------------------------- 118 (764)
T PRK12326 75 LGL-RPFDVQLLGAL-RLLAG--DVIEMATGEGKTLAGAIAAAGYALQ-------------------------------- 118 (764)
T ss_pred cCC-CcchHHHHHHH-HHhCC--CcccccCCCCHHHHHHHHHHHHHHc--------------------------------
Confidence 354 68999999985 55555 2779999999999999998866543
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHH-HHHHhC
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW-EFIQLG 944 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~-~~l~~~ 944 (1493)
|..+-|++|+--||.|-++.+..+...+|++++++.++.+........ .+||+.+|..-|- |.|+.+
T Consensus 119 ----------G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDn 186 (764)
T PRK12326 119 ----------GRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQ 186 (764)
T ss_pred ----------CCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhh
Confidence 345999999999999999999999999999999999988876554444 4799999988753 333322
Q ss_pred cC---ccccccceeEEEecccchhccCC---------------ChhHHHHHHHHhcccC---------------------
Q psy16310 945 HF---HLTELYKINYLVIDETDRMIESG---------------HFPELKNILDRVTMTE--------------------- 985 (1493)
Q Consensus 945 ~~---~~~~l~~l~~lVlDEah~ll~~~---------------~~~~l~~il~~l~~~~--------------------- 985 (1493)
.. .......+.+.|+||+|.++-+. .+..+..++..|....
T Consensus 187 m~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~ 266 (764)
T PRK12326 187 LVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKV 266 (764)
T ss_pred hccChHhhcCCccceeeecchhhheeccccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHH
Confidence 11 00113457899999999863211 1111222222221000
Q ss_pred -----------C---------------------------CCCceEEEEe---------cccccchHhHHhhhccCcCccc
Q psy16310 986 -----------T---------------------------SQPRQTFVFS---------ATLTHSLKNSLNLKKGQSKSKK 1018 (1493)
Q Consensus 986 -----------~---------------------------~~~~q~ll~S---------ATl~~~~~~~~~~~~~~~~~~~ 1018 (1493)
. -.+-.++++- -.++..+.+.+..+-+......
T Consensus 267 e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e 346 (764)
T PRK12326 267 EKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTET 346 (764)
T ss_pred HHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCC
Confidence 0 0001122211 1122333344433222111000
Q ss_pred c-cCCCchhHHH------------------HhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH---hC
Q psy16310 1019 V-SKGDPSIKRL------------------QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL---QH 1076 (1493)
Q Consensus 1019 ~-~~~~~~~~~l------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~---~~ 1076 (1493)
. ....-....+ .....+.+-.++.+..............+......|...++..+. ..
T Consensus 347 ~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~ 426 (764)
T PRK12326 347 GEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHET 426 (764)
T ss_pred ceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHc
Confidence 0 0000000000 011111122222222221111111122333444556665555443 45
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC-CCCeEEeehhhhccccCC-----------
Q psy16310 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ-NNSILLATDVAARGLDIP----------- 1144 (1493)
Q Consensus 1077 ~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g-~~~VLVaTdv~~~GiDip----------- 1144 (1493)
+.|+||.|.|+...+.++..|...|++...+++.-...+ ..++. ..| .-.|-|||++++||.||.
T Consensus 427 GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~ 503 (764)
T PRK12326 427 GQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDR 503 (764)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHH
Confidence 789999999999999999999999999999988633222 22222 234 356999999999999995
Q ss_pred ----CccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCC
Q psy16310 1145 ----GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185 (1493)
Q Consensus 1145 ----~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e 1185 (1493)
+=-|||--..|.|..---|-.||+||-|.+|.+..|++-.|
T Consensus 504 V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 504 VAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred HHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 22379988899999999999999999999999999987554
|
|
| >KOG0920|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-15 Score=185.91 Aligned_cols=331 Identities=22% Similarity=0.265 Sum_probs=206.5
Q ss_pred HHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhc
Q psy16310 793 KIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 872 (1493)
Q Consensus 793 ~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (1493)
..+...+ .++...+.++++|.||+|||.-----++......
T Consensus 176 ~~r~~Il-~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~-------------------------------------- 216 (924)
T KOG0920|consen 176 KMRDTIL-DAIEENQVVVISGETGCGKTTQVPQFILDEAIES-------------------------------------- 216 (924)
T ss_pred HHHHHHH-HHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc--------------------------------------
Confidence 3445555 4788888999999999999986433455443221
Q ss_pred cCCCeEEEEEcccHHHHHHHHHHHHH-hhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccc
Q psy16310 873 TRNKLYALILAPTRELAIQVQNHILD-AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951 (1493)
Q Consensus 873 ~~~~~~~lil~PTreLa~Q~~~~~~~-~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l 951 (1493)
.....+++--|.|-=|.-+++.+.. .+...+-.|+.-++..+.. .....+++||-|.|+..+..+ ..+
T Consensus 217 -~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~~----~~l 285 (924)
T KOG0920|consen 217 -GAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQSD----PTL 285 (924)
T ss_pred -CCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeeccc------CCceeEEEecHHHHHHHhccC----ccc
Confidence 1344577777999888888877644 4444455555444432221 123579999999999998763 346
Q ss_pred cceeEEEecccchhc-cCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCc-----h
Q psy16310 952 YKINYLVIDETDRMI-ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDP-----S 1025 (1493)
Q Consensus 952 ~~l~~lVlDEah~ll-~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 1025 (1493)
..+..+|+||+|.=. +..| +.-+++.+.. ..+..+++++|||+..+.... .++......+..... .
T Consensus 286 ~~vthiivDEVHER~i~~Df---lLi~lk~lL~--~~p~LkvILMSAT~dae~fs~---YF~~~pvi~i~grtfpV~~~f 357 (924)
T KOG0920|consen 286 SGVTHIIVDEVHERSINTDF---LLILLKDLLP--RNPDLKVILMSATLDAELFSD---YFGGCPVITIPGRTFPVKEYF 357 (924)
T ss_pred ccCceeeeeeEEEccCCccc---HHHHHHHHhh--hCCCceEEEeeeecchHHHHH---HhCCCceEeecCCCcchHHHH
Confidence 789999999999632 2223 2222222221 137889999999998443322 222222222222211 1
Q ss_pred hHHHHhHhccCCCcEEecccccccccc-ceeeEEEecccch----hhHHHHHHH--hCCCcEEEEecchhhHHHHHHHHH
Q psy16310 1026 IKRLQDLLNIKSPKIVDLTEKIGITKT-LTESKILCKHDEK----DSYLYYFIL--QHPGRTLVFCNSISSVKRLTQLLT 1098 (1493)
Q Consensus 1026 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k----~~~l~~~l~--~~~~~~IVF~~s~~~~~~l~~~L~ 1098 (1493)
++++........ .+.......... +....+.+...+- ...++..+. ...|.+|||.+.......+...|.
T Consensus 358 LEDil~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~ 434 (924)
T KOG0920|consen 358 LEDILSKTGYVS---EDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLE 434 (924)
T ss_pred HHHHHHHhcccc---cccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhh
Confidence 222222221111 000000000000 0000011111111 122222222 236899999999999999999997
Q ss_pred hc-------CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEE--------ecCCCCh-----
Q psy16310 1099 ML-------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH--------YHVPRTS----- 1158 (1493)
Q Consensus 1099 ~~-------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~--------~d~p~s~----- 1158 (1493)
.. .+-+.++|+.|+..++..++..--.|..+|++||++++..|-|++|-+||. ||+-.+.
T Consensus 435 ~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~ 514 (924)
T KOG0920|consen 435 VNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLL 514 (924)
T ss_pred hccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhhe
Confidence 53 245678999999999999999999999999999999999999999999996 6655443
Q ss_pred -----hHHHHHHhccCCCCCCCeEEEEecCCC
Q psy16310 1159 -----EIYIHRSGRTARANNEGLTLVLIESDE 1185 (1493)
Q Consensus 1159 -----~~yiqr~GR~gR~g~~G~~i~l~~~~e 1185 (1493)
..-.||.|||||. ..|.||-+++...
T Consensus 515 ~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 515 SWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred eeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 3447999999997 5899999987643
|
|
| >KOG1123|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=171.30 Aligned_cols=331 Identities=15% Similarity=0.118 Sum_probs=206.7
Q ss_pred CCCcHHHHhhHHHhhccC--CcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 789 KTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~--~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
..++|+|..++...+-+| ++-|++.|.|+|||++-+-++.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-------------------------------------- 342 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-------------------------------------- 342 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee--------------------------------------
Confidence 568999999998766555 4779999999999998544332
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCc-
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH- 945 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~- 945 (1493)
.-+.+|||||.+-.-+.||...|..+..-.+-.++.++.+... ....++.|+|+|-.++...-.+.+
T Consensus 343 -------tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~e 410 (776)
T KOG1123|consen 343 -------TIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHE 410 (776)
T ss_pred -------eecccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHH
Confidence 1234699999999999999999998876666677777664322 223567899999776642211111
Q ss_pred ----CccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccC
Q psy16310 946 ----FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSK 1021 (1493)
Q Consensus 946 ----~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~ 1021 (1493)
..+..-..++++|+||+|.+...-|...+.-+-.. .-++++||+-++......+... .....
T Consensus 411 aek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aH----------cKLGLTATLvREDdKI~DLNFL--IGPKl-- 476 (776)
T KOG1123|consen 411 AEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAH----------CKLGLTATLVREDDKITDLNFL--IGPKL-- 476 (776)
T ss_pred HHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHH----------hhccceeEEeecccccccccee--ecchh--
Confidence 00011235789999999988776554444333322 3578999997654322111100 00000
Q ss_pred CCchhHHHHhHhccCCCcEEecc--------ccccccccceeeEEEecccchhhHHHHHH---HhCCCcEEEEecchhhH
Q psy16310 1022 GDPSIKRLQDLLNIKSPKIVDLT--------EKIGITKTLTESKILCKHDEKDSYLYYFI---LQHPGRTLVFCNSISSV 1090 (1493)
Q Consensus 1022 ~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~k~~~l~~~l---~~~~~~~IVF~~s~~~~ 1090 (1493)
...++..+...-++..-....+. ........-......+.+..|....-.++ .+++.++|||..+.-..
T Consensus 477 YEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfAL 556 (776)
T KOG1123|consen 477 YEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFAL 556 (776)
T ss_pred hhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHH
Confidence 01112222221111111111110 00001111111223344555655444333 45688999999988776
Q ss_pred HHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhc-CCCCeEEeehhhhccccCCCccEEEEecCC-CChhHHHHHHhcc
Q psy16310 1091 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVP-RTSEIYIHRSGRT 1168 (1493)
Q Consensus 1091 ~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~-g~~~VLVaTdv~~~GiDip~v~~VI~~d~p-~s~~~yiqr~GR~ 1168 (1493)
...|-.|. --.++|..+|.+|.+|++.|+. ..++-++-+-|....+|+|..+++|+.... .|..+=.||.||.
T Consensus 557 k~YAikl~-----KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRI 631 (776)
T KOG1123|consen 557 KEYAIKLG-----KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRI 631 (776)
T ss_pred HHHHHHcC-----CceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHH
Confidence 66666552 2358899999999999999996 467888888999999999999999987655 4678889999999
Q ss_pred CCCCC------CCeEEEEecCCCHHH
Q psy16310 1169 ARANN------EGLTLVLIESDEIPL 1188 (1493)
Q Consensus 1169 gR~g~------~G~~i~l~~~~e~~~ 1188 (1493)
-|+-+ ....+.+|+.+-...
T Consensus 632 LRAKk~~de~fnafFYSLVS~DTqEM 657 (776)
T KOG1123|consen 632 LRAKKRNDEEFNAFFYSLVSKDTQEM 657 (776)
T ss_pred HHHhhcCccccceeeeeeeecchHHH
Confidence 99743 234556666554443
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=186.77 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=76.4
Q ss_pred hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCC--CcEEEEe
Q psy16310 542 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG--IEHVIHY 619 (1493)
Q Consensus 542 ~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~--v~~VI~y 619 (1493)
..+|+++|+++|+...+.++..|......+ ...|.-. .+.+++++|+++...||++|..+.+|+|+|+ ...||..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 457899999999999999999987654433 3333211 2456899999999999999999999999984 5556665
Q ss_pred cCC----CC--------------------------hHHHHHHHhccccCCC-CCeEEEEecCC
Q psy16310 620 HVP----RT--------------------------SEIYIHRSGRTARANN-EGLTVVLIESD 651 (1493)
Q Consensus 620 d~P----~s--------------------------~~~yiQR~GRagR~g~-~G~~i~l~~~~ 651 (1493)
.+| .+ +..+.|-+||.=|... .|. ++++++.
T Consensus 722 kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gv-v~ilD~R 783 (820)
T PRK07246 722 RLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSA-VLILDRR 783 (820)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEE-EEEECCc
Confidence 555 12 2334699999989765 354 4444443
|
|
| >KOG0924|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-15 Score=171.38 Aligned_cols=304 Identities=18% Similarity=0.183 Sum_probs=186.7
Q ss_pred HHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhc
Q psy16310 793 KIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 872 (1493)
Q Consensus 793 ~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (1493)
..+.+.+. .+..++-+++++.||||||.- +| +.|+...
T Consensus 359 ~~R~~ll~-~ir~n~vvvivgETGSGKTTQ--l~--QyL~edG------------------------------------- 396 (1042)
T KOG0924|consen 359 ACRDQLLS-VIRENQVVVIVGETGSGKTTQ--LA--QYLYEDG------------------------------------- 396 (1042)
T ss_pred HHHHHHHH-HHhhCcEEEEEecCCCCchhh--hH--HHHHhcc-------------------------------------
Confidence 34556664 677778899999999999975 22 2232210
Q ss_pred cCCCeEEEEEcccHHHHHHHHHHHHH-hhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccc
Q psy16310 873 TRNKLYALILAPTRELAIQVQNHILD-AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951 (1493)
Q Consensus 873 ~~~~~~~lil~PTreLa~Q~~~~~~~-~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l 951 (1493)
-.....+-+--|.|.-|.-+++.+.. ++..+|-.|+.-+.-.+ .......|-..|-|.|+.-.-. -..|
T Consensus 397 Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEd------vT~~~T~IkymTDGiLLrEsL~----d~~L 466 (1042)
T KOG0924|consen 397 YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFED------VTSEDTKIKYMTDGILLRESLK----DRDL 466 (1042)
T ss_pred cccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeee------cCCCceeEEEeccchHHHHHhh----hhhh
Confidence 01122345556999988888776654 44444444443322111 1112346889999998754321 1346
Q ss_pred cceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHh
Q psy16310 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQD 1031 (1493)
Q Consensus 952 ~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1031 (1493)
.+.++||+||||.-.- -.+.+..+++..... ..+..++..||||... .+. .+
T Consensus 467 ~kYSviImDEAHERsl--NtDilfGllk~~lar--RrdlKliVtSATm~a~--kf~-nf--------------------- 518 (1042)
T KOG0924|consen 467 DKYSVIIMDEAHERSL--NTDILFGLLKKVLAR--RRDLKLIVTSATMDAQ--KFS-NF--------------------- 518 (1042)
T ss_pred hheeEEEechhhhccc--chHHHHHHHHHHHHh--hccceEEEeeccccHH--HHH-HH---------------------
Confidence 6889999999996211 112233333333211 2467899999999622 111 11
Q ss_pred HhccCCCcEEeccccccccccceeeEEEecccchhhHHHHH-----HHhCCCcEEEEecchhhHHHHHHHHH----hc--
Q psy16310 1032 LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF-----ILQHPGRTLVFCNSISSVKRLTQLLT----ML-- 1100 (1493)
Q Consensus 1032 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~-----l~~~~~~~IVF~~s~~~~~~l~~~L~----~~-- 1100 (1493)
++ +-..+.+..... .+.-.+...+.++-....+.. +...+|-+|||......++..+..+. ++
T Consensus 519 -Fg--n~p~f~IpGRTy---PV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~ 592 (1042)
T KOG0924|consen 519 -FG--NCPQFTIPGRTY---PVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDS 592 (1042)
T ss_pred -hC--CCceeeecCCcc---ceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhc
Confidence 11 111111111110 011111111222211111111 11235889999998776665555443 32
Q ss_pred ----CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEec------------------CCCCh
Q psy16310 1101 ----KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH------------------VPRTS 1158 (1493)
Q Consensus 1101 ----~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d------------------~p~s~ 1158 (1493)
++.+.++++.|++.-+.+++..-..|-.+++|||++++..+.||++.+||..+ .|.|.
T Consensus 593 ~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~ 672 (1042)
T KOG0924|consen 593 APTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQ 672 (1042)
T ss_pred CCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechh
Confidence 56788999999999999999888889999999999999999999999999633 25667
Q ss_pred hHHHHHHhccCCCCCCCeEEEEecC
Q psy16310 1159 EIYIHRSGRTARANNEGLTLVLIES 1183 (1493)
Q Consensus 1159 ~~yiqr~GR~gR~g~~G~~i~l~~~ 1183 (1493)
..-.||.|||||.| +|.|+-+++.
T Consensus 673 AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 673 ANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred ccchhhccccCCCC-Ccceeeehhh
Confidence 77889999999987 9999999976
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-14 Score=164.16 Aligned_cols=107 Identities=22% Similarity=0.331 Sum_probs=99.4
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEec--
Q psy16310 543 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH-- 620 (1493)
Q Consensus 543 ~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd-- 620 (1493)
.+.++||-+-|++.|+.|..+|...|+++..+|+++..-+|..+++..|.|.+.|||.-+.+-+|||+|.|.+|..+|
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDAD 524 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 524 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecC
Confidence 357999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ---CCCChHHHHHHHhccccCCCCCeEEEEecC
Q psy16310 621 ---VPRTSEIYIHRSGRTARANNEGLTVVLIES 650 (1493)
Q Consensus 621 ---~P~s~~~yiQR~GRagR~g~~G~~i~l~~~ 650 (1493)
+.+|..+.||-+|||||.- .|.++++...
T Consensus 525 KeGFLRse~SLIQtIGRAARN~-~GkvIlYAD~ 556 (663)
T COG0556 525 KEGFLRSERSLIQTIGRAARNV-NGKVILYADK 556 (663)
T ss_pred ccccccccchHHHHHHHHhhcc-CCeEEEEchh
Confidence 4589999999999999964 7998877644
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.7e-15 Score=161.91 Aligned_cols=174 Identities=33% Similarity=0.482 Sum_probs=135.9
Q ss_pred HCCCCCCcHHHHhhHHHhhccC-CcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhh
Q psy16310 785 QKGFKTPTKIQSMVMPSALLAR-KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863 (1493)
Q Consensus 785 ~~g~~~pt~iQ~~~i~~~l~~~-~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1493)
..++..|+++|.++++.++ .. +.+++++|||||||.++..+++..+...
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~-~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~----------------------------- 52 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALL-SGLRDVILAAPTGSGKTLAALLPALEALKRG----------------------------- 52 (201)
T ss_pred ccCCCCCCHHHHHHHHHHH-cCCCcEEEECCCCCchhHHHHHHHHHHhccc-----------------------------
Confidence 4578899999999998655 55 8999999999999999999988776321
Q ss_pred hcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCC-cEEEECcHHHHHHHH
Q psy16310 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP-HILVATPGRLWEFIQ 942 (1493)
Q Consensus 864 ~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~-~IlV~TP~rl~~~l~ 942 (1493)
....++|++||+.++.|+...+..++...........++.........+..+. +|+++|++.+.+.+.
T Consensus 53 -----------~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~ 121 (201)
T smart00487 53 -----------KGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLE 121 (201)
T ss_pred -----------CCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHH
Confidence 13469999999999999999999887665545555666666455555555555 999999999999887
Q ss_pred hCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 943 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 943 ~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
... .....++++|+||||.+....+...+..++..+ +...+++++|||+++......
T Consensus 122 ~~~---~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~-----~~~~~~v~~saT~~~~~~~~~ 178 (201)
T smart00487 122 NDL---LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL-----PKNVQLLLLSATPPEEIENLL 178 (201)
T ss_pred cCC---cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC-----CccceEEEEecCCchhHHHHH
Confidence 654 234578899999999988766777777777766 356889999999986665544
|
|
| >KOG4150|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-15 Score=169.60 Aligned_cols=336 Identities=12% Similarity=0.054 Sum_probs=220.0
Q ss_pred HHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhh
Q psy16310 784 YQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863 (1493)
Q Consensus 784 ~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1493)
..+--+....+|..+|. .+..|+++++.-.|.+||.++|.+..+..++.
T Consensus 280 ~~~~~E~~~~~~~~~~~-~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~------------------------------ 328 (1034)
T KOG4150|consen 280 NKNTGESGIAISLELLK-FASEGRADGGNEARQAGKGTCPTSGSRKFQTL------------------------------ 328 (1034)
T ss_pred hcccccchhhhhHHHHh-hhhhcccccccchhhcCCccCcccchhhhhhc------------------------------
Confidence 33444566789999997 67789999999999999999999887765533
Q ss_pred hcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC---CcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHH
Q psy16310 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT---PVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEF 940 (1493)
Q Consensus 864 ~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~---~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~ 940 (1493)
.+....+++.||.+|+....+.+.-..... .--++-.+.|.+........+.+..++++.|......
T Consensus 329 ----------~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~ 398 (1034)
T KOG4150|consen 329 ----------CHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISA 398 (1034)
T ss_pred ----------CcccceecchhHHHHhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHH
Confidence 222347889999999876544332111110 0112223445555555555667889999999987665
Q ss_pred HHhCcCcc-ccccceeEEEecccchhccC--CC-hhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCc
Q psy16310 941 IQLGHFHL-TELYKINYLVIDETDRMIES--GH-FPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 1016 (1493)
Q Consensus 941 l~~~~~~~-~~l~~l~~lVlDEah~ll~~--~~-~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~ 1016 (1493)
+-...... ..+-.+.+++.||+|.++.. .+ ...++.+++.+.-...+.+.|++-.|||+-..+.-...
T Consensus 399 ~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~-------- 470 (1034)
T KOG4150|consen 399 ALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSE-------- 470 (1034)
T ss_pred HhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHH--------
Confidence 53332221 12335678999999975432 11 22344444433333345678999999999755432211
Q ss_pred ccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEec---------ccch---hhHHHHHHHhCCCcEEEEe
Q psy16310 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK---------HDEK---DSYLYYFILQHPGRTLVFC 1084 (1493)
Q Consensus 1017 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~k---~~~l~~~l~~~~~~~IVF~ 1084 (1493)
..++.....+... ..+..-....+.-+ ...+ ...++.-+..++-++|-||
T Consensus 471 ---------------~~~~~E~~Li~~D---GSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC 532 (1034)
T KOG4150|consen 471 ---------------LANLSELELVTID---GSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFC 532 (1034)
T ss_pred ---------------hcCCcceEEEEec---CCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEec
Confidence 1111111111111 11111111111110 1111 1223333445678999999
Q ss_pred cchhhHHHHHHHHHhc----C----CCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCC
Q psy16310 1085 NSISSVKRLTQLLTML----K----CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR 1156 (1493)
Q Consensus 1085 ~s~~~~~~l~~~L~~~----~----~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~ 1156 (1493)
.+++.|+.+....+.. + -.+..|.|+....+|.++....-.|+..-+|||++++-||||.+.+.|++.++|.
T Consensus 533 ~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~ 612 (1034)
T KOG4150|consen 533 PSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPG 612 (1034)
T ss_pred cHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCch
Confidence 9999998876655543 2 1345689999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1157 s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
|+..+.|..||+||.++...++.++...-+
T Consensus 613 S~aNl~QQ~GRAGRRNk~SLavyva~~~PV 642 (1034)
T KOG4150|consen 613 SIANLWQQAGRAGRRNKPSLAVYVAFLGPV 642 (1034)
T ss_pred hHHHHHHHhccccccCCCceEEEEEeccch
Confidence 999999999999999999988887765443
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-15 Score=179.58 Aligned_cols=341 Identities=17% Similarity=0.200 Sum_probs=187.9
Q ss_pred CCChHHHHhhhhhhh---c-cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhh
Q psy16310 172 KTPTKIQSMVMPSAL---L-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 247 (1493)
Q Consensus 172 ~~pt~iQ~~~i~~~l---~-~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1493)
..|+.+|..||.... . +.+-+++++.||+|||..+. .++.+|.+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi-aii~rL~r~------------------------------ 212 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI-AIIDRLIKS------------------------------ 212 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH-HHHHHHHhc------------------------------
Confidence 358999999986433 2 34459999999999999854 455566542
Q ss_pred cchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcC
Q psy16310 248 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~ 327 (1493)
..-.++|||+.++.|+.|.+..|..+... +-.+..+.+-.... .++|.|+|-+.+...+...
T Consensus 213 ---------~~~KRVLFLaDR~~Lv~QA~~af~~~~P~-~~~~n~i~~~~~~~--------s~~i~lsTyqt~~~~~~~~ 274 (875)
T COG4096 213 ---------GWVKRVLFLADRNALVDQAYGAFEDFLPF-GTKMNKIEDKKGDT--------SSEIYLSTYQTMTGRIEQK 274 (875)
T ss_pred ---------chhheeeEEechHHHHHHHHHHHHHhCCC-ccceeeeecccCCc--------ceeEEEeehHHHHhhhhcc
Confidence 23457999999999999999998887533 33333333322111 3589999999998877654
Q ss_pred Cccccccc--cccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEE
Q psy16310 328 HFHLTELY--KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFV 405 (1493)
Q Consensus 328 ~~~~~~l~--~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il 405 (1493)
......+. .+++|||||||+=. ......|+.++.. -+++
T Consensus 275 ~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~I~dYFdA-----------------------------------~~~g 315 (875)
T COG4096 275 EDEYRRFGPGFFDLIVIDEAHRGI----YSEWSSILDYFDA-----------------------------------ATQG 315 (875)
T ss_pred ccccccCCCCceeEEEechhhhhH----HhhhHHHHHHHHH-----------------------------------HHHh
Confidence 22222233 48999999999643 3334577766632 1334
Q ss_pred Eeeccchhhhhhh-hhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHH
Q psy16310 406 FSATLTHSLKNSL-NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 484 (1493)
Q Consensus 406 ~SATl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1493)
++||+...+...- ....+. ..........+.+-+... +..+.+.-.+.. .-+.+
T Consensus 316 LTATP~~~~d~~T~~~F~g~-----Pt~~YsleeAV~DGfLvp-y~vi~i~~~~~~-----------------~G~~~-- 370 (875)
T COG4096 316 LTATPKETIDRSTYGFFNGE-----PTYAYSLEEAVEDGFLVP-YKVIRIDTDFDL-----------------DGWKP-- 370 (875)
T ss_pred hccCcccccccccccccCCC-----cceeecHHHHhhccccCC-CCceEEeeeccc-----------------cCcCc--
Confidence 4788765332110 000000 000000000011100000 000000000000 00000
Q ss_pred hcCCCcchhhHHHhhh--hccCCccccccccccccccccccccccccCchhhHHHHHHhh--C---CCcEEEEecchhhH
Q psy16310 485 LQHPGRTLCEEIQDLL--NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ--H---PGRTLVFCNSISSV 557 (1493)
Q Consensus 485 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~---~~~~IIF~~s~~~a 557 (1493)
.. ...........+ ........++... ..+....+.-...+.+.+.. . .+++||||.+..+|
T Consensus 371 ~~--~serek~~g~~i~~dd~~~~~~d~dr~---------~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHA 439 (875)
T COG4096 371 DA--GSEREKLQGEAIDEDDQNFEARDFDRT---------LVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHA 439 (875)
T ss_pred Cc--cchhhhhhccccCcccccccccccchh---------ccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHH
Confidence 00 000000000000 0000000000000 00111112223344455544 1 36899999999999
Q ss_pred HHHHHHHHhcC-----CCccccccCCCHHHHHHHHHHHhc--CCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHH
Q psy16310 558 KRLTQLLTMLK-----CSPLPLHASMNQRQRLKNLDRFRD--QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630 (1493)
Q Consensus 558 ~~L~~~L~~~~-----~~~~~lhg~~~~~~R~~vl~~Fr~--g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQ 630 (1493)
+++...|.... --+..+.|+-.+.+ ..+..|.. .--+|.|+.+++..|+|+|.|.++|.+-.-.|..-|.|
T Consensus 440 e~i~~~~~~~ype~~~~~a~~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~Q 517 (875)
T COG4096 440 ERIREALVNEYPEYNGRYAMKITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQ 517 (875)
T ss_pred HHHHHHHHHhCccccCceEEEEeccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHH
Confidence 99999997652 33445666644433 33455544 33478999999999999999999999999999999999
Q ss_pred HHhccccC
Q psy16310 631 RSGRTARA 638 (1493)
Q Consensus 631 R~GRagR~ 638 (1493)
++||+-|.
T Consensus 518 MvGRGTRl 525 (875)
T COG4096 518 MVGRGTRL 525 (875)
T ss_pred HhcCcccc
Confidence 99997784
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-13 Score=168.95 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=81.8
Q ss_pred hHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC----CCCeEEeehhhhcccc
Q psy16310 1067 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ----NNSILLATDVAARGLD 1142 (1493)
Q Consensus 1067 ~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g----~~~VLVaTdv~~~GiD 1142 (1493)
..+..++....|+++|.+.|....+.++..|...---...+.|+.+ .|...+++|+.. ...||++|+.+.+|||
T Consensus 460 ~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvD 537 (636)
T TIGR03117 460 LSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGID 537 (636)
T ss_pred HHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccc
Confidence 3344555667899999999999999999999663223344556543 346688999874 7899999999999999
Q ss_pred C----------CCccEEEEecCCCC-------------------------hhHHHHHHhccCCCCCC--CeEEEEecCC
Q psy16310 1143 I----------PGIEHVIHYHVPRT-------------------------SEIYIHRSGRTARANNE--GLTLVLIESD 1184 (1493)
Q Consensus 1143 i----------p~v~~VI~~d~p~s-------------------------~~~yiqr~GR~gR~g~~--G~~i~l~~~~ 1184 (1493)
+ ..+.+||...+|-. ...+.|-+||.-|.... --.++++++.
T Consensus 538 v~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 538 LTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred cCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 9 24888998777721 12256888888887543 2234444444
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=159.87 Aligned_cols=174 Identities=33% Similarity=0.488 Sum_probs=133.5
Q ss_pred HCCCCCChHHHHhhhhhhhccC-CcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhh
Q psy16310 168 QKGFKTPTKIQSMVMPSALLAR-KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 246 (1493)
Q Consensus 168 ~~g~~~pt~iQ~~~i~~~l~~~-~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1493)
..++..|+++|.++++.++ .. ++++++++||||||.+++.+++..+...
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~-~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~----------------------------- 52 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALL-SGLRDVILAAPTGSGKTLAALLPALEALKRG----------------------------- 52 (201)
T ss_pred ccCCCCCCHHHHHHHHHHH-cCCCcEEEECCCCCchhHHHHHHHHHHhccc-----------------------------
Confidence 3567889999999998544 55 8999999999999999999988776321
Q ss_pred hcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCC-CEEEeCcHHHHHHHH
Q psy16310 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP-HILVATPGRLWEFIQ 325 (1493)
Q Consensus 247 ~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~-~IiV~TP~~L~~~l~ 325 (1493)
...+++|++||+.++.|+...+..+............++......+..+..+. +|+++|++.+.+.+.
T Consensus 53 -----------~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~ 121 (201)
T smart00487 53 -----------KGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLE 121 (201)
T ss_pred -----------CCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHH
Confidence 12469999999999999999998877655545555666666555566666666 999999999999887
Q ss_pred cCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEE
Q psy16310 326 LGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFV 405 (1493)
Q Consensus 326 ~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il 405 (1493)
.... ...+++++|+||||++....+...+..++..+ ....++++
T Consensus 122 ~~~~---~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~v~ 165 (201)
T smart00487 122 NDLL---ELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL---------------------------------PKNVQLLL 165 (201)
T ss_pred cCCc---CHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC---------------------------------CccceEEE
Confidence 6542 23478899999999997656777777776654 23468999
Q ss_pred Eeeccchhhhhhh
Q psy16310 406 FSATLTHSLKNSL 418 (1493)
Q Consensus 406 ~SATl~~~~~~~~ 418 (1493)
+|||++.......
T Consensus 166 ~saT~~~~~~~~~ 178 (201)
T smart00487 166 LSATPPEEIENLL 178 (201)
T ss_pred EecCCchhHHHHH
Confidence 9999987665543
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-13 Score=180.90 Aligned_cols=124 Identities=21% Similarity=0.277 Sum_probs=88.4
Q ss_pred HHhCCCcEEEEecchhhHHHHHHHHHhcCC--CccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCC--ccE
Q psy16310 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKC--SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG--IEH 1148 (1493)
Q Consensus 1073 l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~--~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~--v~~ 1148 (1493)
+...+|++|||++|....+.++..|..... ....+.-+++...|..++++|+.++..||++|..+.+|||+|+ +.+
T Consensus 748 ~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~ 827 (928)
T PRK08074 748 AKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSC 827 (928)
T ss_pred HHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEE
Confidence 345678999999999999999999975432 1222322444456889999999999999999999999999997 478
Q ss_pred EEEecCCC----C--------------------------hhHHHHHHhccCCCCCCCeEEEEecCC--CHHHHHHHHHhc
Q psy16310 1149 VIHYHVPR----T--------------------------SEIYIHRSGRTARANNEGLTLVLIESD--EIPLYIKMFNSL 1196 (1493)
Q Consensus 1149 VI~~d~p~----s--------------------------~~~yiqr~GR~gR~g~~G~~i~l~~~~--e~~~~~~~~~~~ 1196 (1493)
||...+|- + ...+.|-+||.-|....--+++++++. ...+-+.+.+++
T Consensus 828 viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sL 907 (928)
T PRK08074 828 LVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESL 907 (928)
T ss_pred EEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhC
Confidence 88866652 2 122478899999986543345555554 233445565654
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-14 Score=174.40 Aligned_cols=397 Identities=17% Similarity=0.183 Sum_probs=224.2
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHH-HHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL-TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
|. +|+++|.-.-- +|..| -|+.+.||-|||+++.||+. +.+
T Consensus 76 G~-r~ydVQliGgl-vLh~G--~IAEMkTGEGKTLvAtLpayLnAL---------------------------------- 117 (925)
T PRK12903 76 GK-RPYDVQIIGGI-ILDLG--SVAEMKTGEGKTITSIAPVYLNAL---------------------------------- 117 (925)
T ss_pred CC-CcCchHHHHHH-HHhcC--CeeeecCCCCccHHHHHHHHHHHh----------------------------------
Confidence 55 79999988774 56555 47899999999999999985 333
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~~ 327 (1493)
.|..|-|++..--||..=..++..+..++|++|+++..++......... .+||..+|..-| .+.|...
T Consensus 118 ---------~GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDn 186 (925)
T PRK12903 118 ---------TGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDN 186 (925)
T ss_pred ---------cCCceEEEecchhhhhhhHHHHHHHHHHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhc
Confidence 2345788888889999888888888888999999999887776655544 379999999865 2344322
Q ss_pred Cc---cccccccccEEEEecCchhhhc-CChh---------------hHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 328 HF---HLTELYKINYLVIDETDRMIES-GHFP---------------ELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 328 ~~---~~~~l~~i~~lViDEAh~ll~~-~~~~---------------~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
.. .-.....+.+.||||+|.+|=. ...+ .+..+...+...
T Consensus 187 m~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~--------------------- 245 (925)
T PRK12903 187 MVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLKED--------------------- 245 (925)
T ss_pred ccccHHHhcCcccceeeeccchheeecccCCcccccCCCccchHHHHHHHHHHHhcccc---------------------
Confidence 10 0011346789999999997622 2111 111111111000
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCch----hhhHHhhh------hcc------CCccc
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPS----IKRLQDLL------NIK------SPKIV 452 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------~~~------~~~~~ 452 (1493)
.+... .. ...+.++..=-..+..++.+. ...+.. ...+...+ ... ...+.
T Consensus 246 --dy~iD--ek-~k~v~LTe~G~~~~E~~l~i~---------nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~ 311 (925)
T PRK12903 246 --DYKID--EE-TKAISLTEKGIKKANKFFKLK---------NLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKIE 311 (925)
T ss_pred --ceEEe--cc-cceEEECHhHHHHHHHHcCCC---------cccChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEE
Confidence 00000 11 112222211111111111100 000000 00000000 000 00000
Q ss_pred ch---hhhhccccccc----hh------hhhhcc---CCcchhhHHHH----hcCCCcchhhHHHhhhhccCCccccccc
Q psy16310 453 DL---TEKIGITKTLT----ES------KILCKH---DEKDSYLYYFI----LQHPGRTLCEEIQDLLNIKSPKIVDLTE 512 (1493)
Q Consensus 453 ~~---~~~~~~~~~~~----~~------~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1493)
-+ ++.......+. +. ...... ...-.+..+|- ...-..+.......+...+.-.+.....
T Consensus 312 IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPT 391 (925)
T PRK12903 312 LVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPT 391 (925)
T ss_pred EEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEECCC
Confidence 00 00000000000 00 000000 00011111111 1111222333334455555554444444
Q ss_pred cccccccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHH
Q psy16310 513 KIGITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDR 589 (1493)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~ 589 (1493)
..+.........++.....|...+...+.. .+.|+||.|.|....+.|+.+|...|+...++++.-. ++..-+-.
T Consensus 392 nkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa 469 (925)
T PRK12903 392 NKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA 469 (925)
T ss_pred CCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH
Confidence 433333333334556666777776665543 3679999999999999999999999999888888633 33322222
Q ss_pred HhcC-CCeEEEEechhhccCCCCCCc--------EEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcc
Q psy16310 590 FRDQ-NNSILLATDVAARGLDIPGIE--------HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653 (1493)
Q Consensus 590 Fr~g-~~~VLVaTdv~~rGlDip~v~--------~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~ 653 (1493)
..| ...|.|||++|+||-||.--. |||....|.|..---|-.|||||.|.+|.+-.+++-+|-
T Consensus 470 -~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 470 -KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred -hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchH
Confidence 345 468999999999999995322 999999999998889999999999999999888877653
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-15 Score=138.51 Aligned_cols=78 Identities=33% Similarity=0.595 Sum_probs=75.5
Q ss_pred HHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCC
Q psy16310 1095 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172 (1493)
Q Consensus 1095 ~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g 1172 (1493)
+.|+..++.+..+||+|++.+|..+++.|+++...|||||+++++|+|+|++++||++++|.+...|+|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999986
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >KOG4150|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.7e-15 Score=167.29 Aligned_cols=353 Identities=12% Similarity=0.053 Sum_probs=220.6
Q ss_pred HHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHH
Q psy16310 164 RALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELE 243 (1493)
Q Consensus 164 ~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1493)
..+..+.-.....+|.+++. .+..|+++++.-.|.+||.++|.+.....+..-
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~-~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~-------------------------- 329 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLK-FASEGRADGGNEARQAGKGTCPTSGSRKFQTLC-------------------------- 329 (1034)
T ss_pred HHHhcccccchhhhhHHHHh-hhhhcccccccchhhcCCccCcccchhhhhhcC--------------------------
Confidence 33444556677899999997 677899999999999999999988876555331
Q ss_pred HhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcC---CCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH
Q psy16310 244 EESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK---YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320 (1493)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~---~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L 320 (1493)
....-+++.||++|++.+.+.+.-... ...-.+...+.+.+..........+.+++++.|...
T Consensus 330 --------------~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~ 395 (1034)
T KOG4150|consen 330 --------------HATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEA 395 (1034)
T ss_pred --------------cccceecchhHHHHhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHH
Confidence 112268888999998865443311110 011123334445555555566677889999999988
Q ss_pred HHHHHcCCccc-cccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCC
Q psy16310 321 WEFIQLGHFHL-TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQ 399 (1493)
Q Consensus 321 ~~~l~~~~~~~-~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1493)
...+...+..+ .++....++++||+|..+ .-+..++...+.++-.. ...-..+.
T Consensus 396 ~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~~~~~~~~~R~L~~L------------------------~~~F~~~~ 450 (1034)
T KOG4150|consen 396 ISAALAKSLCYNVPVFEELCKDTNSCALYL-FPTKALAQDQLRALSDL------------------------IKGFEASI 450 (1034)
T ss_pred HHHHhhhccccccHHHHHHHhcccceeeee-cchhhHHHHHHHHHHHH------------------------HHHHHhhc
Confidence 76554333322 234467789999999653 33444443333333111 00111245
Q ss_pred CceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchh
Q psy16310 400 PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 479 (1493)
Q Consensus 400 ~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1493)
..|++-.|||+...+...- ++.++..-..+... +.+.......++
T Consensus 451 ~~~~~~~~~~~K~~~~~~~-----------------------~~~~~~E~~Li~~D---GSPs~~K~~V~W--------- 495 (1034)
T KOG4150|consen 451 NMGVYDGDTPYKDRTRLRS-----------------------ELANLSELELVTID---GSPSSEKLFVLW--------- 495 (1034)
T ss_pred CcceEeCCCCcCCHHHHHH-----------------------HhcCCcceEEEEec---CCCCccceEEEe---------
Confidence 6788888999865443221 11111111100000 000000000000
Q ss_pred hHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCch---hhHHHHHHhhCCCcEEEEecchhh
Q psy16310 480 LYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK---DSYLYYFILQHPGRTLVFCNSISS 556 (1493)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k---~~~l~~~l~~~~~~~IIF~~s~~~ 556 (1493)
.|.. +.. .....+.+ ...++..+..++-++|-||.+|.-
T Consensus 496 -------NP~~--------------------------~P~-----~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~ 537 (1034)
T KOG4150|consen 496 -------NPSA--------------------------PPT-----SKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKL 537 (1034)
T ss_pred -------CCCC--------------------------CCc-----chhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHH
Confidence 0000 000 00000000 112233344566799999999999
Q ss_pred HHHHHHHHHhc----CC----CccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHH
Q psy16310 557 VKRLTQLLTML----KC----SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628 (1493)
Q Consensus 557 a~~L~~~L~~~----~~----~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~y 628 (1493)
|+.+....+.. +. .+..+.||-+..+|+++....--|+..-+|||+.++-||||.+.+.|++.++|.|...+
T Consensus 538 CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl 617 (1034)
T KOG4150|consen 538 CELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANL 617 (1034)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHH
Confidence 98776544432 21 24568899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCeEEEEecCCcchh
Q psy16310 629 IHRSGRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 629 iQR~GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
.|..|||||..++..++.++...-+..
T Consensus 618 ~QQ~GRAGRRNk~SLavyva~~~PVDQ 644 (1034)
T KOG4150|consen 618 WQQAGRAGRRNKPSLAVYVAFLGPVDQ 644 (1034)
T ss_pred HHHhccccccCCCceEEEEEeccchhh
Confidence 999999999999998888877665543
|
|
| >KOG0926|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-14 Score=168.97 Aligned_cols=303 Identities=24% Similarity=0.294 Sum_probs=182.9
Q ss_pred HhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhh-ccCCCeEE
Q psy16310 801 SALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK-KTRNKLYA 879 (1493)
Q Consensus 801 ~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 879 (1493)
.++..+--+|+||.||||||.- +|-+ |+... +.. ....+..+
T Consensus 266 EaIn~n~vvIIcGeTGsGKTTQ--vPQF--LYEAG---------------------------------f~s~~~~~~gmI 308 (1172)
T KOG0926|consen 266 EAINENPVVIICGETGSGKTTQ--VPQF--LYEAG---------------------------------FASEQSSSPGMI 308 (1172)
T ss_pred HHhhcCCeEEEecCCCCCcccc--chHH--HHHcc---------------------------------cCCccCCCCCee
Confidence 4666666789999999999974 5533 22110 000 11223356
Q ss_pred EEEcccHHHHHHHHHHHHH-hhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEE
Q psy16310 880 LILAPTRELAIQVQNHILD-AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 958 (1493)
Q Consensus 880 lil~PTreLa~Q~~~~~~~-~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lV 958 (1493)
=|--|.|--|.-+++.... ++. ++-.|...+.-.. .......|.++|-|.|+.-|.... .|...+.||
T Consensus 309 GITqPRRVAaiamAkRVa~EL~~-~~~eVsYqIRfd~------ti~e~T~IkFMTDGVLLrEi~~Df----lL~kYSvII 377 (1172)
T KOG0926|consen 309 GITQPRRVAAIAMAKRVAFELGV-LGSEVSYQIRFDG------TIGEDTSIKFMTDGVLLREIENDF----LLTKYSVII 377 (1172)
T ss_pred eecCchHHHHHHHHHHHHHHhcc-CccceeEEEEecc------ccCCCceeEEecchHHHHHHHHhH----hhhhceeEE
Confidence 6677988877776655433 433 4444544332100 112234799999999998887644 366889999
Q ss_pred ecccchhccCCChhHHHHHHHHhcc--------cCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHH
Q psy16310 959 IDETDRMIESGHFPELKNILDRVTM--------TETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQ 1030 (1493)
Q Consensus 959 lDEah~ll~~~~~~~l~~il~~l~~--------~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1030 (1493)
|||||.-.- ..+.+-.++.++.. .....+...+++|||+--+. +...+
T Consensus 378 lDEAHERSv--nTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsD--Ftenk-------------------- 433 (1172)
T KOG0926|consen 378 LDEAHERSV--NTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSD--FTENK-------------------- 433 (1172)
T ss_pred echhhhccc--hHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecc--cccCc--------------------
Confidence 999996211 12223333333321 12234678999999995211 11000
Q ss_pred hHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHH----H--H--hCCCcEEEEecchhhHHHHHHHHHhc--
Q psy16310 1031 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF----I--L--QHPGRTLVFCNSISSVKRLTQLLTML-- 1100 (1493)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~----l--~--~~~~~~IVF~~s~~~~~~l~~~L~~~-- 1100 (1493)
..+.+..| ++.+..... +-. +.........++... + . ..+|.+|||+.....+..|+..|+..
T Consensus 434 ~LFpi~pP-likVdARQf-PVs-----IHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p 506 (1172)
T KOG0926|consen 434 RLFPIPPP-LIKVDARQF-PVS-----IHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFP 506 (1172)
T ss_pred eecCCCCc-eeeeecccC-ceE-----EEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCc
Confidence 00111112 232221110 000 111111111222211 1 1 12788999999999999999888432
Q ss_pred --------------------------------------------------------------------------------
Q psy16310 1101 -------------------------------------------------------------------------------- 1100 (1493)
Q Consensus 1101 -------------------------------------------------------------------------------- 1100 (1493)
T Consensus 507 ~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~ 586 (1172)
T KOG0926|consen 507 ESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDE 586 (1172)
T ss_pred cccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccch
Confidence
Q ss_pred -----------------CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEE--------ecCC
Q psy16310 1101 -----------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH--------YHVP 1155 (1493)
Q Consensus 1101 -----------------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~--------~d~p 1155 (1493)
..-|.++++-++...+.++++.--.|..-++|||+|++..+.||+|.+||. ||--
T Consensus 587 ~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~ 666 (1172)
T KOG0926|consen 587 SEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSK 666 (1172)
T ss_pred hhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccc
Confidence 011445777888888888888888899999999999999999999999996 4444
Q ss_pred CChhHH----------HHHHhccCCCCCCCeEEEEecC
Q psy16310 1156 RTSEIY----------IHRSGRTARANNEGLTLVLIES 1183 (1493)
Q Consensus 1156 ~s~~~y----------iqr~GR~gR~g~~G~~i~l~~~ 1183 (1493)
.+...| -||+|||||.| .|+||-+++.
T Consensus 667 TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 667 TGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred cCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 444433 59999999987 8999999864
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-15 Score=138.05 Aligned_cols=78 Identities=33% Similarity=0.595 Sum_probs=75.5
Q ss_pred HHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCC
Q psy16310 562 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 639 (1493)
Q Consensus 562 ~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g 639 (1493)
++|+..++.+..+||++++.+|..+++.|.+|...|||||+++++|+|+|++++||+|++|.|+..|+|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999986
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.8e-15 Score=149.93 Aligned_cols=117 Identities=35% Similarity=0.602 Sum_probs=108.3
Q ss_pred chhhHHHHHHHhC---CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhcc
Q psy16310 1064 EKDSYLYYFILQH---PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140 (1493)
Q Consensus 1064 ~k~~~l~~~l~~~---~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~G 1140 (1493)
.+...+..++... .+++||||++...++.++..|...+..+..+||+++..+|..+++.|..+...||++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 5666677666654 5799999999999999999999888999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEE
Q psy16310 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180 (1493)
Q Consensus 1141 iDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l 1180 (1493)
+|+|++++||++++|.+...|+|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887764
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.3e-15 Score=149.22 Aligned_cols=117 Identities=35% Similarity=0.603 Sum_probs=108.3
Q ss_pred chhhHHHHHHhhC---CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhcc
Q psy16310 531 EKDSYLYYFILQH---PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607 (1493)
Q Consensus 531 ~k~~~l~~~l~~~---~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rG 607 (1493)
.|...+..++... .+++||||++...++.+...|...+..+..+||+++..+|..+++.|.+|...+|++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 5666666666654 5799999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEE
Q psy16310 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVL 647 (1493)
Q Consensus 608 lDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l 647 (1493)
+|+|++++||.+++|.+...|+|++||++|.|..|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998988764
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-12 Score=160.78 Aligned_cols=349 Identities=15% Similarity=0.164 Sum_probs=213.9
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
+|. .|+++|.-.-- +|..| -|+.+.||=|||+++.+|+.-..+.
T Consensus 75 lG~-r~ydVQliGgl-vLh~G--~IAEMkTGEGKTLvAtLpayLnAL~-------------------------------- 118 (925)
T PRK12903 75 LGK-RPYDVQIIGGI-ILDLG--SVAEMKTGEGKTITSIAPVYLNALT-------------------------------- 118 (925)
T ss_pred hCC-CcCchHHHHHH-HHhcC--CeeeecCCCCccHHHHHHHHHHHhc--------------------------------
Confidence 354 78899998874 66665 3789999999999999998644332
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHH-HHHHhC
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW-EFIQLG 944 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~-~~l~~~ 944 (1493)
|..|-|++..--||.-=++.+..+..++|+.|+++..++........ ..+||+.||..-|- |.|+.+
T Consensus 119 ----------GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~rr~a--Y~~DItYgTn~E~gFDYLRDn 186 (925)
T PRK12903 119 ----------GKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREA--YACDITYSVHSELGFDYLRDN 186 (925)
T ss_pred ----------CCceEEEecchhhhhhhHHHHHHHHHHhCCceeeeCCCCChHHHHHh--ccCCCeeecCcccchhhhhhc
Confidence 23477888888999988889999988999999999988776654443 35799999988763 445432
Q ss_pred cC---ccccccceeEEEecccchhccC-C---------------ChhHHHHHHHHhcccC--------------------
Q psy16310 945 HF---HLTELYKINYLVIDETDRMIES-G---------------HFPELKNILDRVTMTE-------------------- 985 (1493)
Q Consensus 945 ~~---~~~~l~~l~~lVlDEah~ll~~-~---------------~~~~l~~il~~l~~~~-------------------- 985 (1493)
.. .-.-...+.+.|+||+|.++=+ . .+..+..++..|....
T Consensus 187 m~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~ 266 (925)
T PRK12903 187 MVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKA 266 (925)
T ss_pred ccccHHHhcCcccceeeeccchheeecccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHH
Confidence 11 0011346789999999985311 1 1112222222221000
Q ss_pred -------------------------------------CCCCceEEEEec---------ccccchHhHHhhhccCcCccc-
Q psy16310 986 -------------------------------------TSQPRQTFVFSA---------TLTHSLKNSLNLKKGQSKSKK- 1018 (1493)
Q Consensus 986 -------------------------------------~~~~~q~ll~SA---------Tl~~~~~~~~~~~~~~~~~~~- 1018 (1493)
.-.+-.++++-. .++..+.+.+..+-+......
T Consensus 267 E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~ 346 (925)
T PRK12903 267 NKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPET 346 (925)
T ss_pred HHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCc
Confidence 000112333321 122223333322222111000
Q ss_pred ccCCCchhHHH------------------HhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH---hCC
Q psy16310 1019 VSKGDPSIKRL------------------QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL---QHP 1077 (1493)
Q Consensus 1019 ~~~~~~~~~~l------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~---~~~ 1077 (1493)
.....-.+..+ ..+..+.+-.++.+.........-....+......|...++..+. ..+
T Consensus 347 ~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~g 426 (925)
T PRK12903 347 KTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKG 426 (925)
T ss_pred eeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcC
Confidence 00000000000 111122222233332222111111112344455566666665544 347
Q ss_pred CcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC-CCCeEEeehhhhccccCCCcc--------E
Q psy16310 1078 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ-NNSILLATDVAARGLDIPGIE--------H 1148 (1493)
Q Consensus 1078 ~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g-~~~VLVaTdv~~~GiDip~v~--------~ 1148 (1493)
.|+||.|.|+...+.|+..|...|++..++++. +.+++.-+=. ..| .-.|.|||++++||.||.=-. |
T Consensus 427 qPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk--~~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLh 503 (925)
T PRK12903 427 QPILIGTAQVEDSETLHELLLEANIPHTVLNAK--QNAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLY 503 (925)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHCCCCceeeccc--chhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcE
Confidence 799999999999999999999999998888886 3344333222 445 457999999999999995222 8
Q ss_pred EEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCC
Q psy16310 1149 VIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185 (1493)
Q Consensus 1149 VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e 1185 (1493)
||....|.|..---|-.||+||.|.+|.+-.|++-.|
T Consensus 504 VIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 504 VLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred EEecccCchHHHHHHHhcccccCCCCCcceEEEecch
Confidence 9999999999888899999999999999998887554
|
|
| >KOG0925|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.8e-14 Score=158.91 Aligned_cols=330 Identities=20% Similarity=0.216 Sum_probs=191.1
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
+..|...+.++.-.+.|++..-- |---|++-+-..+..++-+++++.||||||..---.++......
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~L-Pvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~------------ 90 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRREL-PVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH------------ 90 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcC-chHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh------------
Confidence 45677788888887777665332 33345555556788889999999999999985111111111110
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHH-HHHhcCCCCeEEEEEEcCCCHHHHHHHhcC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNH-ILDAGKYTPVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~-~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
. ..+...-|.|.-|.++... ..++ ++..+.-+|..-..+.. ...
T Consensus 91 ---------------------------~--~~v~CTQprrvaamsva~RVadEM----Dv~lG~EVGysIrfEdC--~~~ 135 (699)
T KOG0925|consen 91 ---------------------------L--TGVACTQPRRVAAMSVAQRVADEM----DVTLGEEVGYSIRFEDC--TSP 135 (699)
T ss_pred ---------------------------c--cceeecCchHHHHHHHHHHHHHHh----ccccchhcccccccccc--CCh
Confidence 0 2366777888888887544 3333 33333333321110000 000
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
+.-.-.||.|.|+....+++. |.++.+||+||||.-. --.+.+..+++.+...
T Consensus 136 ~T~Lky~tDgmLlrEams~p~----l~~y~viiLDeahERt--lATDiLmGllk~v~~~--------------------- 188 (699)
T KOG0925|consen 136 NTLLKYCTDGMLLREAMSDPL----LGRYGVIILDEAHERT--LATDILMGLLKEVVRN--------------------- 188 (699)
T ss_pred hHHHHHhcchHHHHHHhhCcc----cccccEEEechhhhhh--HHHHHHHHHHHHHHhh---------------------
Confidence 001336899998887665543 5689999999999641 1233455555544222
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
.+...+|++|||+-..-.. ..+. +..+..+.+...
T Consensus 189 ---------rpdLk~vvmSatl~a~Kfq-------------------------~yf~--n~Pll~vpg~~P--------- 223 (699)
T KOG0925|consen 189 ---------RPDLKLVVMSATLDAEKFQ-------------------------RYFG--NAPLLAVPGTHP--------- 223 (699)
T ss_pred ---------CCCceEEEeecccchHHHH-------------------------HHhC--CCCeeecCCCCc---------
Confidence 2457899999998532111 1110 011111110000
Q ss_pred hhhccCCcchhhHHHHhcCCC-cchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcE
Q psy16310 469 ILCKHDEKDSYLYYFILQHPG-RTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 547 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 547 (1493)
..++| ...+. ..+...++.++.+ ...+.+|.+
T Consensus 224 ---------vEi~Y--t~e~erDylEaairtV~qi------------------------------------h~~ee~GDi 256 (699)
T KOG0925|consen 224 ---------VEIFY--TPEPERDYLEAAIRTVLQI------------------------------------HMCEEPGDI 256 (699)
T ss_pred ---------eEEEe--cCCCChhHHHHHHHHHHHH------------------------------------HhccCCCCE
Confidence 00000 00000 0111111111111 112347899
Q ss_pred EEEecchhhHHHHHHHHHh----c-----CCCccccccCCCHHHHHHHHHHHhc---C--CCeEEEEechhhccCCCCCC
Q psy16310 548 LVFCNSISSVKRLTQLLTM----L-----KCSPLPLHASMNQRQRLKNLDRFRD---Q--NNSILLATDVAARGLDIPGI 613 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~----~-----~~~~~~lhg~~~~~~R~~vl~~Fr~---g--~~~VLVaTdv~~rGlDip~v 613 (1493)
+||..+.++.+..++.+.. + .+.+.++| +.++.++++.-.. | ..+|+|+|++++..+.|++|
T Consensus 257 lvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgi 332 (699)
T KOG0925|consen 257 LVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGI 332 (699)
T ss_pred EEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccE
Confidence 9999999998888877753 2 24556677 5555555554432 2 25899999999999999999
Q ss_pred cEEEEec------------------CCCChHHHHHHHhccccCCCCCeEEEEecCC
Q psy16310 614 EHVIHYH------------------VPRTSEIYIHRSGRTARANNEGLTVVLIESD 651 (1493)
Q Consensus 614 ~~VI~yd------------------~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~ 651 (1493)
-+||.-+ .|.|..+-.||.||+||. ++|.|+.||+.+
T Consensus 333 v~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 333 VFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 9999633 256777889999999997 499999999863
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-12 Score=160.89 Aligned_cols=132 Identities=21% Similarity=0.220 Sum_probs=99.3
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
.|. .|+++|.-+.- ++.. .-|+.+.||.|||+++.+|+.-..+
T Consensus 73 lG~-r~ydvQlig~l-~L~~--G~IaEm~TGEGKTL~a~l~ayl~aL--------------------------------- 115 (870)
T CHL00122 73 LGL-RHFDVQLIGGL-VLND--GKIAEMKTGEGKTLVATLPAYLNAL--------------------------------- 115 (870)
T ss_pred hCC-CCCchHhhhhH-hhcC--CccccccCCCCchHHHHHHHHHHHh---------------------------------
Confidence 465 48899988873 5544 5689999999999999999864332
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHH-HHHHhC
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW-EFIQLG 944 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~-~~l~~~ 944 (1493)
.|..|-|++++..||.+-++.+..+...+|+.|+++.++++....... ..+||+.+|..-|- |.|+..
T Consensus 116 ---------~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDn 184 (870)
T CHL00122 116 ---------TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDN 184 (870)
T ss_pred ---------cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhc
Confidence 233589999999999999999999999999999999998887664443 34699999997653 444332
Q ss_pred cC-c--cccccceeEEEecccchh
Q psy16310 945 HF-H--LTELYKINYLVIDETDRM 965 (1493)
Q Consensus 945 ~~-~--~~~l~~l~~lVlDEah~l 965 (1493)
.. . -.....+.+.|+||+|.+
T Consensus 185 m~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 185 MALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred cCcChHHhhccccceeeeecchhh
Confidence 11 0 012345789999999985
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-13 Score=168.84 Aligned_cols=132 Identities=21% Similarity=0.244 Sum_probs=99.7
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
.|. +|+++|.-..- ++. +.-|+.+.||.|||+++.+|+.-..+
T Consensus 73 lG~-r~ydvQlig~l-~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL--------------------------------- 115 (870)
T CHL00122 73 LGL-RHFDVQLIGGL-VLN--DGKIAEMKTGEGKTLVATLPAYLNAL--------------------------------- 115 (870)
T ss_pred hCC-CCCchHhhhhH-hhc--CCccccccCCCCchHHHHHHHHHHHh---------------------------------
Confidence 366 58999987763 553 46888999999999999999852221
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHH-HHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW-EFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~-~~l~~~ 327 (1493)
.|..|-|++++..||.+-++++..+...+|++|+++.++++......... +||+.+|..-|- +.|...
T Consensus 116 ---------~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~aY~--~DItYgTn~e~gFDyLRDn 184 (870)
T CHL00122 116 ---------TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKNYL--KDITYVTNSELGFDYLRDN 184 (870)
T ss_pred ---------cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHHhcC--CCCEecCCccccccchhhc
Confidence 23459999999999999999999999999999999999888766555444 699999997542 333221
Q ss_pred ----CccccccccccEEEEecCchhh
Q psy16310 328 ----HFHLTELYKINYLVIDETDRMI 349 (1493)
Q Consensus 328 ----~~~~~~l~~i~~lViDEAh~ll 349 (1493)
.... ....+.+.||||||.+|
T Consensus 185 m~~~~~~~-v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 185 MALSLSDV-VQRPFNYCIIDEVDSIL 209 (870)
T ss_pred cCcChHHh-hccccceeeeecchhhe
Confidence 1111 23457899999999986
|
|
| >KOG0953|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=8e-14 Score=159.34 Aligned_cols=254 Identities=17% Similarity=0.203 Sum_probs=158.6
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEE
Q psy16310 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYL 957 (1493)
Q Consensus 878 ~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~l 957 (1493)
..++--|.|-||..+++.+.+.+ +.+.+++|......... ...+..+-||-+++. .-..+++.
T Consensus 217 sGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~~~--~~~a~hvScTVEM~s-----------v~~~yeVA 279 (700)
T KOG0953|consen 217 SGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVLDN--GNPAQHVSCTVEMVS-----------VNTPYEVA 279 (700)
T ss_pred cceecchHHHHHHHHHHHhhhcC----CCccccccceeeecCCC--CCcccceEEEEEEee-----------cCCceEEE
Confidence 47899999999999999998875 77888887432211110 123567778877641 11246899
Q ss_pred EecccchhccCCChhHH-HHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccC
Q psy16310 958 VIDETDRMIESGHFPEL-KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 1036 (1493)
Q Consensus 958 VlDEah~ll~~~~~~~l-~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1036 (1493)
||||.+.|-+...+-.+ +.++.... ....+.+=-| .+.-+...+...
T Consensus 280 ViDEIQmm~Dp~RGwAWTrALLGl~A-----dEiHLCGeps---------------------------vldlV~~i~k~T 327 (700)
T KOG0953|consen 280 VIDEIQMMRDPSRGWAWTRALLGLAA-----DEIHLCGEPS---------------------------VLDLVRKILKMT 327 (700)
T ss_pred EehhHHhhcCcccchHHHHHHHhhhh-----hhhhccCCch---------------------------HHHHHHHHHhhc
Confidence 99999988776553333 33333221 1111111001 111111112211
Q ss_pred CCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCC-ccccccCCCHHH
Q psy16310 1037 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS-PLPLHASMNQRQ 1115 (1493)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~m~~~~ 1115 (1493)
... +.+.. ...+.. .......+-.+-.-.+|-+|| |-|++....+...+...|.. +++++|+++++.
T Consensus 328 Gd~-vev~~----YeRl~p------L~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeT 395 (700)
T KOG0953|consen 328 GDD-VEVRE----YERLSP------LVVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPET 395 (700)
T ss_pred CCe-eEEEe----ecccCc------ceehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCCCCch
Confidence 111 11100 000000 000001111111223666765 66888899999999888766 999999999999
Q ss_pred HHHHHHHHhc--CCCCeEEeehhhhccccCCCccEEEEecCC---------CChhHHHHHHhccCCCCC---CCeEEEEe
Q psy16310 1116 RLKNLDRFRD--QNNSILLATDVAARGLDIPGIEHVIHYHVP---------RTSEIYIHRSGRTARANN---EGLTLVLI 1181 (1493)
Q Consensus 1116 R~~~~~~F~~--g~~~VLVaTdv~~~GiDip~v~~VI~~d~p---------~s~~~yiqr~GR~gR~g~---~G~~i~l~ 1181 (1493)
|.+....|.+ ++++||||||++++|+|+ +++.||.|++- -+..+..|-+|||||.|. .|.+.+|
T Consensus 396 r~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl- 473 (700)
T KOG0953|consen 396 RLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTL- 473 (700)
T ss_pred hHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEe-
Confidence 9999999987 999999999999999999 99999998764 456788999999999974 4665555
Q ss_pred cCCCHHHHHHHHH
Q psy16310 1182 ESDEIPLYIKMFN 1194 (1493)
Q Consensus 1182 ~~~e~~~~~~~~~ 1194 (1493)
...+...+.++++
T Consensus 474 ~~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 474 HSEDLKLLKRILK 486 (700)
T ss_pred eHhhHHHHHHHHh
Confidence 3445555555544
|
|
| >KOG0385|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.4e-13 Score=155.75 Aligned_cols=392 Identities=19% Similarity=0.201 Sum_probs=226.0
Q ss_pred CChHHHHhhhhhhh---ccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 173 TPTKIQSMVMPSAL---LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l---~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
.+++||.+-+.-.+ .+|-|.|..-.-|-|||+.. +.++.++...
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~-------------------------------- 213 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGR-------------------------------- 213 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHh--------------------------------
Confidence 58999998875222 35778999999999999963 2333333211
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHH--Hh-cCCCCEEEeCcHHHHHHHHc
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR--IL-NKCPHILVATPGRLWEFIQL 326 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~--~l-~~~~~IiV~TP~~L~~~l~~ 326 (1493)
.+.+|| -||+||.-.|.. +.+.|.++. .++++.+++|+........ .+ ....+|+|+|.++.+..-
T Consensus 214 -----~~~~GP-fLVi~P~StL~N-W~~Ef~rf~--P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk-- 282 (971)
T KOG0385|consen 214 -----KGIPGP-FLVIAPKSTLDN-WMNEFKRFT--PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK-- 282 (971)
T ss_pred -----cCCCCC-eEEEeeHhhHHH-HHHHHHHhC--CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--
Confidence 112333 599999988854 566677765 4689999999864433322 11 235799999999876531
Q ss_pred CCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEE
Q psy16310 327 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVF 406 (1493)
Q Consensus 327 ~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~ 406 (1493)
..+.. + .+++|||||||++-. -...+..+++.+... -.+++
T Consensus 283 ~~lk~--~-~W~ylvIDEaHRiKN--~~s~L~~~lr~f~~~----------------------------------nrLLl 323 (971)
T KOG0385|consen 283 SFLKK--F-NWRYLVIDEAHRIKN--EKSKLSKILREFKTD----------------------------------NRLLL 323 (971)
T ss_pred HHHhc--C-CceEEEechhhhhcc--hhhHHHHHHHHhccc----------------------------------ceeEe
Confidence 11111 1 578999999999843 334455666655322 23455
Q ss_pred eecc-chhhhhhhhhhccccccccc-------------cCCC-chhhhHHhhhhccCCcccch-hhhh-ccccccchhhh
Q psy16310 407 SATL-THSLKNSLNLKKGQSKSKKV-------------SKGD-PSIKRLQDLLNIKSPKIVDL-TEKI-GITKTLTESKI 469 (1493)
Q Consensus 407 SATl-~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~ 469 (1493)
+.|+ -+++.++..+.-........ ..++ ..+..+...+ .|.+..- ...+ ...+.-.+..+
T Consensus 324 TGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL---~pFlLRR~K~dVe~sLppKkE~~i 400 (971)
T KOG0385|consen 324 TGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVL---RPFLLRRIKSDVEKSLPPKKELII 400 (971)
T ss_pred eCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhh---hHHHHHHHHHhHhhcCCCcceeeE
Confidence 5554 33333332221110000000 0000 0111111110 0000000 0000 00001111112
Q ss_pred hhccCCcchhhHHHHhcCCC-----------cchhhHHHhhh-hccCCccccccccccccccccccccccccCchhhHHH
Q psy16310 470 LCKHDEKDSYLYYFILQHPG-----------RTLCEEIQDLL-NIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 537 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 537 (1493)
.+.....+..+|..+....- ..+...+.++. ...+|.+.+-... ........+....+.|..+|-
T Consensus 401 yvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~eP---g~pyttdehLv~nSGKm~vLD 477 (971)
T KOG0385|consen 401 YVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEP---GPPYTTDEHLVTNSGKMLVLD 477 (971)
T ss_pred eccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCC---CCCCCcchHHHhcCcceehHH
Confidence 22222222222222211110 00111111111 1233443332111 122333344555666766665
Q ss_pred HHH---hhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC---CCeEEEEechhhccCCCC
Q psy16310 538 YFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ---NNSILLATDVAARGLDIP 611 (1493)
Q Consensus 538 ~~l---~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g---~~~VLVaTdv~~rGlDip 611 (1493)
.+| ...++++|||..-.....-|-.++...++..+.+.|.++-.+|...++.|... ..-.|++|-+.+-|||+-
T Consensus 478 kLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~ 557 (971)
T KOG0385|consen 478 KLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLT 557 (971)
T ss_pred HHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccc
Confidence 554 55688999999988888888888888899999999999999999999999653 345789999999999999
Q ss_pred CCcEEEEecCCCChHHHHHHHhccccCCCCC--eEEEEecCCcc
Q psy16310 612 GIEHVIHYHVPRTSEIYIHRSGRTARANNEG--LTVVLIESDEI 653 (1493)
Q Consensus 612 ~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G--~~i~l~~~~e~ 653 (1493)
..+.||.||--+||+.-+|..-||-|.|... .+|.|++..-+
T Consensus 558 aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentV 601 (971)
T KOG0385|consen 558 AADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTV 601 (971)
T ss_pred cccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchH
Confidence 9999999999999999999999999999764 55666766543
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-14 Score=181.55 Aligned_cols=125 Identities=22% Similarity=0.268 Sum_probs=110.4
Q ss_pred hhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccC
Q psy16310 532 KDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 608 (1493)
Q Consensus 532 k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGl 608 (1493)
+...+...+.. .+.++||||+++..+++|+..|...|+.+..+||++++.+|..++..|+.|.+.|||||+++++|+
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 44455555543 367899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecC-----CCChHHHHHHHhccccCCCCCeEEEEecCCcchhhh
Q psy16310 609 DIPGIEHVIHYHV-----PRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKT 657 (1493)
Q Consensus 609 Dip~v~~VI~yd~-----P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~ 657 (1493)
|+|++++||++|. |.+..+|+||+|||||. ..|.|++|++..+..+.+
T Consensus 511 dlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~ 563 (652)
T PRK05298 511 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQK 563 (652)
T ss_pred cccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHH
Confidence 9999999999885 78999999999999996 689999999865444333
|
|
| >KOG0387|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.1e-12 Score=151.45 Aligned_cols=126 Identities=23% Similarity=0.302 Sum_probs=107.5
Q ss_pred ccCchhhHHHHHHh---hCCCcEEEEecchhhHHHHHHHHH-hcCCCccccccCCCHHHHHHHHHHHhcCCC--eEEEEe
Q psy16310 528 KHDEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLT-MLKCSPLPLHASMNQRQRLKNLDRFRDQNN--SILLAT 601 (1493)
Q Consensus 528 ~~~~k~~~l~~~l~---~~~~~~IIF~~s~~~a~~L~~~L~-~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~--~VLVaT 601 (1493)
..+.|..++..++. ..+.++|+|..++.....|-..|. ..++.++.+.|..+...|..++++|.++.. -.|++|
T Consensus 527 k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTT 606 (923)
T KOG0387|consen 527 KRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTT 606 (923)
T ss_pred hhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEe
Confidence 34567777766664 357799999999999999999998 679999999999999999999999997764 368899
Q ss_pred chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCC--eEEEEecCCcc
Q psy16310 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG--LTVVLIESDEI 653 (1493)
Q Consensus 602 dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G--~~i~l~~~~e~ 653 (1493)
-|.+-|+++-+.+.||.||+-+||..-.|..-||=|.|..- .+|.|++..-+
T Consensus 607 rvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTI 660 (923)
T KOG0387|consen 607 RVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTI 660 (923)
T ss_pred cccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcH
Confidence 99999999999999999999999999999999999999764 34556665543
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-11 Score=153.44 Aligned_cols=132 Identities=21% Similarity=0.219 Sum_probs=100.4
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
.|. .|.++|.-.-- ++..| -|+.+.||-|||+++.+|+.-..+.
T Consensus 82 lG~-r~ydVQliGgl-~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~-------------------------------- 125 (939)
T PRK12902 82 LGM-RHFDVQLIGGM-VLHEG--QIAEMKTGEGKTLVATLPSYLNALT-------------------------------- 125 (939)
T ss_pred hCC-CcchhHHHhhh-hhcCC--ceeeecCCCChhHHHHHHHHHHhhc--------------------------------
Confidence 354 67889988873 56554 4889999999999999998754433
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-----HHH
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-----WEF 940 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-----~~~ 940 (1493)
|..|-||++.--||..=++.+..+..++|+.|+++.+++....... ...+||+.||+..| .|.
T Consensus 126 ----------GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDYLRDn 193 (939)
T PRK12902 126 ----------GKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKK--NYACDITYATNSELGFDYLRDN 193 (939)
T ss_pred ----------CCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHH--hcCCCeEEecCCcccccchhhh
Confidence 3348999999999999999999999999999999998887655433 34679999999988 343
Q ss_pred HHhCcCccccccceeEEEecccchhc
Q psy16310 941 IQLGHFHLTELYKINYLVIDETDRMI 966 (1493)
Q Consensus 941 l~~~~~~~~~l~~l~~lVlDEah~ll 966 (1493)
|...... .....+.+.||||+|.++
T Consensus 194 m~~~~~~-~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 194 MATDISE-VVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred hcccccc-cccCccceEEEeccccee
Confidence 3321111 124568899999999864
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-12 Score=157.25 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=82.2
Q ss_pred hHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhc----CCCeEEEEechhhccCC
Q psy16310 534 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD----QNNSILLATDVAARGLD 609 (1493)
Q Consensus 534 ~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~----g~~~VLVaTdv~~rGlD 609 (1493)
..+..++....|+++|-+.|+...+.++..|...-.......|..+ .+...++.|+. |...||++|+.+.+|||
T Consensus 460 ~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvD 537 (636)
T TIGR03117 460 LSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGID 537 (636)
T ss_pred HHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccc
Confidence 4556666777899999999999999999999653223344555432 34668888987 47899999999999999
Q ss_pred C--------C--CCcEEEEecCCCC-------------------------hHHHHHHHhccccCCCC---CeEEEEecCC
Q psy16310 610 I--------P--GIEHVIHYHVPRT-------------------------SEIYIHRSGRTARANNE---GLTVVLIESD 651 (1493)
Q Consensus 610 i--------p--~v~~VI~yd~P~s-------------------------~~~yiQR~GRagR~g~~---G~~i~l~~~~ 651 (1493)
+ | .+++||...+|.. ...+.|-+||-=|.... |. +.++.+.
T Consensus 538 v~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~-i~ilD~R 616 (636)
T TIGR03117 538 LTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRR-IHMLDGR 616 (636)
T ss_pred cCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceE-EEEEeCC
Confidence 9 2 3899998777721 22345888887786553 43 4444444
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >KOG0385|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-12 Score=152.10 Aligned_cols=338 Identities=19% Similarity=0.215 Sum_probs=211.5
Q ss_pred CCcHHHHhhHHHhh---ccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 790 TPTKIQSMVMPSAL---LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l---~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
.++++|.+.+..++ ..|-+.|+.-..|-|||+-. +.++..+....
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~------------------------------- 214 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK------------------------------- 214 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc-------------------------------
Confidence 68999999987544 45778999999999999853 33343332211
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHH--HH-hcCCCcEEEECcHHHHHHHHh
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL--RI-LNKCPHILVATPGRLWEFIQL 943 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~--~~-l~~~~~IlV~TP~rl~~~l~~ 943 (1493)
..+| --||+||...|.. +.+.|++++ .++++.+++|........ .. .....+|+|+|-+.++.--.
T Consensus 215 ------~~~G-PfLVi~P~StL~N-W~~Ef~rf~--P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~- 283 (971)
T KOG0385|consen 215 ------GIPG-PFLVIAPKSTLDN-WMNEFKRFT--PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS- 283 (971)
T ss_pred ------CCCC-CeEEEeeHhhHHH-HHHHHHHhC--CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH-
Confidence 1122 2599999988864 777787775 458888888875433221 12 23468999999998764311
Q ss_pred CcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEeccccc-chHh---HHhhhccCcCcc--
Q psy16310 944 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH-SLKN---SLNLKKGQSKSK-- 1017 (1493)
Q Consensus 944 ~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~-~~~~---~~~~~~~~~~~~-- 1017 (1493)
.+ .--..+++||||||++-.... .+..+++.+. ....++++.|+-. .+.+ ++..........
T Consensus 284 -~l---k~~~W~ylvIDEaHRiKN~~s--~L~~~lr~f~------~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e 351 (971)
T KOG0385|consen 284 -FL---KKFNWRYLVIDEAHRIKNEKS--KLSKILREFK------TDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAE 351 (971)
T ss_pred -HH---hcCCceEEEechhhhhcchhh--HHHHHHHHhc------ccceeEeeCCcccccHHHHHHHHHhhchhhccCHH
Confidence 11 112578999999999865433 4556776663 2345777888642 2211 110000000000
Q ss_pred ---------cccCCCchhHHH------------HhHhc--cCC-------------------------------------
Q psy16310 1018 ---------KVSKGDPSIKRL------------QDLLN--IKS------------------------------------- 1037 (1493)
Q Consensus 1018 ---------~~~~~~~~~~~l------------~~~~~--~~~------------------------------------- 1037 (1493)
........+..+ ...+. +.+
T Consensus 352 ~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k 431 (971)
T KOG0385|consen 352 DFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEK 431 (971)
T ss_pred HHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchh
Confidence 000000000000 00000 000
Q ss_pred ----------------CcEEeccccccccccceeeEEEecccchh---hHHHHHHHhCCCcEEEEecchhhHHHHHHHHH
Q psy16310 1038 ----------------PKIVDLTEKIGITKTLTESKILCKHDEKD---SYLYYFILQHPGRTLVFCNSISSVKRLTQLLT 1098 (1493)
Q Consensus 1038 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~k~---~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~ 1098 (1493)
|-.+.-.+. .........++....|. ..|+..+...+.+||||..-....+-|-.++.
T Consensus 432 ~kL~NI~mQLRKccnHPYLF~g~eP---g~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~ 508 (971)
T KOG0385|consen 432 TKLQNIMMQLRKCCNHPYLFDGAEP---GPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCM 508 (971)
T ss_pred hHHHHHHHHHHHhcCCccccCCCCC---CCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHH
Confidence 000000000 00000011112223333 33444456678899999998888888888888
Q ss_pred hcCCCccccccCCCHHHHHHHHHHHhcCC---CCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCC
Q psy16310 1099 MLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175 (1493)
Q Consensus 1099 ~~~~~~~~lhg~m~~~~R~~~~~~F~~g~---~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G 1175 (1493)
-.++...-+-|.++..+|...++.|.... .-.|++|-+.+-|||+...++||.||--.++..=+|..-||-|-|+..
T Consensus 509 ~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K 588 (971)
T KOG0385|consen 509 LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKK 588 (971)
T ss_pred hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcC
Confidence 88999999999999999999999998643 457899999999999999999999999999999999999999999876
Q ss_pred eEEE--EecCCC
Q psy16310 1176 LTLV--LIESDE 1185 (1493)
Q Consensus 1176 ~~i~--l~~~~e 1185 (1493)
.+.+ |++.+-
T Consensus 589 ~V~V~RLitent 600 (971)
T KOG0385|consen 589 PVVVYRLITENT 600 (971)
T ss_pred ceEEEEEeccch
Confidence 5555 455543
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-12 Score=168.39 Aligned_cols=117 Identities=22% Similarity=0.312 Sum_probs=83.8
Q ss_pred HHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCC--CccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCC
Q psy16310 535 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC--SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG 612 (1493)
Q Consensus 535 ~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~--~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~ 612 (1493)
.+..++...++++|||++|+...+.++..|..... ....+.-+++...|..+++.|+.++..||++|..+.+|||+|+
T Consensus 743 ~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg 822 (928)
T PRK08074 743 YIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPG 822 (928)
T ss_pred HHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCC
Confidence 34444555678999999999999999999875422 1222322444456788999999999999999999999999997
Q ss_pred --CcEEEEecCCC----C--------------------------hHHHHHHHhccccCCCCCeEEEEecCC
Q psy16310 613 --IEHVIHYHVPR----T--------------------------SEIYIHRSGRTARANNEGLTVVLIESD 651 (1493)
Q Consensus 613 --v~~VI~yd~P~----s--------------------------~~~yiQR~GRagR~g~~G~~i~l~~~~ 651 (1493)
+.+||...+|. + +..+.|-+||.=|....--+++++++.
T Consensus 823 ~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 823 DELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred CceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 47888766552 1 233468899998977542234444443
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-12 Score=159.03 Aligned_cols=131 Identities=21% Similarity=0.222 Sum_probs=101.1
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
|. .|+++|.-.-- +|.. --|+.+.||-||||++.+|+.-.-+
T Consensus 83 G~-r~ydVQliGgl-~Lh~--G~IAEM~TGEGKTL~atlpaylnAL---------------------------------- 124 (939)
T PRK12902 83 GM-RHFDVQLIGGM-VLHE--GQIAEMKTGEGKTLVATLPSYLNAL---------------------------------- 124 (939)
T ss_pred CC-CcchhHHHhhh-hhcC--CceeeecCCCChhHHHHHHHHHHhh----------------------------------
Confidence 55 68999987763 5544 4688999999999999999863322
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-----HHHH
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-----WEFI 324 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-----~~~l 324 (1493)
.|..|-|++++--||..=.+++..+..++|++|+++.+++......... .+||+.+|+..| .+.|
T Consensus 125 --------~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDYLRDnm 194 (939)
T PRK12902 125 --------TGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKKNY--ACDITYATNSELGFDYLRDNM 194 (939)
T ss_pred --------cCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHHhc--CCCeEEecCCcccccchhhhh
Confidence 3445999999999999999999999999999999999888776554433 479999999987 5555
Q ss_pred HcCCccccccccccEEEEecCchhh
Q psy16310 325 QLGHFHLTELYKINYLVIDETDRMI 349 (1493)
Q Consensus 325 ~~~~~~~~~l~~i~~lViDEAh~ll 349 (1493)
....... ....+.+.||||||.+|
T Consensus 195 ~~~~~~~-vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 195 ATDISEV-VQRPFNYCVIDEVDSIL 218 (939)
T ss_pred ccccccc-ccCccceEEEeccccee
Confidence 4322222 24568899999999976
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-12 Score=132.81 Aligned_cols=144 Identities=37% Similarity=0.470 Sum_probs=107.4
Q ss_pred CcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccH
Q psy16310 807 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTr 886 (1493)
+++++.+|||+|||..++.++...... ....+++|++|++
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~----------------------------------------~~~~~~lv~~p~~ 40 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS----------------------------------------LKGGQVLVLAPTR 40 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc----------------------------------------ccCCCEEEEcCcH
Confidence 468999999999999988887765422 2335799999999
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhc
Q psy16310 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 966 (1493)
Q Consensus 887 eLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll 966 (1493)
.|+.|+...+...... +..+..+.++..............+|+++|++.+...+..... .....+++|+||+|.+.
T Consensus 41 ~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~---~~~~~~~iiiDE~h~~~ 116 (144)
T cd00046 41 ELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKL---SLKKLDLLILDEAHRLL 116 (144)
T ss_pred HHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCCc---chhcCCEEEEeCHHHHh
Confidence 9999999999887765 6788888887766666655567789999999999887765431 23467899999999987
Q ss_pred cCCChhHHHHHHHHhcccCCCCCceEEEEeccc
Q psy16310 967 ESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999 (1493)
Q Consensus 967 ~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl 999 (1493)
...+......... ......+++++|||+
T Consensus 117 ~~~~~~~~~~~~~-----~~~~~~~~i~~saTp 144 (144)
T cd00046 117 NQGFGLLGLKILL-----KLPKDRQVLLLSATP 144 (144)
T ss_pred hcchHHHHHHHHh-----hCCccceEEEEeccC
Confidence 7654332211111 123667899999996
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >KOG1123|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.6e-13 Score=149.29 Aligned_cols=339 Identities=15% Similarity=0.140 Sum_probs=197.1
Q ss_pred CCChHHHHhhhhhhhccC--CcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 172 KTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 172 ~~pt~iQ~~~i~~~l~~~--~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
..++|||..++...+-+| +.-||+.|.|+|||++-+-.+.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-------------------------------------- 342 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-------------------------------------- 342 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee--------------------------------------
Confidence 458999999998655433 4678899999999998433322
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCc
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~ 329 (1493)
.-+.+||+||.+---+.|+...|..++..-+-.++.++.+... ....++.|+|+|..++..--.+.+-
T Consensus 343 -------tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~e 410 (776)
T KOG1123|consen 343 -------TIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHE 410 (776)
T ss_pred -------eecccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHH
Confidence 1234699999999999999999988876555566666665432 2345678999998776432111100
Q ss_pred ---cccc--cccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEE
Q psy16310 330 ---HLTE--LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTF 404 (1493)
Q Consensus 330 ---~~~~--l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i 404 (1493)
-+.+ -..+.++|+||+|.+-..-|...+.-+-.+ -.+
T Consensus 411 aek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aH--------------------------------------cKL 452 (776)
T KOG1123|consen 411 AEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAH--------------------------------------CKL 452 (776)
T ss_pred HHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHH--------------------------------------hhc
Confidence 0111 124789999999987554443333322221 256
Q ss_pred EEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHH
Q psy16310 405 VFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 484 (1493)
Q Consensus 405 l~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1493)
+++||+-++-.....+... ....-+ ...|+. +.. .+......-..++|+.... .|..| +
T Consensus 453 GLTATLvREDdKI~DLNFL-------IGPKlY---EAnWmd--------L~~-kGhIA~VqCaEVWCpMt~e-Fy~eY-L 511 (776)
T KOG1123|consen 453 GLTATLVREDDKITDLNFL-------IGPKLY---EANWMD--------LQK-KGHIAKVQCAEVWCPMTPE-FYREY-L 511 (776)
T ss_pred cceeEEeecccccccccee-------ecchhh---hccHHH--------HHh-CCceeEEeeeeeecCCCHH-HHHHH-H
Confidence 8899986543222111000 000000 011111 110 0111111112223322111 11111 1
Q ss_pred hcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchh---hHHHHHHhhCCCcEEEEecchhhHHHHH
Q psy16310 485 LQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD---SYLYYFILQHPGRTLVFCNSISSVKRLT 561 (1493)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~---~~l~~~l~~~~~~~IIF~~s~~~a~~L~ 561 (1493)
..... -+.++ ..-...|+ .+|..+-...+.++|||..........+
T Consensus 512 ~~~t~------kr~lL-------------------------yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YA 560 (776)
T KOG1123|consen 512 RENTR------KRMLL-------------------------YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYA 560 (776)
T ss_pred hhhhh------hhhee-------------------------eecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHH
Confidence 10000 00000 01111222 3344444556789999988866555544
Q ss_pred HHHHhcCCCccccccCCCHHHHHHHHHHHhc-CCCeEEEEechhhccCCCCCCcEEEEecCC-CChHHHHHHHhccccCC
Q psy16310 562 QLLTMLKCSPLPLHASMNQRQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVP-RTSEIYIHRSGRTARAN 639 (1493)
Q Consensus 562 ~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~-g~~~VLVaTdv~~rGlDip~v~~VI~yd~P-~s~~~yiQR~GRagR~g 639 (1493)
-.| + --.++|..+|.+|+++++.|.- ..++-++-+-|+...||+|..+++|+...- -|-..=-||.||.-|+.
T Consensus 561 ikl---~--KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 561 IKL---G--KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred HHc---C--CceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 433 2 2458999999999999999985 568899999999999999999999987644 35666789999999975
Q ss_pred CC------CeEEEEecCCcchh
Q psy16310 640 NE------GLTVVLIESDEIPL 655 (1493)
Q Consensus 640 ~~------G~~i~l~~~~e~~~ 655 (1493)
+. ...|.|++.+-..+
T Consensus 636 k~~de~fnafFYSLVS~DTqEM 657 (776)
T KOG1123|consen 636 KRNDEEFNAFFYSLVSKDTQEM 657 (776)
T ss_pred hcCccccceeeeeeeecchHHH
Confidence 42 34556665554333
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.5e-12 Score=159.87 Aligned_cols=91 Identities=27% Similarity=0.253 Sum_probs=72.5
Q ss_pred EEEEecchhhHHHHHHHHHhc----C--CCccccccCCCHHHHHHHHHHH----------------------hc----CC
Q psy16310 1080 TLVFCNSISSVKRLTQLLTML----K--CSPLPLHASMNQRQRLKNLDRF----------------------RD----QN 1127 (1493)
Q Consensus 1080 ~IVF~~s~~~~~~l~~~L~~~----~--~~~~~lhg~m~~~~R~~~~~~F----------------------~~----g~ 1127 (1493)
.+|-++++..+..++..|-.. + +.+.+||+..+...|..++++. ++ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 477888888888888887654 2 3466799999888887766553 11 35
Q ss_pred CCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCC
Q psy16310 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173 (1493)
Q Consensus 1128 ~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~ 1173 (1493)
..|+|||.|++.|+|+ +.+++| .-|.++.+.+||+||+.|.|.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhccccccc
Confidence 6899999999999999 788887 457889999999999999875
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.4e-13 Score=159.08 Aligned_cols=93 Identities=23% Similarity=0.410 Sum_probs=77.1
Q ss_pred cEEEEecchhhHHHHHHHHHhc-------------CC--CccccccCCCHHHHHHHHH---HHhcCCCCeEEeehhhhcc
Q psy16310 1079 RTLVFCNSISSVKRLTQLLTML-------------KC--SPLPLHASMNQRQRLKNLD---RFRDQNNSILLATDVAARG 1140 (1493)
Q Consensus 1079 ~~IVF~~s~~~~~~l~~~L~~~-------------~~--~~~~lhg~m~~~~R~~~~~---~F~~g~~~VLVaTdv~~~G 1140 (1493)
+.|-||.++++...+++.+... ++ .+-.+.|.|...+|...+. .|...+++||----.+++|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 6788999999988888776421 33 3444568899999955444 3567889999999999999
Q ss_pred ccCCCccEEEEecCCCChhHHHHHHhccCCC
Q psy16310 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171 (1493)
Q Consensus 1141 iDip~v~~VI~~d~p~s~~~yiqr~GR~gR~ 1171 (1493)
+|+|..+.||.|++-.+.-+.+|.+||+.|.
T Consensus 542 VDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 542 VDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred CCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999996
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-12 Score=130.60 Aligned_cols=121 Identities=38% Similarity=0.524 Sum_probs=94.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccH
Q psy16310 190 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTr 269 (1493)
+++++++|||+|||.+++..+...... ....+++|++|++
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~----------------------------------------~~~~~~lv~~p~~ 40 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS----------------------------------------LKGGQVLVLAPTR 40 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc----------------------------------------ccCCCEEEEcCcH
Confidence 478999999999999988887765421 1235799999999
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhh
Q psy16310 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 349 (1493)
Q Consensus 270 eLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll 349 (1493)
.|+.|+...+...... +..+..+.+...............+|+++|++.+...+...... ...+.++||||+|.+.
T Consensus 41 ~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~---~~~~~~iiiDE~h~~~ 116 (144)
T cd00046 41 ELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLS---LKKLDLLILDEAHRLL 116 (144)
T ss_pred HHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCCcc---hhcCCEEEEeCHHHHh
Confidence 9999999998887655 67788888877766666666677899999999998877654321 2367899999999987
Q ss_pred hcCCh
Q psy16310 350 ESGHF 354 (1493)
Q Consensus 350 ~~~~~ 354 (1493)
.....
T Consensus 117 ~~~~~ 121 (144)
T cd00046 117 NQGFG 121 (144)
T ss_pred hcchH
Confidence 65443
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >KOG0925|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-11 Score=139.21 Aligned_cols=327 Identities=19% Similarity=0.184 Sum_probs=189.3
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
+..|...+.++...+.|++.. .-|-=-|..-+-..+..++-++++|.||||||.- +|-+..-...
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~-~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQ--iPq~~~~~~~------------ 88 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRR-ELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQ--IPQFVLEYEL------------ 88 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHh-cCchHHhHHHHHHHHhcCceEEEEecCCCCcccc--CcHHHHHHHH------------
Confidence 567888888888887776543 2233335555556788888999999999999964 4422211110
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
.....+..--|.|--|.+++..... .+++..+--+|-. .... .-...+
T Consensus 89 ---------------------------~~~~~v~CTQprrvaamsva~RVad---EMDv~lG~EVGys-IrfE-dC~~~~ 136 (699)
T KOG0925|consen 89 ---------------------------SHLTGVACTQPRRVAAMSVAQRVAD---EMDVTLGEEVGYS-IRFE-DCTSPN 136 (699)
T ss_pred ---------------------------hhccceeecCchHHHHHHHHHHHHH---Hhccccchhcccc-cccc-ccCChh
Confidence 0012356666888888887765533 3334433333311 1100 000000
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
.-.-.+|-|.|+.-.-... .+...++||+||||.-.- -.+.+..+++.+... .+...++.+|||+-..-.+
T Consensus 137 T~Lky~tDgmLlrEams~p----~l~~y~viiLDeahERtl--ATDiLmGllk~v~~~--rpdLk~vvmSatl~a~Kfq- 207 (699)
T KOG0925|consen 137 TLLKYCTDGMLLREAMSDP----LLGRYGVIILDEAHERTL--ATDILMGLLKEVVRN--RPDLKLVVMSATLDAEKFQ- 207 (699)
T ss_pred HHHHHhcchHHHHHHhhCc----ccccccEEEechhhhhhH--HHHHHHHHHHHHHhh--CCCceEEEeecccchHHHH-
Confidence 0122456666655443322 366789999999996210 012233344433322 2578999999999522111
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH-----hCCCcEE
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL-----QHPGRTL 1081 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-----~~~~~~I 1081 (1493)
. ++.+..++.+.... .+...|......+.....+..+. ..+|-++
T Consensus 208 ------------------------~--yf~n~Pll~vpg~~----PvEi~Yt~e~erDylEaairtV~qih~~ee~GDil 257 (699)
T KOG0925|consen 208 ------------------------R--YFGNAPLLAVPGTH----PVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDIL 257 (699)
T ss_pred ------------------------H--HhCCCCeeecCCCC----ceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEE
Confidence 1 12233333333211 11111211222222333333222 3488999
Q ss_pred EEecchhhHHHHHHHHHh----cC-----CCccccccCCCHHHHHHHHHHHhc---C--CCCeEEeehhhhccccCCCcc
Q psy16310 1082 VFCNSISSVKRLTQLLTM----LK-----CSPLPLHASMNQRQRLKNLDRFRD---Q--NNSILLATDVAARGLDIPGIE 1147 (1493)
Q Consensus 1082 VF~~s~~~~~~l~~~L~~----~~-----~~~~~lhg~m~~~~R~~~~~~F~~---g--~~~VLVaTdv~~~GiDip~v~ 1147 (1493)
||.......+..++.+.. ++ ..+.++| +.+..++++--.. | ..+|+|+|++++..+-+++|.
T Consensus 258 vFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv 333 (699)
T KOG0925|consen 258 VFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIV 333 (699)
T ss_pred EEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEE
Confidence 999998887777776652 22 4566777 3333343333221 2 357999999999999999999
Q ss_pred EEEEec------------------CCCChhHHHHHHhccCCCCCCCeEEEEecCC
Q psy16310 1148 HVIHYH------------------VPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184 (1493)
Q Consensus 1148 ~VI~~d------------------~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 1184 (1493)
+||.-+ .|.|..+--||.||+||. ++|.|+.+++..
T Consensus 334 ~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 334 FVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 999633 266788889999999996 699999999753
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.9e-13 Score=122.25 Aligned_cols=81 Identities=41% Similarity=0.695 Sum_probs=77.4
Q ss_pred HHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCC
Q psy16310 1092 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171 (1493)
Q Consensus 1092 ~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~ 1171 (1493)
.++..|...++.+..+||+|+..+|..+++.|..+...|||+|+++++|+|+|++++||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy16310 1172 N 1172 (1493)
Q Consensus 1172 g 1172 (1493)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
|
|
| >KOG0390|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-11 Score=148.26 Aligned_cols=121 Identities=19% Similarity=0.226 Sum_probs=90.7
Q ss_pred CchhhHHHHHHhhCCCcEEEEec---chhhHHH-HHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCC---CeEEEEec
Q psy16310 530 DEKDSYLYYFILQHPGRTLVFCN---SISSVKR-LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATD 602 (1493)
Q Consensus 530 ~~k~~~l~~~l~~~~~~~IIF~~---s~~~a~~-L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~---~~VLVaTd 602 (1493)
+.++..|..++.....++++|+. ....... +..+++-.|..+..+||.|+..+|..+++.|.+-. .-.|.+|-
T Consensus 577 s~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsK 656 (776)
T KOG0390|consen 577 SGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSK 656 (776)
T ss_pred hhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecc
Confidence 45666666666555445554444 3333333 33444555999999999999999999999997633 33566777
Q ss_pred hhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeE--EEEecC
Q psy16310 603 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT--VVLIES 650 (1493)
Q Consensus 603 v~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~--i~l~~~ 650 (1493)
+.+.||++-+.+.||.||+++||..=.|.++|+=|.|..-.| |.|++.
T Consensus 657 Agg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlat 706 (776)
T KOG0390|consen 657 AGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLAT 706 (776)
T ss_pred cccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecC
Confidence 888999999999999999999999999999999999987544 445544
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.9e-13 Score=121.49 Aligned_cols=81 Identities=41% Similarity=0.695 Sum_probs=77.1
Q ss_pred HHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccC
Q psy16310 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 638 (1493)
Q Consensus 559 ~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~ 638 (1493)
.++..|...++.+..+||+|+..+|..+++.|++|...|||+|+++++|+|+|++++||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46677888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy16310 639 N 639 (1493)
Q Consensus 639 g 639 (1493)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
|
|
| >KOG0953|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-12 Score=147.13 Aligned_cols=112 Identities=22% Similarity=0.340 Sum_probs=91.8
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCC-ccccccCCCHHHHHHHHHHHhc--CCCeEEEEechhhccCCCCCCcEEEEec
Q psy16310 544 PGRTLVFCNSISSVKRLTQLLTMLKCS-PLPLHASMNQRQRLKNLDRFRD--QNNSILLATDVAARGLDIPGIEHVIHYH 620 (1493)
Q Consensus 544 ~~~~IIF~~s~~~a~~L~~~L~~~~~~-~~~lhg~~~~~~R~~vl~~Fr~--g~~~VLVaTdv~~rGlDip~v~~VI~yd 620 (1493)
+|.||| |-|++....+...+...+.. +++++|++++..|..--..|.+ ++++||||||..++|+|+ +++.||.|+
T Consensus 357 ~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~s 434 (700)
T KOG0953|consen 357 PGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYS 434 (700)
T ss_pred CCCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEee
Confidence 455655 66788888899889888766 9999999999999999999977 999999999999999999 899999988
Q ss_pred CC---------CChHHHHHHHhccccCCCC---CeEEEEecCCcchhhhh
Q psy16310 621 VP---------RTSEIYIHRSGRTARANNE---GLTVVLIESDEIPLKTK 658 (1493)
Q Consensus 621 ~P---------~s~~~yiQR~GRagR~g~~---G~~i~l~~~~e~~~~~~ 658 (1493)
+- -++..-.|.+|||||.|.. |.+.++. .+|+....+
T Consensus 435 l~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~-~eDL~~L~~ 483 (700)
T KOG0953|consen 435 LIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH-SEDLKLLKR 483 (700)
T ss_pred cccCCcccceeccHHHHHHHhhcccccccCCcCceEEEee-HhhHHHHHH
Confidence 64 5577889999999998753 7777765 334444333
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-10 Score=146.41 Aligned_cols=117 Identities=21% Similarity=0.365 Sum_probs=81.9
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhc-CCCccccccCCCHHHHHHHHHHHhc----CCCCeEEeehhhhccccCCC--ccE
Q psy16310 1076 HPGRTLVFCNSISSVKRLTQLLTML-KCSPLPLHASMNQRQRLKNLDRFRD----QNNSILLATDVAARGLDIPG--IEH 1148 (1493)
Q Consensus 1076 ~~~~~IVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~m~~~~R~~~~~~F~~----g~~~VLVaTdv~~~GiDip~--v~~ 1148 (1493)
.++.++||++|....+.++..|... +.. ...+|. ..|..+++.|++ |+..||++|..+.+|||+|+ +++
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 5677999999999999999998743 333 334554 256778877774 67889999999999999987 788
Q ss_pred EEEecCCC----Ch--------------------------hHHHHHHhccCCCCCCCeEEEEecCC--CHHHHHHHHHhc
Q psy16310 1149 VIHYHVPR----TS--------------------------EIYIHRSGRTARANNEGLTLVLIESD--EIPLYIKMFNSL 1196 (1493)
Q Consensus 1149 VI~~d~p~----s~--------------------------~~yiqr~GR~gR~g~~G~~i~l~~~~--e~~~~~~~~~~~ 1196 (1493)
||...+|- ++ ..+.|-+||.-|....--+++++++. ...+-+.+++++
T Consensus 609 vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~sL 688 (697)
T PRK11747 609 VIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLDAL 688 (697)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHHhC
Confidence 99877662 21 12468889999985443344455544 223445666654
|
|
| >KOG0387|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-10 Score=138.75 Aligned_cols=131 Identities=22% Similarity=0.284 Sum_probs=106.7
Q ss_pred hhhHHHHHHH---hCCCcEEEEecchhhHHHHHHHHH-hcCCCccccccCCCHHHHHHHHHHHhcCCC--CeEEeehhhh
Q psy16310 1065 KDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLT-MLKCSPLPLHASMNQRQRLKNLDRFRDQNN--SILLATDVAA 1138 (1493)
Q Consensus 1065 k~~~l~~~l~---~~~~~~IVF~~s~~~~~~l~~~L~-~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~--~VLVaTdv~~ 1138 (1493)
|...+..++. ..+.++|+|..++...+.|...|. ..|+...-+.|..+...|..++++|..+.. -.|++|-|.+
T Consensus 531 Km~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGG 610 (923)
T KOG0387|consen 531 KMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGG 610 (923)
T ss_pred hHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccc
Confidence 4444544443 347799999999999999999998 679999999999999999999999998764 3688999999
Q ss_pred ccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEE--EecCCC---HHHHHHHHHh
Q psy16310 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV--LIESDE---IPLYIKMFNS 1195 (1493)
Q Consensus 1139 ~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~--l~~~~e---~~~~~~~~~~ 1195 (1493)
-|+++-..+-||.||+-+++..=.|..-|+=|.|+.-.+++ |++..- .-+.+.+++.
T Consensus 611 LGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq 672 (923)
T KOG0387|consen 611 LGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQ 672 (923)
T ss_pred cccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998654443 455543 3344444443
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.1e-12 Score=136.10 Aligned_cols=157 Identities=20% Similarity=0.113 Sum_probs=100.7
Q ss_pred CCcHHHHhhHHHhhc------cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhh
Q psy16310 790 TPTKIQSMVMPSALL------ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~------~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1493)
+|+|+|.+++..++. ..+.+++.+|||||||.+++..+....
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-------------------------------- 50 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-------------------------------- 50 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH--------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc--------------------------------
Confidence 578999999986653 358999999999999999876554432
Q ss_pred hcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEE-----------EEcCCCHHHHHHHhcCCCcEEEE
Q psy16310 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVAC-----------VVGGMSTEKQLRILNKCPHILVA 932 (1493)
Q Consensus 864 ~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~-----------~~gg~~~~~~~~~l~~~~~IlV~ 932 (1493)
. +++|++|+..|+.|+.+.+..+.......... ..................+++++
T Consensus 51 ----------~---~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 117 (184)
T PF04851_consen 51 ----------R---KVLIVAPNISLLEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILT 117 (184)
T ss_dssp ----------C---EEEEEESSHHHHHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEE
T ss_pred ----------c---ceeEecCHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhh
Confidence 1 69999999999999999997665332111111 00001111122233446689999
Q ss_pred CcHHHHHHHHhCcC--------ccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEeccccc
Q psy16310 933 TPGRLWEFIQLGHF--------HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001 (1493)
Q Consensus 933 TP~rl~~~l~~~~~--------~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~ 1001 (1493)
|...+......... ........++||+||||++....- ...++. .....+++||||+.+
T Consensus 118 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~~---~~~i~~-------~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 118 TYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPSDSS---YREIIE-------FKAAFILGLTATPFR 184 (184)
T ss_dssp EHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHHHHH---HHHHHH-------SSCCEEEEEESS-S-
T ss_pred HHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCCHHH---HHHHHc-------CCCCeEEEEEeCccC
Confidence 99999887654221 011234578999999999765321 444444 245679999999863
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-12 Score=151.18 Aligned_cols=102 Identities=24% Similarity=0.411 Sum_probs=78.9
Q ss_pred cEEEEecchhhHHHHHHHHHh---------------cCCCccccccCCCHHHHHHHHH---HHhcCCCeEEEEechhhcc
Q psy16310 546 RTLVFCNSISSVKRLTQLLTM---------------LKCSPLPLHASMNQRQRLKNLD---RFRDQNNSILLATDVAARG 607 (1493)
Q Consensus 546 ~~IIF~~s~~~a~~L~~~L~~---------------~~~~~~~lhg~~~~~~R~~vl~---~Fr~g~~~VLVaTdv~~rG 607 (1493)
++|-||.+.++...++..+.. +.+++-...|.|.-.+|...+. .|...+++||-.--.+++|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 678888888888777766632 2344455668899888855443 3566788999888899999
Q ss_pred CCCCCCcEEEEecCCCChHHHHHHHhccccCC--C-CCeEEEE
Q psy16310 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN--N-EGLTVVL 647 (1493)
Q Consensus 608 lDip~v~~VI~yd~P~s~~~yiQR~GRagR~g--~-~G~~i~l 647 (1493)
+|+|..+.||.||+-.+..+.+|.+||+-|-. + -|+.++=
T Consensus 542 VDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILP 584 (1518)
T COG4889 542 VDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILP 584 (1518)
T ss_pred CCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEE
Confidence 99999999999999999999999999999932 2 2665553
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-10 Score=149.93 Aligned_cols=114 Identities=24% Similarity=0.377 Sum_probs=82.4
Q ss_pred hhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCC-ccccccCCCHHHHHHHHHHHhcCCC-CeEEeehhhhccccC
Q psy16310 1066 DSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS-PLPLHASMNQRQRLKNLDRFRDQNN-SILLATDVAARGLDI 1143 (1493)
Q Consensus 1066 ~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~m~~~~R~~~~~~F~~g~~-~VLVaTdv~~~GiDi 1143 (1493)
...+..++...+++++||++|....+.++..+...... ....+|. ..+...++.|+.+.- .++|+|..+++|||+
T Consensus 468 ~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~ 544 (654)
T COG1199 468 AAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASGEGLILVGGGSFWEGVDF 544 (654)
T ss_pred HHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCC---CcHHHHHHHHHHhcCCeEEEeeccccCcccC
Confidence 33445556667889999999999999999999876553 2234444 344588888987665 999999999999999
Q ss_pred CCc--cEEEEecCCC------------------------------ChhHHHHHHhccCCCCCCCeEEEEec
Q psy16310 1144 PGI--EHVIHYHVPR------------------------------TSEIYIHRSGRTARANNEGLTLVLIE 1182 (1493)
Q Consensus 1144 p~v--~~VI~~d~p~------------------------------s~~~yiqr~GR~gR~g~~G~~i~l~~ 1182 (1493)
|+- .+||...+|- -...+.|.+||+-|.-..--.+++++
T Consensus 545 ~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD 615 (654)
T COG1199 545 PGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLD 615 (654)
T ss_pred CCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEec
Confidence 874 6788877662 12346899999999644333333333
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=133.13 Aligned_cols=134 Identities=20% Similarity=0.082 Sum_probs=87.2
Q ss_pred CChHHHHhhhhhhhc------cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhh
Q psy16310 173 TPTKIQSMVMPSALL------ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 246 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~------~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1493)
+|+++|.+++..++. .++.+++.+|||||||.+++..+....
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-------------------------------- 50 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-------------------------------- 50 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH--------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc--------------------------------
Confidence 489999999986553 368999999999999999876554332
Q ss_pred hcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEE-----------EcCCCHHHHHHHhcCCCCEEEe
Q psy16310 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACV-----------VGGMSTEKQLRILNKCPHILVA 315 (1493)
Q Consensus 247 ~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~-----------~G~~~~~~~~~~l~~~~~IiV~ 315 (1493)
. +++|++|+..|+.|....+..+........... .................++++.
T Consensus 51 -----------~--~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 117 (184)
T PF04851_consen 51 -----------R--KVLIVAPNISLLEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILT 117 (184)
T ss_dssp -----------C--EEEEEESSHHHHHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEE
T ss_pred -----------c--ceeEecCHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhh
Confidence 1 699999999999999999976654321111110 0011111122233455689999
Q ss_pred CcHHHHHHHHcCCc--------cccccccccEEEEecCchhhhc
Q psy16310 316 TPGRLWEFIQLGHF--------HLTELYKINYLVIDETDRMIES 351 (1493)
Q Consensus 316 TP~~L~~~l~~~~~--------~~~~l~~i~~lViDEAh~ll~~ 351 (1493)
|...|......... .........+||+||||++...
T Consensus 118 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~ 161 (184)
T PF04851_consen 118 TYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPSD 161 (184)
T ss_dssp EHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHHH
T ss_pred HHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCCH
Confidence 99999887653211 1112335789999999998654
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.3e-11 Score=145.20 Aligned_cols=115 Identities=23% Similarity=0.319 Sum_probs=97.1
Q ss_pred cccCchhhHHHHHHhhC-----------------CCcEEEEecchhhHHHHHHHHHh-cCCCc--cccccCCCHHHHHHH
Q psy16310 527 CKHDEKDSYLYYFILQH-----------------PGRTLVFCNSISSVKRLTQLLTM-LKCSP--LPLHASMNQRQRLKN 586 (1493)
Q Consensus 527 ~~~~~k~~~l~~~l~~~-----------------~~~~IIF~~s~~~a~~L~~~L~~-~~~~~--~~lhg~~~~~~R~~v 586 (1493)
...+.|...|.++|..- ++++||||.-+.....+.+-|-. .-.++ ..+.|..++.+|.++
T Consensus 1306 i~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~ki 1385 (1549)
T KOG0392|consen 1306 IQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKI 1385 (1549)
T ss_pred hhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHH
Confidence 45667888888887543 35899999999999988876643 33344 378999999999999
Q ss_pred HHHHhcC-CCeEE-EEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCC
Q psy16310 587 LDRFRDQ-NNSIL-LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE 641 (1493)
Q Consensus 587 l~~Fr~g-~~~VL-VaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~ 641 (1493)
.++|.++ .+.|| ++|-|.+-|+|+.+.+.||.++--+|+..-+|.+-||-|-|..
T Consensus 1386 V~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQK 1442 (1549)
T KOG0392|consen 1386 VERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQK 1442 (1549)
T ss_pred HHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCc
Confidence 9999998 67765 7888999999999999999999999999999999999999965
|
|
| >KOG0384|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.8e-11 Score=150.60 Aligned_cols=125 Identities=17% Similarity=0.261 Sum_probs=107.0
Q ss_pred cCchhhHHHHHH---hhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhc---CCCeEEEEec
Q psy16310 529 HDEKDSYLYYFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD---QNNSILLATD 602 (1493)
Q Consensus 529 ~~~k~~~l~~~l---~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~---g~~~VLVaTd 602 (1493)
.+.|.-+|-.+| ...++++|||..-.....-|+.+|...++.+..+.|.+...-|...+++|.. ...-.|+||-
T Consensus 681 sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTR 760 (1373)
T KOG0384|consen 681 SSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTR 760 (1373)
T ss_pred hcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecc
Confidence 344444443333 4457899999999999999999999999999999999999999999999964 4567899999
Q ss_pred hhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCC--eEEEEecCCcc
Q psy16310 603 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG--LTVVLIESDEI 653 (1493)
Q Consensus 603 v~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G--~~i~l~~~~e~ 653 (1493)
+.+-|||+-..+.||.||--+||+.=+|...||-|.|..- .+|.|++.+-+
T Consensus 761 AGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 761 AGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred cCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 9999999999999999999999999999999999999764 45677777543
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-10 Score=144.43 Aligned_cols=129 Identities=12% Similarity=0.126 Sum_probs=91.2
Q ss_pred CCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHH
Q psy16310 815 TGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894 (1493)
Q Consensus 815 TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~ 894 (1493)
+|||||.+|+-.+-..+. .+.++|||+|...|+.|+.+
T Consensus 169 ~GSGKTevyl~~i~~~l~------------------------------------------~Gk~vLvLvPEi~lt~q~~~ 206 (665)
T PRK14873 169 PGEDWARRLAAAAAATLR------------------------------------------AGRGALVVVPDQRDVDRLEA 206 (665)
T ss_pred CCCcHHHHHHHHHHHHHH------------------------------------------cCCeEEEEecchhhHHHHHH
Confidence 599999999877765552 34479999999999999999
Q ss_pred HHHHhhCCCCcEEEEEEcCCCHHHHHH----HhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccC--
Q psy16310 895 HILDAGKYTPVKVACVVGGMSTEKQLR----ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES-- 968 (1493)
Q Consensus 895 ~~~~~~~~~~~~v~~~~gg~~~~~~~~----~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~-- 968 (1493)
.|+..+. +..+..++++.+..+..+ .......|+|||-.-+ +..+.++++||+||-|.-.-.
T Consensus 207 rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv----------FaP~~~LgLIIvdEEhd~sykq~ 274 (665)
T PRK14873 207 ALRALLG--AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV----------FAPVEDLGLVAIWDDGDDLLAEP 274 (665)
T ss_pred HHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE----------EeccCCCCEEEEEcCCchhhcCC
Confidence 9988652 256888999887664332 3344579999997654 245778999999999964321
Q ss_pred -C---ChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 969 -G---HFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 969 -~---~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
+ +..++....... .+..+++.|||++-+.
T Consensus 275 ~~p~yhaRdvA~~Ra~~------~~~~lvLgSaTPSles 307 (665)
T PRK14873 275 RAPYPHAREVALLRAHQ------HGCALLIGGHARTAEA 307 (665)
T ss_pred CCCCccHHHHHHHHHHH------cCCcEEEECCCCCHHH
Confidence 1 122333333332 5788999999997443
|
|
| >KOG0390|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=5e-10 Score=138.29 Aligned_cols=115 Identities=18% Similarity=0.223 Sum_probs=87.5
Q ss_pred hhHHHHHHHhCCCcEEEEec----chhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCC---CCeEEeehhhh
Q psy16310 1066 DSYLYYFILQHPGRTLVFCN----SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATDVAA 1138 (1493)
Q Consensus 1066 ~~~l~~~l~~~~~~~IVF~~----s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~---~~VLVaTdv~~ 1138 (1493)
...|..++.....++++|+- -+...+.+....+-.|+.+..+||.|+..+|..+++.|.+-. .-.|.+|-+.+
T Consensus 580 l~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg 659 (776)
T KOG0390|consen 580 LLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGG 659 (776)
T ss_pred HHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEeccccc
Confidence 33444444333344444443 344444455555556999999999999999999999998633 33566777999
Q ss_pred ccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEE
Q psy16310 1139 RGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180 (1493)
Q Consensus 1139 ~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l 1180 (1493)
.||++-+.+.||.||+..+++.=.|.++|+=|.|+.-.|+++
T Consensus 660 ~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 660 EGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred CceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 999999999999999999999999999999999987766654
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3e-10 Score=147.66 Aligned_cols=107 Identities=23% Similarity=0.391 Sum_probs=81.0
Q ss_pred hhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCC-ccccccCCCHHHHHHHHHHHhcCCC-eEEEEechhhccCC
Q psy16310 532 KDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCS-PLPLHASMNQRQRLKNLDRFRDQNN-SILLATDVAARGLD 609 (1493)
Q Consensus 532 k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~-~~~lhg~~~~~~R~~vl~~Fr~g~~-~VLVaTdv~~rGlD 609 (1493)
-...+..++...++++|||++|....+.+...+...... ....+|. ..+...++.|+.+.- .++|+|..+.+|+|
T Consensus 467 ~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD 543 (654)
T COG1199 467 LAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASGEGLILVGGGSFWEGVD 543 (654)
T ss_pred HHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCC---CcHHHHHHHHHHhcCCeEEEeeccccCccc
Confidence 345566667777889999999999999999999876553 2333444 334478888887665 99999999999999
Q ss_pred CCC--CcEEEEecCC------------------------------CChHHHHHHHhccccCCCC
Q psy16310 610 IPG--IEHVIHYHVP------------------------------RTSEIYIHRSGRTARANNE 641 (1493)
Q Consensus 610 ip~--v~~VI~yd~P------------------------------~s~~~yiQR~GRagR~g~~ 641 (1493)
+|+ +..||...+| .-+....|-+||.=|.-..
T Consensus 544 ~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D 607 (654)
T COG1199 544 FPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDD 607 (654)
T ss_pred CCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCC
Confidence 987 5778877766 2244557999999995543
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-09 Score=138.61 Aligned_cols=82 Identities=24% Similarity=0.428 Sum_probs=62.0
Q ss_pred HHHHHhhCCCcEEEEecchhhHHHHHHHHHhc-CCCccccccCCCHHHHHHHHHHHh----cCCCeEEEEechhhccCCC
Q psy16310 536 LYYFILQHPGRTLVFCNSISSVKRLTQLLTML-KCSPLPLHASMNQRQRLKNLDRFR----DQNNSILLATDVAARGLDI 610 (1493)
Q Consensus 536 l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~-~~~~~~lhg~~~~~~R~~vl~~Fr----~g~~~VLVaTdv~~rGlDi 610 (1493)
+..++. .++++|||++|+...+.++..|... +.. ...+|. ..+..+++.|+ .|...||++|..+.+|||+
T Consensus 527 i~~l~~-~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~ 601 (697)
T PRK11747 527 LPELLE-KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDL 601 (697)
T ss_pred HHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccC
Confidence 334444 5667999999999999999988643 332 333553 24667887776 4788899999999999999
Q ss_pred CC--CcEEEEecCC
Q psy16310 611 PG--IEHVIHYHVP 622 (1493)
Q Consensus 611 p~--v~~VI~yd~P 622 (1493)
|+ +++||...+|
T Consensus 602 pGd~l~~vII~kLP 615 (697)
T PRK11747 602 PGDYLTQVIITKIP 615 (697)
T ss_pred CCCceEEEEEEcCC
Confidence 97 7899987766
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-10 Score=142.06 Aligned_cols=159 Identities=19% Similarity=0.221 Sum_probs=114.6
Q ss_pred hhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCC
Q psy16310 493 CEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKC 569 (1493)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~ 569 (1493)
..+...+...+.-.+..+.....+........++.....|...+...+.. .+.|+||-|.|....+.|+++|...|+
T Consensus 574 ~tea~Ef~~IY~L~Vv~IPTnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI 653 (1112)
T PRK12901 574 ETEAGEFWDIYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKI 653 (1112)
T ss_pred HHHHHHHHHHhCCCEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCC
Confidence 33444555555555554444444433333444555556677666655543 467999999999999999999999999
Q ss_pred CccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCC---CC-----cEEEEecCCCChHHHHHHHhccccCCCC
Q psy16310 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP---GI-----EHVIHYHVPRTSEIYIHRSGRTARANNE 641 (1493)
Q Consensus 570 ~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip---~v-----~~VI~yd~P~s~~~yiQR~GRagR~g~~ 641 (1493)
+..++++.....+-.-+-++ --...|-|||++|+||-||. +| =+||-...+.|..---|-.||+||-|.+
T Consensus 654 ~H~VLNAK~h~~EAeIVA~A--G~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDP 731 (1112)
T PRK12901 654 PHNVLNAKLHQKEAEIVAEA--GQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDP 731 (1112)
T ss_pred cHHHhhccchhhHHHHHHhc--CCCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCC
Confidence 98888887543333222222 22347999999999999996 22 3889999999999999999999999999
Q ss_pred CeEEEEecCCcc
Q psy16310 642 GLTVVLIESDEI 653 (1493)
Q Consensus 642 G~~i~l~~~~e~ 653 (1493)
|.+-.|++-+|-
T Consensus 732 GsS~f~lSLEDd 743 (1112)
T PRK12901 732 GSSQFYVSLEDN 743 (1112)
T ss_pred CcceEEEEcccH
Confidence 999999877663
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-09 Score=125.81 Aligned_cols=306 Identities=20% Similarity=0.228 Sum_probs=199.0
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-Cc----EEEEEEc----C----------CCHHHHHHHhc------
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PV----KVACVVG----G----------MSTEKQLRILN------ 924 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~----~v~~~~g----g----------~~~~~~~~~l~------ 924 (1493)
....-..+++|||+|+|.-|.++.+.+..+.... .+ +...-+| + ......+..+-
T Consensus 31 RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD 110 (442)
T PF06862_consen 31 RDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDD 110 (442)
T ss_pred hccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccc
Confidence 3445667899999999999999999987765331 00 0000011 0 00011111111
Q ss_pred -------------------CCCcEEEECcHHHHHHHHh---CcCccccccceeEEEecccchhccCCChhHHHHHHHHhc
Q psy16310 925 -------------------KCPHILVATPGRLWEFIQL---GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVT 982 (1493)
Q Consensus 925 -------------------~~~~IlV~TP~rl~~~l~~---~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~ 982 (1493)
...|||||+|=-|...+.. .......|+.+.++|+|-||.|+- .-+..+..+++.+.
T Consensus 111 ~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~M-QNW~Hv~~v~~~lN 189 (442)
T PF06862_consen 111 CFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLM-QNWEHVLHVFEHLN 189 (442)
T ss_pred eEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHH-hhHHHHHHHHHHhc
Confidence 1359999999998877764 334455688999999999997654 34467777777776
Q ss_pred ccCC-------------------CCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEec
Q psy16310 983 MTET-------------------SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL 1043 (1493)
Q Consensus 983 ~~~~-------------------~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 1043 (1493)
..+. ..-||+++||+...+.+...+............ +..+... .
T Consensus 190 ~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~---------------~~~~~~~-~ 253 (442)
T PF06862_consen 190 LQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVR---------------LKPPYEA-S 253 (442)
T ss_pred cCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEE---------------Eeecccc-c
Confidence 5322 123899999999998877665432111111000 0000000 0
Q ss_pred cccccccccceeeEEE--ec-----ccchhhHHHHHH----H--hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccC
Q psy16310 1044 TEKIGITKTLTESKIL--CK-----HDEKDSYLYYFI----L--QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110 (1493)
Q Consensus 1044 ~~~~~~~~~~~~~~~~--~~-----~~~k~~~l~~~l----~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~ 1110 (1493)
.........+.+.+.. |. .+.+..+....+ . ...+.+|||++|--.--+|..+|+..++....+|--
T Consensus 254 g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EY 333 (442)
T PF06862_consen 254 GVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEY 333 (442)
T ss_pred eeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEeccc
Confidence 0001122233333322 11 223333333211 1 234789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEeehhh--hccccCCCccEEEEecCCCChhHHHHHHhccCCCC------CCCeEEEEec
Q psy16310 1111 MNQRQRLKNLDRFRDQNNSILLATDVA--ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN------NEGLTLVLIE 1182 (1493)
Q Consensus 1111 m~~~~R~~~~~~F~~g~~~VLVaTdv~--~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g------~~G~~i~l~~ 1182 (1493)
.++.+-.+.-..|..|+..||+.|.=+ =+-..|.++.+||.|.+|..+.-|-..++-.+... ..+.|.++++
T Consensus 334 ts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lys 413 (442)
T PF06862_consen 334 TSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYS 413 (442)
T ss_pred CCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEec
Confidence 999998999999999999999999843 46688999999999999999988877775544433 2578999998
Q ss_pred CCCHHHHHHH
Q psy16310 1183 SDEIPLYIKM 1192 (1493)
Q Consensus 1183 ~~e~~~~~~~ 1192 (1493)
..|...+.++
T Consensus 414 k~D~~~LErI 423 (442)
T PF06862_consen 414 KYDALRLERI 423 (442)
T ss_pred HhHHHHHHHH
Confidence 8887766655
|
; GO: 0005634 nucleus |
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-10 Score=143.37 Aligned_cols=91 Identities=26% Similarity=0.246 Sum_probs=69.1
Q ss_pred EEEEecchhhHHHHHHHHHhc------CCCccccccCCCHHHHHHHHHHH----------------------hc----CC
Q psy16310 547 TLVFCNSISSVKRLTQLLTML------KCSPLPLHASMNQRQRLKNLDRF----------------------RD----QN 594 (1493)
Q Consensus 547 ~IIF~~s~~~a~~L~~~L~~~------~~~~~~lhg~~~~~~R~~vl~~F----------------------r~----g~ 594 (1493)
++|-+.+...+..++..|-.. .+.+++||+..+...|..+.+.. .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 477778888888888777543 34577899988777776555432 12 46
Q ss_pred CeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCC
Q psy16310 595 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 640 (1493)
Q Consensus 595 ~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~ 640 (1493)
..|+|+|.|.+-|+|+ +.+++|. -|.++.+.|||+||+-|.|.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 7899999999999999 6777754 46789999999999999874
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.5e-09 Score=131.83 Aligned_cols=123 Identities=22% Similarity=0.253 Sum_probs=95.7
Q ss_pred cccchhhHHHHHHH---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhh
Q psy16310 1061 KHDEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 1137 (1493)
Q Consensus 1061 ~~~~k~~~l~~~l~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~ 1137 (1493)
....|..+++..+. ..+.|+||-+.|+...+.|+..|...|++..++++.....+-.-+-+ ....-.|-|||++|
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~--AG~~GaVTIATNMA 686 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE--AGQPGTVTIATNMA 686 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh--cCCCCcEEEeccCc
Confidence 33455555555443 34789999999999999999999999999888888644333322222 22345699999999
Q ss_pred hccccCC--------CccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCC
Q psy16310 1138 ARGLDIP--------GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185 (1493)
Q Consensus 1138 ~~GiDip--------~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e 1185 (1493)
+||-||. +=-|||--..|.|..---|-.||+||-|.+|.+..|++-.|
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 9999996 33578888889999999999999999999999999987654
|
|
| >KOG2340|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-09 Score=124.48 Aligned_cols=369 Identities=20% Similarity=0.252 Sum_probs=223.1
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCC---cc--hhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHH--
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGS---GK--TLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE-- 861 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGs---GK--Tla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 861 (1493)
..+|+.|.+.+. +....+|++. ||+| |+ +-+|++.++++++..+. .++++.+.
T Consensus 215 ~pltalQ~~L~~-~m~~YrDl~y--~~~s~kn~~e~R~lYclH~lNHi~K~r~-----------------~IL~Nn~r~~ 274 (698)
T KOG2340|consen 215 EPLTALQKELFK-IMFNYRDLLY--PTRSQKNGEEYRSLYCLHALNHILKTRD-----------------LILGNNRRLA 274 (698)
T ss_pred CcchHHHHHHHH-HHHhhhhhcc--ccccccccchhhhhHHHHHHHHHHHHHH-----------------HHhcchHhhh
Confidence 467999999996 5667789874 4544 44 56789999999986431 11111111
Q ss_pred ---hh-hcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCc-EE--------EEEEcC---------------
Q psy16310 862 ---ES-ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPV-KV--------ACVVGG--------------- 913 (1493)
Q Consensus 862 ---~~-~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~-~v--------~~~~gg--------------- 913 (1493)
.+ .....+....-..++||||||||+-|..+.+.+..++.+..- +. .--++|
T Consensus 275 Sqk~g~~~~~~frDQG~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~ 354 (698)
T KOG2340|consen 275 SQKEGENPDESFRDQGFTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDF 354 (698)
T ss_pred hhhcCCCCchhhhhcCCCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhH
Confidence 00 122334455667789999999999999999999887544321 00 011121
Q ss_pred -------CCHH---------HHHHHh--cCCCcEEEECcHHHHHHHH---hCcCccccccceeEEEecccchhccCCChh
Q psy16310 914 -------MSTE---------KQLRIL--NKCPHILVATPGRLWEFIQ---LGHFHLTELYKINYLVIDETDRMIESGHFP 972 (1493)
Q Consensus 914 -------~~~~---------~~~~~l--~~~~~IlV~TP~rl~~~l~---~~~~~~~~l~~l~~lVlDEah~ll~~~~~~ 972 (1493)
.... +-.... ....||+||+|--|..++. .....+..++.+.++|||-||.|+...+ .
T Consensus 355 ~~lf~GNtDD~FriGl~ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-E 433 (698)
T KOG2340|consen 355 EELFSGNTDDAFRIGLAFTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-E 433 (698)
T ss_pred HHHhcCCCcchhhhhHHHHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-H
Confidence 1100 000000 1245999999988877775 2233445577899999999998876544 6
Q ss_pred HHHHHHHHhcccCCC-------------------CCceEEEEecccccchHhHHhhhccCcC----cccccCCCchhHHH
Q psy16310 973 ELKNILDRVTMTETS-------------------QPRQTFVFSATLTHSLKNSLNLKKGQSK----SKKVSKGDPSIKRL 1029 (1493)
Q Consensus 973 ~l~~il~~l~~~~~~-------------------~~~q~ll~SATl~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l 1029 (1493)
.+..|+..|...+.. --+|+++||+-........+........ ...+.... .+..+
T Consensus 434 hl~~ifdHLn~~P~k~h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~g-si~~v 512 (698)
T KOG2340|consen 434 HLLHIFDHLNLQPSKQHDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGG-SISNV 512 (698)
T ss_pred HHHHHHHHhhcCcccccCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCC-chhhc
Confidence 777888887643221 1268888888765544443322211110 00000000 00000
Q ss_pred HhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHh-C----CCcEEEEecchhhHHHHHHHHHhcCCCc
Q psy16310 1030 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ-H----PGRTLVFCNSISSVKRLTQLLTMLKCSP 1104 (1493)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~----~~~~IVF~~s~~~~~~l~~~L~~~~~~~ 1104 (1493)
.+ .+. .....+....+....+.+..+....+.. . ..-+|||.++--.-.++..+++...+..
T Consensus 513 ----~~------~l~---Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F 579 (698)
T KOG2340|consen 513 ----GI------PLC---QVFQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISF 579 (698)
T ss_pred ----cc------hhh---hhhhheeccCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcch
Confidence 00 000 0000011111122233444444433322 1 2357999999999999999999888777
Q ss_pred cccccCCCHHHHHHHHHHHhcCCCCeEEeehhh--hccccCCCccEEEEecCCCChhHH---HHHHhccCCCC----CCC
Q psy16310 1105 LPLHASMNQRQRLKNLDRFRDQNNSILLATDVA--ARGLDIPGIEHVIHYHVPRTSEIY---IHRSGRTARAN----NEG 1175 (1493)
Q Consensus 1105 ~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~--~~GiDip~v~~VI~~d~p~s~~~y---iqr~GR~gR~g----~~G 1175 (1493)
..+|--.++.+-.+.-+.|-.|...||+-|.-+ -|-.+|.+|..||.|.+|.++.-| +.+.||+.--| ..-
T Consensus 580 ~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~ 659 (698)
T KOG2340|consen 580 VMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIF 659 (698)
T ss_pred HHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccce
Confidence 777765566666667778999999999999854 477899999999999999987655 67778875443 245
Q ss_pred eEEEEecCCCHHHHHHH
Q psy16310 1176 LTLVLIESDEIPLYIKM 1192 (1493)
Q Consensus 1176 ~~i~l~~~~e~~~~~~~ 1192 (1493)
.|.++++..|.-.+..+
T Consensus 660 t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 660 TVRILYTKYDRIRLENI 676 (698)
T ss_pred EEEEEeechhhHHHHHh
Confidence 67778877766555443
|
|
| >KOG0384|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.1e-10 Score=139.64 Aligned_cols=110 Identities=17% Similarity=0.290 Sum_probs=99.6
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhc---CCCCeEEeehhhhccccCCCccEEEEe
Q psy16310 1076 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD---QNNSILLATDVAARGLDIPGIEHVIHY 1152 (1493)
Q Consensus 1076 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~---g~~~VLVaTdv~~~GiDip~v~~VI~~ 1152 (1493)
.+.+||||..=+...+-|+++|...+++.--+-|.+....|...++.|.. ...-.|+||-+.+-|||+-..++||.|
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIF 777 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIF 777 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEe
Confidence 36799999999999999999999999999999999999999999999985 456689999999999999999999999
Q ss_pred cCCCChhHHHHHHhccCCCCCCCe--EEEEecCCC
Q psy16310 1153 HVPRTSEIYIHRSGRTARANNEGL--TLVLIESDE 1185 (1493)
Q Consensus 1153 d~p~s~~~yiqr~GR~gR~g~~G~--~i~l~~~~e 1185 (1493)
|--.++..=+|..-||-|-|+.-. .|-||+.+-
T Consensus 778 DSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 778 DSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred CCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 999999999999999999998664 455677653
|
|
| >KOG1000|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-09 Score=121.71 Aligned_cols=337 Identities=15% Similarity=0.149 Sum_probs=201.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHH
Q psy16310 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 854 (1493)
Q Consensus 775 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 854 (1493)
+++.|...| .|+|.+.+..+|..|..+++.-..|-|||+-++.-+- .+..
T Consensus 191 ~d~kLvs~L--------lPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~--yyra-------------------- 240 (689)
T KOG1000|consen 191 MDPKLVSRL--------LPFQREGVIFALERGGRILLADEMGLGKTIQALAIAR--YYRA-------------------- 240 (689)
T ss_pred cCHHHHHhh--------CchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHH--HHhh--------------------
Confidence 467777766 6999999998999888999999999999987543222 2111
Q ss_pred HHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECc
Q psy16310 855 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 934 (1493)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP 934 (1493)
..-.||+||.. |-.-+.+.+.+++.. -..+.++.++...-.. +-....|.|.+-
T Consensus 241 ---------------------EwplliVcPAs-vrftWa~al~r~lps-~~pi~vv~~~~D~~~~---~~t~~~v~ivSy 294 (689)
T KOG1000|consen 241 ---------------------EWPLLIVCPAS-VRFTWAKALNRFLPS-IHPIFVVDKSSDPLPD---VCTSNTVAIVSY 294 (689)
T ss_pred ---------------------cCcEEEEecHH-HhHHHHHHHHHhccc-ccceEEEecccCCccc---cccCCeEEEEEH
Confidence 11378999975 445677888776532 2335556665432211 112246888888
Q ss_pred HHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHh----HHhh-
Q psy16310 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN----SLNL- 1009 (1493)
Q Consensus 935 ~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~----~~~~- 1009 (1493)
+.+..+-. . ..-...+++|+||+|.+-+ +.......++..+. .-..++++|.|+.-+-.. .+..
T Consensus 295 e~ls~l~~--~---l~~~~~~vvI~DEsH~Lk~-sktkr~Ka~~dllk-----~akhvILLSGTPavSRP~elytqi~av 363 (689)
T KOG1000|consen 295 EQLSLLHD--I---LKKEKYRVVIFDESHMLKD-SKTKRTKAATDLLK-----VAKHVILLSGTPAVSRPSELYTQIRAV 363 (689)
T ss_pred HHHHHHHH--H---HhcccceEEEEechhhhhc-cchhhhhhhhhHHH-----HhhheEEecCCcccCCchhhhhhhhhh
Confidence 77643321 1 0112478999999996543 33344555555442 335789999997622111 1100
Q ss_pred -------------hccCcCccc---ccCCCchhH-------------HHHhH----hccCCCcEEeccccc--cccccc-
Q psy16310 1010 -------------KKGQSKSKK---VSKGDPSIK-------------RLQDL----LNIKSPKIVDLTEKI--GITKTL- 1053 (1493)
Q Consensus 1010 -------------~~~~~~~~~---~~~~~~~~~-------------~l~~~----~~~~~~~~~~~~~~~--~~~~~~- 1053 (1493)
......... -..+..+.. ++... +.-+...++.+.... .....+
T Consensus 364 d~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv 443 (689)
T KOG1000|consen 364 DHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGGRIDARMDDLV 443 (689)
T ss_pred cccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCCccchHHHHHH
Confidence 000000000 000111111 11111 111111111111000 000000
Q ss_pred eee--EEEe----------------cccchhhHHHHHHHh-------CCCcEEEEecchhhHHHHHHHHHhcCCCccccc
Q psy16310 1054 TES--KILC----------------KHDEKDSYLYYFILQ-------HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLH 1108 (1493)
Q Consensus 1054 ~~~--~~~~----------------~~~~k~~~l~~~l~~-------~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lh 1108 (1493)
... +... ....|...+..++.. .+.+.+|||.-....+.+...+...+++..-+.
T Consensus 444 ~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRID 523 (689)
T KOG1000|consen 444 KAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRID 523 (689)
T ss_pred HHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEec
Confidence 000 0000 011223333333333 256899999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHhcCC-CCe-EEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEE
Q psy16310 1109 ASMNQRQRLKNLDRFRDQN-NSI-LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTL 1178 (1493)
Q Consensus 1109 g~m~~~~R~~~~~~F~~g~-~~V-LVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i 1178 (1493)
|..+...|....+.|...+ +.| +++-.+++.|+++...+.||...++.++.-++|.--|+-|.|+...+.
T Consensus 524 Gst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~ 595 (689)
T KOG1000|consen 524 GSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVF 595 (689)
T ss_pred CCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceee
Confidence 9999999999999998654 444 456678899999999999999999999999999889998888765433
|
|
| >KOG1000|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-09 Score=122.21 Aligned_cols=124 Identities=15% Similarity=0.259 Sum_probs=98.0
Q ss_pred chhhHHHHHHhhC-------CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC-CCeE-EEEe
Q psy16310 531 EKDSYLYYFILQH-------PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ-NNSI-LLAT 601 (1493)
Q Consensus 531 ~k~~~l~~~l~~~-------~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g-~~~V-LVaT 601 (1493)
.|...+.+++..+ +.+.+|||+-....+.+...+...+++...+.|..+...|....+.|... ++.| +++-
T Consensus 472 aK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsI 551 (689)
T KOG1000|consen 472 AKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSI 551 (689)
T ss_pred cccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEE
Confidence 3455555555442 46899999999999999999999999999999999999999999999865 3444 4555
Q ss_pred chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCe--EEEEecCCcch
Q psy16310 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL--TVVLIESDEIP 654 (1493)
Q Consensus 602 dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~--~i~l~~~~e~~ 654 (1493)
..++.||++...+.||...++.|+.-.+|.--|+-|.|...- ++.|+..+-.+
T Consensus 552 tA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~D 606 (689)
T KOG1000|consen 552 TAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTAD 606 (689)
T ss_pred eecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchH
Confidence 677899999999999999999999888888888888776533 33344444433
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-08 Score=132.26 Aligned_cols=84 Identities=18% Similarity=0.272 Sum_probs=62.3
Q ss_pred HHhCCCcEEEEecchhhHHHHHHHHHhcCCC------ccccccCCCHHHHHHHHHHHhc----CCCCeEEee--hhhhcc
Q psy16310 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCS------PLPLHASMNQRQRLKNLDRFRD----QNNSILLAT--DVAARG 1140 (1493)
Q Consensus 1073 l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~------~~~lhg~m~~~~R~~~~~~F~~----g~~~VLVaT--dv~~~G 1140 (1493)
+...++.+|||++|-...+.++..+...|.- -.++.-.-...++..+++.|+. |.-.||+|+ ..+++|
T Consensus 518 ~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEG 597 (705)
T TIGR00604 518 SKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEG 597 (705)
T ss_pred hhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCc
Confidence 3445899999999999999999888754320 1112111112577889999975 466799999 899999
Q ss_pred ccCCC--ccEEEEecCCC
Q psy16310 1141 LDIPG--IEHVIHYHVPR 1156 (1493)
Q Consensus 1141 iDip~--v~~VI~~d~p~ 1156 (1493)
||+++ .+.||..++|-
T Consensus 598 IDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 598 IDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred cccCCCCCcEEEEEccCC
Confidence 99987 68899998884
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0389|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-09 Score=129.10 Aligned_cols=125 Identities=20% Similarity=0.201 Sum_probs=106.0
Q ss_pred CchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCC--CeEEEEechh
Q psy16310 530 DEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN--NSILLATDVA 604 (1493)
Q Consensus 530 ~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~--~~VLVaTdv~ 604 (1493)
+.|...|..+|.. .+.++|||..-.....-|-.+|..+++....+.|...-..|..++..|-..+ .-+|++|-..
T Consensus 760 SgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAG 839 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAG 839 (941)
T ss_pred hhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccC
Confidence 4566666666643 4689999999988899999999999999999999999999999999997654 3468999999
Q ss_pred hccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCC--CeEEEEecCCcch
Q psy16310 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE--GLTVVLIESDEIP 654 (1493)
Q Consensus 605 ~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~--G~~i~l~~~~e~~ 654 (1493)
+-|||+-..++||.||+..||-.-.|.--|+-|.|.. -+++.|++.+-+.
T Consensus 840 G~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 840 GFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred cceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 9999999999999999999998888888888888764 5677788776543
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.7e-08 Score=129.28 Aligned_cols=115 Identities=19% Similarity=0.294 Sum_probs=80.5
Q ss_pred HHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCC------CccccccCCCHHHHHHHHHHHhc----CCCeEEEEe--c
Q psy16310 535 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC------SPLPLHASMNQRQRLKNLDRFRD----QNNSILLAT--D 602 (1493)
Q Consensus 535 ~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~------~~~~lhg~~~~~~R~~vl~~Fr~----g~~~VLVaT--d 602 (1493)
.+..++...++++|||++|+...+.+...+...+. ....+...-...++..+++.|+. |...||+|+ .
T Consensus 513 ~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gG 592 (705)
T TIGR00604 513 LLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGG 592 (705)
T ss_pred HHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCC
Confidence 34455556689999999999999999888865432 11122222222577889999965 566799999 8
Q ss_pred hhhccCCCCC--CcEEEEecCCC-Ch------------------------------HHHHHHHhccccCCCCCeEEEEec
Q psy16310 603 VAARGLDIPG--IEHVIHYHVPR-TS------------------------------EIYIHRSGRTARANNEGLTVVLIE 649 (1493)
Q Consensus 603 v~~rGlDip~--v~~VI~yd~P~-s~------------------------------~~yiQR~GRagR~g~~G~~i~l~~ 649 (1493)
.+++|||+++ ++.||..++|. ++ ....|-+||+=|....=-+++|++
T Consensus 593 k~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD 672 (705)
T TIGR00604 593 KVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLD 672 (705)
T ss_pred cccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 8999999987 78999999884 21 122588999999775522344443
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-08 Score=126.53 Aligned_cols=107 Identities=23% Similarity=0.324 Sum_probs=89.7
Q ss_pred CcEEEEecchhhHHHHHHHHHhcCCC-cc--ccccCCCHHHHHHHHHHHhcC-CCCeEE-eehhhhccccCCCccEEEEe
Q psy16310 1078 GRTLVFCNSISSVKRLTQLLTMLKCS-PL--PLHASMNQRQRLKNLDRFRDQ-NNSILL-ATDVAARGLDIPGIEHVIHY 1152 (1493)
Q Consensus 1078 ~~~IVF~~s~~~~~~l~~~L~~~~~~-~~--~lhg~m~~~~R~~~~~~F~~g-~~~VLV-aTdv~~~GiDip~v~~VI~~ 1152 (1493)
.++||||.-+...+.+...|-....+ +. .+-|..++.+|.++.++|.++ .++||+ +|-|.+-|+|+.+.++||.+
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFv 1420 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFV 1420 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEE
Confidence 48999999999999999888665433 33 478999999999999999998 788765 67799999999999999999
Q ss_pred cCCCChhHHHHHHhccCCCCCCCeEEE--EecCC
Q psy16310 1153 HVPRTSEIYIHRSGRTARANNEGLTLV--LIESD 1184 (1493)
Q Consensus 1153 d~p~s~~~yiqr~GR~gR~g~~G~~i~--l~~~~ 1184 (1493)
+--+++-.=+|.+-||-|-|++-.+-+ |++.+
T Consensus 1421 EHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1421 EHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred ecCCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 998998888999999999997665443 44443
|
|
| >KOG0389|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.4e-09 Score=125.92 Aligned_cols=124 Identities=20% Similarity=0.213 Sum_probs=102.6
Q ss_pred cchhhHHHHHHH---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCC--CCeEEeehhh
Q psy16310 1063 DEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN--NSILLATDVA 1137 (1493)
Q Consensus 1063 ~~k~~~l~~~l~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~--~~VLVaTdv~ 1137 (1493)
..|...|-.+|. ..+.+++||..-....+-|-..|..+++...-+-|...-..|..+++.|...+ .-.|++|-+.
T Consensus 760 SgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAG 839 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAG 839 (941)
T ss_pred hhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccC
Confidence 345555555543 44789999999999999999999999999999999999999999999998755 3468899999
Q ss_pred hccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCC--eEEEEecCCCH
Q psy16310 1138 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG--LTLVLIESDEI 1186 (1493)
Q Consensus 1138 ~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G--~~i~l~~~~e~ 1186 (1493)
+-|||+-..++||.||+..++-.=.|.--||-|.|+.- ..+-|++.+-+
T Consensus 840 G~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 840 GFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred cceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcH
Confidence 99999999999999999988888888888888888754 44456655543
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.4e-09 Score=129.43 Aligned_cols=78 Identities=13% Similarity=0.168 Sum_probs=59.4
Q ss_pred ceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHH---HH-HhcCCCCEEEeCcHHHHHHHHcCCcccccc
Q psy16310 259 KLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ---LR-ILNKCPHILVATPGRLWEFIQLGHFHLTEL 334 (1493)
Q Consensus 259 ~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~---~~-~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l 334 (1493)
+..+|||+|...|..|+.+.|...+. +-.+..++++.+..+. |. ...+.+.|+|+|-..+ +..+
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv----------FaP~ 255 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV----------FAPV 255 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE----------Eecc
Confidence 45699999999999999999988653 2567888888776543 22 3344579999998766 2246
Q ss_pred ccccEEEEecCchh
Q psy16310 335 YKINYLVIDETDRM 348 (1493)
Q Consensus 335 ~~i~~lViDEAh~l 348 (1493)
.++.+|||||-|.-
T Consensus 256 ~~LgLIIvdEEhd~ 269 (665)
T PRK14873 256 EDLGLVAIWDDGDD 269 (665)
T ss_pred CCCCEEEEEcCCch
Confidence 68999999999953
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=1e-07 Score=117.82 Aligned_cols=310 Identities=14% Similarity=0.169 Sum_probs=173.4
Q ss_pred CcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccH
Q psy16310 807 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTr 886 (1493)
.-.++.||.|||||.+...++-+.+ ..+..++|+|+..+
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l-----------------------------------------~~~~~~VLvVShRr 88 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDAL-----------------------------------------KNPDKSVLVVSHRR 88 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhc-----------------------------------------cCCCCeEEEEEhHH
Confidence 3568899999999987554443222 12345799999999
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhc
Q psy16310 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 966 (1493)
Q Consensus 887 eLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll 966 (1493)
.|+.+....|+..+- .++....-.++.... ....+-++++.+.|..+-. ..+.+.++|||||+-..+
T Consensus 89 SL~~sL~~rf~~~~l-~gFv~Y~d~~~~~i~------~~~~~rLivqIdSL~R~~~------~~l~~yDvVIIDEv~svL 155 (824)
T PF02399_consen 89 SLTKSLAERFKKAGL-SGFVNYLDSDDYIID------GRPYDRLIVQIDSLHRLDG------SLLDRYDVVIIDEVMSVL 155 (824)
T ss_pred HHHHHHHHHHhhcCC-Ccceeeecccccccc------ccccCeEEEEehhhhhccc------ccccccCEEEEehHHHHH
Confidence 999999999987531 122222111111110 1124667777777754432 235568999999999876
Q ss_pred cCCChhH------HHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCC---------------Cch
Q psy16310 967 ESGHFPE------LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG---------------DPS 1025 (1493)
Q Consensus 967 ~~~~~~~------l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~---------------~~~ 1025 (1493)
..-|.+. ...++..+. .....++++-||+.....+++....+......+... ...
T Consensus 156 ~qL~S~Tm~~~~~v~~~L~~lI----~~ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~ 231 (824)
T PF02399_consen 156 NQLFSPTMRQREEVDNLLKELI----RNAKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLG 231 (824)
T ss_pred HHHhHHHHhhHHHHHHHHHHHH----HhCCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccC
Confidence 6533222 222233322 234578999999998888877554433222221111 001
Q ss_pred hHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHH--HhCCCcEEEEecchhhHHHHHHHHHhcCCC
Q psy16310 1026 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI--LQHPGRTLVFCNSISSVKRLTQLLTMLKCS 1103 (1493)
Q Consensus 1026 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l--~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~ 1103 (1493)
...+...+..... ..................... .+.......+. ...+.++-||+.|...++.++......+..
T Consensus 232 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~ 308 (824)
T PF02399_consen 232 TDTLAAALNPEDE-NADTSPTPKHSPDPTATAAIS--NDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKK 308 (824)
T ss_pred cHHHHHHhCCccc-ccccCCCcCCCCccccccccc--cchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCe
Confidence 1111111110000 000000000000000001111 11222222222 234667778999999999999999988888
Q ss_pred ccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCc--cEEEEe--cCC--CChhHHHHHHhccCCCCCCCeE
Q psy16310 1104 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI--EHVIHY--HVP--RTSEIYIHRSGRTARANNEGLT 1177 (1493)
Q Consensus 1104 ~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v--~~VI~~--d~p--~s~~~yiqr~GR~gR~g~~G~~ 1177 (1493)
+..++|.-+..+ + +. -++.+|++-|+++..|+++... +-|.-| ... .+..+..|++||+-.-. ....
T Consensus 309 Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei 381 (824)
T PF02399_consen 309 VLVLNSTDKLED---V-ES--WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEI 381 (824)
T ss_pred EEEEcCCCCccc---c-cc--ccceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeE
Confidence 988888765552 2 22 4679999999999999999643 334444 222 34556899999975543 4455
Q ss_pred EEEecCC
Q psy16310 1178 LVLIESD 1184 (1493)
Q Consensus 1178 i~l~~~~ 1184 (1493)
++.++..
T Consensus 382 ~v~~d~~ 388 (824)
T PF02399_consen 382 YVYIDAS 388 (824)
T ss_pred EEEEecc
Confidence 5555443
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.4e-08 Score=96.13 Aligned_cols=138 Identities=20% Similarity=0.182 Sum_probs=78.3
Q ss_pred cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcc
Q psy16310 805 ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 884 (1493)
.|+-.++-..+|+|||--.+--++...+ ..+.++|||.|
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i-----------------------------------------~~~~rvLvL~P 41 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAI-----------------------------------------KRRLRVLVLAP 41 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHH-----------------------------------------HTT--EEEEES
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHH-----------------------------------------HccCeEEEecc
Confidence 4555688899999999864433443222 34568999999
Q ss_pred cHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccch
Q psy16310 885 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 964 (1493)
Q Consensus 885 TreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ 964 (1493)
||.++..+++.++.. ++++.....+. ....+.-|-|+|.+.+...+..+. .+.+++++|+||||.
T Consensus 42 TRvva~em~~aL~~~----~~~~~t~~~~~-------~~~g~~~i~vMc~at~~~~~~~p~----~~~~yd~II~DEcH~ 106 (148)
T PF07652_consen 42 TRVVAEEMYEALKGL----PVRFHTNARMR-------THFGSSIIDVMCHATYGHFLLNPC----RLKNYDVIIMDECHF 106 (148)
T ss_dssp SHHHHHHHHHHTTTS----SEEEESTTSS-----------SSSSEEEEEHHHHHHHHHTSS----CTTS-SEEEECTTT-
T ss_pred cHHHHHHHHHHHhcC----CcccCceeeec-------cccCCCcccccccHHHHHHhcCcc----cccCccEEEEecccc
Confidence 999999988887543 34433211110 112344688999999888876532 356789999999996
Q ss_pred hccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 965 MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 965 ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
. |..-. .....+..+.. .....++++|||+|...
T Consensus 107 ~-Dp~sI-A~rg~l~~~~~---~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 107 T-DPTSI-AARGYLRELAE---SGEAKVIFMTATPPGSE 140 (148)
T ss_dssp --SHHHH-HHHHHHHHHHH---TTS-EEEEEESS-TT--
T ss_pred C-CHHHH-hhheeHHHhhh---ccCeeEEEEeCCCCCCC
Confidence 3 21111 11122222211 23357899999999543
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.8e-07 Score=111.24 Aligned_cols=103 Identities=16% Similarity=0.198 Sum_probs=76.1
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCC--CcEEEEec
Q psy16310 543 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG--IEHVIHYH 620 (1493)
Q Consensus 543 ~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~--v~~VI~yd 620 (1493)
.+..+-||+.|..-++.+++........+..++|.-+..+- +. -++.+|++.|.+..-|+++-. .+-|..|=
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~yv 354 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKHFDSMFAYV 354 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchhhceEEEEEe
Confidence 35677789999999999999998888899989887655522 11 477899999999999999854 44555552
Q ss_pred CC----CChHHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 621 VP----RTSEIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 621 ~P----~s~~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
-| .+..+..|++||+ |.=.....++.+....
T Consensus 355 k~~~~gpd~~s~~Q~lgRv-R~l~~~ei~v~~d~~~ 389 (824)
T PF02399_consen 355 KPMSYGPDMVSVYQMLGRV-RSLLDNEIYVYIDASG 389 (824)
T ss_pred cCCCCCCcHHHHHHHHHHH-HhhccCeEEEEEeccc
Confidence 23 4566789999994 5444566677766543
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.2e-08 Score=95.62 Aligned_cols=105 Identities=21% Similarity=0.193 Sum_probs=65.2
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcc
Q psy16310 188 ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~P 267 (1493)
.|+-.++-..+|+|||.-.+--++..-+ .++.++|||.|
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i-----------------------------------------~~~~rvLvL~P 41 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAI-----------------------------------------KRRLRVLVLAP 41 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHH-----------------------------------------HTT--EEEEES
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHH-----------------------------------------HccCeEEEecc
Confidence 3555678999999999974333433222 35578999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCch
Q psy16310 268 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 347 (1493)
Q Consensus 268 TreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ 347 (1493)
||.++..+.+.++.. ++++.....+. ....+.-|-|+|.+.+...+.+. .. +.+++++|+||||.
T Consensus 42 TRvva~em~~aL~~~----~~~~~t~~~~~-------~~~g~~~i~vMc~at~~~~~~~p-~~---~~~yd~II~DEcH~ 106 (148)
T PF07652_consen 42 TRVVAEEMYEALKGL----PVRFHTNARMR-------THFGSSIIDVMCHATYGHFLLNP-CR---LKNYDVIIMDECHF 106 (148)
T ss_dssp SHHHHHHHHHHTTTS----SEEEESTTSS-----------SSSSEEEEEHHHHHHHHHTS-SC---TTS-SEEEECTTT-
T ss_pred cHHHHHHHHHHHhcC----CcccCceeeec-------cccCCCcccccccHHHHHHhcCc-cc---ccCccEEEEecccc
Confidence 999999988887543 34433111110 11234478899999988877653 22 45799999999996
Q ss_pred h
Q psy16310 348 M 348 (1493)
Q Consensus 348 l 348 (1493)
+
T Consensus 107 ~ 107 (148)
T PF07652_consen 107 T 107 (148)
T ss_dssp -
T ss_pred C
Confidence 4
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.7e-08 Score=110.11 Aligned_cols=44 Identities=32% Similarity=0.232 Sum_probs=36.5
Q ss_pred CCcHHHHhhHHH---hhccCCcEEEEccCCCcchhHhhHHHHHHHhh
Q psy16310 790 TPTKIQSMVMPS---ALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833 (1493)
Q Consensus 790 ~pt~iQ~~~i~~---~l~~~~dvlv~apTGsGKTla~~lpil~~l~~ 833 (1493)
.|+|.|.+.+.. .+..|.++++.||||+|||+++++|++..+..
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~ 54 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRS 54 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHh
Confidence 469999995442 45678899999999999999999999877653
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.7e-08 Score=110.11 Aligned_cols=44 Identities=32% Similarity=0.232 Sum_probs=36.5
Q ss_pred CCcHHHHhhHHH---hhccCCcEEEEccCCCcchhHhhHHHHHHHhh
Q psy16310 790 TPTKIQSMVMPS---ALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833 (1493)
Q Consensus 790 ~pt~iQ~~~i~~---~l~~~~dvlv~apTGsGKTla~~lpil~~l~~ 833 (1493)
.|+|.|.+.+.. .+..|.++++.||||+|||+++++|++..+..
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~ 54 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRS 54 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHh
Confidence 469999995442 45678899999999999999999999877653
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-07 Score=109.46 Aligned_cols=46 Identities=30% Similarity=0.254 Sum_probs=37.2
Q ss_pred CCCCChHHHHhhhh---hhhccCCcEEEEccCCCchhHHHHHHHHHHHHh
Q psy16310 170 GFKTPTKIQSMVMP---SALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~---~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~ 216 (1493)
.|. |+|.|.+.+. ..+..|.++++.||||+|||++|++|++..+..
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~ 54 (289)
T smart00488 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRS 54 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHh
Confidence 343 6999998443 255678899999999999999999999977654
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-07 Score=109.46 Aligned_cols=46 Identities=30% Similarity=0.254 Sum_probs=37.2
Q ss_pred CCCCChHHHHhhhh---hhhccCCcEEEEccCCCchhHHHHHHHHHHHHh
Q psy16310 170 GFKTPTKIQSMVMP---SALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~---~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~ 216 (1493)
.|. |+|.|.+.+. ..+..|.++++.||||+|||++|++|++..+..
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~ 54 (289)
T smart00489 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRS 54 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHh
Confidence 343 6999998443 255678899999999999999999999977654
|
|
| >KOG0386|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.1e-07 Score=109.24 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=95.5
Q ss_pred HhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCC---CeEEeehhhhccccCCCccEEE
Q psy16310 1074 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN---SILLATDVAARGLDIPGIEHVI 1150 (1493)
Q Consensus 1074 ~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~---~VLVaTdv~~~GiDip~v~~VI 1150 (1493)
...+++++.||.-.....-+..+|.-.++.-..+-|.....+|-..++.|..-.. ..|.+|-..+.|+|+...+.||
T Consensus 723 katgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtvi 802 (1157)
T KOG0386|consen 723 KATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVI 802 (1157)
T ss_pred HhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEE
Confidence 3458899999999888888999998888888889999999999999999986433 4688999999999999999999
Q ss_pred EecCCCChhHHHHHHhccCCCCCCCeEEEEe
Q psy16310 1151 HYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181 (1493)
Q Consensus 1151 ~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~ 1181 (1493)
.||.-+++..+.|+--|+-|.|..-.+-++.
T Consensus 803 ifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 803 IFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred EecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 9999999999999999999999876666654
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.2e-08 Score=113.26 Aligned_cols=151 Identities=18% Similarity=0.148 Sum_probs=84.6
Q ss_pred CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEccc
Q psy16310 806 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 885 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PT 885 (1493)
.+.++++-++|+|||+..+..+. .+.... .......+|||||.
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~~-~l~~~~------------------------------------~~~~~~~~LIv~P~ 67 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALIS-YLKNEF------------------------------------PQRGEKKTLIVVPS 67 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHHH-HHHHCC------------------------------------TTSS-S-EEEEE-T
T ss_pred CCCEEEEECCCCCchhhhhhhhh-hhhhcc------------------------------------ccccccceeEeecc
Confidence 46789999999999988655443 332211 01112249999999
Q ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchh
Q psy16310 886 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRM 965 (1493)
Q Consensus 886 reLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~l 965 (1493)
.+..|+..++..+.....+++..+.|+..............+|+|+|.+.+.............-.+.++||+||+|.+
T Consensus 68 -~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~ 146 (299)
T PF00176_consen 68 -SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRL 146 (299)
T ss_dssp -TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGG
T ss_pred -chhhhhhhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccc
Confidence 8889999999998865566777666654122222222345689999999987100000000000124789999999998
Q ss_pred ccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 966 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 966 l~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
-.. .......+..+ .....+++|||+...
T Consensus 147 k~~--~s~~~~~l~~l------~~~~~~lLSgTP~~n 175 (299)
T PF00176_consen 147 KNK--DSKRYKALRKL------RARYRWLLSGTPIQN 175 (299)
T ss_dssp TTT--TSHHHHHHHCC------CECEEEEE-SS-SSS
T ss_pred ccc--ccccccccccc------ccceEEeeccccccc
Confidence 432 22334444444 256789999997643
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >KOG0386|consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.1e-07 Score=111.39 Aligned_cols=120 Identities=19% Similarity=0.209 Sum_probs=101.9
Q ss_pred cCchhhHHHHHH---hhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCC---CeEEEEec
Q psy16310 529 HDEKDSYLYYFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN---NSILLATD 602 (1493)
Q Consensus 529 ~~~k~~~l~~~l---~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~---~~VLVaTd 602 (1493)
.+.|+.+|-.+| ...+++++.||.-..-...+..+|...++....+.|.....+|-..++.|..-. ...|++|-
T Consensus 708 ~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstr 787 (1157)
T KOG0386|consen 708 VSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTR 787 (1157)
T ss_pred hccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeec
Confidence 345665555444 445789999999988888899999999999999999999999999999997643 35689999
Q ss_pred hhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEe
Q psy16310 603 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648 (1493)
Q Consensus 603 v~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~ 648 (1493)
..+.|+|+...+.||.||.-+++..+.|+--||-|.|..-.+-++.
T Consensus 788 agglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 788 AGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred ccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 9999999999999999999999999999999999999775555544
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-06 Score=116.97 Aligned_cols=114 Identities=20% Similarity=0.297 Sum_probs=98.6
Q ss_pred chhhHHHHHH----hhCCC--cEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC--CCeEEEEec
Q psy16310 531 EKDSYLYYFI----LQHPG--RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ--NNSILLATD 602 (1493)
Q Consensus 531 ~k~~~l~~~l----~~~~~--~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g--~~~VLVaTd 602 (1493)
.|...+..++ ...+. +++||++-......+..+|...++....++|.++...|...++.|..+ ..-+|++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5566665555 22344 899999999999999999999998899999999999999999999986 456677888
Q ss_pred hhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeE
Q psy16310 603 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644 (1493)
Q Consensus 603 v~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~ 644 (1493)
+++.|+++-..++||+||+..++....|...|+-|.|....+
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v 813 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPV 813 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCccee
Confidence 999999999999999999999999999999999998876543
|
|
| >KOG0921|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.2e-07 Score=110.10 Aligned_cols=108 Identities=23% Similarity=0.344 Sum_probs=89.7
Q ss_pred CCcEEEEecchhhHHHHHHHHHhc-------CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEE
Q psy16310 544 PGRTLVFCNSISSVKRLTQLLTML-------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 616 (1493)
Q Consensus 544 ~~~~IIF~~s~~~a~~L~~~L~~~-------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~V 616 (1493)
++-++||.+.......|..+|-.. ...+...|+.+...++.++++....|..++++.|.+++.-+.|-++.+|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 578999999999999998888543 4667889999999999999999999999999999999999999888888
Q ss_pred EEecCC------------------CChHHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 617 IHYHVP------------------RTSEIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 617 I~yd~P------------------~s~~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
|.-+.- .+....+||.||+||. ++|.|+.+.+.--
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ar 775 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRAR 775 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHHH
Confidence 753321 2344568999999996 5899999886543
|
|
| >KOG1002|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.1e-06 Score=96.33 Aligned_cols=107 Identities=15% Similarity=0.171 Sum_probs=83.5
Q ss_pred CcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC-CCeE-EEEechhhccCCCCCCcEEEEecCC
Q psy16310 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ-NNSI-LLATDVAARGLDIPGIEHVIHYHVP 622 (1493)
Q Consensus 545 ~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g-~~~V-LVaTdv~~rGlDip~v~~VI~yd~P 622 (1493)
-+.|||..-......+.-.|...|+.+.-+.|+|++..|..+++.|.+. .+.| ||+--..+..+++-...+|++.|+=
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 4779998877777777778889999999999999999999999999875 4454 5566666788999999999999998
Q ss_pred CChHHHHHHHhccccCCC--CCeEEEEecCC
Q psy16310 623 RTSEIYIHRSGRTARANN--EGLTVVLIESD 651 (1493)
Q Consensus 623 ~s~~~yiQR~GRagR~g~--~G~~i~l~~~~ 651 (1493)
+|+.--.|.--|.-|.|. +-.++.|+-..
T Consensus 719 WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred ccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 888766665555555553 45566665443
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-06 Score=108.13 Aligned_cols=157 Identities=21% Similarity=0.170 Sum_probs=98.7
Q ss_pred hHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCC
Q psy16310 494 EEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCS 570 (1493)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~ 570 (1493)
.+...+..++.-.+........+........+......|...+...+.. .+.|+||-+.+.+..+.+++.|...+++
T Consensus 376 te~~EF~~iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~ 455 (822)
T COG0653 376 TEEEEFDVIYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIP 455 (822)
T ss_pred hhhhhhhhccCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCC
Confidence 3333444444444433333333333233333444455666666555533 3789999999999999999999999998
Q ss_pred ccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCc-----------EEEEecCCCChHHHHHHHhccccCC
Q psy16310 571 PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIE-----------HVIHYHVPRTSEIYIHRSGRTARAN 639 (1493)
Q Consensus 571 ~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~-----------~VI~yd~P~s~~~yiQR~GRagR~g 639 (1493)
-.++.+.-. .|..-+-.+.--.-.|-|||++|+||-||.--. +||-..--.|-.-=-|-.||+||.|
T Consensus 456 h~VLNAk~h--~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG 533 (822)
T COG0653 456 HNVLNAKNH--AREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG 533 (822)
T ss_pred ceeeccccH--HHHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC
Confidence 877777654 333333333333446889999999999994222 3333332233333348999999999
Q ss_pred CCCeEEEEecCCc
Q psy16310 640 NEGLTVVLIESDE 652 (1493)
Q Consensus 640 ~~G~~i~l~~~~e 652 (1493)
.+|.+-.+++-+|
T Consensus 534 DpG~S~F~lSleD 546 (822)
T COG0653 534 DPGSSRFYLSLED 546 (822)
T ss_pred CcchhhhhhhhHH
Confidence 9998877765544
|
|
| >KOG4439|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.8e-06 Score=102.70 Aligned_cols=103 Identities=12% Similarity=0.186 Sum_probs=80.6
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhc--CCCeEE-EEechhhccCCCCCCcEEEEec
Q psy16310 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD--QNNSIL-LATDVAARGLDIPGIEHVIHYH 620 (1493)
Q Consensus 544 ~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~--g~~~VL-VaTdv~~rGlDip~v~~VI~yd 620 (1493)
..+++|...-..-..-+...|...|.....+||.....+|..+++.|.. |..+|+ +.=...+-|||+-+.+|+|..|
T Consensus 746 keK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvD 825 (901)
T KOG4439|consen 746 KEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVD 825 (901)
T ss_pred cceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEe
Confidence 3444444333333455667788889999999999999999999999953 545554 5555666999999999999999
Q ss_pred CCCChHHHHHHHhccccCCCCCeEEE
Q psy16310 621 VPRTSEIYIHRSGRTARANNEGLTVV 646 (1493)
Q Consensus 621 ~P~s~~~yiQR~GRagR~g~~G~~i~ 646 (1493)
+-+|+.-=-|.+-|.-|.|....+++
T Consensus 826 lHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 826 LHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred cccCHHHHHHHHHHHHHhcccCceEE
Confidence 99999999999999999997654443
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.3e-05 Score=103.78 Aligned_cols=140 Identities=20% Similarity=0.150 Sum_probs=89.1
Q ss_pred CcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccH
Q psy16310 807 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTr 886 (1493)
+.-+|.=-||||||+...-.+- .++. ....+.++||+-.+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~-~l~~---------------------------------------~~~~~~v~fvvDR~ 313 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLAR-LLLE---------------------------------------LPKNPKVLFVVDRK 313 (962)
T ss_pred CceEEEeecCCchHHHHHHHHH-HHHh---------------------------------------ccCCCeEEEEechH
Confidence 4678899999999998543322 2211 13456799999999
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCC-cEEEECcHHHHHHHHhCcCccccccceeEEEecccchh
Q psy16310 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP-HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRM 965 (1493)
Q Consensus 887 eLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~-~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~l 965 (1493)
+|-.|+.+.|..++....... ...+...-...+.... .|+|+|-+.|...+........ -.+=-++|+|||||-
T Consensus 314 dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~-~~~~ivvI~DEaHRS 388 (962)
T COG0610 314 DLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELL-KRKNVVVIIDEAHRS 388 (962)
T ss_pred HHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhcCCCcEEEEEecccchhhhccccccc-CCCcEEEEEechhhc
Confidence 999999999999874432221 2234444444555433 7999999999887765411111 112237899999982
Q ss_pred ccCCChhHHHHHHHHhcccCCCCCceEEEEecccc
Q psy16310 966 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 1000 (1493)
Q Consensus 966 l~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~ 1000 (1493)
+.|+ .-..+-..+ ++...++||.|+-
T Consensus 389 -Q~G~--~~~~~~~~~------~~a~~~gFTGTPi 414 (962)
T COG0610 389 -QYGE--LAKLLKKAL------KKAIFIGFTGTPI 414 (962)
T ss_pred -cccH--HHHHHHHHh------ccceEEEeeCCcc
Confidence 3232 222222222 4478999999985
|
|
| >KOG4439|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.3e-06 Score=99.58 Aligned_cols=103 Identities=13% Similarity=0.194 Sum_probs=85.0
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhc--CCCC-eEEeehhhhccccCCCccEEEEec
Q psy16310 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD--QNNS-ILLATDVAARGLDIPGIEHVIHYH 1153 (1493)
Q Consensus 1077 ~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~--g~~~-VLVaTdv~~~GiDip~v~~VI~~d 1153 (1493)
..+++|...-.....-+...|...|.....+||.....+|..+++.|.. |..+ .|++=.+.+.|+|+-+.+|+|..|
T Consensus 746 keK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvD 825 (901)
T KOG4439|consen 746 KEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVD 825 (901)
T ss_pred cceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEe
Confidence 4556665555555666777888889999999999999999999999974 4344 456677888999999999999999
Q ss_pred CCCChhHHHHHHhccCCCCCCCeEEE
Q psy16310 1154 VPRTSEIYIHRSGRTARANNEGLTLV 1179 (1493)
Q Consensus 1154 ~p~s~~~yiqr~GR~gR~g~~G~~i~ 1179 (1493)
+.+++..=-|.+-|.-|.|..-.+++
T Consensus 826 lHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 826 LHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred cccCHHHHHHHHHHHHHhcccCceEE
Confidence 99999999999999999998776655
|
|
| >KOG1002|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.3e-06 Score=93.42 Aligned_cols=122 Identities=15% Similarity=0.162 Sum_probs=96.5
Q ss_pred cchhhHHHH---HHHhC--CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC-CCC-eEEeeh
Q psy16310 1063 DEKDSYLYY---FILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ-NNS-ILLATD 1135 (1493)
Q Consensus 1063 ~~k~~~l~~---~l~~~--~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g-~~~-VLVaTd 1135 (1493)
..|+.+|.. ++... .-+.|||..-....+.+.-.|...|+.+.-+-|+|++..|..+++.|++. .+. .||+-.
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec
Confidence 345555543 33333 45789999999999999999999999999999999999999999999975 344 466777
Q ss_pred hhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCC--CCeEEEEecCC
Q psy16310 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN--EGLTLVLIESD 1184 (1493)
Q Consensus 1136 v~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~ 1184 (1493)
+.+..+++-...+|+.+|+-+++..-+|.-.|.-|-|+ +=..+.|+.++
T Consensus 699 AGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 699 AGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred cCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 77788999999999999999999888777777777764 45566666444
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.6e-07 Score=107.29 Aligned_cols=122 Identities=20% Similarity=0.171 Sum_probs=71.4
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcc
Q psy16310 188 ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~P 267 (1493)
..+..|++..+|+|||+..+..+. .+.... .......+|||||
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~------------------------------------~~~~~~~~LIv~P 66 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALIS-YLKNEF------------------------------------PQRGEKKTLIVVP 66 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHH-HHHHCC------------------------------------TTSS-S-EEEEE-
T ss_pred CCCCEEEEECCCCCchhhhhhhhh-hhhhcc------------------------------------ccccccceeEeec
Confidence 346789999999999998665443 332210 0011124999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCc-cccccccccEEEEecCc
Q psy16310 268 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF-HLTELYKINYLVIDETD 346 (1493)
Q Consensus 268 TreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~-~~~~l~~i~~lViDEAh 346 (1493)
. .+..|+...+..+.....+++..+.|...............+|+|+|.+.+...-..... .+.. .++++||+||+|
T Consensus 67 ~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~-~~~~~vIvDEaH 144 (299)
T PF00176_consen 67 S-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ-IKWDRVIVDEAH 144 (299)
T ss_dssp T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT-SEEEEEEETTGG
T ss_pred c-chhhhhhhhhccccccccccccccccccccccccccccccceeeecccccccccccccccccccc-ccceeEEEeccc
Confidence 9 888999999999886546677766666512222222334568999999998710000000 0111 147899999999
Q ss_pred hh
Q psy16310 347 RM 348 (1493)
Q Consensus 347 ~l 348 (1493)
.+
T Consensus 145 ~~ 146 (299)
T PF00176_consen 145 RL 146 (299)
T ss_dssp GG
T ss_pred cc
Confidence 88
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.9e-06 Score=107.66 Aligned_cols=52 Identities=19% Similarity=0.128 Sum_probs=40.5
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 364 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l 364 (1493)
..|+++||..|..-|-.+.+... .|..|||||||++.+..-...+..++..-
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~---~itgiiv~~Ahr~~~~~~eaFI~rlyr~~ 59 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPE---LITGILVLRADRIIESSQEAFILRLYRQK 59 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHH---HccEEEEeecccccccccHHHHHHHHHHh
Confidence 37999999999877766666544 79999999999998776666666666543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.2e-05 Score=98.30 Aligned_cols=121 Identities=24% Similarity=0.201 Sum_probs=83.3
Q ss_pred ccchhhHHHHHHH---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhh
Q psy16310 1062 HDEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138 (1493)
Q Consensus 1062 ~~~k~~~l~~~l~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~ 1138 (1493)
...|....+..+. ..+.|+||-+.++...+.+...|...|++-.++.+.-. .|+.-+-.+....-.|-|||++|+
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG~~gaVTiATNMAG 488 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAGQPGAVTIATNMAG 488 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcCCCCcccccccccc
Confidence 3445555555443 34889999999999999999999999998777766543 444434444434456889999999
Q ss_pred ccccCCCcc-----------EEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCC
Q psy16310 1139 RGLDIPGIE-----------HVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184 (1493)
Q Consensus 1139 ~GiDip~v~-----------~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 1184 (1493)
||-||.=-. +||--.-..|..-=-|-.||+||-|-+|.+-.+++-.
T Consensus 489 RGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSle 545 (822)
T COG0653 489 RGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 545 (822)
T ss_pred CCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhH
Confidence 999994222 3442222223333347789999999999988777543
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=98.35 E-value=4e-06 Score=93.47 Aligned_cols=131 Identities=17% Similarity=0.236 Sum_probs=95.2
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..|++.|..++- ++..|+ |+...||=|||++..+|+.-..+.
T Consensus 76 ~~p~~vQll~~l-~L~~G~--laEm~TGEGKTli~~l~a~~~AL~----------------------------------- 117 (266)
T PF07517_consen 76 LRPYDVQLLGAL-ALHKGR--LAEMKTGEGKTLIAALPAALNALQ----------------------------------- 117 (266)
T ss_dssp ----HHHHHHHH-HHHTTS--EEEESTTSHHHHHHHHHHHHHHTT-----------------------------------
T ss_pred CcccHHHHhhhh-hcccce--eEEecCCCCcHHHHHHHHHHHHHh-----------------------------------
Confidence 478999999984 665654 999999999999998887655433
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHH-HHHHhCcCc
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW-EFIQLGHFH 947 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~-~~l~~~~~~ 947 (1493)
|..|=|++...-||..=++.+..+...+|+.+++++++.+........ .+||+.+|...+. |.|+.....
T Consensus 118 -------G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~ 188 (266)
T PF07517_consen 118 -------GKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLAL 188 (266)
T ss_dssp -------SS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-S
T ss_pred -------cCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhh
Confidence 335889999999999999999999999999999999988765433333 3589999999885 445432211
Q ss_pred cc---cccceeEEEecccchhc
Q psy16310 948 LT---ELYKINYLVIDETDRMI 966 (1493)
Q Consensus 948 ~~---~l~~l~~lVlDEah~ll 966 (1493)
.. ....+.++||||||.|+
T Consensus 189 ~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 189 SKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp SGGG--SSSSSEEEECTHHHHT
T ss_pred ccchhccCCCCEEEEeccceEE
Confidence 11 13568899999999875
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.2e-06 Score=93.29 Aligned_cols=133 Identities=17% Similarity=0.250 Sum_probs=95.5
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
.|+ .|+++|.-++- +|..|+ |+...||-|||++..+|+.-..+
T Consensus 74 ~g~-~p~~vQll~~l-~L~~G~--laEm~TGEGKTli~~l~a~~~AL--------------------------------- 116 (266)
T PF07517_consen 74 LGL-RPYDVQLLGAL-ALHKGR--LAEMKTGEGKTLIAALPAALNAL--------------------------------- 116 (266)
T ss_dssp TS-----HHHHHHHH-HHHTTS--EEEESTTSHHHHHHHHHHHHHHT---------------------------------
T ss_pred cCC-cccHHHHhhhh-hcccce--eEEecCCCCcHHHHHHHHHHHHH---------------------------------
Confidence 355 69999999884 665553 88999999999999888764432
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHH-HHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW-EFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~-~~l~~~ 327 (1493)
.|..|=|++..--||..=++.+..+...+|+++++++++.+......... ++|+.+|...|. +.|...
T Consensus 117 ---------~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~ 185 (266)
T PF07517_consen 117 ---------QGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDN 185 (266)
T ss_dssp ---------TSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHT
T ss_pred ---------hcCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHH
Confidence 34568999999999999999999999999999999999988655444333 489999999875 345432
Q ss_pred Ccc---ccccccccEEEEecCchhh
Q psy16310 328 HFH---LTELYKINYLVIDETDRMI 349 (1493)
Q Consensus 328 ~~~---~~~l~~i~~lViDEAh~ll 349 (1493)
... ....+.+.++||||||.++
T Consensus 186 ~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 186 LALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HhhccchhccCCCCEEEEeccceEE
Confidence 111 1113578999999999986
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >KOG0388|consensus | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.7e-05 Score=94.06 Aligned_cols=108 Identities=16% Similarity=0.197 Sum_probs=95.6
Q ss_pred HHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCC-eEEeehhhhccccCCCcc
Q psy16310 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS-ILLATDVAARGLDIPGIE 1147 (1493)
Q Consensus 1069 l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~-VLVaTdv~~~GiDip~v~ 1147 (1493)
|+-.+...+.++|+|+.-.+..+.+..+|...++.-.-+.|.....+|..++..|....+- .|++|-+.+-||++...+
T Consensus 1036 LL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAAD 1115 (1185)
T KOG0388|consen 1036 LLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAAD 1115 (1185)
T ss_pred HHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccc
Confidence 3333455688999999999999999999999999999999999999999999999986654 588999999999999999
Q ss_pred EEEEecCCCChhHHHHHHhccCCCCCCCe
Q psy16310 1148 HVIHYHVPRTSEIYIHRSGRTARANNEGL 1176 (1493)
Q Consensus 1148 ~VI~~d~p~s~~~yiqr~GR~gR~g~~G~ 1176 (1493)
.||.||.-.++..-.|...||-|-|..-.
T Consensus 1116 TViFYdSDWNPT~D~QAMDRAHRLGQTrd 1144 (1185)
T KOG0388|consen 1116 TVIFYDSDWNPTADQQAMDRAHRLGQTRD 1144 (1185)
T ss_pred eEEEecCCCCcchhhHHHHHHHhccCccc
Confidence 99999999999999999999999987544
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.1e-05 Score=107.09 Aligned_cols=117 Identities=21% Similarity=0.294 Sum_probs=100.1
Q ss_pred chhhHHHHHH----HhCCC--cEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC--CCCeEEeeh
Q psy16310 1064 EKDSYLYYFI----LQHPG--RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ--NNSILLATD 1135 (1493)
Q Consensus 1064 ~k~~~l~~~l----~~~~~--~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g--~~~VLVaTd 1135 (1493)
.|...+..++ ...+. +++||++.....+.+...|...++....++|.++...|...++.|.++ ..-++++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4555555555 22345 899999999999999999999998889999999999999999999986 455677888
Q ss_pred hhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEE
Q psy16310 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180 (1493)
Q Consensus 1136 v~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l 1180 (1493)
+.+.|+++-..++||+||+..++....|...|+-|.|+...+.++
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 999999999999999999999999999999999999876655443
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.6e-06 Score=104.70 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=58.1
Q ss_pred CCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCC--CCCC--------eEEEEecCCCHHHHHHHHHhc
Q psy16310 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA--NNEG--------LTLVLIESDEIPLYIKMFNSL 1196 (1493)
Q Consensus 1127 ~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~--g~~G--------~~i~l~~~~e~~~~~~~~~~~ 1196 (1493)
..+.+++-+++.+|.|.|+|-.+...+-..|...-.|.+||.-|. ...| .-.++++..+..+...+.+.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 678999999999999999999999999888888899999999984 1122 223345667777888888887
Q ss_pred ccc
Q psy16310 1197 EKK 1199 (1493)
Q Consensus 1197 ~~~ 1199 (1493)
+..
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 654
|
|
| >KOG1015|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00032 Score=86.17 Aligned_cols=121 Identities=18% Similarity=0.238 Sum_probs=99.2
Q ss_pred ccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhc----------------------CCCccccccCCCH
Q psy16310 526 LCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTML----------------------KCSPLPLHASMNQ 580 (1493)
Q Consensus 526 ~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~----------------------~~~~~~lhg~~~~ 580 (1493)
....+.|..+|+.+|.. .+.+.|||..|..+...+-.+|... |...+.+.|..+.
T Consensus 1121 v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s 1200 (1567)
T KOG1015|consen 1121 VLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTS 1200 (1567)
T ss_pred hhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccH
Confidence 33456777778877754 4789999999999999888888543 3344568889999
Q ss_pred HHHHHHHHHHhcCC----CeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEE
Q psy16310 581 RQRLKNLDRFRDQN----NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646 (1493)
Q Consensus 581 ~~R~~vl~~Fr~g~----~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~ 646 (1493)
.+|......|.+-. .-.||+|-+.+-|||+-..+.||.||..+|+.--+|.+=|+-|.|...-||+
T Consensus 1201 ~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyi 1270 (1567)
T KOG1015|consen 1201 QSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYI 1270 (1567)
T ss_pred HHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceee
Confidence 99999999997632 2468999999999999999999999999999999999999999997654443
|
|
| >KOG0921|consensus | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.2e-06 Score=100.96 Aligned_cols=105 Identities=24% Similarity=0.360 Sum_probs=86.3
Q ss_pred CCcEEEEecchhhHHHHHHHHHhc-------CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEE
Q psy16310 1077 PGRTLVFCNSISSVKRLTQLLTML-------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 1149 (1493)
Q Consensus 1077 ~~~~IVF~~s~~~~~~l~~~L~~~-------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~V 1149 (1493)
++-++||.+--.....|...|... .+.++..|+.+...+..++.+....|..++++.|.+++.-+-+.++..|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 678999999998888888877544 4678889999998888899888889999999999999999999998888
Q ss_pred EEecCC------------------CChhHHHHHHhccCCCCCCCeEEEEec
Q psy16310 1150 IHYHVP------------------RTSEIYIHRSGRTARANNEGLTLVLIE 1182 (1493)
Q Consensus 1150 I~~d~p------------------~s~~~yiqr~GR~gR~g~~G~~i~l~~ 1182 (1493)
|..+.- .+....+||.||+||. +.|.|..++.
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCS 772 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccH
Confidence 753321 2345679999999996 6888888874
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00014 Score=89.48 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=61.0
Q ss_pred CCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCC--CCCCe-----------EEEEecCCCHHHHHHH
Q psy16310 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA--NNEGL-----------TLVLIESDEIPLYIKM 1192 (1493)
Q Consensus 1126 g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~--g~~G~-----------~i~l~~~~e~~~~~~~ 1192 (1493)
...+.+++-.++-+|.|=|+|=.++-.....|..+=+|.+||.-|- ...|. -.+++...+......+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999994 33343 3346677778888888
Q ss_pred HHhccccC
Q psy16310 1193 FNSLEKKV 1200 (1493)
Q Consensus 1193 ~~~~~~~~ 1200 (1493)
.+.+....
T Consensus 562 qkEI~~~s 569 (985)
T COG3587 562 QKEINDES 569 (985)
T ss_pred HHHHHHhh
Confidence 77776643
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00014 Score=93.50 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=41.1
Q ss_pred CCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccC
Q psy16310 594 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 638 (1493)
Q Consensus 594 ~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~ 638 (1493)
..+.+++-+.+.+|.|-|+|-.+....-..|...-.|.+||.-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 578999999999999999999988899889999999999998884
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.1e-05 Score=81.64 Aligned_cols=113 Identities=23% Similarity=0.351 Sum_probs=76.5
Q ss_pred HHHHhhCCCcEEEEecchhhHHHHHHHHHhcCC--CccccccCCCHHHHHHHHHHHhcCCCeEEEEec--hhhccCCCCC
Q psy16310 537 YYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC--SPLPLHASMNQRQRLKNLDRFRDQNNSILLATD--VAARGLDIPG 612 (1493)
Q Consensus 537 ~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~--~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTd--v~~rGlDip~ 612 (1493)
..++...++++|||++|+...+.+...+..... ....+.. ....+..+++.|+.+...||+|+. .+.+|||+|+
T Consensus 2 ~~l~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 2 LELISAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHHCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred hHHHhcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 345566789999999999999999998876532 2222332 356778999999999999999999 9999999996
Q ss_pred --CcEEEEecCCC----Ch--------------------------HHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 613 --IEHVIHYHVPR----TS--------------------------EIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 613 --v~~VI~yd~P~----s~--------------------------~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
++.||...+|. ++ ....|-+||+-|.... ++++++-++.
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D-~g~i~llD~R 150 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDD-YGVIILLDSR 150 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT--EEEEEEESGG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCC-cEEEEEEcCc
Confidence 88999998882 21 1125889999998754 4444443433
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00032 Score=93.26 Aligned_cols=114 Identities=21% Similarity=0.168 Sum_probs=74.0
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccH
Q psy16310 190 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTr 269 (1493)
+.-+|+=-||||||+.-+-. -+.+.. ....+.++|||..+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~-A~~l~~---------------------------------------~~~~~~v~fvvDR~ 313 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKL-ARLLLE---------------------------------------LPKNPKVLFVVDRK 313 (962)
T ss_pred CceEEEeecCCchHHHHHHH-HHHHHh---------------------------------------ccCCCeEEEEechH
Confidence 45788999999999973322 222221 13457899999999
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCC-CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchh
Q psy16310 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC-PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRM 348 (1493)
Q Consensus 270 eLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~-~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~l 348 (1493)
+|-.|..+.|..+....... . ...+...-...+..+ ..|||+|-+.|-..+........ -.+=-++|+||||+-
T Consensus 314 dLd~Q~~~~f~~~~~~~~~~-~---~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~-~~~~ivvI~DEaHRS 388 (962)
T COG0610 314 DLDDQTSDEFQSFGKVAFND-P---KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELL-KRKNVVVIIDEAHRS 388 (962)
T ss_pred HHHHHHHHHHHHHHHhhhhc-c---cccCHHHHHHHHhcCCCcEEEEEecccchhhhccccccc-CCCcEEEEEechhhc
Confidence 99999999999886432221 1 333444444444433 37999999999887765411111 112246899999975
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=8.7e-05 Score=78.27 Aligned_cols=112 Identities=24% Similarity=0.352 Sum_probs=76.1
Q ss_pred HHHHHhCCCcEEEEecchhhHHHHHHHHHhcCC--CccccccCCCHHHHHHHHHHHhcCCCCeEEeeh--hhhccccCCC
Q psy16310 1070 YYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC--SPLPLHASMNQRQRLKNLDRFRDQNNSILLATD--VAARGLDIPG 1145 (1493)
Q Consensus 1070 ~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~--~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTd--v~~~GiDip~ 1145 (1493)
..++...++.+|||++|....+.+...+...+. ....+.- ....+..+++.|+.++..||+|+. .+++|||+|+
T Consensus 2 ~~l~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 2 LELISAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHHCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred hHHHhcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 345566789999999999999999999987542 2222332 355778999999999999999999 9999999996
Q ss_pred --ccEEEEecCCC----Ch--------------------------hHHHHHHhccCCCCCCCeEEEEecC
Q psy16310 1146 --IEHVIHYHVPR----TS--------------------------EIYIHRSGRTARANNEGLTLVLIES 1183 (1493)
Q Consensus 1146 --v~~VI~~d~p~----s~--------------------------~~yiqr~GR~gR~g~~G~~i~l~~~ 1183 (1493)
++.||...+|- ++ ....|.+||+-|....=.+++++++
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 77899988873 21 1135889999998664444444433
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0025 Score=82.49 Aligned_cols=67 Identities=18% Similarity=0.094 Sum_probs=46.8
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEeccccc
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~ 1001 (1493)
..|+++||..|...|-.+.+. +..+..|||||||++.+..-...+..+...- +...-+.+|||.+..
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~---~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~-----n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIP---PELITGILVLRADRIIESSQEAFILRLYRQK-----NKTGFIKAFSDNPEA 74 (814)
T ss_pred CCEEEEechhhHhHHhcCCCC---HHHccEEEEeecccccccccHHHHHHHHHHh-----CCCcceEEecCCCcc
Confidence 379999999998777666654 4578999999999987655444444444332 234457888888764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00047 Score=84.96 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=41.9
Q ss_pred CCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhcccc
Q psy16310 593 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637 (1493)
Q Consensus 593 g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR 637 (1493)
...+.+++-.++-+|.|=|+|=.++-.....|..+=+|.+||.-|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLR 526 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLR 526 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhcccee
Confidence 347899999999999999999999999999999999999999878
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00077 Score=75.82 Aligned_cols=73 Identities=15% Similarity=0.281 Sum_probs=47.2
Q ss_pred ChHHHHhhhhhhhccCCc-EEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 174 PTKIQSMVMPSALLARKD-IVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 174 pt~iQ~~~i~~~l~~~~d-viv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
+.+.|.+++..++ .... .+|.||.|||||.+.+- ++..++....
T Consensus 2 ln~~Q~~Ai~~~~-~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~--------------------------------- 46 (236)
T PF13086_consen 2 LNESQREAIQSAL-SSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFK--------------------------------- 46 (236)
T ss_dssp --HHHHHHHHHHC-TSSE-EEEE-STTSSHHHHHHH-HHHHH--------------------------------------
T ss_pred CCHHHHHHHHHHH-cCCCCEEEECCCCCChHHHHHH-HHHHhccchh---------------------------------
Confidence 6788999997555 5556 89999999999965332 3333321000
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHH
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILD 281 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~ 281 (1493)
......+.++|+++||..-+.++...+.+
T Consensus 47 ~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 47 SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 01124556799999999999999988877
|
|
| >KOG0391|consensus | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00058 Score=85.66 Aligned_cols=123 Identities=20% Similarity=0.279 Sum_probs=101.2
Q ss_pred ccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCC-C-eEEEEech
Q psy16310 526 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN-N-SILLATDV 603 (1493)
Q Consensus 526 ~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~-~-~VLVaTdv 603 (1493)
.|..-..+.+|+..|...+.++|||+.-......|-.+|+..|+....+.|....++|...+++|.... + ..+++|-.
T Consensus 1258 DcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrS 1337 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRS 1337 (1958)
T ss_pred ccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccC
Confidence 333344556677777788999999999999999999999999999999999999999999999997644 3 45788999
Q ss_pred hhccCCCCCCcEEEEecCCCChH------HHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 604 AARGLDIPGIEHVIHYHVPRTSE------IYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 604 ~~rGlDip~v~~VI~yd~P~s~~------~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
.+.|||+-+.+.||.||--+|+. +..||+|+| +.-+.|.|++..-
T Consensus 1338 ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt----RDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1338 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT----RDVHIYRLISERT 1388 (1958)
T ss_pred CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc----cceEEEEeeccch
Confidence 99999999999999999988864 567777773 3467788887654
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.001 Score=74.83 Aligned_cols=73 Identities=15% Similarity=0.291 Sum_probs=47.4
Q ss_pred CcHHHHhhHHHhhccCCc-EEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 791 PTKIQSMVMPSALLARKD-IVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 791 pt~iQ~~~i~~~l~~~~d-vlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
+.+.|..|+..++ .... .++.||.|||||.+.. -++..++....
T Consensus 2 ln~~Q~~Ai~~~~-~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~--------------------------------- 46 (236)
T PF13086_consen 2 LNESQREAIQSAL-SSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFK--------------------------------- 46 (236)
T ss_dssp --HHHHHHHHHHC-TSSE-EEEE-STTSSHHHHHH-HHHHHH--------------------------------------
T ss_pred CCHHHHHHHHHHH-cCCCCEEEECCCCCChHHHHH-HHHHHhccchh---------------------------------
Confidence 5788999997655 4456 8999999999995433 33333311000
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHH
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILD 898 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~ 898 (1493)
......+.++|+++||..-+.++.+.+.+
T Consensus 47 ~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 47 SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 00134566899999999999999998877
|
|
| >KOG0391|consensus | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.002 Score=81.20 Aligned_cols=125 Identities=21% Similarity=0.294 Sum_probs=100.3
Q ss_pred EEecccchhhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCC--CeEEeeh
Q psy16310 1058 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN--SILLATD 1135 (1493)
Q Consensus 1058 ~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~--~VLVaTd 1135 (1493)
+.|..-.....|+.-|..++.++|||..-.+..+-|..+|+..|+--.-+.|...-++|...+++|..... -.+++|-
T Consensus 1257 yDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTr 1336 (1958)
T KOG0391|consen 1257 YDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTR 1336 (1958)
T ss_pred cccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEecc
Confidence 45555566666677777789999999999999999999999999988899999999999999999987543 3577899
Q ss_pred hhhccccCCCccEEEEecCCCChh------HHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1136 VAARGLDIPGIEHVIHYHVPRTSE------IYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1136 v~~~GiDip~v~~VI~~d~p~s~~------~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
..+.|||+-+.++||.||--+++. +..||||+| +.=+.|-|++..-+
T Consensus 1337 SggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt----RDVHIYRLISe~TI 1389 (1958)
T KOG0391|consen 1337 SGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT----RDVHIYRLISERTI 1389 (1958)
T ss_pred CCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc----cceEEEEeeccchH
Confidence 999999999999999999887764 455666653 23455666665543
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00098 Score=71.58 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=32.6
Q ss_pred CCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHh
Q psy16310 172 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216 (1493)
Q Consensus 172 ~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~ 216 (1493)
...++.|..++. ++....-+++.||.|||||+.++..+++.+..
T Consensus 3 ~p~~~~Q~~~~~-al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~ 46 (205)
T PF02562_consen 3 KPKNEEQKFALD-ALLNNDLVIVNGPAGTGKTFLALAAALELVKE 46 (205)
T ss_dssp ---SHHHHHHHH-HHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHH-HHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 456889999997 66677789999999999999998888887743
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0025 Score=68.55 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=32.2
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~ 833 (1493)
-.|+-|..++. ++....-+++.||.|||||+.++..+++.+..
T Consensus 4 p~~~~Q~~~~~-al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~ 46 (205)
T PF02562_consen 4 PKNEEQKFALD-ALLNNDLVIVNGPAGTGKTFLALAAALELVKE 46 (205)
T ss_dssp --SHHHHHHHH-HHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHH-HHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 45789999997 55577788999999999999998888887743
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >KOG1802|consensus | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0043 Score=74.30 Aligned_cols=84 Identities=19% Similarity=0.168 Sum_probs=63.4
Q ss_pred HHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHH
Q psy16310 782 ALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 861 (1493)
Q Consensus 782 ~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (1493)
.+...|+.++..-|..|..+.| +..=.|+++|.|+|||.+..-.+++.+ .
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL-~rplsLIQGPPGTGKTvtsa~IVyhl~-~---------------------------- 451 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVL-QRPLSLIQGPPGTGKTVTSATIVYHLA-R---------------------------- 451 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHH-cCCceeeecCCCCCceehhHHHHHHHH-H----------------------------
Confidence 4455678888999999998666 555678999999999998665554433 1
Q ss_pred hhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEE
Q psy16310 862 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVV 911 (1493)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~ 911 (1493)
.....+||.+|+..-+.|+++.+.+.+ ++|.-+.
T Consensus 452 ------------~~~~~VLvcApSNiAVDqLaeKIh~tg----LKVvRl~ 485 (935)
T KOG1802|consen 452 ------------QHAGPVLVCAPSNIAVDQLAEKIHKTG----LKVVRLC 485 (935)
T ss_pred ------------hcCCceEEEcccchhHHHHHHHHHhcC----ceEeeee
Confidence 233469999999999999999887754 6666554
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0026 Score=68.99 Aligned_cols=64 Identities=20% Similarity=0.157 Sum_probs=43.3
Q ss_pred CCcHHHHhhHHHhhccCC-cEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 790 TPTKIQSMVMPSALLARK-DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~-dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
++++-|..++..++..+. -++++|+.|+|||.+ +..+...+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~----------------------------------- 44 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA----------------------------------- 44 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH-----------------------------------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh-----------------------------------
Confidence 368899999987665553 467789999999975 3334433311
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHH
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNH 895 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~ 895 (1493)
.+.++++++||...+....+.
T Consensus 45 ------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 45 ------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp ------TT--EEEEESSHHHHHHHHHH
T ss_pred ------CCCeEEEECCcHHHHHHHHHh
Confidence 235799999999988876554
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0027 Score=75.99 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=59.6
Q ss_pred cEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHH
Q psy16310 808 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 887 (1493)
Q Consensus 808 dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTre 887 (1493)
-++|.|..|||||++++-.+. .+. ....+..++++++...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~-~l~---------------------------------------~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAK-ELQ---------------------------------------NSEEGKKVLYLCGNHP 42 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHH-Hhh---------------------------------------ccccCCceEEEEecch
Confidence 478999999999988543332 220 1134456899999999
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhcc
Q psy16310 888 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE 967 (1493)
Q Consensus 888 La~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~ 967 (1493)
|...+...+.... .. ......+..|..+...+. .........++||+||||+|..
T Consensus 43 l~~~l~~~l~~~~----------~~------------~~~~~~~~~~~~~i~~~~---~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 43 LRNKLREQLAKKY----------NP------------KLKKSDFRKPTSFINNYS---ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred HHHHHHHHHhhhc----------cc------------chhhhhhhhhHHHHhhcc---cccccCCcCCEEEEehhHhhhh
Confidence 9998888776532 00 001223344444433332 0112244679999999999988
Q ss_pred C
Q psy16310 968 S 968 (1493)
Q Consensus 968 ~ 968 (1493)
.
T Consensus 98 ~ 98 (352)
T PF09848_consen 98 K 98 (352)
T ss_pred c
Confidence 4
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.006 Score=68.50 Aligned_cols=176 Identities=19% Similarity=0.167 Sum_probs=104.7
Q ss_pred cCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhc---------cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcc
Q psy16310 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALL---------ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 842 (1493)
Q Consensus 772 ~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~---------~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~ 842 (1493)
.+.|++.++.. | .++..|.+++-.+.. .+.-.++--.||.||.-...--|++.++.+
T Consensus 25 ~~~lp~~~~~~----g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-------- 90 (303)
T PF13872_consen 25 RLHLPEEVIDS----G--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-------- 90 (303)
T ss_pred ccCCCHHHHhc----c--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC--------
Confidence 44566654432 2 357888888754331 134577788999999866555566665432
Q ss_pred cCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH
Q psy16310 843 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 922 (1493)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~ 922 (1493)
..++|++..+-.|-....+.++.++.. .+.+..+.. ..... .
T Consensus 91 ---------------------------------r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~-~~~~~---~ 132 (303)
T PF13872_consen 91 ---------------------------------RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNK-FKYGD---I 132 (303)
T ss_pred ---------------------------------CCceEEEECChhhhhHHHHHHHHhCCC-cccceechh-hccCc---C
Confidence 236899999999999999999998744 444444332 10000 0
Q ss_pred hcCCCcEEEECcHHHHHHHHhCcCcccccc---------ceeEEEecccchhccCCC--------hhHHHHHHHHhcccC
Q psy16310 923 LNKCPHILVATPGRLWEFIQLGHFHLTELY---------KINYLVIDETDRMIESGH--------FPELKNILDRVTMTE 985 (1493)
Q Consensus 923 l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~---------~l~~lVlDEah~ll~~~~--------~~~l~~il~~l~~~~ 985 (1493)
..-.-.|+++|-..|...-..+......+. .=.+|||||||.+-...- ...+..+...|
T Consensus 133 ~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L---- 208 (303)
T PF13872_consen 133 IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL---- 208 (303)
T ss_pred CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC----
Confidence 111235899998777655432111111111 124899999999855432 12233333444
Q ss_pred CCCCceEEEEecccccchHh
Q psy16310 986 TSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 986 ~~~~~q~ll~SATl~~~~~~ 1005 (1493)
++.+++.+|||-..+..+
T Consensus 209 --P~ARvvY~SATgasep~N 226 (303)
T PF13872_consen 209 --PNARVVYASATGASEPRN 226 (303)
T ss_pred --CCCcEEEecccccCCCce
Confidence 456799999999765543
|
|
| >KOG0388|consensus | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0029 Score=75.89 Aligned_cols=123 Identities=16% Similarity=0.194 Sum_probs=103.8
Q ss_pred cCchhhHHHHHH---hhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCe-EEEEechh
Q psy16310 529 HDEKDSYLYYFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS-ILLATDVA 604 (1493)
Q Consensus 529 ~~~k~~~l~~~l---~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~-VLVaTdv~ 604 (1493)
.+.|+..|-.+| ...++++|+|+.-.+....+..+|...++....+.|.....+|..+++.|....+- .|++|-..
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 455555555544 44578999999999999999999999999999999999999999999999886654 57899999
Q ss_pred hccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCC--eEEEEecCC
Q psy16310 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG--LTVVLIESD 651 (1493)
Q Consensus 605 ~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G--~~i~l~~~~ 651 (1493)
+-||++...+.||.||..+++..-.|...||-|-|..- .+|.|++..
T Consensus 1106 GLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred cccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 99999999999999999999999999999999988653 344455443
|
|
| >KOG1803|consensus | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0041 Score=74.57 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=49.6
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.+.+-|.+|+..++....=.++.||+|+|||..-...|.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk------------------------------------- 227 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK------------------------------------- 227 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH-------------------------------------
Confidence 4677899999866644445689999999999987665555442
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHH
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHI 279 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~ 279 (1493)
.+.++|+.+||.+-+.-+.+.+
T Consensus 228 -----~~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 228 -----QKKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred -----cCCeEEEEcCchHHHHHHHHHh
Confidence 3357999999999998887754
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0046 Score=67.11 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=42.9
Q ss_pred CChHHHHhhhhhhhccCC-cEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchh
Q psy16310 173 TPTKIQSMVMPSALLARK-DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 251 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~-dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1493)
++++-|.+++..++.++. -++++++.|+|||.+. -.+...+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~----------------------------------- 44 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA----------------------------------- 44 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH-----------------------------------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh-----------------------------------
Confidence 368899999986655543 4677899999999863 223333321
Q ss_pred hhhcccCceEEEEEcccHHHHHHHHHH
Q psy16310 252 FVKKTRNKLYALILAPTRELAIQVQNH 278 (1493)
Q Consensus 252 ~~~~~~~~~~aLiL~PTreLa~Qi~~~ 278 (1493)
.+.++++++||...+....+.
T Consensus 45 ------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 45 ------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp ------TT--EEEEESSHHHHHHHHHH
T ss_pred ------CCCeEEEECCcHHHHHHHHHh
Confidence 236799999999998876555
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0037 Score=55.92 Aligned_cols=61 Identities=25% Similarity=0.304 Sum_probs=39.8
Q ss_pred hHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCe
Q psy16310 798 VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL 877 (1493)
Q Consensus 798 ~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (1493)
+|..++.++.-+++.||.|||||...+-.+...+... ... +.
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~-------------------------------------~~~-~~ 43 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAAR-------------------------------------ADP-GK 43 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHh-------------------------------------cCC-CC
Confidence 3433454233455699999999976544443333110 112 55
Q ss_pred EEEEEcccHHHHHHHHHHH
Q psy16310 878 YALILAPTRELAIQVQNHI 896 (1493)
Q Consensus 878 ~~lil~PTreLa~Q~~~~~ 896 (1493)
+++|++||+..+..+.+.+
T Consensus 44 ~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 44 RVLVLAPTRAAADELRERL 62 (76)
T ss_pred eEEEECCCHHHHHHHHHHH
Confidence 7999999999999988877
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0076 Score=77.14 Aligned_cols=68 Identities=18% Similarity=0.125 Sum_probs=50.9
Q ss_pred CCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchh
Q psy16310 172 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 251 (1493)
Q Consensus 172 ~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1493)
..+++.|..++..++.....+++.||+|+|||...+-.+.+.+ .
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~-~----------------------------------- 199 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV-K----------------------------------- 199 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH-H-----------------------------------
Confidence 3579999999987775556889999999999986443333322 1
Q ss_pred hhhcccCceEEEEEcccHHHHHHHHHHHHH
Q psy16310 252 FVKKTRNKLYALILAPTRELAIQVQNHILD 281 (1493)
Q Consensus 252 ~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~ 281 (1493)
.+.++|+++||..-|.++.+.+..
T Consensus 200 ------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 200 ------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred ------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 234699999999998888887765
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >KOG1803|consensus | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0058 Score=73.32 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=49.0
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.+.+-|..|+..++....=.+++||+|+|||..-...|.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk------------------------------------- 227 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK------------------------------------- 227 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH-------------------------------------
Confidence 4577899999755544445688999999999886655555442
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHH
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHI 896 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~ 896 (1493)
.+.++||.+||.+-+.-+.+.+
T Consensus 228 -----~~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 228 -----QKKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred -----cCCeEEEEcCchHHHHHHHHHh
Confidence 2357999999999988888854
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0032 Score=75.37 Aligned_cols=96 Identities=16% Similarity=0.131 Sum_probs=59.9
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHH
Q psy16310 191 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 270 (1493)
Q Consensus 191 dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTre 270 (1493)
-++|.|..|||||++++-- +..+. ....+..++++++...
T Consensus 3 v~~I~G~aGTGKTvla~~l-~~~l~---------------------------------------~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNL-AKELQ---------------------------------------NSEEGKKVLYLCGNHP 42 (352)
T ss_pred EEEEEecCCcCHHHHHHHH-HHHhh---------------------------------------ccccCCceEEEEecch
Confidence 4789999999999985433 22220 0123456999999999
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhh
Q psy16310 271 LAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE 350 (1493)
Q Consensus 271 La~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~ 350 (1493)
|+..+...+..... .......+..|..+.+.+. ........+++|||||||+|..
T Consensus 43 l~~~l~~~l~~~~~----------------------~~~~~~~~~~~~~~i~~~~---~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 43 LRNKLREQLAKKYN----------------------PKLKKSDFRKPTSFINNYS---ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred HHHHHHHHHhhhcc----------------------cchhhhhhhhhHHHHhhcc---cccccCCcCCEEEEehhHhhhh
Confidence 99988877755320 0001334445555544332 0111233689999999999987
Q ss_pred c
Q psy16310 351 S 351 (1493)
Q Consensus 351 ~ 351 (1493)
.
T Consensus 98 ~ 98 (352)
T PF09848_consen 98 K 98 (352)
T ss_pred c
Confidence 3
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0047 Score=55.23 Aligned_cols=61 Identities=25% Similarity=0.304 Sum_probs=39.4
Q ss_pred hhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCce
Q psy16310 181 VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL 260 (1493)
Q Consensus 181 ~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (1493)
++..++.++.-+++.||.|||||...+--+...+... ... +.
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~-------------------------------------~~~-~~ 43 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAAR-------------------------------------ADP-GK 43 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHh-------------------------------------cCC-CC
Confidence 3433554333455699999999976444333332110 011 45
Q ss_pred EEEEEcccHHHHHHHHHHH
Q psy16310 261 YALILAPTRELAIQVQNHI 279 (1493)
Q Consensus 261 ~aLiL~PTreLa~Qi~~~~ 279 (1493)
++++++||+..+..+.+.+
T Consensus 44 ~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 44 RVLVLAPTRAAADELRERL 62 (76)
T ss_pred eEEEECCCHHHHHHHHHHH
Confidence 7999999999999988877
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.017 Score=62.65 Aligned_cols=128 Identities=16% Similarity=0.236 Sum_probs=81.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhc--cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALL--ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 769 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~--~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
.|....-|.+|+=.+. .++ -.+|.|.+.....+. .|.|.+.+.-+|.|||.+ ++|++..++..
T Consensus 4 ~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd------------ 68 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD------------ 68 (229)
T ss_pred CCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC------------
Confidence 3555556666665554 232 468999999876554 367999999999999988 78988877642
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCC-CCcEEEEE--EcCCCHHH----H
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY-TPVKVACV--VGGMSTEK----Q 919 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~-~~~~v~~~--~gg~~~~~----~ 919 (1493)
....+.+++|. +|..|..+.+...... .+-++..+ ........ .
T Consensus 69 ----------------------------g~~LvrviVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~ 119 (229)
T PF12340_consen 69 ----------------------------GSRLVRVIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEK 119 (229)
T ss_pred ----------------------------CCcEEEEEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHH
Confidence 12346666664 6999999998774433 34333333 33332111 1
Q ss_pred HH----HhcCCCcEEEECcHHHHHH
Q psy16310 920 LR----ILNKCPHILVATPGRLWEF 940 (1493)
Q Consensus 920 ~~----~l~~~~~IlV~TP~rl~~~ 940 (1493)
.. .....-.|+++||+.+..+
T Consensus 120 ~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 120 IRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred HHHHHHHHHHcCCEEEeChHHHHHH
Confidence 11 1122336999999998764
|
There are two conserved sequence motifs: LLE and NMG. |
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.009 Score=76.50 Aligned_cols=68 Identities=18% Similarity=0.125 Sum_probs=50.7
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..+++.|..|+..++.....+++.||+|||||.+..-.+.+.+ .
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~-~----------------------------------- 199 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV-K----------------------------------- 199 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH-H-----------------------------------
Confidence 3568999999987775556889999999999976443333322 1
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHH
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILD 898 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~ 898 (1493)
.+.++|+++||..-+.++.+.+..
T Consensus 200 ------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 200 ------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred ------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 223699999999988888888765
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0089 Score=67.13 Aligned_cols=145 Identities=19% Similarity=0.183 Sum_probs=88.2
Q ss_pred ccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhc---------cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCcc
Q psy16310 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALL---------ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 225 (1493)
Q Consensus 155 ~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~---------~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~ 225 (1493)
.+.|++.+.. .|. ++..|.+++--+.. .+.-.++--.||.||.-...-.|++..++
T Consensus 25 ~~~lp~~~~~----~g~--LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~--------- 89 (303)
T PF13872_consen 25 RLHLPEEVID----SGL--LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR--------- 89 (303)
T ss_pred ccCCCHHHHh----ccc--ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc---------
Confidence 3456665443 233 78888888743431 13457788899999998755556655542
Q ss_pred CCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH
Q psy16310 226 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 305 (1493)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~ 305 (1493)
.+.++|+++.+-.|-....+.++.++.. .+.+..+..- .... ...
T Consensus 90 --------------------------------Gr~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~-~~~~-~~~ 134 (303)
T PF13872_consen 90 --------------------------------GRKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKF-KYGD-IIR 134 (303)
T ss_pred --------------------------------CCCceEEEECChhhhhHHHHHHHHhCCC-cccceechhh-ccCc-CCC
Confidence 2346999999999999999999988754 4444333321 0000 011
Q ss_pred hcCCCCEEEeCcHHHHHHHHcCCcccccccc---------ccEEEEecCchhhhc
Q psy16310 306 LNKCPHILVATPGRLWEFIQLGHFHLTELYK---------INYLVIDETDRMIES 351 (1493)
Q Consensus 306 l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~---------i~~lViDEAh~ll~~ 351 (1493)
+ .-.||++|...|...-..+......|.+ =.+|||||||++-..
T Consensus 135 ~--~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 135 L--KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred C--CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCC
Confidence 1 2369999998887664321111111111 147999999998543
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.022 Score=63.06 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=35.7
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHH
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l 831 (1493)
.++.--+..|...+. ++.....+++.||+|||||+.+....++.+
T Consensus 55 ~~i~p~n~~Q~~~l~-al~~~~lV~i~G~aGTGKT~La~a~a~~~l 99 (262)
T PRK10536 55 SPILARNEAQAHYLK-AIESKQLIFATGEAGCGKTWISAAKAAEAL 99 (262)
T ss_pred ccccCCCHHHHHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 455566888999986 666677889999999999998877776655
|
|
| >KOG1132|consensus | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.005 Score=76.69 Aligned_cols=39 Identities=23% Similarity=0.242 Sum_probs=29.6
Q ss_pred CCCcHHHHhhHHHhh---ccCCcEEEEccCCCcchhHhhHHH
Q psy16310 789 KTPTKIQSMVMPSAL---LARKDIVGAAETGSGKTLAFGIPI 827 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l---~~~~dvlv~apTGsGKTla~~lpi 827 (1493)
..|+|.|...+..+| ....+.++-.|||+|||++-+-..
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~ 61 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCST 61 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHH
Confidence 468899988876554 445789999999999998754333
|
|
| >KOG1132|consensus | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.012 Score=73.49 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=30.1
Q ss_pred CChHHHHhhhhhhh---ccCCcEEEEccCCCchhHHHHHHHHHH
Q psy16310 173 TPTKIQSMVMPSAL---LARKDIVGAAETGSGKTLAFGIPILTG 213 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l---~~~~dviv~apTGSGKTl~~~lpil~~ 213 (1493)
.|++.|...+...| ....+.++-.|||+|||++-+-..|..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW 64 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAW 64 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHH
Confidence 58899987655433 456789999999999999765554433
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.022 Score=63.05 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=36.6
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHH
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l 214 (1493)
.++...+..|...+. ++..+..+++.||+|||||+.++..+++.+
T Consensus 55 ~~i~p~n~~Q~~~l~-al~~~~lV~i~G~aGTGKT~La~a~a~~~l 99 (262)
T PRK10536 55 SPILARNEAQAHYLK-AIESKQLIFATGEAGCGKTWISAAKAAEAL 99 (262)
T ss_pred ccccCCCHHHHHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 466667888988886 677777889999999999998877776655
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.029 Score=60.85 Aligned_cols=156 Identities=17% Similarity=0.240 Sum_probs=91.5
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhc--cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALL--ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~--~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
+|....-|.+++=-+. .++ -.++.|.+.....+. .|.|.+.++-+|.|||.+ ++|++..++..
T Consensus 4 ~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd------------ 68 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD------------ 68 (229)
T ss_pred CCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC------------
Confidence 3555555666654433 344 489999998875553 367999999999999998 67887666531
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcC-CCCeEEEEEE--cCCCHH-H---H
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK-YTPVKVACVV--GGMSTE-K---Q 302 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~-~~~i~v~~~~--G~~~~~-~---~ 302 (1493)
....+.+++| ++|..|..+.+..... -.+-.+..+- -..... . .
T Consensus 69 ----------------------------g~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~ 119 (229)
T PF12340_consen 69 ----------------------------GSRLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEK 119 (229)
T ss_pred ----------------------------CCcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHH
Confidence 1123556665 5799999888865432 2232332221 122111 1 1
Q ss_pred H----HHhcCCCCEEEeCcHHHHHHHHc-------CCcc----c----cccccccEEEEecCchhhhc
Q psy16310 303 L----RILNKCPHILVATPGRLWEFIQL-------GHFH----L----TELYKINYLVIDETDRMIES 351 (1493)
Q Consensus 303 ~----~~l~~~~~IiV~TP~~L~~~l~~-------~~~~----~----~~l~~i~~lViDEAh~ll~~ 351 (1493)
. ......-.|+++||+.++.+.-. +... + ..|.....=|+||+|..+..
T Consensus 120 ~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~~ 187 (229)
T PF12340_consen 120 IRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILSV 187 (229)
T ss_pred HHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccCc
Confidence 1 11122336999999987654321 1110 0 11223455799999998753
|
There are two conserved sequence motifs: LLE and NMG. |
| >KOG1802|consensus | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.014 Score=70.11 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=61.2
Q ss_pred HHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHH
Q psy16310 165 ALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 244 (1493)
Q Consensus 165 ~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1493)
.+...|+.++..-|..|+...| ++.=.|+++|.|+|||.+-.- |+.|+.+.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL-~rplsLIQGPPGTGKTvtsa~-IVyhl~~~--------------------------- 452 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVL-QRPLSLIQGPPGTGKTVTSAT-IVYHLARQ--------------------------- 452 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHH-cCCceeeecCCCCCceehhHH-HHHHHHHh---------------------------
Confidence 4445578889999999998544 666788999999999997544 34444331
Q ss_pred hhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEE
Q psy16310 245 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVV 294 (1493)
Q Consensus 245 ~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~ 294 (1493)
....+|+.+|+.--+.|+...+.+. +++|.-++
T Consensus 453 -------------~~~~VLvcApSNiAVDqLaeKIh~t----gLKVvRl~ 485 (935)
T KOG1802|consen 453 -------------HAGPVLVCAPSNIAVDQLAEKIHKT----GLKVVRLC 485 (935)
T ss_pred -------------cCCceEEEcccchhHHHHHHHHHhc----CceEeeee
Confidence 2245999999999999998888664 45554443
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.036 Score=56.28 Aligned_cols=51 Identities=33% Similarity=0.498 Sum_probs=40.0
Q ss_pred cccccCCCHHHHHHHHHHHhcCC-CeEEEEechhhccCCCCC--CcEEEEecCC
Q psy16310 572 LPLHASMNQRQRLKNLDRFRDQN-NSILLATDVAARGLDIPG--IEHVIHYHVP 622 (1493)
Q Consensus 572 ~~lhg~~~~~~R~~vl~~Fr~g~-~~VLVaTdv~~rGlDip~--v~~VI~yd~P 622 (1493)
..+..+....+...+++.|+... ..||++|..+.+|+|+|+ ++.||...+|
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 33444555656788999998765 389999988999999997 5789888877
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.074 Score=67.43 Aligned_cols=143 Identities=20% Similarity=0.282 Sum_probs=78.0
Q ss_pred cHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhh
Q psy16310 792 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 871 (1493)
Q Consensus 792 t~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (1493)
.++|..|+-.++ ..+-+++.|++|+|||.+.. -++..+...
T Consensus 154 ~d~Qk~Av~~a~-~~~~~vItGgpGTGKTt~v~-~ll~~l~~~------------------------------------- 194 (615)
T PRK10875 154 VDWQKVAAAVAL-TRRISVISGGPGTGKTTTVA-KLLAALIQL------------------------------------- 194 (615)
T ss_pred CHHHHHHHHHHh-cCCeEEEEeCCCCCHHHHHH-HHHHHHHHh-------------------------------------
Confidence 589999997555 55688999999999997632 233323211
Q ss_pred ccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCc---Ccc
Q psy16310 872 KTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH---FHL 948 (1493)
Q Consensus 872 ~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~---~~~ 948 (1493)
......++++.+||..=|..+.+.+.......++. .. .. .....-..|-.+|+.....+. ...
T Consensus 195 ~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~---------~~-~~----~~~~~~a~TiHrlLg~~~~~~~~~~~~ 260 (615)
T PRK10875 195 ADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT---------DE-QK----KRIPEEASTLHRLLGAQPGSQRLRYHA 260 (615)
T ss_pred cCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc---------hh-hh----hcCCCchHHHHHHhCcCCCccchhhcc
Confidence 01123468899999998888877765543222210 00 00 000111233333322211000 000
Q ss_pred ccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEe
Q psy16310 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996 (1493)
Q Consensus 949 ~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~S 996 (1493)
.....+++||+|||-. ++ ...+..++..+ ++..+++++.
T Consensus 261 ~~~l~~dvlIvDEaSM-vd---~~lm~~ll~al-----~~~~rlIlvG 299 (615)
T PRK10875 261 GNPLHLDVLVVDEASM-VD---LPMMARLIDAL-----PPHARVIFLG 299 (615)
T ss_pred ccCCCCCeEEEChHhc-cc---HHHHHHHHHhc-----ccCCEEEEec
Confidence 1122468999999984 44 34566666665 3556677664
|
|
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.021 Score=63.34 Aligned_cols=88 Identities=24% Similarity=0.325 Sum_probs=66.9
Q ss_pred cCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcC-CCHHHHHHHhcC-CCcEEEECcHHHHHHHHhCcCcccc
Q psy16310 873 TRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGG-MSTEKQLRILNK-CPHILVATPGRLWEFIQLGHFHLTE 950 (1493)
Q Consensus 873 ~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg-~~~~~~~~~l~~-~~~IlV~TP~rl~~~l~~~~~~~~~ 950 (1493)
....|.+|||+..---|..+.+.++.+. .-+..|+-+++- +..++|...+.. ..+|.||||+||..++..+.+.
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~-~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~--- 198 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFK-GKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALS--- 198 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhc-cCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCC---
Confidence 4556889999999999999999888863 112344444443 367788888874 6799999999999999877653
Q ss_pred ccceeEEEecccch
Q psy16310 951 LYKINYLVIDETDR 964 (1493)
Q Consensus 951 l~~l~~lVlDEah~ 964 (1493)
+.++.+||||=-|.
T Consensus 199 l~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 199 LSNLKRIVLDWSYL 212 (252)
T ss_pred cccCeEEEEcCCcc
Confidence 56889999997663
|
|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.042 Score=55.99 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCCC---eEEEEech--hhccCCCCC--CcEEEEecCC
Q psy16310 580 QRQRLKNLDRFRDQNN---SILLATDV--AARGLDIPG--IEHVIHYHVP 622 (1493)
Q Consensus 580 ~~~R~~vl~~Fr~g~~---~VLVaTdv--~~rGlDip~--v~~VI~yd~P 622 (1493)
..+...+++.|++... .||+|+.- +.+|||+|+ ++.||..++|
T Consensus 30 ~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 30 SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 3344688889987544 79999987 999999998 6889988877
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.08 Score=69.04 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=28.8
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhH
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla 822 (1493)
.+ ..+++-|.+|+..+. .++-+++.|+.|||||.+
T Consensus 320 ~~-~~l~~~Q~~Ai~~~~-~~~~~iitGgpGTGKTt~ 354 (720)
T TIGR01448 320 LR-KGLSEEQKQALDTAI-QHKVVILTGGPGTGKTTI 354 (720)
T ss_pred cC-CCCCHHHHHHHHHHH-hCCeEEEECCCCCCHHHH
Confidence 44 468999999998554 556899999999999975
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.087 Score=66.69 Aligned_cols=143 Identities=19% Similarity=0.239 Sum_probs=77.1
Q ss_pred HHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhc
Q psy16310 793 KIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 872 (1493)
Q Consensus 793 ~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (1493)
+.|..|+..++ .++-+++.|+.|||||.+.. .++..+.... .
T Consensus 148 ~~Qk~A~~~al-~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~------------------------------------~ 189 (586)
T TIGR01447 148 NWQKVAVALAL-KSNFSLITGGPGTGKTTTVA-RLLLALVKQS------------------------------------P 189 (586)
T ss_pred HHHHHHHHHHh-hCCeEEEEcCCCCCHHHHHH-HHHHHHHHhc------------------------------------c
Confidence 78999997555 45788999999999997632 2333332110 0
Q ss_pred cCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhC---cCccc
Q psy16310 873 TRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG---HFHLT 949 (1493)
Q Consensus 873 ~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~---~~~~~ 949 (1493)
...+.++++.+||--=|..+.+.+......++.. . ... ....+-..|-.+|+...... .....
T Consensus 190 ~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~---------~-~~~----~~~~~~a~TiHrlLg~~~~~~~~~~~~~ 255 (586)
T TIGR01447 190 KQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA---------E-ALI----AALPSEAVTIHRLLGIKPDTKRFRHHER 255 (586)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc---------h-hhh----hccccccchhhhhhcccCCcchhhhccc
Confidence 0112469999999988887777665433222110 0 000 00112233433433221100 00001
Q ss_pred cccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEe
Q psy16310 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFS 996 (1493)
Q Consensus 950 ~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~S 996 (1493)
....+++||||||=. ++ ...+..++..+ +...+++++.
T Consensus 256 ~~l~~dvlIiDEaSM-vd---~~l~~~ll~al-----~~~~rlIlvG 293 (586)
T TIGR01447 256 NPLPLDVLVVDEASM-VD---LPLMAKLLKAL-----PPNTKLILLG 293 (586)
T ss_pred CCCcccEEEEccccc-CC---HHHHHHHHHhc-----CCCCEEEEEC
Confidence 122578999999984 44 24566666665 3556676664
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >KOG1015|consensus | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.03 Score=69.76 Aligned_cols=117 Identities=18% Similarity=0.226 Sum_probs=94.9
Q ss_pred chhhHHHHHHHh---CCCcEEEEecchhhHHHHHHHHHhc----------------------CCCccccccCCCHHHHHH
Q psy16310 1064 EKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTML----------------------KCSPLPLHASMNQRQRLK 1118 (1493)
Q Consensus 1064 ~k~~~l~~~l~~---~~~~~IVF~~s~~~~~~l~~~L~~~----------------------~~~~~~lhg~m~~~~R~~ 1118 (1493)
.|...|+.+|.. -+.+.|||..+..+.+.+-.+|... |..-+.+.|..+..+|..
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 444455555543 3789999999999999998888643 334556788999999999
Q ss_pred HHHHHhcCC----CCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEE
Q psy16310 1119 NLDRFRDQN----NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVL 1180 (1493)
Q Consensus 1119 ~~~~F~~g~----~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l 1180 (1493)
...+|..-. .-.||+|-+.+-|||+-..+.||.||..+++.--+|-|=|+=|.|+..-+|++
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 999998632 23699999999999999999999999999999889999999999986655553
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.057 Score=54.87 Aligned_cols=50 Identities=32% Similarity=0.482 Sum_probs=38.9
Q ss_pred ccccCCCHHHHHHHHHHHhcCC-CCeEEeehhhhccccCCC--ccEEEEecCC
Q psy16310 1106 PLHASMNQRQRLKNLDRFRDQN-NSILLATDVAARGLDIPG--IEHVIHYHVP 1155 (1493)
Q Consensus 1106 ~lhg~m~~~~R~~~~~~F~~g~-~~VLVaTdv~~~GiDip~--v~~VI~~d~p 1155 (1493)
.+.-+....+...+++.|+... ..||++|.-+++|+|+|+ ++.||...+|
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 3444455556788999998754 379999988999999997 4678887776
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.12 Score=67.48 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=29.5
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHH
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~ 206 (1493)
.++ .+++-|.+++..+ ..++-+++.++.|+|||.+.
T Consensus 320 ~~~-~l~~~Q~~Ai~~~-~~~~~~iitGgpGTGKTt~l 355 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTA-IQHKVVILTGGPGTGKTTIT 355 (720)
T ss_pred cCC-CCCHHHHHHHHHH-HhCCeEEEECCCCCCHHHHH
Confidence 454 6899999999855 45678999999999999863
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.038 Score=55.59 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=13.0
Q ss_pred cCCcEEEEccCCCcchhHhh
Q psy16310 805 ARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~ 824 (1493)
+++-+++.||+|+|||.+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ----EEEEE-TTSSHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHH
Confidence 34678999999999997643
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.068 Score=53.78 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=12.8
Q ss_pred cCCcEEEEccCCCchhHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~ 206 (1493)
+++.+++.|++|+|||.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ----EEEEE-TTSSHHHHH
T ss_pred CCcccEEEcCCCCCHHHHH
Confidence 4567899999999999974
|
|
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.034 Score=61.64 Aligned_cols=87 Identities=24% Similarity=0.325 Sum_probs=66.4
Q ss_pred cCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCC-CHHHHHHHhcC-CCCEEEeCcHHHHHHHHcCCcccccc
Q psy16310 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGM-STEKQLRILNK-CPHILVATPGRLWEFIQLGHFHLTEL 334 (1493)
Q Consensus 257 ~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~-~~~~~~~~l~~-~~~IiV~TP~~L~~~l~~~~~~~~~l 334 (1493)
...|.+|||+..---|..+.+.++.+.. -+..|+-++.-. ...++...+.. ..+|.||||+||..++..+.+.+
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l--- 199 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSL--- 199 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCc---
Confidence 3457899999988888888888877631 135555666554 67777777764 67999999999999998877654
Q ss_pred ccccEEEEecCch
Q psy16310 335 YKINYLVIDETDR 347 (1493)
Q Consensus 335 ~~i~~lViDEAh~ 347 (1493)
.++.+||||=-|.
T Consensus 200 ~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 200 SNLKRIVLDWSYL 212 (252)
T ss_pred ccCeEEEEcCCcc
Confidence 5889999997663
|
|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.079 Score=53.98 Aligned_cols=65 Identities=15% Similarity=0.256 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCC---CccccccCCCHHHHHHHHHHHhcCCC---CeEEeehh--hhccccCCC--ccEEEEecCC
Q psy16310 1091 KRLTQLLTMLKC---SPLPLHASMNQRQRLKNLDRFRDQNN---SILLATDV--AARGLDIPG--IEHVIHYHVP 1155 (1493)
Q Consensus 1091 ~~l~~~L~~~~~---~~~~lhg~m~~~~R~~~~~~F~~g~~---~VLVaTdv--~~~GiDip~--v~~VI~~d~p 1155 (1493)
+.++..+...+. ....+.-+....+...+++.|+.... .||+|+.- +++|||+|+ +++||...+|
T Consensus 5 ~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 5 EQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred HHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 445555554432 12223322333355788999987544 69999887 999999998 5788888877
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.2 Score=65.64 Aligned_cols=33 Identities=15% Similarity=0.067 Sum_probs=27.5
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhH
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla 822 (1493)
.+++-|..|+..++..++-+++.|+.|+|||.+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl 384 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM 384 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH
Confidence 579999999986665456779999999999965
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.021 Score=68.17 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=29.5
Q ss_pred cCCCCEEEeCcHHHHHHHHcC---CccccccccccE-EEEecCchhh
Q psy16310 307 NKCPHILVATPGRLWEFIQLG---HFHLTELYKINY-LVIDETDRMI 349 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~~~l~~~---~~~~~~l~~i~~-lViDEAh~ll 349 (1493)
..+..|+++|-+.|...+.+. .+.+..|.+..+ .+-|||||+-
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 445679999999998777543 333444555555 4669999984
|
|
| >KOG0701|consensus | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.016 Score=78.26 Aligned_cols=93 Identities=24% Similarity=0.416 Sum_probs=76.9
Q ss_pred cEEEEecchhhHHHHHHHHHhcC-CCccccccCCC-----------HHHHHHHHHHHhcCCCeEEEEechhhccCCCCCC
Q psy16310 546 RTLVFCNSISSVKRLTQLLTMLK-CSPLPLHASMN-----------QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 613 (1493)
Q Consensus 546 ~~IIF~~s~~~a~~L~~~L~~~~-~~~~~lhg~~~-----------~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v 613 (1493)
..|+||+.+..+..+.+++.... ..+..+.|.+. ...+..++..|+...+++|++|.++.+|+|+|.|
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 46999999999999998887652 22333444321 2346889999999999999999999999999999
Q ss_pred cEEEEecCCCChHHHHHHHhccccC
Q psy16310 614 EHVIHYHVPRTSEIYIHRSGRTARA 638 (1493)
Q Consensus 614 ~~VI~yd~P~s~~~yiQR~GRagR~ 638 (1493)
+.|+.++.|.....|+|+.||+-+.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999995444
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.28 Score=64.33 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHH
Q psy16310 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 205 (1493)
Q Consensus 158 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~ 205 (1493)
+++..+......++ .+++-|.+++..++.+++-+++.++.|+|||.+
T Consensus 338 ~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl 384 (744)
T TIGR02768 338 VSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM 384 (744)
T ss_pred CCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH
Confidence 44444443333444 589999999986554456788999999999976
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.2 Score=63.50 Aligned_cols=70 Identities=23% Similarity=0.280 Sum_probs=46.5
Q ss_pred hHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhh
Q psy16310 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 254 (1493)
Q Consensus 175 t~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1493)
.++|+.++..++ .++-+++.|+.|+|||.+..- ++..+....
T Consensus 147 ~~~Qk~A~~~al-~~~~~vitGgpGTGKTt~v~~-ll~~l~~~~------------------------------------ 188 (586)
T TIGR01447 147 QNWQKVAVALAL-KSNFSLITGGPGTGKTTTVAR-LLLALVKQS------------------------------------ 188 (586)
T ss_pred cHHHHHHHHHHh-hCCeEEEEcCCCCCHHHHHHH-HHHHHHHhc------------------------------------
Confidence 378999997555 567899999999999986322 222222100
Q ss_pred cccCceEEEEEcccHHHHHHHHHHHHHh
Q psy16310 255 KTRNKLYALILAPTRELAIQVQNHILDA 282 (1493)
Q Consensus 255 ~~~~~~~aLiL~PTreLa~Qi~~~~~~l 282 (1493)
....+.++++.+||---|..+.+.+...
T Consensus 189 ~~~~~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 189 PKQGKLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHhh
Confidence 0001246999999998888877766543
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.057 Score=63.70 Aligned_cols=69 Identities=22% Similarity=0.110 Sum_probs=50.4
Q ss_pred CcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhh
Q psy16310 791 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 870 (1493)
Q Consensus 791 pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (1493)
+|+-|.++|.. ....++|.|..|||||.+.+.-++..+....
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----------------------------------- 42 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----------------------------------- 42 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----------------------------------
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----------------------------------
Confidence 47889999963 4569999999999999986655554443221
Q ss_pred hccCCCeEEEEEcccHHHHHHHHHHHHHhh
Q psy16310 871 KKTRNKLYALILAPTRELAIQVQNHILDAG 900 (1493)
Q Consensus 871 ~~~~~~~~~lil~PTreLa~Q~~~~~~~~~ 900 (1493)
..+.++|+|++|+..|..+...+...+
T Consensus 43 ---~~~~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 43 ---VPPERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp ---STGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred ---CChHHheecccCHHHHHHHHHHHHHhc
Confidence 233459999999999999999888854
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.19 Score=57.15 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=18.1
Q ss_pred hccCCcEEEEccCCCcchhHhh
Q psy16310 803 LLARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 803 l~~~~dvlv~apTGsGKTla~~ 824 (1493)
+..+++++++||+|+|||..+.
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAA 124 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHH
Confidence 3467899999999999996544
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.064 Score=63.27 Aligned_cols=125 Identities=18% Similarity=0.102 Sum_probs=71.9
Q ss_pred ChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhh
Q psy16310 174 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 253 (1493)
Q Consensus 174 pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1493)
+++-|.+++. . ...+++|.|..|||||.+.+--++..+....
T Consensus 1 l~~eQ~~~i~-~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----------------------------------- 42 (315)
T PF00580_consen 1 LTDEQRRIIR-S--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----------------------------------- 42 (315)
T ss_dssp S-HHHHHHHH-S---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----------------------------------
T ss_pred CCHHHHHHHh-C--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----------------------------------
Confidence 4788999996 3 3569999999999999986655555443211
Q ss_pred hcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccc
Q psy16310 254 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 333 (1493)
Q Consensus 254 ~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~ 333 (1493)
....++|+|++|+..|..+...+.......... ................+-|+|-..+..-+-........
T Consensus 43 ---~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~ 113 (315)
T PF00580_consen 43 ---VPPERILVLTFTNAAAQEMRERIRELLEEEQQE------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIG 113 (315)
T ss_dssp ---STGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTT
T ss_pred ---CChHHheecccCHHHHHHHHHHHHHhcCccccc------ccccccccccccccchheeehhhhhhhhhhhhhhhhhh
Confidence 223459999999999999988887753211100 00000111111223468889987776544322211111
Q ss_pred cccccEEEEecCc
Q psy16310 334 LYKINYLVIDETD 346 (1493)
Q Consensus 334 l~~i~~lViDEAh 346 (1493)
+ .-.+-++|+..
T Consensus 114 ~-~~~~~i~~~~~ 125 (315)
T PF00580_consen 114 I-DPNFEILDEEE 125 (315)
T ss_dssp S-HTTTEEECHHH
T ss_pred c-cccceeecchh
Confidence 1 12456777776
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.26 Score=62.62 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=47.3
Q ss_pred hHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhh
Q psy16310 175 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 254 (1493)
Q Consensus 175 t~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1493)
.++|+.|+-.++ .++-+++.|+.|+|||.+..- ++..+...
T Consensus 154 ~d~Qk~Av~~a~-~~~~~vItGgpGTGKTt~v~~-ll~~l~~~------------------------------------- 194 (615)
T PRK10875 154 VDWQKVAAAVAL-TRRISVISGGPGTGKTTTVAK-LLAALIQL------------------------------------- 194 (615)
T ss_pred CHHHHHHHHHHh-cCCeEEEEeCCCCCHHHHHHH-HHHHHHHh-------------------------------------
Confidence 589999997555 557899999999999986322 22222110
Q ss_pred cccCceEEEEEcccHHHHHHHHHHHHHh
Q psy16310 255 KTRNKLYALILAPTRELAIQVQNHILDA 282 (1493)
Q Consensus 255 ~~~~~~~aLiL~PTreLa~Qi~~~~~~l 282 (1493)
......++++++||.--|..+.+.+...
T Consensus 195 ~~~~~~~i~l~APTgkAA~rL~e~~~~~ 222 (615)
T PRK10875 195 ADGERCRIRLAAPTGKAAARLTESLGKA 222 (615)
T ss_pred cCCCCcEEEEECCcHHHHHHHHHHHHhh
Confidence 0012356899999999998887766543
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.21 Score=59.61 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=27.1
Q ss_pred cceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 952 ~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
.+.++|++|++.++... ...+..+...+.... ++.-.++.+|||....
T Consensus 253 ~~~DlVLIDTaGr~~~~--~~~l~el~~~l~~~~-~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKD--FMKLAEMKELLNACG-RDAEFHLAVSSTTKTS 300 (388)
T ss_pred CCCCEEEEcCCCCCccC--HHHHHHHHHHHHhcC-CCCeEEEEEcCCCCHH
Confidence 35689999999986532 112333333332111 1223567899998743
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.032 Score=66.62 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=44.2
Q ss_pred cCCCcEEEECcHHHHHHHHhC---cCccccccceeEE-EecccchhccCCC---------hhHHHHHHHHhcccCCCCCc
Q psy16310 924 NKCPHILVATPGRLWEFIQLG---HFHLTELYKINYL-VIDETDRMIESGH---------FPELKNILDRVTMTETSQPR 990 (1493)
Q Consensus 924 ~~~~~IlV~TP~rl~~~l~~~---~~~~~~l~~l~~l-VlDEah~ll~~~~---------~~~l~~il~~l~~~~~~~~~ 990 (1493)
..+..|.++|.+.|...+.+. ...+.+|.+..+| +-|||||+-...- ...+...+... ....+.-
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la--~~~nkd~ 156 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLA--LEQNKDN 156 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHH--HhcCCCc
Confidence 345689999999988776433 3444556666654 6699999843211 11222222111 1223445
Q ss_pred eEEEEeccccc
Q psy16310 991 QTFVFSATLTH 1001 (1493)
Q Consensus 991 q~ll~SATl~~ 1001 (1493)
-++.||||.|.
T Consensus 157 ~~lef~at~~k 167 (812)
T COG3421 157 LLLEFSATIPK 167 (812)
T ss_pred eeehhhhcCCc
Confidence 56779999983
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.12 Score=58.38 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=18.7
Q ss_pred hccCCcEEEEccCCCcchhHhhH
Q psy16310 803 LLARKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 803 l~~~~dvlv~apTGsGKTla~~l 825 (1493)
+..+.+++++||+|+|||..+..
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHH
Confidence 34678999999999999976543
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.21 Score=57.02 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=34.9
Q ss_pred CCCCCCcHHHHhhHHHhhccCC-cEEEEccCCCcchhHhhHHHHHHHhh
Q psy16310 786 KGFKTPTKIQSMVMPSALLARK-DIVGAAETGSGKTLAFGIPILTGIVN 833 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~-dvlv~apTGsGKTla~~lpil~~l~~ 833 (1493)
.|+.--.-.|.-|+..++...- =|.+.++-|||||+.++.+.+...+.
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e 272 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLE 272 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHH
Confidence 3666667789999974443322 25678999999999988888877754
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.27 Score=55.81 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=18.6
Q ss_pred hccCCcEEEEccCCCchhHHHHH
Q psy16310 186 LLARKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 186 l~~~~dviv~apTGSGKTl~~~l 208 (1493)
+..+++++++||+|+|||..+..
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAA 125 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHH
Confidence 34678999999999999976543
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.44 Score=63.46 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=28.6
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHH
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 205 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~ 205 (1493)
.|+ .+++-|.+++..++.++.-+++.++.|+|||.+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~ 378 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM 378 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH
Confidence 454 699999999985554344578999999999986
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.22 Score=66.22 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=28.5
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhH
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla 822 (1493)
.|+ .+++-|.+++..++....-++++|+.|+|||.+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~ 378 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM 378 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH
Confidence 454 589999999986664444578999999999976
|
|
| >KOG1805|consensus | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.17 Score=64.31 Aligned_cols=138 Identities=15% Similarity=0.098 Sum_probs=85.5
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHH
Q psy16310 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 852 (1493)
Q Consensus 773 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 852 (1493)
..+.|.+.+. -+..+...|++|+-.++....-.++.|=+|||||...... +..++.
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~L-IkiL~~------------------- 711 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLL-IKILVA------------------- 711 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHH-HHHHHH-------------------
Confidence 4566666553 3346688899999988888777899999999999764433 232321
Q ss_pred HHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEc---------------CCCHH
Q psy16310 853 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVG---------------GMSTE 917 (1493)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~g---------------g~~~~ 917 (1493)
.+.++|..+-|..=+.-+.-.++.+. +.+.-+-. +.+..
T Consensus 712 ----------------------~gkkVLLtsyThsAVDNILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~k 765 (1100)
T KOG1805|consen 712 ----------------------LGKKVLLTSYTHSAVDNILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEK 765 (1100)
T ss_pred ----------------------cCCeEEEEehhhHHHHHHHHHHhccC----cceeecCCccccchHHHHHhcccccchh
Confidence 23468888888877776666665543 32222211 11111
Q ss_pred --HHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhcc
Q psy16310 918 --KQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE 967 (1493)
Q Consensus 918 --~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~ 967 (1493)
......-+.+.||.+|---+.+.+. ..+++++.|+|||-.++.
T Consensus 766 s~~~l~~~~~~~~IVa~TClgi~~plf-------~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 766 SYADLKKFLDQTSIVACTCLGINHPLF-------VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred hHHHHHHHhCCCcEEEEEccCCCchhh-------hccccCEEEEcccccccc
Confidence 1122233456788888544444332 233579999999998754
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.15 Score=58.07 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=34.8
Q ss_pred CCCCCChHHHHhhhhhhhccC-C-cEEEEccCCCchhHHHHHHHHHHHHh
Q psy16310 169 KGFKTPTKIQSMVMPSALLAR-K-DIVGAAETGSGKTLAFGIPILTGIVN 216 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~-~-dviv~apTGSGKTl~~~lpil~~l~~ 216 (1493)
.|+..-.-.|.-|+. +|+.. - =|.+.++-|||||+.++...+...+.
T Consensus 224 wGi~prn~eQ~~ALd-lLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e 272 (436)
T COG1875 224 WGIRPRNAEQRVALD-LLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLE 272 (436)
T ss_pred hccCcccHHHHHHHH-HhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHH
Confidence 478777778888887 55442 2 25678999999999988887766653
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.26 Score=50.21 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCcchhH
Q psy16310 806 RKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla 822 (1493)
+..+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999964
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.074 Score=57.46 Aligned_cols=19 Identities=16% Similarity=-0.102 Sum_probs=14.7
Q ss_pred cEEEEccCCCcchhHhhHH
Q psy16310 808 DIVGAAETGSGKTLAFGIP 826 (1493)
Q Consensus 808 dvlv~apTGsGKTla~~lp 826 (1493)
=.++.||+|+|||.+.+--
T Consensus 4 i~litG~~GsGKTT~~l~~ 22 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQR 22 (190)
T ss_pred EEEEECCCCCHHHHHHHHH
Confidence 4688999999999765433
|
|
| >KOG1805|consensus | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.21 Score=63.54 Aligned_cols=137 Identities=16% Similarity=0.119 Sum_probs=85.4
Q ss_pred cCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHH
Q psy16310 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 235 (1493)
Q Consensus 156 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 235 (1493)
..+.|.+.+. -+..+..-|++|+-.++....-.+|.|=+|+|||..-+..+ ..|+
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~-------------------- 710 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILV-------------------- 710 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHH--------------------
Confidence 3455555553 23457888999998888877778899999999998744432 2222
Q ss_pred HHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEE---------------EcCCC--
Q psy16310 236 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACV---------------VGGMS-- 298 (1493)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~---------------~G~~~-- 298 (1493)
..+.++|..+-|..-+.-+.-.+..+. +.+.-+ +.+++
T Consensus 711 ---------------------~~gkkVLLtsyThsAVDNILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~k 765 (1100)
T KOG1805|consen 711 ---------------------ALGKKVLLTSYTHSAVDNILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEK 765 (1100)
T ss_pred ---------------------HcCCeEEEEehhhHHHHHHHHHHhccC----cceeecCCccccchHHHHHhcccccchh
Confidence 245679999988887776655554432 221111 11111
Q ss_pred HHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhh
Q psy16310 299 TEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 349 (1493)
Q Consensus 299 ~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll 349 (1493)
.-.......+.+.|+.||--.+.+.|.. ..++++.|||||-.++
T Consensus 766 s~~~l~~~~~~~~IVa~TClgi~~plf~-------~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 766 SYADLKKFLDQTSIVACTCLGINHPLFV-------NRQFDYCIIDEASQIL 809 (1100)
T ss_pred hHHHHHHHhCCCcEEEEEccCCCchhhh-------ccccCEEEEccccccc
Confidence 1112223345578999987666443322 3367999999999874
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.57 Score=62.80 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhH
Q psy16310 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 774 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla 822 (1493)
++++..+......+ ..+++-|..++..+...++-++++|+-|+|||.+
T Consensus 366 ~v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~ 413 (1102)
T PRK13826 366 GVREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM 413 (1102)
T ss_pred CCCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH
Confidence 45555555544444 3689999999986554556789999999999976
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.21 Score=56.47 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=19.0
Q ss_pred hccCCcEEEEccCCCchhHHHHH
Q psy16310 186 LLARKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 186 l~~~~dviv~apTGSGKTl~~~l 208 (1493)
+..+.+++++||+|+|||..+.-
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHH
Confidence 44678999999999999987544
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.13 Score=61.64 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=25.3
Q ss_pred CcHHHHhhHHHhh-----ccCCcEEEEccCCCcchhH
Q psy16310 791 PTKIQSMVMPSAL-----LARKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 791 pt~iQ~~~i~~~l-----~~~~dvlv~apTGsGKTla 822 (1493)
+++-|..++..++ ..+..+++.|+-|+|||..
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l 38 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL 38 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH
Confidence 5677888876431 5678999999999999965
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.81 Score=61.40 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=36.7
Q ss_pred cCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHH
Q psy16310 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 205 (1493)
Q Consensus 156 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~ 205 (1493)
.++++..+......++ .+++-|.+++..+...++-+++.|+-|+|||.+
T Consensus 365 ~~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~ 413 (1102)
T PRK13826 365 HGVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM 413 (1102)
T ss_pred CCCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH
Confidence 3566666665555554 699999999985444456788999999999986
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.16 Score=59.22 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=34.2
Q ss_pred HHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHH
Q psy16310 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 205 (1493)
Q Consensus 162 l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~ 205 (1493)
.+..|.+.|+ +++.|.+.+..++..+.+++++|+||||||..
T Consensus 123 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl 164 (319)
T PRK13894 123 TLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL 164 (319)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH
Confidence 4555666676 56788888887888899999999999999954
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.8 Score=54.81 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchhHHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~l 208 (1493)
+..+++++|||+|||.+..-
T Consensus 174 ~~vi~lvGptGvGKTTT~aK 193 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAK 193 (388)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45788999999999987543
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.18 Score=58.84 Aligned_cols=48 Identities=27% Similarity=0.326 Sum_probs=35.5
Q ss_pred HHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHH
Q psy16310 780 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTG 830 (1493)
Q Consensus 780 ~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~ 830 (1493)
+..|...|+ +++.|...+..++..+.+++++|+||||||.. +-.++..
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~ 171 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINE 171 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHh
Confidence 445555665 45778888877788889999999999999943 4444443
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.99 Score=50.54 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=15.9
Q ss_pred CcEEEEccCCCchhHHHHH
Q psy16310 190 KDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~l 208 (1493)
..+++++++|+|||..+..
T Consensus 100 ~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4799999999999987543
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.83 Score=53.59 Aligned_cols=47 Identities=26% Similarity=0.287 Sum_probs=30.7
Q ss_pred ceeEEEecccchhc-cCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 953 KINYLVIDETDRMI-ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 953 ~l~~lVlDEah~ll-~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
..++|++|.|.++. +......+..+...+ .+...++.++||...+..
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~-----~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVT-----KPDLVIFVGDALAGNDAV 269 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhh-----CCceEEEeeccccchhHH
Confidence 35789999999875 233455666665544 244567788998765443
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.67 Score=52.02 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
..++++.||+|+|||..+
T Consensus 101 ~~~l~l~G~~GtGKThLa 118 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA 118 (248)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 368999999999999654
|
|
| >KOG0701|consensus | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.06 Score=73.10 Aligned_cols=94 Identities=23% Similarity=0.427 Sum_probs=77.2
Q ss_pred cEEEEecchhhHHHHHHHHHhcCC-CccccccCCC-----------HHHHHHHHHHHhcCCCCeEEeehhhhccccCCCc
Q psy16310 1079 RTLVFCNSISSVKRLTQLLTMLKC-SPLPLHASMN-----------QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI 1146 (1493)
Q Consensus 1079 ~~IVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~m~-----------~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v 1146 (1493)
..|+||+.+..+..+.+.+..... .+..+-|.+. +..+..++..|....+++|++|.++..|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 468999999999999998877632 2222333222 2235789999999999999999999999999999
Q ss_pred cEEEEecCCCChhHHHHHHhccCCCC
Q psy16310 1147 EHVIHYHVPRTSEIYIHRSGRTARAN 1172 (1493)
Q Consensus 1147 ~~VI~~d~p~s~~~yiqr~GR~gR~g 1172 (1493)
+.|+.++.|.....|+|+.||+-+++
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999987753
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.92 Score=50.77 Aligned_cols=48 Identities=27% Similarity=0.306 Sum_probs=27.2
Q ss_pred cceeEEEecccchhccCCChh-HHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 952 YKINYLVIDETDRMIESGHFP-ELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 952 ~~l~~lVlDEah~ll~~~~~~-~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..+++|||||++......+.. .+..|+..-. .....+++.|---+..+
T Consensus 161 ~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 161 SNVDLLVIDEIGVQTESRYEKVIINQIVDRRS----SSKRPTGMLTNSNMEEM 209 (244)
T ss_pred ccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHH----hCCCCEEEeCCCCHHHH
Confidence 357899999999865433322 3444554421 23456777665544443
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.2 Score=60.12 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=25.7
Q ss_pred ChHHHHhhhhhhh-----ccCCcEEEEccCCCchhHHH
Q psy16310 174 PTKIQSMVMPSAL-----LARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 174 pt~iQ~~~i~~~l-----~~~~dviv~apTGSGKTl~~ 206 (1493)
+++-|+.++...+ ..+.++++.|+-|+|||..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH
Confidence 5677888876331 56789999999999999873
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.29 Score=55.12 Aligned_cols=64 Identities=19% Similarity=0.349 Sum_probs=51.8
Q ss_pred HHHHHHhcCCCCeEEeehhhhccccCCC--------ccEEEEecCCCChhHHHHHHhccCCCCCC-CeEEEEe
Q psy16310 1118 KNLDRFRDQNNSILLATDVAARGLDIPG--------IEHVIHYHVPRTSEIYIHRSGRTARANNE-GLTLVLI 1181 (1493)
Q Consensus 1118 ~~~~~F~~g~~~VLVaTdv~~~GiDip~--------v~~VI~~d~p~s~~~yiqr~GR~gR~g~~-G~~i~l~ 1181 (1493)
...+.|.+|+..|+|.|++++.||-+.+ -++-|...+|++....+|..||+-|.|+. +-.|.++
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l 124 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFL 124 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEe
Confidence 4567899999999999999999998753 23456688999999999999999999873 3334444
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.13 Score=55.43 Aligned_cols=19 Identities=21% Similarity=-0.031 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHHHH
Q psy16310 190 KDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~l 208 (1493)
.=.++.+|+|+|||..++-
T Consensus 3 ~i~litG~~GsGKTT~~l~ 21 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQ 21 (190)
T ss_pred EEEEEECCCCCHHHHHHHH
Confidence 3467899999999987443
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.75 Score=53.97 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCcchhHh
Q psy16310 805 ARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~ 823 (1493)
.+.++++.||||+|||..+
T Consensus 182 ~~~~Lll~G~~GtGKThLa 200 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS 200 (329)
T ss_pred cCCcEEEECCCCCcHHHHH
Confidence 3579999999999999754
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.45 Score=48.41 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHH
Q psy16310 189 RKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~ 206 (1493)
+..+++.||+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678999999999999753
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=92.21 E-value=1.1 Score=46.52 Aligned_cols=17 Identities=41% Similarity=0.251 Sum_probs=13.8
Q ss_pred EEEEccCCCcchhHhhH
Q psy16310 809 IVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 809 vlv~apTGsGKTla~~l 825 (1493)
+++.||+|+|||.....
T Consensus 2 ~~i~G~~G~GKT~l~~~ 18 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ 18 (165)
T ss_pred eeEeCCCCCCHHHHHHH
Confidence 57899999999976443
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.71 Score=54.17 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCCchhHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~ 207 (1493)
.+.+++++||||+|||..+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~ 201 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN 201 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH
Confidence 35799999999999998643
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.35 Score=56.33 Aligned_cols=40 Identities=35% Similarity=0.337 Sum_probs=33.1
Q ss_pred HHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHH
Q psy16310 164 RALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 205 (1493)
Q Consensus 164 ~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~ 205 (1493)
..+...|. +++.|...+..++..+.+++++|+||||||..
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl 160 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL 160 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH
Confidence 44556666 66788888888888889999999999999986
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=92.02 E-value=1.1 Score=50.33 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchhHHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~l 208 (1493)
..++++.||+|+|||..+..
T Consensus 101 ~~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46899999999999986443
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.29 Score=58.03 Aligned_cols=23 Identities=22% Similarity=0.049 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCCcchhHhhHHH
Q psy16310 805 ARKDIVGAAETGSGKTLAFGIPI 827 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~lpi 827 (1493)
.+..++++||||+|||......+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA 158 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLA 158 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999998754433
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.56 Score=53.05 Aligned_cols=22 Identities=23% Similarity=0.107 Sum_probs=18.3
Q ss_pred ccCCcEEEEccCCCcchhHhhH
Q psy16310 804 LARKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 804 ~~~~dvlv~apTGsGKTla~~l 825 (1493)
..+.++++.||+|+|||..+..
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHH
Confidence 3678999999999999977543
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.57 Score=52.45 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=14.2
Q ss_pred CcEEEEccCCCcchhHh
Q psy16310 807 KDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~ 823 (1493)
.-+++.||+|+|||...
T Consensus 42 ~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999653
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.46 Score=55.18 Aligned_cols=43 Identities=37% Similarity=0.428 Sum_probs=33.2
Q ss_pred HHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHH
Q psy16310 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 162 l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~ 206 (1493)
-+..|.+.|. +++-|.+.+..++..+.+++++|+||||||...
T Consensus 107 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 107 TLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA 149 (299)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH
Confidence 3455555665 556777777778888889999999999999863
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.4 Score=55.84 Aligned_cols=46 Identities=30% Similarity=0.322 Sum_probs=33.9
Q ss_pred HHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHH
Q psy16310 782 ALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTG 830 (1493)
Q Consensus 782 ~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~ 830 (1493)
.+...|. .++.|...+..++..+.+++++|+||||||.. +-.++..
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~ 167 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAE 167 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHH
Confidence 3445555 46788888887888889999999999999965 3334443
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.73 Score=57.24 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=25.9
Q ss_pred ceeEEEecccchhccCC-ChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 953 KINYLVIDETDRMIESG-HFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 953 ~l~~lVlDEah~ll~~~-~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
.+++|||||+|.+.... ....+..++..+.. ...++++.|...|..
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~----~~~~iiits~~~p~~ 257 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHE----AGKQIVLTSDRPPKE 257 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHH----CCCcEEEECCCCHHH
Confidence 46789999999875432 12345555555432 234555555444433
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=91.69 E-value=1.5 Score=51.54 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHHH
Q psy16310 190 KDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~ 207 (1493)
.-+++++++|+|||....
T Consensus 141 ~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 457889999999998643
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.85 Score=51.06 Aligned_cols=18 Identities=22% Similarity=0.093 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHHH
Q psy16310 190 KDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~ 207 (1493)
..++++||+|+|||....
T Consensus 42 ~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358999999999997543
|
|
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.3 Score=61.10 Aligned_cols=72 Identities=14% Similarity=0.002 Sum_probs=50.5
Q ss_pred HHHHhhHHHhhc----c----CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 793 KIQSMVMPSALL----A----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 793 ~iQ~~~i~~~l~----~----~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
|+|.-.+-.++- . -+.+++.-|=|.|||......++..++-.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~------------------------------ 50 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD------------------------------ 50 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC------------------------------
Confidence 567766654331 1 14688888999999977655444444221
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCC
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY 902 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~ 902 (1493)
...+..+++.+++++-|..+++.+..+...
T Consensus 51 --------g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 51 --------GEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred --------CccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 234567999999999999999999887654
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.55 E-value=1.9 Score=50.99 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=17.2
Q ss_pred CCcEEEEccCCCchhHHHHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFGIPI 210 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~lpi 210 (1493)
.+.+++++|||+|||......+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHH
Confidence 3578899999999998754443
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.6 Score=53.75 Aligned_cols=47 Identities=26% Similarity=0.185 Sum_probs=28.6
Q ss_pred HHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhH
Q psy16310 778 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 778 ~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~l 825 (1493)
++.++|...|..+..|.--..+ --+..|.-+++.|++|+|||....-
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~-gG~~~g~~~~i~g~~G~GKT~l~~~ 49 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLT-KGLRKGELIILTAGTGVGKTTFLRE 49 (271)
T ss_pred hhhccccccCCCCCcceeeeee-EEEcCCcEEEEEcCCCCCHHHHHHH
Confidence 3455555444444333333333 2455678899999999999975443
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.17 Score=51.13 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCcchhHhh
Q psy16310 806 RKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~ 824 (1493)
+..+++.||+|+|||....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 4578999999999998643
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.88 Score=51.46 Aligned_cols=22 Identities=23% Similarity=0.110 Sum_probs=18.8
Q ss_pred cCCcEEEEccCCCchhHHHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFGIP 209 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~lp 209 (1493)
.+.++++.||+|+|||..++..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai 125 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAI 125 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHH
Confidence 6789999999999999876543
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.12 E-value=1.9 Score=49.21 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=18.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHH
Q psy16310 190 KDIVGAAETGSGKTLAFGIPILTGI 214 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~lpil~~l 214 (1493)
..++++|++|+|||..+.. +.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~a-ia~~l 138 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAAC-IANEL 138 (268)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHH
Confidence 3499999999999987553 44544
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.62 Score=52.00 Aligned_cols=45 Identities=13% Similarity=0.285 Sum_probs=27.7
Q ss_pred ceeEEEecccchhccCC-ChhHHHHHHHHhcccCCCCCceEEEEeccccc
Q psy16310 953 KINYLVIDETDRMIESG-HFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001 (1493)
Q Consensus 953 ~l~~lVlDEah~ll~~~-~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~ 1001 (1493)
+.++|||||+|.+.... +...+..++..+. ..+.+++++|++.++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~----~~~~~illits~~~p 136 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIK----EQGKTLLLISADCSP 136 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHH----HcCCcEEEEeCCCCh
Confidence 56899999999875332 2334555555543 123456778777653
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.8 Score=50.65 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=30.9
Q ss_pred cceeEEEecccchhccCC-ChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 952 YKINYLVIDETDRMIESG-HFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 952 ~~l~~lVlDEah~ll~~~-~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
...++|+||..|.+.... ....+..++..+. ..+.++++.|...|..+
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~----~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFNRLI----ESGKQLILTSDRPPSEL 144 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHH----HTTSEEEEEESS-TTTT
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHHHHH----hhCCeEEEEeCCCCccc
Confidence 357899999999876532 2344555555553 24567888887877554
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.56 Score=61.92 Aligned_cols=113 Identities=16% Similarity=0.121 Sum_probs=71.4
Q ss_pred CCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchh
Q psy16310 172 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 251 (1493)
Q Consensus 172 ~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1493)
..+++-|.+++. . ....++|.|..|||||.+-.--+.+.+ ..
T Consensus 3 ~~Ln~~Q~~av~-~--~~g~~lV~AgaGSGKT~~L~~Ria~Li-~~---------------------------------- 44 (715)
T TIGR01075 3 DGLNDKQREAVA-A--PPGNLLVLAGAGSGKTRVLTHRIAWLL-SV---------------------------------- 44 (715)
T ss_pred cccCHHHHHHHc-C--CCCCEEEEecCCCCHHHHHHHHHHHHH-Hc----------------------------------
Confidence 458999999985 3 245899999999999998444333322 11
Q ss_pred hhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccc
Q psy16310 252 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331 (1493)
Q Consensus 252 ~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~ 331 (1493)
.+.+..++|+|+.|+..|..+.+.+..+... ....+.|+|-..+..-+-..+...
T Consensus 45 ---~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~----------------------~~~~~~i~TfHs~~~~iLr~~~~~ 99 (715)
T TIGR01075 45 ---ENASPHSIMAVTFTNKAAAEMRHRIGALLGT----------------------SARGMWIGTFHGLAHRLLRAHHLD 99 (715)
T ss_pred ---CCCCHHHeEeeeccHHHHHHHHHHHHHHhcc----------------------cccCcEEEcHHHHHHHHHHHHHHH
Confidence 0112345999999999999999988876421 012578899887764332222111
Q ss_pred cccccccEEEEecCchh
Q psy16310 332 TELYKINYLVIDETDRM 348 (1493)
Q Consensus 332 ~~l~~i~~lViDEAh~l 348 (1493)
..+ .-.+-|+|+.+..
T Consensus 100 ~g~-~~~f~i~d~~d~~ 115 (715)
T TIGR01075 100 AGL-PQDFQILDSDDQL 115 (715)
T ss_pred hCC-CCCCeecCHHHHH
Confidence 111 1134677887653
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.65 Score=53.89 Aligned_cols=41 Identities=39% Similarity=0.472 Sum_probs=31.1
Q ss_pred HHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhH
Q psy16310 780 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 780 ~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla 822 (1493)
+..|...|. +++-|...+..++..+.+++++|+||||||..
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl 148 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL 148 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH
Confidence 444555554 45667777777777888999999999999975
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.82 Score=51.05 Aligned_cols=18 Identities=17% Similarity=-0.031 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchhHHHH
Q psy16310 190 KDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~ 207 (1493)
..++++||+|+|||....
T Consensus 40 ~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 357899999999997643
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=90.92 E-value=1 Score=55.55 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=27.3
Q ss_pred cceeEEEecccchhccC-CChhHHHHHHHHhcccCCCCCceEEEEeccccc
Q psy16310 952 YKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001 (1493)
Q Consensus 952 ~~l~~lVlDEah~ll~~-~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~ 1001 (1493)
.++++|||||+|.+... .....+..++..+. ....|+++.|-..|.
T Consensus 205 ~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~----~~~k~iIltsd~~P~ 251 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI----ENDKQLFFSSDKSPE 251 (450)
T ss_pred ccCCEEEEeccccccCCHHHHHHHHHHHHHHH----HcCCcEEEECCCCHH
Confidence 35689999999976432 22344555555553 233466666655553
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.77 Score=59.46 Aligned_cols=88 Identities=18% Similarity=0.038 Sum_probs=61.2
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
.-..+++-|.+++- . ...+++|.|..|||||.+.+--+...+...
T Consensus 193 e~~~L~~~Q~~av~-~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~-------------------------------- 237 (684)
T PRK11054 193 ESSPLNPSQARAVV-N--GEDSLLVLAGAGSGKTSVLVARAGWLLARG-------------------------------- 237 (684)
T ss_pred cCCCCCHHHHHHHh-C--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhC--------------------------------
Confidence 33579999999984 2 335789999999999998544433323210
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHH
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~ 322 (1493)
...+-++|+|+.|+..|..+.+.+...... ..|-|+|--.|..
T Consensus 238 ------~~~~~~IL~ltft~~AA~em~eRL~~~lg~------------------------~~v~v~TFHSlal 280 (684)
T PRK11054 238 ------QAQPEQILLLAFGRQAAEEMDERIRERLGT------------------------EDITARTFHALAL 280 (684)
T ss_pred ------CCCHHHeEEEeccHHHHHHHHHHHHHhcCC------------------------CCcEEEeHHHHHH
Confidence 112336999999999999998888765310 2688888887764
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.74 Score=59.60 Aligned_cols=71 Identities=18% Similarity=0.102 Sum_probs=50.5
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..+++-|..|+- . ...+++|.|..|||||.+.+--+. .++...
T Consensus 195 ~~L~~~Q~~av~--~-~~~~~lV~agaGSGKT~vl~~r~a-yLl~~~--------------------------------- 237 (684)
T PRK11054 195 SPLNPSQARAVV--N-GEDSLLVLAGAGSGKTSVLVARAG-WLLARG--------------------------------- 237 (684)
T ss_pred CCCCHHHHHHHh--C-CCCCeEEEEeCCCCHHHHHHHHHH-HHHHhC---------------------------------
Confidence 468999999984 2 335789999999999988544333 222211
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHHhh
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAG 900 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~ 900 (1493)
...+.++|+|+.|+..|..+.+.+....
T Consensus 238 ----~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 238 ----QAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred ----CCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 1223469999999999999988887653
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.5 Score=56.00 Aligned_cols=23 Identities=22% Similarity=0.049 Sum_probs=18.6
Q ss_pred cCCcEEEEccCCCchhHHHHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFGIPI 210 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~lpi 210 (1493)
.+..+++++|||+|||......+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA 158 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLA 158 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999865443
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.27 Score=49.70 Aligned_cols=20 Identities=30% Similarity=0.223 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCchhHHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~l 208 (1493)
+..+++.+|+|+|||.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH
Confidence 46789999999999997543
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=90.64 E-value=1.1 Score=51.12 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.5
Q ss_pred CcEEEEccCCCcchhHhh
Q psy16310 807 KDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~~ 824 (1493)
.++++.||+|+|||.++-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 579999999999997654
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=90.62 E-value=2.2 Score=48.81 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=17.7
Q ss_pred CcEEEEccCCCcchhHhhHHHHHHH
Q psy16310 807 KDIVGAAETGSGKTLAFGIPILTGI 831 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~~lpil~~l 831 (1493)
..+++.|++|+|||..+. .+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l 138 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANEL 138 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHH
Confidence 349999999999997644 344444
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=90.59 E-value=2.9 Score=43.39 Aligned_cols=18 Identities=39% Similarity=0.194 Sum_probs=14.6
Q ss_pred EEEEccCCCchhHHHHHH
Q psy16310 192 IVGAAETGSGKTLAFGIP 209 (1493)
Q Consensus 192 viv~apTGSGKTl~~~lp 209 (1493)
++++|++|+|||......
T Consensus 2 ~~i~G~~G~GKT~l~~~i 19 (165)
T cd01120 2 ILVFGPTGSGKTTLALQL 19 (165)
T ss_pred eeEeCCCCCCHHHHHHHH
Confidence 678999999999975443
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.78 Score=54.02 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
++-+.++||||.|||..-
T Consensus 203 ~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL 220 (407)
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 678999999999999763
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=90.49 E-value=4.4 Score=52.34 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=17.6
Q ss_pred ceeEEEecccchhccCCChhHHHHHHHH
Q psy16310 953 KINYLVIDETDRMIESGHFPELKNILDR 980 (1493)
Q Consensus 953 ~l~~lVlDEah~ll~~~~~~~l~~il~~ 980 (1493)
.+.+|||||+|.|... ....+..++..
T Consensus 869 ~v~IIILDEID~L~kK-~QDVLYnLFR~ 895 (1164)
T PTZ00112 869 NVSILIIDEIDYLITK-TQKVLFTLFDW 895 (1164)
T ss_pred cceEEEeehHhhhCcc-HHHHHHHHHHH
Confidence 4568999999998764 22334445443
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.52 Score=47.24 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=13.4
Q ss_pred eeEEEecccchhccCC
Q psy16310 954 INYLVIDETDRMIESG 969 (1493)
Q Consensus 954 l~~lVlDEah~ll~~~ 969 (1493)
-.+|+|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4789999999987665
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=90.25 E-value=1.2 Score=54.54 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.3
Q ss_pred CcEEEEccCCCcchhHh
Q psy16310 807 KDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~ 823 (1493)
..+++.||+|+|||...
T Consensus 137 n~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL 153 (405)
T ss_pred CeEEEECCCCCcHHHHH
Confidence 35789999999999764
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=90.18 E-value=1.5 Score=48.45 Aligned_cols=15 Identities=27% Similarity=0.242 Sum_probs=13.3
Q ss_pred cEEEEccCCCchhHH
Q psy16310 191 DIVGAAETGSGKTLA 205 (1493)
Q Consensus 191 dviv~apTGSGKTl~ 205 (1493)
-++++||+|+|||-.
T Consensus 36 ~l~l~G~~G~GKTHL 50 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL 50 (219)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred ceEEECCCCCCHHHH
Confidence 488999999999984
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.43 Score=59.61 Aligned_cols=71 Identities=13% Similarity=0.038 Sum_probs=50.4
Q ss_pred HHHHhhhhhhhcc---------CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhh
Q psy16310 176 KIQSMVMPSALLA---------RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 246 (1493)
Q Consensus 176 ~iQ~~~i~~~l~~---------~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1493)
|+|.-.+- .+.+ -+.+++.-|=|.|||......++.++.-.
T Consensus 1 PwQ~fi~~-~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----------------------------- 50 (477)
T PF03354_consen 1 PWQKFILR-SIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----------------------------- 50 (477)
T ss_pred CcHHHHHH-HHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-----------------------------
Confidence 56776664 3322 23578888999999997666666555321
Q ss_pred hcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCC
Q psy16310 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY 285 (1493)
Q Consensus 247 ~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~ 285 (1493)
+..+..+++.+++++-|..+++.+..+...
T Consensus 51 ---------g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 51 ---------GEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred ---------CccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 234567999999999999999988887653
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=90.18 E-value=1.6 Score=54.22 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHH
Q psy16310 190 KDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~ 206 (1493)
..++++||+|+|||...
T Consensus 149 ~~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL 165 (450)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999864
|
|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.73 Score=51.48 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=31.7
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHh
Q psy16310 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832 (1493)
Q Consensus 765 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~ 832 (1493)
..+.+|+++++|+.+.+.+. ....=++|.||||||||.. +..++.++.
T Consensus 103 ~~i~~~e~LglP~i~~~~~~-------------------~~~GLILVTGpTGSGKSTT-lAamId~iN 150 (353)
T COG2805 103 SKIPTLEELGLPPIVRELAE-------------------SPRGLILVTGPTGSGKSTT-LAAMIDYIN 150 (353)
T ss_pred ccCCCHHHcCCCHHHHHHHh-------------------CCCceEEEeCCCCCcHHHH-HHHHHHHHh
Confidence 44567888888876654221 1223688999999999876 445666663
|
|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=90.11 E-value=0.79 Score=51.70 Aligned_cols=66 Identities=18% Similarity=0.331 Sum_probs=52.3
Q ss_pred HHHHHHhcCCCeEEEEechhhccCCCCC--------CcEEEEecCCCChHHHHHHHhccccCCCC-CeEEEEecC
Q psy16310 585 KNLDRFRDQNNSILLATDVAARGLDIPG--------IEHVIHYHVPRTSEIYIHRSGRTARANNE-GLTVVLIES 650 (1493)
Q Consensus 585 ~vl~~Fr~g~~~VLVaTdv~~rGlDip~--------v~~VI~yd~P~s~~~yiQR~GRagR~g~~-G~~i~l~~~ 650 (1493)
...+.|.+|+..|+|.|+.++.||-+.. -++-|...+|++....+|..||+-|.|.. .-.|.++..
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t 126 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVT 126 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeec
Confidence 4567899999999999999999997743 22446788999999999999999998864 444554433
|
|
| >COG3973 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.06 E-value=1.2 Score=54.10 Aligned_cols=106 Identities=15% Similarity=0.067 Sum_probs=67.7
Q ss_pred ccCCCHH-HHHHHHHCCCCCChH-------HHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccC
Q psy16310 155 KFNIPET-IIRALYQKGFKTPTK-------IQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 226 (1493)
Q Consensus 155 ~l~l~~~-l~~~l~~~g~~~pt~-------iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~ 226 (1493)
+.++... |+.+|.+.--.+++. -|-+.|. -..++-++|+|..|||||.+++--+...+++.+..
T Consensus 186 d~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR--~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~------ 257 (747)
T COG3973 186 DTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIR--FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGP------ 257 (747)
T ss_pred CCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHh--ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccc------
Confidence 3445555 446666654333333 2444443 12356789999999999999765555555443211
Q ss_pred CCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHh
Q psy16310 227 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 306 (1493)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l 306 (1493)
... .-+||+.|.+-+..=+.+++-+++..
T Consensus 258 -----------------------------l~~-k~vlvl~PN~vFleYis~VLPeLGe~--------------------- 286 (747)
T COG3973 258 -----------------------------LQA-KPVLVLGPNRVFLEYISRVLPELGEE--------------------- 286 (747)
T ss_pred -----------------------------ccc-CceEEEcCcHHHHHHHHHhchhhccC---------------------
Confidence 111 22999999999999888888777532
Q ss_pred cCCCCEEEeCcHHHHHH
Q psy16310 307 NKCPHILVATPGRLWEF 323 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~~~ 323 (1493)
.|+..|++-+.-.
T Consensus 287 ----~V~q~Tf~e~a~~ 299 (747)
T COG3973 287 ----GVVQETFEEWALA 299 (747)
T ss_pred ----ceeeccHHHHHHH
Confidence 6888898877443
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=90.00 E-value=0.76 Score=60.68 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=51.6
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..++|-|.+++.. ....++|.|..|||||.+..--+.. ++...
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~-Li~~~--------------------------------- 45 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAW-LLSVE--------------------------------- 45 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHH-HHHcC---------------------------------
Confidence 4589999999852 3358999999999999884433333 32210
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHHhh
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAG 900 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~ 900 (1493)
..++.++|+|+.|+..|..+.+.+..+.
T Consensus 46 ----~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 46 ----NASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred ----CCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 1233469999999999999999888764
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=89.98 E-value=1.8 Score=46.48 Aligned_cols=21 Identities=19% Similarity=0.089 Sum_probs=15.9
Q ss_pred EEEEccCCCcchhHhhHHHHH
Q psy16310 809 IVGAAETGSGKTLAFGIPILT 829 (1493)
Q Consensus 809 vlv~apTGsGKTla~~lpil~ 829 (1493)
+++.||+|+|||...+--+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 688999999999865544443
|
A related protein is found in archaea. |
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=89.86 E-value=1.1 Score=54.18 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=24.5
Q ss_pred ChHHHHhhhhhhhccCCcEEEEccCCCchhHHHH
Q psy16310 174 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 174 pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~ 207 (1493)
|-......+. ++..++++++++|+|+|||..+.
T Consensus 180 ~e~~le~l~~-~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILK-RLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHH-HHhcCCCEEEECCCCCCHHHHHH
Confidence 3334444554 56678999999999999998754
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.61 Score=52.94 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=19.8
Q ss_pred ceeEEEecccchhccCCCh--hHHHHHHHHh
Q psy16310 953 KINYLVIDETDRMIESGHF--PELKNILDRV 981 (1493)
Q Consensus 953 ~l~~lVlDEah~ll~~~~~--~~l~~il~~l 981 (1493)
.+++|||||.|.++..... ..+.+.++.|
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L 175 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFL 175 (302)
T ss_pred CCcEEEeechHHHhcccHHHHHHHHHHHHHH
Confidence 5789999999999876553 2334444444
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.82 E-value=1.4 Score=50.37 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCcchhHh
Q psy16310 805 ARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~ 823 (1493)
.+.++++.|+||+|||..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL 134 (266)
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3578999999999999653
|
|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=89.63 E-value=0.76 Score=60.64 Aligned_cols=111 Identities=17% Similarity=0.134 Sum_probs=70.7
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.+++-|.+++. . ....++|.|..|||||.+-.--+...+ ..
T Consensus 9 ~Ln~~Q~~av~-~--~~g~~lV~AgaGSGKT~vl~~Ria~Li-~~----------------------------------- 49 (721)
T PRK11773 9 SLNDKQREAVA-A--PLGNMLVLAGAGSGKTRVLVHRIAWLM-QV----------------------------------- 49 (721)
T ss_pred hcCHHHHHHHh-C--CCCCEEEEecCCCCHHHHHHHHHHHHH-Hc-----------------------------------
Confidence 58999999985 3 245899999999999998443333222 11
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcccc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~ 332 (1493)
.+....++|+|+-|+..|.++.+.+..+... . ...+.|+|-..+..-+-..+....
T Consensus 50 --~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~-----------~-----------~~~~~i~TfHs~~~~iLr~~~~~~ 105 (721)
T PRK11773 50 --ENASPYSIMAVTFTNKAAAEMRHRIEQLLGT-----------S-----------QGGMWVGTFHGLAHRLLRAHWQDA 105 (721)
T ss_pred --CCCChhHeEeeeccHHHHHHHHHHHHHHhcc-----------C-----------CCCCEEEcHHHHHHHHHHHHHHHh
Confidence 0122345999999999999999988876421 0 015788998887654322221111
Q ss_pred ccccccEEEEecCch
Q psy16310 333 ELYKINYLVIDETDR 347 (1493)
Q Consensus 333 ~l~~i~~lViDEAh~ 347 (1493)
.+ .-.+-|+|+.+.
T Consensus 106 g~-~~~f~i~d~~d~ 119 (721)
T PRK11773 106 NL-PQDFQILDSDDQ 119 (721)
T ss_pred CC-CCCCeecCHHHH
Confidence 11 123567888764
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=89.29 E-value=0.65 Score=60.53 Aligned_cols=70 Identities=16% Similarity=0.002 Sum_probs=49.3
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.++|-|.+++.. ....++|.|..|||||.+...-+...+...
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~----------------------------------- 43 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGC----------------------------------- 43 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhc-----------------------------------
Confidence 378999999852 234889999999999988544444333211
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhh
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAG 900 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~ 900 (1493)
...+.++|+|+.|+.-|..+.+.+..+.
T Consensus 44 ---~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 44 ---GYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred ---CCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 1123458999999999988888887653
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=89.28 E-value=0.83 Score=51.92 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHH
Q psy16310 190 KDIVGAAETGSGKTLA 205 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~ 205 (1493)
.+++++|+||-|||.+
T Consensus 62 p~lLivG~snnGKT~I 77 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI 77 (302)
T ss_pred CceEEecCCCCcHHHH
Confidence 4899999999999995
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=89.25 E-value=0.78 Score=54.04 Aligned_cols=17 Identities=35% Similarity=0.433 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHH
Q psy16310 189 RKDIVGAAETGSGKTLA 205 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~ 205 (1493)
++.+.++||||.|||..
T Consensus 203 ~~vi~LVGPTGVGKTTT 219 (407)
T COG1419 203 KRVIALVGPTGVGKTTT 219 (407)
T ss_pred CcEEEEECCCCCcHHHH
Confidence 67889999999999986
|
|
| >PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase | Back alignment and domain information |
|---|
Probab=89.21 E-value=0.12 Score=54.22 Aligned_cols=85 Identities=19% Similarity=0.173 Sum_probs=31.9
Q ss_pred eEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccE
Q psy16310 260 LYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINY 339 (1493)
Q Consensus 260 ~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~ 339 (1493)
.+++|.+|+.+-+..+++.+.......+++....... ............|-+..|..+... -...++
T Consensus 27 ~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~i~f~~Pd~l~~~----------~~~~Dl 93 (177)
T PF05127_consen 27 IRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQIIKLRFNKQRIEFVAPDELLAE----------KPQADL 93 (177)
T ss_dssp --EEEE-SS--S-HHHHHCC-----------------------------CCC--B--HHHHCCT--------------SC
T ss_pred ceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---ccccccccccceEEEECCHHHHhC----------cCCCCE
Confidence 4699999999988887776655444333332000000 000001112346777778776221 113588
Q ss_pred EEEecCchhhhcCChhhHHHHH
Q psy16310 340 LVIDETDRMIESGHFPELKNIL 361 (1493)
Q Consensus 340 lViDEAh~ll~~~~~~~l~~il 361 (1493)
||||||=.+ ..+.+.+++
T Consensus 94 liVDEAAaI----p~p~L~~ll 111 (177)
T PF05127_consen 94 LIVDEAAAI----PLPLLKQLL 111 (177)
T ss_dssp EEECTGGGS-----HHHHHHHH
T ss_pred EEEechhcC----CHHHHHHHH
Confidence 999999865 345555554
|
This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B. |
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=89.16 E-value=1.4 Score=49.13 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCcchhHhh
Q psy16310 805 ARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~ 824 (1493)
.+..+++.||+|+|||..+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45689999999999997643
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=89.11 E-value=1.3 Score=55.63 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=29.3
Q ss_pred ceeEEEecccchhccCCC-hhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 953 KINYLVIDETDRMIESGH-FPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 953 ~l~~lVlDEah~ll~~~~-~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
++++||||++|.+..... ...+..++..+. ..+.++++.|-..|..+
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~----e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLH----NANKQIVLSSDRPPKQL 424 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHH----hcCCCEEEecCCChHhh
Confidence 568999999998754332 344556666554 23467777665555443
|
|
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.10 E-value=1.8 Score=55.19 Aligned_cols=142 Identities=20% Similarity=0.235 Sum_probs=81.6
Q ss_pred HHHHHHCCCCCChHHHHhhhhhhhccCC-cEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHH
Q psy16310 163 IRALYQKGFKTPTKIQSMVMPSALLARK-DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 241 (1493)
Q Consensus 163 ~~~l~~~g~~~pt~iQ~~~i~~~l~~~~-dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1493)
-..+.....+.+..-|.+.+..++..++ -+++.|.=|=|||.+..|.+. .+...
T Consensus 204 ~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~------------------------ 258 (758)
T COG1444 204 PRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARL------------------------ 258 (758)
T ss_pred CHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHh------------------------
Confidence 3445666666666666666665554444 678999999999999887762 22110
Q ss_pred HHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHH
Q psy16310 242 LEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321 (1493)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~ 321 (1493)
....+++|.+||.+-++.++..+.+-....|++-......... ....-.+...|=+-+|....
T Consensus 259 ---------------~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~--~~~~~~~~~~i~y~~P~~a~ 321 (758)
T COG1444 259 ---------------AGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDALGE--IREVSGDGFRIEYVPPDDAQ 321 (758)
T ss_pred ---------------cCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccccccccccc--eeeecCCceeEEeeCcchhc
Confidence 1145799999999998888777665544444332222111000 00000011234455555431
Q ss_pred HHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHh
Q psy16310 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDR 363 (1493)
Q Consensus 322 ~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~ 363 (1493)
. .-++||||||=.+ ..+.+..++..
T Consensus 322 ------------~-~~DllvVDEAAaI----plplL~~l~~~ 346 (758)
T COG1444 322 ------------E-EADLLVVDEAAAI----PLPLLHKLLRR 346 (758)
T ss_pred ------------c-cCCEEEEehhhcC----ChHHHHHHHhh
Confidence 0 1478999999865 44556666543
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=89.08 E-value=0.74 Score=60.00 Aligned_cols=112 Identities=17% Similarity=0.087 Sum_probs=69.8
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.+++-|.+++. .. ...++|.|..|||||.+.+--+.+.+..
T Consensus 2 ~Ln~~Q~~av~-~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~------------------------------------ 42 (672)
T PRK10919 2 RLNPGQQQAVE-FV--TGPCLVLAGAGSGKTRVITNKIAHLIRG------------------------------------ 42 (672)
T ss_pred CCCHHHHHHHh-CC--CCCEEEEecCCCCHHHHHHHHHHHHHHh------------------------------------
Confidence 47889999986 32 3588999999999999854444433321
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcccc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~ 332 (1493)
.+....++|+|+.|+..|..+.+.+..+.... ....+.|+|-..|..-+-..+....
T Consensus 43 --~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~---------------------~~~~v~i~TfHS~~~~iLr~~~~~~ 99 (672)
T PRK10919 43 --CGYQARHIAAVTFTNKAAREMKERVAQTLGRK---------------------EARGLMISTFHTLGLDIIKREYAAL 99 (672)
T ss_pred --cCCCHHHeeeEechHHHHHHHHHHHHHHhCcc---------------------cccCcEEEcHHHHHHHHHHHHHHHh
Confidence 01123459999999999999988887754210 0125788998887643322211110
Q ss_pred ccccccEEEEecCch
Q psy16310 333 ELYKINYLVIDETDR 347 (1493)
Q Consensus 333 ~l~~i~~lViDEAh~ 347 (1493)
.+ .-.+-|+|+.+.
T Consensus 100 g~-~~~~~i~d~~~~ 113 (672)
T PRK10919 100 GM-KSNFSLFDDTDQ 113 (672)
T ss_pred CC-CCCCeeCCHHHH
Confidence 01 123456777664
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=89.06 E-value=2.9 Score=49.49 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=17.3
Q ss_pred CCcEEEEccCCCcchhHhhHHH
Q psy16310 806 RKDIVGAAETGSGKTLAFGIPI 827 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~lpi 827 (1493)
.+.++++||||+|||......+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHH
Confidence 4678999999999998754433
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=89.02 E-value=1.8 Score=49.52 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCchhHHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~l 208 (1493)
..++++.||+|+|||..+-+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred cceEEEEcCCCCCHHHHHHH
Confidence 35899999999999987543
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=88.97 E-value=0.43 Score=51.38 Aligned_cols=39 Identities=36% Similarity=0.392 Sum_probs=31.6
Q ss_pred HHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHH
Q psy16310 166 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 166 l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~ 206 (1493)
|.+.|+ .++-|...+...+..+..+++++|||||||...
T Consensus 4 l~~~g~--~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 4 LIAQGT--FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 344555 667788888878888999999999999999863
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=88.92 E-value=1.4 Score=49.23 Aligned_cols=43 Identities=14% Similarity=0.325 Sum_probs=25.4
Q ss_pred ceeEEEecccchhccC-CChhHHHHHHHHhcccCCCCCceEEEEecccc
Q psy16310 953 KINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTFVFSATLT 1000 (1493)
Q Consensus 953 ~l~~lVlDEah~ll~~-~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~ 1000 (1493)
++++||||++|.+... .....+..++..+. ..+.+ ++++++.+
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~----~~g~~-ilits~~~ 140 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLR----DSGRR-LLLAASKS 140 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHH----hcCCE-EEEeCCCC
Confidence 4578999999976433 22345666666553 12344 55555543
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=88.87 E-value=3.4 Score=53.31 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.6
Q ss_pred cE-EEEccCCCchhHHH
Q psy16310 191 DI-VGAAETGSGKTLAF 206 (1493)
Q Consensus 191 dv-iv~apTGSGKTl~~ 206 (1493)
++ +|.|+||+|||++.
T Consensus 782 nvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 782 QILYISGMPGTGKTATV 798 (1164)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 44 59999999999984
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=88.82 E-value=2.3 Score=52.03 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHHH
Q psy16310 190 KDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~ 206 (1493)
..++++||+|+|||...
T Consensus 137 n~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL 153 (405)
T ss_pred CeEEEECCCCCcHHHHH
Confidence 35789999999999864
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.80 E-value=2.1 Score=50.01 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=16.1
Q ss_pred CcEEEEccCCCcchhHhhH
Q psy16310 807 KDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~~l 825 (1493)
.++|+.||.|+|||..+-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 4899999999999977544
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=88.47 E-value=2.5 Score=45.78 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHHH
Q psy16310 191 DIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 191 dviv~apTGSGKTl~~~ 207 (1493)
-+++++|||+|||....
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 46789999999998743
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=88.24 E-value=1.8 Score=48.54 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
+..++++||+|+|||...
T Consensus 45 ~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 358999999999999653
|
|
| >KOG1131|consensus | Back alignment and domain information |
|---|
Probab=88.08 E-value=1.8 Score=51.51 Aligned_cols=99 Identities=19% Similarity=0.153 Sum_probs=50.2
Q ss_pred CCCCChHHHHhh---hhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC---ccchHHHHHHHHHHH
Q psy16310 170 GFKTPTKIQSMV---MPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND---SGLEEEAEEVLEELE 243 (1493)
Q Consensus 170 g~~~pt~iQ~~~---i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 243 (1493)
-|..-+|-|-+- +..+|..+.+.++-+|+|+|||.+.+-.++..-...... +-+. +.+-..+++.+.+++
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~----~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDE----HRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcc----cceEEEecCcchHHHHHHHHHH
Confidence 345556666543 233555567899999999999988555444433221100 0000 122334455555555
Q ss_pred HhhhcchhhhhcccCceEEEEEcccHHHHH
Q psy16310 244 EESANTTEFVKKTRNKLYALILAPTRELAI 273 (1493)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~aLiL~PTreLa~ 273 (1493)
..-.=.... -........|-|+-.+.||.
T Consensus 89 ~l~~y~~k~-~g~~~~flglglssRKNlCi 117 (755)
T KOG1131|consen 89 RLMDYREKH-LGYPEPFLGLGLSSRKNLCI 117 (755)
T ss_pred HHHHHHHHh-cCCCCceeeeeecccccccc
Confidence 442111110 01122456777777766664
|
|
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.05 E-value=2.4 Score=54.14 Aligned_cols=150 Identities=20% Similarity=0.256 Sum_probs=88.0
Q ss_pred HHHCCCCCCcHHHHhhHHHhhccCC-cEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHH
Q psy16310 783 LYQKGFKTPTKIQSMVMPSALLARK-DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 861 (1493)
Q Consensus 783 l~~~g~~~pt~iQ~~~i~~~l~~~~-dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (1493)
+.....+.+..-|.+.+..++..++ -+++.|.=|=|||.+..+.+.... ..
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~-~~--------------------------- 258 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAA-RL--------------------------- 258 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHH-Hh---------------------------
Confidence 5555555555555556655554444 688899999999999887773221 10
Q ss_pred hhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHH
Q psy16310 862 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 941 (1493)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l 941 (1493)
....+++|.+||.+=+..+...+.+-....|.+-.+....... ....-.+...|=+-+|....
T Consensus 259 ------------~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~--~~~~~~~~~~i~y~~P~~a~--- 321 (758)
T COG1444 259 ------------AGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDALGE--IREVSGDGFRIEYVPPDDAQ--- 321 (758)
T ss_pred ------------cCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccccccccccc--eeeecCCceeEEeeCcchhc---
Confidence 1145799999999988888777766554444332221111000 00000012235555665431
Q ss_pred HhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccc
Q psy16310 942 QLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 1000 (1493)
Q Consensus 942 ~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~ 1000 (1493)
..-++||+|||=-+ ..+-+..++... +.++||.|+.
T Consensus 322 ----------~~~DllvVDEAAaI----plplL~~l~~~~---------~rv~~sTTIh 357 (758)
T COG1444 322 ----------EEADLLVVDEAAAI----PLPLLHKLLRRF---------PRVLFSTTIH 357 (758)
T ss_pred ----------ccCCEEEEehhhcC----ChHHHHHHHhhc---------CceEEEeeec
Confidence 01478999999764 235566665543 5789999986
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=88.02 E-value=1.4 Score=53.05 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=19.5
Q ss_pred hhccCCcEEEEccCCCcchhHhh
Q psy16310 802 ALLARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 802 ~l~~~~dvlv~apTGsGKTla~~ 824 (1493)
.+..++++++.+|+|+|||..+.
T Consensus 190 ~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 190 RLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHhcCCCEEEECCCCCCHHHHHH
Confidence 55578899999999999997654
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=87.99 E-value=3 Score=45.16 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=26.5
Q ss_pred eeEEEecccchhcc-CCChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 954 INYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 954 l~~lVlDEah~ll~-~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
.++|+||-+-+... ......+..++..+ .+..-.+.+|||......
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~-----~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEAL-----NPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHH-----SSSEEEEEEEGGGGGHHH
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhc-----CCccceEEEecccChHHH
Confidence 56777777755321 12234556666655 244567788999975543
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=87.91 E-value=2.9 Score=51.58 Aligned_cols=47 Identities=21% Similarity=0.296 Sum_probs=26.6
Q ss_pred ceeEEEecccchhccCCC-hhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 953 KINYLVIDETDRMIESGH-FPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 953 ~l~~lVlDEah~ll~~~~-~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..++|+|||+|.+.+... ...+..++..+.. .+.++++.|-..|..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~----~~k~iIitsd~~p~~l 241 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHD----SGKQIVICSDREPQKL 241 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHH----cCCeEEEECCCCHHHH
Confidence 357899999998765422 2345555554431 2345555554444433
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=87.86 E-value=2.6 Score=47.23 Aligned_cols=16 Identities=19% Similarity=0.127 Sum_probs=14.2
Q ss_pred CcEEEEccCCCchhHH
Q psy16310 190 KDIVGAAETGSGKTLA 205 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~ 205 (1493)
..++++||+|+|||..
T Consensus 46 ~~l~l~G~~G~GKTHL 61 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL 61 (234)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4688999999999976
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=87.85 E-value=2.5 Score=53.12 Aligned_cols=71 Identities=17% Similarity=0.072 Sum_probs=51.0
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.|.|+|...+. .+..++-.++..+=..|||.+.+..++.....
T Consensus 59 ~L~p~Q~~i~~-~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~------------------------------------ 101 (534)
T PHA02533 59 QMRDYQKDMLK-IMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF------------------------------------ 101 (534)
T ss_pred CCcHHHHHHHH-HHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh------------------------------------
Confidence 48899999886 44444555677888899999876555543321
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcC
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGK 284 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~ 284 (1493)
..+..+++++|++.-|..+.+.++.+..
T Consensus 102 ----~~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 102 ----NKDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred ----CCCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 1234799999999999988887765543
|
|
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.66 E-value=1.1 Score=55.77 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=47.0
Q ss_pred EEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhc
Q psy16310 908 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVT 982 (1493)
Q Consensus 908 ~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~ 982 (1493)
..-.||...+...+-.++ --|=+-||++..-|......- -++++||+|.|...-.++.-..+++.|-
T Consensus 380 R~sLGGvrDEAEIRGHRR--TYIGamPGrIiQ~mkka~~~N------Pv~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 380 RISLGGVRDEAEIRGHRR--TYIGAMPGKIIQGMKKAGVKN------PVFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred EEecCccccHHHhccccc--cccccCChHHHHHHHHhCCcC------CeEEeechhhccCCCCCChHHHHHhhcC
Confidence 344588877776654433 234456999999887543211 3699999999988877777888888774
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=87.59 E-value=2.8 Score=51.70 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.8
Q ss_pred CcEEEEccCCCchhHH
Q psy16310 190 KDIVGAAETGSGKTLA 205 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~ 205 (1493)
..++++|++|+|||..
T Consensus 142 npl~i~G~~G~GKTHL 157 (450)
T PRK14087 142 NPLFIYGESGMGKTHL 157 (450)
T ss_pred CceEEECCCCCcHHHH
Confidence 4588999999999964
|
|
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=87.56 E-value=0.79 Score=52.58 Aligned_cols=72 Identities=24% Similarity=0.285 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHH
Q psy16310 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 236 (1493)
Q Consensus 157 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (1493)
.+++..+....-..|...++-|...+..++..+.|+++++-||||||. +++.+........
T Consensus 141 Kf~k~~ltl~dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT-----lLNal~~~i~~~e-------------- 201 (355)
T COG4962 141 KFPKIKLTLLDLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT-----LLNALSGFIDSDE-------------- 201 (355)
T ss_pred ccccccccHHHHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH-----HHHHHHhcCCCcc--------------
Q ss_pred HHHHHHHHhhhcchhhhhcccCceEEEEEcccHHH
Q psy16310 237 EVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271 (1493)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreL 271 (1493)
+++.+=-|.||
T Consensus 202 ------------------------RvItiEDtaEL 212 (355)
T COG4962 202 ------------------------RVITIEDTAEL 212 (355)
T ss_pred ------------------------cEEEEeehhhh
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=87.50 E-value=2.8 Score=51.60 Aligned_cols=21 Identities=24% Similarity=0.102 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCCcchhHhhH
Q psy16310 805 ARKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~l 825 (1493)
.|.-++++||||+|||.+...
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred CCcEEEEECCCCccHHHHHHH
Confidence 456788999999999987544
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=87.26 E-value=2.1 Score=47.73 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCcchhHh
Q psy16310 805 ARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~ 823 (1493)
.+..++++||+|+|||...
T Consensus 41 ~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467999999999999653
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=87.18 E-value=3.2 Score=48.54 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=16.9
Q ss_pred CcEEEEccCCCchhHHHHHH
Q psy16310 190 KDIVGAAETGSGKTLAFGIP 209 (1493)
Q Consensus 190 ~dviv~apTGSGKTl~~~lp 209 (1493)
.++|+.+|.|+|||..+-+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~li 68 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLI 68 (436)
T ss_pred ceeEEECCCCCCHHHHHHHH
Confidence 38999999999999986553
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=87.15 E-value=2.8 Score=51.56 Aligned_cols=22 Identities=23% Similarity=0.060 Sum_probs=17.1
Q ss_pred CCcEEEEccCCCchhHHHHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFGIPI 210 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~lpi 210 (1493)
++-+.++||||+|||......+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 4567899999999999754433
|
|
| >KOG0742|consensus | Back alignment and domain information |
|---|
Probab=87.13 E-value=0.69 Score=53.25 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=28.4
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhH
Q psy16310 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 770 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla 822 (1493)
|++.-|++.|-+.+.++-..+-.---.+ + --+|++..+|+|+|||++
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~h~----a--pfRNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANTKKHQ----A--PFRNILFYGPPGTGKTMF 400 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhccccccc----c--hhhheeeeCCCCCCchHH
Confidence 4555678887777765433211100000 0 126999999999999975
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=86.99 E-value=3.5 Score=51.77 Aligned_cols=72 Identities=17% Similarity=0.067 Sum_probs=52.0
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.|.|+|...+.. +..++-.++..+=..|||.+....++...+.
T Consensus 59 ~L~p~Q~~i~~~-~~~~R~~ii~~aRq~GKStl~a~~al~~a~~------------------------------------ 101 (534)
T PHA02533 59 QMRDYQKDMLKI-MHKNRFNACNLSRQLGKTTVVAIFLLHYVCF------------------------------------ 101 (534)
T ss_pred CCcHHHHHHHHH-HhcCeEEEEEEcCcCChHHHHHHHHHHHHHh------------------------------------
Confidence 578999999863 4344555778888999998876555433321
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhCC
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKY 902 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~ 902 (1493)
.++..+++++|++.-|..+.+.++.+...
T Consensus 102 ----~~~~~v~i~A~~~~QA~~vF~~ik~~ie~ 130 (534)
T PHA02533 102 ----NKDKNVGILAHKASMAAEVLDRTKQAIEL 130 (534)
T ss_pred ----CCCCEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 12347999999999999998888776544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1493 | ||||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 1e-38 | ||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 6e-06 | ||
| 1hv8_A | 367 | Crystal Structure Of A Dead Box Protein From The Hy | 7e-38 | ||
| 1hv8_A | 367 | Crystal Structure Of A Dead Box Protein From The Hy | 3e-04 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 3e-34 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 7e-08 | ||
| 2z0m_A | 337 | Crystal Structure Of Hypothetical Atp-Dependent Rna | 3e-34 | ||
| 2z0m_A | 337 | Crystal Structure Of Hypothetical Atp-Dependent Rna | 4e-07 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 3e-34 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 7e-08 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 3e-34 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 7e-08 | ||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 4e-34 | ||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 7e-08 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 4e-34 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 3e-05 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 7e-34 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 6e-08 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 7e-34 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 8e-08 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 8e-34 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 2e-04 | ||
| 1xtk_A | 390 | Structure Of Decd To Dead Mutation Of Human Uap56 L | 2e-31 | ||
| 1xtk_A | 390 | Structure Of Decd To Dead Mutation Of Human Uap56 L | 3e-07 | ||
| 1xti_A | 391 | Structure Of Wildtype Human Uap56 Length = 391 | 7e-31 | ||
| 1xti_A | 391 | Structure Of Wildtype Human Uap56 Length = 391 | 4e-07 | ||
| 1xtj_A | 386 | Structure Of Human Uap56 In Complex With Adp Length | 1e-30 | ||
| 1xtj_A | 386 | Structure Of Human Uap56 In Complex With Adp Length | 4e-07 | ||
| 3sqw_A | 579 | Structure Of Mss116p (Nte Deletion) Bound To Ssrna | 3e-29 | ||
| 3sqw_A | 579 | Structure Of Mss116p (Nte Deletion) Bound To Ssrna | 5e-05 | ||
| 3i5x_A | 563 | Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len | 6e-29 | ||
| 3i5x_A | 563 | Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len | 7e-05 | ||
| 3sqx_A | 512 | Structure Of Mss116p (Nte And C-Tail Double Deletio | 7e-29 | ||
| 3sqx_A | 512 | Structure Of Mss116p (Nte And C-Tail Double Deletio | 8e-05 | ||
| 3ber_A | 249 | Human Dead-Box Rna-Helicase Ddx47, Conserved Domain | 8e-26 | ||
| 3ber_A | 249 | Human Dead-Box Rna-Helicase Ddx47, Conserved Domain | 3e-07 | ||
| 2zu6_A | 388 | Crystal Structure Of The Eif4a-Pdcd4 Complex Length | 1e-25 | ||
| 2zu6_A | 388 | Crystal Structure Of The Eif4a-Pdcd4 Complex Length | 2e-06 | ||
| 3eiq_A | 414 | Crystal Structure Of Pdcd4-eif4a Length = 414 | 1e-25 | ||
| 3eiq_A | 414 | Crystal Structure Of Pdcd4-eif4a Length = 414 | 2e-06 | ||
| 1wrb_A | 253 | Crystal Structure Of The N-Terminal Reca-Like Domai | 7e-25 | ||
| 1wrb_A | 253 | Crystal Structure Of The N-Terminal Reca-Like Domai | 3e-07 | ||
| 4a4d_A | 253 | Crystal Structure Of The N-Terminal Domain Of The H | 1e-24 | ||
| 4a4d_A | 253 | Crystal Structure Of The N-Terminal Domain Of The H | 3e-05 | ||
| 3fe2_A | 242 | Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D | 1e-24 | ||
| 3fe2_A | 242 | Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D | 4e-05 | ||
| 2vso_A | 395 | Crystal Structure Of A Translation Initiation Compl | 2e-24 | ||
| 2vso_A | 395 | Crystal Structure Of A Translation Initiation Compl | 5e-04 | ||
| 3fmp_B | 479 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 1e-21 | ||
| 1fuu_A | 394 | Yeast Initiation Factor 4a Length = 394 | 1e-21 | ||
| 3ews_A | 445 | Human Dead-Box Rna-Helicase Ddx19 In Complex With A | 2e-21 | ||
| 3g0h_A | 424 | Human Dead-box Rna Helicase Ddx19, In Complex With | 2e-21 | ||
| 3fht_A | 412 | Crystal Structure Of Human Dbp5 In Complex With Amp | 2e-21 | ||
| 2gxq_A | 207 | Hera N-Terminal Domain In Complex With Amp, Crystal | 8e-21 | ||
| 3mwj_A | 207 | Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Ap | 2e-20 | ||
| 1q0u_A | 219 | Crystal Structure Of The Bstdead N-Terminal Domain | 9e-19 | ||
| 1q0u_A | 219 | Crystal Structure Of The Bstdead N-Terminal Domain | 5e-07 | ||
| 3pey_A | 395 | S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length | 1e-18 | ||
| 3pew_A | 395 | S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 | 1e-18 | ||
| 2p6n_A | 191 | Human Dead-box Rna Helicase Ddx41, Helicase Domain | 3e-17 | ||
| 2p6n_A | 191 | Human Dead-box Rna Helicase Ddx41, Helicase Domain | 4e-17 | ||
| 3bor_A | 237 | Crystal Structure Of The Deadc Domain Of Human Tran | 1e-16 | ||
| 3bor_A | 237 | Crystal Structure Of The Deadc Domain Of Human Tran | 1e-06 | ||
| 3iuy_A | 228 | Crystal Structure Of Ddx53 Dead-Box Domain Length = | 2e-16 | ||
| 3iuy_A | 228 | Crystal Structure Of Ddx53 Dead-Box Domain Length = | 5e-16 | ||
| 3iuy_A | 228 | Crystal Structure Of Ddx53 Dead-Box Domain Length = | 8e-04 | ||
| 2pl3_A | 236 | Human Dead-Box Rna Helicase Ddx10, Dead Domain In C | 4e-16 | ||
| 3fho_B | 508 | Structure Of S. Pombe Dbp5 Length = 508 | 5e-16 | ||
| 2hjv_A | 163 | Structure Of The Second Domain (Residues 207-368) O | 1e-15 | ||
| 2hjv_A | 163 | Structure Of The Second Domain (Residues 207-368) O | 2e-15 | ||
| 3ly5_A | 262 | Ddx18 Dead-Domain Length = 262 | 2e-15 | ||
| 2g9n_A | 221 | Structure Of The Dead Domain Of Human Eukaryotic In | 2e-15 | ||
| 2g9n_A | 221 | Structure Of The Dead Domain Of Human Eukaryotic In | 7e-06 | ||
| 1t6n_A | 220 | Crystal Structure Of The N-Terminal Domain Of Human | 4e-15 | ||
| 1t6n_A | 220 | Crystal Structure Of The N-Terminal Domain Of Human | 2e-06 | ||
| 2yjt_D | 170 | Crystal Structure Of E. Coli Dead-Box Protein Srmb | 6e-15 | ||
| 2jgn_A | 185 | Ddx3 Helicase Domain Length = 185 | 1e-14 | ||
| 4db4_A | 256 | Mss116p Dead-Box Helicase Domain 2 Bound To A Chima | 3e-14 | ||
| 4db4_A | 256 | Mss116p Dead-Box Helicase Domain 2 Bound To A Chima | 7e-14 | ||
| 4db2_C | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 3e-14 | ||
| 4db2_C | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 7e-14 | ||
| 4db2_A | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 3e-14 | ||
| 4db2_A | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 7e-14 | ||
| 1qde_A | 224 | Crystal Structure Of The Atpase Domain Of Translati | 3e-14 | ||
| 1qde_A | 224 | Crystal Structure Of The Atpase Domain Of Translati | 3e-14 | ||
| 1qde_A | 224 | Crystal Structure Of The Atpase Domain Of Translati | 7e-04 | ||
| 2rb4_A | 175 | Crystal Structure Of The Helicase Domain Of Human D | 5e-14 | ||
| 2wax_A | 193 | Structure Of The Human Ddx6 C-Terminal Domain In Co | 6e-14 | ||
| 2wax_A | 193 | Structure Of The Human Ddx6 C-Terminal Domain In Co | 2e-13 | ||
| 1vec_A | 206 | Crystal Structure Of The N-Terminal Domain Of RckP5 | 3e-13 | ||
| 1qva_A | 223 | Yeast Initiation Factor 4a N-Terminal Domain Length | 8e-13 | ||
| 3dkp_A | 245 | Human Dead-Box Rna-Helicase Ddx52, Conserved Domain | 3e-12 | ||
| 1t5i_A | 172 | Crystal Structure Of The C-Terminal Domain Of Uap56 | 2e-11 | ||
| 3i32_A | 300 | Dimeric Structure Of A Hera Helicase Fragment Inclu | 2e-11 | ||
| 3i32_A | 300 | Dimeric Structure Of A Hera Helicase Fragment Inclu | 2e-11 | ||
| 3eaq_A | 212 | Novel Dimerization Motif In The Dead Box Rna Helica | 3e-11 | ||
| 3eaq_A | 212 | Novel Dimerization Motif In The Dead Box Rna Helica | 3e-11 | ||
| 2oxc_A | 230 | Human Dead-Box Rna Helicase Ddx20, Dead Domain In C | 4e-11 | ||
| 2oxc_A | 230 | Human Dead-Box Rna Helicase Ddx20, Dead Domain In C | 1e-10 | ||
| 2kbf_A | 187 | Solution Structure Of Carboxyl-Terminal Domain Of D | 1e-09 | ||
| 2kbf_A | 187 | Solution Structure Of Carboxyl-Terminal Domain Of D | 3e-09 | ||
| 3gfp_A | 189 | Structure Of The C-Terminal Domain Of The Dead-Box | 2e-09 | ||
| 3gfp_A | 189 | Structure Of The C-Terminal Domain Of The Dead-Box | 3e-09 | ||
| 3peu_A | 188 | S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To | 3e-09 | ||
| 3peu_A | 188 | S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To | 6e-09 | ||
| 3fmo_B | 300 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 1e-08 | ||
| 3fhc_B | 235 | Crystal Structure Of Human Dbp5 In Complex With Nup | 2e-08 | ||
| 1fuk_A | 165 | Crystal Structure Of The Carboxy Terminal Domain Of | 4e-08 | ||
| 1fuk_A | 165 | Crystal Structure Of The Carboxy Terminal Domain Of | 4e-08 | ||
| 2kbe_A | 226 | Solution Structure Of Amino-Terminal Domain Of Dbp5 | 5e-08 | ||
| 1oyy_A | 523 | Structure Of The Recq Catalytic Core Bound To Atp-G | 3e-06 | ||
| 1oyy_A | 523 | Structure Of The Recq Catalytic Core Bound To Atp-G | 3e-06 | ||
| 1oyw_A | 523 | Structure Of The Recq Catalytic Core Length = 523 | 5e-06 | ||
| 1oyw_A | 523 | Structure Of The Recq Catalytic Core Length = 523 | 5e-06 |
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 | Back alignment and structure |
|
| >pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 | Back alignment and structure |
|
| >pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 | Back alignment and structure |
|
| >pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 | Back alignment and structure |
|
| >pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 | Back alignment and structure |
|
| >pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 | Back alignment and structure |
|
| >pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 | Back alignment and structure |
|
| >pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 | Back alignment and structure |
|
| >pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 | Back alignment and structure |
|
| >pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 | Back alignment and structure |
|
| >pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 | Back alignment and structure |
|
| >pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 | Back alignment and structure |
|
| >pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 | Back alignment and structure |
|
| >pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 | Back alignment and structure |
|
| >pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 | Back alignment and structure |
|
| >pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 | Back alignment and structure |
|
| >pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 | Back alignment and structure |
|
| >pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 | Back alignment and structure |
|
| >pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 | Back alignment and structure |
|
| >pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 | Back alignment and structure |
|
| >pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253 | Back alignment and structure |
|
| >pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253 | Back alignment and structure |
|
| >pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 | Back alignment and structure |
|
| >pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 | Back alignment and structure |
|
| >pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 | Back alignment and structure |
|
| >pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 | Back alignment and structure |
|
| >pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 | Back alignment and structure |
|
| >pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 | Back alignment and structure |
|
| >pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 | Back alignment and structure |
|
| >pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 | Back alignment and structure |
|
| >pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp Length = 445 | Back alignment and structure |
|
| >pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An Atp-analogue And Rna Length = 424 | Back alignment and structure |
|
| >pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 | Back alignment and structure |
|
| >pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1 Length = 207 | Back alignment and structure |
|
| >pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form Length = 207 | Back alignment and structure |
|
| >pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain Length = 219 | Back alignment and structure |
|
| >pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain Length = 219 | Back alignment and structure |
|
| >pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain Length = 191 | Back alignment and structure |
|
| >pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain Length = 191 | Back alignment and structure |
|
| >pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation Initiation Factor 4a-2 Length = 237 | Back alignment and structure |
|
| >pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation Initiation Factor 4a-2 Length = 237 | Back alignment and structure |
|
| >pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228 | Back alignment and structure |
|
| >pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228 | Back alignment and structure |
|
| >pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228 | Back alignment and structure |
|
| >pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236 | Back alignment and structure |
|
| >pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 | Back alignment and structure |
|
| >pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 | Back alignment and structure |
|
| >pdb|3LY5|A Chain A, Ddx18 Dead-Domain Length = 262 | Back alignment and structure |
|
| >pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic Initiation Factor 4a, Eif4a Length = 221 | Back alignment and structure |
|
| >pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic Initiation Factor 4a, Eif4a Length = 221 | Back alignment and structure |
|
| >pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56 Length = 220 | Back alignment and structure |
|
| >pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56 Length = 220 | Back alignment and structure |
|
| >pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To Regulator Of Ribonuclease Activity A (Rraa) Length = 170 | Back alignment and structure |
|
| >pdb|2JGN|A Chain A, Ddx3 Helicase Domain Length = 185 | Back alignment and structure |
|
| >pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric Rna-Dna Duplex Length = 256 | Back alignment and structure |
|
| >pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric Rna-Dna Duplex Length = 256 | Back alignment and structure |
|
| >pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 | Back alignment and structure |
|
| >pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 | Back alignment and structure |
|
| >pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 | Back alignment and structure |
|
| >pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25 Rna Helicase Length = 175 | Back alignment and structure |
|
| >pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex With An Edc3-Fdf Peptide Length = 193 | Back alignment and structure |
|
| >pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex With An Edc3-Fdf Peptide Length = 193 | Back alignment and structure |
|
| >pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A Human Dead-Box Protein Length = 206 | Back alignment and structure |
|
| >pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain Length = 223 | Back alignment and structure |
|
| >pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245 | Back alignment and structure |
|
| >pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56 Length = 172 | Back alignment and structure |
|
| >pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including The C-Terminal Reca Domain, The Dimerization Domain, And The Rna Binding Domain Length = 300 | Back alignment and structure |
|
| >pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including The C-Terminal Reca Domain, The Dimerization Domain, And The Rna Binding Domain Length = 300 | Back alignment and structure |
|
| >pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera Form 2, Complete Dimer, Symmetric Length = 212 | Back alignment and structure |
|
| >pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera Form 2, Complete Dimer, Symmetric Length = 212 | Back alignment and structure |
|
| >pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex With Adp Length = 230 | Back alignment and structure |
|
| >pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex With Adp Length = 230 | Back alignment and structure |
|
| >pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p Length = 187 | Back alignment and structure |
|
| >pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p Length = 187 | Back alignment and structure |
|
| >pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein Dbp5 Length = 189 | Back alignment and structure |
|
| >pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein Dbp5 Length = 189 | Back alignment and structure |
|
| >pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1 H337r And Ip6 Length = 188 | Back alignment and structure |
|
| >pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1 H337r And Ip6 Length = 188 | Back alignment and structure |
|
| >pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 300 | Back alignment and structure |
|
| >pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214 Length = 235 | Back alignment and structure |
|
| >pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast Eif4a Length = 165 | Back alignment and structure |
|
| >pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast Eif4a Length = 165 | Back alignment and structure |
|
| >pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p Length = 226 | Back alignment and structure |
|
| >pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S Length = 523 | Back alignment and structure |
|
| >pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S Length = 523 | Back alignment and structure |
|
| >pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core Length = 523 | Back alignment and structure |
|
| >pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core Length = 523 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 303 bits (778), Expect = 4e-90
Identities = 109/547 (19%), Positives = 213/547 (38%), Gaps = 92/547 (16%)
Query: 709 SANTNDPDDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMA 768
+ + N + ++ +S+ + ++ ++ ED ++
Sbjct: 10 DQRNFGRNQRNNNSNRYRNSRFNSRPRTRSREDDDEVHFDKTTFSKLIHVPKEDNSKEVT 69
Query: 769 EWVKF---NIPETIIRALYQKGFKTPTKIQSMVMPSALLAR-KDIVGAAETGSGKTLAFG 824
+ + I +A+ + F T +Q + L + D++ A+TG+GKT AF
Sbjct: 70 LDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFL 129
Query: 825 IPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 884
IPI ++N + + + A+I+AP
Sbjct: 130 IPIFQHLINTKFDS-----------------------------------QYMVKAVIVAP 154
Query: 885 TRELAIQVQNHILDAGKYTP----VKVACVVGGMSTEKQLRILNKC-PHILVATPGRLWE 939
TR+LA+Q++ + +VGG + +NK P+I++ATPGRL +
Sbjct: 155 TRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLID 214
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV--TMTETSQPRQTFVFSA 997
++ ++Y V+DE DR++E G +L+ I + ++++ +T +FSA
Sbjct: 215 VLEKYSNKFFR--FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSA 272
Query: 998 TLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDL-LNIKSPKIVDLTEKIGITKTLTES 1056
TL +++L + +N K +D +K +
Sbjct: 273 TLD-----------------------DKVQKLANNIMNKKECLFLDTVDK---NEPEAHE 306
Query: 1057 KI-----LCKHDEKDSY-LYYFILQH------PGRTLVFCNSISSVKRLTQLLTMLKCSP 1104
+I + + + I + + ++F ++ L +L
Sbjct: 307 RIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKD 366
Query: 1105 LP---LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 1161
LP H + Q +R + RF+ + IL+ TDV ARG+D P + V+ VP Y
Sbjct: 367 LPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANY 426
Query: 1162 IHRSGRTARANNEGLTLVLIESDEIPL--YIKMFNSLEKKVDLPDFPIDESVLSLIKKRI 1219
IHR GRTAR+ EG +++ I DE+P ++ ++ P +E +++
Sbjct: 427 IHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVT 486
Query: 1220 DLAKSIE 1226
+ + I
Sbjct: 487 EEPEDIS 493
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 279 bits (716), Expect = 8e-82
Identities = 121/696 (17%), Positives = 233/696 (33%), Gaps = 166/696 (23%)
Query: 80 KQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVD 139
N + N + + + S + + + T + + +
Sbjct: 3 LYNDGNRDQRNFGRNQRNNNSNRYRNSRFNSRPRTRSREDDDEVHFDKTTFSKLIHVPKE 62
Query: 140 TSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLAR-KDIVGAAET 198
++ E + E + + + I +A+ + F T +Q + L + D++ A+T
Sbjct: 63 DNSKEVTLDSLLE--EGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKT 120
Query: 199 GSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 258
G+GKT AF IPI ++N + +
Sbjct: 121 GTGKTFAFLIPIFQHLINTKFDS-----------------------------------QY 145
Query: 259 KLYALILAPTRELAIQVQNHILDAGKYTP----VKVACVVGGMSTEKQLRILNKC-PHIL 313
+ A+I+APTR+LA+Q++ + +VGG + +NK P+I+
Sbjct: 146 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIV 205
Query: 314 VATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPR 373
+ATPGRL + ++ ++Y V+DE DR++E G +L+ I +
Sbjct: 206 IATPGRLIDVLEKYSNKFFR--FVDYKVLDEADRLLEIGFRDDLETISGIL-------NE 256
Query: 374 QTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 433
+ ++++ +T +FSATL
Sbjct: 257 KN-------------------SKSADNIKTLLFSATLD---------------------- 275
Query: 434 DPSIKRLQDL-LNIKSPKIVDLTEKIGITKTLTESKI-----LCKHDEKDSY-LYYFILQ 486
+++L + +N K +D +K + +I + + + I +
Sbjct: 276 -DKVQKLANNIMNKKECLFLDTVDK---NEPEAHERIDQSVVISEKFANSIFAAVEHIKK 331
Query: 487 HPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 546
+ S +
Sbjct: 332 Q-----------IKERDSNY---------------------------------------K 341
Query: 547 TLVFCNSISSVKRLTQLLTMLKCSPLP---LHASMNQRQRLKNLDRFRDQNNSILLATDV 603
++F ++ L +L LP H + Q +R + RF+ + IL+ TDV
Sbjct: 342 AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV 401
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP----LKTKF 659
ARG+D P + V+ VP YIHR GRTAR+ EG +V+ I DE+P L+
Sbjct: 402 GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461
Query: 660 NLQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQV 719
N+ + + E E E E + + + + + E + ++
Sbjct: 462 NIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSERRILPEI 521
Query: 720 NK-----TEEIQSDEPHSKKLKQKKKKKQTYTSANK 750
+ Q P S++ K ++
Sbjct: 522 ASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIGKAM 557
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 8e-14
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 1341 QLLIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTP----VKVACVVGGMSTEKQ 1396
Q LI + +Y A+I+APTR+LA+Q++ + +VGG
Sbjct: 134 QHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA 193
Query: 1397 LRILNKC-PHILVATPGAL----SLKRIDLAKSIEYL 1428
+ +NK P+I++ATPG L + ++Y
Sbjct: 194 MNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYK 230
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 295 bits (758), Expect = 3e-87
Identities = 108/505 (21%), Positives = 205/505 (40%), Gaps = 89/505 (17%)
Query: 748 ANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLAR- 806
+ +L+ V +N + + + + I +A+ + F T +Q + L +
Sbjct: 1 GSSKLIHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSED 60
Query: 807 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866
D++ A+TG+GKT AF IPI ++N +
Sbjct: 61 HDVIARAKTGTGKTFAFLIPIFQHLINTKFDS---------------------------- 92
Query: 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP----VKVACVVGGMSTEKQLRI 922
+ + A+I+APTR+LA+Q++ + +VGG +
Sbjct: 93 -------QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNK 145
Query: 923 LNKC-PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 981
+NK P+I++ATPGRL + ++ ++Y V+DE DR++E G +L+ I +
Sbjct: 146 MNKLRPNIVIATPGRLIDVLEKYSNKFFR--FVDYKVLDEADRLLEIGFRDDLETISGIL 203
Query: 982 --TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL-QDLLNIKSP 1038
++++ +T +FSATL +++L +++N K
Sbjct: 204 NEKNSKSADNIKTLLFSATLD-----------------------DKVQKLANNIMNKKEC 240
Query: 1039 KIVDLTEKIGITKTLTESKI-----LCKHDEKDSY-LYYFILQH------PGRTLVFCNS 1086
+D +K + +I + + + I + + ++F +
Sbjct: 241 LFLDTVDK---NEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPT 297
Query: 1087 ISSVKRLTQLLTMLKCSPLP---LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 1143
+ L +L LP H + Q +R + RF+ + IL+ TDV ARG+D
Sbjct: 298 VKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDF 357
Query: 1144 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL--YIKMFNSLEKKVD 1201
P + V+ VP YIHR GRTAR+ EG +++ I DE+P ++ ++
Sbjct: 358 PNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQ 417
Query: 1202 LPDFPIDESVLSLIKKRIDLAKSIE 1226
P +E +++ + + I
Sbjct: 418 EKYEPSEEIKSEVLEAVTEEPEDIS 442
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 272 bits (696), Expect = 5e-79
Identities = 115/634 (18%), Positives = 222/634 (35%), Gaps = 163/634 (25%)
Query: 131 ANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLAR- 189
+ +L+ V +N + + + + I +A+ + F T +Q + L +
Sbjct: 1 GSSKLIHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSED 60
Query: 190 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249
D++ A+TG+GKT AF IPI ++N +
Sbjct: 61 HDVIARAKTGTGKTFAFLIPIFQHLINTKFDS---------------------------- 92
Query: 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP----VKVACVVGGMSTEKQLRI 305
+ + A+I+APTR+LA+Q++ + +VGG +
Sbjct: 93 -------QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNK 145
Query: 306 LNKC-PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 364
+NK P+I++ATPGRL + ++ ++Y V+DE DR++E G +L+ I +
Sbjct: 146 MNKLRPNIVIATPGRLIDVLEKYSNKFFR--FVDYKVLDEADRLLEIGFRDDLETISGIL 203
Query: 365 TMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQ 424
E + +++ +T +FSATL
Sbjct: 204 ------------------NEKNS--------KSADNIKTLLFSATLD------------- 224
Query: 425 SKSKKVSKGDPSIKRL-QDLLNIKSPKIVDLTEKIGITKTLTESKI-----LCKHDEKDS 478
+++L +++N K +D +K + +I + +
Sbjct: 225 ----------DKVQKLANNIMNKKECLFLDTVDK---NEPEAHERIDQSVVISEKFANSI 271
Query: 479 Y-LYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 537
+ I + + S
Sbjct: 272 FAAVEHIKKQ-----------IKERDSNY------------------------------- 289
Query: 538 YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLP---LHASMNQRQRLKNLDRFRDQN 594
+ ++F ++ L +L LP H + Q +R + RF+
Sbjct: 290 --------KAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE 341
Query: 595 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654
+ IL+ TDV ARG+D P + V+ VP YIHR GRTAR+ EG +V+ I DE+P
Sbjct: 342 SGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELP 401
Query: 655 L------KTKFNLQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSEL 708
+ ++E E E +++ + + + + + + E
Sbjct: 402 FVRELEDAKNIVIAKQEKYEPSEEIKSEVLEA--VTEEPEDISDIVISLISSYRSCIKEY 459
Query: 709 SANTNDPDDQVNKTEEIQSDEPHSKKLKQKKKKK 742
+ ++ T + ++P K ++
Sbjct: 460 RFSERRILPEIASTYGVLLNDPQLKIPVSRRFLD 493
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 8e-14
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 1341 QLLIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTP----VKVACVVGGMSTEKQ 1396
Q LI + +Y A+I+APTR+LA+Q++ + +VGG
Sbjct: 83 QHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA 142
Query: 1397 LRILNKC-PHILVATPGAL----SLKRIDLAKSIEYL 1428
+ +NK P+I++ATPG L + ++Y
Sbjct: 143 MNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYK 179
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 280 bits (719), Expect = 1e-84
Identities = 117/426 (27%), Positives = 188/426 (44%), Gaps = 81/426 (19%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
N+ + I+ A+ KGF+ PT IQ V+P L +IV A TGSGKT +F IP++ +
Sbjct: 11 LNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELV- 69
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+EN N + A+IL PTRELAIQV
Sbjct: 70 ---------NEN------------------------------NGIEAIILTPTRELAIQV 90
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ I +K+A + GG + Q++ L K +I+V TPGR+ + I G +L
Sbjct: 91 ADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHINRGTLNLK--- 146
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+ Y ++DE D M+ G +++ IL+ ++ ++ +FSAT+
Sbjct: 147 NVKYFILDEADEMLNMGFIKDVEKILN-----ACNKDKRILLFSATMP------------ 189
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYF 1072
I L + + K I + +S + +E+ L
Sbjct: 190 -----------REILNLAKKY-MGDYSFI----KAKINANIEQSYVEVNENERFEALCRL 233
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
+ LVFC + K L +L + +H ++Q QR K + F+ + IL+
Sbjct: 234 LKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILI 293
Query: 1133 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192
ATDV +RG+D+ + VI+YH+P+ E Y+HR GRT RA +G + +I E K
Sbjct: 294 ATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRRE----YKK 349
Query: 1193 FNSLEK 1198
+E+
Sbjct: 350 LRYIER 355
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 3e-42
Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 49/221 (22%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
N+ + I+ A+ KGF+ PT IQ V+P L +IV A TGSGKT +F IP++ +
Sbjct: 11 LNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELV- 69
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+EN N + A+IL PTRELAIQV
Sbjct: 70 ---------NEN------------------------------NGIEAIILTPTRELAIQV 90
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ I +K+A + GG + Q++ L K +I+V TPGR+ + I G +L
Sbjct: 91 ADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHINRGTLNLK--- 146
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
+ Y ++DE D M+ G +++ IL+ ++ ++ +
Sbjct: 147 NVKYFILDEADEMLNMGFIKDVEKILN-----ACNKDKRIL 182
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 4e-33
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 12/183 (6%)
Query: 491 TLCEEIQDLLN--IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 548
T+ EI +L + + K I + +S + +E+ L + L
Sbjct: 187 TMPREILNLAKKYMGDYSFI----KAKINANIEQSYVEVNENERFEALCRLLKNKEFYGL 242
Query: 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 608
VFC + K L +L + +H ++Q QR K + F+ + IL+ATDV +RG+
Sbjct: 243 VFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGI 302
Query: 609 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL------KTKFNLQ 662
D+ + VI+YH+P+ E Y+HR GRT RA +G + +I E K ++
Sbjct: 303 DVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIK 362
Query: 663 EEE 665
+ +
Sbjct: 363 KLK 365
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 9e-15
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
A+IL PTRELAIQV + I +K+A + GG + Q++ L K +I+V TPG
Sbjct: 77 AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KNANIVVGTPG 132
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 278 bits (713), Expect = 4e-83
Identities = 121/420 (28%), Positives = 181/420 (43%), Gaps = 72/420 (17%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+ + E I+ + + PT +Q +P R D++ A+TGSGKT AF +PIL
Sbjct: 16 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKR-DLMACAQTGSGKTAAFLLPIL 74
Query: 829 TGIVN--KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
+ I + E EN + +L+LAPTR
Sbjct: 75 SQIYSDGPGEALRAMKENGRYGRRKQYP-----------------------ISLVLAPTR 111
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELA+Q+ + V+ V GG +Q+R L + H+LVATPGRL + ++ G
Sbjct: 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK- 170
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT-------L 999
L YLV+DE DRM++ G P+++ I+++ TM R T +FSAT L
Sbjct: 171 --IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGV-RHTMMFSATFPKEIQML 227
Query: 1000 THS-LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 1058
L + L G +V +I Q + +
Sbjct: 228 ARDFLDEYIFLAVG-----RVGSTSENIT--QKV-------------------------V 255
Query: 1059 LCKHDEKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 1116
+ +K S+L + TLVF + L L + +H +QR R
Sbjct: 256 WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDR 315
Query: 1117 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
+ L +FR + IL+AT VAARGLDI ++HVI++ +P E Y+HR GRT R N GL
Sbjct: 316 EEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL 375
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 6e-48
Identities = 71/235 (30%), Positives = 109/235 (46%), Gaps = 30/235 (12%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ + E I+ + + PT +Q +P R D++ A+TGSGKT AF +PIL
Sbjct: 16 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKR-DLMACAQTGSGKTAAFLLPIL 74
Query: 212 TGIVN--KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
+ I + E EN + +L+LAPTR
Sbjct: 75 SQIYSDGPGEALRAMKENGRYGRRKQYP-----------------------ISLVLAPTR 111
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELA+Q+ + V+ V GG +Q+R L + H+LVATPGRL + ++ G
Sbjct: 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK- 170
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
L YLV+DE DRM++ G P+++ I+++ TM R TM+ S FP+
Sbjct: 171 --IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGV-RHTMMFSATFPK 222
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 3e-29
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 525 ILCKHDEKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 582
+ + +K S+L + TLVF + L L + +H +QR
Sbjct: 255 VWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 314
Query: 583 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
R + L +FR + IL+AT VAARGLDI ++HVI++ +P E Y+HR GRT R N G
Sbjct: 315 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 374
Query: 643 L 643
L
Sbjct: 375 L 375
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 1e-14
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
+L+LAPTRELA+Q+ + V+ V GG +Q+R L + H+LVATPG L
Sbjct: 104 SLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLV 163
Query: 1415 ---SLKRIDLAKSIEYL 1428
+I L +YL
Sbjct: 164 DMMERGKIGL-DFCKYL 179
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 275 bits (705), Expect = 9e-82
Identities = 110/416 (26%), Positives = 177/416 (42%), Gaps = 81/416 (19%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+ ++ + II + + G+K PT IQ +P + + +D++ A+TGSGKT AF +PIL
Sbjct: 57 HFTSADLRDIIIDNVNKSGYKIPTPIQKCSIP-VISSGRDLMACAQTGSGKTAAFLLPIL 115
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
+ + + E E +I++PTREL
Sbjct: 116 SKL------------LEDPHELELGRP----------------------QVVIVSPTREL 141
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
AIQ+ N + +K+ V GG S Q + + H+++ATPGRL +F+
Sbjct: 142 AIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF--- 198
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT-------LTH 1001
++V+DE DRM++ G +++ I+ VTM QT +FSAT +
Sbjct: 199 ITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRP---EHQTLMFSATFPEEIQRMAG 255
Query: 1002 S-LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 1060
LKN + + G IV + ++
Sbjct: 256 EFLKNYVFVAIG---------------------------IVGGA-----CSDVKQTIYEV 283
Query: 1061 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 1120
K S L + + T+VF + L L+ + +H Q QR + L
Sbjct: 284 NKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQAL 343
Query: 1121 DRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
F++ + +L+AT VA+RGLDI I+HVI+Y +P + Y+HR GRT R N G
Sbjct: 344 RDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGR 399
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 8e-45
Identities = 65/233 (27%), Positives = 108/233 (46%), Gaps = 41/233 (17%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ ++ + II + + G+K PT IQ +P + + +D++ A+TGSGKT AF +PIL
Sbjct: 57 HFTSADLRDIIIDNVNKSGYKIPTPIQKCSIP-VISSGRDLMACAQTGSGKTAAFLLPIL 115
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
+ + + E E +I++PTREL
Sbjct: 116 SKL------------LEDPHELELGRP----------------------QVVIVSPTREL 141
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
AIQ+ N + +K+ V GG S Q + + H+++ATPGRL +F+
Sbjct: 142 AIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF--- 198
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
++V+DE DRM++ G +++ I+ VTM QT++ S FPE
Sbjct: 199 ITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRP---EHQTLMFSATFPE 248
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 1e-30
Identities = 39/128 (30%), Positives = 61/128 (47%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
K S L + + T+VF + L L+ + +H Q QR
Sbjct: 281 YEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQRE 340
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
+ L F++ + +L+AT VA+RGLDI I+HVI+Y +P + Y+HR GRT R N G
Sbjct: 341 QALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRA 400
Query: 645 VVLIESDE 652
+ ++
Sbjct: 401 TSFFDPEK 408
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 3e-14
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
+I++PTRELAIQ+ N + +K+ V GG S Q + + H+++ATPG L
Sbjct: 132 VVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRL- 190
Query: 1416 LKRIDL 1421
+D
Sbjct: 191 ---LDF 193
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 269 bits (690), Expect = 6e-81
Identities = 119/414 (28%), Positives = 183/414 (44%), Gaps = 88/414 (21%)
Query: 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 834
+ E I +A+ + GFK T++QS +P +L K++V A+TGSGKT A+ IPIL
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIP-LMLQGKNVVVRAKTGSGKTAAYAIPILE----- 54
Query: 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 894
+ +L++ PTREL QV +
Sbjct: 55 ------------------------------------LGMK----SLVVTPTRELTRQVAS 74
Query: 895 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 954
HI D G+Y KVA V GGM + Q+ + + I+VATPGRL + G L+
Sbjct: 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRV-RNADIVVATPGRLLDLWSKGVIDLSS---F 130
Query: 955 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014
++IDE D M E G ++K IL +TS + T +FSAT+
Sbjct: 131 EIVIIDEADLMFEMGFIDDIKIILA-----QTSNRKITGLFSATIP-------------- 171
Query: 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074
I+++ I + + + + I E K + D+ S +
Sbjct: 172 ---------EEIRKVVKDF-ITNYEEI----EACIGLANVEHKFVHVKDDWRSKVQALRE 217
Query: 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 1134
+VF + + V +L +L + + L + Q R +N+D FR+ +L+ T
Sbjct: 218 NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITT 273
Query: 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188
DVA+RGLDIP +E VI++ P+ YIHR GRT R +G + I +E L
Sbjct: 274 DVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFI-LNEYWL 326
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 1e-68
Identities = 118/498 (23%), Positives = 183/498 (36%), Gaps = 172/498 (34%)
Query: 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 217
+ E I +A+ + GFK T++QS +P +L K++V A+TGSGKT A+ IPIL
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIP-LMLQGKNVVVRAKTGSGKTAAYAIPILE----- 54
Query: 218 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQN 277
+ +L++ PTREL QV +
Sbjct: 55 ------------------------------------LGMK----SLVVTPTRELTRQVAS 74
Query: 278 HILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKI 337
HI D G+Y KVA V GGM + Q+ + + I+VATPGRL + G L+
Sbjct: 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRV-RNADIVVATPGRLLDLWSKGVIDLSS---F 130
Query: 338 NYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397
++IDE D M E G ++K IL + +
Sbjct: 131 EIVIIDEADLMFEMGFIDDIKIILAQT-------SNR----------------------- 160
Query: 398 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK 457
+ T +FSAT+ I+++ I + + + +
Sbjct: 161 ---KITGLFSATIP-----------------------EEIRKVVKDF-ITNYEEI----E 189
Query: 458 IGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGIT 517
I E + ++ R+ + L K V I
Sbjct: 190 ACIGLANVEH-------------KFVHVKDDWRSKVQ----ALRENKDKGV-----IVFV 227
Query: 518 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
+T ++ V +L +L L
Sbjct: 228 RT--------RNR--------------------------VAKLVRLFD--NAIEL--RGD 249
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
+ Q R +N+D FR+ +L+ TDVA+RGLDIP +E VI++ P+ YIHR GRT R
Sbjct: 250 LPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGR 309
Query: 638 ANNEGLTVVLIESDEIPL 655
+G + I +E L
Sbjct: 310 MGRKGEAITFI-LNEYWL 326
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 3e-16
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
+L++ PTREL QV +HI D G+Y KVA V GGM + Q+ + + I+VATPG
Sbjct: 59 SLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV-RNADIVVATPG 114
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 267 bits (684), Expect = 2e-79
Identities = 115/448 (25%), Positives = 186/448 (41%), Gaps = 92/448 (20%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F + ++ +++ GF+ P+ IQ +P A+ R DI+ A+ G+GKT AF IP L
Sbjct: 26 FYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGR-DILARAKNGTGKTAAFVIPTL---- 80
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
E VK NK+ ALI+ PTRELA+Q
Sbjct: 81 -----------------------------------EKVKPKLNKIQALIMVPTRELALQT 105
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ GK+ + GG + + LN+ HILV TPGR+ + L+
Sbjct: 106 SQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLS--- 162
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012
+ ++DE D+M+ ++ IL Q+ +FSAT ++
Sbjct: 163 DCSLFIMDEADKMLSRDFKTIIEQILS-----FLPPTHQSLLFSATFPLTV--------- 208
Query: 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI-----LCKHDEKDS 1067
K+ K L P +I + + LT I + +K
Sbjct: 209 ----KEFMV-----KHLHK------P------YEINLMEELTLKGITQYYAFVEERQKLH 247
Query: 1068 YLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126
L + ++FCNS + V+ L + +T L S HA M Q++R K FR
Sbjct: 248 CLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG 307
Query: 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
L+ +D+ RG+DI + VI++ P+T+E Y+HR GR+ R + GL + LI ++
Sbjct: 308 KVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWND- 366
Query: 1187 PLYIKMFNSLEK--KVDLPDFP--IDES 1210
+E+ ++ P ID+S
Sbjct: 367 ---RFNLYKIEQELGTEIAAIPATIDKS 391
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 158 bits (403), Expect = 5e-42
Identities = 61/229 (26%), Positives = 96/229 (41%), Gaps = 48/229 (20%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F + ++ +++ GF+ P+ IQ +P A+ R DI+ A+ G+GKT AF IP L
Sbjct: 26 FYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGR-DILARAKNGTGKTAAFVIPTL---- 80
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
E VK NK+ ALI+ PTRELA+Q
Sbjct: 81 -----------------------------------EKVKPKLNKIQALIMVPTRELALQT 105
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ GK+ + GG + + LN+ HILV TPGR+ + L+
Sbjct: 106 SQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLS--- 162
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
+ ++DE D+M+ ++ IL Q+++ S FP
Sbjct: 163 DCSLFIMDEADKMLSRDFKTIIEQILS-----FLPPTHQSLLFSATFPL 206
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 3e-29
Identities = 47/196 (23%), Positives = 84/196 (42%), Gaps = 19/196 (9%)
Query: 504 SPKIVDLTEK-------IGITKTLTESKI-----LCKHDEKDSYLYYFI-LQHPGRTLVF 550
+ + K I + + LT I + +K L + ++F
Sbjct: 205 PLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIF 264
Query: 551 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDI 610
CNS + V+ L + +T L S HA M Q++R K FR L+ +D+ RG+DI
Sbjct: 265 CNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDI 324
Query: 611 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL------KTKFNLQEE 664
+ VI++ P+T+E Y+HR GR+ R + GL + LI ++ + +
Sbjct: 325 QAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAI 384
Query: 665 ENNEEEERAEADKEKT 680
++ A+ ++T
Sbjct: 385 PATIDKSLYVAENDET 400
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 6e-18
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALI+ PTRELA+Q + GK+ + GG + + LN+ HILV TPG
Sbjct: 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPG 148
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 9e-77
Identities = 106/453 (23%), Positives = 194/453 (42%), Gaps = 87/453 (19%)
Query: 741 KKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMP 800
+K+ + +E +TS D+ + + E ++R +Y GF+ P+ IQ +
Sbjct: 13 RKRLLKEEDMTKVEFETSEEVDV---TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIK 69
Query: 801 SALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELE 860
++ +D++ +++G+GKT F I +L
Sbjct: 70 -QIIKGRDVIAQSQSGTGKTATFSISVL-------------------------------- 96
Query: 861 EESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL 920
+ + + ALILAPTRELA+Q+Q +L G Y V+ +GG + + +
Sbjct: 97 -------QCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDI 149
Query: 921 RILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDR 980
R L+ H++ TPGR+++ I+ I LV+DE D M+ G ++ ++
Sbjct: 150 RKLDYGQHVVAGTPGRVFDMIRRRSLRTRA---IKMLVLDEADEMLNKGFKEQIYDVYR- 205
Query: 981 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 1040
Q + SATL H + +++ K + D P
Sbjct: 206 ----YLPPATQVVLISATLPHEI-------------LEMTN-----KFMTD------PIR 237
Query: 1041 VDLTEKIGITKTLTESKI------LCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRL 1093
+ + LT I + + + K L + ++FCN+ V L
Sbjct: 238 ILVK-----RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWL 292
Query: 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153
T+ + + +H M Q++R + FR + +L++TDV ARGLD+P + +I+Y
Sbjct: 293 TEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYD 352
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+P E+YIHR GR+ R +G+ + +++D+I
Sbjct: 353 LPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 385
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 9e-42
Identities = 59/261 (22%), Positives = 109/261 (41%), Gaps = 51/261 (19%)
Query: 124 KKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMP 183
+K+ + +E +TS D+ + + E ++R +Y GF+ P+ IQ +
Sbjct: 13 RKRLLKEEDMTKVEFETSEEVDV---TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIK 69
Query: 184 SALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELE 243
++ +D++ +++G+GKT F I +L
Sbjct: 70 -QIIKGRDVIAQSQSGTGKTATFSISVL-------------------------------- 96
Query: 244 EESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL 303
+ + + ALILAPTRELA+Q+Q +L G Y V+ +GG + + +
Sbjct: 97 -------QCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDI 149
Query: 304 RILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDR 363
R L+ H++ TPGR+++ I+ I LV+DE D M+ G ++ ++
Sbjct: 150 RKLDYGQHVVAGTPGRVFDMIRRRSLRTRA---IKMLVLDEADEMLNKGFKEQIYDVYR- 205
Query: 364 VTMTETSQPRQTMIESGHFPE 384
Q ++ S P
Sbjct: 206 ----YLPPATQVVLISATLPH 222
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 3e-27
Identities = 36/110 (32%), Positives = 65/110 (59%)
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+ ++FCN+ V LT+ + + +H M Q++R + FR + +L++TDV
Sbjct: 276 ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV 335
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
ARGLD+P + +I+Y +P E+YIHR GR+ R +G+ + +++D+I
Sbjct: 336 WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 385
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 1e-16
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
ALILAPTRELA+Q+Q +L G Y V+ +GG + + +R L+ H++ TPG
Sbjct: 108 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPG 164
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 255 bits (653), Expect = 2e-75
Identities = 113/455 (24%), Positives = 200/455 (43%), Gaps = 86/455 (18%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F + ++RA+ GF+ P+++Q +P A+L D++ A++G GKT F + L
Sbjct: 13 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGM-DVLCQAKSGMGKTAVFVLATL---- 67
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ ++ ++ L++ TRELA Q+
Sbjct: 68 -----------------------------------QQLEPVTGQVSVLVMCHTRELAFQI 92
Query: 893 QNHILDAGKYTP-VKVACVVGGMSTEKQLRIL-NKCPHILVATPGRLWEFIQLGHFHLTE 950
KY P VKVA GG+S +K +L CPHI+V TPGR+ + +L
Sbjct: 93 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLK- 151
Query: 951 LYKINYLVIDETDRMIESGHFPE-LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
I + ++DE D+M+E ++ I T +Q +FSATL+ ++
Sbjct: 152 --HIKHFILDECDKMLEQLDMRRDVQEIF-----RMTPHEKQVMMFSATLSKEIR----- 199
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT-KTLTESKILCKHDEKDSY 1068
V + K +QD P + + ++ +T L + + K +EK+
Sbjct: 200 --------PVCR-----KFMQD------PMEIFVDDETKLTLHGLQQYYVKLKDNEKNRK 240
Query: 1069 LYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127
L+ + + + ++F S+ L QLL + +H M Q +RL +F+D
Sbjct: 241 LFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 300
Query: 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL--TLVLIESDE 1185
IL+AT++ RG+DI + +Y +P S+ Y+HR R R +GL T V E+D
Sbjct: 301 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND- 359
Query: 1186 IPLYIKMFNSLEK--KVDLPDFPIDESVLSLIKKR 1218
K+ N ++ +V++ + P + + S I++
Sbjct: 360 ----AKILNDVQDRFEVNISELPDEIDISSYIEQT 390
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 223 bits (570), Expect = 3e-64
Identities = 107/500 (21%), Positives = 185/500 (37%), Gaps = 157/500 (31%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F + ++RA+ GF+ P+++Q +P A+L D++ A++G GKT F + L
Sbjct: 13 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGM-DVLCQAKSGMGKTAVFVLATL---- 67
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+ ++ ++ L++ TRELA Q+
Sbjct: 68 -----------------------------------QQLEPVTGQVSVLVMCHTRELAFQI 92
Query: 276 QNHILDAGKYTP-VKVACVVGGMSTEKQLRIL-NKCPHILVATPGRLWEFIQLGHFHLTE 333
KY P VKVA GG+S +K +L CPHI+V TPGR+ + +L
Sbjct: 93 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLK- 151
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393
I + ++DE D+M L+++ M ++ I
Sbjct: 152 --HIKHFILDECDKM------------LEQLDMRR-------DVQE--------IF---- 178
Query: 394 MTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVD 453
T +Q +FSATL+ + + V + K +QD P +
Sbjct: 179 -RMTPHEKQVMMFSATLSKEI-------------RPVCR-----KFMQD------PMEIF 213
Query: 454 LTEKIGIT-KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTE 512
+ ++ +T L + + K +EK+ R L DL +
Sbjct: 214 VDDETKLTLHGLQQYYVKLKDNEKN------------RKLF---------------DLLD 246
Query: 513 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
+ + + I S+ L QLL +
Sbjct: 247 VLEFNQVV----IFV------------------------KSVQRCIALAQLLVEQNFPAI 278
Query: 573 PLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632
+H M Q +RL +F+D IL+AT++ RG+DI + +Y +P S+ Y+HR
Sbjct: 279 AIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRV 338
Query: 633 GRTARANNEGLTVVLIESDE 652
R R +GL + + +
Sbjct: 339 ARAGRFGTKGLAITFVSDEN 358
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 1e-15
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRIL-NKCPHILVATPG 1412
L++ TRELA Q+ KY P VKVA GG+S +K +L CPHI+V TPG
Sbjct: 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPG 137
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 253 bits (649), Expect = 8e-75
Identities = 98/446 (21%), Positives = 190/446 (42%), Gaps = 86/446 (19%)
Query: 749 NKELLEVDTSNNEDMFVQMAE-WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARK 807
++ + +++ S + + ++ + + E ++R ++ GF+ P+ IQ + ++
Sbjct: 1 SEGITDIEESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIM-PIIEGH 59
Query: 808 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 867
D++ A++G+GKT F I L
Sbjct: 60 DVLAQAQSGTGKTGTFSIAAL--------------------------------------- 80
Query: 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927
+ + + AL+LAPTRELA+Q+Q ++ + +KV +GG S + L
Sbjct: 81 QRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-A 139
Query: 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 987
I+V TPGR+++ IQ F KI ++DE D M+ SG ++ I
Sbjct: 140 QIVVGTPGRVFDNIQRRRFRTD---KIKMFILDEADEMLSSGFKEQIYQIFT-----LLP 191
Query: 988 QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI 1047
Q + SAT+ + + +V+ K +++ P + +
Sbjct: 192 PTTQVVLLSATMPNDVL-------------EVTT-----KFMRN------PVRILVK--- 224
Query: 1048 GITKTLTESKI------LCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTML 1100
LT I + + + K L + ++FCN+ V+ LT L
Sbjct: 225 --KDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND 282
Query: 1101 KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 1160
K + +++ + Q++R + FR ++ IL++TD+ ARG+D+ + VI+Y +P E
Sbjct: 283 KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKEN 342
Query: 1161 YIHRSGRTARANNEGLTLVLIESDEI 1186
YIHR GR R +G+ + + ++++
Sbjct: 343 YIHRIGRGGRFGRKGVAINFVTNEDV 368
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 1e-39
Identities = 57/286 (19%), Positives = 108/286 (37%), Gaps = 78/286 (27%)
Query: 132 NKELLEVDTSNNEDMFVQMAE-WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARK 190
++ + +++ S + + ++ + + E ++R ++ GF+ P+ IQ + ++
Sbjct: 1 SEGITDIEESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIM-PIIEGH 59
Query: 191 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250
D++ A++G+GKT F I L
Sbjct: 60 DVLAQAQSGTGKTGTFSIAAL--------------------------------------- 80
Query: 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310
+ + + AL+LAPTRELA+Q+Q ++ + +KV +GG S + L
Sbjct: 81 QRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-A 139
Query: 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETS 370
I+V TPGR+++ IQ F KI ++DE D M+ SG ++ I
Sbjct: 140 QIVVGTPGRVFDNIQRRRFRTD---KIKMFILDEADEMLSSGFKEQIYQIFT-------- 188
Query: 371 QPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 416
Q + SAT+ + +
Sbjct: 189 -------------------------LLPPTTQVVLLSATMPNDVLE 209
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-27
Identities = 33/113 (29%), Positives = 64/113 (56%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+ ++FCN+ V+ LT L K + +++ + Q++R + FR ++ IL++
Sbjct: 256 SISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIS 315
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
TD+ ARG+D+ + VI+Y +P E YIHR GR R +G+ + + ++++
Sbjct: 316 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDV 368
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 8e-16
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
AL+LAPTRELA+Q+Q ++ + +KV +GG S + L I+V TPG
Sbjct: 92 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPG 147
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 254 bits (651), Expect = 8e-75
Identities = 101/466 (21%), Positives = 192/466 (41%), Gaps = 89/466 (19%)
Query: 729 EPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGF 788
P Q + + + ++++ NE + + N+ E+++R +Y GF
Sbjct: 5 SPEFMSASQDSRSRDNGPDGMEPEGVIESNWNE----IVDSFDDMNLSESLLRGIYAYGF 60
Query: 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848
+ P+ IQ + + D++ A++G+GKT F I IL
Sbjct: 61 EKPSAIQQRAIL-PCIKGYDVIAQAQSGTGKTATFAISIL-------------------- 99
Query: 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVA 908
+ ++ AL+LAPTRELA Q+Q ++ G Y
Sbjct: 100 -------------------QQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 140
Query: 909 CVVGGMSTEKQLRIL-NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE 967
+GG + +++ L + PHI+V TPGR+++ + + I V+DE D M+
Sbjct: 141 ACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPK---YIKMFVLDEADEMLS 197
Query: 968 SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 1027
G ++ +I + + Q + SAT+ + +V+K K
Sbjct: 198 RGFKDQIYDIFQ-----KLNSNTQVVLLSATMPSDVL-------------EVTK-----K 234
Query: 1028 RLQDLLNIKSPKIVDLTEKIGITKTLTESKI------LCKHDEKDSYLYYFI-LQHPGRT 1080
++D P + + + LT I + + + K L +
Sbjct: 235 FMRD------PIRILVK-----KEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQA 283
Query: 1081 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140
++F N+ V LT+ + + +H M+Q++R + FR ++ +L+ TD+ ARG
Sbjct: 284 VIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARG 343
Query: 1141 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
+D+ + VI+Y +P E YIHR GR R +G+ + ++ ++
Sbjct: 344 IDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDK 389
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 9e-40
Identities = 60/306 (19%), Positives = 112/306 (36%), Gaps = 81/306 (26%)
Query: 112 EPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGF 171
P Q + + + ++++ NE + + N+ E+++R +Y GF
Sbjct: 5 SPEFMSASQDSRSRDNGPDGMEPEGVIESNWNE----IVDSFDDMNLSESLLRGIYAYGF 60
Query: 172 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231
+ P+ IQ + + D++ A++G+GKT F I IL
Sbjct: 61 EKPSAIQQRAIL-PCIKGYDVIAQAQSGTGKTATFAISIL-------------------- 99
Query: 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVA 291
+ ++ AL+LAPTRELA Q+Q ++ G Y
Sbjct: 100 -------------------QQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 140
Query: 292 CVVGGMSTEKQLRIL-NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE 350
+GG + +++ L + PHI+V TPGR+++ + + I V+DE D M+
Sbjct: 141 ACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPK---YIKMFVLDEADEMLS 197
Query: 351 SGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410
G ++ +I + + Q + SAT+
Sbjct: 198 RGFKDQIYDIFQ---------------------------------KLNSNTQVVLLSATM 224
Query: 411 THSLKN 416
+
Sbjct: 225 PSDVLE 230
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-27
Identities = 31/110 (28%), Positives = 60/110 (54%)
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+ ++F N+ V LT+ + + +H M+Q++R + FR ++ +L+ TD+
Sbjct: 280 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 339
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
ARG+D+ + VI+Y +P E YIHR GR R +G+ + ++ ++
Sbjct: 340 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDK 389
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 1e-15
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL-NKCPHILVATPG 1412
AL+LAPTRELA Q+Q ++ G Y +GG + +++ L + PHI+V TPG
Sbjct: 111 ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPG 168
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 8e-68
Identities = 94/468 (20%), Positives = 180/468 (38%), Gaps = 105/468 (22%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGI 831
+ +++ +Y F+ P+KIQ +P L ++++ +++G+GKT AF + +LT +
Sbjct: 10 LGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRV 69
Query: 832 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 891
+ +P A+ LAP+RELA Q
Sbjct: 70 NPEDASPQ---------------------------------------AICLAPSRELARQ 90
Query: 892 VQNHILDAGKYTPVK-VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 950
+ + GK+T + V KQ+ ++V TPG + + ++ L
Sbjct: 91 TLEVVQEMGKFTKITSQLIVPDSFEKNKQIN-----AQVIVGTPGTVLDLMRRKLMQLQ- 144
Query: 951 LYKINYLVIDETDRMIESGHFPE-LKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 1009
KI V+DE D M++ + + + Q +FSAT
Sbjct: 145 --KIKIFVLDEADNMLDQQGLGDQCIRVKR-----FLPKDTQLVLFSATF---------- 187
Query: 1010 KKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI-----LCKHDE 1064
++++ + + + ++L T + I CK +E
Sbjct: 188 -------------ADAVRQYAKKI-VPNANTLELQ-----TNEVNVDAIKQLYMDCK-NE 227
Query: 1065 KDSY-----LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 1119
D + LY L G +++F + + L L LH + ++R +
Sbjct: 228 ADKFDVLTELYG--LMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRL 285
Query: 1120 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS------EIYIHRSGRTARANN 1173
+D FR+ + +L+ T+V ARG+DIP + V++Y +P + YIHR GRT R
Sbjct: 286 IDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGR 345
Query: 1174 EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVL--SLIKKRI 1219
+G+ + + + +++ P D+ ++KK +
Sbjct: 346 KGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVEKIVKKVL 393
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 1e-35
Identities = 47/232 (20%), Positives = 90/232 (38%), Gaps = 55/232 (23%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGI 214
+ +++ +Y F+ P+KIQ +P L ++++ +++G+GKT AF + +LT +
Sbjct: 10 LGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRV 69
Query: 215 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 274
+ +P A+ LAP+RELA Q
Sbjct: 70 NPEDASPQ---------------------------------------AICLAPSRELARQ 90
Query: 275 VQNHILDAGKYTPVK-VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 333
+ + GK+T + V KQ+ ++V TPG + + ++ L
Sbjct: 91 TLEVVQEMGKFTKITSQLIVPDSFEKNKQIN-----AQVIVGTPGTVLDLMRRKLMQLQ- 144
Query: 334 LYKINYLVIDETDRMIESGHFPE-LKNILDRVTMTETSQPRQTMIESGHFPE 384
KI V+DE D M++ + + + Q ++ S F +
Sbjct: 145 --KIKIFVLDEADNMLDQQGLGDQCIRVKR-----FLPKDTQLVLFSATFAD 189
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 6e-24
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
L G +++F + + L L LH + ++R + +D FR+ + +L+
Sbjct: 240 LMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLIT 299
Query: 601 TDVAARGLDIPGIEHVIHYHVPRTS------EIYIHRSGRTARANNEGLTVVLIESDE 652
T+V ARG+DIP + V++Y +P + YIHR GRT R +G+ + +
Sbjct: 300 TNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 4e-12
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVK-VACVVGGMSTEKQLRILNKCPHILVATPG 1412
A+ LAP+RELA Q + + GK+T + V KQ+ ++V TPG
Sbjct: 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQIN-----AQVIVGTPG 130
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 232 bits (595), Expect = 1e-66
Identities = 109/527 (20%), Positives = 205/527 (38%), Gaps = 105/527 (19%)
Query: 676 DKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKL 735
++ E ++S+ K ++ + + V + +AN D EE + D L
Sbjct: 9 AVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTD------EEEKEDRAAQSLL 62
Query: 736 KQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQ 795
+ + + E+L+ D ++ + + + + +++ +Y GF P+KIQ
Sbjct: 63 NKLIRSNLVDNTNQVEVLQRDPNSPLYS---VKSFEELRLKPQLLQGVYAMGFNRPSKIQ 119
Query: 796 SMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 854
+P L ++++ +++G+GKT AF + +L+ + + P
Sbjct: 120 ENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ--------------- 164
Query: 855 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGG 913
L L+PT ELA+Q I GK+ P +K+A V G
Sbjct: 165 ------------------------CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG 200
Query: 914 MSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIES-GHF 971
E+ +I I++ TPG + ++ L KI V+DE D MI + GH
Sbjct: 201 NKLERGQKIS---EQIVIGTPGTVLDWCSKLKFIDPK---KIKVFVLDEADVMIATQGHQ 254
Query: 972 PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQD 1031
+ I + Q +FSAT + S+ +
Sbjct: 255 DQSIRIQR-----MLPRNCQMLLFSATF-----------------------EDSVWKFAQ 286
Query: 1032 LLNIKSPKIVDLTEKIGITKTLTESKI-----LCKHDEK--DSYLYYFILQHPGRTLVFC 1084
+ + P ++ L + T I LC ++ + + + ++FC
Sbjct: 287 KV-VPDPNVIKLK-----REEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFC 340
Query: 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144
++ + L L+ L M QR ++RFR+ +L+ T+V ARG+D+
Sbjct: 341 HTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVE 400
Query: 1145 GIEHVIHYHVPRT------SEIYIHRSGRTARANNEGLTLVLIESDE 1185
+ VI++ +P +E Y+HR GRT R GL + +++S
Sbjct: 401 QVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 4e-37
Identities = 67/343 (19%), Positives = 128/343 (37%), Gaps = 70/343 (20%)
Query: 46 AENNEEEVEEAEADKEKTEGINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKT 105
++ V+E EA E +++ +++ A +
Sbjct: 3 TDSWALAVDEQEAAAESLSNLHL-------------KEEKIKPDTNGAVVKTNANAEKTD 49
Query: 106 EEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRA 165
EE + D + L + + + E+L+ D ++ + + + + +++
Sbjct: 50 EEEKEDRAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYS---VKSFEELRLKPQLLQG 106
Query: 166 LYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 224
+Y GF P+KIQ +P L ++++ +++G+GKT AF + +L+ + + P
Sbjct: 107 VYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ-- 164
Query: 225 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK 284
L L+PT ELA+Q I GK
Sbjct: 165 -------------------------------------CLCLSPTYELALQTGKVIEQMGK 187
Query: 285 YTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQ-LGHFHLTELYKINYLVI 342
+ P +K+A V G E+ +I I++ TPG + ++ L KI V+
Sbjct: 188 FYPELKLAYAVRGNKLERGQKIS---EQIVIGTPGTVLDWCSKLKFIDPK---KIKVFVL 241
Query: 343 DETDRMIES-GHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
DE D MI + GH + I + Q ++ S F +
Sbjct: 242 DEADVMIATQGHQDQSIRIQR-----MLPRNCQMLLFSATFED 279
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 9e-23
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+ ++FC++ + L L+ L M QR ++RFR+ +L+
Sbjct: 330 AITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVT 389
Query: 601 TDVAARGLDIPGIEHVIHYHVPRT------SEIYIHRSGRTARANNEGLTVVLIESDE 652
T+V ARG+D+ + VI++ +P +E Y+HR GRT R GL V +++S
Sbjct: 390 TNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-12
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
L L+PT ELA+Q I GK+ P +K+A V G E+ +I I++ TPG
Sbjct: 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKIS---EQIVIGTPG 219
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 226 bits (579), Expect = 4e-65
Identities = 98/454 (21%), Positives = 177/454 (38%), Gaps = 96/454 (21%)
Query: 749 NKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALL-ARK 807
N +EV + + + + + +++ +Y GF P+KIQ +P L +
Sbjct: 6 NTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQ 65
Query: 808 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 867
+++ +++G+GKT AF + +L+ + + P
Sbjct: 66 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ---------------------------- 97
Query: 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKC 926
L L+PT ELA+Q I GK+ P +K+A V G E+ +I
Sbjct: 98 -----------CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKIS--- 143
Query: 927 PHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMT 984
I++ TPG + ++ L KI V+DE D MI + GH + I
Sbjct: 144 EQIVIGTPGTVLDWCSKLKFIDPK---KIKVFVLDEADVMIATQGHQDQSIRIQR----- 195
Query: 985 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLT 1044
+ Q +FSAT + S+ + + + P ++ L
Sbjct: 196 MLPRNCQMLLFSATF-----------------------EDSVWKFAQKV-VPDPNVIKLK 231
Query: 1045 EKIGITKTLTESKI-----LCKHDEK--DSYLYYFILQHPGRTLVFCNSISSVKRLTQLL 1097
+ T I LC ++ + + + ++FC++ + L L
Sbjct: 232 -----REEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAEL 286
Query: 1098 TMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRT 1157
+ L M QR ++RFR+ +L+ T+V ARG+D+ + VI++ +P
Sbjct: 287 SKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD 346
Query: 1158 ------SEIYIHRSGRTARANNEGLTLVLIESDE 1185
+E Y+HR GRT R GL + +++S
Sbjct: 347 KDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 3e-34
Identities = 57/257 (22%), Positives = 101/257 (39%), Gaps = 54/257 (21%)
Query: 132 NKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALL-ARK 190
N +EV + + + + + +++ +Y GF P+KIQ +P L +
Sbjct: 6 NTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQ 65
Query: 191 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250
+++ +++G+GKT AF + +L+ + + P
Sbjct: 66 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ---------------------------- 97
Query: 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKC 309
L L+PT ELA+Q I GK+ P +K+A V G E+ +I
Sbjct: 98 -----------CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKIS--- 143
Query: 310 PHILVATPGRLWEFIQ-LGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMT 367
I++ TPG + ++ L KI V+DE D MI + GH + I
Sbjct: 144 EQIVIGTPGTVLDWCSKLKFIDPK---KIKVFVLDEADVMIATQGHQDQSIRIQR----- 195
Query: 368 ETSQPRQTMIESGHFPE 384
+ Q ++ S F +
Sbjct: 196 MLPRNCQMLLFSATFED 212
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 7e-24
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
+ ++FC++ + L L+ L M QR ++RFR+ +L+
Sbjct: 263 AITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVT 322
Query: 601 TDVAARGLDIPGIEHVIHYHVPRT------SEIYIHRSGRTARANNEGLTVVLIESDE 652
T+V ARG+D+ + VI++ +P +E Y+HR GRT R GL V +++S
Sbjct: 323 TNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 7e-13
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
L L+PT ELA+Q I GK+ P +K+A V G E+ +I I++ TPG
Sbjct: 98 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKIS---EQIVIGTPG 152
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 221 bits (565), Expect = 2e-63
Identities = 76/475 (16%), Positives = 152/475 (32%), Gaps = 83/475 (17%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+N E +K K T Q + ++ K A TG GKT + L
Sbjct: 4 WNEYEDFRSFFKKKFGKDLTGYQRLWAK-RIVQGKSFTMVAPTGVGKTTFGMMTAL---- 58
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+K + + ++ PT L Q
Sbjct: 59 -----------------------------------WLARKGKK---SALVFPTVTLVKQT 80
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC----PHILVATPGRLWEFIQLGHFHL 948
+ VK+ M E++ + HILV + + +
Sbjct: 81 LERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFV-----SKNREK 134
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008
+ +++ +D+ D ++++ +NI + M + FS
Sbjct: 135 LSQKRFDFVFVDDVDAVLKAS-----RNIDTLLMMVGIPEEIIRKAFSTIK---QGKIYE 186
Query: 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 1068
K V + R L + + + + + +T +I + EK
Sbjct: 187 RPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEKLVE 246
Query: 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128
L L+F + K L + L K + + KN + F+
Sbjct: 247 LLEIF---RDGILIFAQTEEEGKELYEYLKRFK-----FNVGETWSEFEKNFEDFKVGKI 298
Query: 1129 SILLATDV----AARGLDIP-GIEHVIHYHVPRTSEI--YIHRSGRTARANNEGLTLVLI 1181
+IL+ RG+D+P I++VI + P ++ YI SGR++R N L +
Sbjct: 299 NILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVS 358
Query: 1182 ESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNR 1236
E ++F SL+ ++ +E ++ + + + + +E +++
Sbjct: 359 VIFEED--EEIFESLKTRL---LLIAEEEIIEEAE--ANWKELVHEVEESRRRSE 406
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 5e-55
Identities = 78/558 (13%), Positives = 149/558 (26%), Gaps = 161/558 (28%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+N E +K K T Q + ++ K A TG GKT + L
Sbjct: 4 WNEYEDFRSFFKKKFGKDLTGYQRLWAK-RIVQGKSFTMVAPTGVGKTTFGMMTAL---- 58
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+K + + ++ PT L Q
Sbjct: 59 -----------------------------------WLARKGKK---SALVFPTVTLVKQT 80
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC----PHILVATPGRLWEFIQLGHFHL 331
+ VK+ M E++ + HILV + + +
Sbjct: 81 LERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFV-----SKNREK 134
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ +++ +D+ D ++++ +NI
Sbjct: 135 LSQKRFDFVFVDDVDAVLKAS---------------------------------RNIDTL 161
Query: 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI 451
+ M + FS K V + R L +
Sbjct: 162 LMMVGIPEEIIRKAFSTIK---QGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN 218
Query: 452 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLT 511
+ I + + K+V+L
Sbjct: 219 FTVG-----RLVSVARNI------THVRIS-----------SRSKE--------KLVELL 248
Query: 512 EKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSP 571
E L+F + K L + L K
Sbjct: 249 EIFR-----------------------------DGILIFAQTEEEGKELYEYLKRFK--- 276
Query: 572 LPLHASMNQRQRLKNLDRFRDQNNSILLATDV----AARGLDIP-GIEHVIHYHVPRTSE 626
+ + KN + F+ +IL+ RG+D+P I++VI + P +
Sbjct: 277 --FNVGETWSEFEKNFEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPD 334
Query: 627 I--YIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNE-EEERAEADKEKTEDI 683
+ YI SGR++R N L + E + +L+ EEE E + +++
Sbjct: 335 VYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKEL 394
Query: 684 NVTVSSKKKKLKRKQNPS 701
V +++ +R+ +
Sbjct: 395 VHEVEESRRRSERELTDT 412
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 2e-11
Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC----PHILVATP 1411
+ ++ PT L Q + VK+ M E++ + HILV +
Sbjct: 67 SALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST 125
Query: 1412 GALS--LKRIDLAKSIEYL 1428
+S +++ + +++
Sbjct: 126 QFVSKNREKLSQKR-FDFV 143
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 191 bits (488), Expect = 4e-55
Identities = 82/279 (29%), Positives = 122/279 (43%), Gaps = 49/279 (17%)
Query: 727 SDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQK 786
H + + S + + S + + + + + A Q
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQL 61
Query: 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846
G+ PTKIQ +P AL +DI+G AETGSGKT AF +PIL
Sbjct: 62 GWTKPTKIQIEAIPLAL-QGRDIIGLAETGSGKTGAFALPIL------------------ 102
Query: 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK 906
L E T +L+AL+L PTRELA Q+ G V+
Sbjct: 103 ----------NALLE-----------TPQRLFALVLTPTRELAFQISEQFEALGSSIGVQ 141
Query: 907 VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG-HFHLTELYKINYLVIDETDRM 965
A +VGG+ + Q L K PHI++ATPGRL + ++ F+L + YLV+DE DR+
Sbjct: 142 SAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLR---ALKYLVMDEADRI 198
Query: 966 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004
+ E+ IL + + R+TF+FSAT+T ++
Sbjct: 199 LNMDFETEVDKILKVI-----PRDRKTFLFSATMTKKVQ 232
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 2e-52
Identities = 84/313 (26%), Positives = 122/313 (38%), Gaps = 84/313 (26%)
Query: 105 TEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDM-FVQMAEWVKFNIPETII 163
+ + + E + E F + + + +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMEEHDSPTEASQPIVEEEETKTFKDL------GVTDVLC 55
Query: 164 RALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTE 223
A Q G+ PTKIQ +P AL +DI+G AETGSGKT AF +PIL
Sbjct: 56 EACDQLGWTKPTKIQIEAIPLAL-QGRDIIGLAETGSGKTGAFALPIL------------ 102
Query: 224 EDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 283
L E T +L+AL+L PTRELA Q+ G
Sbjct: 103 ----------------NALLE-----------TPQRLFALVLTPTRELAFQISEQFEALG 135
Query: 284 KYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG-HFHLTELYKINYLVI 342
V+ A +VGG+ + Q L K PHI++ATPGRL + ++ F+L + YLV+
Sbjct: 136 SSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLR---ALKYLVM 192
Query: 343 DETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQ 402
DE DR++ E+ IL + PR R+
Sbjct: 193 DEADRILNMDFETEVDKILKVI-------PRD--------------------------RK 219
Query: 403 TFVFSATLTHSLK 415
TF+FSAT+T ++
Sbjct: 220 TFLFSATMTKKVQ 232
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 4e-20
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 1341 QLLIFESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 1400
L+ + L AL+L PTRELA Q+ G V+ A +VGG+ + Q L
Sbjct: 103 NALLETPQRLF----ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL 158
Query: 1401 NKCPHILVATPGAL-----SLKRIDLAKSIEYL 1428
K PHI++ATPG L + K +L ++++YL
Sbjct: 159 AKKPHIIIATPGRLIDHLENTKGFNL-RALKYL 190
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 187 bits (477), Expect = 2e-53
Identities = 81/306 (26%), Positives = 126/306 (41%), Gaps = 56/306 (18%)
Query: 713 NDPDDQVNKTEEIQSDEPHSKKLKQKKKKKQTYTSANKELLEVDTSNNEDM-FVQMAEWV 771
+ + + + +K S L T ED F +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMNNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCN-- 59
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
+ E ++A+ + GF T+IQ + LL +D++ AA+TGSGKTLAF IP +
Sbjct: 60 --LVNENTLKAIKEMGFTNMTEIQHKSIR-PLLEGRDLLAAAKTGSGKTLAFLIPAV--- 113
Query: 832 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 891
E++ +L RN LIL+PTRELA+Q
Sbjct: 114 ----------------------ELIVKLR----------FMPRNGTGVLILSPTRELAMQ 141
Query: 892 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT-- 949
+ + + ++GG + + + L +I+VATPGRL L H T
Sbjct: 142 TFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRL-----LDHMQNTPG 196
Query: 950 -ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN--S 1006
+ LVIDE DR+++ G ELK I+ + RQT +FSAT T +++
Sbjct: 197 FMYKNLQCLVIDEADRILDVGFEEELKQIIKLL-----PTRRQTMLFSATQTRKVEDLAR 251
Query: 1007 LNLKKG 1012
++LKK
Sbjct: 252 ISLKKE 257
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 2e-50
Identities = 82/334 (24%), Positives = 128/334 (38%), Gaps = 84/334 (25%)
Query: 96 NDPDDQVNKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDM-FVQMAEWV 154
+ + + + +K S L T ED F +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMNNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCN-- 59
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
+ E ++A+ + GF T+IQ + LL +D++ AA+TGSGKTLAF IP +
Sbjct: 60 --LVNENTLKAIKEMGFTNMTEIQHKSIR-PLLEGRDLLAAAKTGSGKTLAFLIPAV--- 113
Query: 215 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 274
E++ +L RN LIL+PTRELA+Q
Sbjct: 114 ----------------------ELIVKLR----------FMPRNGTGVLILSPTRELAMQ 141
Query: 275 VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT-- 332
+ + + ++GG + + + L +I+VATPGRL L H T
Sbjct: 142 TFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRL-----LDHMQNTPG 196
Query: 333 -ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
+ LVIDE DR+++ G ELK I+ + P +
Sbjct: 197 FMYKNLQCLVIDEADRILDVGFEEELKQIIKLL-------PTR----------------- 232
Query: 392 VTMTETSQPRQTFVFSATLTHSLKN--SLNLKKG 423
RQT +FSAT T +++ ++LKK
Sbjct: 233 ---------RQTMLFSATQTRKVEDLARISLKKE 257
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 1e-15
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
LIL+PTRELA+Q + + + ++GG + + + L +I+VATPG L
Sbjct: 129 VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRL 187
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 185 bits (472), Expect = 4e-53
Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 50/259 (19%)
Query: 749 NKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 808
+ + + + + ++ + F + + ++ L + ++ T+IQ + AL KD
Sbjct: 6 RESISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLAL-QGKD 64
Query: 809 IVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868
++GAA+TGSGKTLAF +P+L E L L+
Sbjct: 65 VLGAAKTGSGKTLAFLVPVL-------------------------EALYRLQ-------- 91
Query: 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928
+ + L LI++PTRELA Q + GK ++GG + + +N +
Sbjct: 92 --WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN-IN 148
Query: 929 ILVATPGRLWEFIQLGHFHLT---ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 985
ILV TPGRL L H T + LV+DE DR+++ G + +++ +
Sbjct: 149 ILVCTPGRL-----LQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENL---- 199
Query: 986 TSQPRQTFVFSATLTHSLK 1004
+ RQT +FSAT T S+K
Sbjct: 200 -PKKRQTLLFSATQTKSVK 217
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 3e-50
Identities = 70/287 (24%), Positives = 118/287 (41%), Gaps = 78/287 (27%)
Query: 132 NKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKD 191
+ + + + + ++ + F + + ++ L + ++ T+IQ + AL KD
Sbjct: 6 RESISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLAL-QGKD 64
Query: 192 IVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 251
++GAA+TGSGKTLAF +P+L E L L+
Sbjct: 65 VLGAAKTGSGKTLAFLVPVL-------------------------EALYRLQ-------- 91
Query: 252 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311
+ + L LI++PTRELA Q + GK ++GG + + +N +
Sbjct: 92 --WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN-IN 148
Query: 312 ILVATPGRLWEFIQLGHFHLT---ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE 368
ILV TPGRL L H T + LV+DE DR+++ G + +++ +
Sbjct: 149 ILVCTPGRL-----LQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENL---- 199
Query: 369 TSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 415
P++ RQT +FSAT T S+K
Sbjct: 200 ---PKK--------------------------RQTLLFSATQTKSVK 217
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 1e-15
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
LI++PTRELA Q + GK ++GG + + +N +ILV TPG L
Sbjct: 100 VLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN-INILVCTPGRL 157
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 2e-52
Identities = 75/226 (33%), Positives = 107/226 (47%), Gaps = 35/226 (15%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ TI + ++ PT IQ +P A+L +DI+ A+TGSGKT AF IPI+ +V
Sbjct: 28 LKLDPTIRNNILLASYQRPTPIQKNAIP-AILEHRDIMACAQTGSGKTAAFLIPIINHLV 86
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ N + LILAPTRELAIQ+
Sbjct: 87 CQDLNQQRYSKTAYPK------------------------------CLILAPTRELAIQI 116
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ TP++ V GG T Q+R + H+LVATPGRL +FI+ L
Sbjct: 117 LSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK---ISLE 173
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
Y+V+DE DRM++ G P+++ I++ M RQT +FSAT
Sbjct: 174 FCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGIN-RQTLMFSAT 218
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 4e-50
Identities = 74/229 (32%), Positives = 108/229 (47%), Gaps = 35/229 (15%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ TI + ++ PT IQ +P A+L +DI+ A+TGSGKT AF IPI+ +V
Sbjct: 28 LKLDPTIRNNILLASYQRPTPIQKNAIP-AILEHRDIMACAQTGSGKTAAFLIPIINHLV 86
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+ N + LILAPTRELAIQ+
Sbjct: 87 CQDLNQQRYSKTAYPK------------------------------CLILAPTRELAIQI 116
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ TP++ V GG T Q+R + H+LVATPGRL +FI+ L
Sbjct: 117 LSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK---ISLE 173
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
Y+V+DE DRM++ G P+++ I++ M RQT++ S FP+
Sbjct: 174 FCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGIN-RQTLMFSATFPK 221
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGAL- 1414
LILAPTRELAIQ+ + TP++ V GG T Q+R + H+LVATPG L
Sbjct: 103 CLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLV 162
Query: 1415 ---SLKRIDLAKSIEYL 1428
+I L + +Y+
Sbjct: 163 DFIEKNKISL-EFCKYI 178
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 173 bits (442), Expect = 2e-49
Identities = 70/237 (29%), Positives = 108/237 (45%), Gaps = 52/237 (21%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F II A+ F PT+IQ ++P L + +VG ++TG+GKT A+ +PI+
Sbjct: 9 FPFQPFIIEAIKTLRFYKPTEIQERIIP-GALRGESMVGQSQTGTGKTHAYLLPIM---- 63
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
E +K R ++ A+I APTRELA Q+
Sbjct: 64 -----------------------------------EKIKPERAEVQAVITAPTRELATQI 88
Query: 893 QNHILDAGKYTP----VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
+ L K+ P + C++GG +K L LN PHI++ TPGR+ +FI+
Sbjct: 89 YHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALD- 147
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
++ + LV+DE D M++ G ++ I R + Q VFSAT+ LK
Sbjct: 148 --VHTAHILVVDEADLMLDMGFITDVDQIAAR-----MPKDLQMLVFSATIPEKLKP 197
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 3e-46
Identities = 68/241 (28%), Positives = 109/241 (45%), Gaps = 53/241 (21%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F II A+ F PT+IQ ++P L + +VG ++TG+GKT A+ +PI+
Sbjct: 9 FPFQPFIIEAIKTLRFYKPTEIQERIIP-GALRGESMVGQSQTGTGKTHAYLLPIM---- 63
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
E +K R ++ A+I APTRELA Q+
Sbjct: 64 -----------------------------------EKIKPERAEVQAVITAPTRELATQI 88
Query: 276 QNHILDAGKYTP----VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
+ L K+ P + C++GG +K L LN PHI++ TPGR+ +FI+
Sbjct: 89 YHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALD- 147
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP-ELKNILD 390
++ + LV+DE D M++ G ++ I R + Q ++ S P +LK L
Sbjct: 148 --VHTAHILVVDEADLMLDMGFITDVDQIAAR-----MPKDLQMLVFSATIPEKLKPFLK 200
Query: 391 R 391
+
Sbjct: 201 K 201
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 2e-16
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP----VKVACVVGGMSTEKQLRILNKCPHILVATP 1411
A+I APTRELA Q+ + L K+ P + C++GG +K L LN PHI++ TP
Sbjct: 75 AVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTP 134
Query: 1412 G 1412
G
Sbjct: 135 G 135
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 9e-49
Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 45/231 (19%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+ + N P ++ + ++ F PT IQ+ P AL D+VG A+TGSGKTL++ +P +
Sbjct: 30 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGL-DMVGVAQTGSGKTLSYLLPAI 88
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
I ++ LE + L+LAPTREL
Sbjct: 89 VHINHQ----------------------PFLER------------GDGPICLVLAPTREL 114
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
A QVQ + + +K C+ GG Q+R L + I +ATPGRL +F++ G
Sbjct: 115 AQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK--- 171
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP-RQTFVFSAT 998
T L + YLV+DE DRM++ G P+++ I+D++ +P RQT ++SAT
Sbjct: 172 TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTLMWSAT 216
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 5e-46
Identities = 73/233 (31%), Positives = 115/233 (49%), Gaps = 45/233 (19%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ + N P ++ + ++ F PT IQ+ P AL D+VG A+TGSGKTL++ +P +
Sbjct: 30 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGL-DMVGVAQTGSGKTLSYLLPAI 88
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
I ++ LE + L+LAPTREL
Sbjct: 89 VHINHQ----------------------PFLER------------GDGPICLVLAPTREL 114
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
A QVQ + + +K C+ GG Q+R L + I +ATPGRL +F++ G
Sbjct: 115 AQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK--- 171
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQP-RQTMIESGHFP 383
T L + YLV+DE DRM++ G P+++ I+D++ +P RQT++ S +P
Sbjct: 172 TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTLMWSATWP 218
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
L+LAPTRELA QVQ + + +K C+ GG Q+R L + I +ATPG L
Sbjct: 105 CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRL- 163
Query: 1416 LKRIDL 1421
ID
Sbjct: 164 ---IDF 166
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 3e-47
Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 43/226 (19%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F +++++ + G PT IQS P L D++ A+TG+GKTL++ +P +
Sbjct: 25 FQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGI-DLIVVAQTGTGKTLSYLMPGFIHL- 82
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
P ++ + L+L PTRELA+ V
Sbjct: 83 --DSQPISREQRNGPG------------------------------MLVLTPTRELALHV 110
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ Y +K C+ GG + Q+ ++K I++ATPGRL + L
Sbjct: 111 EAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS---VNLR 166
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998
I YLVIDE D+M++ P+++ IL V RQT + SAT
Sbjct: 167 SITYLVIDEADKMLDMEFEPQIRKILLDVR-----PDRQTVMTSAT 207
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 1e-44
Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 43/228 (18%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F +++++ + G PT IQS P L D++ A+TG+GKTL++ +P +
Sbjct: 25 FQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGI-DLIVVAQTGTGKTLSYLMPGFIHL- 82
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
P ++ + L+L PTRELA+ V
Sbjct: 83 --DSQPISREQRNGPG------------------------------MLVLTPTRELALHV 110
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ Y +K C+ GG + Q+ ++K I++ATPGRL + L
Sbjct: 111 EAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS---VNLR 166
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP 383
I YLVIDE D+M++ P+++ IL V RQT++ S +P
Sbjct: 167 SITYLVIDEADKMLDMEFEPQIRKILLDVR-----PDRQTVMTSATWP 209
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 5e-16
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG--- 1412
L+L PTRELA+ V+ Y +K C+ GG + Q+ ++K I++ATPG
Sbjct: 97 MLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLN 155
Query: 1413 -ALSLKRIDLAKSIEYL 1428
++L +SI YL
Sbjct: 156 DLQMNNSVNL-RSITYL 171
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 7e-47
Identities = 74/227 (32%), Positives = 105/227 (46%), Gaps = 47/227 (20%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F + I+ AL+ +G TPT IQ+ +P L KD++G A TG+GKTLAF +PI
Sbjct: 6 FPLKPEILEALHGRGLTTPTPIQAAALP-LALEGKDLIGQARTGTGKTLAFALPIA---- 60
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
E L +K R AL+L PTRELA+QV
Sbjct: 61 ------------------------ERLAPSQERG----RKPR----ALVLTPTRELALQV 88
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ + + +KV V GG KQ L + +VATPGR ++++ G L+ +
Sbjct: 89 ASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRV- 145
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
V+DE D M+ G E++ +L T RQT +FSATL
Sbjct: 146 --EVAVLDEADEMLSMGFEEEVEALLS-----ATPPSRQTLLFSATL 185
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 7e-44
Identities = 73/237 (30%), Positives = 107/237 (45%), Gaps = 48/237 (20%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F + I+ AL+ +G TPT IQ+ +P L KD++G A TG+GKTLAF +PI
Sbjct: 6 FPLKPEILEALHGRGLTTPTPIQAAALP-LALEGKDLIGQARTGTGKTLAFALPIA---- 60
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
E L +K R AL+L PTRELA+QV
Sbjct: 61 ------------------------ERLAPSQERG----RKPR----ALVLTPTRELALQV 88
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ + + +KV V GG KQ L + +VATPGR ++++ G L+ +
Sbjct: 89 ASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRV- 145
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP-ELKNILDR 391
V+DE D M+ G E++ +L T RQT++ S P K + +R
Sbjct: 146 --EVAVLDEADEMLSMGFEEEVEALLS-----ATPPSRQTLLFSATLPSWAKRLAER 195
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 2e-15
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
AL+L PTRELA+QV + + + +KV V GG KQ L + +VATPG
Sbjct: 75 ALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPG 129
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 4e-46
Identities = 59/233 (25%), Positives = 100/233 (42%), Gaps = 48/233 (20%)
Query: 772 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 831
++ I +++ + GF+ PT IQ +P +L ++++ +A TGSGKTLAF IPIL +
Sbjct: 33 EYKINSRLLQNILDAGFQMPTPIQMQAIP-VMLHGRELLASAPTGSGKTLAFSIPILMQL 91
Query: 832 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 891
+ ALI++PTRELA Q
Sbjct: 92 K--------------------------------------QPANKGFRALIISPTRELASQ 113
Query: 892 VQNHILDAGKYTPVKVACVVGGMS-TEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 950
+ ++ + T ++ + +K +K ILV TP RL ++ +
Sbjct: 114 IHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGID- 172
Query: 951 LYKINYLVIDETDRMIESGH--F-PELKNILDRVTMTETSQPRQTFVFSATLT 1000
L + +LV+DE+D++ E G F +L +I T + + +FSAT
Sbjct: 173 LASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK----VRRAMFSATFA 221
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 2e-44
Identities = 57/258 (22%), Positives = 99/258 (38%), Gaps = 70/258 (27%)
Query: 155 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 214
++ I +++ + GF+ PT IQ +P +L ++++ +A TGSGKTLAF IPIL +
Sbjct: 33 EYKINSRLLQNILDAGFQMPTPIQMQAIP-VMLHGRELLASAPTGSGKTLAFSIPILMQL 91
Query: 215 VNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 274
+ ALI++PTRELA Q
Sbjct: 92 K--------------------------------------QPANKGFRALIISPTRELASQ 113
Query: 275 VQNHILDAGKYTPVKVACVVGGMS-TEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 333
+ ++ + T ++ + +K +K ILV TP RL ++ +
Sbjct: 114 IHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGID- 172
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393
L + +LV+DE+D++ + G +L +I T
Sbjct: 173 LASVEWLVVDESDKL------------FEDGKT-------------GFRDQLASIFLACT 207
Query: 394 MTETSQPRQTFVFSATLT 411
+ + +FSAT
Sbjct: 208 SHK----VRRAMFSATFA 221
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 4e-15
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMS-TEKQLRILNKCPHILVATPGAL 1414
ALI++PTRELA Q+ ++ + T ++ + +K +K ILV TP L
Sbjct: 101 ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRL 160
Query: 1415 ------SLKRIDLAKSIEYL 1428
IDL S+E+L
Sbjct: 161 IYLLKQDPPGIDL-ASVEWL 179
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 5e-45
Identities = 51/234 (21%), Positives = 105/234 (44%), Gaps = 49/234 (20%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ + ++ +++ G++ P+ IQ +P L+ +DI+ A+ G+GK+ A+ IP+L
Sbjct: 8 YCLKRELLMGIFEMGWEKPSPIQEESIP-IALSGRDILARAKNGTGKSGAYLIPLL---- 62
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
E + ++ + A+++ PTRELA+QV
Sbjct: 63 -----------------------------------ERLDLKKDNIQAMVIVPTRELALQV 87
Query: 893 QNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 951
+ K+ KV GG + + L+ H+++ATPGR+ + I+ G +
Sbjct: 88 SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDH- 146
Query: 952 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
+ +V+DE D+++ +++I+ + RQ ++SAT S++
Sbjct: 147 --VQMIVLDEADKLLSQDFVQIMEDIIL-----TLPKNRQILLYSATFPLSVQK 193
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 2e-42
Identities = 50/238 (21%), Positives = 106/238 (44%), Gaps = 50/238 (21%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
+ + ++ +++ G++ P+ IQ +P L+ +DI+ A+ G+GK+ A+ IP+L
Sbjct: 8 YCLKRELLMGIFEMGWEKPSPIQEESIP-IALSGRDILARAKNGTGKSGAYLIPLL---- 62
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
E + ++ + A+++ PTRELA+QV
Sbjct: 63 -----------------------------------ERLDLKKDNIQAMVIVPTRELALQV 87
Query: 276 QNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTEL 334
+ K+ KV GG + + L+ H+++ATPGR+ + I+ G +
Sbjct: 88 SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDH- 146
Query: 335 YKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFP-ELKNILDR 391
+ +V+DE D+++ +++I+ + RQ ++ S FP ++ ++
Sbjct: 147 --VQMIVLDEADKLLSQDFVQIMEDIIL-----TLPKNRQILLYSATFPLSVQKFMNS 197
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 3e-16
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPGAL 1414
A+++ PTRELA+QV + K+ KV GG + + L+ H+++ATPG +
Sbjct: 74 AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRI 133
Query: 1415 SLKRIDLAK 1423
+DL K
Sbjct: 134 ----LDLIK 138
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 8e-45
Identities = 56/251 (22%), Positives = 106/251 (42%), Gaps = 53/251 (21%)
Query: 754 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 813
++ T+ ++ + ++ + E ++R ++ GF+ P+ IQ + ++ D++ A
Sbjct: 4 QIQTNYDK----VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIM-PIIEGHDVLAQA 58
Query: 814 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 873
++G+GKT F I L + + +
Sbjct: 59 QSGTGKTGTFSIAAL---------------------------------------QRIDTS 79
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
AL+LAPTRELA+Q+Q ++ + +KV +GG S + L + I+V T
Sbjct: 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGT 138
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGR+++ IQ F + I ++DE D M+ SG ++ I Q
Sbjct: 139 PGRVFDNIQRRRFRTDK---IKMFILDEADEMLSSGFKEQIYQIFT-----LLPPTTQVV 190
Query: 994 VFSATLTHSLK 1004
+ SAT+ + +
Sbjct: 191 LLSATMPNDVL 201
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 5e-41
Identities = 56/279 (20%), Positives = 106/279 (37%), Gaps = 81/279 (29%)
Query: 137 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 196
++ T+ ++ + ++ + E ++R ++ GF+ P+ IQ + ++ D++ A
Sbjct: 4 QIQTNYDK----VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIM-PIIEGHDVLAQA 58
Query: 197 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 256
++G+GKT F I L + + +
Sbjct: 59 QSGTGKTGTFSIAAL---------------------------------------QRIDTS 79
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
AL+LAPTRELA+Q+Q ++ + +KV +GG S + L + I+V T
Sbjct: 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGT 138
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGR+++ IQ F + I ++DE D M+ SG ++ I
Sbjct: 139 PGRVFDNIQRRRFRTDK---IKMFILDEADEMLSSGFKEQIYQIFT-------------- 181
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 415
Q + SAT+ + +
Sbjct: 182 -------------------LLPPTTQVVLLSATMPNDVL 201
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 3e-16
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
AL+LAPTRELA+Q+Q ++ + +KV +GG S + L + I+V TPG
Sbjct: 85 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPG 140
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 2e-44
Identities = 62/265 (23%), Positives = 111/265 (41%), Gaps = 50/265 (18%)
Query: 743 QTYTSANKELLEVDTSNNEDMFVQMAE-WVKFNIPETIIRALYQKGFKTPTKIQSMVMPS 801
+ S+ +E L E + ++ + + N+ E+++R +Y GF+ P+ IQ +
Sbjct: 4 HHHHSSGRENLYFQGGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAII- 62
Query: 802 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 861
+ D++ A++G+GKT F I IL
Sbjct: 63 PCIKGYDVIAQAQSGTGKTATFAISIL--------------------------------- 89
Query: 862 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 921
+ ++ + AL+LAPTRELA Q+Q IL G Y +GG + +++
Sbjct: 90 ------QQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQ 143
Query: 922 IL-NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDR 980
L + PHI+V TPGR+++ + + I V+DE D M+ G ++ I
Sbjct: 144 KLQAEAPHIVVGTPGRVFDMLNRRYLSPKW---IKMFVLDEADEMLSRGFKDQIYEIFQ- 199
Query: 981 VTMTETSQPRQTFVFSATLTHSLKN 1005
+ + Q + SAT+ +
Sbjct: 200 ----KLNTSIQVVLLSATMPTDVLE 220
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 1e-40
Identities = 62/293 (21%), Positives = 111/293 (37%), Gaps = 78/293 (26%)
Query: 126 QTYTSANKELLEVDTSNNEDMFVQMAE-WVKFNIPETIIRALYQKGFKTPTKIQSMVMPS 184
+ S+ +E L E + ++ + + N+ E+++R +Y GF+ P+ IQ +
Sbjct: 4 HHHHSSGRENLYFQGGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAII- 62
Query: 185 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 244
+ D++ A++G+GKT F I IL
Sbjct: 63 PCIKGYDVIAQAQSGTGKTATFAISIL--------------------------------- 89
Query: 245 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 304
+ ++ + AL+LAPTRELA Q+Q IL G Y +GG + +++
Sbjct: 90 ------QQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQ 143
Query: 305 IL-NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDR 363
L + PHI+V TPGR+++ + + I V+DE D M+ G ++ I
Sbjct: 144 KLQAEAPHIVVGTPGRVFDMLNRRYLSPKW---IKMFVLDEADEMLSRGFKDQIYEIFQ- 199
Query: 364 VTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 416
+ + Q + SAT+ +
Sbjct: 200 --------------------------------KLNTSIQVVLLSATMPTDVLE 220
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 2e-16
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL-NKCPHILVATPG 1412
AL+LAPTRELA Q+Q IL G Y +GG + +++ L + PHI+V TPG
Sbjct: 101 ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPG 158
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 3e-44
Identities = 56/260 (21%), Positives = 98/260 (37%), Gaps = 51/260 (19%)
Query: 748 ANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARK 807
++L T + + + A++ + ++ L GF+ P+ +Q +P
Sbjct: 4 TAQDLSSPRTRTGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIP-LGRCGL 62
Query: 808 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 867
D++ A++G+GKT F L
Sbjct: 63 DLIVQAKSGTGKTCVFSTIAL--------------------------------------- 83
Query: 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKC 926
+ + LILAPTRE+A+Q+ + I G ++ +GG + L K
Sbjct: 84 DSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK- 142
Query: 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPE-LKNILDRVTMTE 985
HI V +PGR+ + I+L + + I ++DE D+++E G F E + I
Sbjct: 143 CHIAVGSPGRIKQLIELDYLNPGS---IRLFILDEADKLLEEGSFQEQINWIYS-----S 194
Query: 986 TSQPRQTFVFSATLTHSLKN 1005
+Q SAT L N
Sbjct: 195 LPASKQMLAVSATYPEFLAN 214
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 4e-41
Identities = 56/264 (21%), Positives = 101/264 (38%), Gaps = 52/264 (19%)
Query: 131 ANKELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARK 190
++L T + + + A++ + ++ L GF+ P+ +Q +P
Sbjct: 4 TAQDLSSPRTRTGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIP-LGRCGL 62
Query: 191 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250
D++ A++G+GKT F L
Sbjct: 63 DLIVQAKSGTGKTCVFSTIAL--------------------------------------- 83
Query: 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKC 309
+ + LILAPTRE+A+Q+ + I G ++ +GG + L K
Sbjct: 84 DSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK- 142
Query: 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPE-LKNILDRVTMTE 368
HI V +PGR+ + I+L + + I ++DE D+++E G F E + I
Sbjct: 143 CHIAVGSPGRIKQLIELDYLNPGS---IRLFILDEADKLLEEGSFQEQINWIYS-----S 194
Query: 369 TSQPRQTMIESGHFP-ELKNILDR 391
+Q + S +P L N L +
Sbjct: 195 LPASKQMLAVSATYPEFLANALTK 218
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 4e-15
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
LILAPTRE+A+Q+ + I G ++ +GG + L K HI V +PG
Sbjct: 95 ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK-CHIAVGSPG 151
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 5e-44
Identities = 61/230 (26%), Positives = 97/230 (42%), Gaps = 51/230 (22%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F + ++RA+ GF+ P+++Q +P A+L D++ A++G GKT F + L +
Sbjct: 19 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGM-DVLCQAKSGMGKTAVFVLATLQQLE 77
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ L++ TRELA Q+
Sbjct: 78 PVTGQVS---------------------------------------VLVMCHTRELAFQI 98
Query: 893 QNHILDAGKYTP-VKVACVVGGMSTEKQLRIL-NKCPHILVATPGRLWEFIQLGHFHLTE 950
KY P VKVA GG+S +K +L CPHI+V TPGR+ + +L
Sbjct: 99 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLK- 157
Query: 951 LYKINYLVIDETDRMIESGHFPE-LKNILDRVTMTETSQPRQTFVFSATL 999
I + ++DE D+M+E ++ I T +Q +FSATL
Sbjct: 158 --HIKHFILDECDKMLEQLDMRRDVQEIFR-----MTPHEKQVMMFSATL 200
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 6e-41
Identities = 62/257 (24%), Positives = 101/257 (39%), Gaps = 77/257 (29%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F + ++RA+ GF+ P+++Q +P A+L D++ A++G GKT F + L +
Sbjct: 19 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGM-DVLCQAKSGMGKTAVFVLATLQQLE 77
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
+ L++ TRELA Q+
Sbjct: 78 PVTGQVS---------------------------------------VLVMCHTRELAFQI 98
Query: 276 QNHILDAGKYTP-VKVACVVGGMSTEKQLRIL-NKCPHILVATPGRLWEFIQLGHFHLTE 333
KY P VKVA GG+S +K +L CPHI+V TPGR+ + +L
Sbjct: 99 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLK- 157
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393
I + ++DE D+M L+++ M +++ I
Sbjct: 158 --HIKHFILDECDKM------------LEQLDMRR---------------DVQEIFR--- 185
Query: 394 MTETSQPRQTFVFSATL 410
T +Q +FSATL
Sbjct: 186 --MTPHEKQVMMFSATL 200
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 7e-17
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRIL-NKCPHILVATPG 1412
L++ TRELA Q+ KY P VKVA GG+S +K +L CPHI+V TPG
Sbjct: 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPG 143
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 9e-42
Identities = 68/337 (20%), Positives = 134/337 (39%), Gaps = 63/337 (18%)
Query: 673 AEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHS 732
++ E ++S+ K ++ + + + + KT+E + ++ +
Sbjct: 6 WALAVDEQEAAAESLSNLHLKEEKIKPDT-------NGAVVKTNANAEKTDEEEKEDRAA 58
Query: 733 KKLKQKKKKKQTYTSANK-ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTP 791
+ L K + + N+ E+L+ D ++ + + + + +++ +Y GF P
Sbjct: 59 QSLLNKLIRSNLVDNTNQVEVLQRDPNSPLY---SVKSFEELRLKPQLLQGVYAMGFNRP 115
Query: 792 TKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEE 850
+KIQ +P L ++++ +++G+GKT AF + +L+ + + P
Sbjct: 116 SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ----------- 164
Query: 851 EAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVAC 909
L L+PT ELA+Q I GK+ P +K+A
Sbjct: 165 ----------------------------CLCLSPTYELALQTGKVIEQMGKFYPELKLAY 196
Query: 910 VVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES- 968
V G E+ +I I++ TPG + ++ + KI V+DE D MI +
Sbjct: 197 AVRGNKLERGQKIS---EQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVMIATQ 251
Query: 969 GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
GH + I + Q +FSAT S+
Sbjct: 252 GHQDQSIRIQ-----RMLPRNCQMLLFSATFEDSVWK 283
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 3e-39
Identities = 65/335 (19%), Positives = 134/335 (40%), Gaps = 63/335 (18%)
Query: 54 EEAEADKEKTEGINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEP 113
+ ++ E ++S+ K ++ + + + + KT+E + ++
Sbjct: 4 DSWALAVDEQEAAAESLSNLHLKEEKIKPDT-------NGAVVKTNANAEKTDEEEKEDR 56
Query: 114 SSKKLKQKKKKKQTYTSANK-ELLEVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFK 172
+++ L K + + N+ E+L+ D ++ + + + + +++ +Y GF
Sbjct: 57 AAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLY---SVKSFEELRLKPQLLQGVYAMGFN 113
Query: 173 TPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231
P+KIQ +P L ++++ +++G+GKT AF + +L+ + + P
Sbjct: 114 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ--------- 164
Query: 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKV 290
L L+PT ELA+Q I GK+ P +K+
Sbjct: 165 ------------------------------CLCLSPTYELALQTGKVIEQMGKFYPELKL 194
Query: 291 ACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE 350
A V G E+ +I I++ TPG + ++ + KI V+DE D MI
Sbjct: 195 AYAVRGNKLERGQKIS---EQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVMIA 249
Query: 351 S-GHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384
+ GH + I + Q ++ S F +
Sbjct: 250 TQGHQDQSIRIQ-----RMLPRNCQMLLFSATFED 279
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 9e-13
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRILNKCPHILVATPG 1412
L L+PT ELA+Q I GK+ P +K+A V G E+ +I I++ TPG
Sbjct: 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKIS---EQIVIGTPG 219
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 3e-34
Identities = 48/136 (35%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 519 TLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
T E + + L + + P R +VF + + + + Q L L LH
Sbjct: 5 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGD 64
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
++Q +R + L FR +L+ATDVAARGLDIP ++ V+HY +P +E Y HRSGRT R
Sbjct: 65 LSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGR 124
Query: 638 ANNEGLTVVLIESDEI 653
A G V+L E
Sbjct: 125 AGRGGRVVLLYGPRER 140
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 3e-34
Identities = 50/150 (33%), Positives = 75/150 (50%), Gaps = 5/150 (3%)
Query: 1052 TLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110
T E + + L + + P R +VF + + + + Q L L LH
Sbjct: 5 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGD 64
Query: 1111 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
++Q +R + L FR +L+ATDVAARGLDIP ++ V+HY +P +E Y HRSGRT R
Sbjct: 65 LSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGR 124
Query: 1171 ANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
A G ++L E + +LE+ V
Sbjct: 125 AGRGGRVVLLYGPRE----RRDVEALERAV 150
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 8e-34
Identities = 48/136 (35%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 519 TLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
T E + + L + + P R +VF + + + + Q L L LH
Sbjct: 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGD 61
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
M+Q +R + + FR +L+ATDVAARGLDIP ++ V+HY +P +E Y HRSGRT R
Sbjct: 62 MSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGR 121
Query: 638 ANNEGLTVVLIESDEI 653
A G V+L E
Sbjct: 122 AGRGGRVVLLYGPRER 137
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 8e-34
Identities = 50/150 (33%), Positives = 75/150 (50%), Gaps = 5/150 (3%)
Query: 1052 TLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110
T E + + L + + P R +VF + + + + Q L L LH
Sbjct: 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGD 61
Query: 1111 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
M+Q +R + + FR +L+ATDVAARGLDIP ++ V+HY +P +E Y HRSGRT R
Sbjct: 62 MSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGR 121
Query: 1171 ANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
A G ++L E + +LE+ V
Sbjct: 122 AGRGGRVVLLYGPRE----RRDVEALERAV 147
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 3e-33
Identities = 40/119 (33%), Positives = 65/119 (54%)
Query: 525 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
K + K YL + + P L+F + V + + L + + +H +Q +R
Sbjct: 35 EYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERT 94
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
K ++ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT + N G+
Sbjct: 95 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGI 153
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 3e-33
Identities = 40/119 (33%), Positives = 65/119 (54%)
Query: 1058 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 1117
K + K YL + + P L+F + V + + L + + +H +Q +R
Sbjct: 35 EYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERT 94
Query: 1118 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
K ++ FR+ +L+ATDVA++GLD P I+HVI+Y +P E Y+HR GRT + N G+
Sbjct: 95 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGI 153
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 2e-32
Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Query: 528 KHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
+ K + L + + Q R++VF V L L + L M Q +R +
Sbjct: 13 DLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEA 72
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646
+ R + ++L+ATDVAARG+DIP + HV ++ +PR+ + Y+HR GRTARA +G +
Sbjct: 73 IKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS 132
Query: 647 LIESDEIPL 655
L+E+ + L
Sbjct: 133 LVEAHDHLL 141
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 5e-32
Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Query: 1061 KHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 1119
+ K + L + + Q R++VF V L L + L M Q +R +
Sbjct: 13 DLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEA 72
Query: 1120 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV 1179
+ R + ++L+ATDVAARG+DIP + HV ++ +PR+ + Y+HR GRTARA +G +
Sbjct: 73 IKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS 132
Query: 1180 LIESDEIPL 1188
L+E+ + L
Sbjct: 133 LVEAHDHLL 141
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 5e-32
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 6/146 (4%)
Query: 516 ITKTLTESKI-----LCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKC 569
+ LT I + + K S L + ++P ++FC + V +LT L L
Sbjct: 1 MAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGY 60
Query: 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
+H M Q R ++ F+ L+ATDVAARG+DI I VI+Y +P E Y+
Sbjct: 61 PCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYV 120
Query: 630 HRSGRTARANNEGLTVVLIESDEIPL 655
HR+GRT RA N+G + + + E
Sbjct: 121 HRTGRTGRAGNKGKAISFVTAFEKRF 146
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 7e-32
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 10/156 (6%)
Query: 1049 ITKTLTESKI-----LCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKC 1102
+ LT I + + K S L + ++P ++FC + V +LT L L
Sbjct: 1 MAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGY 60
Query: 1103 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162
+H M Q R ++ F+ L+ATDVAARG+DI I VI+Y +P E Y+
Sbjct: 61 PCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYV 120
Query: 1163 HRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198
HR+GRT RA N+G + + + E + +E+
Sbjct: 121 HRTGRTGRAGNKGKAISFVTAFE----KRFLADIEE 152
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 8e-32
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 525 ILCKHDEKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 582
+ + +K S+L + TLVF + L L + +H +QR
Sbjct: 25 VWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 84
Query: 583 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
R + L +FR + IL+AT VAARGLDI ++HVI++ +P E Y+HR GRT R N G
Sbjct: 85 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 144
Query: 643 L 643
L
Sbjct: 145 L 145
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 8e-32
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 1058 ILCKHDEKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 1115
+ + +K S+L + TLVF + L L + +H +QR
Sbjct: 25 VWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 84
Query: 1116 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175
R + L +FR + IL+AT VAARGLDI ++HVI++ +P E Y+HR GRT R N G
Sbjct: 85 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 144
Query: 1176 L 1176
L
Sbjct: 145 L 145
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 8e-30
Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 10/166 (6%)
Query: 1058 ILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 1116
+ K +EK+ L+ + + + ++F S+ L QLL + +H M Q +R
Sbjct: 11 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 70
Query: 1117 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
L +F+D IL+AT++ RG+DI + +Y +P S+ Y+HR R R +GL
Sbjct: 71 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 130
Query: 1177 --TLVLIESDEIPLYIKMFNSLEK--KVDLPDFPIDESVLSLIKKR 1218
T V E+D K+ N ++ +V++ + P + + S I++
Sbjct: 131 AITFVSDEND-----AKILNDVQDRFEVNISELPDEIDISSYIEQT 171
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 2e-29
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 525 ILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
+ K +EK+ L+ + + + ++F S+ L QLL + +H M Q +R
Sbjct: 11 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 70
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L +F+D IL+AT++ RG+DI + +Y +P S+ Y+HR R R +GL
Sbjct: 71 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 130
Query: 644 TVVLIESDE 652
+ + +
Sbjct: 131 AITFVSDEN 139
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 2e-27
Identities = 92/547 (16%), Positives = 176/547 (32%), Gaps = 96/547 (17%)
Query: 166 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 225
+ ++ P Q ++ + + TG GKTL +
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCK--ETNCLIVLPTGLGKTLIAMMIA--------------- 44
Query: 226 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY 285
E L + L+LAPT+ L +Q
Sbjct: 45 ----------EYRLT----------------KYGGKVLMLAPTKPLVLQHAESFRRLFNL 78
Query: 286 TPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDET 345
P K+ + G S E++ + + ++VATP + + G L ++ +V DE
Sbjct: 79 PPEKIVALTGEKSPEERSKAWARA-KVIVATPQTIENDLLAGRISLE---DVSLIVFDEA 134
Query: 346 DRMIESGHFPELKNILDRVT-----MTETSQPRQTMIESGHFPELKNILDRVTMTETSQP 400
R + + + + R + T+ P T + I +E S
Sbjct: 135 HRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPD 194
Query: 401 RQTFV----------------------FSATLTHSLKN--SLNLKKGQSKSKKVSKGDPS 436
+ +V L +LK L + S + +
Sbjct: 195 VRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRA 254
Query: 437 IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEI 496
+ + + + + + L + L + L + + Y + L EE
Sbjct: 255 GQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYI------KKLYEEA 308
Query: 497 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-----PGRTLVFC 551
+ S +I L ++K + K L I + + +VF
Sbjct: 309 KAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFT 368
Query: 552 NSISSVKRLTQLLTM--LKCSPLPLHAS------MNQRQRLKNLDRFRDQNNSILLATDV 603
N + K++ L +K AS ++QR++ LD F ++L+AT V
Sbjct: 369 NYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSV 428
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQE 663
GLD+P ++ V+ Y ++ I R GRT R G ++L+ ++ ++
Sbjct: 429 GEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDEAYYWSSRQ 487
Query: 664 EENNEEE 670
+E +E
Sbjct: 488 KEKIMQE 494
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 81.0 bits (199), Expect = 1e-15
Identities = 52/286 (18%), Positives = 102/286 (35%), Gaps = 16/286 (5%)
Query: 929 ILVATPGRLWEFIQLGHFHLTELYK--INYLVIDETDRMIESGHFPELKNILDRVTMTET 986
+ V P E +L L + K +++ + I I++ M +
Sbjct: 207 VRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINE-EMAKG 265
Query: 987 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK 1046
+ + + + L +++ L + Q S + + + S +I
Sbjct: 266 NHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRM 325
Query: 1047 IGITKTLTESKILCKHDEKDSYLYYFILQH-----PGRTLVFCNSISSVKRLTQLLTM-- 1099
L ++K + K L I + + +VF N + K++ L
Sbjct: 326 KKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDG 385
Query: 1100 LKCSPLPLHAS------MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153
+K AS ++QR++ LD F ++L+AT V GLD+P ++ V+ Y
Sbjct: 386 IKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYE 445
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199
++ I R GRT R + +++ + Y EK
Sbjct: 446 PVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRDEAYYWSSRQKEKI 491
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 3e-07
Identities = 41/277 (14%), Positives = 85/277 (30%), Gaps = 53/277 (19%)
Query: 783 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 842
+ ++ P Q ++ + + TG GKTL +
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCK--ETNCLIVLPTGLGKTLIAMMIA--------------- 44
Query: 843 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY 902
E L + L+LAPT+ L +Q
Sbjct: 45 ----------EYRLT----------------KYGGKVLMLAPTKPLVLQHAESFRRLFNL 78
Query: 903 TPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDET 962
P K+ + G S E++ + + ++VATP + + G L ++ +V DE
Sbjct: 79 PPEKIVALTGEKSPEERSKAWARA-KVIVATPQTIENDLLAGRISLE---DVSLIVFDEA 134
Query: 963 DRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 1022
R + + + + R ++ +A+ + + + + +
Sbjct: 135 HRAVGNYAYVFIAREYKR-----QAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRS 189
Query: 1023 DPSIKRLQDLLNIKSPKI-VDLTEKIGITKTLTESKI 1058
+ S + I+ + VDL E + L +
Sbjct: 190 ENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREML 226
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 3e-26
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
G+ ++FC + + K LT + L + QR + RFRD +L+ T+V
Sbjct: 34 IGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV 93
Query: 604 AARGLDIPGIEHVIHYHVPRTS------EIYIHRSGRTARANNEGLTVVLIESDEI 653
ARG+D+ + V+++ +P E Y+HR GRT R +GL +IE DE+
Sbjct: 94 CARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDEL 149
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 9e-26
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
G+ ++FC + + K LT + L + QR + RFRD +L+ T+V
Sbjct: 34 IGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV 93
Query: 1137 AARGLDIPGIEHVIHYHVPRTS------EIYIHRSGRTARANNEGLTLVLIESDEI 1186
ARG+D+ + V+++ +P E Y+HR GRT R +GL +IE DE+
Sbjct: 94 CARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDEL 149
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 6e-26
Identities = 33/110 (30%), Positives = 64/110 (58%)
Query: 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 603
+ ++FCN+ V+ LT L K + +++ + Q++R + FR ++ IL++TD+
Sbjct: 30 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL 89
Query: 604 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653
ARG+D+ + VI+Y +P E YIHR GR R +G+ + + ++++
Sbjct: 90 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDV 139
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-25
Identities = 38/134 (28%), Positives = 71/134 (52%), Gaps = 6/134 (4%)
Query: 1077 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136
+ ++FCN+ V+ LT L K + +++ + Q++R + FR ++ IL++TD+
Sbjct: 30 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL 89
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
ARG+D+ + VI+Y +P E YIHR GR R +G+ + + +++ + L
Sbjct: 90 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED----VGAMREL 145
Query: 1197 EK--KVDLPDFPID 1208
EK + + P D
Sbjct: 146 EKFYSTQIEELPSD 159
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 81.4 bits (200), Expect = 2e-15
Identities = 104/611 (17%), Positives = 183/611 (29%), Gaps = 179/611 (29%)
Query: 94 NTNDPDDQVNKTEEIQ------SDEPSSKKL--KQKKKKKQTYTSANKELLEVD------ 139
+ D + EEI + +L K+++ +E+L ++
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 140 --------TSNNEDMFVQMAE--------WVKFNIP-----ETIIRALYQKGFKTPTKIQ 178
S M+++ + + K+N+ + +AL +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE---------- 146
Query: 179 SMVMPSALLARKDIVGAAETGSGKT-LA--------------FGIPILT--------GIV 215
+ P+ + I G GSGKT +A F I L ++
Sbjct: 147 --LRPAKNVL---IDGVL--GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 216 NKLEN-PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK--LYAL--------- 263
L+ + D N + + + + + A +K + L L
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 264 --------ILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC------ 309
IL TR QV + L A T + + ++ ++ +L K
Sbjct: 260 NAFNLSCKILLTTRF--KQVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 310 --PHILVAT-P---GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDR 363
P ++ T P + E I+ + +K ++ D+ +IES L +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIR-DGLATWDNWK--HVNCDKLTTIIESS----LNVL--- 366
Query: 364 VTMTETSQPRQTMIESGHFPELKNI----LDRVTMTETSQPRQTFVFSATLTHSLKNSLN 419
E ++ R+ FP +I L + V K SL
Sbjct: 367 ----EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV-----NKLHKYSL- 416
Query: 420 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD----E 475
++K Q K +S I + L +K L I + K D
Sbjct: 417 VEK-QPKESTIS-----IPSIYLELKVKLENEYALHRSI-VDH-YNIPKTFDSDDLIPPY 468
Query: 476 KDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI-VD---LTEKI-----------GITKTL 520
D Y Y I H E L + +D L +KI I TL
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLF----RMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 521 TESKI----LCKHDEKDSYLYY----FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPL 572
+ K +C +D K L F+ + L+ S L ++ M + +
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKI-EENLI----CSKYTDLLRIALMAEDEAI 579
Query: 573 PLHASMNQRQR 583
A Q QR
Sbjct: 580 FEEAH-KQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.0 bits (178), Expect = 7e-13
Identities = 86/532 (16%), Positives = 152/532 (28%), Gaps = 165/532 (31%)
Query: 649 ESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSEL 708
E+ E + K L E+ D + +D+ ++ SK+ E+ +
Sbjct: 10 ETGEHQYQYKDILSV---FEDAFVDNFDCKDVQDMPKSILSKE------------EIDHI 54
Query: 709 SANTNDPDDQV--------NKTEEI---------QSD-----EPHSKKLKQKKKKKQTYT 746
+ D +K EE+ + + P + +Q + Y
Sbjct: 55 -IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 747 SANKELLEVDTSNNEDMFVQMAEWVKFNIP-----ETIIRALYQKGFKTPTKIQSMVMPS 801
L N+ +F K+N+ + +AL + + P+
Sbjct: 114 EQRDRL-----YNDNQVFA------KYNVSRLQPYLKLRQALLE------------LRPA 150
Query: 802 ALLARKDIVGAAETGSGKT-LA--------------FGIPILT--------GIVNKLEN- 837
+ I G GSGKT +A F I L ++ L+
Sbjct: 151 KNVL---IDGVL--GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 838 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK--LYAL--------------- 880
+ D N + + + + + A +K + L L
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 881 --ILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC--------PH-- 928
IL TR QV + L A T + + ++ ++ +L K P
Sbjct: 266 CKILLTTRF--KQVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 929 -----ILVATPGRL-------WEFI-QLGHFHLTELYK--INYLVIDETDRMIES-GHFP 972
++ W+ + LT + + +N L E +M + FP
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 973 ELKNI----LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKR 1028
+I L + V K SL ++K Q K +S I
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVV-----NKLHKYSL-VEK-QPKESTIS-----IPS 430
Query: 1029 LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD----EKDSYLYYFILQH 1076
+ L +K L I + K D D Y Y I H
Sbjct: 431 IYLELKVKLENEYALHRSI-VDH-YNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 2e-11
Identities = 80/524 (15%), Positives = 160/524 (30%), Gaps = 186/524 (35%)
Query: 916 TEKQLR-ILNK--CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE----TDRMIES 968
+ + IL+K HI+++ + + ++ + ++ + + +E
Sbjct: 38 VQDMPKSILSKEEIDHIIMS-KDAV-----------SGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 969 GHFPELKNILDRVTMTETSQP-RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIK 1027
K ++ + TE QP T ++ ++ K VS+ P
Sbjct: 86 VLRINYKFLMSPIK-TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-----VSRLQP-YL 138
Query: 1028 RLQD-LLNIKSPKIVDLTEKIGITKT------LTESKILCKHDEKDSYLYYFILQHPGRT 1080
+L+ LL ++ K V + +G KT K+ CK D K +L
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL----------N 188
Query: 1081 LVFCNSISSV-KRLTQLLTMLKCS-----------PLPLHASMNQRQRLKNLDRFRDQNN 1128
L CNS +V + L +LL + + L +H+ + L+ L + + N
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI---QAELRRLLKSKPYEN 245
Query: 1129 SILLATDV----AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184
+L+ +V A ++ + +I + T R + +T L +
Sbjct: 246 CLLVLLNVQNAKAWNAFNL-------------SCKILL-----TTR--FKQVTDFLSAAT 285
Query: 1185 EIPLYIKMFN-SLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHR 1243
+ + + +L DE SL L K +L
Sbjct: 286 TTHISLDHHSMTLTP---------DEV-KSL------LLK----------------YLD- 312
Query: 1244 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKS 1303
++P + N LS+I + I
Sbjct: 313 ----------------CRPQDLPREVLTTNPR--------------RLSIIAESI----- 337
Query: 1304 IEYLESKIKKNRPDNWLEKAAKDMDIIIDD--ENLIQPNQLLIFESRNLRYSWDALILAP 1361
+ DNW + II+ L +P E R + +
Sbjct: 338 ------RDGLATWDNWKHVNCDKLTTIIESSLNVL-EPA-----EYRKM-F--------- 375
Query: 1362 TRELAIQVQN-HILDAGKYTPVKVACVV-GGMSTEKQLRILNKC 1403
L++ + HI P + ++ + + ++NK
Sbjct: 376 -DRLSVFPPSAHI-------PTILLSLIWFDVIKSDVMVVVNKL 411
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 2e-09
Identities = 117/786 (14%), Positives = 241/786 (30%), Gaps = 265/786 (33%)
Query: 367 TETSQPR---QTMIESGHF-PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK 422
ET + + + ++ F + D + + + + S + + + K
Sbjct: 9 FETGEHQYQYKDILS--VFEDAFVDNFDCKDVQDMPKS----ILS---KEEIDHIIMSKD 59
Query: 423 GQSKSKKV-----SKGDPSIKR-LQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE- 475
S + ++ SK + +++ ++++L I ++ + ++ + + D
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 476 -KDSYLY--YFILQHPGRTLCEEIQD-LLNIKSPKIVDLTEKIGITKT------LTESKI 525
D+ ++ Y + +++ LL ++ K V + +G KT K+
Sbjct: 120 YNDNQVFAKYNV---SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 526 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSV-KRLTQLLTMLKCS-----------PLP 573
CK D K +L L CNS +V + L +LL + + L
Sbjct: 177 QCKMDFKIFWL----------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 574 LHASMNQRQRLKNLDRFRDQNNSILLATDV----AARGLDIPGIEHVIHYHVPRTSEIYI 629
+H+ + L+ L + + N +L+ +V A ++ + +I +
Sbjct: 227 IHSI---QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-------------SCKILL 270
Query: 630 HRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDI--NVTV 687
T R + +T D + T ++ + ++ E + + +
Sbjct: 271 -----TTR--FKQVT------DFLSAATTTHISLDHHSMTLTPDE-----VKSLLLKY-L 311
Query: 688 SSKKKKLKR---KQNPSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQKKKKKQT 744
+ + L R NP +S ++ I+ K K
Sbjct: 312 DCRPQDLPREVLTTNP--RRLSIIAE-------------SIRDGLATWDNWKHVNCDK-- 354
Query: 745 YTSANKELLEV-DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSAL 803
T+ + L V + + MF +++ + F I P+ L
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLS------V------------FPPSAHI-----PTIL 391
Query: 804 LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863
L+ ++ + + D V+ +L + S
Sbjct: 392 LS---------------------LI------WFDVIKSDV---------MVVVNKLHKYS 415
Query: 864 ANTTEFVKKTRNK----LYALILAPTRELAIQVQNH--ILDAGKYTPVKVACVVGGMSTE 917
V+K + + ++ L +L + H I+D Y K
Sbjct: 416 L-----VEKQPKESTISIPSIYLELKVKLENEYALHRSIVD--HYNIPK----------- 457
Query: 918 KQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI 977
L+ + + +GH HL I+ +RM F +
Sbjct: 458 ------TFDSDDLIPPYLDQYFYSHIGH-HLKN--------IEHPERMTL---FRMV--F 497
Query: 978 LDRVTMTETSQPRQTFVF-SATLTH---------SLKNSLN-LKKGQSKSKKVSKGDPSI 1026
LD F F + H S+ N+L LK + DP
Sbjct: 498 LD-------------FRFLEQKIRHDSTAWNASGSILNTLQQLKF---YKPYICDNDPKY 541
Query: 1027 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS 1086
+RL + I+D KI E+ I K+ D L L +F +
Sbjct: 542 ERLVNA-------ILDFLPKIE------ENLICSKY--TD--LLRIALMAEDEA-IFEEA 583
Query: 1087 ISSVKR 1092
V+R
Sbjct: 584 HKQVQR 589
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 76.1 bits (186), Expect = 4e-14
Identities = 75/500 (15%), Positives = 154/500 (30%), Gaps = 68/500 (13%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
+ LA + Q +N + V + G + + + + I+V TP L
Sbjct: 58 VVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQIL- 116
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDR------------VTMTET 369
LT L ++ DE + + L + +T +
Sbjct: 117 -VNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTAS 175
Query: 370 SQPRQTMIESGHFPELKNILDR------VTMTETSQPRQTFV-----------------F 406
+ ++ T+ E Q Q F+ F
Sbjct: 176 VGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF 235
Query: 407 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQD-----LLNIKSPKIVDLTEKIGIT 461
+A +++ + + L + +S+ Q+ ++ + +++ L +K +
Sbjct: 236 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEES 295
Query: 462 KTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI------- 514
+ I +H K + + + E+
Sbjct: 296 RICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQE 355
Query: 515 GITKTLTESKILCKHDEKDSYL-----YYFILQHPGRTLVFCNSISSVKRLTQLLTM--- 566
+ + SK + K L + RTL+F + + V L + +
Sbjct: 356 KEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPI 415
Query: 567 ---LKCSPLPLHAS------MNQRQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHV 616
+K L M + LD F+ ++N +L+AT VA G+DI V
Sbjct: 416 LNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLV 475
Query: 617 IHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEAD 676
+ Y I GR RA +V +++ + + +EE N+ E+ +
Sbjct: 476 VLYEYSGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVENEKCNRYKEEMMNKAVEKIQKW 534
Query: 677 KEKTEDINVTVSSKKKKLKR 696
E+T + K+++ R
Sbjct: 535 DEETFAKKIHNLQMKERVLR 554
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 69.2 bits (168), Expect = 5e-12
Identities = 46/298 (15%), Positives = 93/298 (31%), Gaps = 23/298 (7%)
Query: 917 EKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETD-RMIESGHFPELK 975
+ L L+ T + Q +++V+ + R+++ E
Sbjct: 236 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEES 295
Query: 976 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI 1035
I + + + + + ++L+ + K + L
Sbjct: 296 RICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQE 355
Query: 1036 KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQ 1095
K P+++ L++ E + RTL+F + + V L +
Sbjct: 356 KEPELIALSKDETNENPKLEEL-------VCILDDAYRYNPQTRTLLFAKTRALVSALKK 408
Query: 1096 LLTM------LKCSPLPLHAS------MNQRQRLKNLDRFRD-QNNSILLATDVAARGLD 1142
+ +K L M + LD F+ ++N +L+AT VA G+D
Sbjct: 409 CMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGID 468
Query: 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
I V+ Y I GR RA +++ E+ K E+ +
Sbjct: 469 IVQCNLVVLYEYSGNVTKMIQVRGR-GRAAG-SKCILVTSKTEVVENEKCNRYKEEMM 524
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 76.6 bits (187), Expect = 5e-14
Identities = 96/667 (14%), Positives = 186/667 (27%), Gaps = 121/667 (18%)
Query: 103 NKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMA-EWVKFNIPET 161
+ T ++ E + K T A+++ LE + +E+ + E
Sbjct: 177 DTTGYYRASELWDIREDNAKDVDSEMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEG 236
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 221
I + K Q + A+ + ++ A TGSGKT + IL + +N
Sbjct: 237 IGKPPPVYETKKARSYQIELAQPAINGKNALI-CAPTGSGKTF---VSILI-CEHHFQN- 290
Query: 222 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 281
K + LA + Q +N
Sbjct: 291 --------------------------------MPAGRKAKVVFLATKVPVYEQQKNVFKH 318
Query: 282 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 341
+ V + G + + + + I+V TP L LT L ++
Sbjct: 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQIL--VNSFEDGTLTSLSIFTLMI 376
Query: 342 IDETDRMIESG-------------------------------------------HFPELK 358
DE + H L
Sbjct: 377 FDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLC 436
Query: 359 NILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET----------------SQPRQ 402
+ LD ++ + Q + + PE+ L + +
Sbjct: 437 SYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYS 496
Query: 403 TFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITK 462
S +K K + + + K
Sbjct: 497 VDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556
Query: 463 TLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTE 522
++E + + + + P L + + K P+++ L++
Sbjct: 557 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDET----NEN 612
Query: 523 SKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM------LKCSPLPLHA 576
K+ + RTL+F + + V L + + +K L
Sbjct: 613 PKLEEL---VCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRG 669
Query: 577 S------MNQRQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629
M + LD F+ ++N +L+AT VA G+DI V+ Y I
Sbjct: 670 RRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMI 729
Query: 630 HRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAEADKEKTEDINVTVSS 689
GR RA +V +++ + + +EE N+ E+ + E+T +
Sbjct: 730 QVRGR-GRAAGSKCILVTSKTEVVENEKCNRYKEEMMNKAVEKIQKWDEETFAKKIHNLQ 788
Query: 690 KKKKLKR 696
K+++ R
Sbjct: 789 MKERVLR 795
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 65.0 bits (157), Expect = 2e-10
Identities = 43/244 (17%), Positives = 83/244 (34%), Gaps = 36/244 (14%)
Query: 970 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 1029
L+ D + ++E ++ + ++KN + Q + K + +P + L
Sbjct: 545 CTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIAL 604
Query: 1030 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 1089
++PK+ +L + + RTL+F + +
Sbjct: 605 SKDETNENPKLEELVCIL---------------------DDAYRYNPQTRTLLFAKTRAL 643
Query: 1090 VKRLTQLLTM------LKCSPLPLHAS------MNQRQRLKNLDRFRD-QNNSILLATDV 1136
V L + + +K L M + LD F+ ++N +L+AT V
Sbjct: 644 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV 703
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A G+DI V+ Y I GR RA +++ E+ K
Sbjct: 704 ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAG-SKCILVTSKTEVVENEKCNRYK 761
Query: 1197 EKKV 1200
E+ +
Sbjct: 762 EEMM 765
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 73.8 bits (180), Expect = 3e-13
Identities = 103/678 (15%), Positives = 201/678 (29%), Gaps = 118/678 (17%)
Query: 103 NKTEEIQSDEPSSKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQMA-EWVKFNIPET 161
+ T ++ E + K T A+++ LE + +E+ + E
Sbjct: 177 DTTGYYRASELWDIREDNAKDVDSEMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEG 236
Query: 162 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 221
I + K Q + A+ + ++ A TGSGKT + IL + +N
Sbjct: 237 IGKPPPVYETKKARSYQIELAQPAINGKNALI-CAPTGSGKTF---VSILI-CEHHFQN- 290
Query: 222 TEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD 281
K + LA + Q +N
Sbjct: 291 --------------------------------MPAGRKAKVVFLATKVPVYEQQKNVFKH 318
Query: 282 AGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLV 341
+ V + G + + + + I+V TP L LT L ++
Sbjct: 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQIL--VNSFEDGTLTSLSIFTLMI 376
Query: 342 IDETDRMI-ESGHFPELKNILDRVTMTETSQPRQTMIESGHFP----------------- 383
DE + + L++ + + P+ + +
Sbjct: 377 FDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLC 436
Query: 384 ELKNILDRVTMTETS-----------------QPRQTFVFSATLTHSLKNSLNLKKGQSK 426
+I T+ E + R F+A +++ + + L + +
Sbjct: 437 SYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAY 496
Query: 427 SKKVSKGDPSIKRLQD-----LLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY 481
+S+ Q+ ++ + +++ L +K ++ I +H K +
Sbjct: 497 VDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556
Query: 482 YFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKI-------GITKTLTESKILCKHDEKDS 534
+ + E+ + + SK + K
Sbjct: 557 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLE 616
Query: 535 YLYYFILQH-----PGRTLVFCNSISSVKRLTQLLTM------LKCSPLPLHAS------ 577
L + RTL+F + + V L + + +K L
Sbjct: 617 ELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTG 676
Query: 578 MNQRQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTA 636
M + LD F+ ++N +L+AT VA G+DI V+ Y I GR
Sbjct: 677 MTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-G 735
Query: 637 RANNEGLTVVLIESDEIPLKTKFNLQEEE----------NNEEEERAEADKEKTEDINVT 686
RA +++ E+ K N +EE +EE A+ V
Sbjct: 736 RAAG-SKCILVTSKTEVVENEKCNRYKEEMMNKAVEKIQKWDEETFAKKIHNLQMKERVL 794
Query: 687 VSSKKKKLKRKQNPSQVE 704
S++K++K K Q
Sbjct: 795 RDSRRKEIKPKVVEGQKN 812
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 63.8 bits (154), Expect = 4e-10
Identities = 47/282 (16%), Positives = 94/282 (33%), Gaps = 36/282 (12%)
Query: 970 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 1029
L+ D + ++E ++ + ++KN + Q + K + +P + L
Sbjct: 545 CTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIAL 604
Query: 1030 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 1089
++PK+ +L + + RTL+F + +
Sbjct: 605 SKDETNENPKLEELVCIL---------------------DDAYRYNPQTRTLLFAKTRAL 643
Query: 1090 VKRLTQLLTM------LKCSPLPLHAS------MNQRQRLKNLDRFRD-QNNSILLATDV 1136
V L + + +K L M + LD F+ ++N +L+AT V
Sbjct: 644 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV 703
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A G+DI V+ Y I GR RA +++ E+ K
Sbjct: 704 ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAG-SKCILVTSKTEVVENEKCNRYK 761
Query: 1197 EKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPD 1238
E+ ++ I + K+I + E + ++
Sbjct: 762 EEMMNKAVEKIQKWDEETFAKKIHNLQMKERVLRDSRRKEIK 803
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 9e-13
Identities = 65/476 (13%), Positives = 142/476 (29%), Gaps = 71/476 (14%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
+ A + Q + +A + G S ++ + + I++ TP L
Sbjct: 55 VVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILV 114
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMIESG-HFPELKNILDR------------VTMTE 368
+ + + L ++ DE ++ + + LD V +T
Sbjct: 115 NNLN--NGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTA 172
Query: 369 TSQPRQTMIESGHFPELKNILDR---------------------------VTMTETSQPR 401
+ + + + +
Sbjct: 173 SVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNT 232
Query: 402 QTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLN--IKSPKIVDLTEKIG 459
+ S + + K + ++ + K ++ + ++ + + K+ + + +K
Sbjct: 233 FKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEE 292
Query: 460 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKT 519
++ + H K + ++ + D TE+ +
Sbjct: 293 ESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRF 352
Query: 520 LTESKILCKHDEKDSYL------------YYFILQHPGRTLVFCNSISSVKRLTQLLTM- 566
+ + L K S + L+ +T++F + + V L + +
Sbjct: 353 EEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEEN 412
Query: 567 -----LKCSPL------PLHASMNQRQRLKNLDRFRDQNNS-ILLATDVAARGLDIPGIE 614
LK L M + L+ FR ++ IL+AT VA G+DI
Sbjct: 413 PALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECN 472
Query: 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEE 670
VI Y I GR RA + +L S ++ K K N+ +E+ E
Sbjct: 473 LVILYEYVGNVIKMIQTRGR-GRARD-SKCFLLTSSADVIEKEKANMIKEKIMNES 526
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 5e-09
Identities = 43/242 (17%), Positives = 87/242 (35%), Gaps = 36/242 (14%)
Query: 970 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRL 1029
+ L+ D + ++E +Q + H ++ + + + +++ + ++++
Sbjct: 303 YTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKV 362
Query: 1030 QDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISS 1089
+ ++PK+ DL + + L+ +T++F + +
Sbjct: 363 SRDPSNENPKLRDLYLVL---------------------QEEYHLKPETKTILFVKTRAL 401
Query: 1090 VKRLTQLLTM------LKCSPL------PLHASMNQRQRLKNLDRFRDQNNS-ILLATDV 1136
V L + + LK L M + L+ FR ++ IL+AT V
Sbjct: 402 VDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSV 461
Query: 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSL 1196
A G+DI VI Y I GR RA + +L S ++ K
Sbjct: 462 ADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRARD-SKCFLLTSSADVIEKEKANMIK 519
Query: 1197 EK 1198
EK
Sbjct: 520 EK 521
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 69.6 bits (169), Expect = 6e-12
Identities = 79/575 (13%), Positives = 171/575 (29%), Gaps = 97/575 (16%)
Query: 262 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW 321
+ A + Q ++ + +V + G + + + + I++ TP L
Sbjct: 64 VVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 123
Query: 322 EFIQLGHFHLTELYKINYLVIDETDRMI-------------------ESGHFPELKNILD 362
++ + L ++ DE SG P++ +
Sbjct: 124 NNLK--KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTA 181
Query: 363 RVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL---------THS 413
V + + + + + T+ + + V+ +
Sbjct: 182 SVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 241
Query: 414 LKNSLN--LKKGQSKSKKVSKGDPSIKRLQD------------LLNIKSPKIVDLTEKIG 459
K + ++ +S +K++ K ++ ++Q+ + K+ + + +K
Sbjct: 242 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE 301
Query: 460 ITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKT 519
++ + H K + + + ++D + D E+ +
Sbjct: 302 ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRF 361
Query: 520 LTESKILCKHDEKDSYLY------------YFILQHPGRTLVFCNSISSVKRLTQLLTM- 566
+ + L S + L T++F + + V L +
Sbjct: 362 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGN 421
Query: 567 -----LKCSPL------PLHASMNQRQRLKNLDRFRDQNNS-ILLATDVAARGLDIPGIE 614
LK L + M + LD F+ + IL+AT VA G+DI
Sbjct: 422 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 481
Query: 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQEEENNEEEERAE 674
VI Y I GR RA +L E+E+
Sbjct: 482 LVILYEYVGNVIKMIQTRGR-GRARG-SKCFLLT--------------SNAGVIEKEQIN 525
Query: 675 ADKEKTEDINVTVSSKKKKLKRKQNPSQVEVSELSANTNDPDDQVNKTEEIQ---SDEPH 731
KEK + R Q + E + + + ++E D+ +
Sbjct: 526 MYKEK---------MMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKEN 576
Query: 732 SKKLKQKKKKKQTYTSANKELLEVDTSNNEDMFVQ 766
K L +K K YT+ + + + + D F +
Sbjct: 577 KKLLCRKCKALACYTADVRVIEDCHYTVLGDAFKE 611
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 58.1 bits (139), Expect = 2e-08
Identities = 41/216 (18%), Positives = 72/216 (33%), Gaps = 26/216 (12%)
Query: 1000 THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGIT--KTLTESK 1057
+K++L+ K + + + D + L K ++ ++ K
Sbjct: 328 HARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 387
Query: 1058 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTM------LKCSPL------ 1105
IL + + L T++F + + V L + LK L
Sbjct: 388 ILQEE---------YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKT 438
Query: 1106 PLHASMNQRQRLKNLDRFRDQNNS-ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164
+ M + LD F+ + IL+AT VA G+DI VI Y I
Sbjct: 439 NQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQT 498
Query: 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200
GR RA +L + + ++ EK +
Sbjct: 499 RGR-GRARG-SKCFLLTSNAGVIEKEQINMYKEKMM 532
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 2e-10
Identities = 46/313 (14%), Positives = 82/313 (26%), Gaps = 93/313 (29%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK-QLRILNKCPHILVATPGRLW 938
L+L P+ + G Y ++ G + +R + + +T G+
Sbjct: 261 LVLNPSVAATLGF-------GAY----MSKAHGIDPNIRTGVRTITTGAPVTYSTYGKF- 308
Query: 939 EFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQ-PRQTFVFSA 997
+ ++ DE H + IL T+ + ++ V A
Sbjct: 309 -LAD----GGCSGGAYDIIICDE-------CHSTDSTTILGIGTVLDQAETAGARLVVLA 356
Query: 998 TLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 1057
T T P NI+ E
Sbjct: 357 TAT-----------------------PPGSVTVPHPNIEEV----------ALSNTGEIP 383
Query: 1058 ILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 1117
K ++ GR L+FC+S L L+ L + + + ++
Sbjct: 384 FYGKAIPIEAI-------RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIP 436
Query: 1118 KNLDRFRDQNNSILLATDVAARGL--DI-----PG--IEHVIHYHVPRTSEI-------- 1160
D ++ATD G D + + + + T I
Sbjct: 437 TIGDVV-------VVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQD 489
Query: 1161 ---YIHRSGRTAR 1170
R GRT R
Sbjct: 490 AVSRSQRRGRTGR 502
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 1e-06
Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 27/115 (23%)
Query: 543 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 602
GR L+FC+S L L+ L + + + ++ D ++ATD
Sbjct: 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIPTIGDVV-------VVATD 447
Query: 603 VAARGL--DI-----PG--IEHVIHYHVPRTSEI-----------YIHRSGRTAR 637
G D + + + + T I R GRT R
Sbjct: 448 ALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR 502
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Length = 1054 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 1e-09
Identities = 70/460 (15%), Positives = 152/460 (33%), Gaps = 93/460 (20%)
Query: 869 FVKKTRNKLYALILAPTRELAIQVQNHILD----AGKYTPVKVACVVGGMSTEKQLRILN 924
F+ + Y ++ PT L IQ I AG T + G + ++ +
Sbjct: 94 FLALKGKRCY--VIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQ 151
Query: 925 KCP--HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVT 982
I++ T L H EL +++ +D+ D ++++ KN+ D++
Sbjct: 152 NLRNFKIVITTTQFL-------SKHYRELGHFDFIFVDDVDAILKAS-----KNV-DKLL 198
Query: 983 M-----------TETSQPRQTFVF-SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQ 1030
+ + R + +AT K + +
Sbjct: 199 HLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKK---------------------AELFR 237
Query: 1031 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 1090
LLN + + + +DE S L + + +++ +
Sbjct: 238 QLLNFDIGSSRITVRNV------EDVAV---NDESISTLSSILEKLGTGGIIYARTGEEA 288
Query: 1091 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL--LAT--DVAARGLDIPG- 1145
+ + + L + + + ++F + L A RGLD+P
Sbjct: 289 EEIYESLKNK------FRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPER 342
Query: 1146 IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDF 1205
I + P + + + + L+ + ++ ++E+ +D
Sbjct: 343 IRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHID---- 394
Query: 1206 PIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTL---VLIES 1262
+ E + ++ K AK + E ++ ++ SGRT+R GLT L+E
Sbjct: 395 EVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLED 454
Query: 1263 DEIPLYIKMFNSLEKKVDLPDF---PIDESVLSLIKKRID 1299
D ++ ++ ++ L D IDE + + +D
Sbjct: 455 DS-----ELLSAFIERAKLYDIEFKSIDEVDFEKLSRELD 489
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Length = 523 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 3e-08
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 27/154 (17%)
Query: 494 EEIQDLLNIKSPKIVDLTEKIGITKTLTES--------KILCKHDEKDSYLYYFILQHPG 545
++I LL + P I I+ S ++ K L ++ + G
Sbjct: 190 QDIVRLLGLNDPLIQ-------IS-----SFDRPNIRYMLMEKFK-PLDQLMRYVQEQRG 236
Query: 546 RT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
++ +++CNS + V+ L S HA + R ++F+ + I++AT VA
Sbjct: 237 KSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVAT-VA 295
Query: 605 -ARGLDIPGIEHVIHYHVPRTSEIY---IHRSGR 634
G++ P + V+H+ +PR E Y R+GR
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR 329
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Length = 523 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 4e-08
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 1063 DEKDSYLYYFILQHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 1121
+ L ++ + G++ +++CNS + V+ L S HA + R +
Sbjct: 221 FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQE 280
Query: 1122 RFRDQNNSILLATDVA-ARGLDIPGIEHVIHYHVPRTSEIY---IHRSGR 1167
+F+ + I++AT VA G++ P + V+H+ +PR E Y R+GR
Sbjct: 281 KFQRDDLQIVVAT-VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR 329
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 1e-07
Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
Query: 522 ESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQ-LLTMLKCSPLPLHASMN 579
++ D + +L ++ H + LV C ++ +L Q L H M+
Sbjct: 480 DNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS 539
Query: 580 QRQRLKNLDRFRDQNNS--ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
+R + F +++ +LL +++ + G + H++ + +P ++ R GR R
Sbjct: 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDR 599
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 1e-07
Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
Query: 1055 ESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQ-LLTMLKCSPLPLHASMN 1112
++ D + +L ++ H + LV C ++ +L Q L H M+
Sbjct: 480 DNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS 539
Query: 1113 QRQRLKNLDRFRDQNNS--ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
+R + F +++ +LL +++ + G + H++ + +P ++ R GR R
Sbjct: 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDR 599
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 42/313 (13%), Positives = 92/313 (29%), Gaps = 72/313 (23%)
Query: 879 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI---------------- 922
LI+ PT LA Q + + + V G + K L +
Sbjct: 136 TLIVVPTLALAEQWKERLGI---FGEEYVGEFSGRIKELKPLTVSTYDSAYVNAEKLGNR 192
Query: 923 ----------------------LNKCPHI--LVATPGRLWEFIQLGHFHLTELYKINYLV 958
++ P L AT R ++ L E+ + V
Sbjct: 193 FMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTATFEREDGRHEI----LKEV--VGGKV 246
Query: 959 IDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKK 1018
+ + H + V + E + K+ + +
Sbjct: 247 FELFPDSLAGKHLAKYTIKRIFVPLAEDERVEY-----------------EKREKVYKQF 289
Query: 1019 VSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078
+ +++R +D I D + +I K L + +H
Sbjct: 290 LRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRK 349
Query: 1079 -RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 1137
+ ++F V R++++ + + ++ +R + L+ FR ++++ V
Sbjct: 350 DKIIIFTRHNELVYRISKVFLIPA-----ITHRTSREEREEILEGFRTGRFRAIVSSQVL 404
Query: 1138 ARGLDIPGIEHVI 1150
G+D+P +
Sbjct: 405 DEGIDVPDANVGV 417
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 3e-06
Identities = 36/214 (16%), Positives = 69/214 (32%), Gaps = 21/214 (9%)
Query: 449 PKIVDLTEKIGITKTLTESK---ILCKHDEKDSYLYYFILQHPGRTLCE------EIQDL 499
K+ +L K L + I E + Y + + L +D
Sbjct: 244 GKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDF 303
Query: 500 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVK 558
I D + +I K L + +H + ++F V
Sbjct: 304 NKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVY 363
Query: 559 RLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI- 617
R++++ + + ++ +R + L+ FR ++++ V G+D+P +
Sbjct: 364 RISKVFLIPA-----ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI 418
Query: 618 --HYHVPRTSEIYIHRSGRTARANNEGLTVVLIE 649
R YI R GR R + VL E
Sbjct: 419 MSGSGSARE---YIQRLGRILRPSKGKKEAVLYE 449
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 4e-07
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 24/118 (20%)
Query: 539 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598
+IL T F SI + + L S + L+ + + + + +
Sbjct: 172 WILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFI 227
Query: 599 LATDVAARGLDIPGIEHVI--------HYHVPRTSEIY-----------IHRSGRTAR 637
LATD+A G ++ +E V+ R GR R
Sbjct: 228 LATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGR 284
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 4e-07
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 24/118 (20%)
Query: 1072 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+IL T F SI + + L S + L+ + + + + +
Sbjct: 172 WILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFI 227
Query: 1132 LATDVAARGLDIPGIEHVI--------HYHVPRTSEIY-----------IHRSGRTAR 1170
LATD+A G ++ +E V+ R GR R
Sbjct: 228 LATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGR 284
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 | Back alignment and structure |
|---|
Score = 50.7 bits (120), Expect = 3e-06
Identities = 39/322 (12%), Positives = 93/322 (28%), Gaps = 15/322 (4%)
Query: 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939
LI+ PT L Q+ + +D ++ + + GG S + + + T + +
Sbjct: 161 LIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPK 220
Query: 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPEL-KNILDRVTMTETSQPRQTFVFSAT 998
+ ++ DE + + R
Sbjct: 221 EWF---------SQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSLRDGKANIMQ 271
Query: 999 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 1058
+ + I + + + + +
Sbjct: 272 YVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRY---PDEFTTKLKGKTYQEEIKIITG 328
Query: 1059 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 1118
L K ++ + L + Q V +S K + L+ + ++ R
Sbjct: 329 LSKRNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNI 388
Query: 1119 NLDRFRDQNNSILLAT-DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 1177
+ I++A+ V + G+ + + HV+ H ++ I + GR R +
Sbjct: 389 MKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTI 448
Query: 1178 LVLIE-SDEIPLYIKMFNSLEK 1198
+ + D+ + K N+ +K
Sbjct: 449 ATVWDLIDDAGVKPKSANTKKK 470
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 3e-05
Identities = 45/300 (15%), Positives = 96/300 (32%), Gaps = 39/300 (13%)
Query: 374 QTMIESGHFPELKNILDRVTMTETSQ--PRQTFVFSATLTHSLKNSLNLKKGQSKSKKVS 431
I G + K D + T Q +Q + + + + +L G+S S +S
Sbjct: 188 IKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIIS 247
Query: 432 KGDPSIKRLQ--------DLLNIKSPKIVDLTEKIGITKTLTESKILCK---HDEKDSYL 480
+ + + ++ + K T L E + + + Y
Sbjct: 248 GLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYP 307
Query: 481 YYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 540
F + G+T EEI+ + + K ++ + L +
Sbjct: 308 DEFTTKLKGKTYQEEIKIITGLS------------------------KRNKWIAKLAIKL 343
Query: 541 LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600
Q V +S K + L+ + ++ R + I++A
Sbjct: 344 AQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVA 403
Query: 601 T-DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIE-SDEIPLKTK 658
+ V + G+ + + HV+ H ++ I + GR R + + + D+ +K K
Sbjct: 404 SYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPK 463
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Length = 591 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 528 KHDEKDSYLYYFIL-QHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 585
++ + I ++ G++ +++C S +++T L L HA++ +
Sbjct: 249 NTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTT 308
Query: 586 NLDRFRDQNNSILLATDVA-ARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634
++ +++AT VA G+D P + VIH+ + ++ E Y SGR
Sbjct: 309 VHRKWSANEIQVVVAT-VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGR 357
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Length = 591 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 1061 KHDEKDSYLYYFIL-QHPGRT-LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 1118
++ + I ++ G++ +++C S +++T L L HA++ +
Sbjct: 249 NTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTT 308
Query: 1119 NLDRFRDQNNSILLATDVA-ARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 1167
++ +++AT VA G+D P + VIH+ + ++ E Y SGR
Sbjct: 309 VHRKWSANEIQVVVAT-VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGR 357
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+P +I + ++G K Q+ + LL ++ + TGSGKTL + I+
Sbjct: 13 LKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGII 68
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
+P +I + ++G K Q+ + LL ++ + TGSGKTL + I+
Sbjct: 13 LKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGII 68
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 6e-05
Identities = 74/523 (14%), Positives = 150/523 (28%), Gaps = 139/523 (26%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
+ E I L ++G ++ Q+ + S +L K+ + + T SGKTL I ++
Sbjct: 6 LRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMV---- 61
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
+ K A+ + P + LA +
Sbjct: 62 -----------------------------------HRILTQGGK--AVYIVPLKALAEEK 84
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
D K ++VA G ++ + I++AT + ++ + +
Sbjct: 85 FQEFQDWEKIG-LRVAMATGDYDSKDEWL---GKYDIIIATAEK-FDSLLRHGSSWIKD- 138
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVF-SATLTHSLKNSLNLKK 1011
+ LV DE + L+ IL + + + SAT+
Sbjct: 139 -VKILVADEIHLIGSRDRGATLEVILAHM------LGKAQIIGLSATI------------ 179
Query: 1012 GQSKSKKVSKGDPSIKRLQDLLNIKS------PKIVDLTEKIGITKTLTESKILCKHDEK 1065
+ + L + LN + P V L + +T
Sbjct: 180 ------------GNPEELAEWLNAELIVSDWRP--VKLRRGVFYQGFVTWEDGSIDRFSS 225
Query: 1066 DSYLYYFILQHPGRTLVFCNS----ISSVKRLTQLLTMLKCSPLPL-------------- 1107
L Y ++ L+F N L++ + L P
Sbjct: 226 WEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPT 285
Query: 1108 ---------------HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPG---IEHV 1149
HA + + +R+ + FR ++AT + G++ P I
Sbjct: 286 NEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRD 345
Query: 1150 IHYHVPRTSEIY--------IHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
I + E + R+GR + + G +++ SD+ + +
Sbjct: 346 IWRYSDFGMERIPIIEVHQMLGRAGR-PKYDEVGEGIIVSTSDDPR------EVMNHYIF 398
Query: 1202 LPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRS 1244
+ S LS ++ ++ +
Sbjct: 399 GKPEKL-FSQLSNESNLRSQVLALIATFGYSTVEEILKFISNT 440
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
+ E I L ++G ++ Q+ + S +L K+ + + T SGKTL I ++
Sbjct: 6 LRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMV 61
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 8e-05
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 540 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 599
I + G+T+ F SI + + L + L + K D ++
Sbjct: 351 ITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWD----FVV 406
Query: 600 ATDVAARGLDIPGIEHVI 617
TD++ G + VI
Sbjct: 407 TTDISEMGANF-RAGRVI 423
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 8e-05
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
I + G+T+ F SI + + L + L + K D ++
Sbjct: 351 ITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWD----FVV 406
Query: 1133 ATDVAARGLDIPGIEHVI 1150
TD++ G + VI
Sbjct: 407 TTDISEMGANF-RAGRVI 423
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 54/395 (13%), Positives = 97/395 (24%), Gaps = 131/395 (33%)
Query: 798 VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 857
V ++ + G+GKT I+ + V E
Sbjct: 11 VDEDIFRKKRLTIMDLHPGAGKT--------KRILPSI-------------------VRE 43
Query: 858 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTE 917
L +T LILAPTR +A +++ + G P++
Sbjct: 44 ALLRR--------LRT------LILAPTRVVAAEMEEAL--RGL--PIRYQTPAVKSDHT 85
Query: 918 KQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNI 977
+ + + + + N +V+DE HF + ++
Sbjct: 86 GREI-------VDLMCHATFTTRLLSST----RVPNYNLIVMDE-------AHFTDPCSV 127
Query: 978 LDRVTMTETS--QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNI 1035
R ++ +AT
Sbjct: 128 AARGYISTRVEMGEAAAIFMTATPP--------------------------GSTDPFPQS 161
Query: 1036 KSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQ 1095
SP I D+ +I T + + G+T+ F SI + +
Sbjct: 162 NSP-IEDIEREIPERSWNTGFDWIT--------------DYQGKTVWFVPSIKAGNDIAN 206
Query: 1096 LLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI----- 1150
L + L + K D ++ TD++ G + VI
Sbjct: 207 CLRKSGKRVIQLSRKTFDTEYPKTKLTDWD----FVVTTDISEMGANF-RAGRVIDPRRC 261
Query: 1151 -----HYHVPRTSEIY----------IHRSGRTAR 1170
P + R GR R
Sbjct: 262 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGR 296
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 8e-04
Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 25/118 (21%)
Query: 540 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 599
I + G+T+ F SI + + L + L + K D ++
Sbjct: 184 ITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWD----FVV 239
Query: 600 ATDVAARGLDIPGIEHVI----------HYHVPRTSEIY----------IHRSGRTAR 637
TD++ G + VI P + R GR R
Sbjct: 240 TTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGR 296
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 7e-04
Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 22/115 (19%)
Query: 540 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 599
I + GRT+ F +SI + L L L+ + + K D ++
Sbjct: 167 ITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWD----FVI 222
Query: 600 ATDVAARGLDIPGIEHVI-------HYHVPRTSEIY----------IHRSGRTAR 637
TD++ G + + VI + + R GR R
Sbjct: 223 TTDISEMGANF-KADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGR 276
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 7e-04
Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 22/115 (19%)
Query: 1073 ILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 1132
I + GRT+ F +SI + L L L+ + + K D ++
Sbjct: 167 ITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWD----FVI 222
Query: 1133 ATDVAARGLDIPGIEHVI-------HYHVPRTSEIY----------IHRSGRTAR 1170
TD++ G + + VI + + R GR R
Sbjct: 223 TTDISEMGANF-KADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGR 276
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1493 | |||
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 100.0 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 100.0 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 100.0 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 100.0 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 100.0 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 100.0 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 100.0 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 100.0 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 100.0 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 100.0 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 100.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 100.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 100.0 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 100.0 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 100.0 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 100.0 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 100.0 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 100.0 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 100.0 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 100.0 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 100.0 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 100.0 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 100.0 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 100.0 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 100.0 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 100.0 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 100.0 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 100.0 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 100.0 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 100.0 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 100.0 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 100.0 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 100.0 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 100.0 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 100.0 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.97 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.97 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.97 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.97 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.97 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.97 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.97 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.97 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.97 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.97 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.96 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.96 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.96 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.96 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.96 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.96 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.96 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.96 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.96 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.96 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.96 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.96 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.96 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.96 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.96 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.96 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.96 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.96 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.96 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.96 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.96 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.95 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.95 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.95 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.95 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.95 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.95 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.95 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.95 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.95 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.94 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.93 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.92 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.92 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.92 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.92 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.92 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.91 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.91 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.91 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.91 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.91 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.9 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.9 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.9 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.9 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.9 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.9 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.89 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.89 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.89 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.89 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.88 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.88 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.88 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.88 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.87 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.77 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.74 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.83 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.81 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.81 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.8 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.77 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.77 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.75 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.75 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.73 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.73 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.65 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.64 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.6 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.59 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.59 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.58 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 98.27 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 98.15 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 96.94 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 96.85 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 96.79 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 96.75 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 96.72 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.62 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 96.59 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.58 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 96.49 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 96.48 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 96.29 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 96.27 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 95.63 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 94.9 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 94.51 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 94.16 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 93.75 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 93.01 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 92.91 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 92.89 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 92.51 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 91.72 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 91.62 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 91.49 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 91.1 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 91.0 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 90.66 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 90.53 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 90.4 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 90.4 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 90.26 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 89.74 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 89.71 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 89.46 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 89.28 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 89.11 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 88.45 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 88.2 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 87.97 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 87.29 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 87.22 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 87.17 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 87.09 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 86.73 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 86.56 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 86.31 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 85.68 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 85.63 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 85.37 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 84.53 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 82.75 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 82.72 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 82.72 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 82.33 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 82.0 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 81.82 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 81.63 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 81.5 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 80.6 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 80.16 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 80.09 |
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-77 Score=822.33 Aligned_cols=819 Identities=18% Similarity=0.206 Sum_probs=521.9
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
||++++++|++++|.++..++|+++|||||||||++|.+++++.+.+......
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~--------------------------- 128 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDG--------------------------- 128 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTS---------------------------
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccc---------------------------
Confidence 89999999999999888889999999999999999999999999875432111
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCc
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~ 329 (1493)
.....+.++||++||++||.|+++.|.+.+...|++|..++|++..... ....++|+||||+++..++. ...
T Consensus 129 ----~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr-~~~ 200 (1724)
T 4f92_B 129 ----TINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITR-KGG 200 (1724)
T ss_dssp ----SCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTT-SST
T ss_pred ----cccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHc-CCc
Confidence 1123567899999999999999999999888899999999999765432 12457999999999744443 333
Q ss_pred cccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeec
Q psy16310 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409 (1493)
Q Consensus 330 ~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SAT 409 (1493)
....+.++++|||||+|.+ +..++..++.++.++... ....+.+.|+|++|||
T Consensus 201 ~~~~l~~v~~vIiDEvH~l-~d~RG~~lE~~l~rl~~~--------------------------~~~~~~~~riI~LSAT 253 (1724)
T 4f92_B 201 ERTYTQLVRLIILDEIHLL-HDDRGPVLEALVARAIRN--------------------------IEMTQEDVRLIGLSAT 253 (1724)
T ss_dssp THHHHTTEEEEEETTGGGG-GSTTHHHHHHHHHHHHHH--------------------------HHHHTCCCEEEEEECS
T ss_pred cchhhcCcCEEEEecchhc-CCccHHHHHHHHHHHHHH--------------------------HHhCCCCCcEEEEecc
Confidence 3334678999999999955 557888888888765321 0011456799999999
Q ss_pred cchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcc-cchhhhhccccccchhhhhhccCCcchhhHHHHhcCC
Q psy16310 410 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKI-VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP 488 (1493)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (1493)
+|+.- .+.+|+....... ..+...++ +..+.+..+.....
T Consensus 254 l~N~~------------------------dvA~wL~~~~~~~~~~~~~~~R-PvpL~~~~~~~~~~-------------- 294 (1724)
T 4f92_B 254 LPNYE------------------------DVATFLRVDPAKGLFYFDNSFR-PVPLEQTYVGITEK-------------- 294 (1724)
T ss_dssp CTTHH------------------------HHHHHTTCCHHHHEEECCGGGC-SSCEEEECCEECCC--------------
T ss_pred cCCHH------------------------HHHHHhCCCCCCCeEEECCCCc-cCccEEEEeccCCc--------------
Confidence 98521 1222322110000 00000000 00000000000000
Q ss_pred CcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC--CCcEEEEecchhhHHHHHHHHHh
Q psy16310 489 GRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTM 566 (1493)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~IIF~~s~~~a~~L~~~L~~ 566 (1493)
...... ......+...+... .+++||||+||..|+.++..|..
T Consensus 295 --~~~~~~---------------------------------~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~ 339 (1724)
T 4f92_B 295 --KAIKRF---------------------------------QIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRD 339 (1724)
T ss_dssp --CHHHHH---------------------------------HHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHH
T ss_pred --chhhhh---------------------------------HHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHH
Confidence 000000 00001122222222 46899999999999988887742
Q ss_pred -------------------------------------cCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCC
Q psy16310 567 -------------------------------------LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLD 609 (1493)
Q Consensus 567 -------------------------------------~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlD 609 (1493)
...+++.|||+|++.+|..+.+.|++|.++|||||+++++|||
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVN 419 (1724)
T 4f92_B 340 MCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVN 419 (1724)
T ss_dssp HHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSC
T ss_pred HHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCC
Confidence 1345788999999999999999999999999999999999999
Q ss_pred CCCCcEEEE----ecC------CCChHHHHHHHhccccCCC--CCeEEEEecCCcchhhhhhhhhhccchHH-------H
Q psy16310 610 IPGIEHVIH----YHV------PRTSEIYIHRSGRTARANN--EGLTVVLIESDEIPLKTKFNLQEEENNEE-------E 670 (1493)
Q Consensus 610 ip~v~~VI~----yd~------P~s~~~yiQR~GRagR~g~--~G~~i~l~~~~e~~~~~~l~~~~~~~~e~-------~ 670 (1493)
+|++++||. ||. |.++.+|+||+|||||.|. .|.++++.++++...+..+.....+.+.. -
T Consensus 420 lPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~ 499 (1724)
T 4f92_B 420 LPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM 499 (1724)
T ss_dssp CCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHH
T ss_pred CCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHH
Confidence 999999995 553 5689999999999999875 69999999999988777664433221100 0
Q ss_pred HHHHhh------------------------h------------c---ccccch-hhhhhhhhhhhccC-----CCC-ccc
Q psy16310 671 ERAEAD------------------------K------------E---KTEDIN-VTVSSKKKKLKRKQ-----NPS-QVE 704 (1493)
Q Consensus 671 e~~~~~------------------------~------------~---~~e~~~-~~vss~k~k~kr~~-----~~s-~~e 704 (1493)
...+.. . . ..+... .-+...-..+.+.. ... ...
T Consensus 500 L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~ 579 (1724)
T 4f92_B 500 LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQ 579 (1724)
T ss_dssp HHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEE
T ss_pred HHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHHHHHHCCCeeeecCCCccc
Confidence 000000 0 0 000000 00000000000000 000 000
Q ss_pred c----------------------------------------cccccCCCCCCc--------------ccccccccc----
Q psy16310 705 V----------------------------------------SELSANTNDPDD--------------QVNKTEEIQ---- 726 (1493)
Q Consensus 705 ~----------------------------------------~e~~~~~~~~~~--------------~~~~~~~~~---- 726 (1493)
. .+...-....++ .....++..
T Consensus 580 ~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~Kv~ 659 (1724)
T 4f92_B 580 VTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKIN 659 (1724)
T ss_dssp ECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGGHHHHHHHHHHSSSCCCSCCSSHHHHHH
T ss_pred cchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcCHHHHHHHHHHHhcCCCCcCCCCCChHHHHH
Confidence 0 000000000000 000000000
Q ss_pred ---------cCCcch----------------------------------------hh----------------------h
Q psy16310 727 ---------SDEPHS----------------------------------------KK----------------------L 735 (1493)
Q Consensus 727 ---------~~~~~~----------------------------------------~~----------------------~ 735 (1493)
...+.. +. .
T Consensus 660 ~Llq~~i~~~~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~~~~~~~~~~l~l~k~i~~~~w~~~~~L~q~~~i~~~~~ 739 (1724)
T 4f92_B 660 VLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV 739 (1724)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTSCTTSCGGGGSTTSCHHHH
T ss_pred HHHHHHHcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCCCCCceecCCCCCHHHH
Confidence 000000 00 0
Q ss_pred Hhhhhhcccchh---h--------------------------------c---------------------c---------
Q psy16310 736 KQKKKKKQTYTS---A--------------------------------N---------------------K--------- 750 (1493)
Q Consensus 736 ~~~~~~~~~~~~---~--------------------------------~---------------------~--------- 750 (1493)
++..+..-+... . + .
T Consensus 740 ~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~~~~~~~~~p~~~~~~~~~~~~~~~~~w~~~~h~~~~~ 819 (1724)
T 4f92_B 740 KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEA 819 (1724)
T ss_dssp HHHHTSSCCGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCCEEEEEEEEESSSSEEEEEEEEEECSCCCTTTTTTEEE
T ss_pred HHHHhcCCCHHHHHhCCHHHHHHHHCCchHHHHHHHHHHHCCCceEEEEEEecCCceEEEEEEEeeccccchhhcCCcee
Confidence 000000000000 0 0 0
Q ss_pred -----------------------c----------cccccCCCcchh-------------------------------hhh
Q psy16310 751 -----------------------E----------LLEVDTSNNEDM-------------------------------FVQ 766 (1493)
Q Consensus 751 -----------------------~----------~~~~~~~~~~~~-------------------------------~~~ 766 (1493)
. .++...+-++.. +.+
T Consensus 820 ~~~~v~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~i~~~sd~w~~~~~~~~~~~~~~~~p~~~~~~t~ 899 (1724)
T 4f92_B 820 FWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTE 899 (1724)
T ss_dssp EEEEEECTTSCBEEEEEEEEEEGGGTTSCEEEEEEEECCSSCCSEEEEEEEESSSTTCEEEEEEECTTCCCCCCCCCCCC
T ss_pred EEEEEEecCCCeEEEEEEEEeeeeccCCceEEEEEEECCCCCCCeEEEEEEEccccCCCceeeeccccccCCCCCCCCCc
Confidence 0 000000000000 000
Q ss_pred cccccc---CCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCccc
Q psy16310 767 MAEWVK---FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 843 (1493)
Q Consensus 767 ~~~f~~---l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~ 843 (1493)
+..+.. -.|.+...++++..+|.+++|+|.++|+.++..++|++++||||||||++|.+||++.+..
T Consensus 900 lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~---------- 969 (1724)
T 4f92_B 900 LLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ---------- 969 (1724)
T ss_dssp CCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH----------
T ss_pred cccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh----------
Confidence 000000 1355677888999999999999999999888888999999999999999999999998854
Q ss_pred CCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHH-hhCCCCcEEEEEEcCCCHHHHHHH
Q psy16310 844 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILD-AGKYTPVKVACVVGGMSTEKQLRI 922 (1493)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~-~~~~~~~~v~~~~gg~~~~~~~~~ 922 (1493)
..+.++||++||++||.|+++.|.+ ++...+++|..++|+.......
T Consensus 970 ------------------------------~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~-- 1017 (1724)
T 4f92_B 970 ------------------------------SSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKL-- 1017 (1724)
T ss_dssp ------------------------------CTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHH--
T ss_pred ------------------------------CCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhh--
Confidence 2334699999999999999999976 5566899999999986544332
Q ss_pred hcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcc--cCCCCCceEEEEecccc
Q psy16310 923 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM--TETSQPRQTFVFSATLT 1000 (1493)
Q Consensus 923 l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~--~~~~~~~q~ll~SATl~ 1000 (1493)
+ ..++|+|||||++..++++. .....+.++++||+||+|.|.+ .++..+..++.++.. ...+.+.|++++|||++
T Consensus 1018 ~-~~~~IiV~TPEkld~llr~~-~~~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~ 1094 (1724)
T 4f92_B 1018 L-GKGNIIISTPEKWDILSRRW-KQRKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLS 1094 (1724)
T ss_dssp H-HHCSEEEECHHHHHHHHTTT-TTCHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBT
T ss_pred c-CCCCEEEECHHHHHHHHhCc-ccccccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCC
Confidence 2 34699999999986666543 3334577899999999998766 577778777776642 23456789999999998
Q ss_pred cchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccch-------hhHHHHHH
Q psy16310 1001 HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEK-------DSYLYYFI 1073 (1493)
Q Consensus 1001 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-------~~~l~~~l 1073 (1493)
+.. .+..+++......+.+.... .+..+............ ...+...+
T Consensus 1095 N~~------------------------dla~WL~~~~~~~~~~~~~~-RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i 1149 (1724)
T 4f92_B 1095 NAK------------------------DVAHWLGCSATSTFNFHPNV-RPVPLELHIQGFNISHTQTRLLSMAKPVYHAI 1149 (1724)
T ss_dssp THH------------------------HHHHHHTCCSTTEEECCGGG-CSSCEEEEEEEECCCSHHHHHHTTHHHHHHHH
T ss_pred CHH------------------------HHHHHhCCCCCCeEEeCCCC-CCCCeEEEEEeccCCCchhhhhhhcchHHHHH
Confidence 532 12222222222222222111 11122222211111111 11122222
Q ss_pred H--hCCCcEEEEecchhhHHHHHHHHHhc----------------------------------CCCccccccCCCHHHHH
Q psy16310 1074 L--QHPGRTLVFCNSISSVKRLTQLLTML----------------------------------KCSPLPLHASMNQRQRL 1117 (1493)
Q Consensus 1074 ~--~~~~~~IVF~~s~~~~~~l~~~L~~~----------------------------------~~~~~~lhg~m~~~~R~ 1117 (1493)
. ...+++||||+|+..|+.++..|... ..+++.|||+|++.+|.
T Consensus 1150 ~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~ 1229 (1724)
T 4f92_B 1150 TKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERR 1229 (1724)
T ss_dssp HHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHH
T ss_pred HHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHH
Confidence 2 23679999999999999888766321 24578899999999999
Q ss_pred HHHHHHhcCCCCeEEeehhhhccccCCCccEEEE----e------cCCCChhHHHHHHhccCCCCC--CCeEEEEecCCC
Q psy16310 1118 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH----Y------HVPRTSEIYIHRSGRTARANN--EGLTLVLIESDE 1185 (1493)
Q Consensus 1118 ~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~----~------d~p~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~e 1185 (1493)
.+++.|++|.++|||||+++++|||+|++.+||. | ..|.+..+|+||+|||||+|. .|.|++++.+.+
T Consensus 1230 ~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~ 1309 (1724)
T 4f92_B 1230 LVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSK 1309 (1724)
T ss_dssp HHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGG
T ss_pred HHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchH
Confidence 9999999999999999999999999999999993 3 346789999999999999987 799999999999
Q ss_pred HHHHHHHHH
Q psy16310 1186 IPLYIKMFN 1194 (1493)
Q Consensus 1186 ~~~~~~~~~ 1194 (1493)
...+.+++.
T Consensus 1310 ~~~~~~ll~ 1318 (1724)
T 4f92_B 1310 KDFFKKFLY 1318 (1724)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 888887753
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-55 Score=537.03 Aligned_cols=369 Identities=29% Similarity=0.470 Sum_probs=318.6
Q ss_pred hhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCccc
Q psy16310 764 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 843 (1493)
Q Consensus 764 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~ 843 (1493)
+.++.+|++++|++.++++|..+||.+|||+|.++||. +..|+|++++||||||||++|++|++++++.....
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~-i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~------ 124 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPV-ISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE------ 124 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC------
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc------
Confidence 34577899999999999999999999999999999995 55789999999999999999999999988653210
Q ss_pred CCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHh
Q psy16310 844 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 923 (1493)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l 923 (1493)
....++++|||+|||+||.|+++.+++++...++++.+++||.....+...+
T Consensus 125 ----------------------------~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l 176 (434)
T 2db3_A 125 ----------------------------LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI 176 (434)
T ss_dssp ----------------------------CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH
T ss_pred ----------------------------cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh
Confidence 1234578999999999999999999999988899999999999999998888
Q ss_pred cCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 924 ~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..+++|+|+|||+|++++.++.. .+.++++|||||||+|++++|...+..++..+.. ...+|+++||||++..+
T Consensus 177 ~~~~~Ivv~Tp~~l~~~l~~~~~---~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~---~~~~q~l~~SAT~~~~~ 250 (434)
T 2db3_A 177 TRGCHVVIATPGRLLDFVDRTFI---TFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTM---RPEHQTLMFSATFPEEI 250 (434)
T ss_dssp TTCCSEEEECHHHHHHHHHTTSC---CCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTS---CSSCEEEEEESCCCHHH
T ss_pred hcCCCEEEEChHHHHHHHHhCCc---ccccCCeEEEccHhhhhccCcHHHHHHHHHhcCC---CCCceEEEEeccCCHHH
Confidence 88999999999999999987653 3668899999999999999999999999887632 36789999999999877
Q ss_pred HhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEE
Q psy16310 1004 KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 1083 (1493)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF 1083 (1493)
....... +..+..+.+.........+.+.+..+....+...+..++.....++|||
T Consensus 251 ~~~~~~~------------------------l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lVF 306 (434)
T 2db3_A 251 QRMAGEF------------------------LKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVF 306 (434)
T ss_dssp HHHHHTT------------------------CSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHCCTTEEEE
T ss_pred HHHHHHh------------------------ccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhCCCCEEEE
Confidence 6554221 1223333333333345566777777888889999999998888889999
Q ss_pred ecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHH
Q psy16310 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163 (1493)
Q Consensus 1084 ~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiq 1163 (1493)
|+++..|+.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+|++||+||+|.+..+|+|
T Consensus 307 ~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~q 386 (434)
T 2db3_A 307 VETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVH 386 (434)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHH
T ss_pred EeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCCeEEEEecCC-CHHHHHHHHHhcc
Q psy16310 1164 RSGRTARANNEGLTLVLIESD-EIPLYIKMFNSLE 1197 (1493)
Q Consensus 1164 r~GR~gR~g~~G~~i~l~~~~-e~~~~~~~~~~~~ 1197 (1493)
|+|||||+|+.|.|++|+++. +......+.+.+.
T Consensus 387 riGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~ 421 (434)
T 2db3_A 387 RIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILE 421 (434)
T ss_dssp HHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHH
T ss_pred HhcccccCCCCCEEEEEEeccccHHHHHHHHHHHH
Confidence 999999999999999999965 5555555555544
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-53 Score=517.28 Aligned_cols=363 Identities=29% Similarity=0.471 Sum_probs=300.5
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCC
Q psy16310 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 227 (1493)
Q Consensus 148 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 227 (1493)
.++.+|++++|++.++++|.++||..|||+|.++|| .+..|+|++++||||||||++|++|+++++......
T Consensus 53 ~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~-~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~------- 124 (434)
T 2db3_A 53 QPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIP-VISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE------- 124 (434)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-------
T ss_pred CCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHH-HHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-------
Confidence 356789999999999999999999999999999999 556889999999999999999999999998753211
Q ss_pred CccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc
Q psy16310 228 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 307 (1493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~ 307 (1493)
....++++|||+|||+||.|+++.+..++...++++.+++||.....+...+.
T Consensus 125 ---------------------------~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~ 177 (434)
T 2db3_A 125 ---------------------------LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT 177 (434)
T ss_dssp ---------------------------CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHT
T ss_pred ---------------------------cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhh
Confidence 11345789999999999999999999999888899999999999998888888
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
.+++|+|+||++|++++.+.... +.++++|||||||+|++++|.+.+..++..+..
T Consensus 178 ~~~~Ivv~Tp~~l~~~l~~~~~~---l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~--------------------- 233 (434)
T 2db3_A 178 RGCHVVIATPGRLLDFVDRTFIT---FEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTM--------------------- 233 (434)
T ss_dssp TCCSEEEECHHHHHHHHHTTSCC---CTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTS---------------------
T ss_pred cCCCEEEEChHHHHHHHHhCCcc---cccCCeEEEccHhhhhccCcHHHHHHHHHhcCC---------------------
Confidence 89999999999999999876543 558999999999999999999999999876521
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 467 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1493)
...+|+++||||++..+..+...... .+.......
T Consensus 234 ----------~~~~q~l~~SAT~~~~~~~~~~~~l~------------------------~~~~i~~~~----------- 268 (434)
T 2db3_A 234 ----------RPEHQTLMFSATFPEEIQRMAGEFLK------------------------NYVFVAIGI----------- 268 (434)
T ss_dssp ----------CSSCEEEEEESCCCHHHHHHHHTTCS------------------------SCEEEEESS-----------
T ss_pred ----------CCCceEEEEeccCCHHHHHHHHHhcc------------------------CCEEEEecc-----------
Confidence 34579999999999876654421110 000000000
Q ss_pred hhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcE
Q psy16310 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRT 547 (1493)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 547 (1493)
..............+....+...|..++.....++
T Consensus 269 ---------------------------------------------~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~ 303 (434)
T 2db3_A 269 ---------------------------------------------VGGACSDVKQTIYEVNKYAKRSKLIEILSEQADGT 303 (434)
T ss_dssp ---------------------------------------------TTCCCTTEEEEEEECCGGGHHHHHHHHHHHCCTTE
T ss_pred ---------------------------------------------ccccccccceEEEEeCcHHHHHHHHHHHHhCCCCE
Confidence 00000111122233344567777888888887789
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||++++||||+|+|++||+||+|.++.+
T Consensus 304 lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~ 383 (434)
T 2db3_A 304 IVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDD 383 (434)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHH
T ss_pred EEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCC-cchhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESD-EIPLKTKF 659 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~-e~~~~~~l 659 (1493)
|+||+|||||+|+.|.|++|++++ +......+
T Consensus 384 y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l 416 (434)
T 2db3_A 384 YVHRIGRTGRVGNNGRATSFFDPEKDRAIAADL 416 (434)
T ss_dssp HHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHH
T ss_pred HHHHhcccccCCCCCEEEEEEeccccHHHHHHH
Confidence 999999999999999999999965 44444433
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-50 Score=497.22 Aligned_cols=385 Identities=30% Similarity=0.478 Sum_probs=313.5
Q ss_pred hhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCccc
Q psy16310 764 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 843 (1493)
Q Consensus 764 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~ 843 (1493)
+.++.+|+++++++.++++|...||..|||+|.++|| .+..++|++++||||||||++|++|+++.+.......
T Consensus 11 p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~-~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~----- 84 (417)
T 2i4i_A 11 PPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIP-IIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGE----- 84 (417)
T ss_dssp CCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCH-----
T ss_pred CcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccc-----
Confidence 3456789999999999999999999999999999999 4557899999999999999999999999886532100
Q ss_pred CCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHh
Q psy16310 844 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 923 (1493)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l 923 (1493)
........ ........++++|||+||++||.|+++.++.++...++++..++||.....+...+
T Consensus 85 -----------~~~~~~~~-----~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 148 (417)
T 2i4i_A 85 -----------ALRAMKEN-----GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL 148 (417)
T ss_dssp -----------HHHHHHHC-----BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH
T ss_pred -----------hhhccccc-----cccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh
Confidence 00000000 00011223468999999999999999999999988899999999999999888888
Q ss_pred cCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 924 ~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..+++|+|+||++|.+++..+.. .+.++++|||||||++++++|...+..++...... ....+|++++|||++..+
T Consensus 149 ~~~~~I~v~Tp~~l~~~l~~~~~---~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~-~~~~~~~i~~SAT~~~~~ 224 (417)
T 2i4i_A 149 ERGCHLLVATPGRLVDMMERGKI---GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMP-PKGVRHTMMFSATFPKEI 224 (417)
T ss_dssp TTCCSEEEECHHHHHHHHHTTSB---CCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCC-CBTTBEEEEEESCCCHHH
T ss_pred hCCCCEEEEChHHHHHHHHcCCc---ChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCC-CcCCcEEEEEEEeCCHHH
Confidence 88899999999999999987653 35678999999999999999999998888754221 123689999999999776
Q ss_pred HhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC--CCcEE
Q psy16310 1004 KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH--PGRTL 1081 (1493)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~I 1081 (1493)
...+... +..+..+...........+.+.+..+....+...+..++... .+++|
T Consensus 225 ~~~~~~~------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l 280 (417)
T 2i4i_A 225 QMLARDF------------------------LDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTL 280 (417)
T ss_dssp HHHHHHH------------------------CSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEE
T ss_pred HHHHHHH------------------------cCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEE
Confidence 5544221 112223333333334455666677777788888888888765 57899
Q ss_pred EEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHH
Q psy16310 1082 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 1161 (1493)
Q Consensus 1082 VF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~y 1161 (1493)
|||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+...|
T Consensus 281 Vf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~ 360 (417)
T 2i4i_A 281 VFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 360 (417)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHH
T ss_pred EEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccc
Q psy16310 1162 IHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198 (1493)
Q Consensus 1162 iqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~ 1198 (1493)
+||+||+||.|+.|.|++|+++.+...+..+.+.+..
T Consensus 361 ~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 397 (417)
T 2i4i_A 361 VHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 397 (417)
T ss_dssp HHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred HHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHH
Confidence 9999999999999999999999998888877766543
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=489.25 Aligned_cols=362 Identities=27% Similarity=0.502 Sum_probs=308.3
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
..+|+++++++.++++|...||..|+|+|.++|+. +..++|++++||||||||++|++|+++.+..
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~-i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------------- 101 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQ-IIKGRDVIAQSQSGTGKTATFSISVLQCLDI------------- 101 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHHHHHHHHTCCT-------------
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhCCCCEEEECCCCCCchHHHHHHHHHHHhh-------------
Confidence 45799999999999999999999999999999995 5577899999999999999999999986521
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
...+.++|||+||++|+.|+++.+..++...++.+..++||.....+...+..+
T Consensus 102 --------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 155 (410)
T 2j0s_A 102 --------------------------QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 155 (410)
T ss_dssp --------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHC
T ss_pred --------------------------ccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcC
Confidence 124467999999999999999999999988999999999999998888888778
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|+|+||++|.+++..+.. .+.++++||+||||++++++|...+..++..+ +...|++++|||++..+...
T Consensus 156 ~~ivv~Tp~~l~~~l~~~~~---~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~-----~~~~~~i~~SAT~~~~~~~~ 227 (410)
T 2j0s_A 156 QHVVAGTPGRVFDMIRRRSL---RTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL-----PPATQVVLISATLPHEILEM 227 (410)
T ss_dssp CSEEEECHHHHHHHHHTTSS---CCTTCCEEEEETHHHHTSTTTHHHHHHHHTTS-----CTTCEEEEEESCCCHHHHTT
T ss_pred CCEEEcCHHHHHHHHHhCCc---cHhheeEEEEccHHHHHhhhhHHHHHHHHHhC-----ccCceEEEEEcCCCHHHHHH
Confidence 89999999999999987653 35578999999999999999998888888766 46789999999999765543
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccc-hhhHHHHHHHh-CCCcEEEEe
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE-KDSYLYYFILQ-HPGRTLVFC 1084 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~-~~~~~IVF~ 1084 (1493)
+... +..+..+...........+.+.+..+.... +...+..++.. ..+++||||
T Consensus 228 ~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~ 283 (410)
T 2j0s_A 228 TNKF------------------------MTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFC 283 (410)
T ss_dssp GGGT------------------------CSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEEC
T ss_pred HHHH------------------------cCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEE
Confidence 3211 112222222222233344555555555444 66666666654 357999999
Q ss_pred cchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHH
Q psy16310 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164 (1493)
Q Consensus 1085 ~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr 1164 (1493)
+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+...|+||
T Consensus 284 ~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr 363 (410)
T 2j0s_A 284 NTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR 363 (410)
T ss_dssp SSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1165 ~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
+||+||.|+.|.+++|+++.+...+..+.+.++..+
T Consensus 364 ~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 399 (410)
T 2j0s_A 364 IGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQI 399 (410)
T ss_dssp HTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCC
T ss_pred cccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999988887653
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=480.74 Aligned_cols=380 Identities=30% Similarity=0.476 Sum_probs=298.3
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCC
Q psy16310 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 227 (1493)
Q Consensus 148 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 227 (1493)
.++.+|+++++++.++++|...||..|+|+|.++|| ++..++|++++||||||||++|++|+++++.......
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~-~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~------ 84 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIP-IIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGE------ 84 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCH------
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccc------
Confidence 445679999999999999999999999999999998 5668899999999999999999999999886532110
Q ss_pred CccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc
Q psy16310 228 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 307 (1493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~ 307 (1493)
........ ........++++|||+||++||.|+++.+..++...++++..++|+.....+...+.
T Consensus 85 ----------~~~~~~~~-----~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 149 (417)
T 2i4i_A 85 ----------ALRAMKEN-----GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLE 149 (417)
T ss_dssp ----------HHHHHHHC-----BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHT
T ss_pred ----------hhhccccc-----cccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhh
Confidence 00000000 000112234689999999999999999999998888999999999999998888888
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
.+++|+|+||++|.+++..+... +.++++|||||||++++++|...+..++......
T Consensus 150 ~~~~I~v~Tp~~l~~~l~~~~~~---~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~-------------------- 206 (417)
T 2i4i_A 150 RGCHLLVATPGRLVDMMERGKIG---LDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMP-------------------- 206 (417)
T ss_dssp TCCSEEEECHHHHHHHHHTTSBC---CTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCC--------------------
T ss_pred CCCCEEEEChHHHHHHHHcCCcC---hhhCcEEEEEChhHhhccCcHHHHHHHHHhccCC--------------------
Confidence 88999999999999999876543 4578999999999999999999998887643211
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 467 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1493)
.....|+++||||+++.+..+...... .+.......
T Consensus 207 ---------~~~~~~~i~~SAT~~~~~~~~~~~~~~------------------------~~~~~~~~~----------- 242 (417)
T 2i4i_A 207 ---------PKGVRHTMMFSATFPKEIQMLARDFLD------------------------EYIFLAVGR----------- 242 (417)
T ss_dssp ---------CBTTBEEEEEESCCCHHHHHHHHHHCS------------------------SCEEEEEC------------
T ss_pred ---------CcCCcEEEEEEEeCCHHHHHHHHHHcC------------------------CCEEEEeCC-----------
Confidence 023579999999998766544321110 000000000
Q ss_pred hhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC--CC
Q psy16310 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH--PG 545 (1493)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~ 545 (1493)
.......+......+....+...+..++... .+
T Consensus 243 ---------------------------------------------~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~ 277 (417)
T 2i4i_A 243 ---------------------------------------------VGSTSENITQKVVWVEESDKRSFLLDLLNATGKDS 277 (417)
T ss_dssp ------------------------------------------------CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTC
T ss_pred ---------------------------------------------CCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCC
Confidence 0000011111222333445666777777664 56
Q ss_pred cEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCCh
Q psy16310 546 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 625 (1493)
Q Consensus 546 ~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~ 625 (1493)
++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+|++||+||+|.+.
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~ 357 (417)
T 2i4i_A 278 LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDI 357 (417)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSH
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 626 EIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 626 ~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
..|+||+||+||.|+.|.|++|+++.+......+..
T Consensus 358 ~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 393 (417)
T 2i4i_A 358 EEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 393 (417)
T ss_dssp HHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHH
T ss_pred HHHHHhcCccccCCCCceEEEEEccccHHHHHHHHH
Confidence 999999999999999999999999999887777643
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-48 Score=471.91 Aligned_cols=361 Identities=29% Similarity=0.473 Sum_probs=306.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
..+|++++|++.++++|...||..|+|+|.++++.+ ..++++++++|||||||++|++|++..+..
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i-~~~~~~li~a~TGsGKT~~~~~~~~~~~~~------------- 85 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVA-ITGRDILARAKNGTGKTAAFVIPTLEKVKP------------- 85 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHH-HHTCCEEEECCTTSCHHHHHHHHHHHHCCT-------------
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hcCCCEEEECCCCcHHHHHHHHHHHHHHhh-------------
Confidence 457999999999999999999999999999999854 467899999999999999999999987632
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
...+.++||++||++|+.|+++.++.++...++.+..++|+.....+...+...
T Consensus 86 --------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 139 (400)
T 1s2m_A 86 --------------------------KLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNET 139 (400)
T ss_dssp --------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSC
T ss_pred --------------------------ccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCC
Confidence 123457999999999999999999999988899999999999988887777788
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|+|+||++|.+++..+.. .+.++++||+||||++.+.+|...+..++..+ +...|++++|||++..+...
T Consensus 140 ~~Ivv~T~~~l~~~~~~~~~---~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~-----~~~~~~i~lSAT~~~~~~~~ 211 (400)
T 1s2m_A 140 VHILVGTPGRVLDLASRKVA---DLSDCSLFIMDEADKMLSRDFKTIIEQILSFL-----PPTHQSLLFSATFPLTVKEF 211 (400)
T ss_dssp CSEEEECHHHHHHHHHTTCS---CCTTCCEEEEESHHHHSSHHHHHHHHHHHTTS-----CSSCEEEEEESCCCHHHHHH
T ss_pred CCEEEEchHHHHHHHHhCCc---ccccCCEEEEeCchHhhhhchHHHHHHHHHhC-----CcCceEEEEEecCCHHHHHH
Confidence 89999999999998876543 35678999999999999887777777777655 35689999999999776655
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CCcEEEEec
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCN 1085 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~ 1085 (1493)
+..... .+..+..... .....+.+.+..+....+...+..++... .+++||||+
T Consensus 212 ~~~~~~------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~ 266 (400)
T 1s2m_A 212 MVKHLH------------------------KPYEINLMEE-LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCN 266 (400)
T ss_dssp HHHHCS------------------------SCEEESCCSS-CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECS
T ss_pred HHHHcC------------------------CCeEEEeccc-cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEe
Confidence 432211 1111111111 12334555566666677777777776654 578999999
Q ss_pred chhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHH
Q psy16310 1086 SISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 1165 (1493)
Q Consensus 1086 s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~ 1165 (1493)
++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.+...|+||+
T Consensus 267 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~ 346 (400)
T 1s2m_A 267 STNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRI 346 (400)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1166 GRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1166 GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
||+||.|+.|.|++|+++.+...+.++.+.++..+
T Consensus 347 GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~ 381 (400)
T 1s2m_A 347 GRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEI 381 (400)
T ss_dssp CBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred chhcCCCCCceEEEEeccchHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999998886543
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-48 Score=491.16 Aligned_cols=365 Identities=27% Similarity=0.419 Sum_probs=292.3
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhhHHHhhc-cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHH
Q psy16310 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 852 (1493)
Q Consensus 774 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~-~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 852 (1493)
.|++.++++|..+||..|||+|.++|+.++. .++|++++||||||||++|++|+++.+.....
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~---------------- 90 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF---------------- 90 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT----------------
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc----------------
Confidence 3999999999999999999999999996664 47899999999999999999999998865321
Q ss_pred HHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhC----CCCcEEEEEEcCCCHHHHHHHhc-CCC
Q psy16310 853 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK----YTPVKVACVVGGMSTEKQLRILN-KCP 927 (1493)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~----~~~~~v~~~~gg~~~~~~~~~l~-~~~ 927 (1493)
....++++|||+||++||.|+++.++.++. ...+.+..++||.....+...+. .++
T Consensus 91 -------------------~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~ 151 (579)
T 3sqw_A 91 -------------------DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRP 151 (579)
T ss_dssp -------------------SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCC
T ss_pred -------------------cccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCC
Confidence 123456899999999999999999999763 24577888999998888776664 478
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhccc--CCCCCceEEEEecccccchHh
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT--ETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~--~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
+|+|+||++|.+++.... ...+..+++|||||||+|++++|...+..++..+... ..+..+|+++||||+++.+..
T Consensus 152 ~IlV~Tp~~l~~~l~~~~--~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~ 229 (579)
T 3sqw_A 152 NIVIATPGRLIDVLEKYS--NKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQK 229 (579)
T ss_dssp SEEEECHHHHHHHHHHHH--HHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHH
T ss_pred CEEEECHHHHHHHHHhcc--ccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHH
Confidence 999999999999987542 1246678999999999999999999999998887542 223478999999999987665
Q ss_pred HHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccc----cccccccceeeEEEeccc-chhh----HHHHHHH--
Q psy16310 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE----KIGITKTLTESKILCKHD-EKDS----YLYYFIL-- 1074 (1493)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~k~~----~l~~~l~-- 1074 (1493)
.+..... .+..+.+.. .......+.+....+... .... .+...+.
T Consensus 230 ~~~~~l~------------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 285 (579)
T 3sqw_A 230 LANNIMN------------------------KKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKER 285 (579)
T ss_dssp HTTTTCC------------------------SSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcC------------------------CCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhc
Confidence 4422211 111111110 111223344444444332 2221 2222223
Q ss_pred hCCCcEEEEecchhhHHHHHHHHHhc---CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEE
Q psy16310 1075 QHPGRTLVFCNSISSVKRLTQLLTML---KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 1151 (1493)
Q Consensus 1075 ~~~~~~IVF~~s~~~~~~l~~~L~~~---~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~ 1151 (1493)
..++++||||+|+..|+.++..|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~ 365 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ 365 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE
Confidence 23679999999999999999999987 899999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhcccc
Q psy16310 1152 YHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1152 ~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~ 1199 (1493)
|++|.+...|+||+|||||+|+.|.|++|+.+.|...++.+.+.....
T Consensus 366 ~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~ 413 (579)
T 3sqw_A 366 IGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIV 413 (579)
T ss_dssp ESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCC
T ss_pred cCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999888775543
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-48 Score=474.37 Aligned_cols=361 Identities=26% Similarity=0.455 Sum_probs=291.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
...|+++++++.+++.|...||..|+|+|.++|+. +..|++++++||||||||++|++|+++.+..
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------------- 104 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILP-CIKGYDVIAQAQSGTGKTATFAISILQQIEL------------- 104 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHH-HHTTCCEEECCCSCSSSHHHHHHHHHHHCCT-------------
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHH-HhCCCCEEEECCCCCcccHHHHHHHHHHHhh-------------
Confidence 45799999999999999999999999999999985 4578899999999999999999999987632
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc-C
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-K 925 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~-~ 925 (1493)
...+.++||++||++|+.|+++.++.++...++.+..++||.....+...+. .
T Consensus 105 --------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (414)
T 3eiq_A 105 --------------------------DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME 158 (414)
T ss_dssp --------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTT
T ss_pred --------------------------cCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcC
Confidence 1245579999999999999999999999888999999999998887776665 6
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHh
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
.++|+|+||++|++++..+.. .+..+++||+||||++.+++|...+..++..+ +...|++++|||++..+..
T Consensus 159 ~~~iiv~T~~~l~~~l~~~~~---~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~-----~~~~~~i~~SAT~~~~~~~ 230 (414)
T 3eiq_A 159 APHIIVGTPGRVFDMLNRRYL---SPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL-----NSNTQVVLLSATMPSDVLE 230 (414)
T ss_dssp CCSEEEECHHHHHHHHHHTSS---CSTTCCEEEECSHHHHHHTTTHHHHHHHHTTS-----CTTCEEEEECSCCCHHHHH
T ss_pred CCCEEEECHHHHHHHHHcCCc---ccccCcEEEEECHHHhhccCcHHHHHHHHHhC-----CCCCeEEEEEEecCHHHHH
Confidence 789999999999999987654 34568999999999999999999999888776 3678999999999977665
Q ss_pred HHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccc-hhhHHHHHHHhC-CCcEEEE
Q psy16310 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE-KDSYLYYFILQH-PGRTLVF 1083 (1493)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~-~~~~IVF 1083 (1493)
..... +..+..+...........+.+.+..+.... +...+..++... .+++|||
T Consensus 231 ~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf 286 (414)
T 3eiq_A 231 VTKKF------------------------MRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIF 286 (414)
T ss_dssp HHTTT------------------------CSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEE
T ss_pred HHHHH------------------------cCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEE
Confidence 44221 112222222222233344555555554443 666666666654 5799999
Q ss_pred ecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHH
Q psy16310 1084 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163 (1493)
Q Consensus 1084 ~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiq 1163 (1493)
|+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.+...|+|
T Consensus 287 ~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Q 366 (414)
T 3eiq_A 287 INTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 366 (414)
T ss_dssp CSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHH
T ss_pred eCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCCeEEEEecCCCHHHHHHHHHhcccc
Q psy16310 1164 RSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1164 r~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~ 1199 (1493)
|+||+||.|+.|.|++|+++.+...+..+.+.++..
T Consensus 367 r~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 402 (414)
T 3eiq_A 367 RIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS 402 (414)
T ss_dssp HSCCC-------CEEEEECSTHHHHHHHHHHHTTCC
T ss_pred hcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999998887654
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-48 Score=471.54 Aligned_cols=355 Identities=27% Similarity=0.500 Sum_probs=289.1
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
..+|+++++++.++++|...||..|+|+|.++++ .+..++|+++++|||||||++|++|+++.+..
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~-~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------------- 101 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIK-QIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------------- 101 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT-------------
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHH-HHhCCCCEEEECCCCCCchHHHHHHHHHHHhh-------------
Confidence 4579999999999999999999999999999998 55578999999999999999999999976521
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
...+.++|||+||++|+.|+++.+..++...++.+..++|+.....+...+..+
T Consensus 102 --------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 155 (410)
T 2j0s_A 102 --------------------------QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 155 (410)
T ss_dssp --------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHC
T ss_pred --------------------------ccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcC
Confidence 123467999999999999999999999988899999999999998888888888
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
++|+|+||++|.+++...... +.++++|||||||+++++++...+..++..+
T Consensus 156 ~~ivv~Tp~~l~~~l~~~~~~---~~~~~~vViDEah~~~~~~~~~~~~~i~~~~------------------------- 207 (410)
T 2j0s_A 156 QHVVAGTPGRVFDMIRRRSLR---TRAIKMLVLDEADEMLNKGFKEQIYDVYRYL------------------------- 207 (410)
T ss_dssp CSEEEECHHHHHHHHHTTSSC---CTTCCEEEEETHHHHTSTTTHHHHHHHHTTS-------------------------
T ss_pred CCEEEcCHHHHHHHHHhCCcc---HhheeEEEEccHHHHHhhhhHHHHHHHHHhC-------------------------
Confidence 999999999999999876543 4578999999999999999988888877554
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1493)
+...|++++|||++..+..+...... .+.........
T Consensus 208 --------~~~~~~i~~SAT~~~~~~~~~~~~~~------------------------~~~~~~~~~~~----------- 244 (410)
T 2j0s_A 208 --------PPATQVVLISATLPHEILEMTNKFMT------------------------DPIRILVKRDE----------- 244 (410)
T ss_dssp --------CTTCEEEEEESCCCHHHHTTGGGTCS------------------------SCEEECCCGGG-----------
T ss_pred --------ccCceEEEEEcCCCHHHHHHHHHHcC------------------------CCEEEEecCcc-----------
Confidence 34579999999998765543321100 00000000000
Q ss_pred hhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccc-cCchhhHHHHHHhh-CCCcE
Q psy16310 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYLYYFILQ-HPGRT 547 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~-~~~~~ 547 (1493)
............+. ...+...+..++.. ..+++
T Consensus 245 ---------------------------------------------~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~ 279 (410)
T 2j0s_A 245 ---------------------------------------------LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQA 279 (410)
T ss_dssp ---------------------------------------------CSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEE
T ss_pred ---------------------------------------------ccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcE
Confidence 00000011111111 12245556665554 35799
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+...
T Consensus 280 lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~ 359 (410)
T 2j0s_A 280 VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL 359 (410)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHH
T ss_pred EEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|+||+||+||.|+.|.|++|+++.+...+..+.
T Consensus 360 ~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~ 392 (410)
T 2j0s_A 360 YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 392 (410)
T ss_dssp HHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHH
T ss_pred HHHhcccccCCCCceEEEEEecHHHHHHHHHHH
Confidence 999999999999999999999998877766653
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-47 Score=472.07 Aligned_cols=368 Identities=26% Similarity=0.455 Sum_probs=297.6
Q ss_pred CcchhhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhcc-CCcEEEEccCCCcchhHhhHHHHHHHhhhcCC
Q psy16310 759 NNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 837 (1493)
Q Consensus 759 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~dvlv~apTGsGKTla~~lpil~~l~~~~~~ 837 (1493)
.++.+..++.+|+++++++.++++|.+.||..|+|+|.++|+.++.+ +++++++||||||||++|++|+++.+..
T Consensus 16 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~---- 91 (412)
T 3fht_A 16 DPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP---- 91 (412)
T ss_dssp CTTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT----
T ss_pred cCCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh----
Confidence 34445566788999999999999999999999999999999966643 4899999999999999999999987632
Q ss_pred CCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCH
Q psy16310 838 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMST 916 (1493)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~ 916 (1493)
...++++|||+||++|+.|+++.++.++... ++.+....|+...
T Consensus 92 -----------------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (412)
T 3fht_A 92 -----------------------------------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 136 (412)
T ss_dssp -----------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCC
T ss_pred -----------------------------------cCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcch
Confidence 1344579999999999999999999988764 6788888887654
Q ss_pred HHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhcc-CCChhHHHHHHHHhcccCCCCCceEEEE
Q psy16310 917 EKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTFVF 995 (1493)
Q Consensus 917 ~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~-~~~~~~l~~il~~l~~~~~~~~~q~ll~ 995 (1493)
... ....++|+|+||++|.+++.... ...+.++++|||||||++++ .++...+..++..+ +...|++++
T Consensus 137 ~~~---~~~~~~ivv~T~~~l~~~~~~~~--~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~ 206 (412)
T 3fht_A 137 ERG---QKISEQIVIGTPGTVLDWCSKLK--FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML-----PRNCQMLLF 206 (412)
T ss_dssp CTT---CCCCCSEEEECHHHHHHHHTTSC--SSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTS-----CTTCEEEEE
T ss_pred hhh---hcCCCCEEEECchHHHHHHHhcC--CcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhC-----CCCceEEEE
Confidence 322 13457999999999999886522 12456899999999999987 67777777777665 367899999
Q ss_pred ecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecc-cchhhHHHHHHH
Q psy16310 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFIL 1074 (1493)
Q Consensus 996 SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~ 1074 (1493)
|||++..+....... +..+..+.+.........+.+.+..+.. ..+...+..++.
T Consensus 207 SAT~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (412)
T 3fht_A 207 SATFEDSVWKFAQKV------------------------VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYG 262 (412)
T ss_dssp ESCCCHHHHHHHHHH------------------------SSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHH
T ss_pred EeecCHHHHHHHHHh------------------------cCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHh
Confidence 999997765544221 2233334444434444555555555544 345555555554
Q ss_pred h-CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEec
Q psy16310 1075 Q-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153 (1493)
Q Consensus 1075 ~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d 1153 (1493)
. ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||
T Consensus 263 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 342 (412)
T 3fht_A 263 AITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFD 342 (412)
T ss_dssp HHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESS
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEEC
Confidence 4 467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------CChhHHHHHHhccCCCCCCCeEEEEecCCC-HHHHHHHHHhcccc
Q psy16310 1154 VP------RTSEIYIHRSGRTARANNEGLTLVLIESDE-IPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1154 ~p------~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e-~~~~~~~~~~~~~~ 1199 (1493)
+| .+..+|+||+||+||.|+.|.+++|+++.+ ...+..+.+.++..
T Consensus 343 ~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~ 395 (412)
T 3fht_A 343 LPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKK 395 (412)
T ss_dssp CCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCc
Confidence 99 567899999999999999999999998775 67777777777654
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=489.18 Aligned_cols=365 Identities=26% Similarity=0.413 Sum_probs=291.6
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhhHHHhhc-cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHH
Q psy16310 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 852 (1493)
Q Consensus 774 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~-~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 852 (1493)
.|++.++++|...||..|||+|.++|+.++. .++|++++||||||||++|++|+++.+.....
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~---------------- 141 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF---------------- 141 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT----------------
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc----------------
Confidence 3999999999999999999999999997664 47899999999999999999999998865321
Q ss_pred HHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCC----CCcEEEEEEcCCCHHHHHHHh-cCCC
Q psy16310 853 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY----TPVKVACVVGGMSTEKQLRIL-NKCP 927 (1493)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~----~~~~v~~~~gg~~~~~~~~~l-~~~~ 927 (1493)
....++++|||+||++||.|+++.++.+... ..+.+..++||.....+...+ ..++
T Consensus 142 -------------------~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 202 (563)
T 3i5x_A 142 -------------------DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRP 202 (563)
T ss_dssp -------------------SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCC
T ss_pred -------------------cccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCC
Confidence 1123568999999999999999999987432 346788899999888777665 4478
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhccc--CCCCCceEEEEecccccchHh
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMT--ETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~--~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
+|+|+||++|.+++..... ..+..+++|||||||+|++++|...+..++..+... ......|+++||||++..+..
T Consensus 203 ~Iiv~Tp~~l~~~l~~~~~--~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~ 280 (563)
T 3i5x_A 203 NIVIATPGRLIDVLEKYSN--KFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQK 280 (563)
T ss_dssp SEEEECHHHHHHHHHHHHH--HHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHH
T ss_pred CEEEECcHHHHHHHHhccc--cccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHH
Confidence 9999999999999875421 236679999999999999999999999998887542 224578999999999987665
Q ss_pred HHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEec--c--ccccccccceeeEEEeccc-chhhHH----HHHHH--
Q psy16310 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDL--T--EKIGITKTLTESKILCKHD-EKDSYL----YYFIL-- 1074 (1493)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~-~k~~~l----~~~l~-- 1074 (1493)
.+..... .+..+.+ . ........+.+....+... .+...+ ...+.
T Consensus 281 ~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 336 (563)
T 3i5x_A 281 LANNIMN------------------------KKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKER 336 (563)
T ss_dssp HTTTTCC------------------------SSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcC------------------------CCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhc
Confidence 4422211 1111111 0 1111223344444444332 222222 22222
Q ss_pred hCCCcEEEEecchhhHHHHHHHHHhc---CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEE
Q psy16310 1075 QHPGRTLVFCNSISSVKRLTQLLTML---KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 1151 (1493)
Q Consensus 1075 ~~~~~~IVF~~s~~~~~~l~~~L~~~---~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~ 1151 (1493)
..++++||||+|+..|+.++..|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~ 416 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ 416 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE
Confidence 33679999999999999999999987 889999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhcccc
Q psy16310 1152 YHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1152 ~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~ 1199 (1493)
||+|.+...|+||+|||||+|+.|.|++|+.+.+...++.+.+.....
T Consensus 417 ~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~ 464 (563)
T 3i5x_A 417 IGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIV 464 (563)
T ss_dssp ESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCC
T ss_pred ECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999888775543
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-47 Score=455.57 Aligned_cols=357 Identities=31% Similarity=0.526 Sum_probs=307.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
..+|++++|++.++++|.+.||..|+|+|.++++.++.+++++++++|||||||++|++|++..+..
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~------------- 71 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE------------- 71 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------------
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-------------
Confidence 3569999999999999999999999999999999777655899999999999999999999876521
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
..+.++||++||++|+.|+++.+..+....++.+..++||.....+...+. .
T Consensus 72 ---------------------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~ 123 (367)
T 1hv8_A 72 ---------------------------NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-N 123 (367)
T ss_dssp ---------------------------SSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-T
T ss_pred ---------------------------cCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-C
Confidence 235579999999999999999999998888899999999998877766655 5
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|+|+||++|.+.+..+.. .+.++++||+||||++.++++...+..++..+ +...+++++|||++......
T Consensus 124 ~~iiv~T~~~l~~~~~~~~~---~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~-----~~~~~~i~~SAT~~~~~~~~ 195 (367)
T 1hv8_A 124 ANIVVGTPGRILDHINRGTL---NLKNVKYFILDEADEMLNMGFIKDVEKILNAC-----NKDKRILLFSATMPREILNL 195 (367)
T ss_dssp CSEEEECHHHHHHHHHTTCS---CTTSCCEEEEETHHHHHTTTTHHHHHHHHHTS-----CSSCEEEEECSSCCHHHHHH
T ss_pred CCEEEecHHHHHHHHHcCCc---ccccCCEEEEeCchHhhhhchHHHHHHHHHhC-----CCCceEEEEeeccCHHHHHH
Confidence 79999999999999886543 35678999999999999999988888888765 36789999999999766544
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecc
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS 1086 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s 1086 (1493)
+.... .....+.. .....+.+.+..+....+...+..++....+++||||++
T Consensus 196 ~~~~~------------------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lvf~~~ 247 (367)
T 1hv8_A 196 AKKYM------------------------GDYSFIKA----KINANIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKT 247 (367)
T ss_dssp HHHHC------------------------CSEEEEEC----CSSSSSEEEEEECCGGGHHHHHHHHHCSTTCCEEEECSS
T ss_pred HHHHc------------------------CCCeEEEe----cCCCCceEEEEEeChHHHHHHHHHHHhcCCCcEEEEECC
Confidence 32211 11111111 112345556666777788888888888778899999999
Q ss_pred hhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHh
Q psy16310 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 1166 (1493)
Q Consensus 1087 ~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~G 1166 (1493)
+..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.+..+|+||+|
T Consensus 248 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~G 327 (367)
T 1hv8_A 248 KRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIG 327 (367)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHST
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1167 RTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1167 R~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
|+||.|+.|.+++++++.+...+..+.+.++..+
T Consensus 328 R~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 361 (367)
T 1hv8_A 328 RTGRAGKKGKAISIINRREYKKLRYIERAMKLKI 361 (367)
T ss_dssp TTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCC
T ss_pred ccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999988876643
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-49 Score=495.39 Aligned_cols=367 Identities=26% Similarity=0.453 Sum_probs=164.2
Q ss_pred CcchhhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhcc-CCcEEEEccCCCcchhHhhHHHHHHHhhhcCC
Q psy16310 759 NNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 837 (1493)
Q Consensus 759 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~dvlv~apTGsGKTla~~lpil~~l~~~~~~ 837 (1493)
.++.+..++.+|.+++|++.++++|+.+||..|||+|.++||.++.+ +++++++||||||||++|++|+++.+..
T Consensus 83 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~---- 158 (479)
T 3fmp_B 83 DPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP---- 158 (479)
T ss_dssp STTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT----
T ss_pred CCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh----
Confidence 34444556778999999999999999999999999999999966643 4899999999999999999999976632
Q ss_pred CCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCH
Q psy16310 838 PTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMST 916 (1493)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~ 916 (1493)
...++++|||+||++|+.|+++.++.++... ++.+....|+...
T Consensus 159 -----------------------------------~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (479)
T 3fmp_B 159 -----------------------------------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 203 (479)
T ss_dssp -----------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCC
T ss_pred -----------------------------------cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccc
Confidence 1334579999999999999999999988764 5778888877653
Q ss_pred HHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhcc-CCChhHHHHHHHHhcccCCCCCceEEEE
Q psy16310 917 EKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTFVF 995 (1493)
Q Consensus 917 ~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~-~~~~~~l~~il~~l~~~~~~~~~q~ll~ 995 (1493)
... ....++|+|+||++|++++.... ...+.++++|||||||++++ .++...+..++..+ +..+|+++|
T Consensus 204 ~~~---~~~~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~-----~~~~~~i~~ 273 (479)
T 3fmp_B 204 ERG---QKISEQIVIGTPGTVLDWCSKLK--FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML-----PRNCQMLLF 273 (479)
T ss_dssp CTT---CCCCCSEEEECHHHHHHHHTTSC--CCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTS-----CTTSEEEEE
T ss_pred ccc---ccCCCCEEEECchHHHHHHHhcC--CcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhC-----CccceEEEE
Confidence 322 13456899999999999986532 23457899999999999987 56666666666554 467899999
Q ss_pred ecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecc-cchhhHHHHHHH
Q psy16310 996 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFIL 1074 (1493)
Q Consensus 996 SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~ 1074 (1493)
|||++..+....... +..+..+.+.........+.+.+..+.. ..+...+..++.
T Consensus 274 SAT~~~~~~~~~~~~------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 329 (479)
T 3fmp_B 274 SATFEDSVWKFAQKV------------------------VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYG 329 (479)
T ss_dssp ESCCCHHHHHHHHHH------------------------SSSEEEEEEC-------------------------------
T ss_pred eCCCCHHHHHHHHHH------------------------cCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHh
Confidence 999998765544221 1223333333333333444444444443 334444444443
Q ss_pred h-CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEec
Q psy16310 1075 Q-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153 (1493)
Q Consensus 1075 ~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d 1153 (1493)
. ..+++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||
T Consensus 330 ~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d 409 (479)
T 3fmp_B 330 AITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFD 409 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEec
Confidence 3 357899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------CChhHHHHHHhccCCCCCCCeEEEEecCCC-HHHHHHHHHhccc
Q psy16310 1154 VP------RTSEIYIHRSGRTARANNEGLTLVLIESDE-IPLYIKMFNSLEK 1198 (1493)
Q Consensus 1154 ~p------~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e-~~~~~~~~~~~~~ 1198 (1493)
+| .+...|+||+|||||+|+.|.|++|+++.+ ...+..+.+.++.
T Consensus 410 ~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~ 461 (479)
T 3fmp_B 410 LPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNK 461 (479)
T ss_dssp ----------------------------------------------------
T ss_pred CCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCC
Confidence 99 467899999999999999999999998775 5566666555544
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=458.86 Aligned_cols=359 Identities=26% Similarity=0.479 Sum_probs=297.0
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
..|+++++++.++++|.++||..|+|+|.++++. +..++++++++|||+|||++|++|++..+..
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-------------- 72 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQ-AILGMDVLCQAKSGMGKTAVFVLATLQQLEP-------------- 72 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHH-HTTTCCEEEECSSCSSHHHHHHHHHHHHCCC--------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEECCCCCcHHHHHHHHHHHhhcc--------------
Confidence 4699999999999999999999999999999985 4567899999999999999999999976522
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCHHHHHHHhc-C
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILN-K 925 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~-~ 925 (1493)
...+.++||++||++|+.|+++.+..+.... ++++..++||.....+...+. .
T Consensus 73 -------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 127 (391)
T 1xti_A 73 -------------------------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 127 (391)
T ss_dssp -------------------------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHS
T ss_pred -------------------------cCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcC
Confidence 1234579999999999999999999998776 799999999998877766554 3
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccC-CChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~-~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
.++|+|+||++|..++..... .+.++++||+||||++.++ ++...+..++..+ +...|++++|||++..+.
T Consensus 128 ~~~iiv~T~~~l~~~~~~~~~---~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~SAT~~~~~~ 199 (391)
T 1xti_A 128 CPHIVVGTPGRILALARNKSL---NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMT-----PHEKQVMMFSATLSKEIR 199 (391)
T ss_dssp CCSEEEECHHHHHHHHHTTSS---CCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTS-----CSSSEEEEEESSCCSTHH
T ss_pred CCCEEEECHHHHHHHHHcCCc---cccccCEEEEeCHHHHhhccchHHHHHHHHhhC-----CCCceEEEEEeeCCHHHH
Confidence 579999999999998876553 3568899999999999874 6666677676654 357899999999998765
Q ss_pred hHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEecccc-ccccccceeeEEEecccchhhHHHHHHHhC-CCcEEE
Q psy16310 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK-IGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLV 1082 (1493)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IV 1082 (1493)
..+.... ..+..+..... ......+.+.+..+....+...+..++... .+++||
T Consensus 200 ~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lv 255 (391)
T 1xti_A 200 PVCRKFM------------------------QDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVI 255 (391)
T ss_dssp HHHHHHC------------------------SSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHc------------------------CCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEE
Confidence 5443221 12222222211 122344556666777778888888777765 578999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHH
Q psy16310 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 1162 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yi 1162 (1493)
||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+..|||||+++++|+|+|++++||+|++|.+...|+
T Consensus 256 f~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~ 335 (391)
T 1xti_A 256 FVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYL 335 (391)
T ss_dssp ECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHH
T ss_pred EeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCeEEEEecCCCH-HHHHHHHHhccc
Q psy16310 1163 HRSGRTARANNEGLTLVLIESDEI-PLYIKMFNSLEK 1198 (1493)
Q Consensus 1163 qr~GR~gR~g~~G~~i~l~~~~e~-~~~~~~~~~~~~ 1198 (1493)
||+||+||.|+.|.+++|+++.+. ..+..+.+.++.
T Consensus 336 Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 372 (391)
T 1xti_A 336 HRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 372 (391)
T ss_dssp HHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTC
T ss_pred HhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcC
Confidence 999999999999999999988744 455666666543
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-46 Score=456.26 Aligned_cols=365 Identities=23% Similarity=0.422 Sum_probs=289.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhcc-CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCC
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 845 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 845 (1493)
+.+|++++|++.++++|...||..|+|+|.++++.++.+ +++++++||||||||++|++|++..+..
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------------ 71 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP------------ 71 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------------
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc------------
Confidence 467999999999999999999999999999999966543 2899999999999999999999987632
Q ss_pred cchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcC
Q psy16310 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925 (1493)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~ 925 (1493)
...+.++|||+||++|+.|+++.++.++...++.+..++|+...... ..
T Consensus 72 ---------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 120 (395)
T 3pey_A 72 ---------------------------EDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QI 120 (395)
T ss_dssp ---------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CB
T ss_pred ---------------------------CCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cC
Confidence 12455799999999999999999999998888998888887543221 23
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhcc-CCChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~-~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
.++|+|+||++|.+++..+.. .+.++++||+||||++.+ .++...+..+...+ +...|++++|||+++.+.
T Consensus 121 ~~~iiv~T~~~l~~~~~~~~~---~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~SAT~~~~~~ 192 (395)
T 3pey_A 121 NAQVIVGTPGTVLDLMRRKLM---QLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFL-----PKDTQLVLFSATFADAVR 192 (395)
T ss_dssp CCSEEEECHHHHHHHHHTTCB---CCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTS-----CTTCEEEEEESCCCHHHH
T ss_pred CCCEEEEcHHHHHHHHHcCCc---ccccCCEEEEEChhhhcCccccHHHHHHHHHhC-----CCCcEEEEEEecCCHHHH
Confidence 679999999999999876543 366789999999999988 56666676666655 367899999999997765
Q ss_pred hHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecc-cchhhHHHHHHHhC-CCcEEE
Q psy16310 1005 NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DEKDSYLYYFILQH-PGRTLV 1082 (1493)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~-~~~~IV 1082 (1493)
....... ..+..+...........+.+.+..+.. ..+...+..++... .+++||
T Consensus 193 ~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lv 248 (395)
T 3pey_A 193 QYAKKIV------------------------PNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSII 248 (395)
T ss_dssp HHHHHHS------------------------CSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEE
T ss_pred HHHHHhC------------------------CCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEE
Confidence 5442211 122222222222233444444444433 34444454444433 579999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCC------
Q psy16310 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR------ 1156 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~------ 1156 (1493)
||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.
T Consensus 249 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~ 328 (395)
T 3pey_A 249 FVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQA 328 (395)
T ss_dssp ECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSB
T ss_pred EeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ChhHHHHHHhccCCCCCCCeEEEEecCCCH-HHHHHHHHhccccCCCCCCCC
Q psy16310 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEI-PLYIKMFNSLEKKVDLPDFPI 1207 (1493)
Q Consensus 1157 s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~-~~~~~~~~~~~~~~~~~~~p~ 1207 (1493)
+..+|+||+||+||.|+.|.+++|+.+.+. ..+..+.+.++ ...+..+|.
T Consensus 329 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~ 379 (395)
T 3pey_A 329 DPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG-DIEMTRVPT 379 (395)
T ss_dssp CHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT-SCCCEECCS
T ss_pred CHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC-CceeecCCh
Confidence 999999999999999999999999987654 44555555544 233334443
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-46 Score=456.96 Aligned_cols=353 Identities=29% Similarity=0.472 Sum_probs=286.5
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
..+|++++|++.++++|.++||..|+|+|.++++ .+..++++++++|||||||++|++|++.++..
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~------------- 85 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIP-VAITGRDILARAKNGTGKTAAFVIPTLEKVKP------------- 85 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHH-HHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT-------------
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh-------------
Confidence 4579999999999999999999999999999998 55577899999999999999999999876632
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
...+.++||++||++|+.|+++.+..++...++.+..++|+.....+...+...
T Consensus 86 --------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 139 (400)
T 1s2m_A 86 --------------------------KLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNET 139 (400)
T ss_dssp --------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSC
T ss_pred --------------------------ccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCC
Confidence 123457999999999999999999999988899999999999988888888888
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
++|+|+||++|.+++...... +.++++|||||||++++.++...+..++..+
T Consensus 140 ~~Ivv~T~~~l~~~~~~~~~~---~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~------------------------- 191 (400)
T 1s2m_A 140 VHILVGTPGRVLDLASRKVAD---LSDCSLFIMDEADKMLSRDFKTIIEQILSFL------------------------- 191 (400)
T ss_dssp CSEEEECHHHHHHHHHTTCSC---CTTCCEEEEESHHHHSSHHHHHHHHHHHTTS-------------------------
T ss_pred CCEEEEchHHHHHHHHhCCcc---cccCCEEEEeCchHhhhhchHHHHHHHHHhC-------------------------
Confidence 999999999999988765443 5578999999999998877777776666443
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1493)
+...|++++|||++..+...+...... +........
T Consensus 192 --------~~~~~~i~lSAT~~~~~~~~~~~~~~~------------------------~~~~~~~~~------------ 227 (400)
T 1s2m_A 192 --------PPTHQSLLFSATFPLTVKEFMVKHLHK------------------------PYEINLMEE------------ 227 (400)
T ss_dssp --------CSSCEEEEEESCCCHHHHHHHHHHCSS------------------------CEEESCCSS------------
T ss_pred --------CcCceEEEEEecCCHHHHHHHHHHcCC------------------------CeEEEeccc------------
Confidence 345799999999987665443211100 000000000
Q ss_pred hhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCcEE
Q psy16310 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGRTL 548 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~I 548 (1493)
.....+......+....+...+..++... .+++|
T Consensus 228 ---------------------------------------------~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~l 262 (400)
T 1s2m_A 228 ---------------------------------------------LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAI 262 (400)
T ss_dssp ---------------------------------------------CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEE
T ss_pred ---------------------------------------------cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEE
Confidence 00000111112222334555566666554 47999
Q ss_pred EEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHH
Q psy16310 549 VFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIY 628 (1493)
Q Consensus 549 IF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~y 628 (1493)
|||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.++..|
T Consensus 263 Vf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~ 342 (400)
T 1s2m_A 263 IFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETY 342 (400)
T ss_dssp EECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHH
T ss_pred EEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 629 IHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 629 iQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
+||+||+||.|+.|.|++|+++.|...+..+
T Consensus 343 ~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i 373 (400)
T 1s2m_A 343 LHRIGRSGRFGHLGLAINLINWNDRFNLYKI 373 (400)
T ss_dssp HHHHCBSSCTTCCEEEEEEECGGGHHHHHHH
T ss_pred HHhcchhcCCCCCceEEEEeccchHHHHHHH
Confidence 9999999999999999999999887765555
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=477.43 Aligned_cols=364 Identities=27% Similarity=0.440 Sum_probs=279.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhc-cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHH
Q psy16310 158 IPETIIRALYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 236 (1493)
Q Consensus 158 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~-~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (1493)
|++.++++|..+||..|+|+|.++|+.++. .++|+|++||||||||++|++|+++.+.....
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~----------------- 90 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF----------------- 90 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----------------
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-----------------
Confidence 999999999999999999999999985553 47899999999999999999999998865321
Q ss_pred HHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcC----CCCeEEEEEEcCCCHHHHHHHhc-CCCC
Q psy16310 237 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK----YTPVKVACVVGGMSTEKQLRILN-KCPH 311 (1493)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~----~~~i~v~~~~G~~~~~~~~~~l~-~~~~ 311 (1493)
....++++|||+||++||.|+++.+..+.. ...+.+..++|+.....++..+. .+++
T Consensus 91 ------------------~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~ 152 (579)
T 3sqw_A 91 ------------------DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPN 152 (579)
T ss_dssp ------------------SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCS
T ss_pred ------------------cccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCC
Confidence 112356899999999999999999988752 23577888999998888777664 4789
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1493)
|+|+||++|.+++.... ...+..+++|||||||+|++++|.+.+..++..+.....
T Consensus 153 IlV~Tp~~l~~~l~~~~--~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~---------------------- 208 (579)
T 3sqw_A 153 IVIATPGRLIDVLEKYS--NKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS---------------------- 208 (579)
T ss_dssp EEEECHHHHHHHHHHHH--HHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS----------------------
T ss_pred EEEECHHHHHHHHHhcc--ccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhc----------------------
Confidence 99999999999887531 123567899999999999999999999999887754311
Q ss_pred ccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhh
Q psy16310 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 471 (1493)
Q Consensus 392 ~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1493)
.....+|+++||||+++.+..++........ ...+.......
T Consensus 209 ----~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~------------------------~~~~~~~~~~~---------- 250 (579)
T 3sqw_A 209 ----KSADNIKTLLFSATLDDKVQKLANNIMNKKE------------------------CLFLDTVDKNE---------- 250 (579)
T ss_dssp ----SCTTCCEEEEEESSCCTHHHHHTTTTCCSSE------------------------EEEEESSCSSS----------
T ss_pred ----ccccCceEEEEeccCChHHHHHHHHHcCCCc------------------------eEEEeecCccc----------
Confidence 1134579999999999876654422111000 00000000000
Q ss_pred ccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccccc-C----chhhHHHHHHh--hCC
Q psy16310 472 KHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-D----EKDSYLYYFIL--QHP 544 (1493)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~k~~~l~~~l~--~~~ 544 (1493)
+ .....+......+.. . .....+...+. ..+
T Consensus 251 ---------------------------------~---------~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (579)
T 3sqw_A 251 ---------------------------------P---------EAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSN 288 (579)
T ss_dssp ---------------------------------C---------SSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTC
T ss_pred ---------------------------------c---------ccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCC
Confidence 0 000000000000000 0 01122222233 235
Q ss_pred CcEEEEecchhhHHHHHHHHHhc---CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecC
Q psy16310 545 GRTLVFCNSISSVKRLTQLLTML---KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 621 (1493)
Q Consensus 545 ~~~IIF~~s~~~a~~L~~~L~~~---~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~ 621 (1493)
.++||||+|+..|+.++..|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+||+
T Consensus 289 ~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~ 368 (579)
T 3sqw_A 289 YKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGV 368 (579)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESC
T ss_pred CcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCC
Confidence 79999999999999999999887 889999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 622 PRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 622 P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|.++..|+||+|||||+|+.|.|++|+++.|...+..+.
T Consensus 369 p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~ 407 (579)
T 3sqw_A 369 PSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 407 (579)
T ss_dssp CSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHH
T ss_pred CCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHH
Confidence 999999999999999999999999999998877776664
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=459.81 Aligned_cols=356 Identities=26% Similarity=0.448 Sum_probs=274.7
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
..+|.++++++.+.+.|.+.||..|+++|.++++ .+..++|++++||||||||++|++|+++.+..
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~-~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------------- 104 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAIL-PCIKGYDVIAQAQSGTGKTATFAISILQQIEL------------- 104 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHH-HHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT-------------
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhH-HHhCCCCEEEECCCCCcccHHHHHHHHHHHhh-------------
Confidence 4578899999999999999999999999999998 55578999999999999999999999977632
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc-C
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-K 308 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~-~ 308 (1493)
...+.++||++||++|+.|+++.+..++...++.+..++|+.....+...+. .
T Consensus 105 --------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (414)
T 3eiq_A 105 --------------------------DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME 158 (414)
T ss_dssp --------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTT
T ss_pred --------------------------cCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcC
Confidence 1234679999999999999999999998888899999999998888777665 6
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
+++|+|+||++|.+++...... +.++++|||||||+++++++...+..++..+
T Consensus 159 ~~~iiv~T~~~l~~~l~~~~~~---~~~~~~vViDEah~~~~~~~~~~~~~~~~~~------------------------ 211 (414)
T 3eiq_A 159 APHIIVGTPGRVFDMLNRRYLS---PKYIKMFVLDEADEMLSRGFKDQIYDIFQKL------------------------ 211 (414)
T ss_dssp CCSEEEECHHHHHHHHHHTSSC---STTCCEEEECSHHHHHHTTTHHHHHHHHTTS------------------------
T ss_pred CCCEEEECHHHHHHHHHcCCcc---cccCcEEEEECHHHhhccCcHHHHHHHHHhC------------------------
Confidence 7899999999999999876544 4478999999999999999998888887655
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
....|+++||||++..+.......... +........
T Consensus 212 ---------~~~~~~i~~SAT~~~~~~~~~~~~~~~------------------------~~~~~~~~~----------- 247 (414)
T 3eiq_A 212 ---------NSNTQVVLLSATMPSDVLEVTKKFMRD------------------------PIRILVKKE----------- 247 (414)
T ss_dssp ---------CTTCEEEEECSCCCHHHHHHHTTTCSS------------------------CEEECCCCC-----------
T ss_pred ---------CCCCeEEEEEEecCHHHHHHHHHHcCC------------------------CEEEEecCC-----------
Confidence 345799999999987665443211100 000000000
Q ss_pred hhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccc-cccCchhhHHHHHHhhC-CCc
Q psy16310 469 ILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKIL-CKHDEKDSYLYYFILQH-PGR 546 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~l~~~l~~~-~~~ 546 (1493)
......+...... .....+...+..++... .++
T Consensus 248 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 282 (414)
T 3eiq_A 248 ---------------------------------------------ELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQ 282 (414)
T ss_dssp ---------------------------------------------CCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSS
T ss_pred ---------------------------------------------ccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCc
Confidence 0000000011111 12233556666666654 479
Q ss_pred EEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChH
Q psy16310 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626 (1493)
Q Consensus 547 ~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~ 626 (1493)
+||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+..
T Consensus 283 ~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~ 362 (414)
T 3eiq_A 283 AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRE 362 (414)
T ss_dssp CEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTH
T ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 627 IYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 627 ~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
.|+||+||+||.|+.|.|++|+++.+...+..+..
T Consensus 363 ~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~ 397 (414)
T 3eiq_A 363 NYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIET 397 (414)
T ss_dssp HHHHHSCCC-------CEEEEECSTHHHHHHHHHH
T ss_pred HhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHH
Confidence 99999999999999999999999988777666543
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-46 Score=475.61 Aligned_cols=365 Identities=27% Similarity=0.445 Sum_probs=278.9
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHhhhhhhhc-cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHH
Q psy16310 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 235 (1493)
Q Consensus 157 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~-~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 235 (1493)
.|++.++++|...||..|+|+|.++|+.++. .++|+|++||||||||++|++|+++++.....
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~---------------- 141 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF---------------- 141 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT----------------
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc----------------
Confidence 3999999999999999999999999996554 47899999999999999999999998865321
Q ss_pred HHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcC----CCCeEEEEEEcCCCHHHHHHHh-cCCC
Q psy16310 236 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK----YTPVKVACVVGGMSTEKQLRIL-NKCP 310 (1493)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~----~~~i~v~~~~G~~~~~~~~~~l-~~~~ 310 (1493)
....++++|||+||++||.|+++.+..+.. ...+.+..++|+.....++..+ ..++
T Consensus 142 -------------------~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 202 (563)
T 3i5x_A 142 -------------------DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRP 202 (563)
T ss_dssp -------------------SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCC
T ss_pred -------------------cccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCC
Confidence 112346799999999999999999988643 2346788899999888877666 4478
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+|+|+||++|.+++.+.. ...+.++++|||||||+|++++|.+.+..++..+.....
T Consensus 203 ~Iiv~Tp~~l~~~l~~~~--~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~--------------------- 259 (563)
T 3i5x_A 203 NIVIATPGRLIDVLEKYS--NKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS--------------------- 259 (563)
T ss_dssp SEEEECHHHHHHHHHHHH--HHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS---------------------
T ss_pred CEEEECcHHHHHHHHhcc--ccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccc---------------------
Confidence 999999999999887542 123567999999999999999999999999887754311
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
.....+|+++||||+++.+..+............. .......
T Consensus 260 -----~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~----------------------~~~~~~~----------- 301 (563)
T 3i5x_A 260 -----KSADNIKTLLFSATLDDKVQKLANNIMNKKECLFL----------------------DTVDKNE----------- 301 (563)
T ss_dssp -----SCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEE----------------------ESSCSSS-----------
T ss_pred -----cCccCceEEEEEccCCHHHHHHHHHhcCCCceEEE----------------------eccCCCC-----------
Confidence 11346799999999998766544321110000000 0000000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccccc-Cc----hhhHHHHHHh--hC
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH-DE----KDSYLYYFIL--QH 543 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----k~~~l~~~l~--~~ 543 (1493)
+ .....+......+.. .. ....+...+. ..
T Consensus 302 ----------------------------------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 338 (563)
T 3i5x_A 302 ----------------------------------P---------EAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDS 338 (563)
T ss_dssp ----------------------------------C---------SSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTT
T ss_pred ----------------------------------c---------cccccCceEEEECchhHhhHHHHHHHHHHHHhhcCC
Confidence 0 000000000000000 00 1112222222 23
Q ss_pred CCcEEEEecchhhHHHHHHHHHhc---CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEec
Q psy16310 544 PGRTLVFCNSISSVKRLTQLLTML---KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620 (1493)
Q Consensus 544 ~~~~IIF~~s~~~a~~L~~~L~~~---~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd 620 (1493)
.+++||||+|+..|+.++..|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+||
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~ 418 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIG 418 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEES
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEEC
Confidence 579999999999999999999887 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 621 VPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 621 ~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
+|.++..|+||+|||||+|+.|.|++|+++.|...+..+.
T Consensus 419 ~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~ 458 (563)
T 3i5x_A 419 VPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 458 (563)
T ss_dssp CCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHH
T ss_pred CCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHH
Confidence 9999999999999999999999999999999887777664
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-47 Score=465.61 Aligned_cols=360 Identities=26% Similarity=0.429 Sum_probs=168.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
...|+++++++.++++|...||..|+|+|.++++. +..++++++++|||+|||++|++|+++.+..
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~------------- 85 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMP-IIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------------- 85 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHH-HHHTCCEEECCCSSHHHHHHHHHHHHHHCCT-------------
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhCCCCEEEECCCCChHHHHHHHHHHHHhhc-------------
Confidence 35699999999999999999999999999999985 4467899999999999999999999987632
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
...++++||++||++|+.|+++.+..++...++++..++||.....+...+. .
T Consensus 86 --------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~ 138 (394)
T 1fuu_A 86 --------------------------SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-D 138 (394)
T ss_dssp --------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-H
T ss_pred --------------------------cCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-C
Confidence 1245579999999999999999999999888999999999998877665554 5
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|+|+||++|.+.+..+.. .+.++++||+||||++.++++...+..++..+ +...|++++|||+++.+...
T Consensus 139 ~~i~v~T~~~l~~~~~~~~~---~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~-----~~~~~~i~~SAT~~~~~~~~ 210 (394)
T 1fuu_A 139 AQIVVGTPGRVFDNIQRRRF---RTDKIKMFILDEADEMLSSGFKEQIYQIFTLL-----PPTTQVVLLSATMPNDVLEV 210 (394)
T ss_dssp CSEEEECHHHHHHHHHTTSS---CCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS-----CTTCEEEEECSSCCHHHHHH
T ss_pred CCEEEECHHHHHHHHHhCCc---chhhCcEEEEEChHHhhCCCcHHHHHHHHHhC-----CCCceEEEEEEecCHHHHHH
Confidence 79999999999999886543 35678999999999999999999999888876 36789999999999776554
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccc-hhhHHHHHHHh-CCCcEEEEe
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE-KDSYLYYFILQ-HPGRTLVFC 1084 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~-~~~~~IVF~ 1084 (1493)
...... .+..+...........+.+.+..+.... +...+..++.. ..+++||||
T Consensus 211 ~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~ 266 (394)
T 1fuu_A 211 TTKFMR------------------------NPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFC 266 (394)
T ss_dssp HHHHCC------------------------SCEEEEECC-----------------------------------------
T ss_pred HHHhcC------------------------CCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEE
Confidence 432211 1111111111111112222222222221 33334444333 357899999
Q ss_pred cchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHH
Q psy16310 1085 NSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHR 1164 (1493)
Q Consensus 1085 ~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr 1164 (1493)
+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.+...|+||
T Consensus 267 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr 346 (394)
T 1fuu_A 267 NTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHR 346 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCCeEEEEecCCCHHHHHHHHHhcccc
Q psy16310 1165 SGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1165 ~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~ 1199 (1493)
+||+||.|+.|.|++|+++.+...+..+.+.++..
T Consensus 347 ~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~ 381 (394)
T 1fuu_A 347 IGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQ 381 (394)
T ss_dssp -----------------------------------
T ss_pred cCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCc
Confidence 99999999999999999999988888777766543
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=479.75 Aligned_cols=359 Identities=26% Similarity=0.455 Sum_probs=157.0
Q ss_pred cccccccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcc-CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCC
Q psy16310 144 EDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPT 222 (1493)
Q Consensus 144 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~ 222 (1493)
+.+.....+|.+++|++.++++|..+||..|+|+|.+++|.++.+ ++|+|++||||||||++|++|+++++..
T Consensus 85 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~------ 158 (479)
T 3fmp_B 85 NSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ 158 (479)
T ss_dssp TSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT------
T ss_pred CCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh------
Confidence 334455678999999999999999999999999999999965543 4899999999999999999999866522
Q ss_pred CccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHH
Q psy16310 223 EEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEK 301 (1493)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~ 301 (1493)
...++++|||+||++||.|+++.+..+.... ++.+....|+.....
T Consensus 159 ---------------------------------~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (479)
T 3fmp_B 159 ---------------------------------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER 205 (479)
T ss_dssp ---------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT
T ss_pred ---------------------------------cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc
Confidence 2334579999999999999999999987753 577777777754332
Q ss_pred HHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhh-cCChhhHHHHHHhhccccCCCccccccccC
Q psy16310 302 QLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTMIESG 380 (1493)
Q Consensus 302 ~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-~~~~~~l~~il~~l~~~~~~~~~~~~~~~~ 380 (1493)
. ....++|+|+||++|++++.+.. ...+.++++|||||||++++ .++...+..++..+
T Consensus 206 ~---~~~~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~---------------- 264 (479)
T 3fmp_B 206 G---QKISEQIVIGTPGTVLDWCSKLK--FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML---------------- 264 (479)
T ss_dssp T---CCCCCSEEEECHHHHHHHHTTSC--CCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTS----------------
T ss_pred c---ccCCCCEEEECchHHHHHHHhcC--CcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhC----------------
Confidence 2 13356899999999999986532 22356899999999999987 46666666555433
Q ss_pred CcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhcc
Q psy16310 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGI 460 (1493)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (1493)
+..+|+++||||++..+..+...... .+..+........
T Consensus 265 -----------------~~~~~~i~~SAT~~~~~~~~~~~~~~------------------------~~~~i~~~~~~~~ 303 (479)
T 3fmp_B 265 -----------------PRNCQMLLFSATFEDSVWKFAQKVVP------------------------DPNVIKLKREEET 303 (479)
T ss_dssp -----------------CTTSEEEEEESCCCHHHHHHHHHHSS------------------------SEEEEEEC-----
T ss_pred -----------------CccceEEEEeCCCCHHHHHHHHHHcC------------------------CCeEEeccccccC
Confidence 34579999999999876554431110 0100000000000
Q ss_pred ccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccc-cCchhhHHHHH
Q psy16310 461 TKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCK-HDEKDSYLYYF 539 (1493)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~ 539 (1493)
. .........+. ...+...+..+
T Consensus 304 ~--------------------------------------------------------~~~~~~~~~~~~~~~~~~~l~~~ 327 (479)
T 3fmp_B 304 L--------------------------------------------------------DTIKQYYVLCSSRDEKFQALCNL 327 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c--------------------------------------------------------CCceEEEEEeCCHHHHHHHHHHH
Confidence 0 00000000111 11223333333
Q ss_pred Hhh-CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE
Q psy16310 540 ILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618 (1493)
Q Consensus 540 l~~-~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~ 618 (1493)
+.. ..+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+
T Consensus 328 ~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~ 407 (479)
T 3fmp_B 328 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 407 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE
Confidence 332 2468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC------CChHHHHHHHhccccCCCCCeEEEEecCCc-chhhhhh
Q psy16310 619 YHVP------RTSEIYIHRSGRTARANNEGLTVVLIESDE-IPLKTKF 659 (1493)
Q Consensus 619 yd~P------~s~~~yiQR~GRagR~g~~G~~i~l~~~~e-~~~~~~l 659 (1493)
||+| .+...|+||+|||||+|+.|.|++|+++.+ ...+..+
T Consensus 408 ~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i 455 (479)
T 3fmp_B 408 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRI 455 (479)
T ss_dssp ------------------------------------------------
T ss_pred ecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHH
Confidence 9999 467899999999999999999999998765 4444444
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-45 Score=441.45 Aligned_cols=350 Identities=32% Similarity=0.537 Sum_probs=288.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|+++++++.++++|.+.||..|+|+|.++++.++.+++++++++|||||||++|++|++..+..
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-------------- 71 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------------- 71 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS--------------
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc--------------
Confidence 469999999999999999999999999999999666555899999999999999999999876521
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~ 310 (1493)
..+.++||++||++|+.|+++.+..+....++.+..++|+.....+...+. .+
T Consensus 72 --------------------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~ 124 (367)
T 1hv8_A 72 --------------------------NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NA 124 (367)
T ss_dssp --------------------------SSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TC
T ss_pred --------------------------cCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CC
Confidence 234679999999999999999999998888899999999998877766655 57
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+|+|+||++|.+.+..+... +.++++||+||||++.++++...+..++..+
T Consensus 125 ~iiv~T~~~l~~~~~~~~~~---~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~-------------------------- 175 (367)
T 1hv8_A 125 NIVVGTPGRILDHINRGTLN---LKNVKYFILDEADEMLNMGFIKDVEKILNAC-------------------------- 175 (367)
T ss_dssp SEEEECHHHHHHHHHTTCSC---TTSCCEEEEETHHHHHTTTTHHHHHHHHHTS--------------------------
T ss_pred CEEEecHHHHHHHHHcCCcc---cccCCEEEEeCchHhhhhchHHHHHHHHHhC--------------------------
Confidence 99999999999998865443 4578999999999999999888888877654
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
....+++++|||+++.+...+...... ......
T Consensus 176 -------~~~~~~i~~SAT~~~~~~~~~~~~~~~------------------------~~~~~~---------------- 208 (367)
T 1hv8_A 176 -------NKDKRILLFSATMPREILNLAKKYMGD------------------------YSFIKA---------------- 208 (367)
T ss_dssp -------CSSCEEEEECSSCCHHHHHHHHHHCCS------------------------EEEEEC----------------
T ss_pred -------CCCceEEEEeeccCHHHHHHHHHHcCC------------------------CeEEEe----------------
Confidence 344789999999987654433210000 000000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 550 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF 550 (1493)
.....+......+....+...+..++....+++|||
T Consensus 209 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lvf 244 (367)
T 1hv8_A 209 --------------------------------------------KINANIEQSYVEVNENERFEALCRLLKNKEFYGLVF 244 (367)
T ss_dssp --------------------------------------------CSSSSSEEEEEECCGGGHHHHHHHHHCSTTCCEEEE
T ss_pred --------------------------------------------cCCCCceEEEEEeChHHHHHHHHHHHhcCCCcEEEE
Confidence 000011111222333456667777777777899999
Q ss_pred ecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHH
Q psy16310 551 CNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630 (1493)
Q Consensus 551 ~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQ 630 (1493)
|+++..++.++..|...++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.++..|+|
T Consensus 245 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q 324 (367)
T 1hv8_A 245 CKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMH 324 (367)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHH
T ss_pred ECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 631 RSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 631 R~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
|+||+||.|+.|.|++++++.|...+..+..
T Consensus 325 ~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~ 355 (367)
T 1hv8_A 325 RIGRTGRAGKKGKAISIINRREYKKLRYIER 355 (367)
T ss_dssp HSTTTCCSSSCCEEEEEECTTSHHHHHHHHH
T ss_pred cccccccCCCccEEEEEEcHHHHHHHHHHHH
Confidence 9999999999999999999988877766643
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=452.05 Aligned_cols=357 Identities=27% Similarity=0.456 Sum_probs=274.2
Q ss_pred cccccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcc-CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCc
Q psy16310 146 MFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 224 (1493)
Q Consensus 146 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~ 224 (1493)
+.....+|+++++++.++++|.+.||..|+|+|.++++.++.+ +++++++||||||||++|++|+++.+..
T Consensus 20 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-------- 91 (412)
T 3fht_A 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-------- 91 (412)
T ss_dssp TTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT--------
T ss_pred CccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh--------
Confidence 3455678999999999999999999999999999999965543 4899999999999999999999977632
Q ss_pred cCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHHHH
Q psy16310 225 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQL 303 (1493)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~~~ 303 (1493)
...++++|||+||++||.|+++.+..+.... ++.+....|+......
T Consensus 92 -------------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 139 (412)
T 3fht_A 92 -------------------------------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG- 139 (412)
T ss_dssp -------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT-
T ss_pred -------------------------------cCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh-
Confidence 1344579999999999999999999988764 6888888887654322
Q ss_pred HHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhh-cCChhhHHHHHHhhccccCCCccccccccCCc
Q psy16310 304 RILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTMIESGHF 382 (1493)
Q Consensus 304 ~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~ 382 (1493)
....++|+|+||++|.+++.... ...+.++++|||||||++++ .++...+..++..+
T Consensus 140 --~~~~~~ivv~T~~~l~~~~~~~~--~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~------------------ 197 (412)
T 3fht_A 140 --QKISEQIVIGTPGTVLDWCSKLK--FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML------------------ 197 (412)
T ss_dssp --CCCCCSEEEECHHHHHHHHTTSC--SSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTS------------------
T ss_pred --hcCCCCEEEECchHHHHHHHhcC--CcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhC------------------
Confidence 13457999999999999886422 12345899999999999987 56766666666544
Q ss_pred chhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhcccc
Q psy16310 383 PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITK 462 (1493)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (1493)
+...|++++|||+++.+..+....... +.........
T Consensus 198 ---------------~~~~~~i~~SAT~~~~~~~~~~~~~~~------------------------~~~~~~~~~~---- 234 (412)
T 3fht_A 198 ---------------PRNCQMLLFSATFEDSVWKFAQKVVPD------------------------PNVIKLKREE---- 234 (412)
T ss_dssp ---------------CTTCEEEEEESCCCHHHHHHHHHHSSS------------------------CEEECCCGGG----
T ss_pred ---------------CCCceEEEEEeecCHHHHHHHHHhcCC------------------------CeEEeecccc----
Confidence 345799999999998765544211100 0000000000
Q ss_pred ccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccc-ccCchhhHHHHHHh
Q psy16310 463 TLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILC-KHDEKDSYLYYFIL 541 (1493)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~ 541 (1493)
.....+......+ ....+...+..++.
T Consensus 235 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (412)
T 3fht_A 235 ----------------------------------------------------ETLDTIKQYYVLCSSRDEKFQALCNLYG 262 (412)
T ss_dssp ----------------------------------------------------SSCTTEEEEEEECSSHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------ccccCceEEEEEcCChHHHHHHHHHHHh
Confidence 0000001111111 12234455555554
Q ss_pred h-CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEec
Q psy16310 542 Q-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620 (1493)
Q Consensus 542 ~-~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd 620 (1493)
. ..+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||
T Consensus 263 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 342 (412)
T 3fht_A 263 AITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFD 342 (412)
T ss_dssp HHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESS
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEEC
Confidence 4 357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------CChHHHHHHHhccccCCCCCeEEEEecCCc-chhhhhh
Q psy16310 621 VP------RTSEIYIHRSGRTARANNEGLTVVLIESDE-IPLKTKF 659 (1493)
Q Consensus 621 ~P------~s~~~yiQR~GRagR~g~~G~~i~l~~~~e-~~~~~~l 659 (1493)
+| .+...|+||+||+||.|..|.|++|+++.+ ...+..+
T Consensus 343 ~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i 388 (412)
T 3fht_A 343 LPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRI 388 (412)
T ss_dssp CCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHH
T ss_pred CCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHH
Confidence 99 577999999999999999999999998764 3444433
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-45 Score=445.18 Aligned_cols=347 Identities=27% Similarity=0.497 Sum_probs=276.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|+++++++.++++|..+||..|+|+|.++++ .+..++|+++++|||+|||++|++|++..+..
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-------------- 72 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIP-QAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-------------- 72 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHH-HHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC--------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc--------------
Confidence 469999999999999999999999999999998 55578999999999999999999999876521
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHHHHHHhcC-
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNK- 308 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~~~~~l~~- 308 (1493)
...+.++||++||++|+.|+.+.+..+.... ++++..++|+.....+...+..
T Consensus 73 -------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 127 (391)
T 1xti_A 73 -------------------------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 127 (391)
T ss_dssp -------------------------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHS
T ss_pred -------------------------cCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcC
Confidence 1234579999999999999999999988765 7999999999988777666654
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhc-CChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~-~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
.++|+|+||++|.+++...... +.++++|||||||+++++ ++...+..++...
T Consensus 128 ~~~iiv~T~~~l~~~~~~~~~~---~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~----------------------- 181 (391)
T 1xti_A 128 CPHIVVGTPGRILALARNKSLN---LKHIKHFILDECDKMLEQLDMRRDVQEIFRMT----------------------- 181 (391)
T ss_dssp CCSEEEECHHHHHHHHHTTSSC---CTTCSEEEECSHHHHTSSHHHHHHHHHHHHTS-----------------------
T ss_pred CCCEEEECHHHHHHHHHcCCcc---ccccCEEEEeCHHHHhhccchHHHHHHHHhhC-----------------------
Confidence 4799999999999988865543 558899999999999874 5555666665433
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTES 467 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1493)
+...|++++|||+++.+...+...... +.......
T Consensus 182 ----------~~~~~~i~~SAT~~~~~~~~~~~~~~~------------------------~~~~~~~~----------- 216 (391)
T 1xti_A 182 ----------PHEKQVMMFSATLSKEIRPVCRKFMQD------------------------PMEIFVDD----------- 216 (391)
T ss_dssp ----------CSSSEEEEEESSCCSTHHHHHHHHCSS------------------------CEEEECCC-----------
T ss_pred ----------CCCceEEEEEeeCCHHHHHHHHHHcCC------------------------CeEEEecC-----------
Confidence 345799999999987655443211100 00000000
Q ss_pred hhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC-CCc
Q psy16310 468 KILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PGR 546 (1493)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~ 546 (1493)
.. ......+......+....+...+..++... .++
T Consensus 217 ------~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 252 (391)
T 1xti_A 217 ------ET--------------------------------------KLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQ 252 (391)
T ss_dssp ------CC--------------------------------------CCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSE
T ss_pred ------cc--------------------------------------ccCcccceEEEEEcCchhHHHHHHHHHHhcCCCc
Confidence 00 000001111122223344556666666554 479
Q ss_pred EEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChH
Q psy16310 547 TLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSE 626 (1493)
Q Consensus 547 ~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~ 626 (1493)
+||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.++.
T Consensus 253 ~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~ 332 (391)
T 1xti_A 253 VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSD 332 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHH
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 627 IYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 627 ~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
.|+||+||+||.|..|.|++++++.+
T Consensus 333 ~~~Qr~GR~~R~g~~g~~~~~~~~~~ 358 (391)
T 1xti_A 333 TYLHRVARAGRFGTKGLAITFVSDEN 358 (391)
T ss_dssp HHHHHHCBCSSSCCCCEEEEEECSHH
T ss_pred HHHHhcccccCCCCceEEEEEEcccc
Confidence 99999999999999999999998764
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=442.57 Aligned_cols=344 Identities=24% Similarity=0.430 Sum_probs=269.4
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccC--CcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCC
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 227 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~--~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 227 (1493)
..+|++++|++.++++|.+.||..|+|+|.++++.++ .+ ++++++||||||||++|++|++.++..
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~----------- 71 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLL-HNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP----------- 71 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-CSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-----------
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCCeEEEECCCCCcHHHHHHHHHHHHhcc-----------
Confidence 3579999999999999999999999999999999555 44 899999999999999999999976632
Q ss_pred CccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc
Q psy16310 228 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 307 (1493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~ 307 (1493)
...+.++||++||++|+.|+++.+..++...++.+...+|+...... .
T Consensus 72 ----------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 119 (395)
T 3pey_A 72 ----------------------------EDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----Q 119 (395)
T ss_dssp ----------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----C
T ss_pred ----------------------------CCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----c
Confidence 12446799999999999999999999998888888888887543221 3
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhh-cCChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
.+++|+|+||++|.+++...... +.++++|||||||++.+ .++...+..++..+
T Consensus 120 ~~~~iiv~T~~~l~~~~~~~~~~---~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~---------------------- 174 (395)
T 3pey_A 120 INAQVIVGTPGTVLDLMRRKLMQ---LQKIKIFVLDEADNMLDQQGLGDQCIRVKRFL---------------------- 174 (395)
T ss_dssp BCCSEEEECHHHHHHHHHTTCBC---CTTCCEEEEETHHHHHHSTTHHHHHHHHHHTS----------------------
T ss_pred CCCCEEEEcHHHHHHHHHcCCcc---cccCCEEEEEChhhhcCccccHHHHHHHHHhC----------------------
Confidence 46799999999999998765443 55789999999999987 46666666665443
Q ss_pred hhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccch
Q psy16310 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 466 (1493)
Q Consensus 387 ~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1493)
+...|++++|||+++.+.......... +.........
T Consensus 175 -----------~~~~~~i~~SAT~~~~~~~~~~~~~~~------------------------~~~~~~~~~~-------- 211 (395)
T 3pey_A 175 -----------PKDTQLVLFSATFADAVRQYAKKIVPN------------------------ANTLELQTNE-------- 211 (395)
T ss_dssp -----------CTTCEEEEEESCCCHHHHHHHHHHSCS------------------------CEEECCCGGG--------
T ss_pred -----------CCCcEEEEEEecCCHHHHHHHHHhCCC------------------------CeEEEccccc--------
Confidence 344799999999987765544211100 0000000000
Q ss_pred hhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccc-ccCchhhHHHHHHhhC-C
Q psy16310 467 SKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILC-KHDEKDSYLYYFILQH-P 544 (1493)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~-~ 544 (1493)
............+ ....+...+..++... .
T Consensus 212 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 243 (395)
T 3pey_A 212 ------------------------------------------------VNVDAIKQLYMDCKNEADKFDVLTELYGLMTI 243 (395)
T ss_dssp ------------------------------------------------CSCTTEEEEEEECSSHHHHHHHHHHHHTTTTS
T ss_pred ------------------------------------------------cccccccEEEEEcCchHHHHHHHHHHHHhccC
Confidence 0000000001111 1223444444544443 4
Q ss_pred CcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCC-
Q psy16310 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPR- 623 (1493)
Q Consensus 545 ~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~- 623 (1493)
+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+|++||+||+|.
T Consensus 244 ~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~ 323 (395)
T 3pey_A 244 GSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTL 323 (395)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBC
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -----ChHHHHHHHhccccCCCCCeEEEEecCCcc
Q psy16310 624 -----TSEIYIHRSGRTARANNEGLTVVLIESDEI 653 (1493)
Q Consensus 624 -----s~~~yiQR~GRagR~g~~G~~i~l~~~~e~ 653 (1493)
++..|+||+||+||.|..|.|++++.+.+.
T Consensus 324 ~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 358 (395)
T 3pey_A 324 ANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358 (395)
T ss_dssp TTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH
T ss_pred CcCCCCHHHhhHhccccccCCCCceEEEEEechHH
Confidence 999999999999999999999999987543
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-45 Score=457.21 Aligned_cols=340 Identities=17% Similarity=0.207 Sum_probs=266.9
Q ss_pred cccCCCCHHHHHHHHH-CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcch
Q psy16310 770 WVKFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848 (1493)
Q Consensus 770 f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 848 (1493)
+.++++++.+.+.|+. +||..|+|+|.++|+. +..|+|+++++|||+|||++|++|++.
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~-il~g~d~lv~~pTGsGKTl~~~lpal~------------------- 82 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINV-TMAGKEVFLVMPTGGGKSLCYQLPALC------------------- 82 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHH-HHTTCCEEEECCTTSCTTHHHHHHHHT-------------------
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHH-HHcCCCEEEEECCCChHHHHHHHHHHH-------------------
Confidence 3468899999999998 6999999999999985 457899999999999999999999973
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH---h--
Q psy16310 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI---L-- 923 (1493)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~---l-- 923 (1493)
.+.++|||+||++|+.|+.+.+..+ ++.+..+.|+......... +
T Consensus 83 --------------------------~~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~ 132 (591)
T 2v1x_A 83 --------------------------SDGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVN 132 (591)
T ss_dssp --------------------------SSSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHC
T ss_pred --------------------------cCCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhc
Confidence 1237999999999999999999987 4888999999887655432 2
Q ss_pred -cCCCcEEEECcHHHH------HHHHhCcCccccccceeEEEecccchhccCC--ChhHHHH--HHHHhcccCCCCCceE
Q psy16310 924 -NKCPHILVATPGRLW------EFIQLGHFHLTELYKINYLVIDETDRMIESG--HFPELKN--ILDRVTMTETSQPRQT 992 (1493)
Q Consensus 924 -~~~~~IlV~TP~rl~------~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~--~~~~l~~--il~~l~~~~~~~~~q~ 992 (1493)
...++|+|+||++|. +.+.. ...+.++++|||||||++++|| |.+.+.. ++... .+..++
T Consensus 133 ~~~~~~Ilv~Tpe~L~~~~~~~~~l~~----~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~-----~~~~~i 203 (591)
T 2v1x_A 133 KNSELKLIYVTPEKIAKSKMFMSRLEK----AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ-----FPNASL 203 (591)
T ss_dssp TTCCCCEEEECHHHHHSCHHHHHHHHH----HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH-----CTTSEE
T ss_pred ccCCCCEEEEChhHhhccHHHHHHHHh----hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHh-----CCCCcE
Confidence 456899999999874 22322 1235678999999999999998 6666544 22222 256899
Q ss_pred EEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEec--ccchhhHHH
Q psy16310 993 FVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK--HDEKDSYLY 1070 (1493)
Q Consensus 993 ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~k~~~l~ 1070 (1493)
++||||++..+...+... +....+..+.. .. ...++........ ...+...+.
T Consensus 204 i~lSAT~~~~v~~~i~~~----------------------l~~~~~~~~~~--~~-~r~nl~~~v~~~~~~~~~~~~~l~ 258 (591)
T 2v1x_A 204 IGLTATATNHVLTDAQKI----------------------LCIEKCFTFTA--SF-NRPNLYYEVRQKPSNTEDFIEDIV 258 (591)
T ss_dssp EEEESSCCHHHHHHHHHH----------------------TTCCSCEEEEC--CC-CCTTEEEEEEECCSSHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHH----------------------hCCCCcEEEec--CC-CCcccEEEEEeCCCcHHHHHHHHH
Confidence 999999997765544222 22222222111 00 0111111111111 123345556
Q ss_pred HHHHh--CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccE
Q psy16310 1071 YFILQ--HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEH 1148 (1493)
Q Consensus 1071 ~~l~~--~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~ 1148 (1493)
.++.. .++++||||+|++.++.++..|...|+.+..|||+|++.+|..+++.|++|+++|||||+++++|||+|+|++
T Consensus 259 ~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~ 338 (591)
T 2v1x_A 259 KLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRF 338 (591)
T ss_dssp HHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEE
T ss_pred HHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccE
Confidence 66654 3678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHH
Q psy16310 1149 VIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193 (1493)
Q Consensus 1149 VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~ 1193 (1493)
||||++|.+.+.|+||+|||||.|+.|.|++|+.+.|...+..+.
T Consensus 339 VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 339 VIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp EEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred EEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 999999999999999999999999999999999988877776653
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-44 Score=427.16 Aligned_cols=334 Identities=34% Similarity=0.506 Sum_probs=271.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHH
Q psy16310 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 854 (1493)
Q Consensus 775 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 854 (1493)
|++.+.++|..+||..|+|+|.++++. +..++++++++|||+|||++|++|+++.
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~-i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------------------ 55 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPL-MLQGKNVVVRAKTGSGKTAAYAIPILEL------------------------ 55 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHHHHHHHHH------------------------
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH-HhcCCCEEEEcCCCCcHHHHHHHHHHhh------------------------
Confidence 578999999999999999999999985 5577899999999999999999998752
Q ss_pred HHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECc
Q psy16310 855 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 934 (1493)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP 934 (1493)
+.++||++||++|+.|+++.++.++...++++..++||.....+...+.. ++|+|+||
T Consensus 56 ---------------------~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~ 113 (337)
T 2z0m_A 56 ---------------------GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATP 113 (337)
T ss_dssp ---------------------TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECH
T ss_pred ---------------------cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECH
Confidence 23599999999999999999999998889999999999988877766654 79999999
Q ss_pred HHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCc
Q psy16310 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQS 1014 (1493)
Q Consensus 935 ~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~ 1014 (1493)
++|.+++..+.. .+.++++||+||||++.++++...+..++..+ +...+++++|||++..+...+.....
T Consensus 114 ~~l~~~~~~~~~---~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~-----~~~~~~~~~SAT~~~~~~~~~~~~~~-- 183 (337)
T 2z0m_A 114 GRLLDLWSKGVI---DLSSFEIVIIDEADLMFEMGFIDDIKIILAQT-----SNRKITGLFSATIPEEIRKVVKDFIT-- 183 (337)
T ss_dssp HHHHHHHHTTSC---CGGGCSEEEEESHHHHHHTTCHHHHHHHHHHC-----TTCSEEEEEESCCCHHHHHHHHHHSC--
T ss_pred HHHHHHHHcCCc---chhhCcEEEEEChHHhhccccHHHHHHHHhhC-----CcccEEEEEeCcCCHHHHHHHHHhcC--
Confidence 999998876543 35678999999999999999999998888776 35688999999999876554432111
Q ss_pred CcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH-hCCCcEEEEecchhhHHHH
Q psy16310 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL-QHPGRTLVFCNSISSVKRL 1093 (1493)
Q Consensus 1015 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~~~~~IVF~~s~~~~~~l 1093 (1493)
.+..+... .....+...+..+....+ .....+. ..++++||||+++..++.+
T Consensus 184 ----------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lvf~~~~~~~~~l 236 (337)
T 2z0m_A 184 ----------------------NYEEIEAC---IGLANVEHKFVHVKDDWR--SKVQALRENKDKGVIVFVRTRNRVAKL 236 (337)
T ss_dssp ----------------------SCEEEECS---GGGGGEEEEEEECSSSSH--HHHHHHHTCCCSSEEEECSCHHHHHHH
T ss_pred ----------------------Cceeeecc---cccCCceEEEEEeChHHH--HHHHHHHhCCCCcEEEEEcCHHHHHHH
Confidence 11111111 111223333333333222 2223333 4467999999999999999
Q ss_pred HHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCC
Q psy16310 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANN 1173 (1493)
Q Consensus 1094 ~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~ 1173 (1493)
+..|. .+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.+...|+||+||+||.|+
T Consensus 237 ~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~ 312 (337)
T 2z0m_A 237 VRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGR 312 (337)
T ss_dssp HTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGC
T ss_pred HHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCC
Confidence 98886 57889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCHHHHHHHHHhcc
Q psy16310 1174 EGLTLVLIESDEIPLYIKMFNSLE 1197 (1493)
Q Consensus 1174 ~G~~i~l~~~~e~~~~~~~~~~~~ 1197 (1493)
.|.+++|+. .+...+..+.+.++
T Consensus 313 ~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 313 KGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp CEEEEEEES-SCHHHHHHHC----
T ss_pred CceEEEEEe-CcHHHHHHHHHHhc
Confidence 999999999 78777777765543
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=450.50 Aligned_cols=346 Identities=20% Similarity=0.300 Sum_probs=273.7
Q ss_pred ccccccCCCCHHHHHHHHH-CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCC
Q psy16310 767 MAEWVKFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 845 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 845 (1493)
|.+|++++|++.+.+.|++ +||..|+|+|.++|+. +..|+|+++++|||+|||++|++|++..
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~-il~g~d~lv~apTGsGKTl~~~lp~l~~--------------- 64 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDT-VLSGRDCLVVMPTGGGKSLCYQIPALLL--------------- 64 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHH-HHTTCCEEEECSCHHHHHHHHHHHHHHS---------------
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHH-HHcCCCEEEECCCCcHHHHHHHHHHHHh---------------
Confidence 4679999999999999998 8999999999999985 4577899999999999999999998731
Q ss_pred cchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH----
Q psy16310 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---- 921 (1493)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~---- 921 (1493)
...+|||+|+++|+.|+.+.+..+ ++.+..+.|+........
T Consensus 65 ------------------------------~g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~ 110 (523)
T 1oyw_A 65 ------------------------------NGLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTG 110 (523)
T ss_dssp ------------------------------SSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHH
T ss_pred ------------------------------CCCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHH
Confidence 136899999999999999999886 478888988887655432
Q ss_pred HhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCC--ChhHHHHHHHHhcccCCCCCceEEEEeccc
Q psy16310 922 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTFVFSATL 999 (1493)
Q Consensus 922 ~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~--~~~~l~~il~~l~~~~~~~~~q~ll~SATl 999 (1493)
.....++|+|+||++|........ ....++++|||||||++.+|| |.+.+..+...... .+..+++++|||+
T Consensus 111 ~~~~~~~ilv~Tpe~l~~~~~~~~---l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~---~~~~~~i~lSAT~ 184 (523)
T 1oyw_A 111 CRTGQIRLLYIAPERLMLDNFLEH---LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR---FPTLPFMALTATA 184 (523)
T ss_dssp HHHTCCSEEEECHHHHTSTTHHHH---HTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH---CTTSCEEEEESCC
T ss_pred HhcCCCCEEEECHHHHhChHHHHH---HhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh---CCCCCEEEEeCCC
Confidence 234568999999999853211111 123578999999999999988 55554443222111 1458899999999
Q ss_pred ccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhC-CC
Q psy16310 1000 THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH-PG 1078 (1493)
Q Consensus 1000 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~ 1078 (1493)
+..+...+. ..+.+..+..+.... . ..++ .+.......+...+..++... ++
T Consensus 185 ~~~~~~~i~----------------------~~l~~~~~~~~~~~~--~-r~~l--~~~v~~~~~~~~~l~~~l~~~~~~ 237 (523)
T 1oyw_A 185 DDTTRQDIV----------------------RLLGLNDPLIQISSF--D-RPNI--RYMLMEKFKPLDQLMRYVQEQRGK 237 (523)
T ss_dssp CHHHHHHHH----------------------HHHTCCSCEEEECCC--C-CTTE--EEEEEECSSHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHH----------------------HHhCCCCCeEEeCCC--C-CCce--EEEEEeCCCHHHHHHHHHHhcCCC
Confidence 976544332 222233332221110 0 1111 223334456667777777665 46
Q ss_pred cEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCCh
Q psy16310 1079 RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTS 1158 (1493)
Q Consensus 1079 ~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~ 1158 (1493)
++||||+|++.++.++..|...|+.+..|||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||||++|.+.
T Consensus 238 ~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~ 317 (523)
T 1oyw_A 238 SGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI 317 (523)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSH
T ss_pred cEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHh
Q psy16310 1159 EIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS 1195 (1493)
Q Consensus 1159 ~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~ 1195 (1493)
+.|+||+||+||.|..|.|++|+++.|...++.+...
T Consensus 318 ~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 318 ESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp HHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHT
T ss_pred HHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 9999999999999999999999999988888777654
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=449.69 Aligned_cols=355 Identities=26% Similarity=0.433 Sum_probs=165.0
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
...|+++++++.+++.+...||..|+|+|.++++ .+..++|+++++|||||||++|++|+++.+..
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~------------- 85 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIM-PIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------------- 85 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHH-HHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT-------------
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHH-HHhCCCCEEEECCCCChHHHHHHHHHHHHhhc-------------
Confidence 3569999999999999999999999999999998 55578999999999999999999999977632
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
...++++||++||++|+.|+++.+..+....++++..++|+.........+. +
T Consensus 86 --------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~ 138 (394)
T 1fuu_A 86 --------------------------SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-D 138 (394)
T ss_dssp --------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-H
T ss_pred --------------------------cCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-C
Confidence 1245679999999999999999999998888999999999998776655554 5
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
++|+|+||++|.+.+...... +.++++||+||||++.++++...+..++..+
T Consensus 139 ~~i~v~T~~~l~~~~~~~~~~---~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~------------------------- 190 (394)
T 1fuu_A 139 AQIVVGTPGRVFDNIQRRRFR---TDKIKMFILDEADEMLSSGFKEQIYQIFTLL------------------------- 190 (394)
T ss_dssp CSEEEECHHHHHHHHHTTSSC---CTTCCEEEEETHHHHHHTTCHHHHHHHHHHS-------------------------
T ss_pred CCEEEECHHHHHHHHHhCCcc---hhhCcEEEEEChHHhhCCCcHHHHHHHHHhC-------------------------
Confidence 699999999999998865443 4578999999999999999998888888765
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1493)
+...|++++|||+++.+.......... +...............
T Consensus 191 --------~~~~~~i~~SAT~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~----- 233 (394)
T 1fuu_A 191 --------PPTTQVVLLSATMPNDVLEVTTKFMRN------------------------PVRILVKKDELTLEGI----- 233 (394)
T ss_dssp --------CTTCEEEEECSSCCHHHHHHHHHHCCS------------------------CEEEEECC-------------
T ss_pred --------CCCceEEEEEEecCHHHHHHHHHhcCC------------------------CeEEEecCccccCCCc-----
Confidence 344799999999997655433211100 0000000000000000
Q ss_pred hhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcccccccccccccccccccccc-ccCchhhHHHHHHhh-CCCcE
Q psy16310 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILC-KHDEKDSYLYYFILQ-HPGRT 547 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~-~~~~~ 547 (1493)
......+ ....+...+..++.. ..+++
T Consensus 234 ---------------------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 262 (394)
T 1fuu_A 234 ---------------------------------------------------KQFYVNVEEEEYKYECLTDLYDSISVTQA 262 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------eEEEEEcCchhhHHHHHHHHHhcCCCCcE
Confidence 0000000 001122222233322 24689
Q ss_pred EEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHH
Q psy16310 548 LVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEI 627 (1493)
Q Consensus 548 IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~ 627 (1493)
||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.++..
T Consensus 263 lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~ 342 (394)
T 1fuu_A 263 VIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKEN 342 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 628 YIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 628 yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
|+||+||+||.|+.|.|+++++++|...+..+..
T Consensus 343 ~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 376 (394)
T 1fuu_A 343 YIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 376 (394)
T ss_dssp ----------------------------------
T ss_pred HHHHcCcccCCCCCceEEEEEchhHHHHHHHHHH
Confidence 9999999999999999999999998877776644
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=443.92 Aligned_cols=331 Identities=20% Similarity=0.258 Sum_probs=259.6
Q ss_pred HHHHHHH-CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHH
Q psy16310 779 IIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 857 (1493)
Q Consensus 779 l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (1493)
+.+.+++ .|| .|||+|.++|+. +..|+|++++||||||||++|++|++..+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~-i~~~~~~lv~apTGsGKT~~~l~~~~~~~-------------------------- 61 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKR-IVQGKSFTMVAPTGVGKTTFGMMTALWLA-------------------------- 61 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHH-HTTTCCEECCSCSSSSHHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHH-HhcCCCEEEEeCCCCCHHHHHHHHHHHHh--------------------------
Confidence 3445555 366 899999999995 45778999999999999999999988654
Q ss_pred HHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCH---HHHHHHhcCC-CcEEEEC
Q psy16310 858 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMST---EKQLRILNKC-PHILVAT 933 (1493)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~---~~~~~~l~~~-~~IlV~T 933 (1493)
..++++|||+||++||.|+++.++.++. .++++..++||.+. ..+...+..+ ++|+|+|
T Consensus 62 ----------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~T 124 (414)
T 3oiy_A 62 ----------------RKGKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFS 124 (414)
T ss_dssp ----------------TTTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEE
T ss_pred ----------------cCCCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEEC
Confidence 2345799999999999999999999887 88999999999988 5555666554 8999999
Q ss_pred cHHHHHHHHhCcCccccccceeEEEecccchhcc-----------CCChhH-HHHHHHHhcc------cCCCCCceEEEE
Q psy16310 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-----------SGHFPE-LKNILDRVTM------TETSQPRQTFVF 995 (1493)
Q Consensus 934 P~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~-----------~~~~~~-l~~il~~l~~------~~~~~~~q~ll~ 995 (1493)
|++|.+++.. ..+.++++|||||||++.+ ++|.+. +..++..++. .......|+++|
T Consensus 125 p~~l~~~l~~-----~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~ 199 (414)
T 3oiy_A 125 TQFVSKNREK-----LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVS 199 (414)
T ss_dssp HHHHHHCHHH-----HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEES
T ss_pred HHHHHHHHHH-----hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEE
Confidence 9999888763 2355789999999986653 778887 7888877631 111266899999
Q ss_pred ecc-cccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH
Q psy16310 996 SAT-LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL 1074 (1493)
Q Consensus 996 SAT-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~ 1074 (1493)
||| .|..+...+.. ..+. +...........+.+.+..+ .+...+..++.
T Consensus 200 SAT~~~~~~~~~~~~---------------------~~~~------~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~l~ 249 (414)
T 3oiy_A 200 SATAKPRGIRPLLFR---------------------DLLN------FTVGRLVSVARNITHVRISS---RSKEKLVELLE 249 (414)
T ss_dssp SCCSSCCSSTTHHHH---------------------HHHS------CCSSCCCCCCCSEEEEEESS---CCHHHHHHHHH
T ss_pred ecCCCcchhHHHHHH---------------------Hhhc------cCcCccccccccchheeecc---CHHHHHHHHHH
Confidence 999 55443322210 0011 01111112233444444433 45666777777
Q ss_pred hCCCcEEEEecchhhHHHHHHHHHhcCCCcc-ccccCCCHHHHHHHHHHHhcCCCCeEEe----ehhhhccccCCC-ccE
Q psy16310 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPL-PLHASMNQRQRLKNLDRFRDQNNSILLA----TDVAARGLDIPG-IEH 1148 (1493)
Q Consensus 1075 ~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~-~lhg~m~~~~R~~~~~~F~~g~~~VLVa----Tdv~~~GiDip~-v~~ 1148 (1493)
..++++||||+++..|+.++..|...|+.+. .+||+ +|. ++.|++|+++|||| |+++++|+|+|+ |++
T Consensus 250 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~ 323 (414)
T 3oiy_A 250 IFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKY 323 (414)
T ss_dssp HHCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCE
T ss_pred HcCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCE
Confidence 7779999999999999999999999999998 99995 444 99999999999999 999999999999 999
Q ss_pred EEEecCC--CChhHHHHHHhccCCCC----CCCeEEEEecCCCHHHHHHHHHhcc
Q psy16310 1149 VIHYHVP--RTSEIYIHRSGRTARAN----NEGLTLVLIESDEIPLYIKMFNSLE 1197 (1493)
Q Consensus 1149 VI~~d~p--~s~~~yiqr~GR~gR~g----~~G~~i~l~~~~e~~~~~~~~~~~~ 1197 (1493)
||+||+| .+..+|+||+|||||.| +.|.+++|+ .+...+..+.+.++
T Consensus 324 VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 324 VIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 9999999 99999999999999987 589999999 67777777777766
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-43 Score=443.75 Aligned_cols=342 Identities=18% Similarity=0.236 Sum_probs=260.7
Q ss_pred cccCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccch
Q psy16310 154 VKFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLE 232 (1493)
Q Consensus 154 ~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~ 232 (1493)
.++++++.+.+.|.. +||..|+|+|.++|+ ++..|+|+++++|||+|||++|++|++.
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~-~il~g~d~lv~~pTGsGKTl~~~lpal~-------------------- 82 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETIN-VTMAGKEVFLVMPTGGGKSLCYQLPALC-------------------- 82 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHH-HHHTTCCEEEECCTTSCTTHHHHHHHHT--------------------
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHH-HHHcCCCEEEEECCCChHHHHHHHHHHH--------------------
Confidence 468899999999998 599999999999998 5567899999999999999999999972
Q ss_pred HHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH------h
Q psy16310 233 EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI------L 306 (1493)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~------l 306 (1493)
...++|||+||++|+.|+.+.+..+ ++.+..++|+......... .
T Consensus 83 -------------------------~~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~ 133 (591)
T 2v1x_A 83 -------------------------SDGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNK 133 (591)
T ss_dssp -------------------------SSSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCT
T ss_pred -------------------------cCCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcc
Confidence 1247999999999999999999887 6888899999876655332 2
Q ss_pred cCCCCEEEeCcHHHH------HHHHcCCccccccccccEEEEecCchhhhcC--ChhhHHH--HHHhhccccCCCccccc
Q psy16310 307 NKCPHILVATPGRLW------EFIQLGHFHLTELYKINYLVIDETDRMIESG--HFPELKN--ILDRVTMTETSQPRQTM 376 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~------~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~--~~~~l~~--il~~l~~~~~~~~~~~~ 376 (1493)
...++|+|+||++|. +.+.. ...+.++++|||||||++++|+ |.+.+.. ++...
T Consensus 134 ~~~~~Ilv~Tpe~L~~~~~~~~~l~~----~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~------------ 197 (591)
T 2v1x_A 134 NSELKLIYVTPEKIAKSKMFMSRLEK----AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ------------ 197 (591)
T ss_dssp TCCCCEEEECHHHHHSCHHHHHHHHH----HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH------------
T ss_pred cCCCCEEEEChhHhhccHHHHHHHHh----hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHh------------
Confidence 456899999999874 22322 1234578999999999999887 6665543 12111
Q ss_pred cccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhh
Q psy16310 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE 456 (1493)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (1493)
.+..++++||||+++.+...+. .++....+.... .
T Consensus 198 ---------------------~~~~~ii~lSAT~~~~v~~~i~----------------------~~l~~~~~~~~~--~ 232 (591)
T 2v1x_A 198 ---------------------FPNASLIGLTATATNHVLTDAQ----------------------KILCIEKCFTFT--A 232 (591)
T ss_dssp ---------------------CTTSEEEEEESSCCHHHHHHHH----------------------HHTTCCSCEEEE--C
T ss_pred ---------------------CCCCcEEEEecCCCHHHHHHHH----------------------HHhCCCCcEEEe--c
Confidence 2347899999999976544321 111110000000 0
Q ss_pred hhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHH
Q psy16310 457 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 536 (1493)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 536 (1493)
..... .+++.+.. .......+...+
T Consensus 233 ----------------~~~r~-nl~~~v~~--------------------------------------~~~~~~~~~~~l 257 (591)
T 2v1x_A 233 ----------------SFNRP-NLYYEVRQ--------------------------------------KPSNTEDFIEDI 257 (591)
T ss_dssp ----------------CCCCT-TEEEEEEE--------------------------------------CCSSHHHHHHHH
T ss_pred ----------------CCCCc-ccEEEEEe--------------------------------------CCCcHHHHHHHH
Confidence 00000 00000000 000011233445
Q ss_pred HHHHhh--CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCc
Q psy16310 537 YYFILQ--HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIE 614 (1493)
Q Consensus 537 ~~~l~~--~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~ 614 (1493)
..++.. .++++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|+
T Consensus 258 ~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~ 337 (591)
T 2v1x_A 258 VKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVR 337 (591)
T ss_dssp HHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEE
T ss_pred HHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCccccc
Confidence 555543 357899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 615 HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 615 ~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
+||+||+|.|+..|+||+|||||.|.+|.|++|+++.|......+..
T Consensus 338 ~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~ 384 (591)
T 2v1x_A 338 FVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVV 384 (591)
T ss_dssp EEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTT
T ss_pred EEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988877666543
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-43 Score=415.65 Aligned_cols=330 Identities=35% Similarity=0.535 Sum_probs=261.7
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHH
Q psy16310 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 237 (1493)
Q Consensus 158 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 237 (1493)
|++.+.++|.++||..|+|+|.++++ .+..++++++++|||||||++|++|+++.
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~-~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------------------ 55 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIP-LMLQGKNVVVRAKTGSGKTAAYAIPILEL------------------------ 55 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSSHHHHHHHHHHHH------------------------
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHH-HHhcCCCEEEEcCCCCcHHHHHHHHHHhh------------------------
Confidence 57899999999999999999999998 56678899999999999999999998742
Q ss_pred HHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCc
Q psy16310 238 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 317 (1493)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP 317 (1493)
+.++||++||++|+.|+++.+..++...++.+..++|+.....+...+.. ++|+|+||
T Consensus 56 ---------------------~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~ 113 (337)
T 2z0m_A 56 ---------------------GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATP 113 (337)
T ss_dssp ---------------------TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECH
T ss_pred ---------------------cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECH
Confidence 24599999999999999999999988889999999999988877766654 79999999
Q ss_pred HHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCC
Q psy16310 318 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397 (1493)
Q Consensus 318 ~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1493)
++|.+++...... +.++++||+||||++.++++...+..++..+
T Consensus 114 ~~l~~~~~~~~~~---~~~~~~iViDEah~~~~~~~~~~~~~~~~~~--------------------------------- 157 (337)
T 2z0m_A 114 GRLLDLWSKGVID---LSSFEIVIIDEADLMFEMGFIDDIKIILAQT--------------------------------- 157 (337)
T ss_dssp HHHHHHHHTTSCC---GGGCSEEEEESHHHHHHTTCHHHHHHHHHHC---------------------------------
T ss_pred HHHHHHHHcCCcc---hhhCcEEEEEChHHhhccccHHHHHHHHhhC---------------------------------
Confidence 9999988765543 4578999999999999999988888887655
Q ss_pred CCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcc
Q psy16310 398 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKD 477 (1493)
Q Consensus 398 ~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1493)
+...+++++|||+++.+...+...... ....... .. .
T Consensus 158 ~~~~~~~~~SAT~~~~~~~~~~~~~~~------------------------~~~~~~~--~~-~---------------- 194 (337)
T 2z0m_A 158 SNRKITGLFSATIPEEIRKVVKDFITN------------------------YEEIEAC--IG-L---------------- 194 (337)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHSCS------------------------CEEEECS--GG-G----------------
T ss_pred CcccEEEEEeCcCCHHHHHHHHHhcCC------------------------ceeeecc--cc-c----------------
Confidence 334688999999998765443211100 0000000 00 0
Q ss_pred hhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHH-hhCCCcEEEEecchhh
Q psy16310 478 SYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI-LQHPGRTLVFCNSISS 556 (1493)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l-~~~~~~~IIF~~s~~~ 556 (1493)
............. .......+ ...++++||||+++..
T Consensus 195 ----------------------------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lvf~~~~~~ 232 (337)
T 2z0m_A 195 ----------------------------------------ANVEHKFVHVKDD--WRSKVQALRENKDKGVIVFVRTRNR 232 (337)
T ss_dssp ----------------------------------------GGEEEEEEECSSS--SHHHHHHHHTCCCSSEEEECSCHHH
T ss_pred ----------------------------------------CCceEEEEEeChH--HHHHHHHHHhCCCCcEEEEEcCHHH
Confidence 0000000000000 01111222 2346789999999999
Q ss_pred HHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccc
Q psy16310 557 VKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTA 636 (1493)
Q Consensus 557 a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRag 636 (1493)
++.++..|. .+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.++..|+||+||+|
T Consensus 233 ~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~g 308 (337)
T 2z0m_A 233 VAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTG 308 (337)
T ss_dssp HHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBC
T ss_pred HHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccc
Confidence 999998886 5788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEecCCcchhhhhhh
Q psy16310 637 RANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 637 R~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|.|..|.|++++. .|......+.
T Consensus 309 R~g~~g~~~~~~~-~~~~~~~~i~ 331 (337)
T 2z0m_A 309 RMGRKGEAITFIL-NEYWLEKEVK 331 (337)
T ss_dssp GGGCCEEEEEEES-SCHHHHHHHC
T ss_pred cCCCCceEEEEEe-CcHHHHHHHH
Confidence 9999999999998 6666555553
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-43 Score=438.42 Aligned_cols=346 Identities=20% Similarity=0.288 Sum_probs=264.0
Q ss_pred cccccccCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 150 MAEWVKFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
+.+|++++|++.+.+.|.+ .||..|+|+|.++|+ ++..|+|+++++|||||||++|++|++..
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~-~il~g~d~lv~apTGsGKTl~~~lp~l~~--------------- 64 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIID-TVLSGRDCLVVMPTGGGKSLCYQIPALLL--------------- 64 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHH-HHHTTCCEEEECSCHHHHHHHHHHHHHHS---------------
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHH-HHHcCCCEEEECCCCcHHHHHHHHHHHHh---------------
Confidence 3578999999999999998 799999999999998 55578899999999999999999998721
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHH----
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---- 304 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~---- 304 (1493)
...+|||+|+++|+.|+.+.+..+ ++.+..++|+........
T Consensus 65 ------------------------------~g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~ 110 (523)
T 1oyw_A 65 ------------------------------NGLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTG 110 (523)
T ss_dssp ------------------------------SSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHH
T ss_pred ------------------------------CCCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHH
Confidence 136999999999999999999885 678888888877655432
Q ss_pred HhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcC--ChhhHHHHHHhhccccCCCccccccccCCc
Q psy16310 305 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESG--HFPELKNILDRVTMTETSQPRQTMIESGHF 382 (1493)
Q Consensus 305 ~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~--~~~~l~~il~~l~~~~~~~~~~~~~~~~~~ 382 (1493)
...+.++|+|+||++|...... ......++++|||||||++.+++ |.+.+..+......
T Consensus 111 ~~~~~~~ilv~Tpe~l~~~~~~---~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~---------------- 171 (523)
T 1oyw_A 111 CRTGQIRLLYIAPERLMLDNFL---EHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR---------------- 171 (523)
T ss_dssp HHHTCCSEEEECHHHHTSTTHH---HHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH----------------
T ss_pred HhcCCCCEEEECHHHHhChHHH---HHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh----------------
Confidence 2235689999999998532111 11112478999999999999886 55554433211110
Q ss_pred chhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhcccc
Q psy16310 383 PELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITK 462 (1493)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (1493)
.+..+++++|||+++.+...+. .++....+....
T Consensus 172 ---------------~~~~~~i~lSAT~~~~~~~~i~----------------------~~l~~~~~~~~~--------- 205 (523)
T 1oyw_A 172 ---------------FPTLPFMALTATADDTTRQDIV----------------------RLLGLNDPLIQI--------- 205 (523)
T ss_dssp ---------------CTTSCEEEEESCCCHHHHHHHH----------------------HHHTCCSCEEEE---------
T ss_pred ---------------CCCCCEEEEeCCCCHHHHHHHH----------------------HHhCCCCCeEEe---------
Confidence 1246899999999876543211 111111110000
Q ss_pred ccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhh
Q psy16310 463 TLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 542 (1493)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 542 (1493)
... ..+. ..+.......+...+..++..
T Consensus 206 ---------~~~----------------------------~r~~---------------l~~~v~~~~~~~~~l~~~l~~ 233 (523)
T 1oyw_A 206 ---------SSF----------------------------DRPN---------------IRYMLMEKFKPLDQLMRYVQE 233 (523)
T ss_dssp ---------CCC----------------------------CCTT---------------EEEEEEECSSHHHHHHHHHHH
T ss_pred ---------CCC----------------------------CCCc---------------eEEEEEeCCCHHHHHHHHHHh
Confidence 000 0000 000111123344556666665
Q ss_pred C-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecC
Q psy16310 543 H-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 621 (1493)
Q Consensus 543 ~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~ 621 (1493)
. ++++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+||+
T Consensus 234 ~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~ 313 (523)
T 1oyw_A 234 QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI 313 (523)
T ss_dssp TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSC
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECC
Confidence 4 458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhhh
Q psy16310 622 PRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQ 662 (1493)
Q Consensus 622 P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~ 662 (1493)
|.|+..|+||+|||||.|.+|.|++|+++.|......+...
T Consensus 314 p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 314 PRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998877766543
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=433.46 Aligned_cols=352 Identities=17% Similarity=0.224 Sum_probs=254.6
Q ss_pred HCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 785 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 785 ~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
.+|| .|||+|..++|. +..|+ |++|+||+|||++|++|++...+
T Consensus 79 ~lG~-~pt~VQ~~~ip~-ll~G~--Iaea~TGeGKTlaf~LP~~l~aL-------------------------------- 122 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVA-LHDGN--IAEMKTGEGKTLTSTLPVYLNAL-------------------------------- 122 (844)
T ss_dssp HHSC-CCCHHHHHHHHH-HHTTS--EEECCTTSCHHHHHHHHHHHHHT--------------------------------
T ss_pred HcCC-CCcHHHHHhhHH-HhCCC--EEEccCCcHHHHHHHHHHHHHHH--------------------------------
Confidence 4799 999999999994 55776 99999999999999999984332
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHh
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQL 943 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~ 943 (1493)
.+..++||+||++||.|+++.+..++.++++++.+++||.+...+.. ..++||+|||||+| .++|..
T Consensus 123 ----------~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D 190 (844)
T 1tf5_A 123 ----------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRD 190 (844)
T ss_dssp ----------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHH
T ss_pred ----------cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHH
Confidence 12369999999999999999999999999999999999998765433 34689999999999 777765
Q ss_pred CcC---ccccccceeEEEecccchhc-cCC---------------ChhHHHHHHHHhcc----cCCCCCceEE-------
Q psy16310 944 GHF---HLTELYKINYLVIDETDRMI-ESG---------------HFPELKNILDRVTM----TETSQPRQTF------- 993 (1493)
Q Consensus 944 ~~~---~~~~l~~l~~lVlDEah~ll-~~~---------------~~~~l~~il~~l~~----~~~~~~~q~l------- 993 (1493)
+.. ....++.+.++||||||+|+ +++ |+..+..|+..++. .-.+..+|++
T Consensus 191 ~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~ 270 (844)
T 1tf5_A 191 NMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMT 270 (844)
T ss_dssp TTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHH
T ss_pred hhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHH
Confidence 421 12346789999999999998 665 56778888877741 0012467888
Q ss_pred ----------EEeccccc---chHhHHhhhccC--cC---------------cccccCC---CchhHHH-H--hHhccCC
Q psy16310 994 ----------VFSATLTH---SLKNSLNLKKGQ--SK---------------SKKVSKG---DPSIKRL-Q--DLLNIKS 1037 (1493)
Q Consensus 994 ----------l~SATl~~---~~~~~~~~~~~~--~~---------------~~~~~~~---~~~~~~l-~--~~~~~~~ 1037 (1493)
+||||++. .+...+...... .. ...+..+ ...+... . ..+.+..
T Consensus 271 ~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~ 350 (844)
T 1tf5_A 271 KAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQN 350 (844)
T ss_dssp HHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCC
T ss_pred HHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecc
Confidence 99999873 333222111000 00 0000000 0000000 0 0000100
Q ss_pred ---------------------------------------CcEEeccccccccccceeeEEEecccchhhHHHHHHHh---
Q psy16310 1038 ---------------------------------------PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ--- 1075 (1493)
Q Consensus 1038 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--- 1075 (1493)
..++.+.........-....+.+...+|...+...+..
T Consensus 351 e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~ 430 (844)
T 1tf5_A 351 ESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYM 430 (844)
T ss_dssp CEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHH
T ss_pred cccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh
Confidence 01111110000000001123455666788777776653
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCC--------Ccc
Q psy16310 1076 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP--------GIE 1147 (1493)
Q Consensus 1076 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip--------~v~ 1147 (1493)
.+.++||||+|+..++.|+..|...|+++..+||++.+.+|..+.+.|+.| .|+||||+++||+||+ ++.
T Consensus 431 ~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl 508 (844)
T 1tf5_A 431 TGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGL 508 (844)
T ss_dssp HTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSE
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCc
Confidence 367899999999999999999999999999999999988888777667655 6999999999999999 888
Q ss_pred EEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1148 HVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1148 ~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
+||||++|.+.+.|+||+|||||+|.+|.+++|++..|.
T Consensus 509 ~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 509 AVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred EEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 999999999999999999999999999999999998763
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=425.56 Aligned_cols=332 Identities=20% Similarity=0.254 Sum_probs=246.9
Q ss_pred HHHHHHH-CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHH
Q psy16310 162 IIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 240 (1493)
Q Consensus 162 l~~~l~~-~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1493)
+.+.+.+ .|| .|+|+|.++++ .+..++|++++||||||||++|++|++..+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~-~i~~~~~~lv~apTGsGKT~~~l~~~~~~~-------------------------- 61 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAK-RIVQGKSFTMVAPTGVGKTTFGMMTALWLA-------------------------- 61 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHH-HHTTTCCEECCSCSSSSHHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHhcCC-CCCHHHHHHHH-HHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--------------------------
Confidence 3444544 366 79999999999 455788999999999999999999987654
Q ss_pred HHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCH---HHHHHHhcCC-CCEEEeC
Q psy16310 241 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMST---EKQLRILNKC-PHILVAT 316 (1493)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~---~~~~~~l~~~-~~IiV~T 316 (1493)
..++++|||+||++||.|+++.+..++. .++++..++|+.+. ..++..+..+ ++|+|+|
T Consensus 62 ----------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~T 124 (414)
T 3oiy_A 62 ----------------RKGKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFS 124 (414)
T ss_dssp ----------------TTTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEE
T ss_pred ----------------cCCCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEEC
Confidence 2346799999999999999999999887 88999999999988 5556666555 8999999
Q ss_pred cHHHHHHHHcCCccccccccccEEEEecCchhhh-----------cCChhh-HHHHHHhhccccCCCccccccccCCcch
Q psy16310 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-----------SGHFPE-LKNILDRVTMTETSQPRQTMIESGHFPE 384 (1493)
Q Consensus 317 P~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-----------~~~~~~-l~~il~~l~~~~~~~~~~~~~~~~~~~~ 384 (1493)
|++|.+++.. ..+.++++|||||||++.+ ++|.+. +..++..+.....
T Consensus 125 p~~l~~~l~~-----~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~--------------- 184 (414)
T 3oiy_A 125 TQFVSKNREK-----LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKI--------------- 184 (414)
T ss_dssp HHHHHHCHHH-----HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC---------------
T ss_pred HHHHHHHHHH-----hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchh---------------
Confidence 9999888763 2245789999999987654 677777 7777776631100
Q ss_pred hhhhhhhccccCCCCCceEEEEeec-cchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccc
Q psy16310 385 LKNILDRVTMTETSQPRQTFVFSAT-LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKT 463 (1493)
Q Consensus 385 ~~~~~~~~~~~~~~~~~q~il~SAT-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1493)
..........|+++|||| .|..+...+. ..++......
T Consensus 185 -------~~~l~~~~~~~~i~~SAT~~~~~~~~~~~---------------------~~~~~~~~~~------------- 223 (414)
T 3oiy_A 185 -------YERPKNLKPGILVVSSATAKPRGIRPLLF---------------------RDLLNFTVGR------------- 223 (414)
T ss_dssp -------CCCCTTCCCCEEEESSCCSSCCSSTTHHH---------------------HHHHSCCSSC-------------
T ss_pred -------hhhcccCCCceEEEEecCCCcchhHHHHH---------------------HHhhccCcCc-------------
Confidence 000001256799999999 4543321110 0000000000
Q ss_pred cchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhC
Q psy16310 464 LTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 543 (1493)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 543 (1493)
.......+......+ .+...+..++...
T Consensus 224 -------------------------------------------------~~~~~~~i~~~~~~~---~~~~~l~~~l~~~ 251 (414)
T 3oiy_A 224 -------------------------------------------------LVSVARNITHVRISS---RSKEKLVELLEIF 251 (414)
T ss_dssp -------------------------------------------------CCCCCCSEEEEEESS---CCHHHHHHHHHHH
T ss_pred -------------------------------------------------cccccccchheeecc---CHHHHHHHHHHHc
Confidence 000000011111111 3455566667666
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCCcc-ccccCCCHHHHHHHHHHHhcCCCeEEEE----echhhccCCCCC-CcEEE
Q psy16310 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPL-PLHASMNQRQRLKNLDRFRDQNNSILLA----TDVAARGLDIPG-IEHVI 617 (1493)
Q Consensus 544 ~~~~IIF~~s~~~a~~L~~~L~~~~~~~~-~lhg~~~~~~R~~vl~~Fr~g~~~VLVa----Tdv~~rGlDip~-v~~VI 617 (1493)
++++||||+++..|+.++..|...++.+. .+||. +|. ++.|++|+++|||| |+++++|+|+|+ |++||
T Consensus 252 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI 325 (414)
T 3oiy_A 252 RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVI 325 (414)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEE
Confidence 78999999999999999999999999998 99995 333 99999999999999 999999999999 99999
Q ss_pred EecCC--CChHHHHHHHhccccCC----CCCeEEEEecCCcchhhhhh
Q psy16310 618 HYHVP--RTSEIYIHRSGRTARAN----NEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 618 ~yd~P--~s~~~yiQR~GRagR~g----~~G~~i~l~~~~e~~~~~~l 659 (1493)
+||+| .++..|+||+|||||.| +.|.|++|+ .|...+..+
T Consensus 326 ~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l 371 (414)
T 3oiy_A 326 FWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESL 371 (414)
T ss_dssp EESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHH
T ss_pred EECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHH
Confidence 99999 99999999999999988 589999999 454444444
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-43 Score=465.72 Aligned_cols=371 Identities=17% Similarity=0.164 Sum_probs=250.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
..|..+++++.+...+...++..|+|+|.++|+ ++..++|+|++||||||||++|++|++..+.
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~-~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~--------------- 225 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAIS-CIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------------- 225 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHH-HHTTTCCEEEECCSSSHHHHHHHHHHHHHHH---------------
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHH-HHHcCCCEEEECCCCCChHHHHHHHHHHHHh---------------
Confidence 457777888877777777777789999999998 5778899999999999999999999997762
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~ 310 (1493)
.+.++||++||++||.|+++.+..++. .++.++|+... ...+
T Consensus 226 ---------------------------~g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~ 267 (1108)
T 3l9o_A 226 ---------------------------NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDA 267 (1108)
T ss_dssp ---------------------------TTCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSC
T ss_pred ---------------------------cCCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCC
Confidence 345799999999999999999999764 57778888763 3557
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+|+|+||++|.+++..+... +.++++|||||||++.+++|...+..++..+
T Consensus 268 ~IlV~Tpe~L~~~L~~~~~~---l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l-------------------------- 318 (1108)
T 3l9o_A 268 GCLVMTTEILRSMLYRGSEV---MREVAWVIFDEVHYMRDKERGVVWEETIILL-------------------------- 318 (1108)
T ss_dssp SEEEEEHHHHHHHHHHCSSH---HHHEEEEEEETGGGTTSHHHHHHHHHHHHHS--------------------------
T ss_pred CEEEeChHHHHHHHHcCccc---cccCCEEEEhhhhhccccchHHHHHHHHHhc--------------------------
Confidence 99999999999999876543 5589999999999999999999999888766
Q ss_pred hccccCCCCCceEEEEeeccchhhh--hhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLK--NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK 468 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1493)
+..+|+++||||+++... .++..... .+..+. ..... +..+
T Consensus 319 -------~~~~qvl~lSATipn~~e~a~~l~~~~~------------------------~~~~vi-~~~~r-p~pl---- 361 (1108)
T 3l9o_A 319 -------PDKVRYVFLSATIPNAMEFAEWICKIHS------------------------QPCHIV-YTNFR-PTPL---- 361 (1108)
T ss_dssp -------CTTSEEEEEECSCSSCHHHHHHHHHHTC------------------------SCEEEE-EECCC-SSCE----
T ss_pred -------CCCceEEEEcCCCCCHHHHHHHHHhhcC------------------------CCeEEE-ecCCC-cccc----
Confidence 345799999999986422 22111000 000000 00000 0000
Q ss_pred hhhccCCcchhhHHHHhcCCC--cchh--------hHHHhhhhccCCccccccccc-cc---cccccccccccccCchhh
Q psy16310 469 ILCKHDEKDSYLYYFILQHPG--RTLC--------EEIQDLLNIKSPKIVDLTEKI-GI---TKTLTESKILCKHDEKDS 534 (1493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~k~~ 534 (1493)
. .+++..... .... ..+.................. .. ..................
T Consensus 362 --------~---~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 430 (1108)
T 3l9o_A 362 --------Q---HYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIY 430 (1108)
T ss_dssp --------E---EEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHH
T ss_pred --------e---EEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHH
Confidence 0 000000000 0000 000000000000000000000 00 000000000000012222
Q ss_pred HHHHHHhh-CCCcEEEEecchhhHHHHHHHHHhcCC---------------------------------------Ccccc
Q psy16310 535 YLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKC---------------------------------------SPLPL 574 (1493)
Q Consensus 535 ~l~~~l~~-~~~~~IIF~~s~~~a~~L~~~L~~~~~---------------------------------------~~~~l 574 (1493)
.+...+.. ..+++||||+++..|+.++..|...++ +++.+
T Consensus 431 ~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~ 510 (1108)
T 3l9o_A 431 KIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIH 510 (1108)
T ss_dssp HHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEE
T ss_pred HHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeee
Confidence 33334433 356999999999999999998865322 26889
Q ss_pred ccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecC--------CCChHHHHHHHhccccCC--CCCeE
Q psy16310 575 HASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV--------PRTSEIYIHRSGRTARAN--NEGLT 644 (1493)
Q Consensus 575 hg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~--------P~s~~~yiQR~GRagR~g--~~G~~ 644 (1493)
||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+|+. |.++.+|+||+|||||.| ..|+|
T Consensus 511 Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ 590 (1108)
T 3l9o_A 511 HSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIV 590 (1108)
T ss_dssp CSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEE
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999997765 447888999999999999 68999
Q ss_pred EEEecCCc
Q psy16310 645 VVLIESDE 652 (1493)
Q Consensus 645 i~l~~~~e 652 (1493)
++++++..
T Consensus 591 ill~~~~~ 598 (1108)
T 3l9o_A 591 IMMIDEKM 598 (1108)
T ss_dssp EEEECCCC
T ss_pred EEEecCCc
Confidence 99997763
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-42 Score=457.22 Aligned_cols=353 Identities=20% Similarity=0.239 Sum_probs=270.6
Q ss_pred HCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 785 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 785 ~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
..|| +|||+|.++||. +..|+|++++||||||||++|++|++..+
T Consensus 74 ~~gf-~pt~iQ~~ai~~-il~g~dvlv~ApTGSGKTl~~l~~il~~~--------------------------------- 118 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKR-IVQGKSFTMVAPTGVGKTTFGMMTALWLA--------------------------------- 118 (1104)
T ss_dssp HSSS-CCCHHHHHHHHH-HTTTCCEEECCSTTCCHHHHHHHHHHHHH---------------------------------
T ss_pred hcCC-CCCHHHHHHHHH-HHcCCCEEEEeCCCCcHHHHHHHHHHHHH---------------------------------
Confidence 4688 699999999995 45788999999999999998888887654
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCH---HHHHHHhcCC-CcEEEECcHHHHHH
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMST---EKQLRILNKC-PHILVATPGRLWEF 940 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~---~~~~~~l~~~-~~IlV~TP~rl~~~ 940 (1493)
..++++|||+||++||.|+++.++.++ ..++++..++||.+. ..+...+..+ ++|+|+||++|+++
T Consensus 119 ---------~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~ 188 (1104)
T 4ddu_A 119 ---------RKGKKSALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKN 188 (1104)
T ss_dssp ---------TTTCCEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHS
T ss_pred ---------hcCCeEEEEechHHHHHHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHH
Confidence 234579999999999999999999987 778999999999987 6666777665 99999999999888
Q ss_pred HHhCcCccccccceeEEEecccch----------hcc-CCChhH-HHHHHHHhc------ccCCCCCceEEEEecc-ccc
Q psy16310 941 IQLGHFHLTELYKINYLVIDETDR----------MIE-SGHFPE-LKNILDRVT------MTETSQPRQTFVFSAT-LTH 1001 (1493)
Q Consensus 941 l~~~~~~~~~l~~l~~lVlDEah~----------ll~-~~~~~~-l~~il~~l~------~~~~~~~~q~ll~SAT-l~~ 1001 (1493)
+.. ..+.++++|||||||+ |++ +||... +..++..++ .......+|+++|||| .|.
T Consensus 189 l~~-----l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~ 263 (1104)
T 4ddu_A 189 REK-----LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPR 263 (1104)
T ss_dssp HHH-----HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCC
T ss_pred HHh-----hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcH
Confidence 763 2356899999999965 445 899888 888888774 1111257899999999 554
Q ss_pred chHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEE
Q psy16310 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTL 1081 (1493)
Q Consensus 1002 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~I 1081 (1493)
.+...+.. ..+. +.+.........+.+.++.+ ++...+..++...++++|
T Consensus 264 ~~~~~~~~---------------------~~l~------i~v~~~~~~~~~i~~~~~~~---~k~~~L~~ll~~~~~~~L 313 (1104)
T 4ddu_A 264 GIRPLLFR---------------------DLLN------FTVGRLVSVARNITHVRISS---RSKEKLVELLEIFRDGIL 313 (1104)
T ss_dssp SSTTHHHH---------------------HHTC------CCCCBCCCCCCCEEEEEESC---CCHHHHHHHHHHHCSSEE
T ss_pred HHHHHHhh---------------------ccee------EEeccCCCCcCCceeEEEec---CHHHHHHHHHHhcCCCEE
Confidence 43322110 0011 11112222344555555544 466677777777789999
Q ss_pred EEecchhhHHHHHHHHHhcCCCcc-ccccCCCHHHHHHHHHHHhcCCCCeEEe----ehhhhccccCCC-ccEEEEecCC
Q psy16310 1082 VFCNSISSVKRLTQLLTMLKCSPL-PLHASMNQRQRLKNLDRFRDQNNSILLA----TDVAARGLDIPG-IEHVIHYHVP 1155 (1493)
Q Consensus 1082 VF~~s~~~~~~l~~~L~~~~~~~~-~lhg~m~~~~R~~~~~~F~~g~~~VLVa----Tdv~~~GiDip~-v~~VI~~d~p 1155 (1493)
|||+++..|+.++..|...|+.+. .+||+ |.+ +++|++|+++|||| |++++||||+|+ |++|||||+|
T Consensus 314 VF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P 387 (1104)
T 4ddu_A 314 IFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTP 387 (1104)
T ss_dssp EEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCC
T ss_pred EEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCC
Confidence 999999999999999999999998 99993 555 99999999999999 999999999999 9999999999
Q ss_pred C------------------------------------------------------------------------ChhHHHH
Q psy16310 1156 R------------------------------------------------------------------------TSEIYIH 1163 (1493)
Q Consensus 1156 ~------------------------------------------------------------------------s~~~yiq 1163 (1493)
. +..+|+|
T Consensus 388 ~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYih 467 (1104)
T 4ddu_A 388 SMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQ 467 (1104)
T ss_dssp EEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHH
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhc
Confidence 8 7889999
Q ss_pred HHhccCCCCC----CCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHHHH
Q psy16310 1164 RSGRTARANN----EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSI 1225 (1493)
Q Consensus 1164 r~GR~gR~g~----~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~ 1225 (1493)
|+|||||.|. .|.+++++ +|...+..+.+.+....++.-.|+++..+..+.+.++..++.
T Consensus 468 r~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~ 531 (1104)
T 4ddu_A 468 ASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVEESRRR 531 (1104)
T ss_dssp HHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHTCCCEEEGGGCCHHHHHHHHHHHHHH
T ss_pred ccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHhhhcccccccccccCHHHHHHHHhHHHHH
Confidence 9999999654 34555555 777777777777653223444455555556666665555443
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=459.88 Aligned_cols=363 Identities=17% Similarity=0.168 Sum_probs=258.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
..|..+++++.+...+...++..|+|+|.++|+. +..|++++++||||||||++|.+|++..+.
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~-i~~g~dvLV~ApTGSGKTlva~l~i~~~l~--------------- 225 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISC-IDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------------- 225 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHH-HTTTCCEEEECCSSSHHHHHHHHHHHHHHH---------------
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHH-HHcCCCEEEECCCCCChHHHHHHHHHHHHh---------------
Confidence 3577788888888888888888999999999984 678899999999999999999999998762
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~ 927 (1493)
.+.++||++||++|+.|+++.+..++. .+++++|+.+ ....+
T Consensus 226 ---------------------------~g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~-------~~~~~ 267 (1108)
T 3l9o_A 226 ---------------------------NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDIT-------INPDA 267 (1108)
T ss_dssp ---------------------------TTCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCB-------CCCSC
T ss_pred ---------------------------cCCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCccc-------cCCCC
Confidence 235799999999999999999999764 6778888876 33568
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH--h
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK--N 1005 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~--~ 1005 (1493)
+|+|+|||+|.+++..+.. .+.++++|||||||+|.+++|...+..++..+ +...|+++||||+++... .
T Consensus 268 ~IlV~Tpe~L~~~L~~~~~---~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l-----~~~~qvl~lSATipn~~e~a~ 339 (1108)
T 3l9o_A 268 GCLVMTTEILRSMLYRGSE---VMREVAWVIFDEVHYMRDKERGVVWEETIILL-----PDKVRYVFLSATIPNAMEFAE 339 (1108)
T ss_dssp SEEEEEHHHHHHHHHHCSS---HHHHEEEEEEETGGGTTSHHHHHHHHHHHHHS-----CTTSEEEEEECSCSSCHHHHH
T ss_pred CEEEeChHHHHHHHHcCcc---ccccCCEEEEhhhhhccccchHHHHHHHHHhc-----CCCceEEEEcCCCCCHHHHHH
Confidence 9999999999999987653 36689999999999999999999999998887 467999999999987533 3
Q ss_pred HHhhhccCcCcccccCCCchhHHHHhHhcc-CCCcEEe-cccccc--------cccccee---------------eEE--
Q psy16310 1006 SLNLKKGQSKSKKVSKGDPSIKRLQDLLNI-KSPKIVD-LTEKIG--------ITKTLTE---------------SKI-- 1058 (1493)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~-~~~~~~--------~~~~~~~---------------~~~-- 1058 (1493)
++................+. .+...+.. ....... +..... ....+.. ...
T Consensus 340 ~l~~~~~~~~~vi~~~~rp~--pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 417 (1108)
T 3l9o_A 340 WICKIHSQPCHIVYTNFRPT--PLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYK 417 (1108)
T ss_dssp HHHHHTCSCEEEEEECCCSS--CEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----------------------
T ss_pred HHHhhcCCCeEEEecCCCcc--cceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccc
Confidence 33221111100000000000 00000000 0000000 000000 0000000 000
Q ss_pred ----EecccchhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCC------------------------------
Q psy16310 1059 ----LCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCS------------------------------ 1103 (1493)
Q Consensus 1059 ----~~~~~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~------------------------------ 1103 (1493)
..........++..+... .+++||||+++..|+.++..|...++.
T Consensus 418 ~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~ 497 (1108)
T 3l9o_A 418 GGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIK 497 (1108)
T ss_dssp -------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHH
T ss_pred cccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHH
Confidence 000022223334444433 569999999999999999998654322
Q ss_pred ---------ccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCC--------CChhHHHHHHh
Q psy16310 1104 ---------PLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP--------RTSEIYIHRSG 1166 (1493)
Q Consensus 1104 ---------~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p--------~s~~~yiqr~G 1166 (1493)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++.| .+..+|+||+|
T Consensus 498 ~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~G 577 (1108)
T 3l9o_A 498 HILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSG 577 (1108)
T ss_dssp HHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHH
T ss_pred HHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhc
Confidence 6789999999999999999999999999999999999999999999976653 47778999999
Q ss_pred ccCCCC--CCCeEEEEecCC-CHHHHHHHHH
Q psy16310 1167 RTARAN--NEGLTLVLIESD-EIPLYIKMFN 1194 (1493)
Q Consensus 1167 R~gR~g--~~G~~i~l~~~~-e~~~~~~~~~ 1194 (1493)
||||.| ..|.|++++.+. +...+.++..
T Consensus 578 RAGR~G~d~~G~~ill~~~~~~~~~~~~l~~ 608 (1108)
T 3l9o_A 578 RAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 608 (1108)
T ss_dssp HSCCSSSCSSEEEEEEECCCCCHHHHHHHHH
T ss_pred ccCCCCCCCceEEEEEecCCcCHHHHHHHhc
Confidence 999999 689999999876 4445555544
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=423.89 Aligned_cols=396 Identities=17% Similarity=0.206 Sum_probs=256.4
Q ss_pred HCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhh
Q psy16310 168 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 247 (1493)
Q Consensus 168 ~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1493)
.+|| +|||+|..++| +++.|+ |+.|+||+|||++|+||++...+
T Consensus 79 ~lG~-~pt~VQ~~~ip-~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL-------------------------------- 122 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGV-ALHDGN--IAEMKTGEGKTLTSTLPVYLNAL-------------------------------- 122 (844)
T ss_dssp HHSC-CCCHHHHHHHH-HHHTTS--EEECCTTSCHHHHHHHHHHHHHT--------------------------------
T ss_pred HcCC-CCcHHHHHhhH-HHhCCC--EEEccCCcHHHHHHHHHHHHHHH--------------------------------
Confidence 4799 99999999999 566776 99999999999999999984321
Q ss_pred cchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHc
Q psy16310 248 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQL 326 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~ 326 (1493)
.+..|+||+||++||.|+++++..++.++++++++++||.+...+.. ..++||+|+|||+| .++|..
T Consensus 123 ----------~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D 190 (844)
T 1tf5_A 123 ----------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRD 190 (844)
T ss_dssp ----------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHH
T ss_pred ----------cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHH
Confidence 23459999999999999999999999999999999999998765433 34689999999999 677654
Q ss_pred CCc---cccccccccEEEEecCchhh-hcC---------------ChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 327 GHF---HLTELYKINYLVIDETDRMI-ESG---------------HFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 327 ~~~---~~~~l~~i~~lViDEAh~ll-~~~---------------~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
... ....++.+.++||||||+|| +++ |+..+..|+..+.... +
T Consensus 191 ~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~------------~------ 252 (844)
T 1tf5_A 191 NMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEK------------D------ 252 (844)
T ss_dssp TTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSS------------S------
T ss_pred hhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccc------------c------
Confidence 321 12236689999999999998 665 4566777776653200 0
Q ss_pred hhhhccccCCCCCceEE-----------------EEeeccch---hhhhhhhhhcc--ccccccc---------------
Q psy16310 388 ILDRVTMTETSQPRQTF-----------------VFSATLTH---SLKNSLNLKKG--QSKSKKV--------------- 430 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~i-----------------l~SATl~~---~~~~~~~~~~~--~~~~~~~--------------- 430 (1493)
....+..+|++ +||||++. .+...+..... ....-.+
T Consensus 253 ------y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~ 326 (844)
T 1tf5_A 253 ------YTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRL 326 (844)
T ss_dssp ------BCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCB
T ss_pred ------ceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccc
Confidence 00012345555 89999874 33222211000 0000000
Q ss_pred cCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCC-----CcchhhHHHhhhhccCC
Q psy16310 431 SKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHP-----GRTLCEEIQDLLNIKSP 505 (1493)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 505 (1493)
..+..+-.-+.+.+..+.. +.+........ .-.+..++ ..++ ..+.......+...+..
T Consensus 327 m~grr~sdGLhqaieake~--v~I~~e~~t~a-------------~It~q~~f-r~y~kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 327 MKGRRYSEGLHQAIEAKEG--LEIQNESMTLA-------------TITFQNYF-RMYEKLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp CTTCCCSTTHHHHHHHHTT--CCCCCCEEEEE-------------EEEHHHHH-TTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred cCCCccchhhHHHHhhccc--ceecccccccc-------------eeeHHHHH-HHHhhhccCCcccchhHHHHHHHhCC
Confidence 0000000000111000000 00000000000 00011111 0000 00111111222222222
Q ss_pred ccccccccccccccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHH
Q psy16310 506 KIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 582 (1493)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~ 582 (1493)
.+..+..............+.+....|...+...+.. .+.++||||+|+..++.|+..|...|+.+..+||++.+.+
T Consensus 391 ~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rE 470 (844)
T 1tf5_A 391 QVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE 470 (844)
T ss_dssp CEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHH
T ss_pred ceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHH
Confidence 2222111111111111223445556788888777653 3568999999999999999999999999999999998888
Q ss_pred HHHHHHHHhcCCCeEEEEechhhccCCCC--------CCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcc
Q psy16310 583 RLKNLDRFRDQNNSILLATDVAARGLDIP--------GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653 (1493)
Q Consensus 583 R~~vl~~Fr~g~~~VLVaTdv~~rGlDip--------~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~ 653 (1493)
|..+.+.|+.| .||||||+|+||+||+ ++.+||+||+|.+...|+||+|||||+|.+|.+++|++.+|.
T Consensus 471 r~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 471 AQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp HHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 87776667666 6999999999999999 889999999999999999999999999999999999998874
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-41 Score=416.22 Aligned_cols=351 Identities=16% Similarity=0.164 Sum_probs=230.5
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
+|. .|+|+|..++|. +..|+ |+.++||||||++|++|++...+
T Consensus 71 lg~-~p~~VQ~~~i~~-ll~G~--Iaem~TGsGKTlaf~LP~l~~~l--------------------------------- 113 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMV-LNERC--IAEMRTGEGKTLTATLPAYLNAL--------------------------------- 113 (853)
T ss_dssp HSC-CCCHHHHHHHHH-HHSSE--EEECCTTSCHHHHHHHHHHHHHT---------------------------------
T ss_pred cCC-CCChHHHhhccc-ccCCe--eeeecCCchHHHHHHHHHHHHHH---------------------------------
Confidence 464 899999999994 55665 99999999999999999986442
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHhC
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 944 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~~ 944 (1493)
.+.+++||+||++||.|+++.+..++.++++++.+++||.+.... .+..+++|+|||||+| .++|..+
T Consensus 114 ---------~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~ 182 (853)
T 2fsf_A 114 ---------TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDN 182 (853)
T ss_dssp ---------TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHT
T ss_pred ---------cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhh
Confidence 123699999999999999999999999999999999999987533 3344689999999999 7888765
Q ss_pred cC---ccccccceeEEEecccchhc-cCC---------------ChhHHHHHHHHhcccC---------------CCCCc
Q psy16310 945 HF---HLTELYKINYLVIDETDRMI-ESG---------------HFPELKNILDRVTMTE---------------TSQPR 990 (1493)
Q Consensus 945 ~~---~~~~l~~l~~lVlDEah~ll-~~~---------------~~~~l~~il~~l~~~~---------------~~~~~ 990 (1493)
.. ....++++.++|+||||+|+ +.+ |+..+..|+..++... .+..+
T Consensus 183 ~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~r 262 (853)
T 2fsf_A 183 MAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSR 262 (853)
T ss_dssp TCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC------------------------------------------
T ss_pred hhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccc
Confidence 31 11235789999999999998 543 5677888887774210 01245
Q ss_pred eEE------------------------EEeccccc---chHhHHhhhccC--cCcc------------------------
Q psy16310 991 QTF------------------------VFSATLTH---SLKNSLNLKKGQ--SKSK------------------------ 1017 (1493)
Q Consensus 991 q~l------------------------l~SATl~~---~~~~~~~~~~~~--~~~~------------------------ 1017 (1493)
|++ +||||.+. .+...+...... ....
T Consensus 263 qv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~s 342 (853)
T 2fsf_A 263 QVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWS 342 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccc
Confidence 654 89999764 222211100000 0000
Q ss_pred -------------cccCCCchh-----HHHH------------------hHhccCCCcEEeccccccccccceeeEEEec
Q psy16310 1018 -------------KVSKGDPSI-----KRLQ------------------DLLNIKSPKIVDLTEKIGITKTLTESKILCK 1061 (1493)
Q Consensus 1018 -------------~~~~~~~~~-----~~l~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1061 (1493)
.+....... ..+. ....+....++.+.........-....+.+.
T Consensus 343 dGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~ 422 (853)
T 2fsf_A 343 DGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMT 422 (853)
T ss_dssp --------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESS
T ss_pred hhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeC
Confidence 000000000 0000 0000000111111111111111111234556
Q ss_pred ccchhhHHHHHHHh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhh
Q psy16310 1062 HDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138 (1493)
Q Consensus 1062 ~~~k~~~l~~~l~~---~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~ 1138 (1493)
..+|...+...+.. .+.++||||+|+..++.|+..|...|+++.++||++.+.+|..+.++|+.| .|+|||++++
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAg 500 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAG 500 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEeccccc
Confidence 67788888777643 357899999999999999999999999999999999999998899999988 6999999999
Q ss_pred ccccCCCc-------------------------------------cEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEe
Q psy16310 1139 RGLDIPGI-------------------------------------EHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181 (1493)
Q Consensus 1139 ~GiDip~v-------------------------------------~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~ 1181 (1493)
||+||+.. .|||+|+.|.|...|+||+|||||.|.+|.+++|+
T Consensus 501 RGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fl 580 (853)
T 2fsf_A 501 RGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYL 580 (853)
T ss_dssp SCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred CCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEe
Confidence 99999873 69999999999999999999999999999999999
Q ss_pred cCCCH
Q psy16310 1182 ESDEI 1186 (1493)
Q Consensus 1182 ~~~e~ 1186 (1493)
+..|.
T Consensus 581 s~eD~ 585 (853)
T 2fsf_A 581 SMEDA 585 (853)
T ss_dssp ETTSG
T ss_pred cccHH
Confidence 98774
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=424.02 Aligned_cols=344 Identities=22% Similarity=0.289 Sum_probs=258.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
.+|++++|++.+.+.+...||.+|+|+|.++++.++..+++++++||||||||++|.+|+++.+..
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-------------- 73 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-------------- 73 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------------
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------------
Confidence 469999999999999999999999999999999657789999999999999999999999987642
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~ 927 (1493)
.+.+++|++||++||.|+++.++.+. ..++++..++|+...... .+ ..+
T Consensus 74 ---------------------------~~~~il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~--~~-~~~ 122 (715)
T 2va8_A 74 ---------------------------NGGKAIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDA--WL-KNY 122 (715)
T ss_dssp ---------------------------SCSEEEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCG--GG-GGC
T ss_pred ---------------------------CCCeEEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchh--hc-CCC
Confidence 13479999999999999999996543 458899999998754332 12 367
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
+|+|+|||+|..++..+. ..+.++++|||||||++.++++...+..++.++. +.|++++|||+++. ....
T Consensus 123 ~Iiv~Tpe~l~~~~~~~~---~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~------~~~ii~lSATl~n~-~~~~ 192 (715)
T 2va8_A 123 DIIITTYEKLDSLWRHRP---EWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK------RRNLLALSATISNY-KQIA 192 (715)
T ss_dssp SEEEECHHHHHHHHHHCC---GGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH------TSEEEEEESCCTTH-HHHH
T ss_pred CEEEEcHHHHHHHHhCCh---hHhhccCEEEEechhhcCCcccchHHHHHHHhcc------cCcEEEEcCCCCCH-HHHH
Confidence 999999999999887643 2367899999999999988889889999988874 68999999999752 1111
Q ss_pred hhhccCcCcccccCCCchhHHHHhHhccCC-CcEEec--ccc------ccccccceeeEEEecccchhhHHHHHHHhCCC
Q psy16310 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDL--TEK------IGITKTLTESKILCKHDEKDSYLYYFILQHPG 1078 (1493)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~--~~~------~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 1078 (1493)
... +... +... ... +....+ ... ....... .. ...........+... ...++
T Consensus 193 ~~l-~~~~---~~~~------------~r~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~-~~~~~ 253 (715)
T 2va8_A 193 KWL-GAEP---VATN------------WRPVPLIEGVIYPERKKKEYNVIFKDNT-TK-KVHGDDAIIAYTLDS-LSKNG 253 (715)
T ss_dssp HHH-TCEE---EECC------------CCSSCEEEEEEEECSSTTEEEEEETTSC-EE-EEESSSHHHHHHHHH-HTTTC
T ss_pred HHh-CCCc---cCCC------------CCCCCceEEEEecCCcccceeeecCcch-hh-hcccchHHHHHHHHH-HhcCC
Confidence 111 1000 0000 000 000000 000 0000000 00 000012222222222 34578
Q ss_pred cEEEEecchhhHHHHHHHHHhcC------------------------------------CCccccccCCCHHHHHHHHHH
Q psy16310 1079 RTLVFCNSISSVKRLTQLLTMLK------------------------------------CSPLPLHASMNQRQRLKNLDR 1122 (1493)
Q Consensus 1079 ~~IVF~~s~~~~~~l~~~L~~~~------------------------------------~~~~~lhg~m~~~~R~~~~~~ 1122 (1493)
++||||+++..++.++..|.... ..+..+||+|++.+|..+++.
T Consensus 254 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~ 333 (715)
T 2va8_A 254 QVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEG 333 (715)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHH
Confidence 99999999999999999998642 247889999999999999999
Q ss_pred HhcCCCCeEEeehhhhccccCCCccEEEE----ec-------CCCChhHHHHHHhccCCCC--CCCeEEEEecCCC
Q psy16310 1123 FRDQNNSILLATDVAARGLDIPGIEHVIH----YH-------VPRTSEIYIHRSGRTARAN--NEGLTLVLIESDE 1185 (1493)
Q Consensus 1123 F~~g~~~VLVaTdv~~~GiDip~v~~VI~----~d-------~p~s~~~yiqr~GR~gR~g--~~G~~i~l~~~~e 1185 (1493)
|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|++++++.+
T Consensus 334 f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 334 FRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 99999999999999999999999999999 99 8999999999999999988 4899999998765
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-41 Score=447.21 Aligned_cols=344 Identities=19% Similarity=0.241 Sum_probs=261.5
Q ss_pred HHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhh
Q psy16310 784 YQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863 (1493)
Q Consensus 784 ~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1493)
..+||. | |+|.++||.++ .|+|++++||||||||+ |++|++..+..
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il-~g~dvlv~apTGSGKTl-~~lp~l~~~~~------------------------------ 97 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRIL-RKESFAATAPTGVGKTS-FGLAMSLFLAL------------------------------ 97 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHH-TTCCEECCCCBTSCSHH-HHHHHHHHHHT------------------------------
T ss_pred HhcCCC-H-HHHHHHHHHHH-hCCCEEEEcCCCCCHHH-HHHHHHHHHhh------------------------------
Confidence 348999 9 99999999555 78999999999999998 99999876632
Q ss_pred hcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCc----EEEEEEcCCCHHHH---HHHhcCCCcEEEECcHH
Q psy16310 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPV----KVACVVGGMSTEKQ---LRILNKCPHILVATPGR 936 (1493)
Q Consensus 864 ~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~----~v~~~~gg~~~~~~---~~~l~~~~~IlV~TP~r 936 (1493)
.++++|||+||++||.|+++.++.++...++ ++..++||.+...+ ...+.. ++|+|+||++
T Consensus 98 -----------~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~ 165 (1054)
T 1gku_B 98 -----------KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQF 165 (1054)
T ss_dssp -----------TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHH
T ss_pred -----------cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHH
Confidence 3457999999999999999999999988888 89999999987663 344455 8999999999
Q ss_pred HHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccC------CCCCceEEEEecccccchHhHHhhh
Q psy16310 937 LWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTE------TSQPRQTFVFSATLTHSLKNSLNLK 1010 (1493)
Q Consensus 937 l~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~------~~~~~q~ll~SATl~~~~~~~~~~~ 1010 (1493)
|.+++.+ +.++++|||||||+|++ +...+..++..+.... .+...|+++||||++.. .......
T Consensus 166 L~~~l~~-------L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~ 235 (1054)
T 1gku_B 166 LSKHYRE-------LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAEL 235 (1054)
T ss_dssp HHHCSTT-------SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHH
T ss_pred HHHHHHH-------hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHH
Confidence 9887653 55789999999999998 4678888888774321 13467899999999865 2211000
Q ss_pred ccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhH
Q psy16310 1011 KGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSV 1090 (1493)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~ 1090 (1493)
...... +.+.........+.+.+. ...+...+..++...++++||||+|+..|
T Consensus 236 ------------------~~~~~~------i~v~~~~~~~~~i~~~~~---~~~k~~~L~~ll~~~~~~~LVF~~t~~~a 288 (1054)
T 1gku_B 236 ------------------FRQLLN------FDIGSSRITVRNVEDVAV---NDESISTLSSILEKLGTGGIIYARTGEEA 288 (1054)
T ss_dssp ------------------HHHHHC------CCCSCCEECCCCEEEEEE---SCCCTTTTHHHHTTSCSCEEEEESSHHHH
T ss_pred ------------------hhcceE------EEccCcccCcCCceEEEe---chhHHHHHHHHHhhcCCCEEEEEcCHHHH
Confidence 000111 111111112233444333 35666777777777788999999999999
Q ss_pred HHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEe----ehhhhccccCCCc-cEEEEecCC----------
Q psy16310 1091 KRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA----TDVAARGLDIPGI-EHVIHYHVP---------- 1155 (1493)
Q Consensus 1091 ~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVa----Tdv~~~GiDip~v-~~VI~~d~p---------- 1155 (1493)
+.++..|... +.+..+||+|. .+++.|++|+++|||| |+++++|||+|+| ++||+||+|
T Consensus 289 ~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~ 362 (1054)
T 1gku_B 289 EEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDID 362 (1054)
T ss_dssp HHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGG
T ss_pred HHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccc
Confidence 9999999988 99999999983 7889999999999999 9999999999996 999999999
Q ss_pred -------------------------------------------------------------CChhHHHHHHhccCCCCCC
Q psy16310 1156 -------------------------------------------------------------RTSEIYIHRSGRTARANNE 1174 (1493)
Q Consensus 1156 -------------------------------------------------------------~s~~~yiqr~GR~gR~g~~ 1174 (1493)
.+..+|+||+|||||.|..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~ 442 (1054)
T 1gku_B 363 SLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAG 442 (1054)
T ss_dssp GSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETT
T ss_pred cChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCC
Confidence 7899999999999998877
Q ss_pred C--eEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHH
Q psy16310 1175 G--LTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKK 1217 (1493)
Q Consensus 1175 G--~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~ 1217 (1493)
| .+++|+...+...+..+.+.++. ..+...+++...+..+.+
T Consensus 443 g~~~g~~~~~~~d~~~~~~l~~~l~~-~~~~~~~~~~~~~~~l~~ 486 (1054)
T 1gku_B 443 GLTKGASFLLEDDSELLSAFIERAKL-YDIEFKSIDEVDFEKLSR 486 (1054)
T ss_dssp EECCEEEEEECSCHHHHHHHHHHHHT-TSSCCCBCSCCCHHHHHH
T ss_pred CCceEEEEEEecCHHHHHHHHHHHhh-ccCccccCCcCCHHHHHH
Confidence 6 48888888888888888888775 323333343333344433
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=422.04 Aligned_cols=357 Identities=21% Similarity=0.205 Sum_probs=202.6
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
++..+|||+|.++|+.++ .++|+++++|||||||++|++|+++.+....
T Consensus 3 ~~~~~~~~~Q~~~i~~~~-~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~------------------------------ 51 (556)
T 4a2p_A 3 METKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNMP------------------------------ 51 (556)
T ss_dssp -----CCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTCC------------------------------
T ss_pred CCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHHhCc------------------------------
Confidence 456789999999999654 6789999999999999999999998875421
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCc
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~ 945 (1493)
...+.++|||+||++|+.|+++.++.++...++++..++|+.....+...+..+++|+|+||++|.+++..+.
T Consensus 52 -------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~ 124 (556)
T 4a2p_A 52 -------AGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT 124 (556)
T ss_dssp -------SSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS
T ss_pred -------ccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc
Confidence 1225679999999999999999999998888899999999987776666666678999999999999998765
Q ss_pred CccccccceeEEEecccchhccCCChhHHH-HHHHHhcccCCCCCceEEEEecccccch----HhHHh------hhccCc
Q psy16310 946 FHLTELYKINYLVIDETDRMIESGHFPELK-NILDRVTMTETSQPRQTFVFSATLTHSL----KNSLN------LKKGQS 1014 (1493)
Q Consensus 946 ~~~~~l~~l~~lVlDEah~ll~~~~~~~l~-~il~~l~~~~~~~~~q~ll~SATl~~~~----~~~~~------~~~~~~ 1014 (1493)
. ..+.++++|||||||++.+++.+..+. .++... .....+..+++++|||++... ..++. ......
T Consensus 125 ~--~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~ 201 (556)
T 4a2p_A 125 L--TSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK-FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ 201 (556)
T ss_dssp C--CCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHH-HCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCS
T ss_pred c--cccccCCEEEEECCcccCCcchHHHHHHHHHHhh-hcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCe
Confidence 3 245678999999999998877544332 111111 111235689999999996421 11110 000000
Q ss_pred CcccccCCCchhHHHHhHhccCCCcEEecccccc----------------------------------ccc---------
Q psy16310 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIG----------------------------------ITK--------- 1051 (1493)
Q Consensus 1015 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------------------------~~~--------- 1051 (1493)
.+.........+................... ...
T Consensus 202 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 278 (556)
T 4a2p_A 202 ---AISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVV 278 (556)
T ss_dssp ---EEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHH
T ss_pred ---EecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHH
Confidence 0000000111111111111100000000000 000
Q ss_pred --------------------------------------------------ccee--------------------------
Q psy16310 1052 --------------------------------------------------TLTE-------------------------- 1055 (1493)
Q Consensus 1052 --------------------------------------------------~~~~-------------------------- 1055 (1493)
.+..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (556)
T 4a2p_A 279 TQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEP 358 (556)
T ss_dssp HHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHH
T ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHH
Confidence 0000
Q ss_pred -----eEEEecccchhhHHHHHHH-----hCCCcEEEEecchhhHHHHHHHHHhc------------CCCccccccCCCH
Q psy16310 1056 -----SKILCKHDEKDSYLYYFIL-----QHPGRTLVFCNSISSVKRLTQLLTML------------KCSPLPLHASMNQ 1113 (1493)
Q Consensus 1056 -----~~~~~~~~~k~~~l~~~l~-----~~~~~~IVF~~s~~~~~~l~~~L~~~------------~~~~~~lhg~m~~ 1113 (1493)
.........|...+..++. ..+.++||||+++.+++.++..|... |.....+||+|++
T Consensus 359 ~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 438 (556)
T 4a2p_A 359 ELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTL 438 (556)
T ss_dssp HHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------
T ss_pred HhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCH
Confidence 0000012345556666664 34689999999999999999999875 5566677889999
Q ss_pred HHHHHHHHHHhc-CCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHH
Q psy16310 1114 RQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188 (1493)
Q Consensus 1114 ~~R~~~~~~F~~-g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~ 1188 (1493)
.+|..++++|++ |+++|||||+++++|||+|+|++||+||+|.++..|+||+|| ||. +.|.+++|+++.+...
T Consensus 439 ~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 439 PSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 512 (556)
T ss_dssp ---------------CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHH
T ss_pred HHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHH
Confidence 999999999999 999999999999999999999999999999999999999999 999 8999999998876543
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-40 Score=427.59 Aligned_cols=341 Identities=18% Similarity=0.213 Sum_probs=263.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcch
Q psy16310 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848 (1493)
Q Consensus 769 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 848 (1493)
+|++++|++.+.+.+...||..|+|+|.++++.++..+++++++||||||||++|.+|+++.+...
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------------- 67 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------------- 67 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--------------
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--------------
Confidence 589999999999999999999999999999986477899999999999999999999999877421
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCc
Q psy16310 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928 (1493)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~ 928 (1493)
+.+++|++||++||.|+++.++.+. ..++++..++|+....... ...++
T Consensus 68 ---------------------------~~~~l~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~---~~~~~ 116 (720)
T 2zj8_A 68 ---------------------------GGKAVYIVPLKALAEEKFQEFQDWE-KIGLRVAMATGDYDSKDEW---LGKYD 116 (720)
T ss_dssp ---------------------------CSEEEEECSSGGGHHHHHHHTGGGG-GGTCCEEEECSCSSCCCGG---GGGCS
T ss_pred ---------------------------CCEEEEEcCcHHHHHHHHHHHHHHH-hcCCEEEEecCCCCccccc---cCCCC
Confidence 3479999999999999999997554 3578999999976543321 23579
Q ss_pred EEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHh
Q psy16310 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008 (1493)
Q Consensus 929 IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~ 1008 (1493)
|+|+||++|..++.... ..+.++++||+||||++.++++...+..++..+. .+.|++++|||+++. .....
T Consensus 117 Iiv~Tpe~l~~~~~~~~---~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~-----~~~~ii~lSATl~n~-~~~~~ 187 (720)
T 2zj8_A 117 IIIATAEKFDSLLRHGS---SWIKDVKILVADEIHLIGSRDRGATLEVILAHML-----GKAQIIGLSATIGNP-EELAE 187 (720)
T ss_dssp EEEECHHHHHHHHHHTC---TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB-----TTBEEEEEECCCSCH-HHHHH
T ss_pred EEEECHHHHHHHHHcCh---hhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh-----cCCeEEEEcCCcCCH-HHHHH
Confidence 99999999998887643 2367899999999999999899999999999885 278999999999852 11111
Q ss_pred hhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEec-----ccchhhHHHHHHHhCCCcEEEE
Q psy16310 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCK-----HDEKDSYLYYFILQHPGRTLVF 1083 (1493)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~k~~~l~~~l~~~~~~~IVF 1083 (1493)
. .+.. .+.. .. .+..+... ..... ...... .......+... ...++++|||
T Consensus 188 ~-l~~~---~~~~------------~~-rp~~l~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LVF 243 (720)
T 2zj8_A 188 W-LNAE---LIVS------------DW-RPVKLRRG--VFYQG----FVTWEDGSIDRFSSWEELVYDA-IRKKKGALIF 243 (720)
T ss_dssp H-TTEE---EEEC------------CC-CSSEEEEE--EEETT----EEEETTSCEEECSSTTHHHHHH-HHTTCCEEEE
T ss_pred H-hCCc---ccCC------------CC-CCCcceEE--EEeCC----eeeccccchhhhhHHHHHHHHH-HhCCCCEEEE
Confidence 1 1100 0000 00 00000000 00000 000000 12233333333 3457899999
Q ss_pred ecchhhHHHHHHHHHhc---------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCCe
Q psy16310 1084 CNSISSVKRLTQLLTML---------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130 (1493)
Q Consensus 1084 ~~s~~~~~~l~~~L~~~---------------------------------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~V 1130 (1493)
|++++.++.++..|... ..++..|||+|++.+|..+++.|++|.++|
T Consensus 244 ~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~v 323 (720)
T 2zj8_A 244 VNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKA 323 (720)
T ss_dssp CSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCE
T ss_pred ecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeE
Confidence 99999999999998753 124888999999999999999999999999
Q ss_pred EEeehhhhccccCCCccEEEE----ec----CCCChhHHHHHHhccCCCC--CCCeEEEEecCCCHH
Q psy16310 1131 LLATDVAARGLDIPGIEHVIH----YH----VPRTSEIYIHRSGRTARAN--NEGLTLVLIESDEIP 1187 (1493)
Q Consensus 1131 LVaTdv~~~GiDip~v~~VI~----~d----~p~s~~~yiqr~GR~gR~g--~~G~~i~l~~~~e~~ 1187 (1493)
||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|++++++.+..
T Consensus 324 lvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 324 VVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp EEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH
T ss_pred EEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH
Confidence 999999999999999999998 77 6899999999999999998 579999999988743
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=400.97 Aligned_cols=352 Identities=16% Similarity=0.199 Sum_probs=256.0
Q ss_pred HCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 785 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 785 ~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
.+|+ .|||+|..++|. +..|+ |++++||+|||++|.+|++...+.
T Consensus 107 ~lG~-rP~~VQ~~~ip~-Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~------------------------------- 151 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAA-LHLGN--VAEMKTGEGKTLTCVLPAYLNALA------------------------------- 151 (922)
T ss_dssp HHSC-CCCHHHHHHHHH-HHTTE--EEECCTTSCHHHHTHHHHHHHHTT-------------------------------
T ss_pred HcCC-CCCHHHHHHHHh-HhcCC--EEEecCCCccHHHHHHHHHHHHHh-------------------------------
Confidence 3698 999999999994 55665 999999999999999999754322
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHh
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQL 943 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~ 943 (1493)
+..++||+||++||.|+++.+..++.++++++++++||.+..... +..++||+||||++| .++|..
T Consensus 152 -----------g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~--~~y~~DIvygTpgrlgfDyLrD 218 (922)
T 1nkt_A 152 -----------GNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERR--VAYNADITYGTNNEFGFDYLRD 218 (922)
T ss_dssp -----------TSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHH
T ss_pred -----------CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH--HhcCCCEEEECchHhhHHHHHh
Confidence 235999999999999999999999999999999999999865443 334689999999999 788876
Q ss_pred CcC---ccccccceeEEEecccchhc-cC---------------CChhHHHHHHHHhccc----CCCCCceEE-------
Q psy16310 944 GHF---HLTELYKINYLVIDETDRMI-ES---------------GHFPELKNILDRVTMT----ETSQPRQTF------- 993 (1493)
Q Consensus 944 ~~~---~~~~l~~l~~lVlDEah~ll-~~---------------~~~~~l~~il~~l~~~----~~~~~~q~l------- 993 (1493)
+.. ....++.+.++||||||+|+ +. +|+..+..++..++.. -.+..+|++
T Consensus 219 ~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~ 298 (922)
T 1nkt_A 219 NMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVE 298 (922)
T ss_dssp TTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHH
T ss_pred hhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHH
Confidence 521 12345689999999999998 43 4778888999888410 012568998
Q ss_pred ----------EEeccccc---chHhHHhhh--ccCcC---------------cccccCC---CchhHH-HH--hHhccC-
Q psy16310 994 ----------VFSATLTH---SLKNSLNLK--KGQSK---------------SKKVSKG---DPSIKR-LQ--DLLNIK- 1036 (1493)
Q Consensus 994 ----------l~SATl~~---~~~~~~~~~--~~~~~---------------~~~~~~~---~~~~~~-l~--~~~~~~- 1036 (1493)
+||||.+. .+...+... +.... ...+..+ ...+.. +. ..+.+.
T Consensus 299 ~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~ 378 (922)
T 1nkt_A 299 FVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKA 378 (922)
T ss_dssp HHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCC
T ss_pred HHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccc
Confidence 99999874 333222110 00000 0000000 000000 00 000010
Q ss_pred --------------------------------------CCcEEeccccccccccceeeEEEecccchhhHHHHHHHh---
Q psy16310 1037 --------------------------------------SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ--- 1075 (1493)
Q Consensus 1037 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--- 1075 (1493)
...++.+.........-....+.+...+|...+...+..
T Consensus 379 e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~ 458 (922)
T 1nkt_A 379 ENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYA 458 (922)
T ss_dssp CEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHH
T ss_pred cccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh
Confidence 111111111111111111123455566777777776643
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCc---------
Q psy16310 1076 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGI--------- 1146 (1493)
Q Consensus 1076 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v--------- 1146 (1493)
.+.++||||+|+..++.|+..|...|+++.++||++.++++..+.+.|+.| .|+|||++++||+||+.+
T Consensus 459 ~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~ 536 (922)
T 1nkt_A 459 KGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQ 536 (922)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHH
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHH
Confidence 466899999999999999999999999999999999888888888888877 699999999999999975
Q ss_pred -------------------------------------------cEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecC
Q psy16310 1147 -------------------------------------------EHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIES 1183 (1493)
Q Consensus 1147 -------------------------------------------~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~ 1183 (1493)
.|||+|+.|.|...|+||+|||||.|.+|.+++|++.
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSl 616 (922)
T 1nkt_A 537 RLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSL 616 (922)
T ss_dssp HHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEET
T ss_pred HHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEech
Confidence 5999999999999999999999999999999999998
Q ss_pred CCH
Q psy16310 1184 DEI 1186 (1493)
Q Consensus 1184 ~e~ 1186 (1493)
.|.
T Consensus 617 eD~ 619 (922)
T 1nkt_A 617 GDE 619 (922)
T ss_dssp TSH
T ss_pred hHH
Confidence 775
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=430.29 Aligned_cols=342 Identities=16% Similarity=0.196 Sum_probs=257.8
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 769 EWVKFN--IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 769 ~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
+|++++ |++.+.+.+...||.+|+|+|.++++. +..+++++++||||||||++|.+|+++.+..
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~-i~~~~~~lv~apTGsGKT~~~~l~il~~~~~------------- 67 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEK-VFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------------- 67 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHH-HTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-------------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHH-HhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-------------
Confidence 477888 999999999999999999999999985 6678999999999999999999999987632
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
+.+++|++||++||.|+++.++.+. ..++++..++|+...... ....
T Consensus 68 -----------------------------~~~~l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~ 114 (702)
T 2p6r_A 68 -----------------------------GGKSLYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGD 114 (702)
T ss_dssp -----------------------------TCCEEEEESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTT
T ss_pred -----------------------------CCcEEEEeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccC
Confidence 2469999999999999999996443 458999999998654322 1236
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|+|+|||+|..++..+. ..+.++++||+||||++.++++...+..++..+... .++.|++++|||+++. ...
T Consensus 115 ~~Iiv~Tpe~l~~~l~~~~---~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~--~~~~~ii~lSATl~n~-~~~ 188 (702)
T 2p6r_A 115 CDIIVTTSEKADSLIRNRA---SWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM--NKALRVIGLSATAPNV-TEI 188 (702)
T ss_dssp CSEEEEEHHHHHHHHHTTC---SGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH--CTTCEEEEEECCCTTH-HHH
T ss_pred CCEEEECHHHHHHHHHcCh---hHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc--CcCceEEEECCCcCCH-HHH
Confidence 7999999999999887643 236789999999999999989988888888877432 3568999999999852 222
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCC-CcEEeccccccccccceeeEEEe-----cccchhhHHHHHHHhCCCcE
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILC-----KHDEKDSYLYYFILQHPGRT 1080 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~k~~~l~~~l~~~~~~~ 1080 (1493)
... .+... +.. .... +....+.. .. ...+... ........+... ...++++
T Consensus 189 ~~~-l~~~~---~~~------------~~r~~~l~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 245 (702)
T 2p6r_A 189 AEW-LDADY---YVS------------DWRPVPLVEGVLC-----EG-TLELFDGAFSTSRRVKFEELVEEC-VAENGGV 245 (702)
T ss_dssp HHH-TTCEE---EEC------------CCCSSCEEEEEEC-----SS-EEEEEETTEEEEEECCHHHHHHHH-HHTTCCE
T ss_pred HHH-hCCCc---ccC------------CCCCccceEEEee-----CC-eeeccCcchhhhhhhhHHHHHHHH-HhcCCCE
Confidence 111 11000 000 0000 00000000 00 0000000 000122333333 3467899
Q ss_pred EEEecchhhHHHHHHHHHhc------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCCe
Q psy16310 1081 LVFCNSISSVKRLTQLLTML------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130 (1493)
Q Consensus 1081 IVF~~s~~~~~~l~~~L~~~------------------------------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~V 1130 (1493)
||||++++.++.++..|... +..+..+||+|++.+|..+++.|++|.++|
T Consensus 246 LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~v 325 (702)
T 2p6r_A 246 LVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKV 325 (702)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCE
T ss_pred EEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeE
Confidence 99999999999999988753 246888999999999999999999999999
Q ss_pred EEeehhhhccccCCCccEEEE----ec---CCCChhHHHHHHhccCCCC--CCCeEEEEecCCCH
Q psy16310 1131 LLATDVAARGLDIPGIEHVIH----YH---VPRTSEIYIHRSGRTARAN--NEGLTLVLIESDEI 1186 (1493)
Q Consensus 1131 LVaTdv~~~GiDip~v~~VI~----~d---~p~s~~~yiqr~GR~gR~g--~~G~~i~l~~~~e~ 1186 (1493)
||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|++++++.+.
T Consensus 326 lvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 326 VVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp EEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred EEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccH
Confidence 999999999999999999998 76 7899999999999999998 58999999988773
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=432.54 Aligned_cols=368 Identities=17% Similarity=0.154 Sum_probs=219.8
Q ss_pred HHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHH
Q psy16310 780 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 859 (1493)
Q Consensus 780 ~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (1493)
..++..+||..|+|+|.++++.++ .|+|+|+++|||+|||++|++|+++.+....
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l-~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~------------------------ 57 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAM-KGKNTIICAPTGCGKTFVSLLICEHHLKKFP------------------------ 57 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHHSC------------------------
T ss_pred CCcccccCCCCccHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHHHHHHHHHhCc------------------------
Confidence 356778999999999999999554 6789999999999999999999998774321
Q ss_pred HHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHH
Q psy16310 860 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 939 (1493)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~ 939 (1493)
...+.++|||+||++|+.|+++.+++++...++++..++||.....+...+..+++|+|+||++|.+
T Consensus 58 -------------~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~ 124 (696)
T 2ykg_A 58 -------------QGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 124 (696)
T ss_dssp -------------TTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHH
T ss_pred -------------cCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHH
Confidence 1223579999999999999999999998888899999999987655555555578999999999999
Q ss_pred HHHhCcCccccccceeEEEecccchhccCCChhHHH-HHHHHhcccCCCCCceEEEEeccccc-------chHhHHhhhc
Q psy16310 940 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELK-NILDRVTMTETSQPRQTFVFSATLTH-------SLKNSLNLKK 1011 (1493)
Q Consensus 940 ~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~-~il~~l~~~~~~~~~q~ll~SATl~~-------~~~~~~~~~~ 1011 (1493)
.+..+.. ..+.++++|||||||++.....+..+. .++............+++++|||+.. .....+....
T Consensus 125 ~l~~~~~--~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~ 202 (696)
T 2ykg_A 125 NLKKGTI--PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLC 202 (696)
T ss_dssp HHHTTSS--CCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHH
T ss_pred HHhcCcc--cccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHH
Confidence 9987653 135688999999999988654222211 12221111122356799999999972 1111111000
Q ss_pred cCcCccccc------------------------C-CCc-----------hhHHHHhHhccCCCcEEe-------------
Q psy16310 1012 GQSKSKKVS------------------------K-GDP-----------SIKRLQDLLNIKSPKIVD------------- 1042 (1493)
Q Consensus 1012 ~~~~~~~~~------------------------~-~~~-----------~~~~l~~~~~~~~~~~~~------------- 1042 (1493)
.......+. . ... .+..+...+. ..+..+.
T Consensus 203 ~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 281 (696)
T 2ykg_A 203 ASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRIC-KDLENLSQIQNREFGTQKYE 281 (696)
T ss_dssp HHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHS-TTGGGSSSCCSCCSSSHHHH
T ss_pred HhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHH-HHHHHhhccccccccchhHH
Confidence 000000000 0 000 0000000000 0000000
Q ss_pred --------------cccc-----------------------------------------------ccccccceeeEEE--
Q psy16310 1043 --------------LTEK-----------------------------------------------IGITKTLTESKIL-- 1059 (1493)
Q Consensus 1043 --------------~~~~-----------------------------------------------~~~~~~~~~~~~~-- 1059 (1493)
.... ......+.+.+..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 361 (696)
T 2ykg_A 282 QWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRF 361 (696)
T ss_dssp HHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 0000 0000000000000
Q ss_pred -------------e-cccchhhHHHHHHHhC-----CCcEEEEecchhhHHHHHHHHHhcC----CCcccc--------c
Q psy16310 1060 -------------C-KHDEKDSYLYYFILQH-----PGRTLVFCNSISSVKRLTQLLTMLK----CSPLPL--------H 1108 (1493)
Q Consensus 1060 -------------~-~~~~k~~~l~~~l~~~-----~~~~IVF~~s~~~~~~l~~~L~~~~----~~~~~l--------h 1108 (1493)
+ ....+...+..++... ++++||||+++..++.++..|...+ +.+..+ |
T Consensus 362 ~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h 441 (696)
T 2ykg_A 362 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 441 (696)
T ss_dssp HTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC----------
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccc
Confidence 0 1345666666666543 5789999999999999999999987 788777 5
Q ss_pred cCCCHHHHHHHHHHHhc-CCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHH
Q psy16310 1109 ASMNQRQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187 (1493)
Q Consensus 1109 g~m~~~~R~~~~~~F~~-g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~ 1187 (1493)
|+|++.+|..++++|++ |+++|||||+++++|||+|+|++||+||+|.+..+|+||+|| ||. +.|.+++|++..+..
T Consensus 442 ~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~ 519 (696)
T 2ykg_A 442 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVI 519 (696)
T ss_dssp -------------------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHH
Confidence 69999999999999998 999999999999999999999999999999999999999999 998 789999999887764
Q ss_pred HHH
Q psy16310 1188 LYI 1190 (1493)
Q Consensus 1188 ~~~ 1190 (1493)
...
T Consensus 520 ~~~ 522 (696)
T 2ykg_A 520 EKE 522 (696)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-40 Score=420.22 Aligned_cols=388 Identities=20% Similarity=0.192 Sum_probs=208.0
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
+.-.|+|+|.++++. +..++|+|+++|||||||++|++|+++.+....
T Consensus 4 ~~~~~~~~Q~~~i~~-~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~------------------------------- 51 (556)
T 4a2p_A 4 ETKKARSYQIELAQP-AINGKNALICAPTGSGKTFVSILICEHHFQNMP------------------------------- 51 (556)
T ss_dssp ----CCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------------------------------
T ss_pred CCCCCCHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc-------------------------------
Confidence 445799999999985 556789999999999999999999998875311
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCc
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~ 329 (1493)
...+.++|||+||++|+.|+++.+..++...++++..++|+.....++..+..+++|+|+||++|.+++..+..
T Consensus 52 ------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~ 125 (556)
T 4a2p_A 52 ------AGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTL 125 (556)
T ss_dssp ------SSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSC
T ss_pred ------ccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcc
Confidence 12256799999999999999999999988778999999999887777777767789999999999999987654
Q ss_pred cccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeec
Q psy16310 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409 (1493)
Q Consensus 330 ~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SAT 409 (1493)
..+.++++|||||||++.+++++..+ +..+.... .....+..++++||||
T Consensus 126 --~~~~~~~~vViDEah~~~~~~~~~~~---~~~~~~~~-------------------------~~~~~~~~~~l~lSAT 175 (556)
T 4a2p_A 126 --TSLSIFTLMIFDECHNTTGNHPYNVL---MTRYLEQK-------------------------FNSASQLPQILGLTAS 175 (556)
T ss_dssp --CCSTTCSEEEEETGGGCSTTSHHHHH---HHHHHHHH-------------------------HCC---CCEEEEEESC
T ss_pred --cccccCCEEEEECCcccCCcchHHHH---HHHHHHhh-------------------------hcccCCCCeEEEEeCC
Confidence 13558899999999999877653333 22111000 0001345799999999
Q ss_pred cchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCC
Q psy16310 410 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 489 (1493)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (1493)
++..-...+. .....+..+......... ................+.
T Consensus 176 ~~~~~~~~~~---------------~~~~~i~~l~~~l~~~~~-------------------~~~~~~~~~~~~~~~~~~ 221 (556)
T 4a2p_A 176 VGVGNAKNIE---------------ETIEHICSLCSYLDIQAI-------------------STVRENIQELQRFMNKPE 221 (556)
T ss_dssp CCCTTCSSHH---------------HHHHHHHHHHHHHTCSEE-------------------ECCCTTHHHHHHHTCCCC
T ss_pred cccCchhhHH---------------HHHHHHHHHHHhcCCeEe-------------------cchhcchHHHHhcCCCCc
Confidence 9642110000 000000000000000000 000000000111122222
Q ss_pred cchh------------------hHHHhhhhccCC-------------------cccccccc---cccc------------
Q psy16310 490 RTLC------------------EEIQDLLNIKSP-------------------KIVDLTEK---IGIT------------ 517 (1493)
Q Consensus 490 ~~~~------------------~~~~~~~~~~~~-------------------~~~~~~~~---~~~~------------ 517 (1493)
.... ..+......... .+..+... ....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (556)
T 4a2p_A 222 IDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRAL 301 (556)
T ss_dssp EEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHH
T ss_pred eEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 1100 000000000000 00000000 0000
Q ss_pred -----------------------c---ccc-------------------------------ccccccccCchhhHHHHHH
Q psy16310 518 -----------------------K---TLT-------------------------------ESKILCKHDEKDSYLYYFI 540 (1493)
Q Consensus 518 -----------------------~---~~~-------------------------------~~~~~~~~~~k~~~l~~~l 540 (1493)
. .+. ........+.|...|..++
T Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l 381 (556)
T 4a2p_A 302 FICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCIL 381 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHH
Confidence 0 000 0000011355777777777
Q ss_pred h-----hCCCcEEEEecchhhHHHHHHHHHhc------------CCCccccccCCCHHHHHHHHHHHhc-CCCeEEEEec
Q psy16310 541 L-----QHPGRTLVFCNSISSVKRLTQLLTML------------KCSPLPLHASMNQRQRLKNLDRFRD-QNNSILLATD 602 (1493)
Q Consensus 541 ~-----~~~~~~IIF~~s~~~a~~L~~~L~~~------------~~~~~~lhg~~~~~~R~~vl~~Fr~-g~~~VLVaTd 602 (1493)
. ..+.++||||+++.++..++..|... |.....+||+|++.+|..+++.|++ |+++|||||+
T Consensus 382 ~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~ 461 (556)
T 4a2p_A 382 DDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS 461 (556)
T ss_dssp HHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC
T ss_pred HHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC
Confidence 5 34689999999999999999999765 5556677889999999999999999 9999999999
Q ss_pred hhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 603 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 603 v~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
++++|||+|+|++||+||+|.|+..|+||+|| ||. +.|.|++|+++.+......++.
T Consensus 462 ~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~~~ 518 (556)
T 4a2p_A 462 VADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVENEKCNR 518 (556)
T ss_dssp -----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHHHHHHHH
T ss_pred chhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHHHHHhhH
Confidence 99999999999999999999999999999999 998 7999999999988765544443
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=433.75 Aligned_cols=389 Identities=17% Similarity=0.186 Sum_probs=283.8
Q ss_pred cCCCCHHHHHHHHH-CCCCCCcHHHHhhHHHhhcc---CC--cEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCC
Q psy16310 772 KFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLA---RK--DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 845 (1493)
Q Consensus 772 ~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~~---~~--dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 845 (1493)
.+++++.+.+.+.. ++|+ |||+|.++|+.++.. ++ |+++++|||||||++|+++++..+.
T Consensus 585 ~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~------------- 650 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------------- 650 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT-------------
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH-------------
Confidence 45677778877754 5775 799999999976652 55 9999999999999999999886542
Q ss_pred cchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHH---HH
Q psy16310 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL---RI 922 (1493)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~---~~ 922 (1493)
.+.+++||+||++||.|+++.+.......++++..++|+.+...+. ..
T Consensus 651 -----------------------------~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~ 701 (1151)
T 2eyq_A 651 -----------------------------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAE 701 (1151)
T ss_dssp -----------------------------TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHH
T ss_pred -----------------------------hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHH
Confidence 3358999999999999999999998888889999999887765543 33
Q ss_pred hcC-CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEeccccc
Q psy16310 923 LNK-CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001 (1493)
Q Consensus 923 l~~-~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~ 1001 (1493)
+.. .++|+|+||+.|. . . ..+.++++|||||||++ ......++..+. ...++++||||+++
T Consensus 702 l~~g~~dIvV~T~~ll~----~-~---~~~~~l~lvIiDEaH~~-----g~~~~~~l~~l~-----~~~~vl~lSATp~p 763 (1151)
T 2eyq_A 702 VAEGKIDILIGTHKLLQ----S-D---VKFKDLGLLIVDEEHRF-----GVRHKERIKAMR-----ANVDILTLTATPIP 763 (1151)
T ss_dssp HHTTCCSEEEECTHHHH----S-C---CCCSSEEEEEEESGGGS-----CHHHHHHHHHHH-----TTSEEEEEESSCCC
T ss_pred HhcCCCCEEEECHHHHh----C-C---ccccccceEEEechHhc-----ChHHHHHHHHhc-----CCCCEEEEcCCCCh
Confidence 333 5899999998763 1 2 24678999999999994 334555666553 56899999999875
Q ss_pred chHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHH--HhCCCc
Q psy16310 1002 SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI--LQHPGR 1079 (1493)
Q Consensus 1002 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l--~~~~~~ 1079 (1493)
......... +.....+... ......+...... . ........++ ...+++
T Consensus 764 ~~l~~~~~~------------------------~~~~~~i~~~--~~~r~~i~~~~~~-~--~~~~i~~~il~~l~~g~q 814 (1151)
T 2eyq_A 764 RTLNMAMSG------------------------MRDLSIIATP--PARRLAVKTFVRE-Y--DSMVVREAILREILRGGQ 814 (1151)
T ss_dssp HHHHHHHTT------------------------TSEEEECCCC--CCBCBCEEEEEEE-C--CHHHHHHHHHHHHTTTCE
T ss_pred hhHHHHHhc------------------------CCCceEEecC--CCCccccEEEEec-C--CHHHHHHHHHHHHhcCCe
Confidence 543322110 0111111100 0001111111111 1 1111111121 235789
Q ss_pred EEEEecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecC-CC
Q psy16310 1080 TLVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV-PR 1156 (1493)
Q Consensus 1080 ~IVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~-p~ 1156 (1493)
++|||+++..++.++..|... +..+..+||+|++.+|..++++|++|+++|||||+++++|+|+|++++||+++. +.
T Consensus 815 vlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~ 894 (1151)
T 2eyq_A 815 VYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 894 (1151)
T ss_dssp EEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSS
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCC
Confidence 999999999999999999987 788999999999999999999999999999999999999999999999999998 46
Q ss_pred ChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy16310 1157 TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIKKNR 1236 (1493)
Q Consensus 1157 s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 1236 (1493)
+..+|+||+||+||.|+.|.|++++.+.+.. .....+++........+++++....
T Consensus 895 ~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~~l------------------------~~~~~~rl~~i~~~~~lg~gf~ia~ 950 (1151)
T 2eyq_A 895 GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAM------------------------TTDAQKRLEAIASLEDLGAGFALAT 950 (1151)
T ss_dssp CHHHHHHHHTTCCBTTBCEEEEEEECCGGGS------------------------CHHHHHHHHHHTTCCSBSHHHHHHH
T ss_pred CHHHHHHHHhccCcCCCceEEEEEECCcccc------------------------CHHHHHHHHHHHHhhccCCcchHHH
Confidence 8999999999999999999999998654310 0122233333333322333444445
Q ss_pred CchHHHHHhhhhhhcccccchhccccCChhHHHHHHHHHHhh
Q psy16310 1237 PDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1278 (1493)
Q Consensus 1237 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1278 (1493)
.+..++++|...+..|+| .+...+|+.|.+++++..++
T Consensus 951 ~dl~irg~g~~lg~~q~g----~i~~~~~~~~~~~l~~a~~~ 988 (1151)
T 2eyq_A 951 HDLEIRGAGELLGEEQSG----SMETIGFSLYMELLENAVDA 988 (1151)
T ss_dssp HHHHHHHHHHHHCHHHHH----HHHHHCHHHHHHHHHHHHHH
T ss_pred HHhccCCCcccCCccccC----ChhhccHHHHHHHHHHHHHH
Confidence 566788889988888988 78888999999998876553
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-40 Score=418.30 Aligned_cols=359 Identities=17% Similarity=0.173 Sum_probs=228.7
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
.+|+|+|.++++.+ ..|+|+++++|||||||++|++|+++.+....
T Consensus 3 ~~~~~~Q~~~i~~~-~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~--------------------------------- 48 (555)
T 3tbk_A 3 LKPRNYQLELALPA-KKGKNTIICAPTGCGKTFVSLLICEHHLKKFP--------------------------------- 48 (555)
T ss_dssp CCCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---------------------------------
T ss_pred CCCcHHHHHHHHHH-hCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---------------------------------
Confidence 47999999999955 47789999999999999999999998875421
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCcc
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~ 948 (1493)
...+.++|||+||++|+.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|.+++..+..
T Consensus 49 ----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~-- 122 (555)
T 3tbk_A 49 ----CGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAI-- 122 (555)
T ss_dssp ----SSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSS--
T ss_pred ----cCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcc--
Confidence 12356799999999999999999999988889999999999876665555556789999999999999987653
Q ss_pred ccccceeEEEecccchhccCCChhHHH-HHHHHhcccCCCCCceEEEEecccccch-------HhHH-hhhccCcCcccc
Q psy16310 949 TELYKINYLVIDETDRMIESGHFPELK-NILDRVTMTETSQPRQTFVFSATLTHSL-------KNSL-NLKKGQSKSKKV 1019 (1493)
Q Consensus 949 ~~l~~l~~lVlDEah~ll~~~~~~~l~-~il~~l~~~~~~~~~q~ll~SATl~~~~-------~~~~-~~~~~~~~~~~~ 1019 (1493)
..+.++++|||||||++...+.+..+. ..+............+++++|||++... ...+ ....... ...+
T Consensus 123 ~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~-~~~~ 201 (555)
T 3tbk_A 123 PSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALD-ASVI 201 (555)
T ss_dssp CCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTT-CSEE
T ss_pred cccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcC-Ceee
Confidence 246678999999999998765332222 2222221222235679999999996531 1100 0000000 0000
Q ss_pred cCCCchhHHHHhHhccCCCcEEeccccc-----------------------------------cccc-------------
Q psy16310 1020 SKGDPSIKRLQDLLNIKSPKIVDLTEKI-----------------------------------GITK------------- 1051 (1493)
Q Consensus 1020 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------------------------------~~~~------------- 1051 (1493)
.........+.................. ....
T Consensus 202 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 281 (555)
T 3tbk_A 202 ATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKA 281 (555)
T ss_dssp ECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHH
T ss_pred eccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHH
Confidence 0000011111111100000000000000 0000
Q ss_pred -------------------------------------------------c----c-----------------------ee
Q psy16310 1052 -------------------------------------------------T----L-----------------------TE 1055 (1493)
Q Consensus 1052 -------------------------------------------------~----~-----------------------~~ 1055 (1493)
. . ..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (555)
T 3tbk_A 282 CSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEK 361 (555)
T ss_dssp HHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHH
T ss_pred hhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhh
Confidence 0 0 00
Q ss_pred e-EEEecccchhhHHHHHHHh-----CCCcEEEEecchhhHHHHHHHHHhcC------------CCccccccCCCHHHHH
Q psy16310 1056 S-KILCKHDEKDSYLYYFILQ-----HPGRTLVFCNSISSVKRLTQLLTMLK------------CSPLPLHASMNQRQRL 1117 (1493)
Q Consensus 1056 ~-~~~~~~~~k~~~l~~~l~~-----~~~~~IVF~~s~~~~~~l~~~L~~~~------------~~~~~lhg~m~~~~R~ 1117 (1493)
. ........|...+..++.. .++++||||+++.+++.++..|...+ .....+||+|++.+|.
T Consensus 362 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~ 441 (555)
T 3tbk_A 362 VSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQK 441 (555)
T ss_dssp HHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC----------------
T ss_pred hccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHH
Confidence 0 0000123455566655543 35899999999999999999998763 4555677899999999
Q ss_pred HHHHHHhc-CCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHH
Q psy16310 1118 KNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYI 1190 (1493)
Q Consensus 1118 ~~~~~F~~-g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~ 1190 (1493)
.++++|++ |+++|||||+++++|||+|+|++||+||+|.++..|+||+|| ||. +.|.+++|+++.+.....
T Consensus 442 ~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 442 CVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp ----------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHH
T ss_pred HHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHH
Confidence 99999999 999999999999999999999999999999999999999999 998 899999999887765443
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=425.41 Aligned_cols=344 Identities=19% Similarity=0.233 Sum_probs=260.9
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccc
Q psy16310 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 231 (1493)
+|++++|++.+.+.+...||..|+|+|.++++.++..++|++++||||||||++|.+|+++.+..
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------------- 66 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT--------------- 66 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH---------------
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------------
Confidence 48899999999999999999999999999999647789999999999999999999999987742
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCC
Q psy16310 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311 (1493)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~ 311 (1493)
.+.+++|++||++||.|+++.+..+.. .++++..++|+...... ....++
T Consensus 67 --------------------------~~~~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~ 116 (720)
T 2zj8_A 67 --------------------------QGGKAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYD 116 (720)
T ss_dssp --------------------------HCSEEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCS
T ss_pred --------------------------CCCEEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCC
Confidence 135799999999999999999965543 48999999998654432 124579
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1493)
|+|+||++|..++.+... .+.++++|||||||++.++++...++.++.++.
T Consensus 117 Iiv~Tpe~l~~~~~~~~~---~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~-------------------------- 167 (720)
T 2zj8_A 117 IIIATAEKFDSLLRHGSS---WIKDVKILVADEIHLIGSRDRGATLEVILAHML-------------------------- 167 (720)
T ss_dssp EEEECHHHHHHHHHHTCT---TGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB--------------------------
T ss_pred EEEECHHHHHHHHHcChh---hhhcCCEEEEECCcccCCCcccHHHHHHHHHhh--------------------------
Confidence 999999999988876432 356899999999999988899999999988773
Q ss_pred ccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhh
Q psy16310 392 VTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILC 471 (1493)
Q Consensus 392 ~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1493)
...|++++|||+++. ..+ ..++... ... .... +..+.... ..
T Consensus 168 -------~~~~ii~lSATl~n~-~~~-----------------------~~~l~~~---~~~--~~~r-p~~l~~~~-~~ 209 (720)
T 2zj8_A 168 -------GKAQIIGLSATIGNP-EEL-----------------------AEWLNAE---LIV--SDWR-PVKLRRGV-FY 209 (720)
T ss_dssp -------TTBEEEEEECCCSCH-HHH-----------------------HHHTTEE---EEE--CCCC-SSEEEEEE-EE
T ss_pred -------cCCeEEEEcCCcCCH-HHH-----------------------HHHhCCc---ccC--CCCC-CCcceEEE-Ee
Confidence 146999999999752 111 1121100 000 0000 00000000 00
Q ss_pred ccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEe
Q psy16310 472 KHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFC 551 (1493)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~ 551 (1493)
.+.+ ....... .........+...+ ..++++||||
T Consensus 210 --------------------------------~~~~-------~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~LVF~ 244 (720)
T 2zj8_A 210 --------------------------------QGFV-------TWEDGSI-----DRFSSWEELVYDAI-RKKKGALIFV 244 (720)
T ss_dssp --------------------------------TTEE-------EETTSCE-----EECSSTTHHHHHHH-HTTCCEEEEC
T ss_pred --------------------------------CCee-------eccccch-----hhhhHHHHHHHHHH-hCCCCEEEEe
Confidence 0000 0000000 00122333444433 3568999999
Q ss_pred cchhhHHHHHHHHHhc---------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCeEE
Q psy16310 552 NSISSVKRLTQLLTML---------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598 (1493)
Q Consensus 552 ~s~~~a~~L~~~L~~~---------------------------------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VL 598 (1493)
+++..++.++..|... ..++..+||+|++.+|..+++.|++|.++||
T Consensus 245 ~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vl 324 (720)
T 2zj8_A 245 NMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAV 324 (720)
T ss_dssp SCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEE
T ss_pred cCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEE
Confidence 9999999999888643 1358899999999999999999999999999
Q ss_pred EEechhhccCCCCCCcEEEE----ec----CCCChHHHHHHHhccccCC--CCCeEEEEecCCc
Q psy16310 599 LATDVAARGLDIPGIEHVIH----YH----VPRTSEIYIHRSGRTARAN--NEGLTVVLIESDE 652 (1493)
Q Consensus 599 VaTdv~~rGlDip~v~~VI~----yd----~P~s~~~yiQR~GRagR~g--~~G~~i~l~~~~e 652 (1493)
|||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|++++++.+
T Consensus 325 vaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 325 VATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp EECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred EECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 99999999999999999998 77 6999999999999999988 4799999998876
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=422.52 Aligned_cols=353 Identities=22% Similarity=0.275 Sum_probs=256.9
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|++++|++.+.+.+...||..|+|+|.++++.++..+++++++||||||||++|.+|+++.+..
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-------------- 73 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-------------- 73 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------------
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------------
Confidence 368999999999999999999999999999999657789999999999999999999999987642
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~ 310 (1493)
.+.+++|++|+++||.|+++.++.+. ..++++..++|+......+ ...+
T Consensus 74 ---------------------------~~~~il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~---~~~~ 122 (715)
T 2va8_A 74 ---------------------------NGGKAIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW---LKNY 122 (715)
T ss_dssp ---------------------------SCSEEEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG---GGGC
T ss_pred ---------------------------CCCeEEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh---cCCC
Confidence 23579999999999999999996543 3588999999987654321 2367
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+|+|+||++|..++.+... .+.++++|||||||++.+.++...++.++.++.
T Consensus 123 ~Iiv~Tpe~l~~~~~~~~~---~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~------------------------- 174 (715)
T 2va8_A 123 DIIITTYEKLDSLWRHRPE---WLNEVNYFVLDELHYLNDPERGPVVESVTIRAK------------------------- 174 (715)
T ss_dssp SEEEECHHHHHHHHHHCCG---GGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH-------------------------
T ss_pred CEEEEcHHHHHHHHhCChh---HhhccCEEEEechhhcCCcccchHHHHHHHhcc-------------------------
Confidence 9999999999998886432 356899999999999988789988988887763
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
..|++++|||+++. ..+ ..++... ... .... +..+.... .
T Consensus 175 ---------~~~ii~lSATl~n~-~~~-----------------------~~~l~~~---~~~--~~~r-~~~l~~~~-~ 214 (715)
T 2va8_A 175 ---------RRNLLALSATISNY-KQI-----------------------AKWLGAE---PVA--TNWR-PVPLIEGV-I 214 (715)
T ss_dssp ---------TSEEEEEESCCTTH-HHH-----------------------HHHHTCE---EEE--CCCC-SSCEEEEE-E
T ss_pred ---------cCcEEEEcCCCCCH-HHH-----------------------HHHhCCC---ccC--CCCC-CCCceEEE-E
Confidence 36999999999742 111 1222100 000 0000 00000000 0
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 550 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF 550 (1493)
........+ ....... ..............+...+ ..++++|||
T Consensus 215 ~~~~~~~~~---------------------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~LVF 258 (715)
T 2va8_A 215 YPERKKKEY---------------------------------NVIFKDN--TTKKVHGDDAIIAYTLDSL-SKNGQVLVF 258 (715)
T ss_dssp EECSSTTEE---------------------------------EEEETTS--CEEEEESSSHHHHHHHHHH-TTTCCEEEE
T ss_pred ecCCcccce---------------------------------eeecCcc--hhhhcccchHHHHHHHHHH-hcCCCEEEE
Confidence 000000000 0000000 0000000122333333333 356899999
Q ss_pred ecchhhHHHHHHHHHhcC------------------------------------CCccccccCCCHHHHHHHHHHHhcCC
Q psy16310 551 CNSISSVKRLTQLLTMLK------------------------------------CSPLPLHASMNQRQRLKNLDRFRDQN 594 (1493)
Q Consensus 551 ~~s~~~a~~L~~~L~~~~------------------------------------~~~~~lhg~~~~~~R~~vl~~Fr~g~ 594 (1493)
|+++..++.++..|.... .++..+||+|++.+|..+++.|++|.
T Consensus 259 ~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~ 338 (715)
T 2va8_A 259 RNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRK 338 (715)
T ss_dssp CSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTC
T ss_pred ECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCC
Confidence 999999999999987542 35888999999999999999999999
Q ss_pred CeEEEEechhhccCCCCCCcEEEE----ec-------CCCChHHHHHHHhccccCC--CCCeEEEEecCCc
Q psy16310 595 NSILLATDVAARGLDIPGIEHVIH----YH-------VPRTSEIYIHRSGRTARAN--NEGLTVVLIESDE 652 (1493)
Q Consensus 595 ~~VLVaTdv~~rGlDip~v~~VI~----yd-------~P~s~~~yiQR~GRagR~g--~~G~~i~l~~~~e 652 (1493)
++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|++++++.+
T Consensus 339 ~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 339 IKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp SCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred CeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 999999999999999999999999 99 8999999999999999988 4799999998765
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=433.01 Aligned_cols=292 Identities=20% Similarity=0.235 Sum_probs=219.3
Q ss_pred HCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhh
Q psy16310 168 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 247 (1493)
Q Consensus 168 ~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1493)
..|| +|||+|.+++|. +..|+|++++||||||||++|++|++..+
T Consensus 74 ~~gf-~pt~iQ~~ai~~-il~g~dvlv~ApTGSGKTl~~l~~il~~~--------------------------------- 118 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKR-IVQGKSFTMVAPTGVGKTTFGMMTALWLA--------------------------------- 118 (1104)
T ss_dssp HSSS-CCCHHHHHHHHH-HTTTCCEEECCSTTCCHHHHHHHHHHHHH---------------------------------
T ss_pred hcCC-CCCHHHHHHHHH-HHcCCCEEEEeCCCCcHHHHHHHHHHHHH---------------------------------
Confidence 3688 699999999995 55789999999999999998888877654
Q ss_pred cchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCH---HHHHHHhcCC-CCEEEeCcHHHHHH
Q psy16310 248 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMST---EKQLRILNKC-PHILVATPGRLWEF 323 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~---~~~~~~l~~~-~~IiV~TP~~L~~~ 323 (1493)
..++++|||+||++||.|+++.+..++ ..++++..++|+.+. ..++..+..+ ++|+|+||++|.++
T Consensus 119 ---------~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~ 188 (1104)
T 4ddu_A 119 ---------RKGKKSALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKN 188 (1104)
T ss_dssp ---------TTTCCEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHS
T ss_pred ---------hcCCeEEEEechHHHHHHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHH
Confidence 234679999999999999999999987 778999999999987 6666777665 99999999999888
Q ss_pred HHcCCccccccccccEEEEecCchh----------hh-cCChhh-HHHHHHhhccccCCCccccccccCCcchhhhhhhh
Q psy16310 324 IQLGHFHLTELYKINYLVIDETDRM----------IE-SGHFPE-LKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391 (1493)
Q Consensus 324 l~~~~~~~~~l~~i~~lViDEAh~l----------l~-~~~~~~-l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1493)
+.. ..+.++++|||||||++ ++ ++|... +..++..++... .
T Consensus 189 l~~-----l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~----------------------~ 241 (1104)
T 4ddu_A 189 REK-----LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGK----------------------I 241 (1104)
T ss_dssp HHH-----HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTS----------------------C
T ss_pred HHh-----hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccch----------------------h
Confidence 763 23558999999999754 45 788887 788887764100 0
Q ss_pred ccccCCCCCceEEEEeecc-chhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 392 VTMTETSQPRQTFVFSATL-THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 392 ~~~~~~~~~~q~il~SATl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
..........|+++||||+ |..+...+. ...+.. .+.
T Consensus 242 ~~~~~~~~~~q~ll~SAT~~p~~~~~~~~---------------------~~~l~i------~v~--------------- 279 (1104)
T 4ddu_A 242 YERPKNLKPGILVVSSATAKPRGIRPLLF---------------------RDLLNF------TVG--------------- 279 (1104)
T ss_dssp CCCCSSCCCCEEEEECBSSCCCSSTTHHH---------------------HHHTCC------CCC---------------
T ss_pred hhhhccCCCceEEEEcCCCCcHHHHHHHh---------------------hcceeE------Eec---------------
Confidence 0000112568999999994 443322110 000000 000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVF 550 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF 550 (1493)
........+......+ .+...+..++...++++|||
T Consensus 280 -----------------------------------------~~~~~~~~i~~~~~~~---~k~~~L~~ll~~~~~~~LVF 315 (1104)
T 4ddu_A 280 -----------------------------------------RLVSVARNITHVRISS---RSKEKLVELLEIFRDGILIF 315 (1104)
T ss_dssp -----------------------------------------BCCCCCCCEEEEEESC---CCHHHHHHHHHHHCSSEEEE
T ss_pred -----------------------------------------cCCCCcCCceeEEEec---CHHHHHHHHHHhcCCCEEEE
Confidence 0000001111111222 35556677777777899999
Q ss_pred ecchhhHHHHHHHHHhcCCCcc-ccccCCCHHHHHHHHHHHhcCCCeEEEE----echhhccCCCCC-CcEEEEecCCC
Q psy16310 551 CNSISSVKRLTQLLTMLKCSPL-PLHASMNQRQRLKNLDRFRDQNNSILLA----TDVAARGLDIPG-IEHVIHYHVPR 623 (1493)
Q Consensus 551 ~~s~~~a~~L~~~L~~~~~~~~-~lhg~~~~~~R~~vl~~Fr~g~~~VLVa----Tdv~~rGlDip~-v~~VI~yd~P~ 623 (1493)
|+++..++.++..|...++.+. .+||. |.+ ++.|++|+++|||| |++++||||+|+ |++|||||+|.
T Consensus 316 ~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 316 AQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp ESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred ECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 9999999999999999999998 99992 555 99999999999999 999999999999 99999999998
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=425.37 Aligned_cols=347 Identities=16% Similarity=0.203 Sum_probs=256.4
Q ss_pred cccccC--CCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 152 EWVKFN--IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 152 ~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
+|++++ |++.+.+.+...||..|+|+|.++++. +..++|++++||||||||++|.+|+++.+..
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~-i~~~~~~lv~apTGsGKT~~~~l~il~~~~~------------- 67 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEK-VFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------------- 67 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHH-HTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-------------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHH-HhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-------------
Confidence 477888 999999999999999999999999985 6788999999999999999999999987631
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
+.+++|++||++||.|+++.++.+. ..++++..++|+...... ....
T Consensus 68 -----------------------------~~~~l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~ 114 (702)
T 2p6r_A 68 -----------------------------GGKSLYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGD 114 (702)
T ss_dssp -----------------------------TCCEEEEESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTT
T ss_pred -----------------------------CCcEEEEeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccC
Confidence 3479999999999999999996543 458999999998654332 1236
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
++|+|+||++|..++.+... .+.++++|||||||++.++++...++.++.++...
T Consensus 115 ~~Iiv~Tpe~l~~~l~~~~~---~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~---------------------- 169 (702)
T 2p6r_A 115 CDIIVTTSEKADSLIRNRAS---WIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM---------------------- 169 (702)
T ss_dssp CSEEEEEHHHHHHHHHTTCS---GGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH----------------------
T ss_pred CCEEEECHHHHHHHHHcChh---HHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc----------------------
Confidence 79999999999998886432 35689999999999998888999999988776422
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1493)
.+..|++++|||+++. ..+ ..++... .... ... +..+....
T Consensus 170 --------~~~~~ii~lSATl~n~-~~~-----------------------~~~l~~~---~~~~--~~r-~~~l~~~~- 210 (702)
T 2p6r_A 170 --------NKALRVIGLSATAPNV-TEI-----------------------AEWLDAD---YYVS--DWR-PVPLVEGV- 210 (702)
T ss_dssp --------CTTCEEEEEECCCTTH-HHH-----------------------HHHTTCE---EEEC--CCC-SSCEEEEE-
T ss_pred --------CcCceEEEECCCcCCH-HHH-----------------------HHHhCCC---cccC--CCC-CccceEEE-
Confidence 3457999999999742 211 1121100 0000 000 00000000
Q ss_pred hhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEE
Q psy16310 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 549 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~II 549 (1493)
. ..+.. . ....... ....-.....+...+ ..++++||
T Consensus 211 ~--------------------------------~~~~~-~------~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~LV 247 (702)
T 2p6r_A 211 L--------------------------------CEGTL-E------LFDGAFS---TSRRVKFEELVEECV-AENGGVLV 247 (702)
T ss_dssp E--------------------------------CSSEE-E------EEETTEE---EEEECCHHHHHHHHH-HTTCCEEE
T ss_pred e--------------------------------eCCee-e------ccCcchh---hhhhhhHHHHHHHHH-hcCCCEEE
Confidence 0 00000 0 0000000 000000233333333 45789999
Q ss_pred EecchhhHHHHHHHHHhc------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCeEEE
Q psy16310 550 FCNSISSVKRLTQLLTML------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 599 (1493)
Q Consensus 550 F~~s~~~a~~L~~~L~~~------------------------------~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLV 599 (1493)
||+++..++.++..|... +.++..+||+|++.+|..+++.|++|.++|||
T Consensus 248 F~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlv 327 (702)
T 2p6r_A 248 FESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVV 327 (702)
T ss_dssp ECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEE
T ss_pred EcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEE
Confidence 999999999999888643 24678899999999999999999999999999
Q ss_pred EechhhccCCCCCCcEEEE----ec---CCCChHHHHHHHhccccCC--CCCeEEEEecCCc
Q psy16310 600 ATDVAARGLDIPGIEHVIH----YH---VPRTSEIYIHRSGRTARAN--NEGLTVVLIESDE 652 (1493)
Q Consensus 600 aTdv~~rGlDip~v~~VI~----yd---~P~s~~~yiQR~GRagR~g--~~G~~i~l~~~~e 652 (1493)
||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|++++++.+
T Consensus 328 aT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 328 ATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp ECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred ECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 9999999999999999998 77 7999999999999999988 4799999998866
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=426.82 Aligned_cols=424 Identities=16% Similarity=0.143 Sum_probs=226.7
Q ss_pred HHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHH
Q psy16310 163 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 242 (1493)
Q Consensus 163 ~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1493)
..++..+||..|+++|.++++. +..|+|+|+++|||||||++|++|+++++....
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~-~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~------------------------ 57 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALP-AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP------------------------ 57 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC------------------------
T ss_pred CCcccccCCCCccHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc------------------------
Confidence 3556788999999999999985 557899999999999999999999998875311
Q ss_pred HHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHH
Q psy16310 243 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWE 322 (1493)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~ 322 (1493)
...+.++|||+||++|+.|+.+.+..++...++++..++|+.....++..+..+++|+|+||++|.+
T Consensus 58 -------------~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~ 124 (696)
T 2ykg_A 58 -------------QGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 124 (696)
T ss_dssp -------------TTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHH
T ss_pred -------------cCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHH
Confidence 1123579999999999999999999998888999999999987655555566678999999999999
Q ss_pred HHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCce
Q psy16310 323 FIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQ 402 (1493)
Q Consensus 323 ~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 402 (1493)
.+..+... .+.++++|||||||++.+.+. +..++..+... ..........+
T Consensus 125 ~l~~~~~~--~l~~~~~vViDEaH~~~~~~~---~~~i~~~~l~~------------------------~~~~~~~~~~~ 175 (696)
T 2ykg_A 125 NLKKGTIP--SLSIFTLMIFDECHNTSKQHP---YNMIMFNYLDQ------------------------KLGGSSGPLPQ 175 (696)
T ss_dssp HHHTTSSC--CGGGCSEEEEETGGGCSTTCH---HHHHHHHHHHH------------------------HHTTCCSCCCE
T ss_pred HHhcCccc--ccccccEEEEeCCCcccCccc---HHHHHHHHHHH------------------------hhcccCCCCCe
Confidence 99876541 255789999999999975542 22222211000 00011134579
Q ss_pred EEEEeeccch--------hhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccC
Q psy16310 403 TFVFSATLTH--------SLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHD 474 (1493)
Q Consensus 403 ~il~SATl~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1493)
++++|||+.. .+..+..+... ...............+..+............. .....+.. .+....
T Consensus 176 il~LTATp~~~~~~~~~~~~~~i~~~~~~-l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~--~~~~~fs~--~~~~l~ 250 (696)
T 2ykg_A 176 VIGLTASVGVGDAKTTDEALDYICKLCAS-LDASVIATVKHNLEELEQVVYKPQKFFRKVES--RISDKFKY--IIAQLM 250 (696)
T ss_dssp EEEEESCCCCSSCCSHHHHHHHHHHHHHH-TTCCEEECCCTTHHHHHHHSCCCEEEEEECCC--CSCCHHHH--HHHHHH
T ss_pred EEEEeCccccCccccHHHHHHHHHHHHHh-cCCceEeecccchHHHHhhcCCCceeEEecCc--ccCChHHH--HHHHHH
Confidence 9999999972 11111111100 00000111111111111111100000000000 00000000 000000
Q ss_pred CcchhhHHHHhc-------CCCcch-hhHHHhhhh---cc------------------------------CCccccccc-
Q psy16310 475 EKDSYLYYFILQ-------HPGRTL-CEEIQDLLN---IK------------------------------SPKIVDLTE- 512 (1493)
Q Consensus 475 ~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~---~~------------------------------~~~~~~~~~- 512 (1493)
.....+...+.. ...... ...+..+.. .. .+.......
T Consensus 251 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~ 330 (696)
T 2ykg_A 251 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 330 (696)
T ss_dssp HHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhh
Confidence 000000000000 000000 000000000 00 000000000
Q ss_pred -------------c--cccccccccccc---------------c-cccCchhhHHHHHHhhC-----CCcEEEEecchhh
Q psy16310 513 -------------K--IGITKTLTESKI---------------L-CKHDEKDSYLYYFILQH-----PGRTLVFCNSISS 556 (1493)
Q Consensus 513 -------------~--~~~~~~~~~~~~---------------~-~~~~~k~~~l~~~l~~~-----~~~~IIF~~s~~~ 556 (1493)
. ............ . ...+.|...|..++... ++++||||+++.+
T Consensus 331 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~ 410 (696)
T 2ykg_A 331 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL 410 (696)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHH
Confidence 0 000000000000 0 02456777777777653 5799999999999
Q ss_pred HHHHHHHHHhcC----CCcccc--------ccCCCHHHHHHHHHHHhc-CCCeEEEEechhhccCCCCCCcEEEEecCCC
Q psy16310 557 VKRLTQLLTMLK----CSPLPL--------HASMNQRQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPR 623 (1493)
Q Consensus 557 a~~L~~~L~~~~----~~~~~l--------hg~~~~~~R~~vl~~Fr~-g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~ 623 (1493)
++.++..|...+ +.+..+ ||+|++.+|..+++.|++ |+.+|||||+++++|||+|+|++||+||+|.
T Consensus 411 ~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~ 490 (696)
T 2ykg_A 411 VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 490 (696)
T ss_dssp HHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEEESCC-
T ss_pred HHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCC
Confidence 999999999887 788877 569999999999999998 9999999999999999999999999999999
Q ss_pred ChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 624 TSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 624 s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|+..|+||+|| ||+ +.|.|++|++..+......++
T Consensus 491 s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~ 525 (696)
T 2ykg_A 491 NVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQIN 525 (696)
T ss_dssp -CCCC-----------CCCEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHHH
Confidence 99999999999 998 689999999988876655553
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=404.40 Aligned_cols=429 Identities=15% Similarity=0.149 Sum_probs=236.4
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
+|. +||++|..++| .+..|+ |+.++||||||++|++|++...+
T Consensus 71 lg~-~p~~VQ~~~i~-~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l--------------------------------- 113 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGM-VLNERC--IAEMRTGEGKTLTATLPAYLNAL--------------------------------- 113 (853)
T ss_dssp HSC-CCCHHHHHHHH-HHHSSE--EEECCTTSCHHHHHHHHHHHHHT---------------------------------
T ss_pred cCC-CCChHHHhhcc-cccCCe--eeeecCCchHHHHHHHHHHHHHH---------------------------------
Confidence 465 89999999999 555665 99999999999999999985432
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~~ 327 (1493)
.+..|+||+||++||.|++.++..++.++++++++++||.+.... .+..+++|+|||||+| .++|...
T Consensus 114 ---------~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~ 182 (853)
T 2fsf_A 114 ---------TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDN 182 (853)
T ss_dssp ---------TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHT
T ss_pred ---------cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhh
Confidence 234699999999999999999999999999999999999986533 3344689999999999 7888754
Q ss_pred Cc---cccccccccEEEEecCchhh-hcC---------------ChhhHHHHHHhhccccC---------------CCcc
Q psy16310 328 HF---HLTELYKINYLVIDETDRMI-ESG---------------HFPELKNILDRVTMTET---------------SQPR 373 (1493)
Q Consensus 328 ~~---~~~~l~~i~~lViDEAh~ll-~~~---------------~~~~l~~il~~l~~~~~---------------~~~~ 373 (1493)
.. ....++++.++|+||||+|| +.+ ++..+..|+..+..... +..+
T Consensus 183 ~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~r 262 (853)
T 2fsf_A 183 MAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSR 262 (853)
T ss_dssp TCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC------------------------------------------
T ss_pred hhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccc
Confidence 21 11235689999999999999 543 55677777776642100 0000
Q ss_pred ccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchh---hhhhhhhhccccccccccCCCchhhhHHhhhhccCCc
Q psy16310 374 QTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS---LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPK 450 (1493)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (1493)
+..+...........+..... -...-.+||||.+.. +...++..............++.+..+..+-....+.
T Consensus 263 qv~lte~g~~~~e~~l~~~~l----~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~g 338 (853)
T 2fsf_A 263 QVNLTERGLVLIEELLVKEGI----MDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQG 338 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEcHHHHHHHHHHHHhCCc----ccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCC
Confidence 100000000000000000000 000012899998642 2221110000000000000000000000000000000
Q ss_pred ccchhhhhccccccchh-hhhhccC----CcchhhHHHHh----cCCCcchhhHHHhhhhccCCcccccccccccccccc
Q psy16310 451 IVDLTEKIGITKTLTES-KILCKHD----EKDSYLYYFIL----QHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLT 521 (1493)
Q Consensus 451 ~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1493)
..+.. ++...+... .+..... ..-.+..|+-. ..-..+...+...+...+...+..+...........
T Consensus 339 -rr~sd--GLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~ 415 (853)
T 2fsf_A 339 -RRWSD--GLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDL 415 (853)
T ss_dssp ---------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEEC
T ss_pred -Cccch--hhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecC
Confidence 00000 000000000 0000000 00011111100 000001111112222222222222222222222222
Q ss_pred ccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEE
Q psy16310 522 ESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598 (1493)
Q Consensus 522 ~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VL 598 (1493)
...+.+....|...+...+.. .+.++||||+|+..++.|+..|...|+.+.++||++.+.++..+.++|+.| .|+
T Consensus 416 ~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~Vt 493 (853)
T 2fsf_A 416 PDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVT 493 (853)
T ss_dssp CCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEE
T ss_pred CcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEE
Confidence 233455667788888877743 356899999999999999999999999999999999999988888999988 699
Q ss_pred EEechhhccCCCCCC-------------------------------------cEEEEecCCCChHHHHHHHhccccCCCC
Q psy16310 599 LATDVAARGLDIPGI-------------------------------------EHVIHYHVPRTSEIYIHRSGRTARANNE 641 (1493)
Q Consensus 599 VaTdv~~rGlDip~v-------------------------------------~~VI~yd~P~s~~~yiQR~GRagR~g~~ 641 (1493)
||||+|+||+||+.. .+||+|+.|.|...|+||+|||||+|.+
T Consensus 494 IATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~ 573 (853)
T 2fsf_A 494 IATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDA 573 (853)
T ss_dssp EEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCC
T ss_pred EecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCC
Confidence 999999999999974 6999999999999999999999999999
Q ss_pred CeEEEEecCCcch
Q psy16310 642 GLTVVLIESDEIP 654 (1493)
Q Consensus 642 G~~i~l~~~~e~~ 654 (1493)
|.+++|++.+|..
T Consensus 574 G~s~~fls~eD~l 586 (853)
T 2fsf_A 574 GSSRFYLSMEDAL 586 (853)
T ss_dssp EEEEEEEETTSGG
T ss_pred eeEEEEecccHHH
Confidence 9999999988743
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-39 Score=424.72 Aligned_cols=359 Identities=21% Similarity=0.193 Sum_probs=209.6
Q ss_pred HCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 785 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 785 ~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
-.|+..|+|+|.++|+.+ ..|+|+++++|||||||++|++|+++.+....
T Consensus 243 ~~g~~~l~~~Q~~~i~~~-l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~----------------------------- 292 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPA-INGKNALICAPTGSGKTFVSILICEHHFQNMP----------------------------- 292 (797)
T ss_dssp -----CCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----------------------------
T ss_pred hcCCCCCCHHHHHHHHHH-HhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-----------------------------
Confidence 358999999999999955 46789999999999999999999998875421
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhC
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~ 944 (1493)
...+.++|||+||++|+.|+++.++.++...++++..++|+.....+...+..+++|+|+||++|.+++..+
T Consensus 293 --------~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~ 364 (797)
T 4a2q_A 293 --------AGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG 364 (797)
T ss_dssp --------SSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSS
T ss_pred --------ccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhc
Confidence 122567999999999999999999999888889999999999877766666678899999999999999865
Q ss_pred cCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch-------HhHH---hhhccCc
Q psy16310 945 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL-------KNSL---NLKKGQS 1014 (1493)
Q Consensus 945 ~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~-------~~~~---~~~~~~~ 1014 (1493)
.. ..+.++++|||||||++...+.+..+...+-........+..+++++|||++... ...+ ....+..
T Consensus 365 ~~--~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~ 442 (797)
T 4a2q_A 365 TL--TSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ 442 (797)
T ss_dssp SC--CCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS
T ss_pred cc--cccccCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCc
Confidence 53 2466889999999999987654333221111111112245689999999996321 0100 0000000
Q ss_pred CcccccCCCchhHHHHhHhccCCCcEEeccccc------------------------------------cc---------
Q psy16310 1015 KSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI------------------------------------GI--------- 1049 (1493)
Q Consensus 1015 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------------------------------~~--------- 1049 (1493)
.+.........+...+.............. ..
T Consensus 443 ---~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~ 519 (797)
T 4a2q_A 443 ---AISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVV 519 (797)
T ss_dssp ---EEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHH
T ss_pred ---EEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHH
Confidence 000000011111111111111110000000 00
Q ss_pred ----------c----------------cc----------------------cee--------------------------
Q psy16310 1050 ----------T----------------KT----------------------LTE-------------------------- 1055 (1493)
Q Consensus 1050 ----------~----------------~~----------------------~~~-------------------------- 1055 (1493)
. .. +..
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 599 (797)
T 4a2q_A 520 TQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEP 599 (797)
T ss_dssp HHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHH
T ss_pred HHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHH
Confidence 0 00 000
Q ss_pred -----eEEEecccchhhHHHHHHHh-----CCCcEEEEecchhhHHHHHHHHHhc------------CCCccccccCCCH
Q psy16310 1056 -----SKILCKHDEKDSYLYYFILQ-----HPGRTLVFCNSISSVKRLTQLLTML------------KCSPLPLHASMNQ 1113 (1493)
Q Consensus 1056 -----~~~~~~~~~k~~~l~~~l~~-----~~~~~IVF~~s~~~~~~l~~~L~~~------------~~~~~~lhg~m~~ 1113 (1493)
.........|...|..++.. .++++||||+++..++.++..|... |.....+||+|++
T Consensus 600 ~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~ 679 (797)
T 4a2q_A 600 ELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTL 679 (797)
T ss_dssp HHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC--------------
T ss_pred HHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCH
Confidence 00000023455556666543 3589999999999999999999873 5666778999999
Q ss_pred HHHHHHHHHHhc-CCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHH
Q psy16310 1114 RQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPL 1188 (1493)
Q Consensus 1114 ~~R~~~~~~F~~-g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~ 1188 (1493)
.+|..++++|++ |+++|||||+++++|||+|+|++||+||+|.|+..|+||+|| ||. +.|.+++|+++.+...
T Consensus 680 ~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 680 PSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (797)
T ss_dssp --------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHHH
T ss_pred HHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHH
Confidence 999999999999 999999999999999999999999999999999999999999 999 8999999998876543
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=415.20 Aligned_cols=414 Identities=17% Similarity=0.158 Sum_probs=233.5
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
+|+|+|.++++. +..++|+|+++|||||||++|++|+++.+....
T Consensus 4 ~~~~~Q~~~i~~-~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---------------------------------- 48 (555)
T 3tbk_A 4 KPRNYQLELALP-AKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---------------------------------- 48 (555)
T ss_dssp CCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----------------------------------
T ss_pred CCcHHHHHHHHH-HhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc----------------------------------
Confidence 699999999984 557899999999999999999999998875421
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcccc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~ 332 (1493)
...+.++|||+||++|+.|+++.+..++...++++..++|+.....++..+..+++|+|+||++|.+++..+.. .
T Consensus 49 ---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~--~ 123 (555)
T 3tbk_A 49 ---CGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAI--P 123 (555)
T ss_dssp ---SSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSS--C
T ss_pred ---cCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcc--c
Confidence 12256799999999999999999999988889999999999877666666666789999999999999987654 1
Q ss_pred ccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccch
Q psy16310 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 412 (1493)
Q Consensus 333 ~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~ 412 (1493)
.+.++++|||||||++.+.+. +..++..+... ..........|+++||||++.
T Consensus 124 ~~~~~~~vViDEah~~~~~~~---~~~~~~~~~~~------------------------~~~~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 124 SLSVFTLMIFDECHNTSKNHP---YNQIMFRYLDH------------------------KLGESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp CGGGCSEEEETTGGGCSTTCH---HHHHHHHHHHH------------------------HTSSCCSCCCEEEEEESCCCC
T ss_pred ccccCCEEEEECccccCCcch---HHHHHHHHHHh------------------------hhccccCCCCeEEEEecCccc
Confidence 355789999999999987653 22322221110 000111345799999999964
Q ss_pred hh--------hhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhh--------hhhccCCc
Q psy16310 413 SL--------KNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESK--------ILCKHDEK 476 (1493)
Q Consensus 413 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 476 (1493)
.- ..+..+... .....+.........+..+............. .....+.... .+......
T Consensus 177 ~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (555)
T 3tbk_A 177 GDAKTAEEAMQHICKLCAA-LDASVIATVRDNVAELEQVVYKPQKISRKVAS--RTSNTFKCIISQLMKETEKLAKDVSE 253 (555)
T ss_dssp TTCCSHHHHHHHHHHHHHH-TTCSEEECCCSCHHHHHTTCCCCCEEEEECCC--CSCCHHHHHHHHHHHHHHHHHHTSCH
T ss_pred CccccHHHHHHHHHHHHHh-cCCeeeeccccCHHHHHhhcCCCceEEEEecC--cccChHHHHHHHHHHHHHHHHHHHHH
Confidence 21 100000000 00000000000000111100000000000000 0000000000 00000000
Q ss_pred chhhHHHHhcCCCcchhh-----HHHhhhh---ccC-Cc--------------------------------cc-------
Q psy16310 477 DSYLYYFILQHPGRTLCE-----EIQDLLN---IKS-PK--------------------------------IV------- 508 (1493)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~-~~--------------------------------~~------- 508 (1493)
.+. .+.......... .+..+.. ... +. ..
T Consensus 254 --~l~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 330 (555)
T 3tbk_A 254 --ELG-KLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLK 330 (555)
T ss_dssp --HHH-GGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred --hhh-hhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 000 000000000000 0000000 000 00 00
Q ss_pred cccccc---c--------------ccccccc-cccccccCchhhHHHHHHhh-----CCCcEEEEecchhhHHHHHHHHH
Q psy16310 509 DLTEKI---G--------------ITKTLTE-SKILCKHDEKDSYLYYFILQ-----HPGRTLVFCNSISSVKRLTQLLT 565 (1493)
Q Consensus 509 ~~~~~~---~--------------~~~~~~~-~~~~~~~~~k~~~l~~~l~~-----~~~~~IIF~~s~~~a~~L~~~L~ 565 (1493)
...... . ....+.. .......+.|...|..++.. .++++||||+++.+++.++..|.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~ 410 (555)
T 3tbk_A 331 AFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIE 410 (555)
T ss_dssp HHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHh
Confidence 000000 0 0000000 00011235677777777754 35899999999999999999998
Q ss_pred hcC------------CCccccccCCCHHHHHHHHHHHhc-CCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHH
Q psy16310 566 MLK------------CSPLPLHASMNQRQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS 632 (1493)
Q Consensus 566 ~~~------------~~~~~lhg~~~~~~R~~vl~~Fr~-g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~ 632 (1493)
..+ .+...+||+|++.+|..+++.|++ |+++|||||+++++|||+|+|++||+||+|.|+..|+||+
T Consensus 411 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~ 490 (555)
T 3tbk_A 411 ENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTR 490 (555)
T ss_dssp HCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSS
T ss_pred hCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhc
Confidence 763 455567779999999999999999 9999999999999999999999999999999999999999
Q ss_pred hccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 633 GRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 633 GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
|| ||. +.|.|++|+++.+......++.
T Consensus 491 GR-gR~-~~g~~~~l~~~~~~~~~~~~~~ 517 (555)
T 3tbk_A 491 GR-GRA-RDSKCFLLTSSADVIEKEKANM 517 (555)
T ss_dssp CC-CTT-TSCEEEEEESCHHHHHHHHHHH
T ss_pred Cc-CcC-CCceEEEEEcCCCHHHHHHHhh
Confidence 99 998 7999999999988776655543
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-39 Score=442.24 Aligned_cols=346 Identities=21% Similarity=0.261 Sum_probs=255.0
Q ss_pred CCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 787 g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
||++++++|.+++|.++..++|++++||||||||++|.+||++.+........
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~--------------------------- 128 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDG--------------------------- 128 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTS---------------------------
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccc---------------------------
Confidence 89999999999999999889999999999999999999999999865422110
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcC
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~ 946 (1493)
.....+.++||++||++||.|+++.|.+.+...+++|..++|+.....+. ...++|+|+|||++..++.. ..
T Consensus 129 ----~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~-~~ 200 (1724)
T 4f92_B 129 ----TINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRK-GG 200 (1724)
T ss_dssp ----SCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTS-ST
T ss_pred ----cccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcC-Cc
Confidence 12245678999999999999999999998888999999999987654321 23579999999997444433 33
Q ss_pred ccccccceeEEEecccchhccCCChhHHHHHHHHhcc--cCCCCCceEEEEecccccc--hHhHHhhhccCcCcccccCC
Q psy16310 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTM--TETSQPRQTFVFSATLTHS--LKNSLNLKKGQSKSKKVSKG 1022 (1493)
Q Consensus 947 ~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~--~~~~~~~q~ll~SATl~~~--~~~~~~~~~~~~~~~~~~~~ 1022 (1493)
....+..+++|||||+|.+-+ .++..++.++.++.. ...+.+.|++++|||+|+. +..++
T Consensus 201 ~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL--------------- 264 (1724)
T 4f92_B 201 ERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFL--------------- 264 (1724)
T ss_dssp THHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHT---------------
T ss_pred cchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHh---------------
Confidence 233477899999999996544 677788877765432 1224678999999999853 22222
Q ss_pred CchhHHHHhHhccCCCc-EEeccccccccccceeeEEEecccch-------hhHHHHHHHhC--CCcEEEEecchhhHHH
Q psy16310 1023 DPSIKRLQDLLNIKSPK-IVDLTEKIGITKTLTESKILCKHDEK-------DSYLYYFILQH--PGRTLVFCNSISSVKR 1092 (1493)
Q Consensus 1023 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~k-------~~~l~~~l~~~--~~~~IVF~~s~~~~~~ 1092 (1493)
....+. ...+. ....+-.+.+.++....... ...+...+... .+++||||+|++.|+.
T Consensus 265 -----------~~~~~~~~~~~~-~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~ 332 (1724)
T 4f92_B 265 -----------RVDPAKGLFYFD-NSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGK 332 (1724)
T ss_dssp -----------TCCHHHHEEECC-GGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHH
T ss_pred -----------CCCCCCCeEEEC-CCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHH
Confidence 110000 00000 00111122222222211111 11222223332 5689999999999999
Q ss_pred HHHHHHhc-------------------------------------CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeeh
Q psy16310 1093 LTQLLTML-------------------------------------KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 1135 (1493)
Q Consensus 1093 l~~~L~~~-------------------------------------~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTd 1135 (1493)
++..|... ..+++.|||+|++.+|..+++.|++|.++|||||+
T Consensus 333 ~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTs 412 (1724)
T 4f92_B 333 TARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTA 412 (1724)
T ss_dssp HHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECH
T ss_pred HHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcc
Confidence 88887531 24577899999999999999999999999999999
Q ss_pred hhhccccCCCccEEEE----ecC------CCChhHHHHHHhccCCCCC--CCeEEEEecCCCHHHHHHHHHh
Q psy16310 1136 VAARGLDIPGIEHVIH----YHV------PRTSEIYIHRSGRTARANN--EGLTLVLIESDEIPLYIKMFNS 1195 (1493)
Q Consensus 1136 v~~~GiDip~v~~VI~----~d~------p~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~e~~~~~~~~~~ 1195 (1493)
++++|||+|++++||. |+. |-+..+|+||+|||||+|. .|.+++++.+.+...+..++..
T Consensus 413 TLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~ 484 (1724)
T 4f92_B 413 TLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQ 484 (1724)
T ss_dssp HHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTT
T ss_pred hhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcC
Confidence 9999999999999996 554 5689999999999999874 7999999999998888877543
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=417.72 Aligned_cols=346 Identities=18% Similarity=0.185 Sum_probs=247.8
Q ss_pred HHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhh
Q psy16310 784 YQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863 (1493)
Q Consensus 784 ~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1493)
...+|+ |+|+|.++|+. +..+++++++||||||||++|.+|++..+.
T Consensus 81 ~~~~f~-L~~~Q~eai~~-l~~g~~vLV~apTGSGKTlva~lai~~~l~------------------------------- 127 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISC-IDRGESVLVSAHTSAGKTVVAEYAIAQSLK------------------------------- 127 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHH-HHHTCEEEEECCTTSCHHHHHHHHHHHHHH-------------------------------
T ss_pred HhCCCC-CCHHHHHHHHH-HHcCCCEEEECCCCCChHHHHHHHHHHHhc-------------------------------
Confidence 345775 99999999985 667899999999999999999999987652
Q ss_pred hcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHh
Q psy16310 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 943 (1493)
Q Consensus 864 ~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~ 943 (1493)
.+.++||++||++|+.|+++.+..++. .++.++|+.... ..++|+|+||++|.+++.+
T Consensus 128 -----------~g~rvL~l~PtkaLa~Q~~~~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~ 185 (1010)
T 2xgj_A 128 -----------NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYR 185 (1010)
T ss_dssp -----------TTCEEEEEESSHHHHHHHHHHHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHH
T ss_pred -----------cCCeEEEECChHHHHHHHHHHHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHc
Confidence 235799999999999999999999764 678888887532 3579999999999998876
Q ss_pred CcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH--hHHhhhccCcCcccccC
Q psy16310 944 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK--NSLNLKKGQSKSKKVSK 1021 (1493)
Q Consensus 944 ~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~--~~~~~~~~~~~~~~~~~ 1021 (1493)
+.. .+.++++|||||||+|.++++...+..++..+ +...|++++|||+++... .++....+.........
T Consensus 186 ~~~---~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l-----~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~ 257 (1010)
T 2xgj_A 186 GSE---VMREVAWVIFDEVHYMRDKERGVVWEETIILL-----PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN 257 (1010)
T ss_dssp TCT---TGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS-----CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEEC
T ss_pred Ccc---hhhcCCEEEEechhhhcccchhHHHHHHHHhc-----CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecC
Confidence 543 46789999999999999999988888888877 467899999999987532 22221111100000000
Q ss_pred CCchhHHHHhHhcc-C-CCcEEeccccccc--------ccccee------------eEE----Ee---c--ccchhhHHH
Q psy16310 1022 GDPSIKRLQDLLNI-K-SPKIVDLTEKIGI--------TKTLTE------------SKI----LC---K--HDEKDSYLY 1070 (1493)
Q Consensus 1022 ~~~~~~~l~~~~~~-~-~~~~~~~~~~~~~--------~~~~~~------------~~~----~~---~--~~~k~~~l~ 1070 (1493)
..+. .+...+.. . ............. ...+.. ... .. . .......++
T Consensus 258 ~rp~--pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~ 335 (1010)
T 2xgj_A 258 FRPT--PLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIV 335 (1010)
T ss_dssp CCSS--CEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHH
T ss_pred CCcc--cceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHH
Confidence 0000 00000000 0 0000000000000 000000 000 00 0 012223344
Q ss_pred HHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCC---------------------------------------ccccccC
Q psy16310 1071 YFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCS---------------------------------------PLPLHAS 1110 (1493)
Q Consensus 1071 ~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~---------------------------------------~~~lhg~ 1110 (1493)
..+... ..++||||+|+..|+.++..|...++. +..|||+
T Consensus 336 ~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hgg 415 (1010)
T 2xgj_A 336 KMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSG 415 (1010)
T ss_dssp HHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTT
T ss_pred HHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCC
Confidence 444433 459999999999999999999775442 6679999
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEE----ecC----CCChhHHHHHHhccCCCCC--CCeEEEE
Q psy16310 1111 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH----YHV----PRTSEIYIHRSGRTARANN--EGLTLVL 1180 (1493)
Q Consensus 1111 m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~----~d~----p~s~~~yiqr~GR~gR~g~--~G~~i~l 1180 (1493)
|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||. |.+...|+||+|||||.|. .|.|+++
T Consensus 416 l~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l 495 (1010)
T 2xgj_A 416 LLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMM 495 (1010)
T ss_dssp SCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999 999 8999999999999999996 5999999
Q ss_pred ecCC-CHHHHHHHHH
Q psy16310 1181 IESD-EIPLYIKMFN 1194 (1493)
Q Consensus 1181 ~~~~-e~~~~~~~~~ 1194 (1493)
+++. +...+.+++.
T Consensus 496 ~~~~~e~~~~~~l~~ 510 (1010)
T 2xgj_A 496 IDEKMEPQVAKGMVK 510 (1010)
T ss_dssp ECSCCCHHHHHHHHS
T ss_pred ECCCCCHHHHHHHHh
Confidence 9876 6666666643
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-39 Score=422.73 Aligned_cols=421 Identities=19% Similarity=0.162 Sum_probs=217.5
Q ss_pred HCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhh
Q psy16310 168 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 247 (1493)
Q Consensus 168 ~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1493)
-.|+..|+|+|.++++. +..++|+|+++|||||||++|++|+++.+....
T Consensus 243 ~~g~~~l~~~Q~~~i~~-~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~----------------------------- 292 (797)
T 4a2q_A 243 VYETKKARSYQIELAQP-AINGKNALICAPTGSGKTFVSILICEHHFQNMP----------------------------- 292 (797)
T ss_dssp -----CCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----------------------------
T ss_pred hcCCCCCCHHHHHHHHH-HHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-----------------------------
Confidence 35888999999999984 557799999999999999999999998875421
Q ss_pred cchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcC
Q psy16310 248 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~ 327 (1493)
...+.++|||+||++|+.|+++.+..++...++++..++|+.....++..+..+++|+|+||++|.+.+..+
T Consensus 293 --------~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~ 364 (797)
T 4a2q_A 293 --------AGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG 364 (797)
T ss_dssp --------SSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSS
T ss_pred --------ccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhc
Confidence 122567999999999999999999999887789999999999877777777778999999999999999865
Q ss_pred CccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEe
Q psy16310 328 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407 (1493)
Q Consensus 328 ~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~S 407 (1493)
.. ..+.++++|||||||++...+.+ ..++..+.... .....+..|+++||
T Consensus 365 ~~--~~~~~~~~iViDEaH~~~~~~~~---~~i~~~~~~~~-------------------------~~~~~~~~~~l~lS 414 (797)
T 4a2q_A 365 TL--TSLSIFTLMIFDECHNTTGNHPY---NVLMTRYLEQK-------------------------FNSASQLPQILGLT 414 (797)
T ss_dssp SC--CCGGGCSEEEETTGGGCSTTSHH---HHHHHHHHHHH-------------------------HTTCCCCCEEEEEE
T ss_pred cc--cccccCCEEEEECccccCCCccH---HHHHHHHHHHh-------------------------hccCCCCCeEEEEc
Confidence 44 13558899999999999765543 33332221100 00113457899999
Q ss_pred eccchh-----------hhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhh--------------------
Q psy16310 408 ATLTHS-----------LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE-------------------- 456 (1493)
Q Consensus 408 ATl~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 456 (1493)
||++.. +..+...... ..+.........+..++............
T Consensus 415 ATp~~~~~~~~~~~~~~i~~l~~~L~~----~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 490 (797)
T 4a2q_A 415 ASVGVGNAKNIEETIEHICSLCSYLDI----QAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEAL 490 (797)
T ss_dssp SCCCCTTCCSHHHHHHHHHHHHHHHTC----SEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHH
T ss_pred CCccccccccHHHHHHHHHHHHHhcCC----cEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHH
Confidence 999531 1111110000 00000000011111111100000000000
Q ss_pred --hh-------ccc-----c-ccchhhhh-------hccCCc--chh--------hHH--------HH-hcCCCcchhhH
Q psy16310 457 --KI-------GIT-----K-TLTESKIL-------CKHDEK--DSY--------LYY--------FI-LQHPGRTLCEE 495 (1493)
Q Consensus 457 --~~-------~~~-----~-~~~~~~~~-------~~~~~~--~~~--------~~~--------~~-~~~~~~~~~~~ 495 (1493)
.. ... . .+...... ...... ... ... .+ ...........
T Consensus 491 ~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 570 (797)
T 4a2q_A 491 MRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSY 570 (797)
T ss_dssp HHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHH
Confidence 00 000 0 00000000 000000 000 000 00 00000000000
Q ss_pred HHhhhh----cc-CCccccccccc-ccccc-ccccccccccCchhhHHHHHHhh-----CCCcEEEEecchhhHHHHHHH
Q psy16310 496 IQDLLN----IK-SPKIVDLTEKI-GITKT-LTESKILCKHDEKDSYLYYFILQ-----HPGRTLVFCNSISSVKRLTQL 563 (1493)
Q Consensus 496 ~~~~~~----~~-~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~k~~~l~~~l~~-----~~~~~IIF~~s~~~a~~L~~~ 563 (1493)
+..... .. ......+.... ..... ..........+.|...|..+|.. .+.++||||+++..+..|+.+
T Consensus 571 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~ 650 (797)
T 4a2q_A 571 LTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKC 650 (797)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHH
Confidence 000000 00 00000000000 00000 00001111246677777777764 358999999999999999999
Q ss_pred HHhc------------CCCccccccCCCHHHHHHHHHHHhc-CCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHH
Q psy16310 564 LTML------------KCSPLPLHASMNQRQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630 (1493)
Q Consensus 564 L~~~------------~~~~~~lhg~~~~~~R~~vl~~Fr~-g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQ 630 (1493)
|... |.+...+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+||+|.|+..|+|
T Consensus 651 L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQ 730 (797)
T 4a2q_A 651 MEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQ 730 (797)
T ss_dssp HHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHT
T ss_pred HHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHH
Confidence 9763 5566778999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHhccccCCCCCeEEEEecCCcchhhhhhhhh
Q psy16310 631 RSGRTARANNEGLTVVLIESDEIPLKTKFNLQ 662 (1493)
Q Consensus 631 R~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~ 662 (1493)
|+|| ||. +.|.|++|+++.+......++..
T Consensus 731 r~GR-GR~-~~g~~i~l~~~~~~ee~~~~~~~ 760 (797)
T 4a2q_A 731 VRGR-GRA-AGSKCILVTSKTEVVENEKCNRY 760 (797)
T ss_dssp C---------CCCEEEEECCHHHHHHHHHHHH
T ss_pred hcCC-CCC-CCceEEEEEeCCcHHHHHHHHHH
Confidence 9999 999 79999999999887665544433
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=395.04 Aligned_cols=397 Identities=17% Similarity=0.171 Sum_probs=260.2
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
+|+ +||++|..++| .+..|+ |+.++||+|||++|+||++...+
T Consensus 108 lG~-rP~~VQ~~~ip-~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL--------------------------------- 150 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAA-ALHLGN--VAEMKTGEGKTLTCVLPAYLNAL--------------------------------- 150 (922)
T ss_dssp HSC-CCCHHHHHHHH-HHHTTE--EEECCTTSCHHHHTHHHHHHHHT---------------------------------
T ss_pred cCC-CCCHHHHHHHH-hHhcCC--EEEecCCCccHHHHHHHHHHHHH---------------------------------
Confidence 588 99999999999 556665 99999999999999999974332
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~~ 327 (1493)
.+..|+||+||++||.|+++++..++.++++++++++||.+...... ..++||+|+||++| .++|...
T Consensus 151 ---------~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~--~y~~DIvygTpgrlgfDyLrD~ 219 (922)
T 1nkt_A 151 ---------AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRV--AYNADITYGTNNEFGFDYLRDN 219 (922)
T ss_dssp ---------TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHT
T ss_pred ---------hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH--hcCCCEEEECchHhhHHHHHhh
Confidence 12359999999999999999999999999999999999998654433 33589999999999 7888654
Q ss_pred Cc---cccccccccEEEEecCchhh-hc---------------CChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 328 HF---HLTELYKINYLVIDETDRMI-ES---------------GHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 328 ~~---~~~~l~~i~~lViDEAh~ll-~~---------------~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
.. ....++.+.++||||||.|| +. +|+..+..|+..+.... +
T Consensus 220 m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~------------d------- 280 (922)
T 1nkt_A 220 MAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDV------------H------- 280 (922)
T ss_dssp TCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTT------------T-------
T ss_pred hhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccc------------c-------
Confidence 21 12236689999999999999 43 46678888887774210 0
Q ss_pred hhhccccCCCCCceEE-----------------EEeeccch---hhhhhhhhhccccccccccCCCch------------
Q psy16310 389 LDRVTMTETSQPRQTF-----------------VFSATLTH---SLKNSLNLKKGQSKSKKVSKGDPS------------ 436 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~i-----------------l~SATl~~---~~~~~~~~~~~~~~~~~~~~~~~~------------ 436 (1493)
.......+|++ +||||.+. .+...+...............++.
T Consensus 281 -----y~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m 355 (922)
T 1nkt_A 281 -----YEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVL 355 (922)
T ss_dssp -----EEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBC
T ss_pred -----ceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCccc
Confidence 00012446776 88999874 332222110000000000000000
Q ss_pred -----hhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHh----cCCCcchhhHHHhhhhccCCcc
Q psy16310 437 -----IKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL----QHPGRTLCEEIQDLLNIKSPKI 507 (1493)
Q Consensus 437 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 507 (1493)
-.-+...+..+.. +.+....... ..-.+..++.. ..-..+...+...+...+...+
T Consensus 356 ~grr~sdGLHQaieaKe~--V~I~~e~~Tl-------------atIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~v 420 (922)
T 1nkt_A 356 IGRRYNEGMHQAIEAKEH--VEIKAENQTL-------------ATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGV 420 (922)
T ss_dssp TTCCCSTTHHHHHHHHTT--CCCCCCEEEE-------------EEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEE
T ss_pred CCccccchhhHHHhcccc--cccccccccc-------------ceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCe
Confidence 0000000000000 0000000000 00011111100 0000111112222333333333
Q ss_pred ccccccccccccccccccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHH
Q psy16310 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584 (1493)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~ 584 (1493)
..+..............+.+....|...+...+.. .+.++||||+|+..++.|+..|...|+.+..+||++.+.++.
T Consensus 421 v~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~ 500 (922)
T 1nkt_A 421 VSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEAT 500 (922)
T ss_dssp EECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHH
T ss_pred EEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHH
Confidence 32222222212222223455566788777777643 356899999999999999999999999999999999888888
Q ss_pred HHHHHHhcCCCeEEEEechhhccCCCCCC---------------------------------------------------
Q psy16310 585 KNLDRFRDQNNSILLATDVAARGLDIPGI--------------------------------------------------- 613 (1493)
Q Consensus 585 ~vl~~Fr~g~~~VLVaTdv~~rGlDip~v--------------------------------------------------- 613 (1493)
.+.+.|+.| .|+||||+|+||+||+.+
T Consensus 501 iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 578 (922)
T 1nkt_A 501 IIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAG 578 (922)
T ss_dssp HHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcC
Confidence 888888888 699999999999999975
Q ss_pred -cEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcch
Q psy16310 614 -EHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIP 654 (1493)
Q Consensus 614 -~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~ 654 (1493)
.+||+|+.|.|...|+||+|||||.|.+|.+++|++.+|.-
T Consensus 579 GlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l 620 (922)
T 1nkt_A 579 GLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDEL 620 (922)
T ss_dssp SEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHH
T ss_pred CcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHH
Confidence 59999999999999999999999999999999999987753
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-39 Score=428.08 Aligned_cols=326 Identities=19% Similarity=0.253 Sum_probs=243.2
Q ss_pred HCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhh
Q psy16310 168 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 247 (1493)
Q Consensus 168 ~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1493)
.+||. | ++|.++||. +..|+|+|++||||||||+ |++|++..+..
T Consensus 53 ~~g~~-p-~iQ~~ai~~-il~g~dvlv~apTGSGKTl-~~lp~l~~~~~------------------------------- 97 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKR-ILRKESFAATAPTGVGKTS-FGLAMSLFLAL------------------------------- 97 (1054)
T ss_dssp TTCSC-C-HHHHHHHHH-HHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------------------------------
T ss_pred hcCCC-H-HHHHHHHHH-HHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------------------------------
Confidence 47999 9 999999995 5578999999999999998 99999877642
Q ss_pred cchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCe----EEEEEEcCCCHHHH---HHHhcCCCCEEEeCcHHH
Q psy16310 248 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPV----KVACVVGGMSTEKQ---LRILNKCPHILVATPGRL 320 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i----~v~~~~G~~~~~~~---~~~l~~~~~IiV~TP~~L 320 (1493)
.++++|||+||++||.|+++.+..++...++ ++..++|+.+...+ ...+.. ++|+|+||++|
T Consensus 98 ----------~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L 166 (1054)
T 1gku_B 98 ----------KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFL 166 (1054)
T ss_dssp ----------TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHH
T ss_pred ----------cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHH
Confidence 3467999999999999999999999988888 89999999887663 444455 89999999999
Q ss_pred HHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCC
Q psy16310 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQP 400 (1493)
Q Consensus 321 ~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1493)
.+++.+ |.++++|||||||+|++ +...+..++..+........ ...+..
T Consensus 167 ~~~l~~-------L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~----------------------~~~~~~ 215 (1054)
T 1gku_B 167 SKHYRE-------LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKT----------------------KSWVGE 215 (1054)
T ss_dssp HHCSTT-------SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTT----------------------TEEEEC
T ss_pred HHHHHH-------hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhh----------------------hhcccC
Confidence 887653 45889999999999987 67888888887743211000 111345
Q ss_pred ceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhh
Q psy16310 401 RQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL 480 (1493)
Q Consensus 401 ~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1493)
.|+++||||++.. ..+.... ....... .+..
T Consensus 216 ~q~~l~SAT~t~~-~~~~~~~------------------~~~~~~i------~v~~------------------------ 246 (1054)
T 1gku_B 216 ARGCLMVSTATAK-KGKKAEL------------------FRQLLNF------DIGS------------------------ 246 (1054)
T ss_dssp CSSEEEECCCCSC-CCTTHHH------------------HHHHHCC------CCSC------------------------
T ss_pred CceEEEEecCCCc-hhHHHHH------------------hhcceEE------EccC------------------------
Confidence 7899999999865 2211100 0000000 0000
Q ss_pred HHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHH
Q psy16310 481 YYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRL 560 (1493)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L 560 (1493)
.......+..... ...+...+..++...++++||||+++..|+.+
T Consensus 247 --------------------------------~~~~~~~i~~~~~---~~~k~~~L~~ll~~~~~~~LVF~~t~~~a~~l 291 (1054)
T 1gku_B 247 --------------------------------SRITVRNVEDVAV---NDESISTLSSILEKLGTGGIIYARTGEEAEEI 291 (1054)
T ss_dssp --------------------------------CEECCCCEEEEEE---SCCCTTTTHHHHTTSCSCEEEEESSHHHHHHH
T ss_pred --------------------------------cccCcCCceEEEe---chhHHHHHHHHHhhcCCCEEEEEcCHHHHHHH
Confidence 0000000000001 23445556667777678999999999999999
Q ss_pred HHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEE----echhhccCCCCCC-cEEEEecCC-------------
Q psy16310 561 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA----TDVAARGLDIPGI-EHVIHYHVP------------- 622 (1493)
Q Consensus 561 ~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVa----Tdv~~rGlDip~v-~~VI~yd~P------------- 622 (1493)
+..|... +.+..+||+|. .+++.|++|+.+|||| |+++++|||+|+| ++||+||+|
T Consensus 292 ~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~ 365 (1054)
T 1gku_B 292 YESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLS 365 (1054)
T ss_dssp HHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSC
T ss_pred HHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccCh
Confidence 9999988 99999999983 7889999999999999 9999999999996 999999999
Q ss_pred ----------------------------------------------------------CChHHHHHHHhccccCCCCC--
Q psy16310 623 ----------------------------------------------------------RTSEIYIHRSGRTARANNEG-- 642 (1493)
Q Consensus 623 ----------------------------------------------------------~s~~~yiQR~GRagR~g~~G-- 642 (1493)
.++.+|+||+|||||+|..|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~ 445 (1054)
T 1gku_B 366 PQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLT 445 (1054)
T ss_dssp HHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEEC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCc
Confidence 79999999999999988775
Q ss_pred eEEEEecCCcchhhhhhh
Q psy16310 643 LTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 643 ~~i~l~~~~e~~~~~~l~ 660 (1493)
.+++++..+|...+..+.
T Consensus 446 ~g~~~~~~~d~~~~~~l~ 463 (1054)
T 1gku_B 446 KGASFLLEDDSELLSAFI 463 (1054)
T ss_dssp CEEEEEECSCHHHHHHHH
T ss_pred eEEEEEEecCHHHHHHHH
Confidence 478888777776655553
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-38 Score=418.12 Aligned_cols=355 Identities=21% Similarity=0.203 Sum_probs=207.5
Q ss_pred HCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 785 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 785 ~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
-.|+..|+|+|.++|+.+ ..|+|+++++|||||||++|++|+++.+...
T Consensus 243 l~~~~~~r~~Q~~ai~~i-l~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~------------------------------ 291 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPA-INGKNALICAPTGSGKTFVSILICEHHFQNM------------------------------ 291 (936)
T ss_dssp -----CCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHTTTTTC------------------------------
T ss_pred ccCCCCCCHHHHHHHHHH-HcCCCEEEEeCCCchHHHHHHHHHHHHHHhc------------------------------
Confidence 457899999999999855 4678999999999999999999998766331
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhC
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~ 944 (1493)
....+.++|||+||++|+.|+++.++.++...++++..++|+.....+...+..+++|+|+||++|.+++..+
T Consensus 292 -------~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~ 364 (936)
T 4a2w_A 292 -------PAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG 364 (936)
T ss_dssp -------CSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSS
T ss_pred -------cccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcC
Confidence 1122567999999999999999999999888899999999998776655555556899999999999999865
Q ss_pred cCccccccceeEEEecccchhccCCChhHHHHHHHHhc---ccCCCCCceEEEEecccccch----H---hHH---hhhc
Q psy16310 945 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVT---MTETSQPRQTFVFSATLTHSL----K---NSL---NLKK 1011 (1493)
Q Consensus 945 ~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~---~~~~~~~~q~ll~SATl~~~~----~---~~~---~~~~ 1011 (1493)
.. ..+.++++|||||||++...+. +..++..+. ........+++++|||+.... . ..+ ....
T Consensus 365 ~~--~~l~~~~liViDEaH~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L 439 (936)
T 4a2w_A 365 TL--TSLSIFTLMIFDECHNTTGNHP---YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL 439 (936)
T ss_dssp SC--CCGGGCSEEEEETGGGCSTTCH---HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHH
T ss_pred cc--ccccCCCEEEEECccccCCCcc---HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhc
Confidence 43 2356789999999999887653 333332221 112245689999999996311 1 100 0000
Q ss_pred cCcCcccccCCCchhHHHHhHhccCCCcEEeccccc------------------------------------cc------
Q psy16310 1012 GQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKI------------------------------------GI------ 1049 (1493)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------------------------------~~------ 1049 (1493)
... .+.........+...+.............. ..
T Consensus 440 ~~~---~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~ 516 (936)
T 4a2w_A 440 DIQ---AISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHW 516 (936)
T ss_dssp TCS---EEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHH
T ss_pred CCc---eeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHH
Confidence 000 000000011111111110000000000000 00
Q ss_pred -------------c--------------------------------------ccceee----------------------
Q psy16310 1050 -------------T--------------------------------------KTLTES---------------------- 1056 (1493)
Q Consensus 1050 -------------~--------------------------------------~~~~~~---------------------- 1056 (1493)
. ..+...
T Consensus 517 l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~ 596 (936)
T 4a2w_A 517 IVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQE 596 (936)
T ss_dssp HHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 0 000000
Q ss_pred ---------EEEecccchhhHHHHHHHhC-----CCcEEEEecchhhHHHHHHHHHhc------------CCCccccccC
Q psy16310 1057 ---------KILCKHDEKDSYLYYFILQH-----PGRTLVFCNSISSVKRLTQLLTML------------KCSPLPLHAS 1110 (1493)
Q Consensus 1057 ---------~~~~~~~~k~~~l~~~l~~~-----~~~~IVF~~s~~~~~~l~~~L~~~------------~~~~~~lhg~ 1110 (1493)
........|...+..++... +.++||||+++..++.|+..|... |.....+||+
T Consensus 597 ~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~ 676 (936)
T 4a2w_A 597 KEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTG 676 (936)
T ss_dssp HHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-----------
T ss_pred HHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCC
Confidence 00000234555566666542 579999999999999999999976 5566677999
Q ss_pred CCHHHHHHHHHHHhc-CCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHH
Q psy16310 1111 MNQRQRLKNLDRFRD-QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187 (1493)
Q Consensus 1111 m~~~~R~~~~~~F~~-g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~ 1187 (1493)
|++.+|..++++|++ |+++|||||+++++|||+|+|++||+||+|.|+..|+||+|| ||. +.|.+++|++..+..
T Consensus 677 m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 677 MTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp -----------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 999999999999999 999999999999999999999999999999999999999999 998 789999999876654
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=404.58 Aligned_cols=321 Identities=17% Similarity=0.199 Sum_probs=234.8
Q ss_pred HHHHHHHHHCCCCCCcHHHHhhHHHhhcc---C--CcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHH
Q psy16310 777 ETIIRALYQKGFKTPTKIQSMVMPSALLA---R--KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 851 (1493)
Q Consensus 777 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~---~--~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 851 (1493)
+.+.+.+..++| .||++|.++|+.++.+ + ++++++||||||||++|++|++..+..
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~------------------ 416 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------------------ 416 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc------------------
Confidence 344455678999 9999999999966542 1 599999999999999999999987632
Q ss_pred HHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHH---HHhcC-CC
Q psy16310 852 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL---RILNK-CP 927 (1493)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~---~~l~~-~~ 927 (1493)
+.+++|++||++||.|+++.+..++...++++..++|+....... ..+.. .+
T Consensus 417 ------------------------g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~ 472 (780)
T 1gm5_A 417 ------------------------GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQI 472 (780)
T ss_dssp ------------------------TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCC
T ss_pred ------------------------CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 246999999999999999999999988899999999999876543 33333 58
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
+|+|+||+.+.+. ..+.++++||+||||++.... . ..+ .......++++||||+.+......
T Consensus 473 ~IvVgT~~ll~~~--------~~~~~l~lVVIDEaHr~g~~q-----r---~~l--~~~~~~~~vL~mSATp~p~tl~~~ 534 (780)
T 1gm5_A 473 DVVIGTHALIQED--------VHFKNLGLVIIDEQHRFGVKQ-----R---EAL--MNKGKMVDTLVMSATPIPRSMALA 534 (780)
T ss_dssp CEEEECTTHHHHC--------CCCSCCCEEEEESCCCC-------------CCC--CSSSSCCCEEEEESSCCCHHHHHH
T ss_pred CEEEECHHHHhhh--------hhccCCceEEecccchhhHHH-----H---HHH--HHhCCCCCEEEEeCCCCHHHHHHH
Confidence 9999999987431 236789999999999963211 1 111 122346899999999865433221
Q ss_pred hhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHH---hCCCcEEEEe
Q psy16310 1008 NLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL---QHPGRTLVFC 1084 (1493)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~---~~~~~~IVF~ 1084 (1493)
. .+. .....+.. .......+.. ......+...++..+. ..+++++|||
T Consensus 535 ~--~g~----------------------~~~s~i~~--~p~~r~~i~~---~~~~~~~~~~l~~~i~~~l~~g~qvlVf~ 585 (780)
T 1gm5_A 535 F--YGD----------------------LDVTVIDE--MPPGRKEVQT---MLVPMDRVNEVYEFVRQEVMRGGQAFIVY 585 (780)
T ss_dssp H--TCC----------------------SSCEEECC--CCSSCCCCEE---CCCCSSTHHHHHHHHHHHTTTSCCBCCBC
T ss_pred H--hCC----------------------cceeeeec--cCCCCcceEE---EEeccchHHHHHHHHHHHHhcCCcEEEEe
Confidence 1 000 00001100 0000011111 1111223333444443 3467899999
Q ss_pred cch--------hhHHHHHHHHHh---cCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEec
Q psy16310 1085 NSI--------SSVKRLTQLLTM---LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153 (1493)
Q Consensus 1085 ~s~--------~~~~~l~~~L~~---~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d 1153 (1493)
+++ ..+..++..|.. .++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+++
T Consensus 586 ~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d 665 (780)
T 1gm5_A 586 PLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIEN 665 (780)
T ss_dssp CCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCS
T ss_pred cchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeC
Confidence 976 457888888887 478899999999999999999999999999999999999999999999999999
Q ss_pred CCC-ChhHHHHHHhccCCCCCCCeEEEEecCCCHH
Q psy16310 1154 VPR-TSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187 (1493)
Q Consensus 1154 ~p~-s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~ 1187 (1493)
+|. +...|.||+||+||.|+.|.|++++.+.+..
T Consensus 666 ~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 666 PERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp CSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred CCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 996 6888999999999999999999998854433
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=409.13 Aligned_cols=352 Identities=17% Similarity=0.186 Sum_probs=239.2
Q ss_pred HHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhh
Q psy16310 167 YQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 246 (1493)
Q Consensus 167 ~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1493)
...+|. |+++|.++++ ++..+++++++||||||||++|.++++..+.
T Consensus 81 ~~~~f~-L~~~Q~eai~-~l~~g~~vLV~apTGSGKTlva~lai~~~l~------------------------------- 127 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAIS-CIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------------------------------- 127 (1010)
T ss_dssp CCCSSC-CCHHHHHHHH-HHHHTCEEEEECCTTSCHHHHHHHHHHHHHH-------------------------------
T ss_pred HhCCCC-CCHHHHHHHH-HHHcCCCEEEECCCCCChHHHHHHHHHHHhc-------------------------------
Confidence 345775 9999999998 5668899999999999999999999887652
Q ss_pred hcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHc
Q psy16310 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 326 (1493)
Q Consensus 247 ~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~ 326 (1493)
.+.++||++||++|+.|+++.|..++. .++.++|+.... ..++|+|+||++|.+++.+
T Consensus 128 -----------~g~rvL~l~PtkaLa~Q~~~~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~ 185 (1010)
T 2xgj_A 128 -----------NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYR 185 (1010)
T ss_dssp -----------TTCEEEEEESSHHHHHHHHHHHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHH
T ss_pred -----------cCCeEEEECChHHHHHHHHHHHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHc
Confidence 235799999999999999999998764 678889987543 3579999999999998876
Q ss_pred CCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEE
Q psy16310 327 GHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVF 406 (1493)
Q Consensus 327 ~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~ 406 (1493)
+.. .+.++++|||||||++.+++++..++.++..+ +...|+++|
T Consensus 186 ~~~---~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l---------------------------------~~~~~il~L 229 (1010)
T 2xgj_A 186 GSE---VMREVAWVIFDEVHYMRDKERGVVWEETIILL---------------------------------PDKVRYVFL 229 (1010)
T ss_dssp TCT---TGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS---------------------------------CTTCEEEEE
T ss_pred Ccc---hhhcCCEEEEechhhhcccchhHHHHHHHHhc---------------------------------CCCCeEEEE
Confidence 543 35589999999999999999988888888765 345799999
Q ss_pred eeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhcc--CCcccchhhhhccccccchhhhhhccCCcchhhHHHH
Q psy16310 407 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK--SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI 484 (1493)
Q Consensus 407 SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1493)
|||+++... +..|+... .+..+. ..... +..+. .++.
T Consensus 230 SATi~n~~e------------------------~a~~l~~~~~~~~~vi-~~~~r-p~pl~---------------~~~~ 268 (1010)
T 2xgj_A 230 SATIPNAME------------------------FAEWICKIHSQPCHIV-YTNFR-PTPLQ---------------HYLF 268 (1010)
T ss_dssp ECCCTTHHH------------------------HHHHHHHHHTSCEEEE-EECCC-SSCEE---------------EEEE
T ss_pred cCCCCCHHH------------------------HHHHHHhhcCCCeEEE-ecCCC-cccce---------------EEEE
Confidence 999986432 11111100 000000 00000 00000 0000
Q ss_pred hcC--CCcchhh--------HHHhhhhccCCcccccccccccccccccccccc---c--cCchhhHHHHHHhh-CCCcEE
Q psy16310 485 LQH--PGRTLCE--------EIQDLLNIKSPKIVDLTEKIGITKTLTESKILC---K--HDEKDSYLYYFILQ-HPGRTL 548 (1493)
Q Consensus 485 ~~~--~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~k~~~l~~~l~~-~~~~~I 548 (1493)
... ....... .+............+..... ............ . .......+...+.. ...++|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~I 347 (1010)
T 2xgj_A 269 PAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNST-DSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVI 347 (1010)
T ss_dssp ETTSSCCEEEECTTCCBCHHHHHHHHHTCC-------------------------------CHHHHHHHHHHHHTCCSEE
T ss_pred ecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccc-ccccccccccccccccccchHHHHHHHHHHHhcCCCCEE
Confidence 000 0000000 00000000000000000000 000000000000 0 01223334444443 345999
Q ss_pred EEecchhhHHHHHHHHHhcCC---------------------------------------CccccccCCCHHHHHHHHHH
Q psy16310 549 VFCNSISSVKRLTQLLTMLKC---------------------------------------SPLPLHASMNQRQRLKNLDR 589 (1493)
Q Consensus 549 IF~~s~~~a~~L~~~L~~~~~---------------------------------------~~~~lhg~~~~~~R~~vl~~ 589 (1493)
|||+++..|+.++..|...++ +++.+||+|++.+|..+++.
T Consensus 348 VF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~ 427 (1010)
T 2xgj_A 348 VFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEIL 427 (1010)
T ss_dssp EEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHH
Confidence 999999999999998876443 26779999999999999999
Q ss_pred HhcCCCeEEEEechhhccCCCCCCcEEEE----ecC----CCChHHHHHHHhccccCCC--CCeEEEEecCC
Q psy16310 590 FRDQNNSILLATDVAARGLDIPGIEHVIH----YHV----PRTSEIYIHRSGRTARANN--EGLTVVLIESD 651 (1493)
Q Consensus 590 Fr~g~~~VLVaTdv~~rGlDip~v~~VI~----yd~----P~s~~~yiQR~GRagR~g~--~G~~i~l~~~~ 651 (1493)
|++|.++|||||+++++|||+|++++||+ ||. |.++..|+||+|||||.|. .|.|++++++.
T Consensus 428 F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 428 FQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp HHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred HhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 99999999999999999999999999999 999 8999999999999999996 59999999865
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-37 Score=405.96 Aligned_cols=344 Identities=15% Similarity=0.146 Sum_probs=243.6
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
.+| .|+|+|.++|+. +..|+|++++||||||||++|++|+...+
T Consensus 36 ~~f-~l~~~Q~~aI~~-il~g~~vlv~apTGsGKTlv~~~~i~~~~---------------------------------- 79 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYH-LEQGDSVFVAAHTSAGKTVVAEYAIAMAH---------------------------------- 79 (997)
T ss_dssp CSS-CCCHHHHHHHHH-HHTTCEEEEECCTTSCSHHHHHHHHHHHH----------------------------------
T ss_pred CCC-CCCHHHHHHHHH-HHcCCCEEEEECCCCcHHHHHHHHHHHHH----------------------------------
Confidence 455 489999999984 55789999999999999999999987654
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCc
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~ 945 (1493)
..+.++||++||++|+.|+++.+..++. ++++..++|+... ...++|+|+||++|.+++..+.
T Consensus 80 --------~~g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~ 142 (997)
T 4a4z_A 80 --------RNMTKTIYTSPIKALSNQKFRDFKETFD--DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGA 142 (997)
T ss_dssp --------HTTCEEEEEESCGGGHHHHHHHHHTTC----CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTC
T ss_pred --------hcCCeEEEEeCCHHHHHHHHHHHHHHcC--CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCc
Confidence 1345799999999999999999988642 6788999998753 2357999999999999987654
Q ss_pred CccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch--HhHHhhhccCcC-cccccCC
Q psy16310 946 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL--KNSLNLKKGQSK-SKKVSKG 1022 (1493)
Q Consensus 946 ~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~--~~~~~~~~~~~~-~~~~~~~ 1022 (1493)
. .+.++++|||||||++.+++|...+..++..+ +...|++++|||+++.. ..++........ .......
T Consensus 143 ~---~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l-----~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r 214 (997)
T 4a4z_A 143 D---LIRDVEFVIFDEVHYVNDQDRGVVWEEVIIML-----PQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKR 214 (997)
T ss_dssp S---GGGGEEEEEECCTTCCCTTCTTCCHHHHHHHS-----CTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSC
T ss_pred h---hhcCCCEEEEECcccccccchHHHHHHHHHhc-----ccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCC
Confidence 3 35689999999999999999999999998887 46789999999998653 222211110000 0000000
Q ss_pred CchhHHHHhHhccCCCcEEeccccc-------------------------------------------------------
Q psy16310 1023 DPSIKRLQDLLNIKSPKIVDLTEKI------------------------------------------------------- 1047 (1493)
Q Consensus 1023 ~~~~~~l~~~~~~~~~~~~~~~~~~------------------------------------------------------- 1047 (1493)
...+. ..+.. ......+....
T Consensus 215 ~~pl~---~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~ 290 (997)
T 4a4z_A 215 PVPLE---INIWA-KKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNS 290 (997)
T ss_dssp SSCEE---EEEEE-TTEEEEEECTTCCBCHHHHHHHHHHHC---------------------------------------
T ss_pred Cccce---EEEec-CCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 00000 00000 00000000000
Q ss_pred ---------------cccccceeeEEEecccchhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCC---------
Q psy16310 1048 ---------------GITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKC--------- 1102 (1493)
Q Consensus 1048 ---------------~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~--------- 1102 (1493)
............+....+...++.++... .+++||||+|+..|+.++..|...++
T Consensus 291 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i 370 (997)
T 4a4z_A 291 TRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQI 370 (997)
T ss_dssp --------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 00000001112223344455666666655 47999999999999999999977655
Q ss_pred ------------------------------CccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEe
Q psy16310 1103 ------------------------------SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHY 1152 (1493)
Q Consensus 1103 ------------------------------~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~ 1152 (1493)
++..|||+|++.+|..+++.|+.|.++|||||+++++|||+|+ ..||++
T Consensus 371 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~ 449 (997)
T 4a4z_A 371 HMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFS 449 (997)
T ss_dssp HHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEES
T ss_pred HHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEe
Confidence 5688999999999999999999999999999999999999999 555554
Q ss_pred cCCC---------ChhHHHHHHhccCCCC--CCCeEEEEec--CCCHHHHHHHHHh
Q psy16310 1153 HVPR---------TSEIYIHRSGRTARAN--NEGLTLVLIE--SDEIPLYIKMFNS 1195 (1493)
Q Consensus 1153 d~p~---------s~~~yiqr~GR~gR~g--~~G~~i~l~~--~~e~~~~~~~~~~ 1195 (1493)
+.|. +..+|+||+|||||.| ..|.+++++. +.+...+..+...
T Consensus 450 ~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~~ 505 (997)
T 4a4z_A 450 SIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMG 505 (997)
T ss_dssp CSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHHS
T ss_pred ccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHhcC
Confidence 4444 9999999999999998 5678888873 3456666666443
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=413.60 Aligned_cols=387 Identities=21% Similarity=0.198 Sum_probs=213.8
Q ss_pred HCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhh
Q psy16310 168 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 247 (1493)
Q Consensus 168 ~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1493)
-.|+..|+|+|.++++. +..|+|+|+++|||||||++|++|+++.+...
T Consensus 243 l~~~~~~r~~Q~~ai~~-il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~------------------------------ 291 (936)
T 4a2w_A 243 VYETKKARSYQIELAQP-AINGKNALICAPTGSGKTFVSILICEHHFQNM------------------------------ 291 (936)
T ss_dssp -----CCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHTTTTTC------------------------------
T ss_pred ccCCCCCCHHHHHHHHH-HHcCCCEEEEeCCCchHHHHHHHHHHHHHHhc------------------------------
Confidence 34788999999999984 55789999999999999999999998766321
Q ss_pred cchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcC
Q psy16310 248 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327 (1493)
Q Consensus 248 ~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~ 327 (1493)
....+.++|||+||++|+.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|.+++..+
T Consensus 292 -------~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~ 364 (936)
T 4a2w_A 292 -------PAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG 364 (936)
T ss_dssp -------CSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSS
T ss_pred -------cccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcC
Confidence 0112567999999999999999999999877789999999998777666666667899999999999999865
Q ss_pred CccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEe
Q psy16310 328 HFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407 (1493)
Q Consensus 328 ~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~S 407 (1493)
.. ..+.++++|||||||++...+. +..++..+.... .....+..|+++||
T Consensus 365 ~~--~~l~~~~liViDEaH~~~~~~~---~~~i~~~~~~~~-------------------------~~~~~~~~~~l~LS 414 (936)
T 4a2w_A 365 TL--TSLSIFTLMIFDECHNTTGNHP---YNVLMTRYLEQK-------------------------FNSASQLPQILGLT 414 (936)
T ss_dssp SC--CCGGGCSEEEEETGGGCSTTCH---HHHHHHHHHHHH-------------------------HTTCSCCCEEEEEE
T ss_pred cc--ccccCCCEEEEECccccCCCcc---HHHHHHHHHHHh-------------------------hccCCCcCeEEEec
Confidence 44 1355789999999999976543 333332221100 00113457899999
Q ss_pred eccchhhh-hhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhc
Q psy16310 408 ATLTHSLK-NSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 486 (1493)
Q Consensus 408 ATl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (1493)
||+...-. .+.. ....+..+......... .........+..++.
T Consensus 415 ATp~~~~~~~l~~----------------~~~~i~~L~~~L~~~~i------------------~~~~~~~~~l~~~~~- 459 (936)
T 4a2w_A 415 ASVGVGNAKNIEE----------------TIEHICSLCSYLDIQAI------------------STVRENIQELQRFMN- 459 (936)
T ss_dssp SCCCCTTCCSHHH----------------HHHHHHHHHHHHTCSEE------------------ECCCSSHHHHHHHSC-
T ss_pred CCcccccchhHHH----------------HHHHHHHHHHhcCCcee------------------ecccccHHHHHHhcc-
Confidence 99953210 0000 00000010000000000 000000011111111
Q ss_pred CCCcch-------h-----------hHHHhhhhc----------cCC---------cccccccc---cccc---------
Q psy16310 487 HPGRTL-------C-----------EEIQDLLNI----------KSP---------KIVDLTEK---IGIT--------- 517 (1493)
Q Consensus 487 ~~~~~~-------~-----------~~~~~~~~~----------~~~---------~~~~~~~~---~~~~--------- 517 (1493)
.+.... . ..+..+... ... .+..+... ....
T Consensus 460 ~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~ 539 (936)
T 4a2w_A 460 KPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRIC 539 (936)
T ss_dssp CCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHH
T ss_pred CCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 111100 0 000000000 000 00000000 0000
Q ss_pred -----------------------------ccccc-------------------------------cccccccCchhhHHH
Q psy16310 518 -----------------------------KTLTE-------------------------------SKILCKHDEKDSYLY 537 (1493)
Q Consensus 518 -----------------------------~~~~~-------------------------------~~~~~~~~~k~~~l~ 537 (1493)
..+.. .......+.|...|.
T Consensus 540 ~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~ 619 (936)
T 4a2w_A 540 RALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELV 619 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 00000 000011356777777
Q ss_pred HHHhhC-----CCcEEEEecchhhHHHHHHHHHhc------------CCCccccccCCCHHHHHHHHHHHhc-CCCeEEE
Q psy16310 538 YFILQH-----PGRTLVFCNSISSVKRLTQLLTML------------KCSPLPLHASMNQRQRLKNLDRFRD-QNNSILL 599 (1493)
Q Consensus 538 ~~l~~~-----~~~~IIF~~s~~~a~~L~~~L~~~------------~~~~~~lhg~~~~~~R~~vl~~Fr~-g~~~VLV 599 (1493)
.+|... +.++||||+++.+++.|+.+|... |.....+||+|++.+|..+++.|++ |.++|||
T Consensus 620 ~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLV 699 (936)
T 4a2w_A 620 CILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI 699 (936)
T ss_dssp HHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEE
T ss_pred HHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEE
Confidence 777653 579999999999999999999876 5566677999999999999999999 9999999
Q ss_pred EechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 600 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 600 aTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
||+++++|||+|+|++||+||+|.|+..|+||+|| ||. +.|.+++|++..+......+
T Consensus 700 aT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee~~~~ 757 (936)
T 4a2w_A 700 ATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVENEKC 757 (936)
T ss_dssp EECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHHHHHHH
T ss_pred EeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHHHHHH
Confidence 99999999999999999999999999999999999 998 68999999988776654443
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-38 Score=409.63 Aligned_cols=355 Identities=18% Similarity=0.153 Sum_probs=225.4
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..|+|+|.++++.++ .|+++++++|||+|||++|++|+++.+....
T Consensus 6 ~~l~~~Q~~~i~~il-~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~--------------------------------- 51 (699)
T 4gl2_A 6 LQLRPYQMEVAQPAL-EGKNIIICLPTGCGKTRVAVYIAKDHLDKKK--------------------------------- 51 (699)
T ss_dssp -CCCHHHHHHHHHHH-SSCCEEECCCTTSCHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred CCccHHHHHHHHHHH-hCCCEEEEcCCCCcHHHHHHHHHHHHHHhcc---------------------------------
Confidence 379999999999655 6789999999999999999999998775421
Q ss_pred hhhccCCCeEEEEEcccHHHHHHH-HHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCc--
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQV-QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH-- 945 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~-~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~-- 945 (1493)
....+.++|||+||++|+.|+ ++.++.++.. ++++..++|+.....+...+...++|+|+||++|.+.+....
T Consensus 52 ---~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~ 127 (699)
T 4gl2_A 52 ---KASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENG 127 (699)
T ss_dssp ---HHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC-----
T ss_pred ---ccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccc
Confidence 112335799999999999999 9999998755 589999999876655545555678999999999998873221
Q ss_pred -CccccccceeEEEecccchhccCCChhHHHH-HHHH-hcc-------cCCCCCceEEEEecccccc-------hHhHHh
Q psy16310 946 -FHLTELYKINYLVIDETDRMIESGHFPELKN-ILDR-VTM-------TETSQPRQTFVFSATLTHS-------LKNSLN 1008 (1493)
Q Consensus 946 -~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~-il~~-l~~-------~~~~~~~q~ll~SATl~~~-------~~~~~~ 1008 (1493)
.....+.++++|||||||++...+++..+.. ++.. +.. ....+..+++++|||++.. ....+.
T Consensus 128 ~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~ 207 (699)
T 4gl2_A 128 EDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHIL 207 (699)
T ss_dssp ---CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHH
T ss_pred cccceecccCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHH
Confidence 1122456899999999999876555444333 2221 100 0111456899999999963 111111
Q ss_pred hhccCcCcccccCCCchhHHHHhHhccCCCcEEecccccc---------------------ccccc--------------
Q psy16310 1009 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIG---------------------ITKTL-------------- 1053 (1493)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~~-------------- 1053 (1493)
..........+.........+................... .....
T Consensus 208 ~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~ 287 (699)
T 4gl2_A 208 KLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEK 287 (699)
T ss_dssp HHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHH
Confidence 0000000000000001111111111110000000000000 00000
Q ss_pred --------------------------------------------------------------------------------
Q psy16310 1054 -------------------------------------------------------------------------------- 1053 (1493)
Q Consensus 1054 -------------------------------------------------------------------------------- 1053 (1493)
T Consensus 288 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 367 (699)
T 4gl2_A 288 KAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNK 367 (699)
T ss_dssp HHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHH
Confidence
Q ss_pred --eeeE-EEecccchhhHHHHHHHhC------CCcEEEEecchhhHHHHHHHHHhc------CCCccccccC--------
Q psy16310 1054 --TESK-ILCKHDEKDSYLYYFILQH------PGRTLVFCNSISSVKRLTQLLTML------KCSPLPLHAS-------- 1110 (1493)
Q Consensus 1054 --~~~~-~~~~~~~k~~~l~~~l~~~------~~~~IVF~~s~~~~~~l~~~L~~~------~~~~~~lhg~-------- 1110 (1493)
.... .......|...+..++... ++++||||+++..++.++..|... |+.+..+||+
T Consensus 368 ~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~ 447 (699)
T 4gl2_A 368 MLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKP 447 (699)
T ss_dssp HHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCC
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCC
Confidence 0000 0000122333334444332 689999999999999999999987 8999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCC
Q psy16310 1111 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD 1184 (1493)
Q Consensus 1111 m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 1184 (1493)
|++.+|..++++|++|+++|||||+++++|||+|+|++||+||+|.|+..|+||+||+||.| .+++++.+.
T Consensus 448 ~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~~ 518 (699)
T 4gl2_A 448 MTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAHS 518 (699)
T ss_dssp CCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEES
T ss_pred CCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999976654 555555443
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-38 Score=396.22 Aligned_cols=315 Identities=16% Similarity=0.132 Sum_probs=230.9
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHH
Q psy16310 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 852 (1493)
Q Consensus 773 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 852 (1493)
+++++.++++|... +..|+|+|+.++| .+..++|++++||||||||++|++|+++.+..
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~-~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~------------------- 213 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDED-IFRKKRLTIMDLHPGAGKTKRILPSIVREALK------------------- 213 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGG-GGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------------------
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHH-HHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------------------
Confidence 55666666666543 5889999999987 67788999999999999999999999987743
Q ss_pred HHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEE
Q psy16310 853 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVA 932 (1493)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~ 932 (1493)
.+.++|||+|||+||.|+++.+.. ..+. ..++.. . .....+..+.++
T Consensus 214 ----------------------~~~~vLvl~PtreLa~Qi~~~l~~------~~v~-~~~~~l-~---~~~tp~~~i~~~ 260 (618)
T 2whx_A 214 ----------------------RRLRTLILAPTRVVAAEMEEALRG------LPIR-YQTPAV-K---SDHTGREIVDLM 260 (618)
T ss_dssp ----------------------TTCCEEEEESSHHHHHHHHHHTTT------SCEE-ECCTTS-S---CCCCSSSCEEEE
T ss_pred ----------------------CCCeEEEEcChHHHHHHHHHHhcC------Ccee-Eecccc-e---eccCCCceEEEE
Confidence 235799999999999999988762 3333 222110 0 001123357778
Q ss_pred CcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhcc
Q psy16310 933 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKG 1012 (1493)
Q Consensus 933 TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~ 1012 (1493)
|.+.+...+.... .+.++++|||||||++ +.+|...+..++..+. ...+|+++||||++..+..+..
T Consensus 261 t~~~l~~~l~~~~----~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~----~~~~q~il~SAT~~~~~~~~~~---- 327 (618)
T 2whx_A 261 CHATFTTRLLSST----RVPNYNLIVMDEAHFT-DPCSVAARGYISTRVE----MGEAAAIFMTATPPGSTDPFPQ---- 327 (618)
T ss_dssp EHHHHHHHHHHCS----SCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH----HTSCEEEEECSSCTTCCCSSCC----
T ss_pred ChHHHHHHHhccc----cccCCeEEEEECCCCC-CccHHHHHHHHHHHhc----ccCccEEEEECCCchhhhhhhc----
Confidence 8888876665432 3678999999999998 6677777777777663 1568999999999865432110
Q ss_pred CcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHHH
Q psy16310 1013 QSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKR 1092 (1493)
Q Consensus 1013 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~ 1092 (1493)
..+..+.+.... +. .+...+...+....+++||||+|+..|+.
T Consensus 328 -----------------------~~~~~~~v~~~~-------------~~-~~~~~ll~~l~~~~~~~LVF~~s~~~a~~ 370 (618)
T 2whx_A 328 -----------------------SNSPIEDIEREI-------------PE-RSWNTGFDWITDYQGKTVWFVPSIKAGND 370 (618)
T ss_dssp -----------------------CSSCEEEEECCC-------------CS-SCCSSSCHHHHHCCSCEEEECSSHHHHHH
T ss_pred -----------------------cCCceeeecccC-------------CH-HHHHHHHHHHHhCCCCEEEEECChhHHHH
Confidence 111112111110 00 11112233445568899999999999999
Q ss_pred HHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEE--------------------EEe
Q psy16310 1093 LTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV--------------------IHY 1152 (1493)
Q Consensus 1093 l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~V--------------------I~~ 1152 (1493)
++..|...++.+..+||+ +|.++++.|++|+.+||||||++++|||+| +++| |+|
T Consensus 371 l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~ 445 (618)
T 2whx_A 371 IANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAG 445 (618)
T ss_dssp HHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEE
T ss_pred HHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcc
Confidence 999999999999999985 788899999999999999999999999997 9988 888
Q ss_pred cCCCChhHHHHHHhccCCCCC-CCeEEEEec---CCCHHHHHHHHHhc
Q psy16310 1153 HVPRTSEIYIHRSGRTARANN-EGLTLVLIE---SDEIPLYIKMFNSL 1196 (1493)
Q Consensus 1153 d~p~s~~~yiqr~GR~gR~g~-~G~~i~l~~---~~e~~~~~~~~~~~ 1196 (1493)
++|.+.++|+||+|||||+|. .|.|++|++ +.+...+..+...+
T Consensus 446 d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 446 PIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred cccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 889999999999999999965 999999997 67766666655543
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=380.60 Aligned_cols=289 Identities=18% Similarity=0.171 Sum_probs=211.4
Q ss_pred CCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 787 g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
|+..|+|+|+ +||.++.++..++++||||||||++|++|++..+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------------------------------- 46 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------------------------------- 46 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH---------------------------------
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh---------------------------------
Confidence 7899999985 798666554445999999999999999999976632
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcC
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~ 946 (1493)
.+.++||++|||+||.|+++.+.. ..+....+.... ....+..|.++|++.+...+...
T Consensus 47 --------~~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-- 105 (451)
T 2jlq_A 47 --------RRLRTLILAPTRVVAAEMEEALRG------LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-- 105 (451)
T ss_dssp --------TTCCEEEEESSHHHHHHHHHHTTT------SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC--
T ss_pred --------cCCcEEEECCCHHHHHHHHHHhcC------ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc--
Confidence 235799999999999999998752 333222221110 11234579999999998887643
Q ss_pred ccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchh
Q psy16310 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSI 1026 (1493)
Q Consensus 947 ~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1026 (1493)
..+.++++|||||||++ +.++...+..+.... .....|+++||||++.......
T Consensus 106 --~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~----~~~~~~~i~~SAT~~~~~~~~~------------------- 159 (451)
T 2jlq_A 106 --TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRV----EMGEAAAIFMTATPPGSTDPFP------------------- 159 (451)
T ss_dssp --SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHH----HTTSCEEEEECSSCTTCCCSSC-------------------
T ss_pred --ccccCCCEEEEeCCccC-CcchHHHHHHHHHhh----cCCCceEEEEccCCCccchhhh-------------------
Confidence 24678999999999987 333322222222222 1356899999999986432211
Q ss_pred HHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccc
Q psy16310 1027 KRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLP 1106 (1493)
Q Consensus 1027 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~ 1106 (1493)
...+..+...... +. .....+..++....+++||||+|+..|+.++..|...|+.+..
T Consensus 160 --------~~~~~~~~~~~~~--p~------------~~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~ 217 (451)
T 2jlq_A 160 --------QSNSPIEDIEREI--PE------------RSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQ 217 (451)
T ss_dssp --------CCSSCEEEEECCC--CS------------SCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHTTTCCEEE
T ss_pred --------cCCCceEecCccC--Cc------------hhhHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEE
Confidence 0111111111000 00 0001123345566789999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEec--------------------CCCChhHHHHHHh
Q psy16310 1107 LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH--------------------VPRTSEIYIHRSG 1166 (1493)
Q Consensus 1107 lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d--------------------~p~s~~~yiqr~G 1166 (1493)
+||++. ..+++.|++|+.+|||||+++++|+|+|+ ++||||| .|.+..+|+||+|
T Consensus 218 lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~G 292 (451)
T 2jlq_A 218 LSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRG 292 (451)
T ss_dssp ECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHT
T ss_pred CCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhcc
Confidence 999864 57899999999999999999999999999 9999999 9999999999999
Q ss_pred ccCCCCC-CCeEEEEecC
Q psy16310 1167 RTARANN-EGLTLVLIES 1183 (1493)
Q Consensus 1167 R~gR~g~-~G~~i~l~~~ 1183 (1493)
||||.|+ .|.+++|+..
T Consensus 293 RaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 293 RIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp TSSCCTTCCCEEEEECSC
T ss_pred ccCCCCCCCccEEEEeCC
Confidence 9999998 8999888643
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=404.35 Aligned_cols=411 Identities=17% Similarity=0.138 Sum_probs=228.1
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.|+|+|.++++. +..|+|+|+++|||||||++|++|+++.+....
T Consensus 7 ~l~~~Q~~~i~~-il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---------------------------------- 51 (699)
T 4gl2_A 7 QLRPYQMEVAQP-ALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKK---------------------------------- 51 (699)
T ss_dssp CCCHHHHHHHHH-HHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHH----------------------------------
T ss_pred CccHHHHHHHHH-HHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcc----------------------------------
Confidence 699999999985 556889999999999999999999998875421
Q ss_pred hhcccCceEEEEEcccHHHHHHH-HHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCC---
Q psy16310 253 VKKTRNKLYALILAPTRELAIQV-QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH--- 328 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi-~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~--- 328 (1493)
....+.++|||+||++|+.|+ .+.+..++.. ++++..++|+......+..+...++|+|+||++|.+.+.+..
T Consensus 52 --~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~ 128 (699)
T 4gl2_A 52 --KASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGE 128 (699)
T ss_dssp --HHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC------
T ss_pred --ccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhcccccc
Confidence 112335799999999999999 9999998764 589999999987665555666778999999999998874321
Q ss_pred ccccccccccEEEEecCchhhhcCChhhHHH-HHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEe
Q psy16310 329 FHLTELYKINYLVIDETDRMIESGHFPELKN-ILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFS 407 (1493)
Q Consensus 329 ~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~-il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~S 407 (1493)
.....+.++++|||||||++...+++..+.. .+...... ...........+..+++++|
T Consensus 129 ~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~--------------------~~~~~~~~~~~~~~~il~lT 188 (699)
T 4gl2_A 129 DAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKN--------------------NRLKKENKPVIPLPQILGLT 188 (699)
T ss_dssp --CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHH--------------------HHHHC----CCCCCEEEEEC
T ss_pred ccceecccCcEEEEECccccCccchHHHHHHHHHHhhhcc--------------------cccccccccCCCCCEEEEec
Confidence 1122355899999999999866555544333 22111000 00000001112446899999
Q ss_pred eccchh--------hhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchh
Q psy16310 408 ATLTHS--------LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY 479 (1493)
Q Consensus 408 ATl~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1493)
||++.. ...+..+... .....+.........+...+............ .....+... + . .....
T Consensus 189 ATp~~~~~~~~~~~~~~i~~l~~~-l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~--~~~~~~~~~--l-~--~l~~~ 260 (699)
T 4gl2_A 189 ASPGVGGATKQAKAEEHILKLCAN-LDAFTIKTVKENLDQLKNQIQEPCKKFAIADA--TREDPFKEK--L-L--EIMTR 260 (699)
T ss_dssp SCCCCCSCCSHHHHHHHHHHHHHH-HTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-------CHHHH--H-H--HHHHH
T ss_pred ccccccccccHHHHHHHHHHHHhh-cCCCEEEeecCchHHHhhhcCCCceEEEEccc--ccCChHHHH--H-H--HHHHH
Confidence 999863 1111110000 00000000000001111111000000000000 000000000 0 0 00000
Q ss_pred hHHHHhcCCCcchhh-HHHhhhhc--------cCCc-----------------------------cccccccc-------
Q psy16310 480 LYYFILQHPGRTLCE-EIQDLLNI--------KSPK-----------------------------IVDLTEKI------- 514 (1493)
Q Consensus 480 ~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~-----------------------------~~~~~~~~------- 514 (1493)
+...+...+...... ........ .... +.......
T Consensus 261 i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 340 (699)
T 4gl2_A 261 IQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAV 340 (699)
T ss_dssp HHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 000000001111000 00000000 0000 00000000
Q ss_pred ---------cccc--------------cccccc-cccccCchhhHHHHHHhhC------CCcEEEEecchhhHHHHHHHH
Q psy16310 515 ---------GITK--------------TLTESK-ILCKHDEKDSYLYYFILQH------PGRTLVFCNSISSVKRLTQLL 564 (1493)
Q Consensus 515 ---------~~~~--------------~~~~~~-~~~~~~~k~~~l~~~l~~~------~~~~IIF~~s~~~a~~L~~~L 564 (1493)
.... .+.... .....+.|...|..++... ++++||||+++.+++.|+..|
T Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L 420 (699)
T 4gl2_A 341 IEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWI 420 (699)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHH
T ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHH
Confidence 0000 000000 0000233444444444432 689999999999999999999
Q ss_pred Hhc------CCCccccccC--------CCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHH
Q psy16310 565 TML------KCSPLPLHAS--------MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 630 (1493)
Q Consensus 565 ~~~------~~~~~~lhg~--------~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQ 630 (1493)
... |+.+..+||+ |++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.|+..|+|
T Consensus 421 ~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Q 500 (699)
T 4gl2_A 421 TENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQ 500 (699)
T ss_dssp HSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHH
T ss_pred HhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHH
Confidence 987 8999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccCCCCCeEEEEecCCc
Q psy16310 631 RSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 631 R~GRagR~g~~G~~i~l~~~~e 652 (1493)
|+|||||.| .+++++.+.+
T Consensus 501 r~GRArr~g---~~~~l~~~~~ 519 (699)
T 4gl2_A 501 ARGRARADE---STYVLVAHSG 519 (699)
T ss_dssp HHTTSCSSS---CEEEEEEESS
T ss_pred HcCCCCCCC---ceEEEEEeCC
Confidence 999966544 4444444433
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-36 Score=374.78 Aligned_cols=345 Identities=21% Similarity=0.268 Sum_probs=244.2
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.|+|+|.++++.++ .+ ++++++|||+|||++++++++..+.
T Consensus 9 ~l~~~Q~~~i~~~~-~~-~~ll~~~tG~GKT~~~~~~~~~~~~------------------------------------- 49 (494)
T 1wp9_A 9 QPRIYQEVIYAKCK-ET-NCLIVLPTGLGKTLIAMMIAEYRLT------------------------------------- 49 (494)
T ss_dssp CCCHHHHHHHHHGG-GS-CEEEECCTTSCHHHHHHHHHHHHHH-------------------------------------
T ss_pred CccHHHHHHHHHHh-hC-CEEEEcCCCCCHHHHHHHHHHHHHh-------------------------------------
Confidence 68999999998655 55 9999999999999999999987653
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccc
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~ 949 (1493)
..+.++|||+||++|+.|+.+.+.+++...+.++..++|+.......... ..++|+|+||++|...+..+..
T Consensus 50 ----~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~~--- 121 (494)
T 1wp9_A 50 ----KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRI--- 121 (494)
T ss_dssp ----HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTSC---
T ss_pred ----cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcCCc---
Confidence 12346999999999999999999998755556899999988876544333 3569999999999998876543
Q ss_pred cccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhc--cCcCcccc--------
Q psy16310 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK--GQSKSKKV-------- 1019 (1493)
Q Consensus 950 ~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~--~~~~~~~~-------- 1019 (1493)
.+.++++|||||||++.....+..+...+... ....+++++|||+............ ........
T Consensus 122 ~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~-----~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 196 (494)
T 1wp9_A 122 SLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQ-----AKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVR 196 (494)
T ss_dssp CTTSCSEEEEETGGGCSTTCHHHHHHHHHHHH-----CSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTG
T ss_pred chhhceEEEEECCcccCCCCcHHHHHHHHHhc-----CCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHH
Confidence 35578999999999998665544444444433 2567899999999854322211111 00000000
Q ss_pred ------------cCCCchhHHHHhHh--------------ccCCCcEEecccc-----------------cccc------
Q psy16310 1020 ------------SKGDPSIKRLQDLL--------------NIKSPKIVDLTEK-----------------IGIT------ 1050 (1493)
Q Consensus 1020 ------------~~~~~~~~~l~~~~--------------~~~~~~~~~~~~~-----------------~~~~------ 1050 (1493)
.........+...+ +...+....+... ....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (494)
T 1wp9_A 197 PYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYH 276 (494)
T ss_dssp GGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHH
T ss_pred HhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 00001111110000 0000000000000 0000
Q ss_pred ---------------c---cceee-----------------------------------EEEecccchhhHHHHHHHh--
Q psy16310 1051 ---------------K---TLTES-----------------------------------KILCKHDEKDSYLYYFILQ-- 1075 (1493)
Q Consensus 1051 ---------------~---~~~~~-----------------------------------~~~~~~~~k~~~l~~~l~~-- 1075 (1493)
. .+... ........|...+..++..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 356 (494)
T 1wp9_A 277 AMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQL 356 (494)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Confidence 0 00000 0000234456666666654
Q ss_pred ---CCCcEEEEecchhhHHHHHHHHHhcCCCcccccc--------CCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCC
Q psy16310 1076 ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHA--------SMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144 (1493)
Q Consensus 1076 ---~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg--------~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip 1144 (1493)
.++++||||+++..++.++..|...|+.+..+|| +|++.+|..++++|++|+.+|||||+++++|+|+|
T Consensus 357 ~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~ 436 (494)
T 1wp9_A 357 QRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVP 436 (494)
T ss_dssp HHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGST
T ss_pred ccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCch
Confidence 4789999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHH
Q psy16310 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187 (1493)
Q Consensus 1145 ~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~ 1187 (1493)
++++||+||+|.++..|+||+||+||.|. |.++.|+.++...
T Consensus 437 ~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 437 EVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp TCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred hCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 99999999999999999999999999998 9999999988754
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=373.92 Aligned_cols=399 Identities=20% Similarity=0.239 Sum_probs=247.0
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.|+|+|.++++.++ .+ ++|+++|||+|||++|+++++..+.
T Consensus 9 ~l~~~Q~~~i~~~~-~~-~~ll~~~tG~GKT~~~~~~~~~~~~------------------------------------- 49 (494)
T 1wp9_A 9 QPRIYQEVIYAKCK-ET-NCLIVLPTGLGKTLIAMMIAEYRLT------------------------------------- 49 (494)
T ss_dssp CCCHHHHHHHHHGG-GS-CEEEECCTTSCHHHHHHHHHHHHHH-------------------------------------
T ss_pred CccHHHHHHHHHHh-hC-CEEEEcCCCCCHHHHHHHHHHHHHh-------------------------------------
Confidence 59999999998554 55 9999999999999999999987663
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcccc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~ 332 (1493)
..+.++|||+||++|+.|+.+.+..+....+.++..++|+......... ...++|+|+||+.|.+.+..+...
T Consensus 50 ----~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-~~~~~ivv~T~~~l~~~~~~~~~~-- 122 (494)
T 1wp9_A 50 ----KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKA-WARAKVIVATPQTIENDLLAGRIS-- 122 (494)
T ss_dssp ----HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHH-HHHCSEEEECHHHHHHHHHTTSCC--
T ss_pred ----cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhh-ccCCCEEEecHHHHHHHHhcCCcc--
Confidence 1234699999999999999999999875556689999999877654333 335699999999999988765443
Q ss_pred ccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccch
Q psy16310 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 412 (1493)
Q Consensus 333 ~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~ 412 (1493)
+.++++|||||||++.+.+.+..+...+... ....+++++|||+..
T Consensus 123 -~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~l~lTaTp~~ 168 (494)
T 1wp9_A 123 -LEDVSLIVFDEAHRAVGNYAYVFIAREYKRQ---------------------------------AKNPLVIGLTASPGS 168 (494)
T ss_dssp -TTSCSEEEEETGGGCSTTCHHHHHHHHHHHH---------------------------------CSSCCEEEEESCSCS
T ss_pred -hhhceEEEEECCcccCCCCcHHHHHHHHHhc---------------------------------CCCCeEEEEecCCCC
Confidence 4578999999999997654444444443322 234689999999974
Q ss_pred hhhhhhhhhcccc--ccccccCCCchhhhHHhhhhccCCccc--chhhhhc-cccccc-----------hhhhhhccCC-
Q psy16310 413 SLKNSLNLKKGQS--KSKKVSKGDPSIKRLQDLLNIKSPKIV--DLTEKIG-ITKTLT-----------ESKILCKHDE- 475 (1493)
Q Consensus 413 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~-----------~~~~~~~~~~- 475 (1493)
....+..+..... .........+. +...+........ ....... +...+. ..........
T Consensus 169 ~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (494)
T 1wp9_A 169 TPEKIMEVINNLGIEHIEYRSENSPD---VRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPD 245 (494)
T ss_dssp SHHHHHHHHHHTTCCEEEECCTTSTT---TGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTT
T ss_pred CcHHHHHHHHhcChheeeccCCCcHH---HHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 4322221111000 00000000000 0000000000000 0000000 000000 0000000000
Q ss_pred -cc-------hhhHHHHhcCCCc---------------------------chhhHHHhhhhccCCccccccccccccccc
Q psy16310 476 -KD-------SYLYYFILQHPGR---------------------------TLCEEIQDLLNIKSPKIVDLTEKIGITKTL 520 (1493)
Q Consensus 476 -~~-------~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (1493)
.. ..+...+...... .....+..+....................+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (494)
T 1wp9_A 246 IPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRM 325 (494)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHH
T ss_pred cchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHH
Confidence 00 0000000000000 000000000000000000000000000000
Q ss_pred ccc-------ccccccCchhhHHHHHHhh-----CCCcEEEEecchhhHHHHHHHHHhcCCCcccccc--------CCCH
Q psy16310 521 TES-------KILCKHDEKDSYLYYFILQ-----HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHA--------SMNQ 580 (1493)
Q Consensus 521 ~~~-------~~~~~~~~k~~~l~~~l~~-----~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg--------~~~~ 580 (1493)
... ......+.|...+..++.. .+.++||||+++..+..++..|...++.+..+|| +|+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~ 405 (494)
T 1wp9_A 326 KKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQ 405 (494)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------C
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCH
Confidence 000 0111455677777777765 4689999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchh
Q psy16310 581 RQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 581 ~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
.+|..+++.|++|..+|||||+++++|||+|+|++||+||+|.|+..|+||+||+||.|. |.++.|+++++...
T Consensus 406 ~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 406 REQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDE 479 (494)
T ss_dssp CHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHH
T ss_pred HHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999997 99999999876543
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-37 Score=375.35 Aligned_cols=290 Identities=18% Similarity=0.176 Sum_probs=207.8
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
|+..|+|+|+ +||.++.++.+++++||||||||++|++|++.++..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------------------------------- 46 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------------------------------- 46 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH---------------------------------
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh---------------------------------
Confidence 7889999985 798666444444999999999999999999977642
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCc
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~ 329 (1493)
.+.++||++|||+||.|+++.+.. +.+....+.... ....+..|.++|++.|...+...
T Consensus 47 --------~~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-- 105 (451)
T 2jlq_A 47 --------RRLRTLILAPTRVVAAEMEEALRG------LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-- 105 (451)
T ss_dssp --------TTCCEEEEESSHHHHHHHHHHTTT------SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC--
T ss_pred --------cCCcEEEECCCHHHHHHHHHHhcC------ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc--
Confidence 235799999999999999998742 233222221111 12334579999999998887644
Q ss_pred cccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeec
Q psy16310 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 409 (1493)
Q Consensus 330 ~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SAT 409 (1493)
..+.++++|||||||++ +..+...+..+.... ..+.+|+++||||
T Consensus 106 --~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~--------------------------------~~~~~~~i~~SAT 150 (451)
T 2jlq_A 106 --TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRV--------------------------------EMGEAAAIFMTAT 150 (451)
T ss_dssp --SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHH--------------------------------HTTSCEEEEECSS
T ss_pred --ccccCCCEEEEeCCccC-CcchHHHHHHHHHhh--------------------------------cCCCceEEEEccC
Confidence 23668999999999977 332222222222111 0335799999999
Q ss_pred cchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCC
Q psy16310 410 LTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 489 (1493)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (1493)
++..+..+.. ..+....... ..+.
T Consensus 151 ~~~~~~~~~~---------------------------~~~~~~~~~~-----------------------------~~p~ 174 (451)
T 2jlq_A 151 PPGSTDPFPQ---------------------------SNSPIEDIER-----------------------------EIPE 174 (451)
T ss_dssp CTTCCCSSCC---------------------------CSSCEEEEEC-----------------------------CCCS
T ss_pred CCccchhhhc---------------------------CCCceEecCc-----------------------------cCCc
Confidence 9864432110 0000000000 0000
Q ss_pred cchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCC
Q psy16310 490 RTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKC 569 (1493)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~ 569 (1493)
. ....+..++....+++||||+++..++.++..|...++
T Consensus 175 ~-----------------------------------------~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~g~ 213 (451)
T 2jlq_A 175 R-----------------------------------------SWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGK 213 (451)
T ss_dssp S-----------------------------------------CCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHTTTC
T ss_pred h-----------------------------------------hhHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHcCC
Confidence 0 00001122344567999999999999999999999999
Q ss_pred CccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEec--------------------CCCChHHHH
Q psy16310 570 SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH--------------------VPRTSEIYI 629 (1493)
Q Consensus 570 ~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd--------------------~P~s~~~yi 629 (1493)
.+..+||.+. ..+++.|++|+.+|||||+++++|||+|+ ++||+|| +|.+..+|+
T Consensus 214 ~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~ 288 (451)
T 2jlq_A 214 RVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAA 288 (451)
T ss_dssp CEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHH
T ss_pred eEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHH
Confidence 9999999764 57899999999999999999999999999 9999999 999999999
Q ss_pred HHHhccccCCC-CCeEEEEecCC
Q psy16310 630 HRSGRTARANN-EGLTVVLIESD 651 (1493)
Q Consensus 630 QR~GRagR~g~-~G~~i~l~~~~ 651 (1493)
||+|||||.|. .|.|++++..+
T Consensus 289 Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 289 QRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp HHHTTSSCCTTCCCEEEEECSCC
T ss_pred HhccccCCCCCCCccEEEEeCCc
Confidence 99999999998 89998887543
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=387.78 Aligned_cols=326 Identities=17% Similarity=0.216 Sum_probs=230.8
Q ss_pred HHHHHHHHHCCCCCChHHHHhhhhhhhcc-----CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHH
Q psy16310 160 ETIIRALYQKGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 234 (1493)
Q Consensus 160 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-----~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 234 (1493)
+.+.+.+..++| .||++|.++++.++.+ .+|++++||||||||++|++|++..+..
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~------------------ 416 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------------------ 416 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc------------------
Confidence 445556678899 8999999999855532 1599999999999999999999977632
Q ss_pred HHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHH---HHhcC-CC
Q psy16310 235 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL---RILNK-CP 310 (1493)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~---~~l~~-~~ 310 (1493)
+.+++||+||++||.|+++.+..+....++++..++|+....... ..+.. .+
T Consensus 417 ------------------------g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~ 472 (780)
T 1gm5_A 417 ------------------------GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQI 472 (780)
T ss_dssp ------------------------TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCC
T ss_pred ------------------------CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 356999999999999999999999888899999999998876543 33333 58
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+|+|+||+.|.+ .. .+.++++|||||||++..... ..+
T Consensus 473 ~IvVgT~~ll~~-----~~---~~~~l~lVVIDEaHr~g~~qr--------~~l-------------------------- 510 (780)
T 1gm5_A 473 DVVIGTHALIQE-----DV---HFKNLGLVIIDEQHRFGVKQR--------EAL-------------------------- 510 (780)
T ss_dssp CEEEECTTHHHH-----CC---CCSCCCEEEEESCCCC-------------CCC--------------------------
T ss_pred CEEEECHHHHhh-----hh---hccCCceEEecccchhhHHHH--------HHH--------------------------
Confidence 999999998744 12 356889999999998621110 000
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKIL 470 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1493)
.......++++||||+.+......... +. ....... .+.
T Consensus 511 ----~~~~~~~~vL~mSATp~p~tl~~~~~g------------~~------------~~s~i~~-----~p~-------- 549 (780)
T 1gm5_A 511 ----MNKGKMVDTLVMSATPIPRSMALAFYG------------DL------------DVTVIDE-----MPP-------- 549 (780)
T ss_dssp ----CSSSSCCCEEEEESSCCCHHHHHHHTC------------CS------------SCEEECC-----CCS--------
T ss_pred ----HHhCCCCCEEEEeCCCCHHHHHHHHhC------------Cc------------ceeeeec-----cCC--------
Confidence 001235789999999865432211000 00 0000000 000
Q ss_pred hccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHh---hCCCcE
Q psy16310 471 CKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFIL---QHPGRT 547 (1493)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~---~~~~~~ 547 (1493)
.. ..+. .... ...+...+...+. ..++++
T Consensus 550 ---~r------------------------------------------~~i~--~~~~-~~~~~~~l~~~i~~~l~~g~qv 581 (780)
T 1gm5_A 550 ---GR------------------------------------------KEVQ--TMLV-PMDRVNEVYEFVRQEVMRGGQA 581 (780)
T ss_dssp ---SC------------------------------------------CCCE--ECCC-CSSTHHHHHHHHHHHTTTSCCB
T ss_pred ---CC------------------------------------------cceE--EEEe-ccchHHHHHHHHHHHHhcCCcE
Confidence 00 0000 0000 0111112222222 235789
Q ss_pred EEEecch--------hhHHHHHHHHHh---cCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEE
Q psy16310 548 LVFCNSI--------SSVKRLTQLLTM---LKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV 616 (1493)
Q Consensus 548 IIF~~s~--------~~a~~L~~~L~~---~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~V 616 (1493)
+|||++. ..+..+++.|.. .++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|+|++|
T Consensus 582 lVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~V 661 (780)
T 1gm5_A 582 FIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVM 661 (780)
T ss_dssp CCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEE
T ss_pred EEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEE
Confidence 9999965 457788888877 37889999999999999999999999999999999999999999999999
Q ss_pred EEecCCC-ChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 617 IHYHVPR-TSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 617 I~yd~P~-s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
|+||+|. +...|+||+||+||.|..|.|++++++.+......+
T Consensus 662 Ii~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl 705 (780)
T 1gm5_A 662 VIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 705 (780)
T ss_dssp EBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHH
Confidence 9999996 788999999999999999999999985444433343
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-36 Score=394.94 Aligned_cols=359 Identities=15% Similarity=0.141 Sum_probs=237.0
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
.+|+ |+++|.++|+ .+..|+|++++||||||||++|++++...+.
T Consensus 36 ~~f~-l~~~Q~~aI~-~il~g~~vlv~apTGsGKTlv~~~~i~~~~~--------------------------------- 80 (997)
T 4a4z_A 36 WPFE-LDTFQKEAVY-HLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR--------------------------------- 80 (997)
T ss_dssp CSSC-CCHHHHHHHH-HHHTTCEEEEECCTTSCSHHHHHHHHHHHHH---------------------------------
T ss_pred CCCC-CCHHHHHHHH-HHHcCCCEEEEECCCCcHHHHHHHHHHHHHh---------------------------------
Confidence 4664 8999999998 5667899999999999999999999876541
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 328 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~ 328 (1493)
.+.++||++||++|+.|+++.+..+.. ++.+..++|+... ...++|+|+||++|.+++....
T Consensus 81 ---------~g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~ 142 (997)
T 4a4z_A 81 ---------NMTKTIYTSPIKALSNQKFRDFKETFD--DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGA 142 (997)
T ss_dssp ---------TTCEEEEEESCGGGHHHHHHHHHTTC----CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTC
T ss_pred ---------cCCeEEEEeCCHHHHHHHHHHHHHHcC--CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCc
Confidence 346799999999999999999988653 6889999998753 2347999999999999987654
Q ss_pred ccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEee
Q psy16310 329 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 408 (1493)
Q Consensus 329 ~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SA 408 (1493)
.. +.++++|||||||++.++++...++.++..+ +...|++++||
T Consensus 143 ~~---l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l---------------------------------~~~v~iIlLSA 186 (997)
T 4a4z_A 143 DL---IRDVEFVIFDEVHYVNDQDRGVVWEEVIIML---------------------------------PQHVKFILLSA 186 (997)
T ss_dssp SG---GGGEEEEEECCTTCCCTTCTTCCHHHHHHHS---------------------------------CTTCEEEEEEC
T ss_pred hh---hcCCCEEEEECcccccccchHHHHHHHHHhc---------------------------------ccCCCEEEEcC
Confidence 43 4589999999999999999999999888766 34579999999
Q ss_pred ccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccC-CcccchhhhhccccccchhhhhhccCCcchhhHHHHhcC
Q psy16310 409 TLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS-PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 487 (1493)
Q Consensus 409 Tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (1493)
|+++... + .+|+.... ..+..+..... +..+... +... . . ......
T Consensus 187 T~~n~~e-f-----------------------~~~l~~~~~~~~~vi~~~~r-~~pl~~~-v~~~--~-~----~~~~~~ 233 (997)
T 4a4z_A 187 TVPNTYE-F-----------------------ANWIGRTKQKNIYVISTPKR-PVPLEIN-IWAK--K-E----LIPVIN 233 (997)
T ss_dssp CCTTHHH-H-----------------------HHHHHHHHTCCEEEEECSSC-SSCEEEE-EEET--T-E----EEEEEC
T ss_pred CCCChHH-H-----------------------HHHHhcccCCceEEEecCCC-CccceEE-EecC--C-c----chhccc
Confidence 9986431 1 12221100 00000000000 0000000 0000 0 0 000011
Q ss_pred CCcchhh-HHHh---hhhccCCccc-cc------c---c--------cc----------------------c-ccccccc
Q psy16310 488 PGRTLCE-EIQD---LLNIKSPKIV-DL------T---E--------KI----------------------G-ITKTLTE 522 (1493)
Q Consensus 488 ~~~~~~~-~~~~---~~~~~~~~~~-~~------~---~--------~~----------------------~-~~~~~~~ 522 (1493)
....... .+.. .......... .. . . .. . .......
T Consensus 234 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 313 (997)
T 4a4z_A 234 QNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKF 313 (997)
T ss_dssp TTCCBCHHHHHHHHHHHC--------------------------------------------------------------
T ss_pred chhhhhHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111000 0000 0000000000 00 0 0 00 0 0000000
Q ss_pred cccccccCchhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHhcCC--------------------------------
Q psy16310 523 SKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKC-------------------------------- 569 (1493)
Q Consensus 523 ~~~~~~~~~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~~-------------------------------- 569 (1493)
....+....+...+...+... ..++||||+++..|+.++..|...++
T Consensus 314 ~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~ 393 (997)
T 4a4z_A 314 FTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILK 393 (997)
T ss_dssp ---CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHH
T ss_pred ccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHH
Confidence 111222334455566666655 47999999999999999999976554
Q ss_pred -------CccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEE--------EecCCCChHHHHHHHhc
Q psy16310 570 -------SPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI--------HYHVPRTSEIYIHRSGR 634 (1493)
Q Consensus 570 -------~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI--------~yd~P~s~~~yiQR~GR 634 (1493)
++..+||+|++.+|..+++.|++|.++|||||+++++|||+|++.+|+ +++.|.++.+|+||+||
T Consensus 394 l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GR 473 (997)
T 4a4z_A 394 TRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGR 473 (997)
T ss_dssp HHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGG
T ss_pred HHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcc
Confidence 578899999999999999999999999999999999999999955555 23344599999999999
Q ss_pred cccCC--CCCeEEEEec
Q psy16310 635 TARAN--NEGLTVVLIE 649 (1493)
Q Consensus 635 agR~g--~~G~~i~l~~ 649 (1493)
|||.| ..|.|++++.
T Consensus 474 AGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 474 AGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp GCCTTTCSSEEEEEECC
T ss_pred cccCCCCcceEEEEecC
Confidence 99998 5688888884
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=387.45 Aligned_cols=311 Identities=16% Similarity=0.136 Sum_probs=224.1
Q ss_pred cCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHH
Q psy16310 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 235 (1493)
Q Consensus 156 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 235 (1493)
+++++.+.+++... +..|+|+|+.++| ++..++|+|++||||||||++|++|+++.+..
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~-~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~------------------- 213 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDED-IFRKKRLTIMDLHPGAGKTKRILPSIVREALK------------------- 213 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGG-GGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------------------
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHH-HHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------------------
Confidence 45666666555443 5789999999887 67789999999999999999999999988743
Q ss_pred HHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEe
Q psy16310 236 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVA 315 (1493)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~ 315 (1493)
.+.++|||+|||+||.|+++.+.. +.+. +.+..-. ..-..+..+.++
T Consensus 214 ----------------------~~~~vLvl~PtreLa~Qi~~~l~~------~~v~-~~~~~l~----~~~tp~~~i~~~ 260 (618)
T 2whx_A 214 ----------------------RRLRTLILAPTRVVAAEMEEALRG------LPIR-YQTPAVK----SDHTGREIVDLM 260 (618)
T ss_dssp ----------------------TTCCEEEEESSHHHHHHHHHHTTT------SCEE-ECCTTSS----CCCCSSSCEEEE
T ss_pred ----------------------CCCeEEEEcChHHHHHHHHHHhcC------Ccee-Eecccce----eccCCCceEEEE
Confidence 235799999999999999988752 2232 2221100 011123457788
Q ss_pred CcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhcccc
Q psy16310 316 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395 (1493)
Q Consensus 316 TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1493)
|.+.|...+.... .+.++++|||||||++ +.++...+..++..+.
T Consensus 261 t~~~l~~~l~~~~----~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~------------------------------ 305 (618)
T 2whx_A 261 CHATFTTRLLSST----RVPNYNLIVMDEAHFT-DPCSVAARGYISTRVE------------------------------ 305 (618)
T ss_dssp EHHHHHHHHHHCS----SCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH------------------------------
T ss_pred ChHHHHHHHhccc----cccCCeEEEEECCCCC-CccHHHHHHHHHHHhc------------------------------
Confidence 8888877665432 3568999999999998 6677777777776552
Q ss_pred CCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCC
Q psy16310 396 ETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE 475 (1493)
Q Consensus 396 ~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1493)
...+|+++||||++..+..+.. ..+........
T Consensus 306 --~~~~q~il~SAT~~~~~~~~~~---------------------------~~~~~~~v~~~------------------ 338 (618)
T 2whx_A 306 --MGEAAAIFMTATPPGSTDPFPQ---------------------------SNSPIEDIERE------------------ 338 (618)
T ss_dssp --HTSCEEEEECSSCTTCCCSSCC---------------------------CSSCEEEEECC------------------
T ss_pred --ccCccEEEEECCCchhhhhhhc---------------------------cCCceeeeccc------------------
Confidence 1347999999999865432221 00000000000
Q ss_pred cchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchh
Q psy16310 476 KDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSIS 555 (1493)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~ 555 (1493)
.+. .+...+...+....+++||||+|+.
T Consensus 339 -----------~~~-----------------------------------------~~~~~ll~~l~~~~~~~LVF~~s~~ 366 (618)
T 2whx_A 339 -----------IPE-----------------------------------------RSWNTGFDWITDYQGKTVWFVPSIK 366 (618)
T ss_dssp -----------CCS-----------------------------------------SCCSSSCHHHHHCCSCEEEECSSHH
T ss_pred -----------CCH-----------------------------------------HHHHHHHHHHHhCCCCEEEEECChh
Confidence 000 0000111223345679999999999
Q ss_pred hHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEE-------------------
Q psy16310 556 SVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHV------------------- 616 (1493)
Q Consensus 556 ~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~V------------------- 616 (1493)
.|+.+++.|...++.+..+||. +|.++++.|++|+.+|||||+++++|||+| |++|
T Consensus 367 ~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~ 441 (618)
T 2whx_A 367 AGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERV 441 (618)
T ss_dssp HHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCce
Confidence 9999999999999999999985 688899999999999999999999999998 9988
Q ss_pred -EEecCCCChHHHHHHHhccccCCC-CCeEEEEec---CCcchhhhhh
Q psy16310 617 -IHYHVPRTSEIYIHRSGRTARANN-EGLTVVLIE---SDEIPLKTKF 659 (1493)
Q Consensus 617 -I~yd~P~s~~~yiQR~GRagR~g~-~G~~i~l~~---~~e~~~~~~l 659 (1493)
|+||+|.+..+|+||+|||||+|. +|.|++|++ +.|...+..+
T Consensus 442 ~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~l 489 (618)
T 2whx_A 442 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWT 489 (618)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHH
T ss_pred EEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHH
Confidence 888889999999999999999965 899999998 5665555444
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=373.73 Aligned_cols=281 Identities=19% Similarity=0.238 Sum_probs=208.2
Q ss_pred CcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhh
Q psy16310 791 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 870 (1493)
Q Consensus 791 pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (1493)
|...|++.|+.++.++++++++||||||||++|.+|+++
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~----------------------------------------- 255 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA----------------------------------------- 255 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-----------------------------------------
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-----------------------------------------
Confidence 444455666667888899999999999999999999874
Q ss_pred hccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCcccc
Q psy16310 871 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 950 (1493)
Q Consensus 871 ~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~ 950 (1493)
.+.++||++|||+||.|+++.+.+.. +..+...+|+.. +..+++|+|+|||+| +.... ..
T Consensus 256 ----~g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~---l~ 315 (666)
T 3o8b_A 256 ----QGYKVLVLNPSVAATLGFGAYMSKAH---GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGG---CS 315 (666)
T ss_dssp ----TTCCEEEEESCHHHHHHHHHHHHHHH---SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTS---CC
T ss_pred ----CCCeEEEEcchHHHHHHHHHHHHHHh---CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCC---cc
Confidence 12369999999999999999876643 355667777754 456789999999997 34333 23
Q ss_pred ccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHH
Q psy16310 951 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQ 1030 (1493)
Q Consensus 951 l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1030 (1493)
+.++++||||||| +++.+|...+..+++.+.. .....++++|||++..+..
T Consensus 316 l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~---~~~~llil~SAT~~~~i~~------------------------- 366 (666)
T 3o8b_A 316 GGAYDIIICDECH-STDSTTILGIGTVLDQAET---AGARLVVLATATPPGSVTV------------------------- 366 (666)
T ss_dssp TTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTT---TTCSEEEEEESSCTTCCCC-------------------------
T ss_pred cCcccEEEEccch-hcCccHHHHHHHHHHhhhh---cCCceEEEECCCCCccccc-------------------------
Confidence 5679999999996 5677787788888887742 1223377889999863210
Q ss_pred hHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccC
Q psy16310 1031 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110 (1493)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~ 1110 (1493)
..+....+.... ...+........ +....++++||||+|++.++.+++.|+..++.+..+||+
T Consensus 367 -----~~p~i~~v~~~~--~~~i~~~~~~~~----------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~ 429 (666)
T 3o8b_A 367 -----PHPNIEEVALSN--TGEIPFYGKAIP----------IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRG 429 (666)
T ss_dssp -----CCTTEEEEECBS--CSSEEETTEEEC----------GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred -----CCcceEEEeecc--cchhHHHHhhhh----------hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCC
Confidence 001111100000 000000000000 001246899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEE----------Eec-----------CCCChhHHHHHHhccC
Q psy16310 1111 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI----------HYH-----------VPRTSEIYIHRSGRTA 1169 (1493)
Q Consensus 1111 m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI----------~~d-----------~p~s~~~yiqr~GR~g 1169 (1493)
|++.+ |+++..+||||||+++||||+| |++|| ||| +|.+.++|+||+||||
T Consensus 430 l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtG 501 (666)
T 3o8b_A 430 LDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTG 501 (666)
T ss_dssp SCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBC
T ss_pred CCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCC
Confidence 99875 5567779999999999999997 99988 677 8999999999999999
Q ss_pred CCCCCCeEEEEecCCCHHH
Q psy16310 1170 RANNEGLTLVLIESDEIPL 1188 (1493)
Q Consensus 1170 R~g~~G~~i~l~~~~e~~~ 1188 (1493)
| |+.|. ++|+++.+...
T Consensus 502 R-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 502 R-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp S-SSCEE-EEESCCCCBCS
T ss_pred C-CCCCE-EEEEecchhhc
Confidence 9 99999 99998887544
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=393.28 Aligned_cols=304 Identities=19% Similarity=0.200 Sum_probs=208.3
Q ss_pred HHHHCCCC-----CCcHHHH-----hhHHHhh-----ccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 782 ALYQKGFK-----TPTKIQS-----MVMPSAL-----LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 782 ~l~~~g~~-----~pt~iQ~-----~~i~~~l-----~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
+|...||. +|||+|. ++||.++ ..++|++++||||||||++|++|+++.+..
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~------------- 268 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ------------- 268 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------------
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------------
Confidence 34455666 9999999 9998544 278999999999999999999999987642
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
.+.++|||+||++||.|+++.+..+. +. ...+... .....+
T Consensus 269 ----------------------------~~~~~lilaPTr~La~Q~~~~l~~~~----i~--~~~~~l~-----~v~tp~ 309 (673)
T 2wv9_A 269 ----------------------------KRLRTAVLAPTRVVAAEMAEALRGLP----VR--YLTPAVQ-----REHSGN 309 (673)
T ss_dssp ----------------------------TTCCEEEEESSHHHHHHHHHHTTTSC----CE--ECCC--------CCCCSC
T ss_pred ----------------------------CCCcEEEEccHHHHHHHHHHHHhcCC----ee--eeccccc-----ccCCHH
Confidence 23579999999999999999887542 22 1111000 000001
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
.-+-+.+.+.+...+... ..+.++++|||||||++ +..+...+..+...+. ....|+++||||++..+...
T Consensus 310 ~ll~~l~~~~l~~~l~~~----~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~----~~~~~vl~~SAT~~~~i~~~ 380 (673)
T 2wv9_A 310 EIVDVMCHATLTHRLMSP----LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVE----AGEAAAIFMTATPPGTSDPF 380 (673)
T ss_dssp CCEEEEEHHHHHHHHHSS----SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHH----TTSCEEEEECSSCTTCCCSS
T ss_pred HHHHHHHhhhhHHHHhcc----cccccceEEEEeCCccc-CccHHHHHHHHHHhcc----ccCCcEEEEcCCCChhhhhh
Confidence 123333444443333221 24678999999999997 2111122222333221 25689999999998654321
Q ss_pred HhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecc
Q psy16310 1007 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNS 1086 (1493)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s 1086 (1493)
.. ....+..+... ... .....++..+...++++||||++
T Consensus 381 ~~---------------------------~~~~i~~v~~~-------------~~~-~~~~~~l~~l~~~~~~~lVF~~s 419 (673)
T 2wv9_A 381 PD---------------------------TNSPVHDVSSE-------------IPD-RAWSSGFEWITDYAGKTVWFVAS 419 (673)
T ss_dssp CC---------------------------CSSCEEEEECC-------------CCS-SCCSSCCHHHHSCCSCEEEECSS
T ss_pred cc---------------------------cCCceEEEeee-------------cCH-HHHHHHHHHHHhCCCCEEEEECC
Confidence 10 00111111100 000 11111233445568899999999
Q ss_pred hhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEE---------------
Q psy16310 1087 ISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH--------------- 1151 (1493)
Q Consensus 1087 ~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~--------------- 1151 (1493)
+..++.++..|...++.+..+||+ +|..+++.|++|+++|||||+++++|||+| +++|||
T Consensus 420 ~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~ 494 (673)
T 2wv9_A 420 VKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEG 494 (673)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTC
T ss_pred HHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccc
Confidence 999999999999999999999994 789999999999999999999999999999 999998
Q ss_pred -----ecCCCChhHHHHHHhccCCC-CCCCeEEEEe---cCCCHHHHHHH
Q psy16310 1152 -----YHVPRTSEIYIHRSGRTARA-NNEGLTLVLI---ESDEIPLYIKM 1192 (1493)
Q Consensus 1152 -----~d~p~s~~~yiqr~GR~gR~-g~~G~~i~l~---~~~e~~~~~~~ 1192 (1493)
|++|.+.++|+||+||+||. |+.|.|++|+ ++.+...+..+
T Consensus 495 r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~i 544 (673)
T 2wv9_A 495 RVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWT 544 (673)
T ss_dssp EEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHH
T ss_pred cceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHH
Confidence 67999999999999999999 7899999996 45555444433
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=368.01 Aligned_cols=282 Identities=18% Similarity=0.181 Sum_probs=195.1
Q ss_pred hhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEE
Q psy16310 802 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 881 (1493)
Q Consensus 802 ~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 881 (1493)
++..|+|++++||||||||++|++|+++.+.. .+.+++|
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-----------------------------------------~~~~~li 42 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-----------------------------------------RRLRTLV 42 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------------------------------------TTCCEEE
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-----------------------------------------cCCeEEE
Confidence 45688999999999999999999999987642 2357999
Q ss_pred EcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCc-----CccccccceeE
Q psy16310 882 LAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH-----FHLTELYKINY 956 (1493)
Q Consensus 882 l~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~-----~~~~~l~~l~~ 956 (1493)
++||++||.|+++.+..+ .+....+.. -.|+||+++.+++..+. .....+.++++
T Consensus 43 l~Ptr~La~Q~~~~l~~~------~v~~~~~~~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~ 102 (440)
T 1yks_A 43 LAPTRVVLSEMKEAFHGL------DVKFHTQAF--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEV 102 (440)
T ss_dssp EESSHHHHHHHHHHTTTS------CEEEESSCC--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSE
T ss_pred EcchHHHHHHHHHHHhcC------CeEEecccc--------------eeccCCccceeeecccchhHhhhCcccccCccE
Confidence 999999999999988743 222221111 03777776654332211 11223678999
Q ss_pred EEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccC
Q psy16310 957 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIK 1036 (1493)
Q Consensus 957 lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1036 (1493)
||+||||++ +.++...+..+...+. ....|+++||||++..+..... .
T Consensus 103 vViDEah~~-~~~~~~~~~~~~~~~~----~~~~~~l~~SAT~~~~~~~~~~---------------------------~ 150 (440)
T 1yks_A 103 IIMDEAHFL-DPASIAARGWAAHRAR----ANESATILMTATPPGTSDEFPH---------------------------S 150 (440)
T ss_dssp EEETTTTCC-SHHHHHHHHHHHHHHH----TTSCEEEEECSSCTTCCCSSCC---------------------------C
T ss_pred EEEECcccc-CcchHHHHHHHHHHhc----cCCceEEEEeCCCCchhhhhhh---------------------------c
Confidence 999999998 3333333333333321 2568999999999865432110 0
Q ss_pred CCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHH
Q psy16310 1037 SPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 1116 (1493)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R 1116 (1493)
......+.. .+.... ...++..+...++++||||+++..|+.++..|...++.+..+|| .+|
T Consensus 151 ~~~~~~~~~-------------~~~~~~-~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R 212 (440)
T 1yks_A 151 NGEIEDVQT-------------DIPSEP-WNTGHDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTF 212 (440)
T ss_dssp SSCEEEEEC-------------CCCSSC-CSSSCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSC
T ss_pred CCCeeEeee-------------ccChHH-HHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhH
Confidence 000110000 011111 11123445556889999999999999999999999999999999 468
Q ss_pred HHHHHHHhcCCCCeEEeehhhhccccCCCccEEEE-------------------ecCCCChhHHHHHHhccCCC-CCCCe
Q psy16310 1117 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH-------------------YHVPRTSEIYIHRSGRTARA-NNEGL 1176 (1493)
Q Consensus 1117 ~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~-------------------~d~p~s~~~yiqr~GR~gR~-g~~G~ 1176 (1493)
..+++.|++|+++|||||+++++|+|+| +++||+ |+.|.+..+|+||+||+||. |+.|.
T Consensus 213 ~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~ 291 (440)
T 1yks_A 213 EREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGD 291 (440)
T ss_dssp C--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCE
T ss_pred HHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCce
Confidence 8999999999999999999999999999 999996 89999999999999999997 68999
Q ss_pred EEEEe---cCCCHHHHHHHHHh
Q psy16310 1177 TLVLI---ESDEIPLYIKMFNS 1195 (1493)
Q Consensus 1177 ~i~l~---~~~e~~~~~~~~~~ 1195 (1493)
|++|+ ++.+...+..+...
T Consensus 292 ~~~l~~~~~~~~~~~l~~l~~~ 313 (440)
T 1yks_A 292 SYYYSEPTSENNAHHVCWLEAS 313 (440)
T ss_dssp EEEECSCCCCCCTTBHHHHHHH
T ss_pred EEEEeccCChhhhhhhhhhhHH
Confidence 99996 56666555555443
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=374.07 Aligned_cols=328 Identities=16% Similarity=0.192 Sum_probs=229.6
Q ss_pred CCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcch
Q psy16310 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 867 (1493)
Q Consensus 788 ~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1493)
...|+|+|.++++.++ .++++++++|||||||++|++|++..+..
T Consensus 111 ~~~l~~~Q~~ai~~~~-~~~~~ll~~~tGsGKT~~~~~~~~~~~~~---------------------------------- 155 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGL-VNRRRILNLPTSAGRSLIQALLARYYLEN---------------------------------- 155 (510)
T ss_dssp EECCCHHHHHHHHHHH-HHSEEEEECCSTTTHHHHHHHHHHHHHHH----------------------------------
T ss_pred CCCCCHHHHHHHHHHH-hcCCcEEEeCCCCCHHHHHHHHHHHHHhC----------------------------------
Confidence 4589999999998655 55899999999999999999998876522
Q ss_pred hhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCc
Q psy16310 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947 (1493)
Q Consensus 868 ~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~ 947 (1493)
.+.++|||+||++|+.|+++.+.+++...+..+..++||.....+ +...++|+|+||+.|... .
T Consensus 156 -------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~--- 219 (510)
T 2oca_A 156 -------YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---P--- 219 (510)
T ss_dssp -------CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---C---
T ss_pred -------CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---h---
Confidence 123799999999999999999999877777889999998766544 456789999999976432 1
Q ss_pred cccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhh--ccCcCcccccCCCch
Q psy16310 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLK--KGQSKSKKVSKGDPS 1025 (1493)
Q Consensus 948 ~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~--~~~~~~~~~~~~~~~ 1025 (1493)
...+.++++|||||||++.. ..+..++..+ ....++++||||+++......... .+... ......
T Consensus 220 ~~~~~~~~liIiDE~H~~~~----~~~~~il~~~-----~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~-~~~~~~--- 286 (510)
T 2oca_A 220 KEWFSQFGMMMNDECHLATG----KSISSIISGL-----NNCMFKFGLSGSLRDGKANIMQYVGMFGEIF-KPVTTS--- 286 (510)
T ss_dssp GGGGGGEEEEEEETGGGCCH----HHHHHHGGGC-----TTCCEEEEEESCGGGCSSCHHHHHHHHCSEE-CCCCCC---
T ss_pred hhhhhcCCEEEEECCcCCCc----ccHHHHHHhc-----ccCcEEEEEEeCCCCCcccHHHhHHhhCCeE-EeeCHH---
Confidence 13466899999999999865 4566666555 356789999999986643321110 00000 000000
Q ss_pred hHHHHhHhccCCCcEEeccccc--ccc-----cccee-eEEEecccchhhHHHHHHHhC---CC-cEEEEecchhhHHHH
Q psy16310 1026 IKRLQDLLNIKSPKIVDLTEKI--GIT-----KTLTE-SKILCKHDEKDSYLYYFILQH---PG-RTLVFCNSISSVKRL 1093 (1493)
Q Consensus 1026 ~~~l~~~~~~~~~~~~~~~~~~--~~~-----~~~~~-~~~~~~~~~k~~~l~~~l~~~---~~-~~IVF~~s~~~~~~l 1093 (1493)
.....-.+............ ... ..... ....+....+...+..++... ++ ++||||+ +..+..+
T Consensus 287 --~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l 363 (510)
T 2oca_A 287 --KLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAI 363 (510)
T ss_dssp -----------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHH
T ss_pred --HHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHH
Confidence 00000001111110000000 000 00000 001111223333444444432 44 4555555 8899999
Q ss_pred HHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEee-hhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCC
Q psy16310 1094 TQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT-DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARAN 1172 (1493)
Q Consensus 1094 ~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaT-dv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g 1172 (1493)
+..|...+..+..+||+|++.+|..+++.|++|+.+||||| +++++|+|+|++++||++++|.+...|+||+||+||.|
T Consensus 364 ~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g 443 (510)
T 2oca_A 364 FDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKH 443 (510)
T ss_dssp HHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTT
T ss_pred HHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccC
Confidence 99999998899999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCCeEEEEec
Q psy16310 1173 NEGLTLVLIE 1182 (1493)
Q Consensus 1173 ~~G~~i~l~~ 1182 (1493)
..|.++++++
T Consensus 444 ~~~~~v~i~~ 453 (510)
T 2oca_A 444 GSKTIATVWD 453 (510)
T ss_dssp CCCCCCEEEE
T ss_pred CCCceEEEEE
Confidence 8875555554
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-35 Score=377.67 Aligned_cols=334 Identities=16% Similarity=0.182 Sum_probs=239.1
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCC
Q psy16310 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 845 (1493)
Q Consensus 766 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 845 (1493)
++..|.++++++.+.+.+...| ..|+++|.++|+.++.++++++++||||||||+ ++|++......
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~----------- 135 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM----------- 135 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC-----------
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc-----------
Confidence 4567999999999999999988 899999999999999888899999999999999 56666211100
Q ss_pred cchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhh-CCCCcEEEEEEcCCCHHHHHHHhc
Q psy16310 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG-KYTPVKVACVVGGMSTEKQLRILN 924 (1493)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~-~~~~~~v~~~~gg~~~~~~~~~l~ 924 (1493)
....+.+++|++|||+||.|+++.+.... ...+..++.-..... ...
T Consensus 136 --------------------------~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~ 183 (773)
T 2xau_A 136 --------------------------PHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTS 183 (773)
T ss_dssp --------------------------GGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECC
T ss_pred --------------------------ccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccC
Confidence 01124579999999999999998775543 122222222111100 112
Q ss_pred CCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccch-hccCCC-hhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 925 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR-MIESGH-FPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 925 ~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~-ll~~~~-~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
...+|+|+|||++...+.... .+.++++|||||||. +++..+ ...+..+.... +..|++++|||++..
T Consensus 184 ~~~~I~v~T~G~l~r~l~~~~----~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~------~~~~iIl~SAT~~~~ 253 (773)
T 2xau_A 184 NKTILKYMTDGMLLREAMEDH----DLSRYSCIILDEAHERTLATDILMGLLKQVVKRR------PDLKIIIMSATLDAE 253 (773)
T ss_dssp TTCSEEEEEHHHHHHHHHHST----TCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC------TTCEEEEEESCSCCH
T ss_pred CCCCEEEECHHHHHHHHhhCc----cccCCCEEEecCccccccchHHHHHHHHHHHHhC------CCceEEEEeccccHH
Confidence 357899999999998876542 367899999999995 555322 22233333221 468999999999632
Q ss_pred hHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHH----HHHHHh-CC
Q psy16310 1003 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYL----YYFILQ-HP 1077 (1493)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l----~~~l~~-~~ 1077 (1493)
. ..... ....++.+... ...+...+......+..... ..+... .+
T Consensus 254 ~--l~~~~-------------------------~~~~vi~v~gr---~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 303 (773)
T 2xau_A 254 K--FQRYF-------------------------NDAPLLAVPGR---TYPVELYYTPEFQRDYLDSAIRTVLQIHATEEA 303 (773)
T ss_dssp H--HHHHT-------------------------TSCCEEECCCC---CCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCS
T ss_pred H--HHHHh-------------------------cCCCcccccCc---ccceEEEEecCCchhHHHHHHHHHHHHHHhcCC
Confidence 1 11111 01111221111 11122222222222322222 222222 47
Q ss_pred CcEEEEecchhhHHHHHHHHHh-----------cCCCccccccCCCHHHHHHHHHHHh-----cCCCCeEEeehhhhccc
Q psy16310 1078 GRTLVFCNSISSVKRLTQLLTM-----------LKCSPLPLHASMNQRQRLKNLDRFR-----DQNNSILLATDVAARGL 1141 (1493)
Q Consensus 1078 ~~~IVF~~s~~~~~~l~~~L~~-----------~~~~~~~lhg~m~~~~R~~~~~~F~-----~g~~~VLVaTdv~~~Gi 1141 (1493)
+++||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|+ .|..+|||||+++++||
T Consensus 304 g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~Gi 383 (773)
T 2xau_A 304 GDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSL 383 (773)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTC
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCc
Confidence 8999999999999999999975 4778999999999999999999999 99999999999999999
Q ss_pred cCCCccEEEEecC------------------CCChhHHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1142 DIPGIEHVIHYHV------------------PRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1142 Dip~v~~VI~~d~------------------p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
|+|+|++||++++ |.+..+|+||+|||||. +.|.|+.|+++.+.
T Consensus 384 dIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 384 TIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp CCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 9999999999887 89999999999999999 79999999976543
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=380.61 Aligned_cols=323 Identities=18% Similarity=0.211 Sum_probs=235.8
Q ss_pred cCCCHHHHHHHH-HCCCCCChHHHHhhhhhhhcc---CC--cEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 156 FNIPETIIRALY-QKGFKTPTKIQSMVMPSALLA---RK--DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 156 l~l~~~l~~~l~-~~g~~~pt~iQ~~~i~~~l~~---~~--dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
++++....+.+. ..+|. |||+|.++++.++.. ++ |+|+|+|||||||++|+++++..+.
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-------------- 650 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-------------- 650 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------------
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------------
Confidence 456667666664 45885 799999999966542 55 9999999999999999999876542
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHH---HHh
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL---RIL 306 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~---~~l 306 (1493)
.+.+++||+||++||.|+++.+.......++++..++|..+..... ..+
T Consensus 651 ----------------------------~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l 702 (1151)
T 2eyq_A 651 ----------------------------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV 702 (1151)
T ss_dssp ----------------------------TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHH
T ss_pred ----------------------------hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHH
Confidence 3457999999999999999999988887889999999887765543 333
Q ss_pred cC-CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchh
Q psy16310 307 NK-CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385 (1493)
Q Consensus 307 ~~-~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~ 385 (1493)
.. .++|+|+||+.|. ... .+.++++|||||||++ ......++..+
T Consensus 703 ~~g~~dIvV~T~~ll~-----~~~---~~~~l~lvIiDEaH~~-----g~~~~~~l~~l--------------------- 748 (1151)
T 2eyq_A 703 AEGKIDILIGTHKLLQ-----SDV---KFKDLGLLIVDEEHRF-----GVRHKERIKAM--------------------- 748 (1151)
T ss_dssp HTTCCSEEEECTHHHH-----SCC---CCSSEEEEEEESGGGS-----CHHHHHHHHHH---------------------
T ss_pred hcCCCCEEEECHHHHh-----CCc---cccccceEEEechHhc-----ChHHHHHHHHh---------------------
Confidence 33 5899999998763 222 3568899999999985 22334444433
Q ss_pred hhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccc
Q psy16310 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLT 465 (1493)
Q Consensus 386 ~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1493)
....++++||||+.+.......... .....+...
T Consensus 749 ------------~~~~~vl~lSATp~p~~l~~~~~~~------------------------~~~~~i~~~---------- 782 (1151)
T 2eyq_A 749 ------------RANVDILTLTATPIPRTLNMAMSGM------------------------RDLSIIATP---------- 782 (1151)
T ss_dssp ------------HTTSEEEEEESSCCCHHHHHHHTTT------------------------SEEEECCCC----------
T ss_pred ------------cCCCCEEEEcCCCChhhHHHHHhcC------------------------CCceEEecC----------
Confidence 2346899999998654332211000 000000000
Q ss_pred hhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHH--hhC
Q psy16310 466 ESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFI--LQH 543 (1493)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l--~~~ 543 (1493)
+.. .. .+... . ...........++ ...
T Consensus 783 ----------------------~~~----------------------r~----~i~~~--~-~~~~~~~i~~~il~~l~~ 811 (1151)
T 2eyq_A 783 ----------------------PAR----------------------RL----AVKTF--V-REYDSMVVREAILREILR 811 (1151)
T ss_dssp ----------------------CCB----------------------CB----CEEEE--E-EECCHHHHHHHHHHHHTT
T ss_pred ----------------------CCC----------------------cc----ccEEE--E-ecCCHHHHHHHHHHHHhc
Confidence 000 00 00000 0 0000111111111 124
Q ss_pred CCcEEEEecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecC
Q psy16310 544 PGRTLVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV 621 (1493)
Q Consensus 544 ~~~~IIF~~s~~~a~~L~~~L~~~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~ 621 (1493)
+++++|||+++.+++.++..|... +..+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+++.
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~ 891 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 891 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCC
Confidence 679999999999999999999887 788999999999999999999999999999999999999999999999999998
Q ss_pred -CCChHHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 622 -PRTSEIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 622 -P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
+.++..|+||+||+||.|+.|+|++++.+.+
T Consensus 892 ~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 892 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred CCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 4689999999999999999999999997654
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=360.48 Aligned_cols=279 Identities=18% Similarity=0.179 Sum_probs=189.2
Q ss_pred hhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEE
Q psy16310 185 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 264 (1493)
Q Consensus 185 ~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLi 264 (1493)
++..|+|++++||||||||++|++|+++.+.. .+++++|
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-----------------------------------------~~~~~li 42 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-----------------------------------------RRLRTLV 42 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------------------------------------TTCCEEE
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-----------------------------------------cCCeEEE
Confidence 56688999999999999999999999987643 2357999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCC-----ccccccccccE
Q psy16310 265 LAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH-----FHLTELYKINY 339 (1493)
Q Consensus 265 L~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~-----~~~~~l~~i~~ 339 (1493)
|+||++||.|+++.+..+ + +....+.. -.|+||+++++++.++. .....+.++++
T Consensus 43 l~Ptr~La~Q~~~~l~~~----~--v~~~~~~~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~ 102 (440)
T 1yks_A 43 LAPTRVVLSEMKEAFHGL----D--VKFHTQAF--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEV 102 (440)
T ss_dssp EESSHHHHHHHHHHTTTS----C--EEEESSCC--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSE
T ss_pred EcchHHHHHHHHHHHhcC----C--eEEecccc--------------eeccCCccceeeecccchhHhhhCcccccCccE
Confidence 999999999999988643 2 22211111 13788877654333221 11123568999
Q ss_pred EEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhh
Q psy16310 340 LVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 419 (1493)
Q Consensus 340 lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~ 419 (1493)
|||||||++ +.++...+..+...+. ...+|+++||||+++.+..+..
T Consensus 103 vViDEah~~-~~~~~~~~~~~~~~~~--------------------------------~~~~~~l~~SAT~~~~~~~~~~ 149 (440)
T 1yks_A 103 IIMDEAHFL-DPASIAARGWAAHRAR--------------------------------ANESATILMTATPPGTSDEFPH 149 (440)
T ss_dssp EEETTTTCC-SHHHHHHHHHHHHHHH--------------------------------TTSCEEEEECSSCTTCCCSSCC
T ss_pred EEEECcccc-CcchHHHHHHHHHHhc--------------------------------cCCceEEEEeCCCCchhhhhhh
Confidence 999999998 3332222222222110 2347999999999865433221
Q ss_pred hhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhh
Q psy16310 420 LKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDL 499 (1493)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1493)
. ....... .. .
T Consensus 150 ~---------------------------~~~~~~~----------~~---~----------------------------- 160 (440)
T 1yks_A 150 S---------------------------NGEIEDV----------QT---D----------------------------- 160 (440)
T ss_dssp C---------------------------SSCEEEE----------EC---C-----------------------------
T ss_pred c---------------------------CCCeeEe----------ee---c-----------------------------
Confidence 0 0000000 00 0
Q ss_pred hhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCC
Q psy16310 500 LNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 579 (1493)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~ 579 (1493)
+.... ...++..+...++++||||+++..++.++..|...++.+..+||
T Consensus 161 ---------------------------~~~~~-~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg--- 209 (440)
T 1yks_A 161 ---------------------------IPSEP-WNTGHDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR--- 209 (440)
T ss_dssp ---------------------------CCSSC-CSSSCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS---
T ss_pred ---------------------------cChHH-HHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc---
Confidence 00000 00011233345679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE-------------------ecCCCChHHHHHHHhccccC-C
Q psy16310 580 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH-------------------YHVPRTSEIYIHRSGRTARA-N 639 (1493)
Q Consensus 580 ~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~-------------------yd~P~s~~~yiQR~GRagR~-g 639 (1493)
.+|..+++.|++|+++|||||+++++|||+| +++||+ |+.|.+..+|+||+|||||. |
T Consensus 210 -~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 287 (440)
T 1yks_A 210 -KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN 287 (440)
T ss_dssp -SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred -hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCC
Confidence 4688999999999999999999999999999 999996 99999999999999999997 6
Q ss_pred CCCeEEEEe---cCCcchhhhhh
Q psy16310 640 NEGLTVVLI---ESDEIPLKTKF 659 (1493)
Q Consensus 640 ~~G~~i~l~---~~~e~~~~~~l 659 (1493)
.+|.|++|+ ++.+...+..+
T Consensus 288 ~~g~~~~l~~~~~~~~~~~l~~l 310 (440)
T 1yks_A 288 RDGDSYYYSEPTSENNAHHVCWL 310 (440)
T ss_dssp CCCEEEEECSCCCCCCTTBHHHH
T ss_pred CCceEEEEeccCChhhhhhhhhh
Confidence 899999997 45555544443
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=383.81 Aligned_cols=303 Identities=19% Similarity=0.216 Sum_probs=204.5
Q ss_pred HHHHCCCC-----CChHHHH-----hhhhhhh-----ccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 165 ALYQKGFK-----TPTKIQS-----MVMPSAL-----LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 165 ~l~~~g~~-----~pt~iQ~-----~~i~~~l-----~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
++..+||. .||++|+ ++||.++ ..++|+|++||||||||++|++|+++.+..
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~------------- 268 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ------------- 268 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------------
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------------
Confidence 44556777 8999999 9998544 278999999999999999999999987642
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
.+.++|||+||++||.|+++.+..+ ++. ...+.... .-..+
T Consensus 269 ----------------------------~~~~~lilaPTr~La~Q~~~~l~~~----~i~--~~~~~l~~-----v~tp~ 309 (673)
T 2wv9_A 269 ----------------------------KRLRTAVLAPTRVVAAEMAEALRGL----PVR--YLTPAVQR-----EHSGN 309 (673)
T ss_dssp ----------------------------TTCCEEEEESSHHHHHHHHHHTTTS----CCE--ECCC---C-----CCCSC
T ss_pred ----------------------------CCCcEEEEccHHHHHHHHHHHHhcC----Cee--eecccccc-----cCCHH
Confidence 2357999999999999999988654 222 11111000 00011
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
.-+-+.+.+.+...+... ..+.++++|||||||++ +..+...+..+...+.
T Consensus 310 ~ll~~l~~~~l~~~l~~~----~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~------------------------ 360 (673)
T 2wv9_A 310 EIVDVMCHATLTHRLMSP----LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVE------------------------ 360 (673)
T ss_dssp CCEEEEEHHHHHHHHHSS----SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHhhhhHHHHhcc----cccccceEEEEeCCccc-CccHHHHHHHHHHhcc------------------------
Confidence 122333334443333221 23668999999999988 2111122222222110
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKI 469 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1493)
...+|+++||||++..+..+... ...+..+..
T Consensus 361 --------~~~~~vl~~SAT~~~~i~~~~~~---------------------------~~~i~~v~~------------- 392 (673)
T 2wv9_A 361 --------AGEAAAIFMTATPPGTSDPFPDT---------------------------NSPVHDVSS------------- 392 (673)
T ss_dssp --------TTSCEEEEECSSCTTCCCSSCCC---------------------------SSCEEEEEC-------------
T ss_pred --------ccCCcEEEEcCCCChhhhhhccc---------------------------CCceEEEee-------------
Confidence 23479999999998654332210 000000000
Q ss_pred hhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEE
Q psy16310 470 LCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLV 549 (1493)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~II 549 (1493)
..+ . .....++..+....+++||
T Consensus 393 ----------------~~~----------------------------------------~-~~~~~~l~~l~~~~~~~lV 415 (673)
T 2wv9_A 393 ----------------EIP----------------------------------------D-RAWSSGFEWITDYAGKTVW 415 (673)
T ss_dssp ----------------CCC----------------------------------------S-SCCSSCCHHHHSCCSCEEE
T ss_pred ----------------ecC----------------------------------------H-HHHHHHHHHHHhCCCCEEE
Confidence 000 0 0000011223345679999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE-----------
Q psy16310 550 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH----------- 618 (1493)
Q Consensus 550 F~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~----------- 618 (1493)
||+++..++.++..|...++.+..+||. +|..+++.|++|+.+|||||+++++|||+| +++||+
T Consensus 416 F~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~ 490 (673)
T 2wv9_A 416 FVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILD 490 (673)
T ss_dssp ECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEEC
T ss_pred EECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeee
Confidence 9999999999999999999999999994 789999999999999999999999999999 999998
Q ss_pred ---------ecCCCChHHHHHHHhccccC-CCCCeEEEEe---cCCcchhhhh
Q psy16310 619 ---------YHVPRTSEIYIHRSGRTARA-NNEGLTVVLI---ESDEIPLKTK 658 (1493)
Q Consensus 619 ---------yd~P~s~~~yiQR~GRagR~-g~~G~~i~l~---~~~e~~~~~~ 658 (1493)
||+|.+..+|+||+|||||. |++|.|++|+ ++.|......
T Consensus 491 da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ 543 (673)
T 2wv9_A 491 EGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHW 543 (673)
T ss_dssp STTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHH
T ss_pred cccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHH
Confidence 67999999999999999999 7899999997 4555544444
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=360.71 Aligned_cols=281 Identities=19% Similarity=0.242 Sum_probs=205.6
Q ss_pred ChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhh
Q psy16310 174 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 253 (1493)
Q Consensus 174 pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1493)
|...|++.++.++.++++++++||||||||++|.+|+++
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~----------------------------------------- 255 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA----------------------------------------- 255 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-----------------------------------------
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-----------------------------------------
Confidence 444445555558888899999999999999999998873
Q ss_pred hcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccc
Q psy16310 254 KKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTE 333 (1493)
Q Consensus 254 ~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~ 333 (1493)
.+.++||++|||+||.|+++.+.... +..+...+|+.. +..+++|+|+|||+|+ ..... .
T Consensus 256 ----~g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~~~l---~ 315 (666)
T 3o8b_A 256 ----QGYKVLVLNPSVAATLGFGAYMSKAH---GIDPNIRTGVRT-------ITTGAPVTYSTYGKFL---ADGGC---S 315 (666)
T ss_dssp ----TTCCEEEEESCHHHHHHHHHHHHHHH---SCCCEEECSSCE-------ECCCCSEEEEEHHHHH---HTTSC---C
T ss_pred ----CCCeEEEEcchHHHHHHHHHHHHHHh---CCCeeEEECcEe-------ccCCCCEEEECcHHHH---hCCCc---c
Confidence 12469999999999999998776653 455677777754 4567899999999983 33333 2
Q ss_pred cccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchh
Q psy16310 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 413 (1493)
Q Consensus 334 l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~ 413 (1493)
+.++++||||||| +++.++...+..+++.+... ....++++|||++..
T Consensus 316 l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~-------------------------------~~~llil~SAT~~~~ 363 (666)
T 3o8b_A 316 GGAYDIIICDECH-STDSTTILGIGTVLDQAETA-------------------------------GARLVVLATATPPGS 363 (666)
T ss_dssp TTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTT-------------------------------TCSEEEEEESSCTTC
T ss_pred cCcccEEEEccch-hcCccHHHHHHHHHHhhhhc-------------------------------CCceEEEECCCCCcc
Confidence 5579999999996 55777877788887766321 112367789999853
Q ss_pred hhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchh
Q psy16310 414 LKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLC 493 (1493)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (1493)
+.. .. +....... .......
T Consensus 364 i~~----------------~~--------------p~i~~v~~---------------~~~~~i~--------------- 383 (666)
T 3o8b_A 364 VTV----------------PH--------------PNIEEVAL---------------SNTGEIP--------------- 383 (666)
T ss_dssp CCC----------------CC--------------TTEEEEEC---------------BSCSSEE---------------
T ss_pred ccc----------------CC--------------cceEEEee---------------cccchhH---------------
Confidence 210 00 00000000 0000000
Q ss_pred hHHHhhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccc
Q psy16310 494 EEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLP 573 (1493)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~ 573 (1493)
.. .... . +-...++++||||++++.++.+++.|...++.+..
T Consensus 384 --------~~-------~~~~-----------~------------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~ 425 (666)
T 3o8b_A 384 --------FY-------GKAI-----------P------------IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVA 425 (666)
T ss_dssp --------ET-------TEEE-----------C------------GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEE
T ss_pred --------HH-------Hhhh-----------h------------hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEE
Confidence 00 0000 0 00113579999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEE----------Eec-----------CCCChHHHHHHH
Q psy16310 574 LHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI----------HYH-----------VPRTSEIYIHRS 632 (1493)
Q Consensus 574 lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI----------~yd-----------~P~s~~~yiQR~ 632 (1493)
+||+|++.+ |+++..+|||||+++++|||+| |++|| ||| +|.+..+|+||+
T Consensus 426 lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRi 497 (666)
T 3o8b_A 426 YYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRR 497 (666)
T ss_dssp ECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHH
T ss_pred ecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHh
Confidence 999999875 5567779999999999999997 99998 677 899999999999
Q ss_pred hccccCCCCCeEEEEecCCcchh
Q psy16310 633 GRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 633 GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
||||| |++|. ++|+++.|...
T Consensus 498 GRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 498 GRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp TTBCS-SSCEE-EEESCCCCBCS
T ss_pred ccCCC-CCCCE-EEEEecchhhc
Confidence 99999 99999 99999988665
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=360.71 Aligned_cols=273 Identities=21% Similarity=0.246 Sum_probs=197.1
Q ss_pred HHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEE
Q psy16310 800 PSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 879 (1493)
Q Consensus 800 ~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (1493)
+.++..+++++++||||||||++|++|+++.+.. .+.++
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-----------------------------------------~~~~~ 53 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-----------------------------------------QRLRT 53 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-----------------------------------------TTCCE
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-----------------------------------------CCCcE
Confidence 4567788999999999999999999999987642 23579
Q ss_pred EEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEe
Q psy16310 880 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVI 959 (1493)
Q Consensus 880 lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVl 959 (1493)
||++|||+||.|+++.+. +..+....+..... -..+..+.++|.+.+...+... ..+.++++|||
T Consensus 54 lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~----~~l~~~~~iVi 118 (459)
T 2z83_A 54 AVLAPTRVVAAEMAEALR------GLPVRYQTSAVQRE-----HQGNEIVDVMCHATLTHRLMSP----NRVPNYNLFVM 118 (459)
T ss_dssp EEEECSHHHHHHHHHHTT------TSCEEECC-------------CCCSEEEEEHHHHHHHHHSC----C-CCCCSEEEE
T ss_pred EEECchHHHHHHHHHHhc------CceEeEEecccccC-----CCCCcEEEEEchHHHHHHhhcc----ccccCCcEEEE
Confidence 999999999999999886 23333222211110 1223357788999887666543 24678999999
Q ss_pred cccch-----hccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhc
Q psy16310 960 DETDR-----MIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLN 1034 (1493)
Q Consensus 960 DEah~-----ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 1034 (1493)
||||+ ++..++... ... ....|+++||||++..+.....
T Consensus 119 DEaH~~~~~~~~~~~~~~~------~~~----~~~~~~il~SAT~~~~~~~~~~-------------------------- 162 (459)
T 2z83_A 119 DEAHFTDPASIAARGYIAT------KVE----LGEAAAIFMTATPPGTTDPFPD-------------------------- 162 (459)
T ss_dssp SSTTCCSHHHHHHHHHHHH------HHH----TTSCEEEEECSSCTTCCCSSCC--------------------------
T ss_pred ECCccCCchhhHHHHHHHH------Hhc----cCCccEEEEEcCCCcchhhhcc--------------------------
Confidence 99998 344333221 111 2578999999999865422110
Q ss_pred cCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHH
Q psy16310 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114 (1493)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~ 1114 (1493)
...+ +..+.... + ......++.++....+++||||+|+..|+.++..|...++.+..+||.
T Consensus 163 ~~~p-i~~~~~~~-------------~-~~~~~~~~~~l~~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~---- 223 (459)
T 2z83_A 163 SNAP-IHDLQDEI-------------P-DRAWSSGYEWITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK---- 223 (459)
T ss_dssp CSSC-EEEEECCC-------------C-SSCCSSCCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----
T ss_pred CCCC-eEEecccC-------------C-cchhHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----
Confidence 0011 11110000 0 001111223455568899999999999999999999999999999995
Q ss_pred HHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEE--------------------ecCCCChhHHHHHHhccCCCCC-
Q psy16310 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH--------------------YHVPRTSEIYIHRSGRTARANN- 1173 (1493)
Q Consensus 1115 ~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~--------------------~d~p~s~~~yiqr~GR~gR~g~- 1173 (1493)
+|..+++.|++|+.+|||||+++++|||+|+ ++||+ |++|.+..+|+||+|||||.|+
T Consensus 224 ~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~ 302 (459)
T 2z83_A 224 SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ 302 (459)
T ss_dssp CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC
T ss_pred HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCC
Confidence 6888999999999999999999999999999 99999 7799999999999999999997
Q ss_pred CCeEEEEecCC
Q psy16310 1174 EGLTLVLIESD 1184 (1493)
Q Consensus 1174 ~G~~i~l~~~~ 1184 (1493)
.|.+++|+.+.
T Consensus 303 ~G~~~~~~~~~ 313 (459)
T 2z83_A 303 VGDEYHYGGAT 313 (459)
T ss_dssp CCEEEEECSCC
T ss_pred CCeEEEEEccc
Confidence 99999999875
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=369.34 Aligned_cols=335 Identities=16% Similarity=0.192 Sum_probs=232.8
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 149 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
...+|.++++++.+.+.+...+ ..|+++|+++|+.++.++++++++||||||||+ ++|++-....
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~------------ 134 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE------------ 134 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH------------
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc------------
Confidence 3457999999999999999888 789999999999899888899999999999999 4666511100
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhc-CCCCeEEEEEEcCCCHHHHHHHhc
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG-KYTPVKVACVVGGMSTEKQLRILN 307 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~-~~~~i~v~~~~G~~~~~~~~~~l~ 307 (1493)
.....+.+++|++|||+||.|+.+.+.... ...+..++.-..... ...
T Consensus 135 -------------------------~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~ 183 (773)
T 2xau_A 135 -------------------------MPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTS 183 (773)
T ss_dssp -------------------------CGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECC
T ss_pred -------------------------cccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccC
Confidence 001124679999999999999988765433 222222221111100 112
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCch-hhhcCChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR-MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~-ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
...+|+|+|||+|.+.+.... .+.++++|||||||. .++..+ +..++..+...
T Consensus 184 ~~~~I~v~T~G~l~r~l~~~~----~l~~~~~lIlDEah~R~ld~d~---~~~~l~~l~~~------------------- 237 (773)
T 2xau_A 184 NKTILKYMTDGMLLREAMEDH----DLSRYSCIILDEAHERTLATDI---LMGLLKQVVKR------------------- 237 (773)
T ss_dssp TTCSEEEEEHHHHHHHHHHST----TCTTEEEEEECSGGGCCHHHHH---HHHHHHHHHHH-------------------
T ss_pred CCCCEEEECHHHHHHHHhhCc----cccCCCEEEecCccccccchHH---HHHHHHHHHHh-------------------
Confidence 456899999999998876542 366899999999996 554321 22222222110
Q ss_pred hhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccch
Q psy16310 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTE 466 (1493)
Q Consensus 387 ~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1493)
.+..|+++||||++.. .+.. ++. ....+...... ..+.
T Consensus 238 -----------~~~~~iIl~SAT~~~~--~l~~-----------------------~~~--~~~vi~v~gr~---~pv~- 275 (773)
T 2xau_A 238 -----------RPDLKIIIMSATLDAE--KFQR-----------------------YFN--DAPLLAVPGRT---YPVE- 275 (773)
T ss_dssp -----------CTTCEEEEEESCSCCH--HHHH-----------------------HTT--SCCEEECCCCC---CCEE-
T ss_pred -----------CCCceEEEEeccccHH--HHHH-----------------------Hhc--CCCcccccCcc---cceE-
Confidence 1246999999999632 1111 110 00000000000 0000
Q ss_pred hhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCc----hhhHHHHHHhh
Q psy16310 467 SKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDE----KDSYLYYFILQ 542 (1493)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----k~~~l~~~l~~ 542 (1493)
..+....... ....+...+..
T Consensus 276 -------------------------------------------------------~~~~~~~~~~~~~~~l~~l~~~~~~ 300 (773)
T 2xau_A 276 -------------------------------------------------------LYYTPEFQRDYLDSAIRTVLQIHAT 300 (773)
T ss_dssp -------------------------------------------------------EECCSSCCSCHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------EEEecCCchhHHHHHHHHHHHHHHh
Confidence 0000000000 11122222222
Q ss_pred -CCCcEEEEecchhhHHHHHHHHHh-----------cCCCccccccCCCHHHHHHHHHHHh-----cCCCeEEEEechhh
Q psy16310 543 -HPGRTLVFCNSISSVKRLTQLLTM-----------LKCSPLPLHASMNQRQRLKNLDRFR-----DQNNSILLATDVAA 605 (1493)
Q Consensus 543 -~~~~~IIF~~s~~~a~~L~~~L~~-----------~~~~~~~lhg~~~~~~R~~vl~~Fr-----~g~~~VLVaTdv~~ 605 (1493)
.++++||||+++.+++.++..|.. .++.+..+||+|++.+|..+++.|+ +|..+|||||++++
T Consensus 301 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae 380 (773)
T 2xau_A 301 EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAE 380 (773)
T ss_dssp SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHH
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHH
Confidence 478999999999999999999974 4778899999999999999999999 99999999999999
Q ss_pred ccCCCCCCcEEEEecC------------------CCChHHHHHHHhccccCCCCCeEEEEecCCcc
Q psy16310 606 RGLDIPGIEHVIHYHV------------------PRTSEIYIHRSGRTARANNEGLTVVLIESDEI 653 (1493)
Q Consensus 606 rGlDip~v~~VI~yd~------------------P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~ 653 (1493)
+|||||+|++||+|++ |.+..+|+||+|||||. .+|.|++|+++.+.
T Consensus 381 ~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 381 TSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp HTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred hCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 9999999999999887 89999999999999999 69999999987654
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=360.72 Aligned_cols=337 Identities=15% Similarity=0.189 Sum_probs=227.1
Q ss_pred CCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcch
Q psy16310 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250 (1493)
Q Consensus 171 ~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1493)
...|+|+|.++++.++ .++++++++|||||||++|++++...+..
T Consensus 111 ~~~l~~~Q~~ai~~~~-~~~~~ll~~~tGsGKT~~~~~~~~~~~~~---------------------------------- 155 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGL-VNRRRILNLPTSAGRSLIQALLARYYLEN---------------------------------- 155 (510)
T ss_dssp EECCCHHHHHHHHHHH-HHSEEEEECCSTTTHHHHHHHHHHHHHHH----------------------------------
T ss_pred CCCCCHHHHHHHHHHH-hcCCcEEEeCCCCCHHHHHHHHHHHHHhC----------------------------------
Confidence 3479999999998555 56899999999999999999988866531
Q ss_pred hhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcc
Q psy16310 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330 (1493)
Q Consensus 251 ~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~ 330 (1493)
.+.++|||+||++|+.|+++.|..++...++.+..++|+.....+ +...++|+|+||+.|... .
T Consensus 156 -------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~--- 219 (510)
T 2oca_A 156 -------YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---P--- 219 (510)
T ss_dssp -------CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---C---
T ss_pred -------CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---h---
Confidence 123799999999999999999999877667889999988765543 456689999999987432 1
Q ss_pred ccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeecc
Q psy16310 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 410 (1493)
Q Consensus 331 ~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl 410 (1493)
...+.++++|||||||++.. ..+..++..+ ....++++||||+
T Consensus 220 ~~~~~~~~liIiDE~H~~~~----~~~~~il~~~---------------------------------~~~~~~l~lSATp 262 (510)
T 2oca_A 220 KEWFSQFGMMMNDECHLATG----KSISSIISGL---------------------------------NNCMFKFGLSGSL 262 (510)
T ss_dssp GGGGGGEEEEEEETGGGCCH----HHHHHHGGGC---------------------------------TTCCEEEEEESCG
T ss_pred hhhhhcCCEEEEECCcCCCc----ccHHHHHHhc---------------------------------ccCcEEEEEEeCC
Confidence 12355789999999999864 3455554433 2346899999999
Q ss_pred chhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCc
Q psy16310 411 THSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGR 490 (1493)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (1493)
++.......... +. .+.......... .... .+......... ...
T Consensus 263 ~~~~~~~~~~~~--------------------~~---~~~~~~~~~~~~----~~~~-~l~~~~~~~~~-----~~~--- 306 (510)
T 2oca_A 263 RDGKANIMQYVG--------------------MF---GEIFKPVTTSKL----MEDG-QVTELKINSIF-----LRY--- 306 (510)
T ss_dssp GGCSSCHHHHHH--------------------HH---CSEECCCCCC--------------CCEEEEEE-----EEC---
T ss_pred CCCcccHHHhHH--------------------hh---CCeEEeeCHHHH----hhCC-cCCCceEEEEe-----ecC---
Confidence 765433221100 00 000000000000 0000 00000000000 000
Q ss_pred chhhHHHhhhhccCCcccccccccccccccc-ccccccccCchhhHHHHHHhhC---CC-cEEEEecchhhHHHHHHHHH
Q psy16310 491 TLCEEIQDLLNIKSPKIVDLTEKIGITKTLT-ESKILCKHDEKDSYLYYFILQH---PG-RTLVFCNSISSVKRLTQLLT 565 (1493)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~~l~~~l~~~---~~-~~IIF~~s~~~a~~L~~~L~ 565 (1493)
........ .. .... ..........+...+..++... ++ .+||||+ ...+..+++.|.
T Consensus 307 --~~~~~~~~--~~-------------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~ 368 (510)
T 2oca_A 307 --PDEFTTKL--KG-------------KTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIK 368 (510)
T ss_dssp --CHHHHHHH--TT-------------CCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHH
T ss_pred --ChHHhccc--cc-------------cchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHH
Confidence 00000000 00 0000 0011112223444444444432 34 5566666 888999999999
Q ss_pred hcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEe-chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeE
Q psy16310 566 MLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT-DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644 (1493)
Q Consensus 566 ~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaT-dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~ 644 (1493)
..+..+..+||+|++.+|..+++.|++|+.+||||| +++++|+|+|+|++||+|++|.++..|+||+||+||.|..|.+
T Consensus 369 ~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~ 448 (510)
T 2oca_A 369 NEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTI 448 (510)
T ss_dssp TTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCC
T ss_pred HcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCce
Confidence 988899999999999999999999999999999999 9999999999999999999999999999999999999988756
Q ss_pred EEEec
Q psy16310 645 VVLIE 649 (1493)
Q Consensus 645 i~l~~ 649 (1493)
+++++
T Consensus 449 v~i~~ 453 (510)
T 2oca_A 449 ATVWD 453 (510)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 66665
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=354.84 Aligned_cols=273 Identities=21% Similarity=0.233 Sum_probs=194.4
Q ss_pred hhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEE
Q psy16310 183 PSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYA 262 (1493)
Q Consensus 183 ~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 262 (1493)
+.++.+++++|++||||||||++|++|+++.+.. .+.++
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-----------------------------------------~~~~~ 53 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-----------------------------------------QRLRT 53 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-----------------------------------------TTCCE
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-----------------------------------------CCCcE
Confidence 4567788999999999999999999999987742 23579
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEE
Q psy16310 263 LILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVI 342 (1493)
Q Consensus 263 LiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lVi 342 (1493)
||++|||+||.|+++.+. ++.+....+..... -..+..+.++|.+.+...+... ..+.++++|||
T Consensus 54 lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~----~~l~~~~~iVi 118 (459)
T 2z83_A 54 AVLAPTRVVAAEMAEALR------GLPVRYQTSAVQRE-----HQGNEIVDVMCHATLTHRLMSP----NRVPNYNLFVM 118 (459)
T ss_dssp EEEECSHHHHHHHHHHTT------TSCEEECC-------------CCCSEEEEEHHHHHHHHHSC----C-CCCCSEEEE
T ss_pred EEECchHHHHHHHHHHhc------CceEeEEecccccC-----CCCCcEEEEEchHHHHHHhhcc----ccccCCcEEEE
Confidence 999999999999999885 22232222221111 1233467889999887766543 23668999999
Q ss_pred ecCch-----hhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhh
Q psy16310 343 DETDR-----MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 417 (1493)
Q Consensus 343 DEAh~-----ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~ 417 (1493)
||||+ ++..++... + . .....|+++||||++..+..+
T Consensus 119 DEaH~~~~~~~~~~~~~~~---~---~--------------------------------~~~~~~~il~SAT~~~~~~~~ 160 (459)
T 2z83_A 119 DEAHFTDPASIAARGYIAT---K---V--------------------------------ELGEAAAIFMTATPPGTTDPF 160 (459)
T ss_dssp SSTTCCSHHHHHHHHHHHH---H---H--------------------------------HTTSCEEEEECSSCTTCCCSS
T ss_pred ECCccCCchhhHHHHHHHH---H---h--------------------------------ccCCccEEEEEcCCCcchhhh
Confidence 99998 333322111 1 0 023579999999998654322
Q ss_pred hhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHH
Q psy16310 418 LNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQ 497 (1493)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (1493)
... ..+ +.... . ..+.
T Consensus 161 ~~~--------------------------~~p-i~~~~-----------------~------------~~~~-------- 176 (459)
T 2z83_A 161 PDS--------------------------NAP-IHDLQ-----------------D------------EIPD-------- 176 (459)
T ss_dssp CCC--------------------------SSC-EEEEE-----------------C------------CCCS--------
T ss_pred ccC--------------------------CCC-eEEec-----------------c------------cCCc--------
Confidence 110 000 00000 0 0000
Q ss_pred hhhhccCCccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccC
Q psy16310 498 DLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577 (1493)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~ 577 (1493)
.....+..++....+++||||+++..++.++..|...++.+..+||.
T Consensus 177 ---------------------------------~~~~~~~~~l~~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~ 223 (459)
T 2z83_A 177 ---------------------------------RAWSSGYEWITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK 223 (459)
T ss_dssp ---------------------------------SCCSSCCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT
T ss_pred ---------------------------------chhHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH
Confidence 00000112234456899999999999999999999999999999995
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE--------------------ecCCCChHHHHHHHhcccc
Q psy16310 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH--------------------YHVPRTSEIYIHRSGRTAR 637 (1493)
Q Consensus 578 ~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~--------------------yd~P~s~~~yiQR~GRagR 637 (1493)
+|..+++.|++|+.+|||||+++++|||+|+ ++||+ ||+|.+..+|+||+|||||
T Consensus 224 ----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR 298 (459)
T 2z83_A 224 ----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGR 298 (459)
T ss_dssp ----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSC
T ss_pred ----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCC
Confidence 6788999999999999999999999999999 99999 7899999999999999999
Q ss_pred CCC-CCeEEEEecCC
Q psy16310 638 ANN-EGLTVVLIESD 651 (1493)
Q Consensus 638 ~g~-~G~~i~l~~~~ 651 (1493)
.|. +|.|++|+++.
T Consensus 299 ~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 299 NPNQVGDEYHYGGAT 313 (459)
T ss_dssp CTTCCCEEEEECSCC
T ss_pred CCCCCCeEEEEEccc
Confidence 997 89999999886
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=350.67 Aligned_cols=316 Identities=17% Similarity=0.152 Sum_probs=216.7
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..|+|+|.++++.+ ..++++++++|||+|||++|+.++...
T Consensus 92 ~~l~~~Q~~ai~~i-~~~~~~ll~~~TGsGKT~~~l~~i~~~-------------------------------------- 132 (472)
T 2fwr_A 92 ISLRDYQEKALERW-LVDKRGCIVLPTGSGKTHVAMAAINEL-------------------------------------- 132 (472)
T ss_dssp CCBCHHHHHHHHHH-TTTTEEEEECCTTSCHHHHHHHHHHHH--------------------------------------
T ss_pred CCcCHHHHHHHHHH-HhcCCEEEEeCCCCCHHHHHHHHHHHc--------------------------------------
Confidence 37999999999854 456789999999999999999987642
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcE-EEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCc
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK-VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~-v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~ 947 (1493)
+.++||||||++|+.|+++.+..+ +++ +..++|+.. ...+|+|+||+.+...+..-
T Consensus 133 -------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~--- 189 (472)
T 2fwr_A 133 -------STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL--- 189 (472)
T ss_dssp -------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHHH---
T ss_pred -------CCCEEEEECCHHHHHHHHHHHHhC----CCcceEEECCCcC---------CcCCEEEEEcHHHHHHHHHh---
Confidence 235999999999999999999884 578 888888754 24699999999987665421
Q ss_pred cccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH--HhhhccC------------
Q psy16310 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS--LNLKKGQ------------ 1013 (1493)
Q Consensus 948 ~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~--~~~~~~~------------ 1013 (1493)
..++++|||||||++...++. .++..+ ...+++++|||+.+..... +....+.
T Consensus 190 ---~~~~~liIvDEaH~~~~~~~~----~~~~~~------~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 256 (472)
T 2fwr_A 190 ---GNRFMLLIFDEVHHLPAESYV----QIAQMS------IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAG 256 (472)
T ss_dssp ---TTTCSEEEEETGGGTTSTTTH----HHHHTC------CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTS
T ss_pred ---cCCCCEEEEECCcCCCChHHH----HHHHhc------CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhc
Confidence 135899999999999887664 344444 3568999999998421110 0000000
Q ss_pred --cCcc---ccc-CCCchhHHHHhH----h-ccCCCcEEeccccccccccc-----------------eeeEEEecccch
Q psy16310 1014 --SKSK---KVS-KGDPSIKRLQDL----L-NIKSPKIVDLTEKIGITKTL-----------------TESKILCKHDEK 1065 (1493)
Q Consensus 1014 --~~~~---~~~-~~~~~~~~l~~~----~-~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~k 1065 (1493)
.... .+. ...+........ + ..-....+.+.........+ ....+.+....+
T Consensus 257 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 336 (472)
T 2fwr_A 257 KHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNK 336 (472)
T ss_dssp CCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHH
T ss_pred CcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHH
Confidence 0000 000 000000000000 0 00000000000000000000 000011334456
Q ss_pred hhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCC
Q psy16310 1066 DSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP 1144 (1493)
Q Consensus 1066 ~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip 1144 (1493)
...+..++... ++++||||+++..++.++..|. +..+||+|+..+|..++++|++|+++|||||+++++|+|+|
T Consensus 337 ~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp 411 (472)
T 2fwr_A 337 IRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVP 411 (472)
T ss_dssp HHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSC
T ss_pred HHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccc
Confidence 66677766665 6799999999999999999883 66799999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCChhHHHHHHhccCCCCCC-CeE--EEEecCC
Q psy16310 1145 GIEHVIHYHVPRTSEIYIHRSGRTARANNE-GLT--LVLIESD 1184 (1493)
Q Consensus 1145 ~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~-G~~--i~l~~~~ 1184 (1493)
++++||+|++|.++..|+||+||+||.|.. +.+ +.|+..+
T Consensus 412 ~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 412 DANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp CBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred cCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 999999999999999999999999999854 344 4455544
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=342.51 Aligned_cols=269 Identities=18% Similarity=0.193 Sum_probs=191.1
Q ss_pred CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEccc
Q psy16310 806 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 885 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PT 885 (1493)
|++++++||||||||++|++|+++.+.. .+.+++|++||
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~-----------------------------------------~g~~~lvl~Pt 40 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK-----------------------------------------KRLRTVILAPT 40 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH-----------------------------------------TTCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh-----------------------------------------CCCCEEEECcH
Confidence 6899999999999999999999966532 23479999999
Q ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchh
Q psy16310 886 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRM 965 (1493)
Q Consensus 886 reLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~l 965 (1493)
++||.|+++.+. ++.+....|+... .-..+..+.+.|.+.+...+... ..+.++++|||||||++
T Consensus 41 ~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~----~~~~~l~~vViDEaH~~ 105 (431)
T 2v6i_A 41 RVVASEMYEALR------GEPIRYMTPAVQS-----ERTGNEIVDFMCHSTFTMKLLQG----VRVPNYNLYIMDEAHFL 105 (431)
T ss_dssp HHHHHHHHHHTT------TSCEEEC--------------CCCSEEEEEHHHHHHHHHHT----CCCCCCSEEEEESTTCC
T ss_pred HHHHHHHHHHhC------CCeEEEEecCccc-----cCCCCceEEEEchHHHHHHHhcC----ccccCCCEEEEeCCccC
Confidence 999999998775 3555555554221 11123457778999887666542 23678999999999996
Q ss_pred ccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEEeccc
Q psy16310 966 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE 1045 (1493)
Q Consensus 966 l~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1045 (1493)
..++......+.... .+...|+++||||+++.+.... . ....+..+..
T Consensus 106 -~~~~~~~~~~l~~~~----~~~~~~~l~~SAT~~~~~~~~~-------------~--------------~~~~i~~~~~ 153 (431)
T 2v6i_A 106 -DPASVAARGYIETRV----SMGDAGAIFMTATPPGTTEAFP-------------P--------------SNSPIIDEET 153 (431)
T ss_dssp -SHHHHHHHHHHHHHH----HTTSCEEEEEESSCTTCCCSSC-------------C--------------CSSCCEEEEC
T ss_pred -CccHHHHHHHHHHHh----hCCCCcEEEEeCCCCcchhhhc-------------C--------------CCCceeeccc
Confidence 322223333333322 1357899999999986432111 0 0011111100
Q ss_pred cccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhc
Q psy16310 1046 KIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125 (1493)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~ 1125 (1493)
.. + ..+...++.++...++++||||+++..++.++..|+..++.+..+||+ +|..+++.|++
T Consensus 154 ~~-------------~-~~~~~~~~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~ 215 (431)
T 2v6i_A 154 RI-------------P-DKAWNSGYEWITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKS 215 (431)
T ss_dssp CC-------------C-SSCCSSCCHHHHSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHH
T ss_pred cC-------------C-HHHHHHHHHHHHcCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcC
Confidence 00 0 011112234455667899999999999999999999999999999997 57889999999
Q ss_pred CCCCeEEeehhhhccccCCCccE-----------------EEEecCCCChhHHHHHHhccCCCCC-CCeEEEEe
Q psy16310 1126 QNNSILLATDVAARGLDIPGIEH-----------------VIHYHVPRTSEIYIHRSGRTARANN-EGLTLVLI 1181 (1493)
Q Consensus 1126 g~~~VLVaTdv~~~GiDip~v~~-----------------VI~~d~p~s~~~yiqr~GR~gR~g~-~G~~i~l~ 1181 (1493)
|+++|||||+++++|+|+| +.+ ||+++.|.+..+|+||+||+||.|. .|.++++.
T Consensus 216 g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 216 EKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp SCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred CCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 9999999999999999999 554 6789999999999999999999985 45555554
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=351.63 Aligned_cols=308 Identities=17% Similarity=0.171 Sum_probs=213.4
Q ss_pred CHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHH
Q psy16310 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEV 855 (1493)
Q Consensus 776 ~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 855 (1493)
....++++.++++ |..++ .... ...|++++++||||||||+ +++..+...
T Consensus 130 ~~d~l~~i~dl~~--p~~~~--p~ar-~l~rk~vlv~apTGSGKT~----~al~~l~~~--------------------- 179 (677)
T 3rc3_A 130 CKDDLRKISDLRI--PPNWY--PDAR-AMQRKIIFHSGPTNSGKTY----HAIQKYFSA--------------------- 179 (677)
T ss_dssp CHHHHHHHTBCCC--GGGGC--HHHH-TSCCEEEEEECCTTSSHHH----HHHHHHHHS---------------------
T ss_pred CHHHHHHHhhccC--hhhhC--HHHH-hcCCCEEEEEcCCCCCHHH----HHHHHHHhc---------------------
Confidence 4445555644443 43332 2222 2367899999999999998 444444321
Q ss_pred HHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcH
Q psy16310 856 LEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPG 935 (1493)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~ 935 (1493)
..++|++|||+||.|+++.+... ++++..++|+..... ..-....+++++|++
T Consensus 180 ---------------------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv--~TpGr~~~il~~T~e 232 (677)
T 3rc3_A 180 ---------------------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTV--QPNGKQASHVSCTVE 232 (677)
T ss_dssp ---------------------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECC--STTCCCCSEEEEEGG
T ss_pred ---------------------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEe--cCCCcccceeEecHh
Confidence 12599999999999999999886 478889998754300 000012456666665
Q ss_pred HHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcC
Q psy16310 936 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSK 1015 (1493)
Q Consensus 936 rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~ 1015 (1493)
.+ .....+++|||||||++++.++...+..++..+. ....+++++|||.+. +....... +
T Consensus 233 ~~-----------~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~----~~~i~il~~SAT~~~-i~~l~~~~-~--- 292 (677)
T 3rc3_A 233 MC-----------SVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC----AEEVHLCGEPAAIDL-VMELMYTT-G--- 292 (677)
T ss_dssp GC-----------CSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC----EEEEEEEECGGGHHH-HHHHHHHH-T---
T ss_pred Hh-----------hhcccCCEEEEecceecCCccchHHHHHHHHccC----ccceEEEeccchHHH-HHHHHHhc-C---
Confidence 43 1245689999999999999999999998888774 256899999999632 22111100 0
Q ss_pred cccccCCCchhHHHHhHhccCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHHHHHH
Q psy16310 1016 SKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQ 1095 (1493)
Q Consensus 1016 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~ 1095 (1493)
....+.... ....+ ...... . ..+.......||||+|+..++.++.
T Consensus 293 ---------------------~~~~v~~~~---r~~~l---~~~~~~---l----~~l~~~~~g~iIf~~s~~~ie~la~ 338 (677)
T 3rc3_A 293 ---------------------EEVEVRDYK---RLTPI---SVLDHA---L----ESLDNLRPGDCIVCFSKNDIYSVSR 338 (677)
T ss_dssp ---------------------CCEEEEECC---CSSCE---EECSSC---C----CSGGGCCTTEEEECSSHHHHHHHHH
T ss_pred ---------------------CceEEEEee---ecchH---HHHHHH---H----HHHHhcCCCCEEEEcCHHHHHHHHH
Confidence 000000000 00000 000000 0 0111224556899999999999999
Q ss_pred HHHhcCCCccccccCCCHHHHHHHHHHHhc--CCCCeEEeehhhhccccCCCccEEEEecC--------------CCChh
Q psy16310 1096 LLTMLKCSPLPLHASMNQRQRLKNLDRFRD--QNNSILLATDVAARGLDIPGIEHVIHYHV--------------PRTSE 1159 (1493)
Q Consensus 1096 ~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~--g~~~VLVaTdv~~~GiDip~v~~VI~~d~--------------p~s~~ 1159 (1493)
.|...++.+..+||+|++.+|..+++.|++ |.++|||||+++++|||+ +|++||++++ |.+..
T Consensus 339 ~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~ 417 (677)
T 3rc3_A 339 QIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTS 417 (677)
T ss_dssp HHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHH
T ss_pred HHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHH
Confidence 999999999999999999999999999999 899999999999999999 9999999999 77999
Q ss_pred HHHHHHhccCCCCCC---CeEEEEecCCCHHHHHHHHHhc
Q psy16310 1160 IYIHRSGRTARANNE---GLTLVLIESDEIPLYIKMFNSL 1196 (1493)
Q Consensus 1160 ~yiqr~GR~gR~g~~---G~~i~l~~~~e~~~~~~~~~~~ 1196 (1493)
+|+||+|||||.|.. |.|+++ .+.+...+.+++...
T Consensus 418 ~~~QR~GRAGR~g~~g~~G~v~~l-~~~d~~~~~~~~~~~ 456 (677)
T 3rc3_A 418 QALQIAGRAGRFSSRFKEGEVTTM-NHEDLSLLKEILKRP 456 (677)
T ss_dssp HHHHHHTTBTCTTSSCSSEEEEES-STTHHHHHHHHHHSC
T ss_pred HHHHHhcCCCCCCCCCCCEEEEEE-ecchHHHHHHHHhcC
Confidence 999999999999965 554444 555666666666543
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=336.39 Aligned_cols=269 Identities=18% Similarity=0.195 Sum_probs=187.8
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEccc
Q psy16310 189 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 268 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PT 268 (1493)
|+|++++||||||||++|++|+++.+.. .+.+++||+||
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~-----------------------------------------~g~~~lvl~Pt 40 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK-----------------------------------------KRLRTVILAPT 40 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH-----------------------------------------TTCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh-----------------------------------------CCCCEEEECcH
Confidence 6899999999999999999999976642 23579999999
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchh
Q psy16310 269 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRM 348 (1493)
Q Consensus 269 reLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~l 348 (1493)
++||.|+++.+. ++.+....|+... .-..+.-+.++|.+.+...+... . .+.++++|||||||++
T Consensus 41 ~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~-~---~~~~l~~vViDEaH~~ 105 (431)
T 2v6i_A 41 RVVASEMYEALR------GEPIRYMTPAVQS-----ERTGNEIVDFMCHSTFTMKLLQG-V---RVPNYNLYIMDEAHFL 105 (431)
T ss_dssp HHHHHHHHHHTT------TSCEEEC--------------CCCSEEEEEHHHHHHHHHHT-C---CCCCCSEEEEESTTCC
T ss_pred HHHHHHHHHHhC------CCeEEEEecCccc-----cCCCCceEEEEchHHHHHHHhcC-c---cccCCCEEEEeCCccC
Confidence 999999998774 3455555554321 11123467788999887666542 2 2558899999999987
Q ss_pred hhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccccccc
Q psy16310 349 IESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSK 428 (1493)
Q Consensus 349 l~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~~ 428 (1493)
+.++......+..... ...+|+++||||+++.+..+...
T Consensus 106 -~~~~~~~~~~l~~~~~--------------------------------~~~~~~l~~SAT~~~~~~~~~~~-------- 144 (431)
T 2v6i_A 106 -DPASVAARGYIETRVS--------------------------------MGDAGAIFMTATPPGTTEAFPPS-------- 144 (431)
T ss_dssp -SHHHHHHHHHHHHHHH--------------------------------TTSCEEEEEESSCTTCCCSSCCC--------
T ss_pred -CccHHHHHHHHHHHhh--------------------------------CCCCcEEEEeCCCCcchhhhcCC--------
Confidence 3333333333322210 23579999999998643221100
Q ss_pred cccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCccc
Q psy16310 429 KVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIV 508 (1493)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (1493)
......... ..+
T Consensus 145 -------------------~~~i~~~~~-----------------------------~~~-------------------- 156 (431)
T 2v6i_A 145 -------------------NSPIIDEET-----------------------------RIP-------------------- 156 (431)
T ss_dssp -------------------SSCCEEEEC-----------------------------CCC--------------------
T ss_pred -------------------CCceeeccc-----------------------------cCC--------------------
Confidence 000000000 000
Q ss_pred cccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHH
Q psy16310 509 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 588 (1493)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~ 588 (1493)
..+...+..++...++++||||+++..++.++..|...++.+..+||+ +|..+++
T Consensus 157 ---------------------~~~~~~~~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~ 211 (431)
T 2v6i_A 157 ---------------------DKAWNSGYEWITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYP 211 (431)
T ss_dssp ---------------------SSCCSSCCHHHHSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTT
T ss_pred ---------------------HHHHHHHHHHHHcCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHH
Confidence 000000112334456799999999999999999999999999999997 5778999
Q ss_pred HHhcCCCeEEEEechhhccCCCCCCcE-----------------EEEecCCCChHHHHHHHhccccCCCC-CeEEEEe
Q psy16310 589 RFRDQNNSILLATDVAARGLDIPGIEH-----------------VIHYHVPRTSEIYIHRSGRTARANNE-GLTVVLI 648 (1493)
Q Consensus 589 ~Fr~g~~~VLVaTdv~~rGlDip~v~~-----------------VI~yd~P~s~~~yiQR~GRagR~g~~-G~~i~l~ 648 (1493)
.|++|+.+|||||+++++|+|+| +.+ ||+|+.|.+..+|+||+||+||.|.. |.++++.
T Consensus 212 ~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 212 KCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred hhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 99999999999999999999999 654 68899999999999999999999854 5555554
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=341.84 Aligned_cols=342 Identities=18% Similarity=0.168 Sum_probs=218.6
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.|+|+|.++++ .+..++++++++|||+|||++|++++...
T Consensus 93 ~l~~~Q~~ai~-~i~~~~~~ll~~~TGsGKT~~~l~~i~~~--------------------------------------- 132 (472)
T 2fwr_A 93 SLRDYQEKALE-RWLVDKRGCIVLPTGSGKTHVAMAAINEL--------------------------------------- 132 (472)
T ss_dssp CBCHHHHHHHH-HHTTTTEEEEECCTTSCHHHHHHHHHHHH---------------------------------------
T ss_pred CcCHHHHHHHH-HHHhcCCEEEEeCCCCCHHHHHHHHHHHc---------------------------------------
Confidence 69999999998 45566789999999999999999987632
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeE-EEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK-VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~-v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~ 331 (1493)
+.++|||+||++|+.|+.+.|..+ ++. +..++|+... .++|+|+||+.|...+.. +
T Consensus 133 ------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~----~ 189 (472)
T 2fwr_A 133 ------STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK----L 189 (472)
T ss_dssp ------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH----H
T ss_pred ------CCCEEEEECCHHHHHHHHHHHHhC----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH----h
Confidence 235999999999999999999884 677 8888887642 469999999999776542 1
Q ss_pred cccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccc
Q psy16310 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 411 (1493)
Q Consensus 332 ~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~ 411 (1493)
..++++|||||||++...++.. ++..+ ...+++++|||+.
T Consensus 190 --~~~~~liIvDEaH~~~~~~~~~----~~~~~----------------------------------~~~~~l~lSATp~ 229 (472)
T 2fwr_A 190 --GNRFMLLIFDEVHHLPAESYVQ----IAQMS----------------------------------IAPFRLGLTATFE 229 (472)
T ss_dssp --TTTCSEEEEETGGGTTSTTTHH----HHHTC----------------------------------CCSEEEEEESCCC
T ss_pred --cCCCCEEEEECCcCCCChHHHH----HHHhc----------------------------------CCCeEEEEecCcc
Confidence 1258999999999998665532 33322 2357899999997
Q ss_pred hhhhhhhhhhccccccccccCCCchhhhHHhhhhccC--CcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCC
Q psy16310 412 HSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKS--PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPG 489 (1493)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (1493)
+.-.... .+..++.... .....+...+ ........+.+.........+.
T Consensus 230 ~~~~~~~--------------------~l~~~~~~~~~~~~~~~l~~~~--l~~~~~~~~~~~~~~~~~~~~~------- 280 (472)
T 2fwr_A 230 REDGRHE--------------------ILKEVVGGKVFELFPDSLAGKH--LAKYTIKRIFVPLAEDERVEYE------- 280 (472)
T ss_dssp CTTSGGG--------------------SHHHHTCCEEEECCHHHHTSCC--CCSEEECCEEECCCHHHHHHTT-------
T ss_pred CCCCHHH--------------------HHHHHhCCeEeecCHHHHhcCc--CCCeEEEEEEcCCCHHHHHHHH-------
Confidence 4211100 0000000000 0000000000 0000000000000000000000
Q ss_pred cchhhHHHhhhhccC------Ccccccccccc--------ccccccccccccccCchhhHHHHHHhhC-CCcEEEEecch
Q psy16310 490 RTLCEEIQDLLNIKS------PKIVDLTEKIG--------ITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSI 554 (1493)
Q Consensus 490 ~~~~~~~~~~~~~~~------~~~~~~~~~~~--------~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IIF~~s~ 554 (1493)
.....+........ ........... .........+.+....|...+..++... ++++||||+++
T Consensus 281 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~ 359 (472)
T 2fwr_A 281 -KREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHN 359 (472)
T ss_dssp -TTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCH
T ss_pred -HHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCH
Confidence 00000000000000 00000000000 0000001112344566777888887765 57999999999
Q ss_pred hhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhc
Q psy16310 555 SSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGR 634 (1493)
Q Consensus 555 ~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GR 634 (1493)
..++.++..|. +..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.|+..|+||+||
T Consensus 360 ~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR 434 (472)
T 2fwr_A 360 ELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGR 434 (472)
T ss_dssp HHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhh
Confidence 99999999873 6679999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCC-C--eEEEEecCCc
Q psy16310 635 TARANNE-G--LTVVLIESDE 652 (1493)
Q Consensus 635 agR~g~~-G--~~i~l~~~~e 652 (1493)
+||.|.. + .++.|++.+.
T Consensus 435 ~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 435 ILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp SBCCCTTTCCEEEEEEEECSC
T ss_pred ccCCCCCCceEEEEEEEeCCC
Confidence 9999843 2 4455666543
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-32 Score=342.63 Aligned_cols=272 Identities=18% Similarity=0.199 Sum_probs=194.7
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcc
Q psy16310 188 ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 267 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~P 267 (1493)
.+++++++||||||||+ ++++.+... ..++|++|
T Consensus 154 ~rk~vlv~apTGSGKT~----~al~~l~~~------------------------------------------~~gl~l~P 187 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTY----HAIQKYFSA------------------------------------------KSGVYCGP 187 (677)
T ss_dssp CCEEEEEECCTTSSHHH----HHHHHHHHS------------------------------------------SSEEEEES
T ss_pred CCCEEEEEcCCCCCHHH----HHHHHHHhc------------------------------------------CCeEEEeC
Confidence 67899999999999999 344444321 12599999
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCch
Q psy16310 268 TRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDR 347 (1493)
Q Consensus 268 TreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ 347 (1493)
||+||.|+++.+... ++.+..++|+..... ..-....+++++|++.+ ..+..+++|||||||+
T Consensus 188 tR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~-----------~l~~~v~lvVIDEaH~ 250 (677)
T 3rc3_A 188 LKLLAHEIFEKSNAA----GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMC-----------SVTTPYEVAVIDEIQM 250 (677)
T ss_dssp SHHHHHHHHHHHHHT----TCCEEEECSSCEECC--STTCCCCSEEEEEGGGC-----------CSSSCEEEEEECSGGG
T ss_pred HHHHHHHHHHHHHhc----CCcEEEEECCeeEEe--cCCCcccceeEecHhHh-----------hhcccCCEEEEeccee
Confidence 999999999999886 678888999864300 00001245666666543 1234679999999999
Q ss_pred hhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhcccccc
Q psy16310 348 MIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKS 427 (1493)
Q Consensus 348 ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~~~~ 427 (1493)
+++.++...+..++..+. ....+++++|||.+. +..+.....
T Consensus 251 l~d~~~g~~~~~~l~~l~--------------------------------~~~i~il~~SAT~~~-i~~l~~~~~----- 292 (677)
T 3rc3_A 251 IRDPARGWAWTRALLGLC--------------------------------AEEVHLCGEPAAIDL-VMELMYTTG----- 292 (677)
T ss_dssp GGCTTTHHHHHHHHHHCC--------------------------------EEEEEEEECGGGHHH-HHHHHHHHT-----
T ss_pred cCCccchHHHHHHHHccC--------------------------------ccceEEEeccchHHH-HHHHHHhcC-----
Confidence 999999998888887663 134689999999532 222111000
Q ss_pred ccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccCCcc
Q psy16310 428 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKI 507 (1493)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1493)
.. ..+. .. .. ..+.
T Consensus 293 ---------------------~~-~~v~----------~~-------~r--------------------------~~~l- 306 (677)
T 3rc3_A 293 ---------------------EE-VEVR----------DY-------KR--------------------------LTPI- 306 (677)
T ss_dssp ---------------------CC-EEEE----------EC-------CC--------------------------SSCE-
T ss_pred ---------------------Cc-eEEE----------Ee-------ee--------------------------cchH-
Confidence 00 0000 00 00 0000
Q ss_pred ccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHH
Q psy16310 508 VDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNL 587 (1493)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl 587 (1493)
... ...+ ..+.....+.||||+++.+++.++..|...++.+..+||+|++.+|..++
T Consensus 307 -~~~-----~~~l-----------------~~l~~~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~ 363 (677)
T 3rc3_A 307 -SVL-----DHAL-----------------ESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQA 363 (677)
T ss_dssp -EEC-----SSCC-----------------CSGGGCCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHH
T ss_pred -HHH-----HHHH-----------------HHHHhcCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHH
Confidence 000 0000 00111234669999999999999999999999999999999999999999
Q ss_pred HHHhc--CCCeEEEEechhhccCCCCCCcEEEEecC--------------CCChHHHHHHHhccccCCCC---CeEEEEe
Q psy16310 588 DRFRD--QNNSILLATDVAARGLDIPGIEHVIHYHV--------------PRTSEIYIHRSGRTARANNE---GLTVVLI 648 (1493)
Q Consensus 588 ~~Fr~--g~~~VLVaTdv~~rGlDip~v~~VI~yd~--------------P~s~~~yiQR~GRagR~g~~---G~~i~l~ 648 (1493)
+.|++ |.++|||||+++++|||+ +|++||+||+ |.+..+|+||+|||||.|.. |.|++++
T Consensus 364 ~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~ 442 (677)
T 3rc3_A 364 KKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMN 442 (677)
T ss_dssp HHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESS
T ss_pred HHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEe
Confidence 99999 999999999999999999 8999999999 88999999999999999964 7777765
Q ss_pred cC
Q psy16310 649 ES 650 (1493)
Q Consensus 649 ~~ 650 (1493)
..
T Consensus 443 ~~ 444 (677)
T 3rc3_A 443 HE 444 (677)
T ss_dssp TT
T ss_pred cc
Confidence 43
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-32 Score=346.04 Aligned_cols=326 Identities=17% Similarity=0.181 Sum_probs=188.2
Q ss_pred CCCcHHHHhhHHHhhc----cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 789 KTPTKIQSMVMPSALL----ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~----~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
..|+|+|.++++.++. +++++++++|||||||++++. ++..++......
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~-------------------------- 229 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNR-------------------------- 229 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCS--------------------------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhccccc--------------------------
Confidence 4799999999986654 356799999999999999654 444443321100
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHH-HHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHh
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQ-NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQL 943 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~-~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~ 943 (1493)
.....+.++|||+||++|+.|++ +.++.++ ..+..+.++ ......+|+|+||++|...+..
T Consensus 230 ------~~~~~~~~vlil~P~~~L~~Q~~~~~~~~~~----~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~ 291 (590)
T 3h1t_A 230 ------TGDYRKPRILFLADRNVLVDDPKDKTFTPFG----DARHKIEGG--------KVVKSREIYFAIYQSIASDERR 291 (590)
T ss_dssp ------SCSSSCCCEEEEEC-----------CCTTTC----SSEEECCC----------CCSSCSEEEEEGGGC------
T ss_pred ------ccccCCCeEEEEeCCHHHHHHHHHHHHHhcc----hhhhhhhcc--------CCCCCCcEEEEEhhhhcccccc
Confidence 01124568999999999999999 7666553 344444433 2335679999999999877642
Q ss_pred Cc-CccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCC
Q psy16310 944 GH-FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKG 1022 (1493)
Q Consensus 944 ~~-~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~ 1022 (1493)
.. ........+++||+||||++...+ ...+..++..+ ...++++||||+............+....
T Consensus 292 ~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~------~~~~~l~lTATP~~~~~~~~~~~f~~~~~------ 358 (590)
T 3h1t_A 292 PGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYF------EPAFQIGMTATPLREDNRDTYRYFGNPIY------ 358 (590)
T ss_dssp CCGGGGSCTTSCSEEEESCCC----------CHHHHHHS------TTSEEEEEESSCSCTTTHHHHHHSCSCSE------
T ss_pred ccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhC------CcceEEEeccccccccchhHHHHcCCceE------
Confidence 21 111123468999999999987643 24556777766 34789999999885433222111111000
Q ss_pred CchhHHHHhHhccCCCcEEeccccccc-------------cccceeeEEEecc-------cchhhH----HHHHHHh--C
Q psy16310 1023 DPSIKRLQDLLNIKSPKIVDLTEKIGI-------------TKTLTESKILCKH-------DEKDSY----LYYFILQ--H 1076 (1493)
Q Consensus 1023 ~~~~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-------~~k~~~----l~~~l~~--~ 1076 (1493)
...+........+.+.....+...... ...+......... ..+... +..++.. .
T Consensus 359 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~ 438 (590)
T 3h1t_A 359 TYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDR 438 (590)
T ss_dssp EECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCT
T ss_pred ecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCC
Confidence 001111111111112221111110000 0000000000000 011112 2222222 2
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCC--------ccccccCCCHHHHHHHHHHHhcCCCC---eEEeehhhhccccCCC
Q psy16310 1077 PGRTLVFCNSISSVKRLTQLLTMLKCS--------PLPLHASMNQRQRLKNLDRFRDQNNS---ILLATDVAARGLDIPG 1145 (1493)
Q Consensus 1077 ~~~~IVF~~s~~~~~~l~~~L~~~~~~--------~~~lhg~m~~~~R~~~~~~F~~g~~~---VLVaTdv~~~GiDip~ 1145 (1493)
.+++||||+++.+|+.++..|...+.. +..+||++++ +|..++++|++|+.. |||||+++++|+|+|+
T Consensus 439 ~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~ 517 (590)
T 3h1t_A 439 FAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPT 517 (590)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTT
T ss_pred CccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchh
Confidence 579999999999999999999876432 5678999864 799999999998876 8899999999999999
Q ss_pred ccEEEEecCCCChhHHHHHHhccCCCCC
Q psy16310 1146 IEHVIHYHVPRTSEIYIHRSGRTARANN 1173 (1493)
Q Consensus 1146 v~~VI~~d~p~s~~~yiqr~GR~gR~g~ 1173 (1493)
+++||++++|.+...|+||+||+||.+.
T Consensus 518 v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 518 CKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp EEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred eeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 9999999999999999999999999875
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-31 Score=295.69 Aligned_cols=202 Identities=34% Similarity=0.564 Sum_probs=177.2
Q ss_pred hhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCccc
Q psy16310 764 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 843 (1493)
Q Consensus 764 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~ 843 (1493)
+.++.+|.++++++.++++|.+.||..|+|+|.++||. +..|+|++++||||||||++|++|++..+.....
T Consensus 25 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~------- 96 (242)
T 3fe2_A 25 PKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPV-ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF------- 96 (242)
T ss_dssp CCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHH-HHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC-------
T ss_pred CCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc-------
Confidence 34567899999999999999999999999999999995 5577999999999999999999999988854211
Q ss_pred CCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHh
Q psy16310 844 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 923 (1493)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l 923 (1493)
.....++++|||+||++|+.|+++.++.++...++++..++||.....+...+
T Consensus 97 ---------------------------~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 149 (242)
T 3fe2_A 97 ---------------------------LERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 149 (242)
T ss_dssp ---------------------------CCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred ---------------------------cccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHh
Confidence 01234668999999999999999999999888899999999999999888888
Q ss_pred cCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 924 ~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..+++|+|+||++|.+++..+.. .+.++++|||||||+|++++|...+..++..+ +..+|+++||||+++.+
T Consensus 150 ~~~~~I~v~Tp~~l~~~l~~~~~---~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~-----~~~~q~~~~SAT~~~~~ 221 (242)
T 3fe2_A 150 ERGVEICIATPGRLIDFLECGKT---NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDRQTLMWSATWPKEV 221 (242)
T ss_dssp HHCCSEEEECHHHHHHHHHHTSC---CCTTCCEEEETTHHHHHHTTCHHHHHHHHTTS-----CSSCEEEEEESCCCHHH
T ss_pred cCCCCEEEECHHHHHHHHHcCCC---CcccccEEEEeCHHHHhhhCcHHHHHHHHHhC-----CccceEEEEEeecCHHH
Confidence 88899999999999999987654 46688999999999999999999999998877 36789999999999888
Q ss_pred HhHHh
Q psy16310 1004 KNSLN 1008 (1493)
Q Consensus 1004 ~~~~~ 1008 (1493)
...+.
T Consensus 222 ~~~~~ 226 (242)
T 3fe2_A 222 RQLAE 226 (242)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-31 Score=306.40 Aligned_cols=204 Identities=26% Similarity=0.424 Sum_probs=168.4
Q ss_pred cCCCcchhhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhcc-CCcEEEEccCCCcchhHhhHHHHHHHhhh
Q psy16310 756 DTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNK 834 (1493)
Q Consensus 756 ~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~dvlv~apTGsGKTla~~lpil~~l~~~ 834 (1493)
...+++.+.....+|++++|++.++++|..+||..|||+|.++||.++.+ ++|++++||||||||++|++|+++++..
T Consensus 80 ~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~- 158 (300)
T 3fmo_B 80 LQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP- 158 (300)
T ss_dssp ECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT-
T ss_pred ccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc-
Confidence 33344445566788999999999999999999999999999999965543 4899999999999999999999987732
Q ss_pred cCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcC
Q psy16310 835 LENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGG 913 (1493)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg 913 (1493)
...++++|||+|||+||.|+++.++.++.+. ++.+..++||
T Consensus 159 --------------------------------------~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~ 200 (300)
T 3fmo_B 159 --------------------------------------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG 200 (300)
T ss_dssp --------------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTT
T ss_pred --------------------------------------cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCC
Confidence 2345679999999999999999999998765 6888889888
Q ss_pred CCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhcc-CCChhHHHHHHHHhcccCCCCCceE
Q psy16310 914 MSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQT 992 (1493)
Q Consensus 914 ~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~-~~~~~~l~~il~~l~~~~~~~~~q~ 992 (1493)
....... ..+++|+|||||+|++++.+.. ...+.++++|||||||+|++ .+|...+..++..+ +..+|+
T Consensus 201 ~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~--~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~-----~~~~q~ 270 (300)
T 3fmo_B 201 NKLERGQ---KISEQIVIGTPGTVLDWCSKLK--FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML-----PRNCQM 270 (300)
T ss_dssp CCCCTTC---CCCCSEEEECHHHHHHHHTTTC--CCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTS-----CTTCEE
T ss_pred ccHhhhh---cCCCCEEEECHHHHHHHHHhcC--CCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhC-----CCCCEE
Confidence 7643322 4567999999999999996532 13467899999999999998 68888888887766 467899
Q ss_pred EEEecccccchHhHHh
Q psy16310 993 FVFSATLTHSLKNSLN 1008 (1493)
Q Consensus 993 ll~SATl~~~~~~~~~ 1008 (1493)
++||||++..+..++.
T Consensus 271 i~~SAT~~~~v~~~a~ 286 (300)
T 3fmo_B 271 LLFSATFEDSVWKFAQ 286 (300)
T ss_dssp EEEESCCCHHHHHHHH
T ss_pred EEEeccCCHHHHHHHH
Confidence 9999999988877654
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=298.45 Aligned_cols=152 Identities=21% Similarity=0.211 Sum_probs=122.6
Q ss_pred EEEecccchhhHHHHHHHh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEe
Q psy16310 1057 KILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 1133 (1493)
Q Consensus 1057 ~~~~~~~~k~~~l~~~l~~---~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVa 1133 (1493)
.+.....+|...+...+.. .+.++||||+|+..++.|+..|...|+.+..+||++.+++|..+...|+.| .|+||
T Consensus 451 ~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVA 528 (822)
T 3jux_A 451 LVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIA 528 (822)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEE
T ss_pred EEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEE
Confidence 4556667788888877764 367999999999999999999999999999999996666666666666655 69999
Q ss_pred ehhhhccccCC--------CccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHH-------HHHHHHHhccc
Q psy16310 1134 TDVAARGLDIP--------GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP-------LYIKMFNSLEK 1198 (1493)
Q Consensus 1134 Tdv~~~GiDip--------~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~-------~~~~~~~~~~~ 1198 (1493)
|++++||+||+ +..+||+|++|.+...|+||+|||||+|.+|.+++|++..|.. .+..++..++.
T Consensus 529 TdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~ 608 (822)
T 3jux_A 529 TNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILKI 608 (822)
T ss_dssp ETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSC
T ss_pred cchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcCC
Confidence 99999999998 6679999999999999999999999999999999999988832 34445555443
Q ss_pred cCCCCCCCCChHHHH
Q psy16310 1199 KVDLPDFPIDESVLS 1213 (1493)
Q Consensus 1199 ~~~~~~~p~~~~~~~ 1213 (1493)
. +..|+....+.
T Consensus 609 ~---~~~~i~~~~v~ 620 (822)
T 3jux_A 609 E---EGQPIQHPMLS 620 (822)
T ss_dssp C---SSSCBCCHHHH
T ss_pred C---CCceeccHHHH
Confidence 2 23466655433
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=289.72 Aligned_cols=202 Identities=34% Similarity=0.564 Sum_probs=175.5
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCC
Q psy16310 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 227 (1493)
Q Consensus 148 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 227 (1493)
.+..+|.++++++.+++.+.+.||..|+++|.++++ .+..|+|++++||||||||++|++|++.++......
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~------- 97 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWP-VALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFL------- 97 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHH-HHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCC-------
T ss_pred CccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcccc-------
Confidence 456789999999999999999999999999999998 455789999999999999999999999888642110
Q ss_pred CccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc
Q psy16310 228 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 307 (1493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~ 307 (1493)
....++++|||+||++||.|+++.+..+....++++..++|+.....+...+.
T Consensus 98 ---------------------------~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 150 (242)
T 3fe2_A 98 ---------------------------ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE 150 (242)
T ss_dssp ---------------------------CTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred ---------------------------ccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc
Confidence 11345679999999999999999999998888899999999999999888888
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
.+++|+|+||++|.+++...... +.++++|||||||++++++|...+..++..+
T Consensus 151 ~~~~I~v~Tp~~l~~~l~~~~~~---~~~~~~lViDEah~l~~~~~~~~~~~i~~~~----------------------- 204 (242)
T 3fe2_A 151 RGVEICIATPGRLIDFLECGKTN---LRRTTYLVLDEADRMLDMGFEPQIRKIVDQI----------------------- 204 (242)
T ss_dssp HCCSEEEECHHHHHHHHHHTSCC---CTTCCEEEETTHHHHHHTTCHHHHHHHHTTS-----------------------
T ss_pred CCCCEEEECHHHHHHHHHcCCCC---cccccEEEEeCHHHHhhhCcHHHHHHHHHhC-----------------------
Confidence 88999999999999999876543 5588999999999999999999999998765
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
++.+|+++||||+|+.+..++..
T Consensus 205 ----------~~~~q~~~~SAT~~~~~~~~~~~ 227 (242)
T 3fe2_A 205 ----------RPDRQTLMWSATWPKEVRQLAED 227 (242)
T ss_dssp ----------CSSCEEEEEESCCCHHHHHHHHH
T ss_pred ----------CccceEEEEEeecCHHHHHHHHH
Confidence 34579999999999988776643
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=300.05 Aligned_cols=203 Identities=26% Similarity=0.429 Sum_probs=165.5
Q ss_pred CCCcccccccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcc-CCcEEEEccCCCchhHHHHHHHHHHHHhhcc
Q psy16310 141 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNKLE 219 (1493)
Q Consensus 141 ~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~-~~dviv~apTGSGKTl~~~lpil~~l~~~~~ 219 (1493)
.+.+.+.....+|.+++|++.++++|..+||..||++|.++||.++.+ ++|+|++||||||||++|++|+++++..
T Consensus 82 ~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~--- 158 (300)
T 3fmo_B 82 RDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP--- 158 (300)
T ss_dssp SSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT---
T ss_pred CCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc---
Confidence 333444556788999999999999999999999999999999955533 3899999999999999999999987632
Q ss_pred CCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCC
Q psy16310 220 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMS 298 (1493)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~ 298 (1493)
...++++|||+|||+||.|+++.+..++... ++.+..++|+..
T Consensus 159 ------------------------------------~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~ 202 (300)
T 3fmo_B 159 ------------------------------------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK 202 (300)
T ss_dssp ------------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCC
T ss_pred ------------------------------------cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCcc
Confidence 1345679999999999999999999998764 688888988866
Q ss_pred HHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhh-cCChhhHHHHHHhhccccCCCcccccc
Q psy16310 299 TEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTMI 377 (1493)
Q Consensus 299 ~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-~~~~~~l~~il~~l~~~~~~~~~~~~~ 377 (1493)
.... ...+++|+||||++|++++.+.. ...+.++++|||||||+|++ .+|...+..|+..+
T Consensus 203 ~~~~---~~~~~~IlV~TP~~l~~~l~~~~--~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~------------- 264 (300)
T 3fmo_B 203 LERG---QKISEQIVIGTPGTVLDWCSKLK--FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML------------- 264 (300)
T ss_dssp CCTT---CCCCCSEEEECHHHHHHHHTTTC--CCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTS-------------
T ss_pred Hhhh---hcCCCCEEEECHHHHHHHHHhcC--CCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhC-------------
Confidence 4332 14567999999999999996522 12356899999999999998 68888888887654
Q ss_pred ccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 378 ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
+..+|+++||||+++.+..++..
T Consensus 265 --------------------~~~~q~i~~SAT~~~~v~~~a~~ 287 (300)
T 3fmo_B 265 --------------------PRNCQMLLFSATFEDSVWKFAQK 287 (300)
T ss_dssp --------------------CTTCEEEEEESCCCHHHHHHHHH
T ss_pred --------------------CCCCEEEEEeccCCHHHHHHHHH
Confidence 34579999999999988776653
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=343.67 Aligned_cols=364 Identities=16% Similarity=0.194 Sum_probs=230.5
Q ss_pred CCCcHHHHhhHHHhhcc-CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcch
Q psy16310 789 KTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 867 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~-~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1493)
..|+|+|..++..++.. +.++|++++||+|||++++..+...+..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~---------------------------------- 197 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS---------------------------------- 197 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT----------------------------------
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh----------------------------------
Confidence 47999999999866643 4588999999999999988777655422
Q ss_pred hhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH--HhcCCCcEEEECcHHHHHHHHhCc
Q psy16310 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR--ILNKCPHILVATPGRLWEFIQLGH 945 (1493)
Q Consensus 868 ~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~--~l~~~~~IlV~TP~rl~~~l~~~~ 945 (1493)
....++|||||+ .|+.|+...+.+.+ ++++..+.|+........ ......+|+|+|++.+..... .
T Consensus 198 ------g~~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~--~ 265 (968)
T 3dmq_A 198 ------GAAERVLIIVPE-TLQHQWLVEMLRRF---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQ--R 265 (968)
T ss_dssp ------SSCCCEEEECCT-TTHHHHHHHHHHHS---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTT--T
T ss_pred ------CCCCeEEEEeCH-HHHHHHHHHHHHHh---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHH--H
Confidence 223369999999 99999999997654 466655554322211111 111246899999998753210 0
Q ss_pred CccccccceeEEEecccchhccCCChh-HHHHHHHHhcccCCCCCceEEEEeccccc-ch---HhHHhhhccCcCcc---
Q psy16310 946 FHLTELYKINYLVIDETDRMIESGHFP-ELKNILDRVTMTETSQPRQTFVFSATLTH-SL---KNSLNLKKGQSKSK--- 1017 (1493)
Q Consensus 946 ~~~~~l~~l~~lVlDEah~ll~~~~~~-~l~~il~~l~~~~~~~~~q~ll~SATl~~-~~---~~~~~~~~~~~~~~--- 1017 (1493)
.......++++|||||||++...+... .....+..+. .....++++|||+.. .. ...+..........
T Consensus 266 ~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~----~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~ 341 (968)
T 3dmq_A 266 LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA----EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQ 341 (968)
T ss_dssp THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH----TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHH
T ss_pred HHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh----hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHH
Confidence 000113368999999999996554321 2233333332 133568999999853 11 11111000000000
Q ss_pred ---------------------------------cccC-----------------CCchh-HHHHhHhccC--CCcEEecc
Q psy16310 1018 ---------------------------------KVSK-----------------GDPSI-KRLQDLLNIK--SPKIVDLT 1044 (1493)
Q Consensus 1018 ---------------------------------~~~~-----------------~~~~~-~~l~~~~~~~--~~~~~~~~ 1044 (1493)
.... ..... ..+...+... ....+...
T Consensus 342 f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~ 421 (968)
T 3dmq_A 342 FVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNT 421 (968)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCC
T ss_pred HHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhh
Confidence 0000 00000 0000000000 00000000
Q ss_pred ccc--cc-ccccee---------------------------------------------eEEEecccchhhHHHHHHHhC
Q psy16310 1045 EKI--GI-TKTLTE---------------------------------------------SKILCKHDEKDSYLYYFILQH 1076 (1493)
Q Consensus 1045 ~~~--~~-~~~~~~---------------------------------------------~~~~~~~~~k~~~l~~~l~~~ 1076 (1493)
... .. ...... ....+....|...+..++...
T Consensus 422 r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~ 501 (968)
T 3dmq_A 422 RNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSH 501 (968)
T ss_dssp TTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHT
T ss_pred hhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhC
Confidence 000 00 000000 001233445677777777654
Q ss_pred -CCcEEEEecchhhHHHHHHHHHh-cCCCccccccCCCHHHHHHHHHHHhcCC--CCeEEeehhhhccccCCCccEEEEe
Q psy16310 1077 -PGRTLVFCNSISSVKRLTQLLTM-LKCSPLPLHASMNQRQRLKNLDRFRDQN--NSILLATDVAARGLDIPGIEHVIHY 1152 (1493)
Q Consensus 1077 -~~~~IVF~~s~~~~~~l~~~L~~-~~~~~~~lhg~m~~~~R~~~~~~F~~g~--~~VLVaTdv~~~GiDip~v~~VI~~ 1152 (1493)
++++||||+++..++.++..|.. .|+.+..+||+|++.+|..+++.|++|+ ++|||||+++++|+|+|++++||+|
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~ 581 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMF 581 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECS
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEe
Confidence 77999999999999999999995 6999999999999999999999999998 9999999999999999999999999
Q ss_pred cCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCC
Q psy16310 1153 HVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDL 1202 (1493)
Q Consensus 1153 d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~ 1202 (1493)
|+|.++..|+||+||+||.|+.|.+++++...+...-..+++.+..+..+
T Consensus 582 d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~ 631 (968)
T 3dmq_A 582 DLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDA 631 (968)
T ss_dssp SCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCC
T ss_pred cCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCc
Confidence 99999999999999999999999776665443333344555555444443
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=330.30 Aligned_cols=345 Identities=17% Similarity=0.165 Sum_probs=182.0
Q ss_pred CChHHHHhhhhhhhc----cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 173 TPTKIQSMVMPSALL----ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~----~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
.|+++|.++++.++. +++++++++|||||||++++. ++..+.......
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~--------------------------- 229 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNR--------------------------- 229 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCS---------------------------
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhccccc---------------------------
Confidence 699999999986554 356799999999999999654 444443311000
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHH-HHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQ-NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~-~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~ 327 (1493)
.....+.++|||+||++|+.|+. +.+..++ ..+..+.++. ...+.+|+|+||++|...+...
T Consensus 230 -----~~~~~~~~vlil~P~~~L~~Q~~~~~~~~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~ 292 (590)
T 3h1t_A 230 -----TGDYRKPRILFLADRNVLVDDPKDKTFTPFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRP 292 (590)
T ss_dssp -----SCSSSCCCEEEEEC-----------CCTTTC----SSEEECCC----------CCSSCSEEEEEGGGC------C
T ss_pred -----ccccCCCeEEEEeCCHHHHHHHHHHHHHhcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccc
Confidence 00124567999999999999998 7776553 3333343332 2356799999999998876422
Q ss_pred Cc-cccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEE
Q psy16310 328 HF-HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVF 406 (1493)
Q Consensus 328 ~~-~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~ 406 (1493)
.. .......+++|||||||++...+ ...+..++..+. ..++++|
T Consensus 293 ~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~----------------------------------~~~~l~l 337 (590)
T 3h1t_A 293 GLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFE----------------------------------PAFQIGM 337 (590)
T ss_dssp CGGGGSCTTSCSEEEESCCC----------CHHHHHHST----------------------------------TSEEEEE
T ss_pred cccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCC----------------------------------cceEEEe
Confidence 11 11123468999999999986532 234455555442 2479999
Q ss_pred eeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhc
Q psy16310 407 SATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQ 486 (1493)
Q Consensus 407 SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (1493)
|||+............+. ......+.+.+.. +....+....+....... . +..
T Consensus 338 TATP~~~~~~~~~~~f~~---------~~~~~~~~~~i~~------------~~l~~~~~~~~~~~~~~~-~---~~~-- 390 (590)
T 3h1t_A 338 TATPLREDNRDTYRYFGN---------PIYTYSLRQGIDD------------GFLAPYRVHRVISEVDAA-G---WRP-- 390 (590)
T ss_dssp ESSCSCTTTHHHHHHSCS---------CSEEECHHHHHHH------------TSSCCEEEEEEEETTCC-----------
T ss_pred ccccccccchhHHHHcCC---------ceEecCHHHHhhC------------CccCCcEEEEeeeeeecc-c---ccc--
Confidence 999874322111000000 0000000000000 000000000000000000 0 000
Q ss_pred CCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhH----HHHHHhh--CCCcEEEEecchhhHHHH
Q psy16310 487 HPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSY----LYYFILQ--HPGRTLVFCNSISSVKRL 560 (1493)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~----l~~~l~~--~~~~~IIF~~s~~~a~~L 560 (1493)
............ .... ..............+... +..++.. ..+++||||+++..|+.+
T Consensus 391 --~~~~~~~~~~~~----------~~~~---~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l 455 (590)
T 3h1t_A 391 --SKGDVDRFGREI----------PDGE---YQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEM 455 (590)
T ss_dssp ---------------------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHH
T ss_pred --cccccccccccc----------cccc---CCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHH
Confidence 000000000000 0000 000000000000111122 2233332 247999999999999999
Q ss_pred HHHHHhcCCC--------ccccccCCCHHHHHHHHHHHhcCCCe---EEEEechhhccCCCCCCcEEEEecCCCChHHHH
Q psy16310 561 TQLLTMLKCS--------PLPLHASMNQRQRLKNLDRFRDQNNS---ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYI 629 (1493)
Q Consensus 561 ~~~L~~~~~~--------~~~lhg~~~~~~R~~vl~~Fr~g~~~---VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yi 629 (1493)
+..|...+.. +..+||+++. +|..+++.|++|+.. |||||+++++|+|+|+|++||+|++|.|+..|+
T Consensus 456 ~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~ 534 (590)
T 3h1t_A 456 RRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFK 534 (590)
T ss_dssp HHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHH
T ss_pred HHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHH
Confidence 9999776432 5678998764 799999999998876 899999999999999999999999999999999
Q ss_pred HHHhccccCCC
Q psy16310 630 HRSGRTARANN 640 (1493)
Q Consensus 630 QR~GRagR~g~ 640 (1493)
||+||+||.+.
T Consensus 535 Q~iGR~~R~~~ 545 (590)
T 3h1t_A 535 QIVGRGTRLRE 545 (590)
T ss_dssp HHHTTSCCCBG
T ss_pred HHHhhhcccCc
Confidence 99999999875
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=285.13 Aligned_cols=199 Identities=37% Similarity=0.594 Sum_probs=174.0
Q ss_pred hhhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcc
Q psy16310 763 MFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 842 (1493)
Q Consensus 763 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~ 842 (1493)
......+|+++++++.++++|..+||..|+|+|.++|+. +..|+|++++||||||||++|++|+++.+...
T Consensus 38 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-------- 108 (249)
T 3ber_A 38 EEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPL-ALQGRDIIGLAETGSGKTGAFALPILNALLET-------- 108 (249)
T ss_dssp HHHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--------
T ss_pred cccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC--------
Confidence 445567899999999999999999999999999999985 55779999999999999999999999887542
Q ss_pred cCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH
Q psy16310 843 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 922 (1493)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~ 922 (1493)
..+.++|||+||++|+.|+++.++.++...++++..++||.....+...
T Consensus 109 -------------------------------~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 157 (249)
T 3ber_A 109 -------------------------------PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA 157 (249)
T ss_dssp -------------------------------CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHH
T ss_pred -------------------------------CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHH
Confidence 2345799999999999999999999988888999999999998888888
Q ss_pred hcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 923 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 923 l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
+..+++|+|+||++|.+++..... ..+.++++||+||||++++++|...+..++..+ +..+|+++||||++..
T Consensus 158 ~~~~~~I~v~Tp~~l~~~l~~~~~--~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~-----~~~~~~l~~SAT~~~~ 230 (249)
T 3ber_A 158 LAKKPHIIIATPGRLIDHLENTKG--FNLRALKYLVMDEADRILNMDFETEVDKILKVI-----PRDRKTFLFSATMTKK 230 (249)
T ss_dssp HHTCCSEEEECHHHHHHHHHHSTT--CCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSS-----CSSSEEEEEESSCCHH
T ss_pred hcCCCCEEEECHHHHHHHHHcCCC--cCccccCEEEEcChhhhhccChHHHHHHHHHhC-----CCCCeEEEEeccCCHH
Confidence 888899999999999999876321 236678999999999999999999999998876 3578999999999988
Q ss_pred hHhHHh
Q psy16310 1003 LKNSLN 1008 (1493)
Q Consensus 1003 ~~~~~~ 1008 (1493)
+...+.
T Consensus 231 v~~~~~ 236 (249)
T 3ber_A 231 VQKLQR 236 (249)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776553
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-30 Score=284.48 Aligned_cols=203 Identities=31% Similarity=0.479 Sum_probs=166.3
Q ss_pred hhhhcccccc-CCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCc
Q psy16310 763 MFVQMAEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 841 (1493)
Q Consensus 763 ~~~~~~~f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~ 841 (1493)
.+.+..+|.+ +++++.++++|.+.||.+|||+|.++|+. +..|+|++++||||||||++|++|++..+.....
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~----- 87 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPI-ILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPI----- 87 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------
T ss_pred CCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCCChHHHHHHHHHHHHHHhccc-----
Confidence 3445667888 89999999999999999999999999985 5578999999999999999999999988743210
Q ss_pred ccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH
Q psy16310 842 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 921 (1493)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~ 921 (1493)
......++++|||+||++||.|+++.++.+. ..++++..++||.....+..
T Consensus 88 ----------------------------~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 138 (228)
T 3iuy_A 88 ----------------------------SREQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIE 138 (228)
T ss_dssp ---------------------------------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHH
T ss_pred ----------------------------hhhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHH
Confidence 0112356789999999999999999999986 56789999999998888877
Q ss_pred HhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEeccccc
Q psy16310 922 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001 (1493)
Q Consensus 922 ~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~ 1001 (1493)
.+..+++|+|+||++|.+++..+.. .+.++++||+||||++++++|...+..++..+ +..+|+++||||+++
T Consensus 139 ~~~~~~~iiv~Tp~~l~~~~~~~~~---~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~-----~~~~~~l~~SAT~~~ 210 (228)
T 3iuy_A 139 DISKGVDIIIATPGRLNDLQMNNSV---NLRSITYLVIDEADKMLDMEFEPQIRKILLDV-----RPDRQTVMTSATWPD 210 (228)
T ss_dssp HHHSCCSEEEECHHHHHHHHHTTCC---CCTTCCEEEECCHHHHHHTTCHHHHHHHHHHS-----CSSCEEEEEESCCCH
T ss_pred HhcCCCCEEEECHHHHHHHHHcCCc---CcccceEEEEECHHHHhccchHHHHHHHHHhC-----CcCCeEEEEEeeCCH
Confidence 8888899999999999998876553 36678999999999999999999999999887 367899999999998
Q ss_pred chHhHHh
Q psy16310 1002 SLKNSLN 1008 (1493)
Q Consensus 1002 ~~~~~~~ 1008 (1493)
.+...+.
T Consensus 211 ~~~~~~~ 217 (228)
T 3iuy_A 211 TVRQLAL 217 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777653
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=286.37 Aligned_cols=198 Identities=34% Similarity=0.457 Sum_probs=168.7
Q ss_pred cccccCC--CCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCC
Q psy16310 768 AEWVKFN--IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 845 (1493)
Q Consensus 768 ~~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 845 (1493)
..|++++ +++.++++|..+||..|+|+|.++++.++ .++|++++||||||||++|++|+++.+.....
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~--------- 121 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLL-EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF--------- 121 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHH-HTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC---------
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCCchHHHHHHHHHHHHhccc---------
Confidence 3577777 99999999999999999999999999554 67899999999999999999999988754211
Q ss_pred cchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcC
Q psy16310 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925 (1493)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~ 925 (1493)
....+.++|||+||++||.|+++.++.++...++.+..++||.....+...+..
T Consensus 122 --------------------------~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 175 (262)
T 3ly5_A 122 --------------------------MPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN 175 (262)
T ss_dssp --------------------------CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH
T ss_pred --------------------------cccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC
Confidence 112356799999999999999999999998899999999999998888887777
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHh
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
+++|+|+|||++.+++..... ..+.++++|||||||+|++++|...+..++..+ +..+|+++||||+++.+..
T Consensus 176 ~~~Iiv~Tp~~l~~~~~~~~~--~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~-----~~~~q~l~~SAT~~~~v~~ 248 (262)
T 3ly5_A 176 GINIIVATPGRLLDHMQNTPG--FMYKNLQCLVIDEADRILDVGFEEELKQIIKLL-----PTRRQTMLFSATQTRKVED 248 (262)
T ss_dssp CCSEEEECHHHHHHHHHHCTT--CCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHS-----CSSSEEEEECSSCCHHHHH
T ss_pred CCCEEEEcHHHHHHHHHccCC--cccccCCEEEEcChHHHhhhhHHHHHHHHHHhC-----CCCCeEEEEEecCCHHHHH
Confidence 899999999999998876532 236688999999999999999999999999887 3568999999999988877
Q ss_pred HHh
Q psy16310 1006 SLN 1008 (1493)
Q Consensus 1006 ~~~ 1008 (1493)
...
T Consensus 249 ~~~ 251 (262)
T 3ly5_A 249 LAR 251 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-29 Score=273.09 Aligned_cols=193 Identities=27% Similarity=0.540 Sum_probs=169.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
.+|++++|++.++++|.+.||..|+|+|.++++. +..++|+++++|||||||++|++|++..+..
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-------------- 67 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPI-ALSGRDILARAKNGTGKSGAYLIPLLERLDL-------------- 67 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHH-HHTTCCEEEECCSSSTTHHHHHHHHHHHCCT--------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HccCCCEEEECCCCCchHHHHHHHHHHHhcc--------------
Confidence 3699999999999999999999999999999985 5577999999999999999999999987632
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
...+.++||++||++|+.|+++.++.++... ++.+..++||.....+...+..+
T Consensus 68 -------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 122 (206)
T 1vec_A 68 -------------------------KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 122 (206)
T ss_dssp -------------------------TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSC
T ss_pred -------------------------cCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCC
Confidence 1344679999999999999999999998777 78999999999988888888888
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|+|+||++|.+.+..+.. .+.++++||+||||++.+.+|...+..++..+ +...|+++||||++..+...
T Consensus 123 ~~i~v~T~~~l~~~~~~~~~---~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~-----~~~~~~l~~SAT~~~~~~~~ 194 (206)
T 1vec_A 123 VHVVIATPGRILDLIKKGVA---KVDHVQMIVLDEADKLLSQDFVQIMEDIILTL-----PKNRQILLYSATFPLSVQKF 194 (206)
T ss_dssp CSEEEECHHHHHHHHHTTCS---CCTTCCEEEEETHHHHTSTTTHHHHHHHHHHS-----CTTCEEEEEESCCCHHHHHH
T ss_pred CCEEEeCHHHHHHHHHcCCc---CcccCCEEEEEChHHhHhhCcHHHHHHHHHhC-----CccceEEEEEeeCCHHHHHH
Confidence 99999999999999986553 35678999999999999999999999998877 35789999999999887766
Q ss_pred Hh
Q psy16310 1007 LN 1008 (1493)
Q Consensus 1007 ~~ 1008 (1493)
+.
T Consensus 195 ~~ 196 (206)
T 1vec_A 195 MN 196 (206)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=279.12 Aligned_cols=193 Identities=36% Similarity=0.609 Sum_probs=167.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
.+|+++++++.++++|.+.||..|+|+|.++++. +..++|++++||||||||++|++|++..+..
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~-------------- 68 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPG-ALRGESMVGQSQTGTGKTHAYLLPIMEKIKP-------------- 68 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHH-HHHTCCEEEECCSSHHHHHHHHHHHHHHCCT--------------
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCCChHHHHHHHHHHHHHHh--------------
Confidence 5699999999999999999999999999999985 4577899999999999999999999987632
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC----CcEEEEEEcCCCHHHHHHHh
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT----PVKVACVVGGMSTEKQLRIL 923 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~----~~~v~~~~gg~~~~~~~~~l 923 (1493)
...+.++|||+||++|+.|+++.++.++... ++.+..++||.....+...+
T Consensus 69 -------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 123 (219)
T 1q0u_A 69 -------------------------ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL 123 (219)
T ss_dssp -------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCC
T ss_pred -------------------------CcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHc
Confidence 1234679999999999999999999998776 68899999998776665555
Q ss_pred cCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 924 ~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..+++|+|+||++|.+++..+.. .+.++++||+||||++.+++|...+..++..+ +...|+++||||++..+
T Consensus 124 ~~~~~Iiv~Tp~~l~~~l~~~~~---~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~-----~~~~~~l~~SAT~~~~~ 195 (219)
T 1q0u_A 124 NVQPHIVIGTPGRINDFIREQAL---DVHTAHILVVDEADLMLDMGFITDVDQIAARM-----PKDLQMLVFSATIPEKL 195 (219)
T ss_dssp SSCCSEEEECHHHHHHHHHTTCC---CGGGCCEEEECSHHHHHHTTCHHHHHHHHHTS-----CTTCEEEEEESCCCGGG
T ss_pred CCCCCEEEeCHHHHHHHHHcCCC---CcCcceEEEEcCchHHhhhChHHHHHHHHHhC-----CcccEEEEEecCCCHHH
Confidence 66789999999999999987553 35678999999999999999999999998877 35789999999999887
Q ss_pred HhHHh
Q psy16310 1004 KNSLN 1008 (1493)
Q Consensus 1004 ~~~~~ 1008 (1493)
...+.
T Consensus 196 ~~~~~ 200 (219)
T 1q0u_A 196 KPFLK 200 (219)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-29 Score=279.80 Aligned_cols=202 Identities=31% Similarity=0.482 Sum_probs=164.9
Q ss_pred ccccccccc-cCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCcc
Q psy16310 147 FVQMAEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 225 (1493)
Q Consensus 147 ~~~~~~f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~ 225 (1493)
+.+..+|.+ +++++.++++|.+.||..|+++|.++++ .+..|+|++++||||||||++|++|++.++......
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~----- 88 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWP-IILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS----- 88 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSCHHHHHHHHHHHHHC----------
T ss_pred CCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch-----
Confidence 345567888 8999999999999999999999999998 556789999999999999999999999887532110
Q ss_pred CCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH
Q psy16310 226 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI 305 (1493)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~ 305 (1493)
.....++++||++||++||.|+++.+..+. ..++++..++|+.....+...
T Consensus 89 ----------------------------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 139 (228)
T 3iuy_A 89 ----------------------------REQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIED 139 (228)
T ss_dssp --------------------------------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHH
T ss_pred ----------------------------hhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHH
Confidence 112356789999999999999999999986 458899999999988888888
Q ss_pred hcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchh
Q psy16310 306 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385 (1493)
Q Consensus 306 l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~ 385 (1493)
+..+++|+|+||++|.+++...... +.++++|||||||++++++|...+..++..+
T Consensus 140 ~~~~~~iiv~Tp~~l~~~~~~~~~~---~~~~~~lViDEah~~~~~~~~~~~~~i~~~~--------------------- 195 (228)
T 3iuy_A 140 ISKGVDIIIATPGRLNDLQMNNSVN---LRSITYLVIDEADKMLDMEFEPQIRKILLDV--------------------- 195 (228)
T ss_dssp HHSCCSEEEECHHHHHHHHHTTCCC---CTTCCEEEECCHHHHHHTTCHHHHHHHHHHS---------------------
T ss_pred hcCCCCEEEECHHHHHHHHHcCCcC---cccceEEEEECHHHHhccchHHHHHHHHHhC---------------------
Confidence 8888999999999999988766543 5578999999999999999999999998776
Q ss_pred hhhhhhccccCCCCCceEEEEeeccchhhhhhhh
Q psy16310 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 419 (1493)
Q Consensus 386 ~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~ 419 (1493)
+..+|+++||||+|+.+..++.
T Consensus 196 ------------~~~~~~l~~SAT~~~~~~~~~~ 217 (228)
T 3iuy_A 196 ------------RPDRQTVMTSATWPDTVRQLAL 217 (228)
T ss_dssp ------------CSSCEEEEEESCCCHHHHHHHH
T ss_pred ------------CcCCeEEEEEeeCCHHHHHHHH
Confidence 3347999999999998877664
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-29 Score=277.09 Aligned_cols=194 Identities=27% Similarity=0.440 Sum_probs=166.2
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccC
Q psy16310 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 844 (1493)
Q Consensus 765 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~ 844 (1493)
.+...|+++++++.++++|.+.||..|+|+|.++++. +..|+|+++++|||||||++|++|++..+...
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~---------- 89 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPL-GRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE---------- 89 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT----------
T ss_pred CCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc----------
Confidence 4456799999999999999999999999999999995 55789999999999999999999999876421
Q ss_pred CcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCHHHHHHHh
Q psy16310 845 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRIL 923 (1493)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l 923 (1493)
..+.++|||+||++|+.|+++.++.++... ++++..++||.....+...+
T Consensus 90 -----------------------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 140 (230)
T 2oxc_A 90 -----------------------------NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL 140 (230)
T ss_dssp -----------------------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT
T ss_pred -----------------------------CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc
Confidence 234679999999999999999999998765 79999999999887776655
Q ss_pred cCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCC-ChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESG-HFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 924 ~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~-~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
. +++|+|+||++|.+++..+.. .+.++++||+||||++++++ |...+..++..++ ...|+++||||++..
T Consensus 141 ~-~~~Iiv~Tp~~l~~~~~~~~~---~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~-----~~~~~l~lSAT~~~~ 211 (230)
T 2oxc_A 141 K-KCHIAVGSPGRIKQLIELDYL---NPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP-----ASKQMLAVSATYPEF 211 (230)
T ss_dssp T-SCSEEEECHHHHHHHHHTTSS---CGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSC-----SSCEEEEEESCCCHH
T ss_pred c-CCCEEEECHHHHHHHHhcCCc---ccccCCEEEeCCchHhhcCcchHHHHHHHHHhCC-----CCCeEEEEEeccCHH
Confidence 4 689999999999999986653 35678999999999999997 8899999988873 578999999999987
Q ss_pred hHhHH
Q psy16310 1003 LKNSL 1007 (1493)
Q Consensus 1003 ~~~~~ 1007 (1493)
+...+
T Consensus 212 ~~~~~ 216 (230)
T 2oxc_A 212 LANAL 216 (230)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76655
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-29 Score=280.01 Aligned_cols=198 Identities=37% Similarity=0.607 Sum_probs=171.6
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCC
Q psy16310 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 227 (1493)
Q Consensus 148 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 227 (1493)
....+|+++++++.++++|..+||..|+++|.++++ .+..++|++++||||||||++|++|+++.+...
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~---------- 108 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIP-LALQGRDIIGLAETGSGKTGAFALPILNALLET---------- 108 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----------
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHH-HHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC----------
Confidence 345679999999999999999999999999999998 556789999999999999999999999887541
Q ss_pred CccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhc
Q psy16310 228 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 307 (1493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~ 307 (1493)
..++++|||+||++|+.|+++.+..++...++++..++|+.....+...+.
T Consensus 109 -----------------------------~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 159 (249)
T 3ber_A 109 -----------------------------PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 159 (249)
T ss_dssp -----------------------------CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH
T ss_pred -----------------------------CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc
Confidence 234679999999999999999999998888899999999999888888888
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
.+++|+|+||++|.+++..... ..+.++++|||||||++++++|...+..++..+
T Consensus 160 ~~~~I~v~Tp~~l~~~l~~~~~--~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~----------------------- 214 (249)
T 3ber_A 160 KKPHIIIATPGRLIDHLENTKG--FNLRALKYLVMDEADRILNMDFETEVDKILKVI----------------------- 214 (249)
T ss_dssp TCCSEEEECHHHHHHHHHHSTT--CCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSS-----------------------
T ss_pred CCCCEEEECHHHHHHHHHcCCC--cCccccCEEEEcChhhhhccChHHHHHHHHHhC-----------------------
Confidence 8899999999999999875321 125578999999999999999999999988765
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
+..+|+++||||++..+..+.+.
T Consensus 215 ----------~~~~~~l~~SAT~~~~v~~~~~~ 237 (249)
T 3ber_A 215 ----------PRDRKTFLFSATMTKKVQKLQRA 237 (249)
T ss_dssp ----------CSSSEEEEEESSCCHHHHHHHHH
T ss_pred ----------CCCCeEEEEeccCCHHHHHHHHH
Confidence 33479999999999988776643
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-29 Score=280.78 Aligned_cols=196 Identities=30% Similarity=0.529 Sum_probs=160.6
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccC
Q psy16310 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 844 (1493)
Q Consensus 765 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~ 844 (1493)
..+.+|+++++++.++++|...||..|+|+|.++|+.+ ..++|++++||||||||++|++|+++.+..
T Consensus 27 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i-~~~~~~li~apTGsGKT~~~~l~~l~~l~~----------- 94 (237)
T 3bor_A 27 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPC-IKGYDVIAQAQSGTGKTATFAISILQQLEI----------- 94 (237)
T ss_dssp CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHH-HTTCCEEECCCSSHHHHHHHHHHHHHHCCT-----------
T ss_pred CccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCCEEEECCCCCcHHHHHHHHHHHHHHh-----------
Confidence 34567999999999999999999999999999999954 477899999999999999999999987632
Q ss_pred CcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc
Q psy16310 845 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 924 (1493)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~ 924 (1493)
...+.++|||+||++|+.|+++.++.++...++.+..++||.....+...+.
T Consensus 95 ----------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 146 (237)
T 3bor_A 95 ----------------------------EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQ 146 (237)
T ss_dssp ----------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC------------
T ss_pred ----------------------------cCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHh
Confidence 1234579999999999999999999999888899999999988777766665
Q ss_pred CC-CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 925 KC-PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 925 ~~-~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
.+ ++|+|+||++|.+++..+.. .+.++++|||||||++++++|...+..++..+ +...|+++||||++..+
T Consensus 147 ~~~~~Ilv~Tp~~l~~~l~~~~~---~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~-----~~~~~~i~~SAT~~~~~ 218 (237)
T 3bor_A 147 AEAPHIVVGTPGRVFDMLNRRYL---SPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL-----NTSIQVVLLSATMPTDV 218 (237)
T ss_dssp -CCCSEEEECHHHHHHHHHTTSS---CSTTCCEEEEESHHHHHHTTCHHHHHHHHHHS-----CTTCEEEEECSSCCHHH
T ss_pred cCCCCEEEECHHHHHHHHHhCCc---CcccCcEEEECCchHhhccCcHHHHHHHHHhC-----CCCCeEEEEEEecCHHH
Confidence 54 89999999999999987654 35578999999999999999999999998877 36789999999999887
Q ss_pred HhHHh
Q psy16310 1004 KNSLN 1008 (1493)
Q Consensus 1004 ~~~~~ 1008 (1493)
...+.
T Consensus 219 ~~~~~ 223 (237)
T 3bor_A 219 LEVTK 223 (237)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=276.72 Aligned_cols=199 Identities=31% Similarity=0.493 Sum_probs=167.9
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccC
Q psy16310 765 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 844 (1493)
Q Consensus 765 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~ 844 (1493)
..+.+|+++++++.++++|...||..|+|+|.++++. +..|+|+++++|||||||++|++|+++.+.....
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~-------- 92 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGL-ALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW-------- 92 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC--------
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc--------
Confidence 3456799999999999999999999999999999985 5578999999999999999999999988754210
Q ss_pred CcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc
Q psy16310 845 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN 924 (1493)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~ 924 (1493)
....+.++||++||++|+.|+++.++.++...++++..++||.....+...+
T Consensus 93 ---------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~- 144 (236)
T 2pl3_A 93 ---------------------------TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI- 144 (236)
T ss_dssp ---------------------------CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-
T ss_pred ---------------------------cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-
Confidence 1124567999999999999999999999988889999999998776665555
Q ss_pred CCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 925 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 925 ~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
.+++|+|+||++|.+++..... ..+.++++||+||||++++++|...+..++..+ +..+|+++||||+++.+.
T Consensus 145 ~~~~iiv~Tp~~l~~~l~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~-----~~~~~~l~~SAT~~~~~~ 217 (236)
T 2pl3_A 145 NNINILVCTPGRLLQHMDETVS--FHATDLQMLVLDEADRILDMGFADTMNAVIENL-----PKKRQTLLFSATQTKSVK 217 (236)
T ss_dssp TTCSEEEECHHHHHHHHHHCSS--CCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTS-----CTTSEEEEEESSCCHHHH
T ss_pred CCCCEEEECHHHHHHHHHhcCC--cccccccEEEEeChHHHhcCCcHHHHHHHHHhC-----CCCCeEEEEEeeCCHHHH
Confidence 4689999999999998876431 235678999999999999999999999998877 357899999999998876
Q ss_pred hHH
Q psy16310 1005 NSL 1007 (1493)
Q Consensus 1005 ~~~ 1007 (1493)
...
T Consensus 218 ~~~ 220 (236)
T 2pl3_A 218 DLA 220 (236)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-29 Score=285.23 Aligned_cols=208 Identities=36% Similarity=0.554 Sum_probs=174.1
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCC
Q psy16310 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 845 (1493)
Q Consensus 766 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 845 (1493)
.+.+|+++++++.++++|...||..|+|+|.++|+. +..++|++++||||||||++|++|+++.+........
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~------ 93 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPA-ILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQ------ 93 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC---------
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccc------
Confidence 456799999999999999999999999999999995 5577899999999999999999999998864321000
Q ss_pred cchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcC
Q psy16310 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925 (1493)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~ 925 (1493)
......++++|||+||++|+.|+++.++.++...++.+..++||.....+...+..
T Consensus 94 ------------------------~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 149 (253)
T 1wrb_A 94 ------------------------RYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQM 149 (253)
T ss_dssp ---------------------------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSS
T ss_pred ------------------------cccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCC
Confidence 00123446899999999999999999999998888999999999998888888888
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHh
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
+++|+|+||++|.+++..+.. .+.++++||+||||+|++++|...+..++..+... ....+|+++||||+++.+..
T Consensus 150 ~~~Ivv~Tp~~l~~~l~~~~~---~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~-~~~~~q~l~~SAT~~~~~~~ 225 (253)
T 1wrb_A 150 GCHLLVATPGRLVDFIEKNKI---SLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMP-SGINRQTLMFSATFPKEIQK 225 (253)
T ss_dssp CCSEEEECHHHHHHHHHTTSB---CCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCC-CGGGCEEEEEESSCCHHHHH
T ss_pred CCCEEEECHHHHHHHHHcCCC---ChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCC-CCCCcEEEEEEEeCCHHHHH
Confidence 899999999999999987653 35678999999999999999999999999865321 11268999999999988776
Q ss_pred HHh
Q psy16310 1006 SLN 1008 (1493)
Q Consensus 1006 ~~~ 1008 (1493)
.+.
T Consensus 226 ~~~ 228 (253)
T 1wrb_A 226 LAA 228 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=269.71 Aligned_cols=193 Identities=27% Similarity=0.541 Sum_probs=168.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|+++++++.+++.|.+.||..|+|+|.++++ .+..++|+++++|||||||++|++|+++++..
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-------------- 67 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP-IALSGRDILARAKNGTGKSGAYLIPLLERLDL-------------- 67 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHH-HHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT--------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHccCCCEEEECCCCCchHHHHHHHHHHHhcc--------------
Confidence 469999999999999999999999999999998 55678999999999999999999999976632
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
...++++||++||++|+.|+++.+..+.... ++.+..++|+.....+...+..+
T Consensus 68 -------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 122 (206)
T 1vec_A 68 -------------------------KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 122 (206)
T ss_dssp -------------------------TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSC
T ss_pred -------------------------cCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCC
Confidence 1234679999999999999999999998776 78999999999988888888888
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
++|+|+||++|.+.+..+... +.++++|||||||++++.+|...+..++..+
T Consensus 123 ~~i~v~T~~~l~~~~~~~~~~---~~~~~~lViDEah~~~~~~~~~~l~~i~~~~------------------------- 174 (206)
T 1vec_A 123 VHVVIATPGRILDLIKKGVAK---VDHVQMIVLDEADKLLSQDFVQIMEDIILTL------------------------- 174 (206)
T ss_dssp CSEEEECHHHHHHHHHTTCSC---CTTCCEEEEETHHHHTSTTTHHHHHHHHHHS-------------------------
T ss_pred CCEEEeCHHHHHHHHHcCCcC---cccCCEEEEEChHHhHhhCcHHHHHHHHHhC-------------------------
Confidence 999999999999999866543 5578999999999999999999998888766
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLN 419 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~ 419 (1493)
+...|+++||||++..+..++.
T Consensus 175 --------~~~~~~l~~SAT~~~~~~~~~~ 196 (206)
T 1vec_A 175 --------PKNRQILLYSATFPLSVQKFMN 196 (206)
T ss_dssp --------CTTCEEEEEESCCCHHHHHHHH
T ss_pred --------CccceEEEEEeeCCHHHHHHHH
Confidence 2347999999999988776654
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=281.17 Aligned_cols=198 Identities=35% Similarity=0.470 Sum_probs=167.9
Q ss_pred cccccC--CCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 152 EWVKFN--IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 152 ~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
.|.+++ +++.++++|..+||..|+++|.++++. +..++|++++||||||||++|++|+++.+.....
T Consensus 53 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~---------- 121 (262)
T 3ly5_A 53 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRP-LLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF---------- 121 (262)
T ss_dssp CC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHH-HHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC----------
T ss_pred ChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc----------
Confidence 466666 999999999999999999999999985 5567999999999999999999999988864211
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
....+.++|||+||++||.|+++.+..++...++.+..++|+.....+...+..+
T Consensus 122 -------------------------~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 176 (262)
T 3ly5_A 122 -------------------------MPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNG 176 (262)
T ss_dssp -------------------------CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHC
T ss_pred -------------------------cccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCC
Confidence 1123567999999999999999999999988899999999999998888888888
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
++|+|+||++|.+++..... ..+.++++|||||||++++++|...+..++..+
T Consensus 177 ~~Iiv~Tp~~l~~~~~~~~~--~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~------------------------- 229 (262)
T 3ly5_A 177 INIIVATPGRLLDHMQNTPG--FMYKNLQCLVIDEADRILDVGFEEELKQIIKLL------------------------- 229 (262)
T ss_dssp CSEEEECHHHHHHHHHHCTT--CCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHS-------------------------
T ss_pred CCEEEEcHHHHHHHHHccCC--cccccCCEEEEcChHHHhhhhHHHHHHHHHHhC-------------------------
Confidence 99999999999998876431 135588999999999999999999999998876
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
+..+|+++||||+++.+..+.+.
T Consensus 230 --------~~~~q~l~~SAT~~~~v~~~~~~ 252 (262)
T 3ly5_A 230 --------PTRRQTMLFSATQTRKVEDLARI 252 (262)
T ss_dssp --------CSSSEEEEECSSCCHHHHHHHHH
T ss_pred --------CCCCeEEEEEecCCHHHHHHHHH
Confidence 33479999999999988877653
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-29 Score=275.51 Aligned_cols=194 Identities=36% Similarity=0.598 Sum_probs=166.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|+++++++.+++++.+.||..|+++|.++++ .+..++|+++++|||||||++|++|+++.+..
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~-------------- 68 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIP-GALRGESMVGQSQTGTGKTHAYLLPIMEKIKP-------------- 68 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHH-HHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT--------------
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCCChHHHHHHHHHHHHHHh--------------
Confidence 468999999999999999999999999999998 55578999999999999999999999977632
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC----CeEEEEEEcCCCHHHHHHHh
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT----PVKVACVVGGMSTEKQLRIL 306 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~----~i~v~~~~G~~~~~~~~~~l 306 (1493)
...++++||++||++|+.|+++.+..+.... ++.+..++|+.........+
T Consensus 69 -------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 123 (219)
T 1q0u_A 69 -------------------------ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL 123 (219)
T ss_dssp -------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCC
T ss_pred -------------------------CcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHc
Confidence 1234679999999999999999999988766 68899999998777666666
Q ss_pred cCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
..+++|+|+||++|.+++..+... +.++++|||||||+++++++...+..++..+
T Consensus 124 ~~~~~Iiv~Tp~~l~~~l~~~~~~---~~~~~~lViDEah~~~~~~~~~~l~~i~~~~---------------------- 178 (219)
T 1q0u_A 124 NVQPHIVIGTPGRINDFIREQALD---VHTAHILVVDEADLMLDMGFITDVDQIAARM---------------------- 178 (219)
T ss_dssp SSCCSEEEECHHHHHHHHHTTCCC---GGGCCEEEECSHHHHHHTTCHHHHHHHHHTS----------------------
T ss_pred CCCCCEEEeCHHHHHHHHHcCCCC---cCcceEEEEcCchHHhhhChHHHHHHHHHhC----------------------
Confidence 668899999999999999875543 4578999999999999999999998888765
Q ss_pred hhhhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 387 ~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
+...|+++||||+++.+..++..
T Consensus 179 -----------~~~~~~l~~SAT~~~~~~~~~~~ 201 (219)
T 1q0u_A 179 -----------PKDLQMLVFSATIPEKLKPFLKK 201 (219)
T ss_dssp -----------CTTCEEEEEESCCCGGGHHHHHH
T ss_pred -----------CcccEEEEEecCCCHHHHHHHHH
Confidence 23479999999999888776653
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=272.94 Aligned_cols=195 Identities=28% Similarity=0.443 Sum_probs=165.0
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCC
Q psy16310 148 VQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 227 (1493)
Q Consensus 148 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~ 227 (1493)
....+|+++++++.+.+.|.+.||..|+++|.++++ .+..++|+++++|||||||++|++|+++.+..
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~----------- 88 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIP-LGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL----------- 88 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT-----------
T ss_pred CCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh-----------
Confidence 344679999999999999999999999999999998 56678999999999999999999999977632
Q ss_pred CccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHHHHHHh
Q psy16310 228 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRIL 306 (1493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~~~~~l 306 (1493)
...+.++|||+||++|+.|+++.+..++... ++++..++|+.....+...+
T Consensus 89 ----------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 140 (230)
T 2oxc_A 89 ----------------------------ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL 140 (230)
T ss_dssp ----------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT
T ss_pred ----------------------------cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc
Confidence 1234679999999999999999999988665 79999999999887766655
Q ss_pred cCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcC-ChhhHHHHHHhhccccCCCccccccccCCcchh
Q psy16310 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESG-HFPELKNILDRVTMTETSQPRQTMIESGHFPEL 385 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~-~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~ 385 (1493)
.+++|+|+||++|.+++..+... +.++++|||||||++++++ |...+..++..+
T Consensus 141 -~~~~Iiv~Tp~~l~~~~~~~~~~---~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~--------------------- 195 (230)
T 2oxc_A 141 -KKCHIAVGSPGRIKQLIELDYLN---PGSIRLFILDEADKLLEEGSFQEQINWIYSSL--------------------- 195 (230)
T ss_dssp -TSCSEEEECHHHHHHHHHTTSSC---GGGCCEEEESSHHHHHSTTSSHHHHHHHHHHS---------------------
T ss_pred -cCCCEEEECHHHHHHHHhcCCcc---cccCCEEEeCCchHhhcCcchHHHHHHHHHhC---------------------
Confidence 46899999999999998866543 4578999999999999987 899998888766
Q ss_pred hhhhhhccccCCCCCceEEEEeeccchhhhhhhh
Q psy16310 386 KNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 419 (1493)
Q Consensus 386 ~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~ 419 (1493)
+...|+++||||+++.+..++.
T Consensus 196 ------------~~~~~~l~lSAT~~~~~~~~~~ 217 (230)
T 2oxc_A 196 ------------PASKQMLAVSATYPEFLANALT 217 (230)
T ss_dssp ------------CSSCEEEEEESCCCHHHHHHHT
T ss_pred ------------CCCCeEEEEEeccCHHHHHHHH
Confidence 2347999999999988766553
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=276.71 Aligned_cols=195 Identities=30% Similarity=0.531 Sum_probs=158.9
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 149 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
...+|+++++++.++++|...||..|+++|.++++ .+..++|++++||||||||++|++|+++.+..
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~-~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~------------ 94 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAII-PCIKGYDVIAQAQSGTGKTATFAISILQQLEI------------ 94 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHH-HHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT------------
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------------
Confidence 35679999999999999999999999999999998 45578999999999999999999999977632
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcC
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
...+.++|||+||++|+.|+++.+..++...++.+..++|+.....+...+..
T Consensus 95 ---------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 147 (237)
T 3bor_A 95 ---------------------------EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA 147 (237)
T ss_dssp ---------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------
T ss_pred ---------------------------cCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhc
Confidence 12346799999999999999999999998888999999999887777666655
Q ss_pred C-CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 309 C-PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 309 ~-~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
+ ++|+|+||++|.+++..+... +.++++|||||||++++++|...+..++..+
T Consensus 148 ~~~~Ilv~Tp~~l~~~l~~~~~~---~~~~~~lViDEah~~~~~~~~~~l~~i~~~~----------------------- 201 (237)
T 3bor_A 148 EAPHIVVGTPGRVFDMLNRRYLS---PKWIKMFVLDEADEMLSRGFKDQIYEIFQKL----------------------- 201 (237)
T ss_dssp CCCSEEEECHHHHHHHHHTTSSC---STTCCEEEEESHHHHHHTTCHHHHHHHHHHS-----------------------
T ss_pred CCCCEEEECHHHHHHHHHhCCcC---cccCcEEEECCchHhhccCcHHHHHHHHHhC-----------------------
Confidence 5 899999999999999876543 4578999999999999999999998888765
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 419 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~ 419 (1493)
+..+|+++||||+++.+..++.
T Consensus 202 ----------~~~~~~i~~SAT~~~~~~~~~~ 223 (237)
T 3bor_A 202 ----------NTSIQVVLLSATMPTDVLEVTK 223 (237)
T ss_dssp ----------CTTCEEEEECSSCCHHHHHHHH
T ss_pred ----------CCCCeEEEEEEecCHHHHHHHH
Confidence 3347999999999988877664
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=294.97 Aligned_cols=130 Identities=20% Similarity=0.196 Sum_probs=112.7
Q ss_pred ccccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEE
Q psy16310 524 KILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600 (1493)
Q Consensus 524 ~~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVa 600 (1493)
.+......|...+...+.. .+.++||||+|+..++.|+..|...|+.+..+||++.+.++..+...|+.| .|+||
T Consensus 451 ~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVA 528 (822)
T 3jux_A 451 LVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIA 528 (822)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEE
T ss_pred EEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEE
Confidence 3555666788888887765 367999999999999999999999999999999996666666566666666 69999
Q ss_pred echhhccCCCC--------CCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchh
Q psy16310 601 TDVAARGLDIP--------GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 601 Tdv~~rGlDip--------~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
||+|+||+||+ +..+||+|++|.+...|+||+|||||+|.+|.+++|++.+|...
T Consensus 529 TdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~ 591 (822)
T 3jux_A 529 TNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLL 591 (822)
T ss_dssp ETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHH
T ss_pred cchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHH
Confidence 99999999998 66799999999999999999999999999999999999988444
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-29 Score=280.84 Aligned_cols=209 Identities=36% Similarity=0.545 Sum_probs=174.5
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 149 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
.+.+|.++++++.++++|...||..|+++|.++++ .+..++|++++||||||||++|++|+++++........
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~------ 93 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIP-AILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQ------ 93 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC---------
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccc------
Confidence 45679999999999999999999999999999998 55678999999999999999999999998864221100
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcC
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
......++++|||+||++||.|+++.+..++...++.+..++|+.....+...+..
T Consensus 94 ------------------------~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 149 (253)
T 1wrb_A 94 ------------------------RYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQM 149 (253)
T ss_dssp ---------------------------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSS
T ss_pred ------------------------cccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCC
Confidence 00123346899999999999999999999988888999999999998888888888
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
+++|+|+||++|.+++...... +.++++|||||||++++++|...+..++..+....
T Consensus 150 ~~~Ivv~Tp~~l~~~l~~~~~~---~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~-------------------- 206 (253)
T 1wrb_A 150 GCHLLVATPGRLVDFIEKNKIS---LEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPS-------------------- 206 (253)
T ss_dssp CCSEEEECHHHHHHHHHTTSBC---CTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCC--------------------
T ss_pred CCCEEEECHHHHHHHHHcCCCC---hhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCC--------------------
Confidence 8999999999999999876543 55789999999999999999999999987543210
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
...+|+++||||+++.+..+...
T Consensus 207 ---------~~~~q~l~~SAT~~~~~~~~~~~ 229 (253)
T 1wrb_A 207 ---------GINRQTLMFSATFPKEIQKLAAD 229 (253)
T ss_dssp ---------GGGCEEEEEESSCCHHHHHHHHH
T ss_pred ---------CCCcEEEEEEEeCCHHHHHHHHH
Confidence 12479999999999988776653
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=328.12 Aligned_cols=123 Identities=18% Similarity=0.359 Sum_probs=113.2
Q ss_pred ccccCchhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHh-cCCCccccccCCCHHHHHHHHHHHhcCC--CeEEEEe
Q psy16310 526 LCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTM-LKCSPLPLHASMNQRQRLKNLDRFRDQN--NSILLAT 601 (1493)
Q Consensus 526 ~~~~~~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~-~~~~~~~lhg~~~~~~R~~vl~~Fr~g~--~~VLVaT 601 (1493)
.+..+.|...+..++... ++++||||+++..+..++..|.. .|+.+..+||+|++.+|..+++.|++|+ ++|||||
T Consensus 484 ~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT 563 (968)
T 3dmq_A 484 WWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS 563 (968)
T ss_dssp TTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS
T ss_pred ccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec
Confidence 345567888888888764 67999999999999999999994 6999999999999999999999999998 9999999
Q ss_pred chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEe
Q psy16310 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648 (1493)
Q Consensus 602 dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~ 648 (1493)
+++++|+|+|+|++||+||+|.++..|+||+||+||.|..|.|++++
T Consensus 564 ~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 564 EIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp CCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred chhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999766664
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=272.25 Aligned_cols=194 Identities=29% Similarity=0.495 Sum_probs=161.3
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCC
Q psy16310 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 845 (1493)
Q Consensus 766 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 845 (1493)
.+.+|+++++++.+++.|...||..|+|+|.++++. +..++|+++++|||||||++|++|+++.+..
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~------------ 78 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMP-IIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------------ 78 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------------
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEECCCCCcHHHHHHHHHHHHHhc------------
Confidence 356799999999999999999999999999999985 4577899999999999999999999987632
Q ss_pred cchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcC
Q psy16310 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925 (1493)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~ 925 (1493)
...+.++||++||++|+.|+++.+..++...++++..++||.....+...+..
T Consensus 79 ---------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 131 (224)
T 1qde_A 79 ---------------------------SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD 131 (224)
T ss_dssp ---------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT
T ss_pred ---------------------------cCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC
Confidence 13456799999999999999999999988889999999999877766655554
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHh
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
++|+|+||++|.+.+..+.. .+.++++||+||||++.+++|...+..++..+ +...|+++||||+++.+..
T Consensus 132 -~~iiv~Tp~~l~~~~~~~~~---~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~-----~~~~~~i~lSAT~~~~~~~ 202 (224)
T 1qde_A 132 -AQIVVGTPGRVFDNIQRRRF---RTDKIKMFILDEADEMLSSGFKEQIYQIFTLL-----PPTTQVVLLSATMPNDVLE 202 (224)
T ss_dssp -CSEEEECHHHHHHHHHTTSS---CCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS-----CTTCEEEEEESSCCHHHHH
T ss_pred -CCEEEECHHHHHHHHHhCCc---chhhCcEEEEcChhHHhhhhhHHHHHHHHHhC-----CccCeEEEEEeecCHHHHH
Confidence 89999999999999887543 35678999999999999999999999998876 3678999999999988776
Q ss_pred HHh
Q psy16310 1006 SLN 1008 (1493)
Q Consensus 1006 ~~~ 1008 (1493)
.+.
T Consensus 203 ~~~ 205 (224)
T 1qde_A 203 VTT 205 (224)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-28 Score=270.99 Aligned_cols=200 Identities=31% Similarity=0.503 Sum_probs=167.2
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 149 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
...+|+++++++.+++.|...||..|+++|.++++ .+..++|+++++|||||||++|++|+++.+.....
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~-~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~--------- 92 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIG-LALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW--------- 92 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHH-HHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC---------
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc---------
Confidence 45679999999999999999999999999999998 55678999999999999999999999988864210
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcC
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
....++++||++||++||.|+++.+..++...++.+..++|+.....+...+ .
T Consensus 93 --------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~ 145 (236)
T 2pl3_A 93 --------------------------TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-N 145 (236)
T ss_dssp --------------------------CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-T
T ss_pred --------------------------cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-C
Confidence 1123567999999999999999999999988889999999998876665555 4
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
+++|+|+||++|.+++..... ..+.++++|||||||++++++|...+..++..+
T Consensus 146 ~~~iiv~Tp~~l~~~l~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~------------------------ 199 (236)
T 2pl3_A 146 NINILVCTPGRLLQHMDETVS--FHATDLQMLVLDEADRILDMGFADTMNAVIENL------------------------ 199 (236)
T ss_dssp TCSEEEECHHHHHHHHHHCSS--CCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTS------------------------
T ss_pred CCCEEEECHHHHHHHHHhcCC--cccccccEEEEeChHHHhcCCcHHHHHHHHHhC------------------------
Confidence 689999999999998875421 124578999999999999999999999888765
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
+..+|+++||||+++.+..+.+.
T Consensus 200 ---------~~~~~~l~~SAT~~~~~~~~~~~ 222 (236)
T 2pl3_A 200 ---------PKKRQTLLFSATQTKSVKDLARL 222 (236)
T ss_dssp ---------CTTSEEEEEESSCCHHHHHHHHH
T ss_pred ---------CCCCeEEEEEeeCCHHHHHHHHH
Confidence 33479999999999888776543
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=266.65 Aligned_cols=192 Identities=38% Similarity=0.580 Sum_probs=165.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcch
Q psy16310 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848 (1493)
Q Consensus 769 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 848 (1493)
+|+++++++.+++.|.+.||..|+|+|.++++. +..++|+++++|||||||++|++|++..+....
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~------------- 67 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPL-ALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ------------- 67 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC-------------
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-------------
Confidence 589999999999999999999999999999985 557789999999999999999999998774311
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCc
Q psy16310 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928 (1493)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~ 928 (1493)
....++++||++||++|+.|+++.+..++.. +++..++||.....+...+..+++
T Consensus 68 -----------------------~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 122 (207)
T 2gxq_A 68 -----------------------ERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGAD 122 (207)
T ss_dssp -----------------------CTTCCCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCS
T ss_pred -----------------------ccCCCCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCC
Confidence 1234568999999999999999999998654 778889999887777777777889
Q ss_pred EEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 929 IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
|+|+||+++.+++..+.. .+.++++||+||||++.+++|...+..++..+ +...|+++||||+++.+...+
T Consensus 123 i~v~T~~~l~~~~~~~~~---~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~-----~~~~~~i~~SAT~~~~~~~~~ 193 (207)
T 2gxq_A 123 AVVATPGRALDYLRQGVL---DLSRVEVAVLDEADEMLSMGFEEEVEALLSAT-----PPSRQTLLFSATLPSWAKRLA 193 (207)
T ss_dssp EEEECHHHHHHHHHHTSS---CCTTCSEEEEESHHHHHHTTCHHHHHHHHHTS-----CTTSEEEEECSSCCHHHHHHH
T ss_pred EEEECHHHHHHHHHcCCc---chhhceEEEEEChhHhhccchHHHHHHHHHhC-----CccCeEEEEEEecCHHHHHHH
Confidence 999999999999987553 35678999999999999999999999988776 357899999999998776655
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-28 Score=315.94 Aligned_cols=329 Identities=15% Similarity=0.102 Sum_probs=211.4
Q ss_pred CCCcHHHHhhHHHhhc-------------cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHH
Q psy16310 789 KTPTKIQSMVMPSALL-------------ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEV 855 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~-------------~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 855 (1493)
..|+|+|..|++.++. .+++.+++++||||||+++ ++++..+..
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~---------------------- 326 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE---------------------- 326 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT----------------------
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh----------------------
Confidence 3699999999997664 1468999999999999997 666644311
Q ss_pred HHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhc-CCCcEEEECc
Q psy16310 856 LEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILN-KCPHILVATP 934 (1493)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~TP 934 (1493)
.....++||||||++|+.|+.+.+..++.. .+.|+.+.......+. ..++|+|+||
T Consensus 327 -----------------~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTi 383 (1038)
T 2w00_A 327 -----------------LDFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTI 383 (1038)
T ss_dssp -----------------CTTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEH
T ss_pred -----------------cCCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEH
Confidence 122358999999999999999999887643 2345555555555553 5689999999
Q ss_pred HHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH----hHHhhh
Q psy16310 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK----NSLNLK 1010 (1493)
Q Consensus 935 ~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~----~~~~~~ 1010 (1493)
++|..++..... ...+....+||+||||++... .....|...+ ++.++++||||+..... ......
T Consensus 384 qkl~~~l~~~~~-~~~~~~~~lvIiDEAHrs~~~---~~~~~I~~~~------p~a~~lgfTATP~~~~~~~~~~~t~~~ 453 (1038)
T 2w00_A 384 QKLNNLMKAESD-LPVYNQQVVFIFDECHRSQFG---EAQKNLKKKF------KRYYQFGFTGTPIFPENALGSETTASV 453 (1038)
T ss_dssp HHHHHHHHHCCC-CGGGGSCEEEEEESCCTTHHH---HHHHHHHHHC------SSEEEEEEESSCCCSTTCTTSCCHHHH
T ss_pred HHHHHHHhcccc-hhccccccEEEEEccchhcch---HHHHHHHHhC------CcccEEEEeCCccccccchhhhHHHHH
Confidence 999998865421 123456789999999997642 2345566665 45899999999975321 000000
Q ss_pred ccCcCcccccCCCchhHHHHhHhccCCCcEEeccc---cc---------cccccceeeEEEecccchhhHHHHHH-H---
Q psy16310 1011 KGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTE---KI---------GITKTLTESKILCKHDEKDSYLYYFI-L--- 1074 (1493)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~---------~~~~~~~~~~~~~~~~~k~~~l~~~l-~--- 1074 (1493)
.+... .. -.+......-.+. +..+.... .. .....+...... ....+...+...+ .
T Consensus 454 FG~~i----~~--Y~l~~AI~dg~l~-p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l-~~~~ri~~I~~~Il~~~~ 525 (1038)
T 2w00_A 454 FGREL----HS--YVITDAIRDEKVL-KFKVDYNDVRPQFKSLETETDEKKLSAAENQQAF-LHPMRIQEITQYILNNFR 525 (1038)
T ss_dssp HCSEE----EE--ECHHHHHHHTSSC-CEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTT-TCHHHHHHHHHHHHHHHH
T ss_pred hCCee----Ee--ecHHHHHhCCCcC-CeEEEEEeccchhhhccccccHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHH
Confidence 01000 00 0011111100011 11111000 00 000000000001 1122222322222 1
Q ss_pred -h--------CCCcEEEEecchhhHHHHHHHHHhcC------------CCc-cccccC----------C----------C
Q psy16310 1075 -Q--------HPGRTLVFCNSISSVKRLTQLLTMLK------------CSP-LPLHAS----------M----------N 1112 (1493)
Q Consensus 1075 -~--------~~~~~IVF~~s~~~~~~l~~~L~~~~------------~~~-~~lhg~----------m----------~ 1112 (1493)
. .+.++||||+|+.+|..++..|...+ ..+ .++||+ | +
T Consensus 526 ~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~ 605 (1038)
T 2w00_A 526 QKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMD 605 (1038)
T ss_dssp HHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSC
T ss_pred HhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccc
Confidence 1 23579999999999999999998764 444 445642 2 3
Q ss_pred HH-----------------------------HHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHH
Q psy16310 1113 QR-----------------------------QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIH 1163 (1493)
Q Consensus 1113 ~~-----------------------------~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiq 1163 (1493)
+. .|..++++|++|+++|||+|+++.+|+|+|.+ +|+++|.|.+...|+|
T Consensus 606 ~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQ 684 (1038)
T 2w00_A 606 SSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQ 684 (1038)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceee
Confidence 22 48889999999999999999999999999999 7889999999999999
Q ss_pred HHhccCCCCCC----CeEEEEec
Q psy16310 1164 RSGRTARANNE----GLTLVLIE 1182 (1493)
Q Consensus 1164 r~GR~gR~g~~----G~~i~l~~ 1182 (1493)
|+||++|.+.. |.++.|+.
T Consensus 685 aIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 685 AFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHTTCCCCCTTCCSEEEEESSC
T ss_pred hhhccCcCCCCCCCcEEEEEccc
Confidence 99999998753 55555553
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.5e-28 Score=267.36 Aligned_cols=195 Identities=29% Similarity=0.489 Sum_probs=160.4
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 149 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
...+|+++++++.+++.+...||..|+++|.++++ .+..++|+++++|||||||++|++|+++.+..
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~------------ 78 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIM-PIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------------ 78 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------------
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHH-HHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc------------
Confidence 34679999999999999999999999999999998 55578999999999999999999999987632
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcC
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
...++++||++||++|+.|+++.+..++...++++..++|+.....+...+..
T Consensus 79 ---------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 131 (224)
T 1qde_A 79 ---------------------------SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD 131 (224)
T ss_dssp ---------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT
T ss_pred ---------------------------cCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC
Confidence 12356799999999999999999999988889999999999877666655544
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
++|+|+||++|.+.+...... +.++++|||||||+++++++...+..++..+
T Consensus 132 -~~iiv~Tp~~l~~~~~~~~~~---~~~~~~iViDEah~~~~~~~~~~l~~i~~~~------------------------ 183 (224)
T 1qde_A 132 -AQIVVGTPGRVFDNIQRRRFR---TDKIKMFILDEADEMLSSGFKEQIYQIFTLL------------------------ 183 (224)
T ss_dssp -CSEEEECHHHHHHHHHTTSSC---CTTCCEEEEETHHHHHHTTCHHHHHHHHHHS------------------------
T ss_pred -CCEEEECHHHHHHHHHhCCcc---hhhCcEEEEcChhHHhhhhhHHHHHHHHHhC------------------------
Confidence 899999999999998876443 4578999999999999999999898888765
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
+...|+++||||+++.+..++..
T Consensus 184 ---------~~~~~~i~lSAT~~~~~~~~~~~ 206 (224)
T 1qde_A 184 ---------PPTTQVVLLSATMPNDVLEVTTK 206 (224)
T ss_dssp ---------CTTCEEEEEESSCCHHHHHHHHH
T ss_pred ---------CccCeEEEEEeecCHHHHHHHHH
Confidence 33479999999999988776643
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-28 Score=276.59 Aligned_cols=199 Identities=30% Similarity=0.489 Sum_probs=160.9
Q ss_pred hccccccC----CCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCc
Q psy16310 766 QMAEWVKF----NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 841 (1493)
Q Consensus 766 ~~~~f~~l----~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~ 841 (1493)
++.+|+++ ++++.++++|.+.||..|+|+|.++|+. +..|+|++++||||||||++|++|++..+..
T Consensus 23 ~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~-------- 93 (245)
T 3dkp_A 23 PIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPV-MLHGRELLASAPTGSGKTLAFSIPILMQLKQ-------- 93 (245)
T ss_dssp CCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHHHHCS--------
T ss_pred cccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCCCcHHHHHHHHHHHHHhh--------
Confidence 34556655 8999999999999999999999999985 5577899999999999999999999987732
Q ss_pred ccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHH-
Q psy16310 842 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL- 920 (1493)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~- 920 (1493)
....+.++|||+||++|+.|+++.++.++...++++..++|+.......
T Consensus 94 ------------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (245)
T 3dkp_A 94 ------------------------------PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFG 143 (245)
T ss_dssp ------------------------------CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTS
T ss_pred ------------------------------cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhh
Confidence 1234568999999999999999999999988889888887764333221
Q ss_pred HHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccC---CChhHHHHHHHHhcccCCCCCceEEEEec
Q psy16310 921 RILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES---GHFPELKNILDRVTMTETSQPRQTFVFSA 997 (1493)
Q Consensus 921 ~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~---~~~~~l~~il~~l~~~~~~~~~q~ll~SA 997 (1493)
.....+++|+|+||++|.+++...... ..+.++++|||||||+++++ +|...+..++..+. +...|+++|||
T Consensus 144 ~~~~~~~~I~v~Tp~~l~~~l~~~~~~-~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~SA 218 (245)
T 3dkp_A 144 PKSSKKFDILVTTPNRLIYLLKQDPPG-IDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACT----SHKVRRAMFSA 218 (245)
T ss_dssp TTSCCCCCEEEECHHHHHHHHHSSSCS-CCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCC----CTTCEEEEEES
T ss_pred hhhcCCCCEEEECHHHHHHHHHhCCCC-cccccCcEEEEeChHHhcccccccHHHHHHHHHHhcC----CCCcEEEEEec
Confidence 223457899999999999999865322 24678999999999999984 66677777766553 35689999999
Q ss_pred ccccchHhHHh
Q psy16310 998 TLTHSLKNSLN 1008 (1493)
Q Consensus 998 Tl~~~~~~~~~ 1008 (1493)
|++..+..++.
T Consensus 219 T~~~~v~~~~~ 229 (245)
T 3dkp_A 219 TFAYDVEQWCK 229 (245)
T ss_dssp SCCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 99988877664
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=262.97 Aligned_cols=193 Identities=37% Similarity=0.576 Sum_probs=165.1
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccc
Q psy16310 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 231 (1493)
+|+++++++.+++.|.+.||..|+|+|.++++ .+..++|+++++|||||||++|++|+++.+....
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~-~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~------------- 67 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALP-LALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ------------- 67 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC-------------
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHH-HHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-------------
Confidence 58899999999999999999999999999998 5557899999999999999999999998764210
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCC
Q psy16310 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311 (1493)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~ 311 (1493)
....++++||++||++|+.|+++.+..+... +++..++|+.....+...+..+++
T Consensus 68 -----------------------~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 122 (207)
T 2gxq_A 68 -----------------------ERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGAD 122 (207)
T ss_dssp -----------------------CTTCCCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCS
T ss_pred -----------------------ccCCCCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCC
Confidence 1124567999999999999999999998754 778889999888877777777899
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1493)
|+|+||++|.+++..+... +.++++||+||||+++++++...+..++..+
T Consensus 123 i~v~T~~~l~~~~~~~~~~---~~~~~~iViDEah~~~~~~~~~~~~~i~~~~--------------------------- 172 (207)
T 2gxq_A 123 AVVATPGRALDYLRQGVLD---LSRVEVAVLDEADEMLSMGFEEEVEALLSAT--------------------------- 172 (207)
T ss_dssp EEEECHHHHHHHHHHTSSC---CTTCSEEEEESHHHHHHTTCHHHHHHHHHTS---------------------------
T ss_pred EEEECHHHHHHHHHcCCcc---hhhceEEEEEChhHhhccchHHHHHHHHHhC---------------------------
Confidence 9999999999999875543 5578999999999999999999998888654
Q ss_pred ccccCCCCCceEEEEeeccchhhhhhhh
Q psy16310 392 VTMTETSQPRQTFVFSATLTHSLKNSLN 419 (1493)
Q Consensus 392 ~~~~~~~~~~q~il~SATl~~~~~~~~~ 419 (1493)
+...|+++||||+++.+..+..
T Consensus 173 ------~~~~~~i~~SAT~~~~~~~~~~ 194 (207)
T 2gxq_A 173 ------PPSRQTLLFSATLPSWAKRLAE 194 (207)
T ss_dssp ------CTTSEEEEECSSCCHHHHHHHH
T ss_pred ------CccCeEEEEEEecCHHHHHHHH
Confidence 3357999999999988776654
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=265.36 Aligned_cols=193 Identities=30% Similarity=0.542 Sum_probs=163.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
...|++++|++.++++|.+.||..|+|+|.++++.+ ..++|+++++|||||||++|++|++..+..
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~li~~~TGsGKT~~~~~~~~~~~~~------------- 78 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA-ILGMDVLCQAKSGMGKTAVFVLATLQQLEP------------- 78 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHHHCCC-------------
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCCEEEECCCCCchhhhhhHHHHHhhhc-------------
Confidence 356999999999999999999999999999999854 467899999999999999999999976521
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCHHHHHHHhc-
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILN- 924 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~- 924 (1493)
...+.++||++||++|+.|+++.++.+.... ++++..++||.....+...+.
T Consensus 79 --------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 132 (220)
T 1t6n_A 79 --------------------------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK 132 (220)
T ss_dssp --------------------------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH
T ss_pred --------------------------cCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc
Confidence 1234579999999999999999999998776 799999999998877766554
Q ss_pred CCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhcc-CCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 925 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 925 ~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~-~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..++|+|+||++|.+++..+.. .+.++++||+||||++++ .+|...+..++..+ +...|+++||||+++.+
T Consensus 133 ~~~~i~v~T~~~l~~~~~~~~~---~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~-----~~~~~~i~~SAT~~~~~ 204 (220)
T 1t6n_A 133 NCPHIVVGTPGRILALARNKSL---NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMT-----PHEKQVMMFSATLSKEI 204 (220)
T ss_dssp SCCSEEEECHHHHHHHHHTTSS---CCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTS-----CSSSEEEEEESCCCTTT
T ss_pred CCCCEEEeCHHHHHHHHHhCCC---CcccCCEEEEcCHHHHhcccCcHHHHHHHHHhC-----CCcCeEEEEEeecCHHH
Confidence 3579999999999999887553 356889999999999987 47777777777665 35789999999999887
Q ss_pred HhHH
Q psy16310 1004 KNSL 1007 (1493)
Q Consensus 1004 ~~~~ 1007 (1493)
...+
T Consensus 205 ~~~~ 208 (220)
T 1t6n_A 205 RPVC 208 (220)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=297.58 Aligned_cols=332 Identities=14% Similarity=0.173 Sum_probs=212.5
Q ss_pred CCCcHHHHhhHHHhh---ccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 789 KTPTKIQSMVMPSAL---LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l---~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
..|+|+|.++++.++ ..+.++|++++||+|||++++..+ ..+..
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i-~~~~~-------------------------------- 82 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVF-SDAKK-------------------------------- 82 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHH-HHHHH--------------------------------
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHH-HHHHh--------------------------------
Confidence 469999999997443 457799999999999999965444 33321
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCc
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~ 945 (1493)
.....++|||||+ .|+.|+.+.+++++. ++++..+.|+... .....++|+|+|++++.....
T Consensus 83 -------~~~~~~~LIv~P~-~l~~qw~~e~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~--- 144 (500)
T 1z63_A 83 -------ENELTPSLVICPL-SVLKNWEEELSKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR--- 144 (500)
T ss_dssp -------TTCCSSEEEEECS-TTHHHHHHHHHHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---
T ss_pred -------cCCCCCEEEEccH-HHHHHHHHHHHHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---
Confidence 1223469999995 689999999999863 4566666665421 112356899999999865432
Q ss_pred CccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc-hHhHH---hhhccCcCc-----
Q psy16310 946 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS-LKNSL---NLKKGQSKS----- 1016 (1493)
Q Consensus 946 ~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~-~~~~~---~~~~~~~~~----- 1016 (1493)
.....+++||+||||++...+. .....+..+ ...+.+++|||+... ..+.. .........
T Consensus 145 ---l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l------~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f 213 (500)
T 1z63_A 145 ---LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKEL------KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEF 213 (500)
T ss_dssp ---HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTS------CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHH
T ss_pred ---hcCCCcCEEEEeCccccCCHhH--HHHHHHHhh------ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHH
Confidence 1123578999999999876442 344445444 335789999998643 22111 100000000
Q ss_pred -----ccccCCC-chhHHHHhHhccCCCcEEecccc-----ccccccceeeEEE--------------------------
Q psy16310 1017 -----KKVSKGD-PSIKRLQDLLNIKSPKIVDLTEK-----IGITKTLTESKIL-------------------------- 1059 (1493)
Q Consensus 1017 -----~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-------------------------- 1059 (1493)
..+.... .....+...+ .+..+..... ...+.. ....+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l---~~~~lrr~k~~~~~~~~lp~~-~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~ 289 (500)
T 1z63_A 214 KSKFATPIKKGDNMAKEELKAII---SPFILRRTKYDKAIINDLPDK-IETNVYCNLTPEQAAMYKAEVENLFNNIDSVT 289 (500)
T ss_dssp HTTTHHHHHTTCHHHHHHHHHHH---TTTEECCCTTCHHHHTTSCSE-EEEEEEECCCHHHHHHHHHHHHHHTTTTTTCC
T ss_pred HHHhccccccccHHHHHHHHHHH---hhHeeeecccccchhhcCCCC-eEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000000 0001111111 0100000000 000000 000000
Q ss_pred -------------------------------ecccchhhHHHHHHHh---CCCcEEEEecchhhHHHHHHHHHhc-CCCc
Q psy16310 1060 -------------------------------CKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTML-KCSP 1104 (1493)
Q Consensus 1060 -------------------------------~~~~~k~~~l~~~l~~---~~~~~IVF~~s~~~~~~l~~~L~~~-~~~~ 1104 (1493)
.....|...+..++.. .+.++||||+++..++.++..|... |+.+
T Consensus 290 ~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~ 369 (500)
T 1z63_A 290 GIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEV 369 (500)
T ss_dssp THHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCC
T ss_pred cccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCe
Confidence 1123344444444433 4679999999999999999999885 9999
Q ss_pred cccccCCCHHHHHHHHHHHhcC-CCC-eEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeE--EEE
Q psy16310 1105 LPLHASMNQRQRLKNLDRFRDQ-NNS-ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT--LVL 1180 (1493)
Q Consensus 1105 ~~lhg~m~~~~R~~~~~~F~~g-~~~-VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~--i~l 1180 (1493)
..+||+|++.+|..++++|++| ... +||||+++++|+|+|++++||+||+|.++..|+||+||++|.|+.+.+ +.|
T Consensus 370 ~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~l 449 (500)
T 1z63_A 370 PFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKL 449 (500)
T ss_dssp CEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEE
T ss_pred EEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEE
Confidence 9999999999999999999998 454 899999999999999999999999999999999999999999987665 445
Q ss_pred ecCCCH
Q psy16310 1181 IESDEI 1186 (1493)
Q Consensus 1181 ~~~~e~ 1186 (1493)
+..+..
T Consensus 450 v~~~ti 455 (500)
T 1z63_A 450 ISVGTL 455 (500)
T ss_dssp EETTSH
T ss_pred EeCCCH
Confidence 555543
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-28 Score=271.49 Aligned_cols=201 Identities=30% Similarity=0.499 Sum_probs=160.5
Q ss_pred cccccccc----CCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCc
Q psy16310 149 QMAEWVKF----NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEE 224 (1493)
Q Consensus 149 ~~~~f~~l----~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~ 224 (1493)
++.+|.++ ++++.+++++.+.||..|+|+|.++++ .+..++|++++||||||||++|++|+++++..
T Consensus 23 ~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~-------- 93 (245)
T 3dkp_A 23 PIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIP-VMLHGRELLASAPTGSGKTLAFSIPILMQLKQ-------- 93 (245)
T ss_dssp CCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS--------
T ss_pred cccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh--------
Confidence 34556655 899999999999999999999999998 55678999999999999999999999987732
Q ss_pred cCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHH-
Q psy16310 225 DENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQL- 303 (1493)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~- 303 (1493)
....++++|||+||++||.|+++.+..++...++.+..++|+......+
T Consensus 94 ------------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (245)
T 3dkp_A 94 ------------------------------PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFG 143 (245)
T ss_dssp ------------------------------CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTS
T ss_pred ------------------------------cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhh
Confidence 1134567999999999999999999999988888888887764333222
Q ss_pred HHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhc---CChhhHHHHHHhhccccCCCccccccccC
Q psy16310 304 RILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES---GHFPELKNILDRVTMTETSQPRQTMIESG 380 (1493)
Q Consensus 304 ~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~---~~~~~l~~il~~l~~~~~~~~~~~~~~~~ 380 (1493)
.....+++|+|+||++|.+++....... .+.++++|||||||+++++ +|...+..++..+.
T Consensus 144 ~~~~~~~~I~v~Tp~~l~~~l~~~~~~~-~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~--------------- 207 (245)
T 3dkp_A 144 PKSSKKFDILVTTPNRLIYLLKQDPPGI-DLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACT--------------- 207 (245)
T ss_dssp TTSCCCCCEEEECHHHHHHHHHSSSCSC-CCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCC---------------
T ss_pred hhhcCCCCEEEECHHHHHHHHHhCCCCc-ccccCcEEEEeChHHhcccccccHHHHHHHHHHhcC---------------
Confidence 1234568999999999999998653222 3668999999999999985 56666666665442
Q ss_pred CcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhh
Q psy16310 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLK 421 (1493)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~ 421 (1493)
....|+++||||+|+.+..++...
T Consensus 208 -----------------~~~~~~~~~SAT~~~~v~~~~~~~ 231 (245)
T 3dkp_A 208 -----------------SHKVRRAMFSATFAYDVEQWCKLN 231 (245)
T ss_dssp -----------------CTTCEEEEEESSCCHHHHHHHHHH
T ss_pred -----------------CCCcEEEEEeccCCHHHHHHHHHh
Confidence 345799999999999888776543
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=261.83 Aligned_cols=193 Identities=30% Similarity=0.543 Sum_probs=161.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|+++++++.++++|.+.||..|+++|.++++ .+..++|+++++|||||||++|++|+++.+..
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~-------------- 78 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIP-QAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-------------- 78 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHH-HHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC--------------
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEECCCCCchhhhhhHHHHHhhhc--------------
Confidence 569999999999999999999999999999998 45577899999999999999999999876521
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHHHHHHhcC-
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNK- 308 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~~~~~l~~- 308 (1493)
...++++||++||++|+.|+++.+..+.... ++++..++|+.....+...+..
T Consensus 79 -------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~ 133 (220)
T 1t6n_A 79 -------------------------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 133 (220)
T ss_dssp -------------------------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHS
T ss_pred -------------------------cCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcC
Confidence 1234579999999999999999999998765 7999999999988777666654
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhh-cCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE-SGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~-~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
.++|+|+||++|.+++...... +.++++|||||||++++ .++...+..++..+
T Consensus 134 ~~~i~v~T~~~l~~~~~~~~~~---~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~----------------------- 187 (220)
T 1t6n_A 134 CPHIVVGTPGRILALARNKSLN---LKHIKHFILDECDKMLEQLDMRRDVQEIFRMT----------------------- 187 (220)
T ss_dssp CCSEEEECHHHHHHHHHTTSSC---CTTCCEEEEESHHHHHSSHHHHHHHHHHHHTS-----------------------
T ss_pred CCCEEEeCHHHHHHHHHhCCCC---cccCCEEEEcCHHHHhcccCcHHHHHHHHHhC-----------------------
Confidence 5799999999999998875543 55889999999999987 46667777776544
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 419 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~ 419 (1493)
+...|+++||||+++.+..+..
T Consensus 188 ----------~~~~~~i~~SAT~~~~~~~~~~ 209 (220)
T 1t6n_A 188 ----------PHEKQVMMFSATLSKEIRPVCR 209 (220)
T ss_dssp ----------CSSSEEEEEESCCCTTTHHHHH
T ss_pred ----------CCcCeEEEEEeecCHHHHHHHH
Confidence 3457999999999988776554
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=299.82 Aligned_cols=124 Identities=14% Similarity=0.196 Sum_probs=104.3
Q ss_pred ccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhc-CCCccccccCCCHHHHHHHHHHHhcC-CCe-EEEEe
Q psy16310 528 KHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTML-KCSPLPLHASMNQRQRLKNLDRFRDQ-NNS-ILLAT 601 (1493)
Q Consensus 528 ~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~-~~~~~~lhg~~~~~~R~~vl~~Fr~g-~~~-VLVaT 601 (1493)
..+.|...+..++.. .+.++||||+++..+..+...|... ++.+..+||++++.+|..+++.|++| ... +|+||
T Consensus 322 ~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st 401 (500)
T 1z63_A 322 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 401 (500)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEEC
T ss_pred hcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEec
Confidence 345677777776654 4679999999999999999999875 99999999999999999999999998 555 79999
Q ss_pred chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeE--EEEecCC
Q psy16310 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT--VVLIESD 651 (1493)
Q Consensus 602 dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~--i~l~~~~ 651 (1493)
+++++|+|+|++++||+||+|.|+..|+||+||++|.|..+.+ +.|+..+
T Consensus 402 ~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 402 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred ccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 9999999999999999999999999999999999999987655 4455543
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=300.73 Aligned_cols=339 Identities=14% Similarity=0.118 Sum_probs=205.9
Q ss_pred CChHHHHhhhhhhhc-------------cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHH
Q psy16310 173 TPTKIQSMVMPSALL-------------ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 239 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~-------------~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1493)
.|+|+|.++++.++. .+++.+++++||||||+++ ++++..+..
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~----------------------- 326 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE----------------------- 326 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT-----------------------
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh-----------------------
Confidence 599999999996654 1468999999999999997 666644311
Q ss_pred HHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHh-cCCCCEEEeCcH
Q psy16310 240 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL-NKCPHILVATPG 318 (1493)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l-~~~~~IiV~TP~ 318 (1493)
.....++||||||++|+.|+.+.|..++.. .+.|+.+.......+ ..+++|+|+||+
T Consensus 327 ----------------~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiq 384 (1038)
T 2w00_A 327 ----------------LDFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQ 384 (1038)
T ss_dssp ----------------CTTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHH
T ss_pred ----------------cCCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHH
Confidence 112357999999999999999999887643 123455555555555 356899999999
Q ss_pred HHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCC
Q psy16310 319 RLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETS 398 (1493)
Q Consensus 319 ~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (1493)
+|..++..... ...+....+||+||||++...+ ....|+..+
T Consensus 385 kl~~~l~~~~~-~~~~~~~~lvIiDEAHrs~~~~---~~~~I~~~~---------------------------------- 426 (1038)
T 2w00_A 385 KLNNLMKAESD-LPVYNQQVVFIFDECHRSQFGE---AQKNLKKKF---------------------------------- 426 (1038)
T ss_dssp HHHHHHHHCCC-CGGGGSCEEEEEESCCTTHHHH---HHHHHHHHC----------------------------------
T ss_pred HHHHHHhcccc-hhccccccEEEEEccchhcchH---HHHHHHHhC----------------------------------
Confidence 99998865321 1124467899999999986422 234444433
Q ss_pred CCceEEEEeeccchhhhhhhhhhccccccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhcc----C
Q psy16310 399 QPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKH----D 474 (1493)
Q Consensus 399 ~~~q~il~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 474 (1493)
+..++++||||+........ .. ....+++ ..+.. +.+...+.... +++. .
T Consensus 427 p~a~~lgfTATP~~~~~~~~---------------~~---~t~~~FG---~~i~~----Y~l~~AI~dg~-l~p~~v~y~ 480 (1038)
T 2w00_A 427 KRYYQFGFTGTPIFPENALG---------------SE---TTASVFG---RELHS----YVITDAIRDEK-VLKFKVDYN 480 (1038)
T ss_dssp SSEEEEEEESSCCCSTTCTT---------------SC---CHHHHHC---SEEEE----ECHHHHHHHTS-SCCEEEEEC
T ss_pred CcccEEEEeCCccccccchh---------------hh---HHHHHhC---CeeEe----ecHHHHHhCCC-cCCeEEEEE
Confidence 23689999999974321000 00 0000000 00000 00000000000 0000 0
Q ss_pred -CcchhhHHHHhcCCCcchhhHHHhhhhccCCccccccccccccccccccccccccCchhhHHH-----HHHhh------
Q psy16310 475 -EKDSYLYYFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLY-----YFILQ------ 542 (1493)
Q Consensus 475 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~-----~~l~~------ 542 (1493)
....+ .... ... . .... ... ....... ...+...+. ++...
T Consensus 481 ~v~~~~--~~~~-~e~-d-~~~~---~~i------------------~~~~~l~-~~~ri~~I~~~Il~~~~~~~~~~~~ 533 (1038)
T 2w00_A 481 DVRPQF--KSLE-TET-D-EKKL---SAA------------------ENQQAFL-HPMRIQEITQYILNNFRQKTHRTFP 533 (1038)
T ss_dssp CCCGGG--HHHH-TCC-C-HHHH---HHT------------------CSTTTTT-CHHHHHHHHHHHHHHHHHHTTCSSS
T ss_pred eccchh--hhcc-ccc-c-HHHH---HHH------------------HHHHHhc-CHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 00000 0000 000 0 0000 000 0000001 111222221 12111
Q ss_pred --CCCcEEEEecchhhHHHHHHHHHhcC------------CCc-cccccC----------C----------CHH------
Q psy16310 543 --HPGRTLVFCNSISSVKRLTQLLTMLK------------CSP-LPLHAS----------M----------NQR------ 581 (1493)
Q Consensus 543 --~~~~~IIF~~s~~~a~~L~~~L~~~~------------~~~-~~lhg~----------~----------~~~------ 581 (1493)
.+.++||||+|+..|..++..|...+ +.+ .++||+ + ++.
T Consensus 534 ~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~ 613 (1038)
T 2w00_A 534 GSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLD 613 (1038)
T ss_dssp SCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHH
T ss_pred cCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHH
Confidence 23579999999999999999997654 444 345542 2 322
Q ss_pred -----------------------HHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccC
Q psy16310 582 -----------------------QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 638 (1493)
Q Consensus 582 -----------------------~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~ 638 (1493)
.|..++++|++|+++|||+|+++.+|+|+|.+ +|+.+|.|.+...|+||+||++|.
T Consensus 614 ~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~ 692 (1038)
T 2w00_A 614 AAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRI 692 (1038)
T ss_dssp HHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcC
Confidence 47889999999999999999999999999999 788999999999999999999998
Q ss_pred CCC----CeEEEEec
Q psy16310 639 NNE----GLTVVLIE 649 (1493)
Q Consensus 639 g~~----G~~i~l~~ 649 (1493)
+.. |.++.++.
T Consensus 693 ~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 693 YDATKTFGNIVTFRD 707 (1038)
T ss_dssp CCTTCCSEEEEESSC
T ss_pred CCCCCCcEEEEEccc
Confidence 764 67776664
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-24 Score=262.39 Aligned_cols=134 Identities=16% Similarity=0.190 Sum_probs=111.3
Q ss_pred HCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhh
Q psy16310 785 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 864 (1493)
Q Consensus 785 ~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1493)
-+|| .|||+|..++|. +..|+ |++++||+|||++|++|++...+.
T Consensus 75 ~lG~-~Pt~VQ~~~ip~-LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~------------------------------- 119 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAV-LHEGK--IAEMKTGEGKTLVATLAVALNALT------------------------------- 119 (997)
T ss_dssp HTCC-CCCHHHHHHHHH-HHTTS--EEECCSTHHHHHHHHHHHHHHHTT-------------------------------
T ss_pred HhCC-CCcHHHHhhccc-ccCCc--eeeccCCCchHHHHHHHHHHHHHh-------------------------------
Confidence 3799 999999999995 55665 999999999999999999644322
Q ss_pred cchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHH-HHHHHh
Q psy16310 865 NTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQL 943 (1493)
Q Consensus 865 ~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl-~~~l~~ 943 (1493)
+.+|+||+||++||.|+++.+..++.++++++.+++||.+...... ..++||+||||++| .++|..
T Consensus 120 -----------G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~--ay~~DIvyGTpgrlgfDyLrd 186 (997)
T 2ipc_A 120 -----------GKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRK--AYLADVTYVTNSELGFDYLRD 186 (997)
T ss_dssp -----------CSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHH--HHTSSEEEEEHHHHHHHHHHH
T ss_pred -----------CCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHH--HcCCCEEEECchhhhhHHHHH
Confidence 2359999999999999999999999999999999999998654333 34689999999999 899987
Q ss_pred CcC---cccccc---ceeEEEecccchhc
Q psy16310 944 GHF---HLTELY---KINYLVIDETDRMI 966 (1493)
Q Consensus 944 ~~~---~~~~l~---~l~~lVlDEah~ll 966 (1493)
+.. ....++ .+.++||||||+|+
T Consensus 187 ~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 187 NMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred hhhcchhhcccccCCCcceEEEechHHHH
Confidence 531 112356 79999999999987
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=275.86 Aligned_cols=345 Identities=16% Similarity=0.190 Sum_probs=216.2
Q ss_pred CCcHHHHhhHHHhh--------ccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHH
Q psy16310 790 TPTKIQSMVMPSAL--------LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 861 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l--------~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (1493)
.++|+|.+++..++ ..+...|++.+||+|||+.++..+...+.....
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~------------------------- 109 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD------------------------- 109 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT-------------------------
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc-------------------------
Confidence 68999999997543 345689999999999999977666544321100
Q ss_pred hhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHH--H-HHhcC-----CCcEEEEC
Q psy16310 862 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQ--L-RILNK-----CPHILVAT 933 (1493)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~--~-~~l~~-----~~~IlV~T 933 (1493)
......++|||||+ .|+.|+.+.+.++... .+.+..++||...... . ..+.. ..+|+|+|
T Consensus 110 ----------~~p~~~~~LiV~P~-sll~qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~t 177 (644)
T 1z3i_X 110 ----------CKPEIDKVIVVSPS-SLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIIS 177 (644)
T ss_dssp ----------SSCSCSCEEEEECH-HHHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEE
T ss_pred ----------ccCCCCcEEEEecH-HHHHHHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEee
Confidence 01123469999997 8999999999998644 4666777776543221 1 12221 36899999
Q ss_pred cHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch-HhHHhhh--
Q psy16310 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL-KNSLNLK-- 1010 (1493)
Q Consensus 934 P~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~-~~~~~~~-- 1010 (1493)
++.+..... .+ ....+++||+||||++-... ......+..+ .....+++|||+-..- .+.....
T Consensus 178 y~~l~~~~~--~l---~~~~~~~vI~DEaH~ikn~~--~~~~~al~~l------~~~~rl~LTgTPiqN~l~El~sll~f 244 (644)
T 1z3i_X 178 YETFRLHAE--VL---HKGKVGLVICDEGHRLKNSD--NQTYLALNSM------NAQRRVLISGTPIQNDLLEYFSLVHF 244 (644)
T ss_dssp HHHHHHHTT--TT---TTSCCCEEEETTGGGCCTTC--HHHHHHHHHH------CCSEEEEECSSCSGGGGGGCHHHHHH
T ss_pred HHHHHhhHH--Hh---hcCCccEEEEECceecCChh--hHHHHHHHhc------ccCcEEEEecCcccCCHHHHHHHHHh
Confidence 999865431 11 12357899999999986432 2334444444 2356899999986431 1110000
Q ss_pred -c----cCc------Ccc------cccCCC-------chhHHHHhHh---ccC----------CCcEE-----eccccc-
Q psy16310 1011 -K----GQS------KSK------KVSKGD-------PSIKRLQDLL---NIK----------SPKIV-----DLTEKI- 1047 (1493)
Q Consensus 1011 -~----~~~------~~~------~~~~~~-------~~~~~l~~~~---~~~----------~~~~~-----~~~~~~- 1047 (1493)
. +.. ... ...... ..+..+...+ -+. ++... .+....
T Consensus 245 l~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~ 324 (644)
T 1z3i_X 245 VNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQK 324 (644)
T ss_dssp HHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHH
T ss_pred hCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHH
Confidence 0 000 000 000000 0000000000 000 00000 000000
Q ss_pred ------------------c----------------------------------------ccccceeeEEEecccchhhHH
Q psy16310 1048 ------------------G----------------------------------------ITKTLTESKILCKHDEKDSYL 1069 (1493)
Q Consensus 1048 ------------------~----------------------------------------~~~~~~~~~~~~~~~~k~~~l 1069 (1493)
. ................|...+
T Consensus 325 ~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l 404 (644)
T 1z3i_X 325 ELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVL 404 (644)
T ss_dssp HHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHH
Confidence 0 000000000001112333334
Q ss_pred HHHHH----hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCC---eEEeehhhhcccc
Q psy16310 1070 YYFIL----QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS---ILLATDVAARGLD 1142 (1493)
Q Consensus 1070 ~~~l~----~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~---VLVaTdv~~~GiD 1142 (1493)
..++. ..+.++||||+++..++.+...|...|+.+..+||+|++.+|..++++|++|... +||+|+++++|||
T Consensus 405 ~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Gln 484 (644)
T 1z3i_X 405 DYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLN 484 (644)
T ss_dssp HHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCC
T ss_pred HHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcc
Confidence 33332 2367999999999999999999999999999999999999999999999998764 8999999999999
Q ss_pred CCCccEEEEecCCCChhHHHHHHhccCCCCCCCeE--EEEecCC
Q psy16310 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT--LVLIESD 1184 (1493)
Q Consensus 1143 ip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~--i~l~~~~ 1184 (1493)
++++++||+||+|.++..|.|++||++|.|+...+ +.|+..+
T Consensus 485 l~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 485 LIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp CTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred cccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 99999999999999999999999999999987654 4455554
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-24 Score=273.49 Aligned_cols=127 Identities=21% Similarity=0.220 Sum_probs=113.2
Q ss_pred hhhHHHHHHH---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccc
Q psy16310 1065 KDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141 (1493)
Q Consensus 1065 k~~~l~~~l~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~Gi 1141 (1493)
+...+...+. ..+.++||||+|+..++.++..|...|+.+..+||+|++.+|..+++.|+.|+++|||||+++++|+
T Consensus 424 ~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~Gl 503 (664)
T 1c4o_A 424 QILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGL 503 (664)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTC
T ss_pred hHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCc
Confidence 3444444443 3467999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEecC-----CCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHH
Q psy16310 1142 DIPGIEHVIHYHV-----PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKM 1192 (1493)
Q Consensus 1142 Dip~v~~VI~~d~-----p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~ 1192 (1493)
|+|+|++||++|. |.+..+|+||+|||||.+ .|.+++|+++.+....+.+
T Consensus 504 Dip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i 558 (664)
T 1c4o_A 504 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAI 558 (664)
T ss_dssp CCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHH
T ss_pred cCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHH
Confidence 9999999999997 999999999999999995 8999999998876555444
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=283.69 Aligned_cols=396 Identities=16% Similarity=0.172 Sum_probs=228.4
Q ss_pred CChHHHHhhhhhhh---ccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 173 TPTKIQSMVMPSAL---LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l---~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
.++|||.+++..++ ..+.+.|++.+||+|||++++..+...+...
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-------------------------------- 283 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-------------------------------- 283 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH--------------------------------
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc--------------------------------
Confidence 68999999996332 3678999999999999999766654433221
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH------------hcCCCCEEEeCc
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI------------LNKCPHILVATP 317 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~------------l~~~~~IiV~TP 317 (1493)
.....+||||| ..|+.|+.+.|..++. ++++.+++|+......... ....++|+|+|+
T Consensus 284 -------~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy 353 (800)
T 3mwy_W 284 -------RQNGPHIIVVP-LSTMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTY 353 (800)
T ss_dssp -------SCCSCEEEECC-TTTHHHHHHHHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECT
T ss_pred -------CCCCCEEEEEC-chHHHHHHHHHHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecH
Confidence 12234899999 7888999999998863 5777778887655444332 123468999999
Q ss_pred HHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCC
Q psy16310 318 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397 (1493)
Q Consensus 318 ~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1493)
+.+...... +. -..+++|||||||++- +....+...+..+.
T Consensus 354 ~~l~~~~~~----l~-~~~w~~vIvDEaH~lk--n~~s~~~~~l~~l~-------------------------------- 394 (800)
T 3mwy_W 354 EYILKDRAE----LG-SIKWQFMAVDEAHRLK--NAESSLYESLNSFK-------------------------------- 394 (800)
T ss_dssp THHHHTHHH----HH-TSEEEEEEETTGGGGC--CSSSHHHHHHTTSE--------------------------------
T ss_pred HHHHhhHHH----Hh-cCCcceeehhhhhhhc--CchhHHHHHHHHhh--------------------------------
Confidence 999764321 11 1157899999999983 23334444443331
Q ss_pred CCCceEEEEeeccc-hhhhh---hhhhhcccccc----ccccCCCch-hhhHHhhhhccCCcccchhhh-h-ccccccch
Q psy16310 398 SQPRQTFVFSATLT-HSLKN---SLNLKKGQSKS----KKVSKGDPS-IKRLQDLLNIKSPKIVDLTEK-I-GITKTLTE 466 (1493)
Q Consensus 398 ~~~~q~il~SATl~-~~~~~---~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~ 466 (1493)
....+++|||+- +.+.. ++......... ......... ...+..+.....+.+...... . ...+....
T Consensus 395 --~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~ 472 (800)
T 3mwy_W 395 --VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTE 472 (800)
T ss_dssp --EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEE
T ss_pred --hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEE
Confidence 135688999973 22222 22221111000 000000000 000111111111111000000 0 00000001
Q ss_pred hhhhhccCCcchhhHHHHhcCCC-----------cchhhHHHhhhh-ccCCccccccccccc-------ccccccccccc
Q psy16310 467 SKILCKHDEKDSYLYYFILQHPG-----------RTLCEEIQDLLN-IKSPKIVDLTEKIGI-------TKTLTESKILC 527 (1493)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 527 (1493)
..+.+........+|..+..... ..+...+..+.. ..+|.+......... ...........
T Consensus 473 ~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 552 (800)
T 3mwy_W 473 RILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLI 552 (800)
T ss_dssp EEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhh
Confidence 11111111111111111110000 000000000000 001111100000000 00000001122
Q ss_pred ccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCC---eEEEEe
Q psy16310 528 KHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN---SILLAT 601 (1493)
Q Consensus 528 ~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~---~VLVaT 601 (1493)
..+.|...|..++.. .+.++||||+....+..|..+|...|+.+..+||+++..+|..+++.|++|.. .+|++|
T Consensus 553 ~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt 632 (800)
T 3mwy_W 553 MSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLST 632 (800)
T ss_dssp HTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEH
T ss_pred hcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEec
Confidence 346677777777654 46799999999999999999999999999999999999999999999998655 499999
Q ss_pred chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCC--eEEEEecCC
Q psy16310 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG--LTVVLIESD 651 (1493)
Q Consensus 602 dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G--~~i~l~~~~ 651 (1493)
.++++|||++.+++||+||+|.|+..++||+||+.|.|... .++.|++.+
T Consensus 633 ~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 633 RAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp HHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred ccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 99999999999999999999999999999999999999764 445566554
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.5e-24 Score=278.41 Aligned_cols=338 Identities=17% Similarity=0.185 Sum_probs=218.9
Q ss_pred CCcHHHHhhHHHhh---ccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 790 TPTKIQSMVMPSAL---LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l---~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
.++|+|.+++..++ ..+.+.|++.+||+|||+.++..+...+...
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-------------------------------- 283 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-------------------------------- 283 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH--------------------------------
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc--------------------------------
Confidence 68999999997433 3678999999999999998766554433221
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH------------hcCCCcEEEECc
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI------------LNKCPHILVATP 934 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~------------l~~~~~IlV~TP 934 (1493)
.....+||||| ..|+.|+.+.+.+++ .++++.+.+|+......... ....++|+|+|+
T Consensus 284 -------~~~~~~LIV~P-~sll~qW~~E~~~~~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy 353 (800)
T 3mwy_W 284 -------RQNGPHIIVVP-LSTMPAWLDTFEKWA--PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTY 353 (800)
T ss_dssp -------SCCSCEEEECC-TTTHHHHHHHHHHHS--TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECT
T ss_pred -------CCCCCEEEEEC-chHHHHHHHHHHHHC--CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecH
Confidence 22235899999 678899999999875 34677777776554433322 123568999999
Q ss_pred HHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc-hHhH---Hhhh
Q psy16310 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS-LKNS---LNLK 1010 (1493)
Q Consensus 935 ~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~-~~~~---~~~~ 1010 (1493)
+.+...... + ....+++|||||||++-... ..+...+..+ .....+++|||+-.. +.++ +...
T Consensus 354 ~~l~~~~~~----l-~~~~w~~vIvDEaH~lkn~~--s~~~~~l~~l------~~~~rl~LTgTPiqN~l~el~~ll~fL 420 (800)
T 3mwy_W 354 EYILKDRAE----L-GSIKWQFMAVDEAHRLKNAE--SSLYESLNSF------KVANRMLITGTPLQNNIKELAALVNFL 420 (800)
T ss_dssp THHHHTHHH----H-HTSEEEEEEETTGGGGCCSS--SHHHHHHTTS------EEEEEEEECSCCCSSCSHHHHHHHHHH
T ss_pred HHHHhhHHH----H-hcCCcceeehhhhhhhcCch--hHHHHHHHHh------hhccEEEeeCCcCCCCHHHHHHHHHHh
Confidence 998754321 0 11257899999999985432 3445555544 234678999998522 2221 1111
Q ss_pred ccCcCc----ccccCCCc----hhHHHHhHhccCCCcEEeccccccc--cccceeeEE----------------------
Q psy16310 1011 KGQSKS----KKVSKGDP----SIKRLQDLLNIKSPKIVDLTEKIGI--TKTLTESKI---------------------- 1058 (1493)
Q Consensus 1011 ~~~~~~----~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------------- 1058 (1493)
...... ........ .+..+...+ .+..+........ ........+
T Consensus 421 ~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l---~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~ 497 (800)
T 3mwy_W 421 MPGRFTIDQEIDFENQDEEQEEYIHDLHRRI---QPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSA 497 (800)
T ss_dssp CSCCC---------CCTTHHHHHHHHHHHTT---GGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC-
T ss_pred CccccCchhhhcccccchhHHHHHHHHHHHH---hHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 000000 00000000 011111100 0000000000000 000000000
Q ss_pred -----------------------------------------------------EecccchhhHHHHHHHh---CCCcEEE
Q psy16310 1059 -----------------------------------------------------LCKHDEKDSYLYYFILQ---HPGRTLV 1082 (1493)
Q Consensus 1059 -----------------------------------------------------~~~~~~k~~~l~~~l~~---~~~~~IV 1082 (1493)
......|...+..++.. .+.++||
T Consensus 498 l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLI 577 (800)
T 3mwy_W 498 LTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLI 577 (800)
T ss_dssp ---------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEE
T ss_pred HhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEE
Confidence 00123344445555443 4679999
Q ss_pred EecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCC---CeEEeehhhhccccCCCccEEEEecCCCChh
Q psy16310 1083 FCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN---SILLATDVAARGLDIPGIEHVIHYHVPRTSE 1159 (1493)
Q Consensus 1083 F~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~---~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~ 1159 (1493)
||+.+..++.|...|...|+.+..+||+++..+|..++++|+++.. .+|++|.+++.|||++.+++||+||+|.++.
T Consensus 578 Fsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~ 657 (800)
T 3mwy_W 578 FSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQ 657 (800)
T ss_dssp EESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSH
T ss_pred EechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChh
Confidence 9999999999999999999999999999999999999999998655 4899999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCeE--EEEecCCC
Q psy16310 1160 IYIHRSGRTARANNEGLT--LVLIESDE 1185 (1493)
Q Consensus 1160 ~yiqr~GR~gR~g~~G~~--i~l~~~~e 1185 (1493)
.++||+||+.|.|+...+ +.|++.+-
T Consensus 658 ~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 658 ADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp HHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred hHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 999999999999976544 44566653
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=268.80 Aligned_cols=123 Identities=15% Similarity=0.245 Sum_probs=107.4
Q ss_pred cCchhhHHHHHHhh----CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCC---eEEEEe
Q psy16310 529 HDEKDSYLYYFILQ----HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN---SILLAT 601 (1493)
Q Consensus 529 ~~~k~~~l~~~l~~----~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~---~VLVaT 601 (1493)
.+.|...+..++.. .+.++||||+....+..+...|...++.+..+||+++..+|..+++.|++|.. .+|++|
T Consensus 397 ~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st 476 (644)
T 1z3i_X 397 LSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS 476 (644)
T ss_dssp GSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEG
T ss_pred cChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEec
Confidence 35566666555533 46799999999999999999999999999999999999999999999999876 489999
Q ss_pred chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCC--eEEEEecCC
Q psy16310 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG--LTVVLIESD 651 (1493)
Q Consensus 602 dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G--~~i~l~~~~ 651 (1493)
+++++|||++++++||+||+|.|+..|.|++||++|.|... .++.|++.+
T Consensus 477 ~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 477 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp GGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred ccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 99999999999999999999999999999999999999765 445555554
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-24 Score=231.04 Aligned_cols=163 Identities=26% Similarity=0.456 Sum_probs=134.6
Q ss_pred cCCCcEEeccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHH
Q psy16310 1035 IKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQR 1114 (1493)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~ 1114 (1493)
+.+|..+.+.........+.+.++.+....|...|..++...++++||||+++..++.++..|...|+.+..+||+|++.
T Consensus 12 ~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~ 91 (191)
T 2p6n_A 12 DLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQE 91 (191)
T ss_dssp ----------------CCSEEEEEECCGGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHH
T ss_pred cCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 34455555555555667888999999999999999999988888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCC-CHHHHHHHH
Q psy16310 1115 QRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD-EIPLYIKMF 1193 (1493)
Q Consensus 1115 ~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-e~~~~~~~~ 1193 (1493)
+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.+++|+++. +...+..+.
T Consensus 92 ~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~ 171 (191)
T 2p6n_A 92 ERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLK 171 (191)
T ss_dssp HHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 666666665
Q ss_pred Hhcc
Q psy16310 1194 NSLE 1197 (1493)
Q Consensus 1194 ~~~~ 1197 (1493)
+.+.
T Consensus 172 ~~l~ 175 (191)
T 2p6n_A 172 ALLL 175 (191)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.1e-24 Score=261.30 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=110.5
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
+|+ +||++|..++| .+..|+ |+++.||||||++|++|++...+
T Consensus 76 lG~-~Pt~VQ~~~ip-~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL--------------------------------- 118 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGA-VLHEGK--IAEMKTGEGKTLVATLAVALNAL--------------------------------- 118 (997)
T ss_dssp TCC-CCCHHHHHHHH-HHHTTS--EEECCSTHHHHHHHHHHHHHHHT---------------------------------
T ss_pred hCC-CCcHHHHhhcc-cccCCc--eeeccCCCchHHHHHHHHHHHHH---------------------------------
Confidence 699 99999999999 555665 99999999999999999964332
Q ss_pred chhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~~ 327 (1493)
.+..|+||+||++||.|++.++..++.++++++++++||++...... ..++||+|+||++| .++|..+
T Consensus 119 ---------~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~--ay~~DIvyGTpgrlgfDyLrd~ 187 (997)
T 2ipc_A 119 ---------TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRK--AYLADVTYVTNSELGFDYLRDN 187 (997)
T ss_dssp ---------TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHH--HHTSSEEEEEHHHHHHHHHHHT
T ss_pred ---------hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHH--HcCCCEEEECchhhhhHHHHHh
Confidence 12359999999999999999999999999999999999998554433 34689999999999 8888765
Q ss_pred Cc---cccccc---cccEEEEecCchhhh
Q psy16310 328 HF---HLTELY---KINYLVIDETDRMIE 350 (1493)
Q Consensus 328 ~~---~~~~l~---~i~~lViDEAh~ll~ 350 (1493)
.. ....++ .+.++||||||.||.
T Consensus 188 m~~~~~~l~~r~d~~l~~lIIDEaDsmLi 216 (997)
T 2ipc_A 188 MAISPDQLVLRHDHPLHYAIIDEVDSILI 216 (997)
T ss_dssp SCSSTTTCCSCSSSSSCEEEETTHHHHTT
T ss_pred hhcchhhcccccCCCcceEEEechHHHHH
Confidence 31 112355 789999999999983
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-24 Score=224.09 Aligned_cols=150 Identities=31% Similarity=0.503 Sum_probs=140.7
Q ss_pred cccceeeEEEecccchhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCC
Q psy16310 1050 TKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128 (1493)
Q Consensus 1050 ~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~ 1128 (1493)
...+.+.++.+....|...|..++... ++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 86 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEY 86 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 456788889999999999998888754 6799999999999999999999999999999999999999999999999999
Q ss_pred CeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhcccc
Q psy16310 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1129 ~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~ 1199 (1493)
+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.+++|+.+.+...+.++.+.++..
T Consensus 87 ~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 87 RYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 157 (163)
T ss_dssp SEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSC
T ss_pred eEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998877654
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-23 Score=264.05 Aligned_cols=117 Identities=21% Similarity=0.274 Sum_probs=109.9
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecC-
Q psy16310 543 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV- 621 (1493)
Q Consensus 543 ~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~- 621 (1493)
.+.++||||+|+..++.|+..|...++.+..+||+|++.+|..+++.|+.|+++|||||+++++|+|+|+|++||+||.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 622 ----PRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 622 ----P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|.+..+|+||+|||||.| .|.|++++++.+......+.
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 999999999999999996 89999999888776665553
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=259.69 Aligned_cols=115 Identities=23% Similarity=0.309 Sum_probs=108.2
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecC-
Q psy16310 1076 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV- 1154 (1493)
Q Consensus 1076 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~- 1154 (1493)
.+.++||||+|+..++.++..|...|+.+..+||+|++.+|..+++.|+.|+++|||||+++++|+|+|+|++||++|.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHH
Q psy16310 1155 ----PRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIK 1191 (1493)
Q Consensus 1155 ----p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~ 1191 (1493)
|.+..+|+||+|||||. ..|.+++|+++.+......
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~ 563 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIA 563 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHH
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHH
Confidence 99999999999999998 7899999999887654443
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=230.41 Aligned_cols=154 Identities=31% Similarity=0.465 Sum_probs=138.4
Q ss_pred ceeeEEEecccchhhHHHHHHHh-CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeE
Q psy16310 1053 LTESKILCKHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131 (1493)
Q Consensus 1053 ~~~~~~~~~~~~k~~~l~~~l~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VL 1131 (1493)
+.+..+.+....|...+..++.. .++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+||
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 34556677888999999888765 47899999999999999999999999999999999999999999999999999999
Q ss_pred EeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCC
Q psy16310 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1206 (1493)
Q Consensus 1132 VaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p 1206 (1493)
|||+++++|+|+|++++||+||+|.+...|+||+|||||.|+.|.|++|+++.+...+..+.+.++..+.....|
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 160 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 160 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCC
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998887665433333
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.1e-24 Score=225.49 Aligned_cols=152 Identities=28% Similarity=0.516 Sum_probs=136.6
Q ss_pred ccccceeeEEEecccc-hhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC
Q psy16310 1049 ITKTLTESKILCKHDE-KDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126 (1493)
Q Consensus 1049 ~~~~~~~~~~~~~~~~-k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g 1126 (1493)
....+.+.++.+.... |...+..++... ++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 3457888888888765 888888888765 57899999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeehhhhccccCCCccEEEEecCC------CChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1127 NNSILLATDVAARGLDIPGIEHVIHYHVP------RTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1127 ~~~VLVaTdv~~~GiDip~v~~VI~~d~p------~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
+.+|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.+++|+++.+...+..+.+.++..+
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999 999999999999999999999999999999999999988877543
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=222.94 Aligned_cols=150 Identities=25% Similarity=0.470 Sum_probs=136.8
Q ss_pred cccceeeEEEecccchhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCC
Q psy16310 1050 TKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 1128 (1493)
Q Consensus 1050 ~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~ 1128 (1493)
...+.+.++.+....|...+..++... ++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 456788889999999999999988765 5789999999999999999999999999999999999999999999999999
Q ss_pred CeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCC-CHHHHHHHHHhcccc
Q psy16310 1129 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESD-EIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1129 ~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-e~~~~~~~~~~~~~~ 1199 (1493)
+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.+++|+++. +...+..+.+.++..
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVN 154 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCC
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999876 456677777766543
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-23 Score=219.53 Aligned_cols=148 Identities=24% Similarity=0.415 Sum_probs=132.9
Q ss_pred cceeeEEEecccc-hhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCC
Q psy16310 1052 TLTESKILCKHDE-KDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS 1129 (1493)
Q Consensus 1052 ~~~~~~~~~~~~~-k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~ 1129 (1493)
.+.+.++.+...+ |...+..++... ++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 4677788888777 999988888765 57899999999999999999999999999999999999999999999999999
Q ss_pred eEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhcccc
Q psy16310 1130 ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1130 VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~ 1199 (1493)
|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.+++|+++.+...+..+.+.++..
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQ 152 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCC
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999999999999999999999988877654
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=225.08 Aligned_cols=151 Identities=30% Similarity=0.504 Sum_probs=127.4
Q ss_pred cccccceeeEEEecccchhhHHHHHHHhC--CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhc
Q psy16310 1048 GITKTLTESKILCKHDEKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125 (1493)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~ 1125 (1493)
....++.+.++.+....|...|..++... ++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 45667889999999999999999998876 5789999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccc
Q psy16310 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1198 (1493)
Q Consensus 1126 g~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~ 1198 (1493)
|+++|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++.+...+..+.+.+..
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 167 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 167 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998888888777654
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-23 Score=236.58 Aligned_cols=154 Identities=31% Similarity=0.465 Sum_probs=137.4
Q ss_pred ceeeEEEecccchhhHHHHHHHh-CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeE
Q psy16310 1053 LTESKILCKHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131 (1493)
Q Consensus 1053 ~~~~~~~~~~~~k~~~l~~~l~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VL 1131 (1493)
+.+.++.+....|...+..++.. .++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+||
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vL 82 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVL 82 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEE
Confidence 46777888899999999888765 47899999999999999999999999999999999999999999999999999999
Q ss_pred EeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCC
Q psy16310 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1206 (1493)
Q Consensus 1132 VaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p 1206 (1493)
|||+++++|+|+|++++||+||+|.+...|+||+|||||.|+.|.|++|+++.+...+..+.+.++..+.....|
T Consensus 83 VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~ 157 (300)
T 3i32_A 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 157 (300)
T ss_dssp EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCC
T ss_pred EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999887765433333
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-23 Score=217.27 Aligned_cols=142 Identities=32% Similarity=0.529 Sum_probs=131.4
Q ss_pred cccccccccccCchhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeE
Q psy16310 519 TLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 597 (1493)
Q Consensus 519 ~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~V 597 (1493)
.+....+.+..+.|...|..++... ++++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|
T Consensus 9 ~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~v 88 (163)
T 2hjv_A 9 NIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRY 88 (163)
T ss_dssp CEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred cceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeE
Confidence 4556667777888999999888764 569999999999999999999999999999999999999999999999999999
Q ss_pred EEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 598 LVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
||||+++++|+|+|++++||+||+|.++..|+||+||+||.|..|.|++|+++.+...+..+.
T Consensus 89 lv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~ 151 (163)
T 2hjv_A 89 LVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIE 151 (163)
T ss_dssp EEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHH
T ss_pred EEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998887777664
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-23 Score=222.45 Aligned_cols=142 Identities=29% Similarity=0.547 Sum_probs=127.5
Q ss_pred ccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeE
Q psy16310 518 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 597 (1493)
Q Consensus 518 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~V 597 (1493)
..+......+....|...|..++...++++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|
T Consensus 28 ~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~v 107 (191)
T 2p6n_A 28 LDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 107 (191)
T ss_dssp CCSEEEEEECCGGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSE
T ss_pred cCceEEEEEcChHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEE
Confidence 44556666777888999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred EEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCC-cchhhhhh
Q psy16310 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESD-EIPLKTKF 659 (1493)
Q Consensus 598 LVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~-e~~~~~~l 659 (1493)
||||+++++|+|+|++++||+||+|.++..|+||+|||||.|..|.|++|+++. +......+
T Consensus 108 LvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l 170 (191)
T 2p6n_A 108 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDL 170 (191)
T ss_dssp EEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHH
T ss_pred EEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876 44444444
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-23 Score=224.82 Aligned_cols=139 Identities=34% Similarity=0.507 Sum_probs=126.4
Q ss_pred ccccccccCchhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEE
Q psy16310 522 ESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600 (1493)
Q Consensus 522 ~~~~~~~~~~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVa 600 (1493)
...+.+..+.|...|..++... ++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+||||
T Consensus 8 ~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlva 87 (212)
T 3eaq_A 8 EEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVA 87 (212)
T ss_dssp CEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEE
T ss_pred eeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEe
Confidence 3445667788999999888754 689999999999999999999999999999999999999999999999999999999
Q ss_pred echhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 601 Tdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|+++++|+|+|+|++||+||+|.++..|+||+|||||.|++|.|++|+++.+...+..+.
T Consensus 88 T~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~ 147 (212)
T 3eaq_A 88 TDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALE 147 (212)
T ss_dssp CTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHH
T ss_pred cChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998877666553
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=250.02 Aligned_cols=117 Identities=22% Similarity=0.316 Sum_probs=109.8
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecC-
Q psy16310 543 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHV- 621 (1493)
Q Consensus 543 ~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~- 621 (1493)
.+.++||||+|+..++.|+..|...|+.+..+||+|++.+|..+++.|+.|++.|||||+++++|+|+|+|++||+||.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 622 ----PRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 622 ----P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|.+..+|+||+|||||. ..|.|++++++.+......+.
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 99999999999999998 689999999988776665553
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.88 E-value=6.8e-23 Score=216.72 Aligned_cols=134 Identities=27% Similarity=0.511 Sum_probs=125.0
Q ss_pred cccccccccccCchhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeE
Q psy16310 519 TLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 597 (1493)
Q Consensus 519 ~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~V 597 (1493)
.+.+.++.+..+.|...|..++... .+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|
T Consensus 5 ~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~v 84 (172)
T 1t5i_A 5 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRI 84 (172)
T ss_dssp CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred CeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcE
Confidence 4455666777788999999988776 468999999999999999999999999999999999999999999999999999
Q ss_pred EEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 598 LVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
||||+++++|+|+|++++||+||+|.++..|+||+|||||.|..|.|++|+++.+
T Consensus 85 LvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 85 LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 139 (172)
T ss_dssp EEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHH
T ss_pred EEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChh
Confidence 9999999999999999999999999999999999999999999999999998753
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.9e-23 Score=218.69 Aligned_cols=145 Identities=31% Similarity=0.508 Sum_probs=120.2
Q ss_pred cccccccccccccCchhhHHHHHHhhC--CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCC
Q psy16310 517 TKTLTESKILCKHDEKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 594 (1493)
Q Consensus 517 ~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~ 594 (1493)
...+...+..+..+.|...|..++... ++++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+
T Consensus 17 ~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~ 96 (185)
T 2jgn_A 17 SENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 96 (185)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS
T ss_pred CCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC
Confidence 445666677778888999999999876 578999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 595 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 595 ~~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
.+|||||+++++|+|+|++++||+||+|.++..|+||+|||||.|..|.|++|+++.+...+..+..
T Consensus 97 ~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 163 (185)
T 2jgn_A 97 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 163 (185)
T ss_dssp SSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHH
T ss_pred CeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998877766643
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.9e-23 Score=216.98 Aligned_cols=141 Identities=30% Similarity=0.526 Sum_probs=124.4
Q ss_pred cccccccccccCc-hhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCe
Q psy16310 519 TLTESKILCKHDE-KDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS 596 (1493)
Q Consensus 519 ~~~~~~~~~~~~~-k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~ 596 (1493)
.+.+.++.+.... |...|..++... ++++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+
T Consensus 7 ~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~ 86 (175)
T 2rb4_A 7 NIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK 86 (175)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS
T ss_pred CceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe
Confidence 4555566666544 888888888765 57899999999999999999999999999999999999999999999999999
Q ss_pred EEEEechhhccCCCCCCcEEEEecCC------CChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 597 ILLATDVAARGLDIPGIEHVIHYHVP------RTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 597 VLVaTdv~~rGlDip~v~~VI~yd~P------~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
|||||+++++|+|+|++++||+||+| .+...|+||+|||||.|..|.|++|+++.+...+..+
T Consensus 87 vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i 155 (175)
T 2rb4_A 87 VLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKI 155 (175)
T ss_dssp EEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHH
T ss_pred EEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999999999887665555
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=213.20 Aligned_cols=140 Identities=26% Similarity=0.448 Sum_probs=122.5
Q ss_pred cccccccccCc-hhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEE
Q psy16310 521 TESKILCKHDE-KDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598 (1493)
Q Consensus 521 ~~~~~~~~~~~-k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VL 598 (1493)
.+.++.+.... |...|..++... ++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+||
T Consensus 5 ~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 84 (165)
T 1fuk_A 5 KQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRIL 84 (165)
T ss_dssp EEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred EEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEE
Confidence 34445555555 888888888765 5789999999999999999999999999999999999999999999999999999
Q ss_pred EEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 599 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 599 VaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
|||+++++|+|+|++++||+||+|.++..|+||+|||||.|..|.|++|+++.+...+..+.
T Consensus 85 v~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~ 146 (165)
T 1fuk_A 85 ISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELE 146 (165)
T ss_dssp EEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHH
T ss_pred EEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998877666553
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-22 Score=229.58 Aligned_cols=139 Identities=34% Similarity=0.506 Sum_probs=123.9
Q ss_pred cccccccccCchhhHHHHHHhh-CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEE
Q psy16310 521 TESKILCKHDEKDSYLYYFILQ-HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL 599 (1493)
Q Consensus 521 ~~~~~~~~~~~k~~~l~~~l~~-~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLV 599 (1493)
....+.+..+.|...|..++.. .++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||
T Consensus 4 ~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLV 83 (300)
T 3i32_A 4 EEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLV 83 (300)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEE
Confidence 3455667778899999988865 468999999999999999999999999999999999999999999999999999999
Q ss_pred EechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 600 ATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 600 aTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
||+++++|+|+|+|++||+||+|.+...|+||+|||||+|++|.|++|+++.+...+..+
T Consensus 84 aT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~i 143 (300)
T 3i32_A 84 ATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEAL 143 (300)
T ss_dssp ECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHH
T ss_pred EechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887766555
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-23 Score=221.66 Aligned_cols=148 Identities=30% Similarity=0.493 Sum_probs=133.2
Q ss_pred ceeeEEEecc-cchhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCe
Q psy16310 1053 LTESKILCKH-DEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130 (1493)
Q Consensus 1053 ~~~~~~~~~~-~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~V 1130 (1493)
+.+.++.+.. ..|...+..++... ++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~v 83 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 83 (170)
Confidence 4455566666 67777777777654 568999999999999999999999999999999999999999999999999999
Q ss_pred EEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1131 LVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.+++|+++.+...+..+.+.++..+
T Consensus 84 LvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (170)
T 2yjt_D 84 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 153 (170)
Confidence 9999999999999999999999999999999999999999999999999999999888888877665543
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-22 Score=214.38 Aligned_cols=138 Identities=32% Similarity=0.514 Sum_probs=125.1
Q ss_pred cccccc-CchhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEe
Q psy16310 524 KILCKH-DEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 601 (1493)
Q Consensus 524 ~~~~~~-~~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaT 601 (1493)
+..+.. +.|...|..++... ++++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|||||
T Consensus 8 ~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT 87 (170)
T 2yjt_D 8 YYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 87 (170)
Confidence 344444 66777777777664 4689999999999999999999999999999999999999999999999999999999
Q ss_pred chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 602 dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
+++++|+|+|++++||+||+|.++..|+||+|||||.|..|.|++++++.+...+..+..
T Consensus 88 ~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 147 (170)
T 2yjt_D 88 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 147 (170)
Confidence 999999999999999999999999999999999999999999999999988777666643
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-20 Score=232.66 Aligned_cols=107 Identities=13% Similarity=0.178 Sum_probs=67.6
Q ss_pred HHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEE--eehhhhccccCCC--
Q psy16310 1070 YYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL--ATDVAARGLDIPG-- 1145 (1493)
Q Consensus 1070 ~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLV--aTdv~~~GiDip~-- 1145 (1493)
..++...++.+|||++|...++.++..|.. .. ...+|.. ..|..+++.|+.+. .||+ ||+.+++|||+|+
T Consensus 377 ~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~ 450 (540)
T 2vl7_A 377 KRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKE 450 (540)
T ss_dssp HHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC--------------
T ss_pred HHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCc
Confidence 334445688999999999999999988864 22 3345553 46889999999864 6777 8899999999997
Q ss_pred --ccEEEEecCCCC-h-----------------------------hHHHHHHhccCCCCCCCeEEEEec
Q psy16310 1146 --IEHVIHYHVPRT-S-----------------------------EIYIHRSGRTARANNEGLTLVLIE 1182 (1493)
Q Consensus 1146 --v~~VI~~d~p~s-~-----------------------------~~yiqr~GR~gR~g~~G~~i~l~~ 1182 (1493)
+++||++++|.. + ..+.|.+||+-|....--++++++
T Consensus 451 ~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD 519 (540)
T 2vl7_A 451 NLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCD 519 (540)
T ss_dssp -CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEES
T ss_pred ccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEc
Confidence 899999999832 1 124588999999854333344443
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=225.23 Aligned_cols=108 Identities=14% Similarity=0.166 Sum_probs=68.6
Q ss_pred hHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEE--EechhhccCCCC
Q psy16310 534 SYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILL--ATDVAARGLDIP 611 (1493)
Q Consensus 534 ~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLV--aTdv~~rGlDip 611 (1493)
..+..++...++++|||++|+...+.++..|.. .. ...+|.. ..|..+++.|+.|. .||+ ||..+++|||+|
T Consensus 374 ~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~ 447 (540)
T 2vl7_A 374 ILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFR 447 (540)
T ss_dssp HHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC-----------
T ss_pred HHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecC
Confidence 345555566688999999999999999987764 22 2344443 46788999999865 6777 889999999999
Q ss_pred C----CcEEEEecCCCC-h-----------------------------HHHHHHHhccccCCCC-CeEEEEe
Q psy16310 612 G----IEHVIHYHVPRT-S-----------------------------EIYIHRSGRTARANNE-GLTVVLI 648 (1493)
Q Consensus 612 ~----v~~VI~yd~P~s-~-----------------------------~~yiQR~GRagR~g~~-G~~i~l~ 648 (1493)
+ +++||++++|.. + ..+.|.+||+-|.... |. ++++
T Consensus 448 ~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~-v~ll 518 (540)
T 2vl7_A 448 EKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVK-IYLC 518 (540)
T ss_dssp ----CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCE-EEEE
T ss_pred CCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEE-EEEE
Confidence 8 899999999822 1 2235899999997544 54 4444
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-20 Score=206.41 Aligned_cols=175 Identities=17% Similarity=0.067 Sum_probs=118.5
Q ss_pred CCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 786 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 786 ~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
.+...|+|+|.++++.++ .++++++++|||+|||++|+++++..+....
T Consensus 29 ~~~~~l~~~Q~~~i~~~~-~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~------------------------------ 77 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPAL-EGKNIIICLPTGSGKTRVAVYIAKDHLDKKK------------------------------ 77 (216)
T ss_dssp SCCCCCCHHHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHHHHHHH------------------------------
T ss_pred cCCCCchHHHHHHHHHHh-cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcc------------------------------
Confidence 355689999999998554 6789999999999999999999987764321
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHH-HHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhC
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQ-VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 944 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q-~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~ 944 (1493)
....+.++||++||++|+.| +.+.+..+... ++++..++|+.........+...++|+|+||++|...+...
T Consensus 78 ------~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~ 150 (216)
T 3b6e_A 78 ------KASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNL 150 (216)
T ss_dssp ------HTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-
T ss_pred ------cccCCCcEEEEECHHHHHHHHHHHHHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhcc
Confidence 11235579999999999999 77888887654 67888888876544333333345799999999999988764
Q ss_pred cCc---cccccceeEEEecccchhccCCChhHHHHHH-HHh-c-------ccCCCCCceEEEEecc
Q psy16310 945 HFH---LTELYKINYLVIDETDRMIESGHFPELKNIL-DRV-T-------MTETSQPRQTFVFSAT 998 (1493)
Q Consensus 945 ~~~---~~~l~~l~~lVlDEah~ll~~~~~~~l~~il-~~l-~-------~~~~~~~~q~ll~SAT 998 (1493)
... ...+.++++|||||||++...+++..+...+ ... . .....+..+++++|||
T Consensus 151 ~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 151 ENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp ------CCCGGGCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred CcccccccchhcccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 310 1235678999999999998877766653322 111 0 0112256799999998
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.5e-20 Score=203.24 Aligned_cols=152 Identities=18% Similarity=0.079 Sum_probs=107.1
Q ss_pred CCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhc
Q psy16310 169 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 248 (1493)
Q Consensus 169 ~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1493)
.....|+++|.++++. +..++++++++|||+|||++|++++++.+....
T Consensus 29 ~~~~~l~~~Q~~~i~~-~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~------------------------------ 77 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQP-ALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKK------------------------------ 77 (216)
T ss_dssp SCCCCCCHHHHHHHHH-HHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHH------------------------------
T ss_pred cCCCCchHHHHHHHHH-HhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcc------------------------------
Confidence 3455799999999985 456789999999999999999999987764321
Q ss_pred chhhhhcccCceEEEEEcccHHHHHH-HHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcC
Q psy16310 249 TTEFVKKTRNKLYALILAPTRELAIQ-VQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLG 327 (1493)
Q Consensus 249 ~~~~~~~~~~~~~aLiL~PTreLa~Q-i~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~ 327 (1493)
....+.++||++||++|+.| +.+.+..+... ++++..++|+......+..+...++|+|+||+.|.+.+...
T Consensus 78 ------~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~ 150 (216)
T 3b6e_A 78 ------KASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNL 150 (216)
T ss_dssp ------HTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-
T ss_pred ------cccCCCcEEEEECHHHHHHHHHHHHHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhcc
Confidence 11234679999999999999 77788887654 68888888886654444444456799999999999988764
Q ss_pred Ccc---ccccccccEEEEecCchhhhcCChhhHH
Q psy16310 328 HFH---LTELYKINYLVIDETDRMIESGHFPELK 358 (1493)
Q Consensus 328 ~~~---~~~l~~i~~lViDEAh~ll~~~~~~~l~ 358 (1493)
... ...+.++++|||||||++.+.+++..+.
T Consensus 151 ~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 151 ENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 184 (216)
T ss_dssp ------CCCGGGCSEEEETTC-------CHHHHH
T ss_pred CcccccccchhcccEEEEECchhhccCCcHHHHH
Confidence 310 1235578999999999998777766553
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=209.33 Aligned_cols=133 Identities=17% Similarity=0.035 Sum_probs=102.9
Q ss_pred CCCCCcHHHHhhHHH---hhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhh
Q psy16310 787 GFKTPTKIQSMVMPS---ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 863 (1493)
Q Consensus 787 g~~~pt~iQ~~~i~~---~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1493)
|| .|+|.|.+++.. ++..|++++++||||+|||++|++|++..
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~--------------------------------- 46 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV--------------------------------- 46 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH---------------------------------
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC---------------------------------
Confidence 44 689999997763 45678999999999999999999999851
Q ss_pred hcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCC----------------------------
Q psy16310 864 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMS---------------------------- 915 (1493)
Q Consensus 864 ~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~---------------------------- 915 (1493)
+.+++|++||++|+.|+.+.+..+....++++..+.|+..
T Consensus 47 ------------~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~ 114 (551)
T 3crv_A 47 ------------KPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEV 114 (551)
T ss_dssp ------------CSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCC
T ss_pred ------------CCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccc
Confidence 2379999999999999999999988777888888877421
Q ss_pred -----HHHHH------------------HHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhcc
Q psy16310 916 -----TEKQL------------------RILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE 967 (1493)
Q Consensus 916 -----~~~~~------------------~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~ 967 (1493)
...+. +.....+||||+||+.|.+...+.... ......++||||||+|.+
T Consensus 115 g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~--~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 115 KTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFID--IDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp CCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSC--CCSTTEEEEETTGGGGGG
T ss_pred cccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcC--CCcCCeEEEEecccchHH
Confidence 11111 222346799999999999886554322 123567999999999877
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-19 Score=196.40 Aligned_cols=173 Identities=17% Similarity=0.207 Sum_probs=124.4
Q ss_pred CHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHH
Q psy16310 776 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEV 855 (1493)
Q Consensus 776 ~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 855 (1493)
++.+.+.+...+...++++|.++++ .+..|++++++||||||||++|.++++..+....
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~-~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-------------------- 105 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILE-AISQNSVVIIRGATGCGKTTQVPQFILDDFIQND-------------------- 105 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHH-HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT--------------------
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHH-HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC--------------------
Confidence 4444444444445567999999998 5668899999999999999999999887664321
Q ss_pred HHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhC-CCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECc
Q psy16310 856 LEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK-YTPVKVACVVGGMSTEKQLRILNKCPHILVATP 934 (1493)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~-~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP 934 (1493)
...+.++++++||++|+.|+++.+..... ..+..++.-..... ......++|+|+||
T Consensus 106 -----------------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tp 163 (235)
T 3llm_A 106 -----------------RAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTV 163 (235)
T ss_dssp -----------------CGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEH
T ss_pred -----------------CCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECH
Confidence 12345799999999999999988876432 33444443222110 01113578999999
Q ss_pred HHHHHHHHhCcCccccccceeEEEecccchh-ccCCCh-hHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRM-IESGHF-PELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 935 ~rl~~~l~~~~~~~~~l~~l~~lVlDEah~l-l~~~~~-~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
|+|.+++.. .+.++++|||||||++ ++.+|. ..+..++... ++.|+++||||++...
T Consensus 164 g~l~~~l~~------~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~------~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 164 GVLLRKLEA------GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY------PEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHHH------CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC------TTSEEEEEECSSCCHH
T ss_pred HHHHHHHHh------hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC------CCCeEEEEecCCCHHH
Confidence 999999875 2678999999999986 676665 3455555543 4689999999998665
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-18 Score=191.22 Aligned_cols=173 Identities=17% Similarity=0.207 Sum_probs=122.0
Q ss_pred CHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHH
Q psy16310 159 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEV 238 (1493)
Q Consensus 159 ~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1493)
++.+.+.+.......++++|.++++ .+..|++++++||||||||.++.++++..+....
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~-~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-------------------- 105 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILE-AISQNSVVIIRGATGCGKTTQVPQFILDDFIQND-------------------- 105 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHH-HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT--------------------
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHH-HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC--------------------
Confidence 4444444444445568999999998 6778899999999999999999999887664311
Q ss_pred HHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcC-CCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCc
Q psy16310 239 LEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGK-YTPVKVACVVGGMSTEKQLRILNKCPHILVATP 317 (1493)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~-~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP 317 (1493)
...+.++++++||++|+.|+.+.+..... ..+..++.-..... .....+++|+||||
T Consensus 106 -----------------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tp 163 (235)
T 3llm_A 106 -----------------RAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTV 163 (235)
T ss_dssp -----------------CGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEH
T ss_pred -----------------CCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECH
Confidence 12345799999999999999888765432 33344433222110 00113468999999
Q ss_pred HHHHHHHHcCCccccccccccEEEEecCchh-hhcCCh-hhHHHHHHhhccccCCCccccccccCCcchhhhhhhhcccc
Q psy16310 318 GRLWEFIQLGHFHLTELYKINYLVIDETDRM-IESGHF-PELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395 (1493)
Q Consensus 318 ~~L~~~l~~~~~~~~~l~~i~~lViDEAh~l-l~~~~~-~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1493)
|+|.+++.. .+.++++|||||||++ +++++. ..+..++...
T Consensus 164 g~l~~~l~~------~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~------------------------------- 206 (235)
T 3llm_A 164 GVLLRKLEA------GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY------------------------------- 206 (235)
T ss_dssp HHHHHHHHH------CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHh------hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-------------------------------
Confidence 999999875 2568999999999986 666665 3444444322
Q ss_pred CCCCCceEEEEeeccchhh
Q psy16310 396 ETSQPRQTFVFSATLTHSL 414 (1493)
Q Consensus 396 ~~~~~~q~il~SATl~~~~ 414 (1493)
+..|+++||||++...
T Consensus 207 ---~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 207 ---PEVRIVLMSATIDTSM 222 (235)
T ss_dssp ---TTSEEEEEECSSCCHH
T ss_pred ---CCCeEEEEecCCCHHH
Confidence 2469999999998654
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-17 Score=204.74 Aligned_cols=133 Identities=17% Similarity=0.052 Sum_probs=102.7
Q ss_pred CCCCChHHHHhhhh---hhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhh
Q psy16310 170 GFKTPTKIQSMVMP---SALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEES 246 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~---~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1493)
|| .|+|+|.+++. .++..++++++.||||+|||++|++|++.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---------------------------------- 45 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---------------------------------- 45 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH----------------------------------
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh----------------------------------
Confidence 45 69999999765 34567899999999999999999999984
Q ss_pred hcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCC----------------------------
Q psy16310 247 ANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMS---------------------------- 298 (1493)
Q Consensus 247 ~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~---------------------------- 298 (1493)
.+.+++|++||++|+.|+.+.+..+....++++..+.|...
T Consensus 46 -----------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~ 114 (551)
T 3crv_A 46 -----------VKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEV 114 (551)
T ss_dssp -----------HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCC
T ss_pred -----------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccc
Confidence 12479999999999999999999988777888888877321
Q ss_pred -----HHHHH------------------HHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhh
Q psy16310 299 -----TEKQL------------------RILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIE 350 (1493)
Q Consensus 299 -----~~~~~------------------~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~ 350 (1493)
....+ ......++|||+|++.|.+.+....... .....+|||||||+|.+
T Consensus 115 g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~~--~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 115 KTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFIDI--DLREYMIVIDEAHNLDK 187 (551)
T ss_dssp CCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSCC--CSTTEEEEETTGGGGGG
T ss_pred cccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcCC--CcCCeEEEEecccchHH
Confidence 11111 2223467999999999998765443221 23678999999999987
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-18 Score=198.69 Aligned_cols=155 Identities=16% Similarity=0.169 Sum_probs=119.6
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..|+|+|.++++.++.+ .+.++++|||+|||+++++++...+..
T Consensus 112 ~~l~~~Q~~ai~~~l~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~----------------------------------- 155 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLEN----------------------------------- 155 (282)
T ss_dssp CCCCHHHHHHHHHHHHH-SEEEECCCTTSCHHHHHHHHHHHHHHH-----------------------------------
T ss_pred cCccHHHHHHHHHHHhc-CCeEEEcCCCCCcHHHHHHHHHHHHHc-----------------------------------
Confidence 38999999999966644 678889999999999998887765421
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCcc
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~ 948 (1493)
...++|||+||++|+.|+++.+.+++...+..+..++||..... ......+|+|+||+++.... .
T Consensus 156 ------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~------~ 220 (282)
T 1rif_A 156 ------YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP------K 220 (282)
T ss_dssp ------CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC------G
T ss_pred ------CCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH------H
Confidence 12369999999999999999999998777778888888765332 12245799999999874321 1
Q ss_pred ccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 949 ~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..+.++++||+||||++.. ..+..++..+ ....+++++|||+++..
T Consensus 221 ~~~~~~~~vIiDEaH~~~~----~~~~~il~~~-----~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 221 EWFSQFGMMMNDECHLATG----KSISSIISGL-----NNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp GGGGGEEEEEEETGGGCCH----HHHHHHTTTC-----TTCCEEEEECSSCCTTS
T ss_pred HHHhhCCEEEEECCccCCc----ccHHHHHHHh-----hcCCeEEEEeCCCCCcc
Confidence 2356789999999999874 3566666655 24689999999998653
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.9e-18 Score=194.92 Aligned_cols=155 Identities=16% Similarity=0.180 Sum_probs=117.3
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.|+++|.++++.++. +.+.++++|||||||++|++++...+..
T Consensus 113 ~l~~~Q~~ai~~~l~-~~~~ll~~~tGsGKT~~~~~~~~~~~~~------------------------------------ 155 (282)
T 1rif_A 113 EPHWYQKDAVFEGLV-NRRRILNLPTSAGRSLIQALLARYYLEN------------------------------------ 155 (282)
T ss_dssp CCCHHHHHHHHHHHH-HSEEEECCCTTSCHHHHHHHHHHHHHHH------------------------------------
T ss_pred CccHHHHHHHHHHHh-cCCeEEEcCCCCCcHHHHHHHHHHHHHc------------------------------------
Confidence 799999999986554 4678889999999999998887765521
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcccc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~ 332 (1493)
.+.++|||+||++|+.|+.+.+..++...+..+..++|+..... ......+|+|+||+.|.... . .
T Consensus 156 -----~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~-----~-~ 221 (282)
T 1rif_A 156 -----YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP-----K-E 221 (282)
T ss_dssp -----CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC-----G-G
T ss_pred -----CCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH-----H-H
Confidence 12369999999999999999999987766778888888765432 22345799999999874321 1 2
Q ss_pred ccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccch
Q psy16310 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 412 (1493)
Q Consensus 333 ~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~ 412 (1493)
.+.++++||+||||++.. +.+..++..+ ....++++||||+++
T Consensus 222 ~~~~~~~vIiDEaH~~~~----~~~~~il~~~---------------------------------~~~~~~l~lSATp~~ 264 (282)
T 1rif_A 222 WFSQFGMMMNDECHLATG----KSISSIISGL---------------------------------NNCMFKFGLSGSLRD 264 (282)
T ss_dssp GGGGEEEEEEETGGGCCH----HHHHHHTTTC---------------------------------TTCCEEEEECSSCCT
T ss_pred HHhhCCEEEEECCccCCc----ccHHHHHHHh---------------------------------hcCCeEEEEeCCCCC
Confidence 355789999999999964 3455555433 234799999999986
Q ss_pred hhh
Q psy16310 413 SLK 415 (1493)
Q Consensus 413 ~~~ 415 (1493)
...
T Consensus 265 ~~~ 267 (282)
T 1rif_A 265 GKA 267 (282)
T ss_dssp TST
T ss_pred cch
Confidence 543
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-15 Score=190.63 Aligned_cols=108 Identities=20% Similarity=0.357 Sum_probs=72.8
Q ss_pred HHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeeh--hhhccccCCC--c
Q psy16310 1071 YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD--VAARGLDIPG--I 1146 (1493)
Q Consensus 1071 ~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTd--v~~~GiDip~--v 1146 (1493)
.++...+|.++||++|....+.++..|...+.. ...+|+...|..++++|+ ++..||+||. .+++|||+|+ .
T Consensus 442 ~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l 517 (620)
T 4a15_A 442 DIILKVKKNTIVYFPSYSLMDRVENRVSFEHMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNEL 517 (620)
T ss_dssp HHHHHHCSCEEEEESCHHHHHHHTSSCCSCCEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCC
T ss_pred HHHHhCCCCEEEEeCCHHHHHHHHHHHHhcchh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCce
Confidence 334455899999999999999998887622222 445566678999999999 8899999985 9999999986 6
Q ss_pred cEEEEecCCCC---h--------------------------hHHHHHHhccCCCCCCCeEEEEec
Q psy16310 1147 EHVIHYHVPRT---S--------------------------EIYIHRSGRTARANNEGLTLVLIE 1182 (1493)
Q Consensus 1147 ~~VI~~d~p~s---~--------------------------~~yiqr~GR~gR~g~~G~~i~l~~ 1182 (1493)
.+||...+|-. + ....|-+||+-|.-..--++++++
T Consensus 518 ~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD 582 (620)
T 4a15_A 518 EMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILD 582 (620)
T ss_dssp CEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEEC
T ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEc
Confidence 78999887732 1 112588999999755433444443
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.64 E-value=7e-16 Score=171.82 Aligned_cols=139 Identities=19% Similarity=0.092 Sum_probs=107.1
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..|+|+|.++++.++ .+.++++++|||+|||++++.++...
T Consensus 92 ~~l~~~Q~~ai~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~-------------------------------------- 132 (237)
T 2fz4_A 92 ISLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAINEL-------------------------------------- 132 (237)
T ss_dssp CCCCHHHHHHHHHHT-TTSEEEEEESSSTTHHHHHHHHHHHS--------------------------------------
T ss_pred CCcCHHHHHHHHHHH-hCCCEEEEeCCCCCHHHHHHHHHHHc--------------------------------------
Confidence 589999999998544 56789999999999999988876531
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcE-EEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCc
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK-VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~-v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~ 947 (1493)
+.++||++||++|+.|+.+.+..+ ++. +..+.|+.. ...+|+|+||+.+...+..
T Consensus 133 -------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---- 188 (237)
T 2fz4_A 133 -------STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---- 188 (237)
T ss_dssp -------CSCEEEEESSHHHHHHHHHHHGGG----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH----
T ss_pred -------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH----
Confidence 235999999999999999998873 577 777777653 3569999999998765542
Q ss_pred cccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 948 ~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
....+++|||||||++....+ ..++..+ ...+++++|||+++.
T Consensus 189 --~~~~~~llIiDEaH~l~~~~~----~~i~~~~------~~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 189 --LGNRFMLLIFDEVHHLPAESY----VQIAQMS------IAPFRLGLTATFERE 231 (237)
T ss_dssp --HTTTCSEEEEECSSCCCTTTH----HHHHHTC------CCSEEEEEEESCC--
T ss_pred --hcccCCEEEEECCccCCChHH----HHHHHhc------cCCEEEEEecCCCCC
Confidence 123579999999999876543 4455544 357899999999854
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-15 Score=165.06 Aligned_cols=116 Identities=22% Similarity=0.131 Sum_probs=91.7
Q ss_pred CCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchh
Q psy16310 172 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 251 (1493)
Q Consensus 172 ~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1493)
..|+++|.++++. +..++++++++|||+|||++++.++...
T Consensus 92 ~~l~~~Q~~ai~~-~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------------------------------------- 132 (237)
T 2fz4_A 92 ISLRDYQEKALER-WLVDKRGCIVLPTGSGKTHVAMAAINEL-------------------------------------- 132 (237)
T ss_dssp CCCCHHHHHHHHH-HTTTSEEEEEESSSTTHHHHHHHHHHHS--------------------------------------
T ss_pred CCcCHHHHHHHHH-HHhCCCEEEEeCCCCCHHHHHHHHHHHc--------------------------------------
Confidence 3799999999985 4466789999999999999998876521
Q ss_pred hhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeE-EEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcc
Q psy16310 252 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK-VACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330 (1493)
Q Consensus 252 ~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~-v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~ 330 (1493)
+.++||++||++|+.|+.+.+..+ ++. +..+.|+.. ...+|+|+||+.+...+..
T Consensus 133 -------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---- 188 (237)
T 2fz4_A 133 -------STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---- 188 (237)
T ss_dssp -------CSCEEEEESSHHHHHHHHHHHGGG----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH----
T ss_pred -------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH----
Confidence 235999999999999999998873 567 777777753 2469999999998765542
Q ss_pred ccccccccEEEEecCchhhhcC
Q psy16310 331 LTELYKINYLVIDETDRMIESG 352 (1493)
Q Consensus 331 ~~~l~~i~~lViDEAh~ll~~~ 352 (1493)
+ ..++++|||||||++....
T Consensus 189 ~--~~~~~llIiDEaH~l~~~~ 208 (237)
T 2fz4_A 189 L--GNRFMLLIFDEVHHLPAES 208 (237)
T ss_dssp H--TTTCSEEEEECSSCCCTTT
T ss_pred h--cccCCEEEEECCccCCChH
Confidence 1 1257999999999986543
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=9e-15 Score=185.02 Aligned_cols=110 Identities=20% Similarity=0.327 Sum_probs=73.9
Q ss_pred HHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEec--hhhccCCCCC
Q psy16310 535 YLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD--VAARGLDIPG 612 (1493)
Q Consensus 535 ~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTd--v~~rGlDip~ 612 (1493)
.+..++...+++++||++|+...+.++..|.. .... ...+++..++..+++.|+ +...||+||. .+.+|||+|+
T Consensus 439 ~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g 514 (620)
T 4a15_A 439 VIEDIILKVKKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPG 514 (620)
T ss_dssp HHHHHHHHHCSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------
T ss_pred HHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCC
Confidence 34455555688999999999999999887762 2212 444566678999999999 8899999986 8999999987
Q ss_pred --CcEEEEecCCCC-------------------h----------HHHHHHHhccccCCCCCeEEEEe
Q psy16310 613 --IEHVIHYHVPRT-------------------S----------EIYIHRSGRTARANNEGLTVVLI 648 (1493)
Q Consensus 613 --v~~VI~yd~P~s-------------------~----------~~yiQR~GRagR~g~~G~~i~l~ 648 (1493)
+..||...+|.- . ....|-+||.=|....--+++|+
T Consensus 515 ~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 515 NELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred CceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEE
Confidence 779999888721 1 11259999999976543234444
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-15 Score=170.45 Aligned_cols=124 Identities=14% Similarity=0.196 Sum_probs=97.7
Q ss_pred ccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhc-CCCccccccCCCHHHHHHHHHHHhcC-CCe-EEEEe
Q psy16310 528 KHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTML-KCSPLPLHASMNQRQRLKNLDRFRDQ-NNS-ILLAT 601 (1493)
Q Consensus 528 ~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~-~~~~~~lhg~~~~~~R~~vl~~Fr~g-~~~-VLVaT 601 (1493)
..+.|...|..++.. .+.++||||++...+..+...|... |+.+..+||++++.+|..+++.|++| ..+ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 456788888777755 4689999999999999999999874 99999999999999999999999999 677 79999
Q ss_pred chhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeE--EEEecCC
Q psy16310 602 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT--VVLIESD 651 (1493)
Q Consensus 602 dv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~--i~l~~~~ 651 (1493)
+++++|||++++++||+||+|+|+..|+||+||++|.|..+.+ +.|++.+
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999987654 5566654
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-15 Score=169.98 Aligned_cols=125 Identities=14% Similarity=0.194 Sum_probs=97.1
Q ss_pred cccchhhHHHHHHHh---CCCcEEEEecchhhHHHHHHHHHhc-CCCccccccCCCHHHHHHHHHHHhcC-CCC-eEEee
Q psy16310 1061 KHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTML-KCSPLPLHASMNQRQRLKNLDRFRDQ-NNS-ILLAT 1134 (1493)
Q Consensus 1061 ~~~~k~~~l~~~l~~---~~~~~IVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~m~~~~R~~~~~~F~~g-~~~-VLVaT 1134 (1493)
....|...+..++.. .+.++||||+++..++.+...|... |+.+..+||++++.+|..++++|+++ ... +|+||
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 345677777777654 4789999999999999999999884 99999999999999999999999998 677 78999
Q ss_pred hhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeE--EEEecCCC
Q psy16310 1135 DVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT--LVLIESDE 1185 (1493)
Q Consensus 1135 dv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~--i~l~~~~e 1185 (1493)
+++++|+|++++++||+||+|.++..|+||+||++|.|+.+.+ +.|+..+.
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 9999999999999999999999999999999999999987765 44565543
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=98.27 E-value=7.8e-07 Score=112.47 Aligned_cols=145 Identities=21% Similarity=0.294 Sum_probs=86.6
Q ss_pred cHHHHhhHHHhhccCCcEEEEccCCCcch--hHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 792 TKIQSMVMPSALLARKDIVGAAETGSGKT--LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 792 t~iQ~~~i~~~l~~~~dvlv~apTGsGKT--la~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
+++|..+++.++ .++.++++|++||||| ++++++++..+.
T Consensus 151 ~~~Q~~Ai~~~l-~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~------------------------------------- 192 (608)
T 1w36_D 151 INWQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAALIQMA------------------------------------- 192 (608)
T ss_dssp CCHHHHHHHHHH-TBSEEEEECCTTSTHHHHHHHHHHHHHHTC-------------------------------------
T ss_pred CHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHHHhh-------------------------------------
Confidence 789999998666 6689999999999999 667777765431
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCc-EEEECcHHHHHHHHhCcCcc
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH-ILVATPGRLWEFIQLGHFHL 948 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~-IlV~TP~rl~~~l~~~~~~~ 948 (1493)
...+.++++++||..+|.++.+.+...+..+++..... .+... + ....+ ++-.+|+.. . +.....
T Consensus 193 ---~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~-~~~~~--~----~~Tih~ll~~~~~~~-~-~~~~~~-- 258 (608)
T 1w36_D 193 ---DGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK-KRIPE--D----ASTLHRLLGAQPGSQ-R-LRHHAG-- 258 (608)
T ss_dssp ---SSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCC-CSCSC--C----CBTTTSCC-------------CTT--
T ss_pred ---hcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHH-hccch--h----hhhhHhhhccCCCch-H-HHhccC--
Confidence 12345799999999999999888776544333221100 00000 0 00111 222233321 1 111111
Q ss_pred ccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecc
Q psy16310 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSAT 998 (1493)
Q Consensus 949 ~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SAT 998 (1493)
....+++||||||+ |++ ...+..++..+ +...|++++.-.
T Consensus 259 -~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l-----~~~~~liLvGD~ 298 (608)
T 1w36_D 259 -NPLHLDVLVVDEAS-MID---LPMMSRLIDAL-----PDHARVIFLGDR 298 (608)
T ss_dssp -SCCSCSEEEECSGG-GCB---HHHHHHHHHTC-----CTTCEEEEEECT
T ss_pred -CCCCCCEEEEechh-hCC---HHHHHHHHHhC-----CCCCEEEEEcch
Confidence 11267899999999 655 35667777766 356888888644
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=98.15 E-value=3.3e-06 Score=106.71 Aligned_cols=68 Identities=24% Similarity=0.228 Sum_probs=52.9
Q ss_pred hHHHHhhhhhhhccCCcEEEEccCCCchh--HHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 175 TKIQSMVMPSALLARKDIVGAAETGSGKT--LAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 175 t~iQ~~~i~~~l~~~~dviv~apTGSGKT--l~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
+++|..+++.++ .+++++++|++||||| ++++++++..+.
T Consensus 151 ~~~Q~~Ai~~~l-~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~------------------------------------- 192 (608)
T 1w36_D 151 INWQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAALIQMA------------------------------------- 192 (608)
T ss_dssp CCHHHHHHHHHH-TBSEEEEECCTTSTHHHHHHHHHHHHHHTC-------------------------------------
T ss_pred CHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHHHhh-------------------------------------
Confidence 789999998655 6789999999999999 567777664331
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAG 283 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~ 283 (1493)
...+.++++++||..+|.++.+.+....
T Consensus 193 ---~~~~~~vll~APTg~AA~~L~e~~~~~~ 220 (608)
T 1w36_D 193 ---DGERCRIRLAAPTGKAAARLTESLGKAL 220 (608)
T ss_dssp ---SSCCCCEEEEBSSHHHHHHHHHHHTHHH
T ss_pred ---hcCCCeEEEEeCChhHHHHHHHHHHHHH
Confidence 0124579999999999999988776543
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0011 Score=84.68 Aligned_cols=68 Identities=21% Similarity=0.117 Sum_probs=51.1
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.+.+-|.+|+..++....=.||+||.|||||.+.+-.+. ++..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~-~l~~------------------------------------ 231 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIIL-QAVK------------------------------------ 231 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHH-HHHH------------------------------------
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHH-HHHh------------------------------------
Confidence 478999999987775444578999999999987443333 3321
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHh
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDA 282 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l 282 (1493)
++.++|+++||..-|.++...+...
T Consensus 232 -----~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 232 -----QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp -----TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred -----CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 2346999999999999998887654
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0023 Score=78.17 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=49.7
Q ss_pred HHCCCCCCcHHHHhhHHHhhcc----CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHH
Q psy16310 784 YQKGFKTPTKIQSMVMPSALLA----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 859 (1493)
Q Consensus 784 ~~~g~~~pt~iQ~~~i~~~l~~----~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (1493)
..+.|..+++-|.+++..++.. ...+++.|+.|||||.+. ..++..+...
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~------------------------- 72 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST------------------------- 72 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT-------------------------
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-------------------------
Confidence 4467889999999999754432 338999999999999653 3344444221
Q ss_pred HHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHH
Q psy16310 860 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 896 (1493)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~ 896 (1493)
....+++++||...|..+...+
T Consensus 73 ---------------~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 73 ---------------GETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp ---------------TCCCEEEEESSHHHHHHHHHHH
T ss_pred ---------------CCceEEEecCcHHHHHHHHhhh
Confidence 1135899999999887665544
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0043 Score=78.67 Aligned_cols=70 Identities=19% Similarity=0.203 Sum_probs=52.4
Q ss_pred CCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcch
Q psy16310 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250 (1493)
Q Consensus 171 ~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1493)
+..+++.|.+++..++ .+.-+++.||+|||||.+..- ++.++..
T Consensus 178 ~~~ln~~Q~~av~~~l-~~~~~li~GppGTGKT~~~~~-~i~~l~~---------------------------------- 221 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSAT-IVYHLAR---------------------------------- 221 (624)
T ss_dssp SCCCCHHHHHHHHHHH-TCSEEEEECCTTSCHHHHHHH-HHHHHHT----------------------------------
T ss_pred cCCCCHHHHHHHHHHh-cCCCeEEECCCCCCHHHHHHH-HHHHHHH----------------------------------
Confidence 4568999999998555 456789999999999987433 3333321
Q ss_pred hhhhcccCceEEEEEcccHHHHHHHHHHHHHh
Q psy16310 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDA 282 (1493)
Q Consensus 251 ~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l 282 (1493)
..+.++|+++||...|.++...+...
T Consensus 222 ------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 222 ------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp ------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred ------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 12346999999999999998887654
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0016 Score=83.13 Aligned_cols=68 Identities=21% Similarity=0.122 Sum_probs=51.2
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.+.+-|.+|+..++....=.||+||.|||||.+.+-.+.+ ++.
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~-l~~------------------------------------ 231 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQ-AVK------------------------------------ 231 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHH-HHH------------------------------------
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHH-HHh------------------------------------
Confidence 4689999999877755445789999999999874433333 321
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHh
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDA 899 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~ 899 (1493)
.+.++|+++||..=|.++.+.+...
T Consensus 232 -----~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 232 -----QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp -----TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred -----CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 2346999999999999998888654
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0044 Score=78.58 Aligned_cols=70 Identities=19% Similarity=0.203 Sum_probs=52.5
Q ss_pred CCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcch
Q psy16310 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 867 (1493)
Q Consensus 788 ~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1493)
+..+++.|..|+..++ .+.-++++||+|||||.+..- ++..+..
T Consensus 178 ~~~ln~~Q~~av~~~l-~~~~~li~GppGTGKT~~~~~-~i~~l~~---------------------------------- 221 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSAT-IVYHLAR---------------------------------- 221 (624)
T ss_dssp SCCCCHHHHHHHHHHH-TCSEEEEECCTTSCHHHHHHH-HHHHHHT----------------------------------
T ss_pred cCCCCHHHHHHHHHHh-cCCCeEEECCCCCCHHHHHHH-HHHHHHH----------------------------------
Confidence 4567999999998665 455789999999999987433 3333321
Q ss_pred hhhhccCCCeEEEEEcccHHHHHHHHHHHHHh
Q psy16310 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDA 899 (1493)
Q Consensus 868 ~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~ 899 (1493)
..+.++|+++||..-|.++.+.+...
T Consensus 222 ------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 222 ------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp ------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred ------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 13346999999999999999888654
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0055 Score=76.43 Aligned_cols=64 Identities=17% Similarity=0.107 Sum_probs=46.9
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.+++.|.+++..++ .+..+++.|+.|||||.+... ++..+.
T Consensus 189 ~L~~~Q~~Av~~~~-~~~~~~I~G~pGTGKTt~i~~-l~~~l~------------------------------------- 229 (574)
T 3e1s_A 189 GLSEEQASVLDQLA-GHRLVVLTGGPGTGKSTTTKA-VADLAE------------------------------------- 229 (574)
T ss_dssp TCCHHHHHHHHHHT-TCSEEEEECCTTSCHHHHHHH-HHHHHH-------------------------------------
T ss_pred CCCHHHHHHHHHHH-hCCEEEEEcCCCCCHHHHHHH-HHHHHH-------------------------------------
Confidence 58899999997544 667999999999999986322 333221
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHH
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHI 279 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~ 279 (1493)
..+.++++++||...+..+.+.+
T Consensus 230 ----~~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 230 ----SLGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp ----HTTCCEEEEESSHHHHHHHHHHH
T ss_pred ----hcCCeEEEecCcHHHHHHhHhhh
Confidence 12356999999999998776543
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.005 Score=75.13 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=49.7
Q ss_pred HHCCCCCChHHHHhhhhhhhcc----CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHH
Q psy16310 167 YQKGFKTPTKIQSMVMPSALLA----RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 242 (1493)
Q Consensus 167 ~~~g~~~pt~iQ~~~i~~~l~~----~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1493)
.-+.|..+++-|.+++..++.. ...+++.|+.|||||.+. ..++..+...
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~------------------------- 72 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST------------------------- 72 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT-------------------------
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-------------------------
Confidence 3467888999999999754322 348999999999999764 3344444321
Q ss_pred HHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHH
Q psy16310 243 EEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHI 279 (1493)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~ 279 (1493)
....+++++||...|..+...+
T Consensus 73 ---------------~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 73 ---------------GETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp ---------------TCCCEEEEESSHHHHHHHHHHH
T ss_pred ---------------CCceEEEecCcHHHHHHHHhhh
Confidence 1135899999999887766544
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0032 Score=78.57 Aligned_cols=64 Identities=17% Similarity=0.107 Sum_probs=46.4
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.+++.|..++..++ .+..+++.|+.|||||.+. ..++..+.
T Consensus 189 ~L~~~Q~~Av~~~~-~~~~~~I~G~pGTGKTt~i-~~l~~~l~------------------------------------- 229 (574)
T 3e1s_A 189 GLSEEQASVLDQLA-GHRLVVLTGGPGTGKSTTT-KAVADLAE------------------------------------- 229 (574)
T ss_dssp TCCHHHHHHHHHHT-TCSEEEEECCTTSCHHHHH-HHHHHHHH-------------------------------------
T ss_pred CCCHHHHHHHHHHH-hCCEEEEEcCCCCCHHHHH-HHHHHHHH-------------------------------------
Confidence 57899999997554 5678999999999999763 22333321
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHH
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHI 896 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~ 896 (1493)
..+.++++++||...+..+.+.+
T Consensus 230 ----~~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 230 ----SLGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp ----HTTCCEEEEESSHHHHHHHHHHH
T ss_pred ----hcCCeEEEecCcHHHHHHhHhhh
Confidence 12346899999999988766543
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0075 Score=78.15 Aligned_cols=70 Identities=21% Similarity=0.219 Sum_probs=52.2
Q ss_pred CCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcch
Q psy16310 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250 (1493)
Q Consensus 171 ~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1493)
+..+++.|.+++..++ .+.-++|.||.|||||.+..- ++.++...
T Consensus 358 ~~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~~i~~-~i~~l~~~--------------------------------- 402 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVL-QRPLSLIQGPPGTGKTVTSAT-IVYHLSKI--------------------------------- 402 (802)
T ss_dssp SCCCCHHHHHHHHHHT-TCSEEEEECSTTSSHHHHHHH-HHHHHHHH---------------------------------
T ss_pred cccCCHHHHHHHHHHh-cCCCEEEECCCCCCHHHHHHH-HHHHHHhC---------------------------------
Confidence 4567899999998555 455689999999999987433 33333210
Q ss_pred hhhhcccCceEEEEEcccHHHHHHHHHHHHHh
Q psy16310 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDA 282 (1493)
Q Consensus 251 ~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l 282 (1493)
.+.++|+++||...|.++...+...
T Consensus 403 -------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 403 -------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp -------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred -------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 1246999999999999999888765
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0061 Score=79.03 Aligned_cols=72 Identities=22% Similarity=0.245 Sum_probs=53.3
Q ss_pred CCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 787 g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
.+..+++.|..|+..++ .+.-++++||.|||||.+..- ++..+...
T Consensus 357 ~~~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~~i~~-~i~~l~~~-------------------------------- 402 (802)
T 2xzl_A 357 NFAQLNSSQSNAVSHVL-QRPLSLIQGPPGTGKTVTSAT-IVYHLSKI-------------------------------- 402 (802)
T ss_dssp TSCCCCHHHHHHHHHHT-TCSEEEEECSTTSSHHHHHHH-HHHHHHHH--------------------------------
T ss_pred ccccCCHHHHHHHHHHh-cCCCEEEECCCCCCHHHHHHH-HHHHHHhC--------------------------------
Confidence 34578999999998655 455689999999999987433 33333210
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhh
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 900 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~ 900 (1493)
.+.++|+++||..-|.++.+.+...+
T Consensus 403 --------~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 403 --------HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp --------HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred --------CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 22469999999999999999887753
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0099 Score=76.94 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=52.3
Q ss_pred CCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcch
Q psy16310 788 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 867 (1493)
Q Consensus 788 ~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1493)
...+++.|..|+..++ .+.-++++||.|||||.+.. .++..+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~ti~-~~i~~l~~---------------------------------- 397 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSA-TIVYHLAR---------------------------------- 397 (800)
T ss_dssp SCCCCHHHHHHHHHHH-TSSEEEEECCTTSCHHHHHH-HHHHHHHT----------------------------------
T ss_pred ccCCCHHHHHHHHHhc-cCCeEEEEcCCCCCHHHHHH-HHHHHHHH----------------------------------
Confidence 4567999999998665 44578999999999998743 33433321
Q ss_pred hhhhccCCCeEEEEEcccHHHHHHHHHHHHHh
Q psy16310 868 EFVKKTRNKLYALILAPTRELAIQVQNHILDA 899 (1493)
Q Consensus 868 ~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~ 899 (1493)
..+.++++++||..-|.++.+.+...
T Consensus 398 ------~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 398 ------QGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp ------TCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ------cCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 12346999999999999998887654
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.011 Score=76.58 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=51.9
Q ss_pred CCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcch
Q psy16310 171 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 250 (1493)
Q Consensus 171 ~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1493)
...+++.|.+++..++ .+.-+++.||.|||||.+.. .++..+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~ti~-~~i~~l~~---------------------------------- 397 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSA-TIVYHLAR---------------------------------- 397 (800)
T ss_dssp SCCCCHHHHHHHHHHH-TSSEEEEECCTTSCHHHHHH-HHHHHHHT----------------------------------
T ss_pred ccCCCHHHHHHHHHhc-cCCeEEEEcCCCCCHHHHHH-HHHHHHHH----------------------------------
Confidence 3457899999998555 45578999999999998743 33333321
Q ss_pred hhhhcccCceEEEEEcccHHHHHHHHHHHHHh
Q psy16310 251 EFVKKTRNKLYALILAPTRELAIQVQNHILDA 282 (1493)
Q Consensus 251 ~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l 282 (1493)
..+.++++++||...|.++.+.+...
T Consensus 398 ------~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 398 ------QGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp ------TCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ------cCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 12346999999999999998887654
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.036 Score=62.50 Aligned_cols=123 Identities=15% Similarity=0.053 Sum_probs=87.9
Q ss_pred ccCchhhHHHHHH---hhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechh
Q psy16310 528 KHDEKDSYLYYFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604 (1493)
Q Consensus 528 ~~~~k~~~l~~~l---~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~ 604 (1493)
..+.|+.+|..+| ...+.+++||++......-+..+|...++....+.|.....++. -..+...|.+.|...
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag 180 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEG 180 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCC
Confidence 3567777776665 44577999999999999999999999999999999985543322 124556666667766
Q ss_pred hccCC-----CCCCcEEEEecCCCChHH-HHHHHhccccCC----CCCeEEEEecCCcchh
Q psy16310 605 ARGLD-----IPGIEHVIHYHVPRTSEI-YIHRSGRTARAN----NEGLTVVLIESDEIPL 655 (1493)
Q Consensus 605 ~rGlD-----ip~v~~VI~yd~P~s~~~-yiQR~GRagR~g----~~G~~i~l~~~~e~~~ 655 (1493)
.-|++ ....+.||.||.-.|+.. .+|.+-|+.|.| +.-.+|.|++..-+.+
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 66676 678999999999999887 488887777763 3557788887765544
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.1 Score=60.98 Aligned_cols=71 Identities=15% Similarity=0.080 Sum_probs=53.8
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.++|+|...+. .+...+-+++..+-+.|||.+....++..++.
T Consensus 163 ~L~p~Qk~il~-~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~------------------------------------ 205 (385)
T 2o0j_A 163 QLRDYQRDMLK-IMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF------------------------------------ 205 (385)
T ss_dssp CCCHHHHHHHH-HHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS------------------------------------
T ss_pred CCCHHHHHHHH-hhccCcEEEEEEcCcCChhHHHHHHHHHHHHh------------------------------------
Confidence 68999999986 44344668999999999998876655543321
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhC
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGK 901 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~ 901 (1493)
.++..+++++||+.-|..+.+.++.+..
T Consensus 206 ----~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 206 ----NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp ----SSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred ----CCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 2345799999999999988888777654
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=94.51 E-value=0.12 Score=58.10 Aligned_cols=123 Identities=14% Similarity=0.046 Sum_probs=84.2
Q ss_pred ccchhhHHHHHH---HhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhh
Q psy16310 1062 HDEKDSYLYYFI---LQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAA 1138 (1493)
Q Consensus 1062 ~~~k~~~l~~~l---~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~ 1138 (1493)
.+.|...|-.++ ...+.+++||++.....+-+..+|...++....+.|.....++ + -.++...|.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-A----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-h----cccCCceEEEEECCCC
Confidence 344555544444 4557799999999999999999999999988888888554322 1 1244555656677666
Q ss_pred cccc-----CCCccEEEEecCCCChhH-HHHHHhccCCCC----CCCeEEEEecCCCHHHH
Q psy16310 1139 RGLD-----IPGIEHVIHYHVPRTSEI-YIHRSGRTARAN----NEGLTLVLIESDEIPLY 1189 (1493)
Q Consensus 1139 ~GiD-----ip~v~~VI~~d~p~s~~~-yiqr~GR~gR~g----~~G~~i~l~~~~e~~~~ 1189 (1493)
-|++ ....+.||.||.-.++.. .+|.+-|+.|.| +.-..+-|++..-++..
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~ 242 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHC 242 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHH
Confidence 6676 678999999999988877 588887777763 35567778877766543
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.22 Score=58.27 Aligned_cols=70 Identities=16% Similarity=0.075 Sum_probs=52.7
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.|+|+|...+. .+...+-+++..+-+.|||.+.+..++..+..
T Consensus 163 ~L~p~Qk~il~-~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~------------------------------------ 205 (385)
T 2o0j_A 163 QLRDYQRDMLK-IMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF------------------------------------ 205 (385)
T ss_dssp CCCHHHHHHHH-HHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS------------------------------------
T ss_pred CCCHHHHHHHH-hhccCcEEEEEEcCcCChhHHHHHHHHHHHHh------------------------------------
Confidence 68999999986 44445668999999999999876666543321
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAG 283 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~ 283 (1493)
..+..+++++||+.-|..+.+.+..+.
T Consensus 206 ----~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 206 ----NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp ----SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ----CCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 134569999999999988877766544
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.14 Score=53.31 Aligned_cols=20 Identities=25% Similarity=0.169 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCCcchhHhh
Q psy16310 805 ARKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~ 824 (1493)
.|+.+++.||+|+|||..+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 47889999999999997643
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.19 Score=63.13 Aligned_cols=73 Identities=15% Similarity=0.072 Sum_probs=55.2
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.|+|+|...+. .+...+.+++..+-|+|||.+.+..++..+..
T Consensus 163 ~l~p~Q~~i~~-~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~------------------------------------ 205 (592)
T 3cpe_A 163 QLRDYQRDMLK-IMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF------------------------------------ 205 (592)
T ss_dssp CCCHHHHHHHH-HHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT------------------------------------
T ss_pred cCCHHHHHHHH-hhccccEEEEEEcCccChHHHHHHHHHHHHHh------------------------------------
Confidence 58999999886 44456779999999999999876555544422
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYT 286 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~ 286 (1493)
.++..+++++||++.|..+...+..+....
T Consensus 206 ----~~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 206 ----NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp ----SSSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred ----CCCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 123469999999999999888887765443
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=92.91 E-value=0.13 Score=65.59 Aligned_cols=71 Identities=18% Similarity=0.126 Sum_probs=52.8
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..+++-|.+++. . .+..++|.|+.|||||.+.+--+...+...
T Consensus 8 ~~Ln~~Q~~av~-~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~---------------------------------- 50 (647)
T 3lfu_A 8 DSLNDKQREAVA-A--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVE---------------------------------- 50 (647)
T ss_dssp TTCCHHHHHHHT-C--CSSCEEEEECTTSCHHHHHHHHHHHHHHTS----------------------------------
T ss_pred hcCCHHHHHHHh-C--CCCCEEEEECCCCCHHHHHHHHHHHHHHhC----------------------------------
Confidence 467999999995 2 345899999999999987544444333211
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHHhh
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAG 900 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~ 900 (1493)
..++.++|++++|+..+.++.+.+..+.
T Consensus 51 ----~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 51 ----NCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp ----CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred ----CCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 1223469999999999999999998864
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.32 Score=50.51 Aligned_cols=20 Identities=25% Similarity=0.169 Sum_probs=17.2
Q ss_pred cCCcEEEEccCCCchhHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~ 207 (1493)
.++.++++||+|+|||..+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 47889999999999998743
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=92.51 E-value=0.2 Score=63.93 Aligned_cols=112 Identities=18% Similarity=0.135 Sum_probs=73.1
Q ss_pred CCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchh
Q psy16310 172 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 251 (1493)
Q Consensus 172 ~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1493)
..+++-|.+++. . .+..++|.|+.|||||.+.+--+.+.+...
T Consensus 8 ~~Ln~~Q~~av~-~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~---------------------------------- 50 (647)
T 3lfu_A 8 DSLNDKQREAVA-A--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVE---------------------------------- 50 (647)
T ss_dssp TTCCHHHHHHHT-C--CSSCEEEEECTTSCHHHHHHHHHHHHHHTS----------------------------------
T ss_pred hcCCHHHHHHHh-C--CCCCEEEEECCCCCHHHHHHHHHHHHHHhC----------------------------------
Confidence 468999999996 3 346899999999999998544443333210
Q ss_pred hhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccc
Q psy16310 252 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331 (1493)
Q Consensus 252 ~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~ 331 (1493)
+....++|++++|+..+.++.+.+..+.... ...+-|+|...+...+-......
T Consensus 51 ----~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~----------------------~~~~~v~Tfhs~~~~il~~~~~~ 104 (647)
T 3lfu_A 51 ----NCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS----------------------QGGMWVGTFHGLAHRLLRAHHMD 104 (647)
T ss_dssp ----CCCGGGEEEEESSHHHHHHHHHHHHHHHCSC----------------------CTTCEEEEHHHHHHHHHHHTTGG
T ss_pred ----CCChhhEEEEeccHHHHHHHHHHHHHHhccc----------------------cCCcEEEcHHHHHHHHHHHHHHH
Confidence 1123469999999999999999998764210 12678899888865443322221
Q ss_pred cccccccEEEEecCch
Q psy16310 332 TELYKINYLVIDETDR 347 (1493)
Q Consensus 332 ~~l~~i~~lViDEAh~ 347 (1493)
..+ .-.+-|+|+.+.
T Consensus 105 ~~~-~~~~~i~~~~~~ 119 (647)
T 3lfu_A 105 ANL-PQDFQILDSEDQ 119 (647)
T ss_dssp GTC-CTTCEEECHHHH
T ss_pred hCC-CCCCEEeCHHHH
Confidence 111 124567787664
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.72 E-value=0.88 Score=51.66 Aligned_cols=19 Identities=16% Similarity=-0.094 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCchhHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~ 206 (1493)
.+.++++.||+|+|||.+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp CCCEEEEECCCSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3568999999999999974
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=91.62 E-value=0.15 Score=60.25 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=17.0
Q ss_pred EEEEcccHHHHHHHHHHHHH
Q psy16310 262 ALILAPTRELAIQVQNHILD 281 (1493)
Q Consensus 262 aLiL~PTreLa~Qi~~~~~~ 281 (1493)
.+|++||++++..+.+.+..
T Consensus 187 ~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 187 DLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp CEEEESCHHHHHHHHHHHTT
T ss_pred eEEEeCCHHHHHHHHHHhhh
Confidence 69999999999988877743
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=91.49 E-value=0.72 Score=51.43 Aligned_cols=17 Identities=24% Similarity=0.155 Sum_probs=15.1
Q ss_pred CcEEEEccCCCcchhHh
Q psy16310 807 KDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~ 823 (1493)
..+++.||+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999764
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=91.10 E-value=0.4 Score=56.68 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=16.9
Q ss_pred EEEEcccHHHHHHHHHHHHH
Q psy16310 879 ALILAPTRELAIQVQNHILD 898 (1493)
Q Consensus 879 ~lil~PTreLa~Q~~~~~~~ 898 (1493)
.+|++||++++..+.+.+..
T Consensus 187 ~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 187 DLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp CEEEESCHHHHHHHHHHHTT
T ss_pred eEEEeCCHHHHHHHHHHhhh
Confidence 69999999999888877643
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=91.00 E-value=0.27 Score=51.57 Aligned_cols=21 Identities=19% Similarity=-0.167 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCchhHHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~l 208 (1493)
.|+=.++++|.|||||.+.+-
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHH
Confidence 355678899999999987443
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=90.66 E-value=0.18 Score=50.64 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCcchhHh
Q psy16310 805 ARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~ 823 (1493)
.+..+++.||+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999753
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.53 E-value=1.4 Score=49.89 Aligned_cols=43 Identities=5% Similarity=0.125 Sum_probs=25.6
Q ss_pred ceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccc
Q psy16310 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 1000 (1493)
Q Consensus 953 ~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~ 1000 (1493)
..-+|||||+|++.+ ...+..++.... ......-+++.++|+.
T Consensus 132 ~~~ii~lDE~d~l~~---q~~L~~l~~~~~--~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 132 RKTLILIQNPENLLS---EKILQYFEKWIS--SKNSKLSIICVGGHNV 174 (318)
T ss_dssp CEEEEEEECCSSSCC---THHHHHHHHHHH--CSSCCEEEEEECCSSC
T ss_pred CceEEEEecHHHhhc---chHHHHHHhccc--ccCCcEEEEEEecCcc
Confidence 346899999999872 234444554321 1123455667788774
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=90.40 E-value=0.33 Score=62.13 Aligned_cols=90 Identities=16% Similarity=-0.014 Sum_probs=62.9
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.+++-|.+++. . .+..++|.|+.|||||.+.+--+.+.+...
T Consensus 2 ~L~~~Q~~av~-~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~----------------------------------- 43 (673)
T 1uaa_A 2 RLNPGQQQAVE-F--VTGPCLVLAGAGSGKTRVITNKIAHLIRGC----------------------------------- 43 (673)
T ss_dssp CCCHHHHHHHH-C--CSSEEEECCCTTSCHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred CCCHHHHHHHh-C--CCCCEEEEeCCCCChHHHHHHHHHHHHHhc-----------------------------------
Confidence 47899999996 3 256899999999999998544444333210
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHH
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFI 324 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l 324 (1493)
+....++|+|+.|+..|.++.+.+.......+ ...+-|+|-..|..-+
T Consensus 44 ---~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~---------------------~~~~~v~Tfhs~~~~i 91 (673)
T 1uaa_A 44 ---GYQARHIAAVTFTNKAAREMKERVGQTLGRKE---------------------ARGLMISTFHTLGLDI 91 (673)
T ss_dssp ---CCCGGGEEEEESSHHHHHHHHHHHHHHSCTTT---------------------TTTSEEEEHHHHHHHH
T ss_pred ---CCCHHHeEEEeccHHHHHHHHHHHHHHcCccc---------------------ccCCEEEeHHHHHHHH
Confidence 11234599999999999999999887643210 1257788988776543
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=90.40 E-value=0.29 Score=62.68 Aligned_cols=71 Identities=15% Similarity=-0.019 Sum_probs=52.1
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.++|-|.+++.. .+..++|.|+.|||||.+..--+...+...
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~----------------------------------- 43 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGC----------------------------------- 43 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhc-----------------------------------
Confidence 478999999963 346899999999999987544444333221
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhC
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGK 901 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~ 901 (1493)
...+.++|+|+.|+..|.++.+.+.....
T Consensus 44 ---~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 44 ---GYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp ---CCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred ---CCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 11234699999999999999999987643
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=90.26 E-value=0.37 Score=50.44 Aligned_cols=22 Identities=18% Similarity=-0.173 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCcchhHhhHH
Q psy16310 805 ARKDIVGAAETGSGKTLAFGIP 826 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~lp 826 (1493)
.|+=.++.||.|||||.+.+--
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~ 28 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRR 28 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHH
Confidence 3455688999999999875433
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=89.74 E-value=0.23 Score=53.35 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=21.6
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRM 348 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~l 348 (1493)
+-+.+...++..+..... -.++++||||||+.+
T Consensus 69 ~~~~~~~~i~~~i~~~~~----~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 69 VEVESAPEILNYIMSNSF----NDETKVIGIDEVQFF 101 (223)
T ss_dssp EEESSTHHHHHHHHSTTS----CTTCCEEEECSGGGS
T ss_pred cccCCHHHHHHHHHHHhh----CCCCCEEEEecCccC
Confidence 445666777777654321 124789999999964
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=89.71 E-value=0.95 Score=51.92 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
+..+++.||+|+|||..+
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999764
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.46 E-value=1.1 Score=52.78 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
.+.+++.||+|+|||.++
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999764
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=89.28 E-value=0.34 Score=48.60 Aligned_cols=20 Identities=25% Similarity=0.204 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCCchhHHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~~ 207 (1493)
.+..+++.+|+|+|||....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56789999999999998643
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=89.11 E-value=0.1 Score=54.55 Aligned_cols=19 Identities=32% Similarity=0.060 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~ 207 (1493)
++-.++++|.|+|||...+
T Consensus 3 g~i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELL 21 (184)
T ss_dssp CCEEEEEESTTSSHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHH
Confidence 4557899999999999854
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=88.45 E-value=0.7 Score=59.48 Aligned_cols=112 Identities=17% Similarity=0.129 Sum_probs=71.3
Q ss_pred CCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchh
Q psy16310 172 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 251 (1493)
Q Consensus 172 ~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1493)
..+++-|.+++. . .+..++|.|..|||||.+..--+.+.+...
T Consensus 10 ~~Ln~~Q~~av~-~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~---------------------------------- 52 (724)
T 1pjr_A 10 AHLNKEQQEAVR-T--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK---------------------------------- 52 (724)
T ss_dssp TTSCHHHHHHHH-C--CSSCEEEEECTTSCHHHHHHHHHHHHHHTT----------------------------------
T ss_pred hhCCHHHHHHHh-C--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhc----------------------------------
Confidence 458999999996 3 245899999999999998544444333210
Q ss_pred hhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccc
Q psy16310 252 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331 (1493)
Q Consensus 252 ~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~ 331 (1493)
+....++|+|+.|+..|.++.+.+..+... . ...+-|+|-..|..-+-..+...
T Consensus 53 ----~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~-----------~-----------~~~~~v~Tfhs~~~~ilr~~~~~ 106 (724)
T 1pjr_A 53 ----HVAPWNILAITFTNKAAREMRERVQSLLGG-----------A-----------AEDVWISTFHSMCVRILRRDIDR 106 (724)
T ss_dssp ----CCCGGGEEEEESSHHHHHHHHHHHHHHHGG-----------G-----------GTTSEEEEHHHHHHHHHHHHGGG
T ss_pred ----CCCHHHeEEEeccHHHHHHHHHHHHHHhcc-----------c-----------ccCcEEeeHHHHHHHHHHHHHHH
Confidence 112245999999999999999888775321 0 01477889887754432222111
Q ss_pred cccccccEEEEecCch
Q psy16310 332 TELYKINYLVIDETDR 347 (1493)
Q Consensus 332 ~~l~~i~~lViDEAh~ 347 (1493)
..+ .-.+-|+|+.+.
T Consensus 107 ~g~-~~~f~i~d~~d~ 121 (724)
T 1pjr_A 107 IGI-NRNFSILDPTDQ 121 (724)
T ss_dssp GTC-CTTCEECCHHHH
T ss_pred hCC-CCCCEECCHHHH
Confidence 111 123567887764
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=88.20 E-value=0.66 Score=59.72 Aligned_cols=71 Identities=18% Similarity=0.116 Sum_probs=51.3
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
..++|-|.+++.. .+..++|.|+.|||||.+..--+...+...
T Consensus 10 ~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~---------------------------------- 52 (724)
T 1pjr_A 10 AHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK---------------------------------- 52 (724)
T ss_dssp TTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTT----------------------------------
T ss_pred hhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHHhc----------------------------------
Confidence 4679999999963 345899999999999987544444333211
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHHhh
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAG 900 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~ 900 (1493)
...+.++|+|+.|+..|.++.+.+..+.
T Consensus 53 ----~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 53 ----HVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp ----CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred ----CCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 1123468999999999999888887753
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=87.97 E-value=2 Score=49.10 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCchhHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~ 207 (1493)
+..++++||+|+|||..+-
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4689999999999998743
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=87.29 E-value=0.45 Score=59.26 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=27.9
Q ss_pred CChHHHHhhhhhhhcc-CCcEEEEccCCCchhHHHHHHH
Q psy16310 173 TPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPI 210 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~-~~dviv~apTGSGKTl~~~lpi 210 (1493)
.+|.-|.+++...+.- ..-.++.|+-|.|||.+..+.+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~ 213 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI 213 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH
Confidence 5899999999744431 2346889999999997765544
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=87.22 E-value=1.3 Score=53.07 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
+..+++.||+|+|||..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999764
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=87.17 E-value=0.81 Score=62.60 Aligned_cols=129 Identities=20% Similarity=0.125 Sum_probs=74.3
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.+|+-|.++|. . .+.+++|.|.-|||||.+.+--++..+.....
T Consensus 10 ~~t~eQ~~~i~-~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~--------------------------------- 53 (1232)
T 3u4q_A 10 TWTDDQWNAIV-S--TGQDILVAAAAGSGKTAVLVERMIRKITAEEN--------------------------------- 53 (1232)
T ss_dssp CCCHHHHHHHH-C--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSS---------------------------------
T ss_pred CCCHHHHHHHh-C--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCC---------------------------------
Confidence 58999999996 3 36799999999999999955555544432100
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcccc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~ 332 (1493)
....-++|+|++|+..|..+.+.+....... +.. +... ......+..-..+-|+|-..+..-+-..+....
T Consensus 54 ---~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~-~~~----~~~~-~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~ 124 (1232)
T 3u4q_A 54 ---PIDVDRLLVVTFTNASAAEMKHRIAEALEKE-LVQ----RPGS-LHIRRQLSLLNRASISTLHSFCLQVLKKYYYLI 124 (1232)
T ss_dssp ---CCCGGGEEEECSSHHHHHHHHHHHHHHHHHH-HHH----STTC-HHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGT
T ss_pred ---CCCccceEEEeccHHHHHHHHHHHHHHHHHH-hhc----Ccch-HHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhc
Confidence 0122359999999999999988886632100 000 0001 111111112236788998877654433322111
Q ss_pred ccccccEEEEecCch
Q psy16310 333 ELYKINYLVIDETDR 347 (1493)
Q Consensus 333 ~l~~i~~lViDEAh~ 347 (1493)
.+. -.+-|+||...
T Consensus 125 ~~~-~~f~~~d~~~~ 138 (1232)
T 3u4q_A 125 DLD-PGFRIADQTEG 138 (1232)
T ss_dssp TCC-TTCEECCHHHH
T ss_pred CCC-CCCeeCCHHHH
Confidence 121 12337788664
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=87.09 E-value=0.67 Score=63.42 Aligned_cols=71 Identities=27% Similarity=0.220 Sum_probs=53.0
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.+|+-|.++|.. .+.+++|.|.-|||||.+.+--++..+.....
T Consensus 10 ~~t~eQ~~~i~~---~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~--------------------------------- 53 (1232)
T 3u4q_A 10 TWTDDQWNAIVS---TGQDILVAAAAGSGKTAVLVERMIRKITAEEN--------------------------------- 53 (1232)
T ss_dssp CCCHHHHHHHHC---CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSS---------------------------------
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCC---------------------------------
Confidence 579999999962 36799999999999998855555554432110
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHh
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDA 899 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~ 899 (1493)
.....++|+|++|+..|..+.+.+...
T Consensus 54 ---~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 54 ---PIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp ---CCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred ---CCCccceEEEeccHHHHHHHHHHHHHH
Confidence 012346999999999999999888774
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=86.73 E-value=1.6 Score=45.94 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=15.2
Q ss_pred CcEEEEccCCCcchhHh
Q psy16310 807 KDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~ 823 (1493)
..+++.||+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999764
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=86.56 E-value=1.5 Score=49.82 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=17.0
Q ss_pred CCcEEEEccCCCchhHHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~l 208 (1493)
+.++++.||||+|||..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57999999999999987543
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=86.31 E-value=1.5 Score=51.55 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
...+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 457999999999999764
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=85.68 E-value=2.6 Score=49.36 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCcchhHh
Q psy16310 805 ARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~ 823 (1493)
.+..+++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3568999999999999764
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=85.63 E-value=1.5 Score=49.77 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCcchhHhh
Q psy16310 806 RKDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~ 824 (1493)
+.++++.||||+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5799999999999997643
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=85.37 E-value=3.7 Score=45.48 Aligned_cols=19 Identities=21% Similarity=0.109 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchhHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~ 207 (1493)
...++++||+|+|||..+-
T Consensus 64 ~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3579999999999998753
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=84.53 E-value=6.2 Score=46.01 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCchhHHH
Q psy16310 188 ARKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 188 ~~~dviv~apTGSGKTl~~ 206 (1493)
.+..++++||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3568999999999999864
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=82.75 E-value=3.6 Score=47.21 Aligned_cols=33 Identities=12% Similarity=-0.046 Sum_probs=23.0
Q ss_pred cHHHHhhHHHh---hccC---CcEEEEccCCCcchhHhh
Q psy16310 792 TKIQSMVMPSA---LLAR---KDIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 792 t~iQ~~~i~~~---l~~~---~dvlv~apTGsGKTla~~ 824 (1493)
.|+|..++..+ +..| +.+++.||.|+|||..+.
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 57777776432 2333 358999999999997654
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=82.72 E-value=1.9 Score=44.79 Aligned_cols=20 Identities=20% Similarity=-0.081 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCcchhHhhH
Q psy16310 806 RKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~l 825 (1493)
++=.++.||.|||||.-.+-
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~ 39 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMR 39 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHH
Confidence 45568899999999965333
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=82.72 E-value=5 Score=48.02 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCchhHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~ 207 (1493)
+..++++||+|+|||..+-
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4689999999999998643
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=82.33 E-value=3.3 Score=49.03 Aligned_cols=46 Identities=20% Similarity=0.370 Sum_probs=29.0
Q ss_pred ceeEEEecccchhc---cCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 953 KINYLVIDETDRMI---ESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 953 ~l~~lVlDEah~ll---~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..+++|+|++-++. +..+...+..+...+ .+..-+++++|+.....
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~-----~pd~vlLVlDa~~gq~a 227 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL-----KPDDVILVIDASIGQKA 227 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH-----CCSEEEEEEEGGGGGGG
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhh-----CCcceEEEEeCccchHH
Confidence 56899999998643 223445566665555 24455677888875443
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=82.00 E-value=5 Score=45.72 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=30.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhh-HHHhhccCCcEEEEccCCCcchhHh
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMV-MPSALLARKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~-i~~~l~~~~dvlv~apTGsGKTla~ 823 (1493)
..|.++.-...+.+.|...-. .|....- +.......+.+++.||+|+|||..+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVI---LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHH---HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 458888777777777764321 1111000 0001112357999999999999764
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=81.82 E-value=2.9 Score=52.27 Aligned_cols=74 Identities=16% Similarity=0.105 Sum_probs=56.3
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.|+|+|...+. .+...+-+++.++-|+|||.+....++..++.
T Consensus 163 ~l~p~Q~~i~~-~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~------------------------------------ 205 (592)
T 3cpe_A 163 QLRDYQRDMLK-IMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF------------------------------------ 205 (592)
T ss_dssp CCCHHHHHHHH-HHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT------------------------------------
T ss_pred cCCHHHHHHHH-hhccccEEEEEEcCccChHHHHHHHHHHHHHh------------------------------------
Confidence 68999999986 44455778999999999998866554443321
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCC
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP 904 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~ 904 (1493)
.++..+++++||+..|..+...++.+....+
T Consensus 206 ----~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 206 ----NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp ----SSSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred ----CCCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 2345799999999999999988888765543
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=81.63 E-value=1.2 Score=55.34 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=28.8
Q ss_pred CCcHHHHhhHHHhhcc-CCcEEEEccCCCcchhHhhHHHH
Q psy16310 790 TPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPIL 828 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~-~~dvlv~apTGsGKTla~~lpil 828 (1493)
.+|.-|.+++..++.. ..-.++.|+-|.|||.+..+.+-
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a 214 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS 214 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH
Confidence 5799999999755431 22468899999999977666543
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=81.50 E-value=7.6 Score=40.89 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=14.5
Q ss_pred CcEEEEccCCCcchhHh
Q psy16310 807 KDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~ 823 (1493)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999753
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=80.60 E-value=1.6 Score=46.05 Aligned_cols=22 Identities=14% Similarity=-0.209 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCcchhHhhHH
Q psy16310 805 ARKDIVGAAETGSGKTLAFGIP 826 (1493)
Q Consensus 805 ~~~dvlv~apTGsGKTla~~lp 826 (1493)
.|.=.++.+|-|||||...+.-
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~ 48 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRR 48 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHH
Confidence 3455688999999999764433
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=80.16 E-value=2.4 Score=48.59 Aligned_cols=24 Identities=29% Similarity=0.025 Sum_probs=18.2
Q ss_pred ccCCcEEEEccCCCcchhHhhHHH
Q psy16310 804 LARKDIVGAAETGSGKTLAFGIPI 827 (1493)
Q Consensus 804 ~~~~dvlv~apTGsGKTla~~lpi 827 (1493)
..|.-+++.||+|+|||...+-.+
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la 128 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLS 128 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHH
Confidence 346788999999999997654433
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=80.09 E-value=7 Score=45.53 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCcchhHh
Q psy16310 806 RKDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~ 823 (1493)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1493 | ||||
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 2e-30 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 1e-26 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 2e-04 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 3e-27 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 2e-23 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 0.001 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 3e-26 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 3e-14 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 4e-10 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 3e-25 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 3e-25 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 2e-23 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 4e-20 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 2e-23 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 7e-20 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 2e-23 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 1e-19 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 3e-23 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 2e-19 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 7e-22 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 2e-19 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 1e-20 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 6e-17 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 4e-20 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 8e-19 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 1e-19 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 8e-19 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 6e-19 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 3e-15 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 1e-18 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 5e-18 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 3e-17 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 1e-13 | |
| d1jr6a_ | 138 | c.37.1.14 (A:) HCV helicase domain {Human hepatiti | 3e-15 | |
| d1jr6a_ | 138 | c.37.1.14 (A:) HCV helicase domain {Human hepatiti | 3e-15 | |
| d1fuka_ | 162 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 5e-15 | |
| d1fuka_ | 162 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 8e-14 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 5e-14 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 3e-11 | |
| d2j0sa2 | 168 | c.37.1.19 (A:244-411) Probable ATP-dependent RNA h | 6e-14 | |
| d2j0sa2 | 168 | c.37.1.19 (A:244-411) Probable ATP-dependent RNA h | 9e-13 | |
| d1oywa3 | 200 | c.37.1.19 (A:207-406) RecQ helicase domain {Escher | 8e-14 | |
| d1oywa3 | 200 | c.37.1.19 (A:207-406) RecQ helicase domain {Escher | 1e-13 | |
| d1t5la2 | 181 | c.37.1.19 (A:415-595) Nucleotide excision repair e | 2e-13 | |
| d1t5la2 | 181 | c.37.1.19 (A:415-595) Nucleotide excision repair e | 3e-11 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 2e-13 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 3e-13 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 8e-13 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 1e-09 | |
| d1yksa2 | 299 | c.37.1.14 (A:325-623) YFV helicase domain {Yellow | 1e-10 | |
| d1yksa2 | 299 | c.37.1.14 (A:325-623) YFV helicase domain {Yellow | 1e-10 | |
| d1t5ia_ | 168 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 2e-10 | |
| d1t5ia_ | 168 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 3e-08 | |
| d1c4oa2 | 174 | c.37.1.19 (A:410-583) Nucleotide excision repair e | 6e-08 | |
| d1c4oa2 | 174 | c.37.1.19 (A:410-583) Nucleotide excision repair e | 6e-08 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 4e-06 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 2e-05 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 4e-05 |
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 117 bits (295), Expect = 2e-30
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 49/236 (20%)
Query: 770 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 829
+ + N+ + I+ A+ KGF+ PT IQ V+P L +IV A TGSGKT +F IP++
Sbjct: 6 FNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 65
Query: 830 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 889
+ N + A+IL PTRELA
Sbjct: 66 LVNE----------------------------------------NNGIEAIILTPTRELA 85
Query: 890 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949
IQV + I +K+A + GG + Q++ L +I+V TPGR+ + I G +L
Sbjct: 86 IQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKN-ANIVVGTPGRILDHINRGTLNLK 144
Query: 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
+ Y ++DE D M+ G +++ IL+ ++ ++ +FSAT+ + N
Sbjct: 145 ---NVKYFILDEADEMLNMGFIKDVEKILNA-----CNKDKRILLFSATMPREILN 192
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 107 bits (267), Expect = 1e-26
Identities = 67/264 (25%), Positives = 109/264 (41%), Gaps = 77/264 (29%)
Query: 153 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 212
+ + N+ + I+ A+ KGF+ PT IQ V+P L +IV A TGSGKT +F IP++
Sbjct: 6 FNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 65
Query: 213 GIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELA 272
+ N + A+IL PTRELA
Sbjct: 66 LVNE----------------------------------------NNGIEAIILTPTRELA 85
Query: 273 IQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332
IQV + I +K+A + GG + Q++ L +I+V TPGR+ + I G +L
Sbjct: 86 IQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKN-ANIVVGTPGRILDHINRGTLNLK 144
Query: 333 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
+ Y ++DE D M+ G +++ IL+
Sbjct: 145 ---NVKYFILDEADEMLNMGFIKDVEKILNA----------------------------- 172
Query: 393 TMTETSQPRQTFVFSATLTHSLKN 416
++ ++ +FSAT+ + N
Sbjct: 173 ----CNKDKRILLFSATMPREILN 192
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 42.0 bits (98), Expect = 2e-04
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 1345 FESRNLRYSWDALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 1404
E N +A+IL PTRELAIQV + I +K+A + GG + Q++ L
Sbjct: 64 IELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKN-A 122
Query: 1405 HILVATPGAL----SLKRIDLAKSIEYL 1428
+I+V TPG + + ++L K+++Y
Sbjct: 123 NIVVGTPGRILDHINRGTLNL-KNVKYF 149
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 109 bits (273), Expect = 3e-27
Identities = 75/239 (31%), Positives = 112/239 (46%), Gaps = 35/239 (14%)
Query: 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 826
+ + + + TI + ++ PT IQ +P A+L +DI+ A+TGSGKT AF IP
Sbjct: 20 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIP-AILEHRDIMACAQTGSGKTAAFLIP 78
Query: 827 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 886
I+ +V + N + LILAPTR
Sbjct: 79 IINHLVCQDLNQQRYSKTAY------------------------------PKCLILAPTR 108
Query: 887 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946
ELAIQ+ + TP++ V GG T Q+R + H+LVATPGRL +FI+
Sbjct: 109 ELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKI 168
Query: 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
L Y+V+DE DRM++ G P+++ I++ M RQT +FSAT ++
Sbjct: 169 S---LEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGIN-RQTLMFSATFPKEIQK 223
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 98.8 bits (245), Expect = 2e-23
Identities = 75/267 (28%), Positives = 112/267 (41%), Gaps = 63/267 (23%)
Query: 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 209
+ + + + TI + ++ PT IQ +P A+L +DI+ A+TGSGKT AF IP
Sbjct: 20 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIP-AILEHRDIMACAQTGSGKTAAFLIP 78
Query: 210 ILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 269
I+ +V + N + LILAPTR
Sbjct: 79 IINHLVCQDLNQQRYSKTAY------------------------------PKCLILAPTR 108
Query: 270 ELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329
ELAIQ+ + TP++ V GG T Q+R + H+LVATPGRL +FI+
Sbjct: 109 ELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKI 168
Query: 330 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389
L Y+V+DE DRM++ G P+++ I++ M
Sbjct: 169 S---LEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGIN------------------ 207
Query: 390 DRVTMTETSQPRQTFVFSATLTHSLKN 416
RQT +FSAT ++
Sbjct: 208 -----------RQTLMFSATFPKEIQK 223
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 39.9 bits (92), Expect = 0.001
Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 1356 ALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGALS 1415
LILAPTRELAIQ+ + TP++ V GG T Q+R + H+LVATPG L
Sbjct: 101 CLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLV 160
Query: 1416 LKRIDLAKSIEYLESKIKKNRPDNWLEKAAKDMDIIIDDENLIQPKANSRENALMS 1471
S+E+ + + + II E P +R+ + S
Sbjct: 161 DFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKII--EESNMPSGINRQTLMFS 214
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 108 bits (271), Expect = 3e-26
Identities = 43/393 (10%), Positives = 92/393 (23%), Gaps = 125/393 (31%)
Query: 802 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 861
++ + G+GKT + I+ + +
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR--------------------------- 37
Query: 862 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 921
L LILAPTR +A +++ + + T
Sbjct: 38 --------------GLRTLILAPTRVVAAEMEEAL-----------RGLPIRYQTPAIRA 72
Query: 922 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRV 981
+ + + + N +++DE + + +
Sbjct: 73 EHTGREIVDLMCHATFTMRLLSPI----RVPNYNLIIMDEAHFTDPASIA--ARGYISTR 126
Query: 982 TMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 1041
+AT S +D + I+
Sbjct: 127 VEMG---EAAGIFMTATPPGS---------------------------RDPFPQSNAPIM 156
Query: 1042 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLK 1101
D +I + + + ++ G+T+ F SI + + L
Sbjct: 157 DEEREI--------------PERSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNG 202
Query: 1102 CSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIP---------GIEHVIHY 1152
+ L + +K D ++ TD++ G + ++ VI
Sbjct: 203 KKVIQLSRKTFDSEYIKTRTNDWDF----VVTTDISEMGANFKAERVIDPRRCMKPVILT 258
Query: 1153 HVPRTSEI----------YIHRSGRTARANNEG 1175
+ R GR R
Sbjct: 259 DGEERVILAGPMPVTHSSAAQRRGRVGRNPKNE 291
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 73.0 bits (178), Expect = 3e-14
Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 23/135 (17%)
Query: 537 YYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS 596
+ ++ G+T+ F SI + + L + L + +K D
Sbjct: 171 HEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDF--- 227
Query: 597 ILLATDVAARGLDIP---------GIEHVIHYHVPRTSEI----------YIHRSGRTAR 637
++ TD++ G + ++ VI + R GR R
Sbjct: 228 -VVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGR 286
Query: 638 ANNEGLTVVLIESDE 652
+ +
Sbjct: 287 NPKNENDQYIYMGEP 301
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 60.3 bits (145), Expect = 4e-10
Identities = 18/170 (10%), Positives = 40/170 (23%), Gaps = 56/170 (32%)
Query: 185 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 244
++ + G+GKT + I+ + +
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR--------------------------- 37
Query: 245 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR 304
L LILAPTR +A +++ + + T
Sbjct: 38 --------------GLRTLILAPTRVVAAEMEEAL-----------RGLPIRYQTPAIRA 72
Query: 305 ILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHF 354
+ + + + N +++DE +
Sbjct: 73 EHTGREIVDLMCHATFTMRLLSPI----RVPNYNLIIMDEAHFTDPASIA 118
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 105 bits (264), Expect = 3e-25
Identities = 19/122 (15%), Positives = 37/122 (30%), Gaps = 15/122 (12%)
Query: 531 EKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN-- 586
E Y L+ GR L+FC+S L L L + + + ++ +
Sbjct: 21 EIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGD 80
Query: 587 --------LDRFRDQNNSILLATDVAARG---LDIPGIEHVIHYHVPRTSEIYIHRSGRT 635
L + ++ + + + +P+ + R GRT
Sbjct: 81 VVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRT 140
Query: 636 AR 637
R
Sbjct: 141 GR 142
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 105 bits (264), Expect = 3e-25
Identities = 19/122 (15%), Positives = 37/122 (30%), Gaps = 15/122 (12%)
Query: 1064 EKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN-- 1119
E Y L+ GR L+FC+S L L L + + + ++ +
Sbjct: 21 EIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGD 80
Query: 1120 --------LDRFRDQNNSILLATDVAARG---LDIPGIEHVIHYHVPRTSEIYIHRSGRT 1168
L + ++ + + + +P+ + R GRT
Sbjct: 81 VVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRT 140
Query: 1169 AR 1170
R
Sbjct: 141 GR 142
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.0 bits (243), Expect = 2e-23
Identities = 58/236 (24%), Positives = 97/236 (41%), Gaps = 51/236 (21%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F + ++RA+ GF+ P+++Q +P + D++ A++G GKT F + L +
Sbjct: 6 FLLKPELLRAIVDCGFEHPSEVQHECIP-QAILGMDVLCQAKSGMGKTAVFVLATLQQLE 64
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
L++ TRELA Q+
Sbjct: 65 PVTGQV---------------------------------------SVLVMCHTRELAFQI 85
Query: 893 QNHILDAGKYTPV-KVACVVGGMSTEKQLRILNKC-PHILVATPGRLWEFIQLGHFHLTE 950
KY P KVA GG+S +K +L K PHI+V TPGR+ + +L
Sbjct: 86 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLK- 144
Query: 951 LYKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
I + ++DE D+M+E +++ I T +Q +FSATL+ ++
Sbjct: 145 --HIKHFILDECDKMLEQLDMRRDVQEIFRM-----TPHEKQVMMFSATLSKEIRP 193
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.0 bits (217), Expect = 4e-20
Identities = 58/263 (22%), Positives = 97/263 (36%), Gaps = 77/263 (29%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F + ++RA+ GF+ P+++Q +P + D++ A++G GKT F + L +
Sbjct: 6 FLLKPELLRAIVDCGFEHPSEVQHECIP-QAILGMDVLCQAKSGMGKTAVFVLATLQQLE 64
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
L++ TRELA Q+
Sbjct: 65 PVTGQV---------------------------------------SVLVMCHTRELAFQI 85
Query: 276 QNHILDAGKYTPV-KVACVVGGMSTEKQLRILNKC-PHILVATPGRLWEFIQLGHFHLTE 333
KY P KVA GG+S +K +L K PHI+V TPGR+ + +L
Sbjct: 86 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLK- 144
Query: 334 LYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVT 393
I + ++DE D+M+E +++ I
Sbjct: 145 --HIKHFILDECDKMLEQL---------------------------DMRRDVQEIFRM-- 173
Query: 394 MTETSQPRQTFVFSATLTHSLKN 416
T +Q +FSATL+ ++
Sbjct: 174 ---TPHEKQVMMFSATLSKEIRP 193
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.4 bits (244), Expect = 2e-23
Identities = 58/253 (22%), Positives = 103/253 (40%), Gaps = 53/253 (20%)
Query: 754 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 813
++++ NE + + N+ E+++R +Y GF+ P+ IQ + + D++ A
Sbjct: 2 VIESNWNEIV----DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAIL-PCIKGYDVIAQA 56
Query: 814 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 873
++G+GKT F I IL I L+
Sbjct: 57 QSGTGKTATFAISILQQIELDLKATQ---------------------------------- 82
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACV-VGGMSTEKQLRILNKCPHILVA 932
AL+LAPTRELA Q+Q ++ G Y G + ++ + PHI+V
Sbjct: 83 -----ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 137
Query: 933 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQT 992
TPGR+++ + + I V+DE D M+ G ++ +I + + Q
Sbjct: 138 TPGRVFDMLNRRYLSPK---YIKMFVLDEADEMLSRGFKDQIYDIFQK-----LNSNTQV 189
Query: 993 FVFSATLTHSLKN 1005
+ SAT+ +
Sbjct: 190 VLLSATMPSDVLE 202
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.0 bits (217), Expect = 7e-20
Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 53/249 (21%)
Query: 137 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 196
++++ NE + + N+ E+++R +Y GF+ P+ IQ + + D++ A
Sbjct: 2 VIESNWNEIV----DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAIL-PCIKGYDVIAQA 56
Query: 197 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 256
++G+GKT F I IL I L+
Sbjct: 57 QSGTGKTATFAISILQQIELDLKATQ---------------------------------- 82
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACV-VGGMSTEKQLRILNKCPHILVA 315
AL+LAPTRELA Q+Q ++ G Y G + ++ + PHI+V
Sbjct: 83 -----ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 137
Query: 316 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQT 375
TPGR+++ + + I V+DE D M+ G ++ +I + + Q
Sbjct: 138 TPGRVFDMLNRRYLSPK---YIKMFVLDEADEMLSRGFKDQIYDIFQK-----LNSNTQV 189
Query: 376 MIESGHFPE 384
++ S P
Sbjct: 190 VLLSATMPS 198
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.0 bits (243), Expect = 2e-23
Identities = 60/252 (23%), Positives = 109/252 (43%), Gaps = 49/252 (19%)
Query: 754 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 813
+V+ +E++ V + + E ++R +Y GF+ P+ IQ + ++ +D++ +
Sbjct: 4 KVEFETSEEVDV-TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIK-QIIKGRDVIAQS 61
Query: 814 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 873
++G+GKT F I +L + ++
Sbjct: 62 QSGTGKTATFSISVLQCLDIQVRETQ---------------------------------- 87
Query: 874 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 933
ALILAPTRELA+Q+Q +L G Y V+ +GG + + +R L+ H++ T
Sbjct: 88 -----ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGT 142
Query: 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTF 993
PGR+++ I+ I LV+DE D M+ G ++ ++ Q
Sbjct: 143 PGRVFDMIRRRSLR---TRAIKMLVLDEADEMLNKGFKEQIYDVYRY-----LPPATQVV 194
Query: 994 VFSATLTHSLKN 1005
+ SATL H +
Sbjct: 195 LISATLPHEILE 206
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.2 bits (215), Expect = 1e-19
Identities = 60/280 (21%), Positives = 109/280 (38%), Gaps = 77/280 (27%)
Query: 137 EVDTSNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAA 196
+V+ +E++ V + + E ++R +Y GF+ P+ IQ + ++ +D++ +
Sbjct: 4 KVEFETSEEVDV-TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIK-QIIKGRDVIAQS 61
Query: 197 ETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKT 256
++G+GKT F I +L + ++
Sbjct: 62 QSGTGKTATFSISVLQCLDIQVRETQ---------------------------------- 87
Query: 257 RNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVAT 316
ALILAPTRELA+Q+Q +L G Y V+ +GG + + +R L+ H++ T
Sbjct: 88 -----ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGT 142
Query: 317 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTM 376
PGR+++ I+ I LV+DE D M+ G ++ ++
Sbjct: 143 PGRVFDMIRRRSLR---TRAIKMLVLDEADEMLNKGFKEQIYDVYRY------------- 186
Query: 377 IESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 416
Q + SATL H +
Sbjct: 187 --------------------LPPATQVVLISATLPHEILE 206
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 97.2 bits (241), Expect = 3e-23
Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 52/248 (20%)
Query: 758 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 817
+N + + + ++ + E ++R ++ GF+ P+ IQ + ++ D++ A++G+
Sbjct: 3 TNYDKV---VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIM-PIIEGHDVLAQAQSGT 58
Query: 818 GKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL 877
GKT F I L I ++ P
Sbjct: 59 GKTGTFSIAALQRIDTSVKAP--------------------------------------- 79
Query: 878 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 937
AL+LAPTRELA+Q+Q ++ + +KV +GG S + L I+V TPGR+
Sbjct: 80 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRV 138
Query: 938 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSA 997
++ IQ F KI ++DE D M+ SG ++ I Q + SA
Sbjct: 139 FDNIQRRRFRTD---KIKMFILDEADEMLSSGFKEQIYQIFTL-----LPPTTQVVLLSA 190
Query: 998 TLTHSLKN 1005
T+ + +
Sbjct: 191 TMPNDVLE 198
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 86.4 bits (213), Expect = 2e-19
Identities = 59/276 (21%), Positives = 104/276 (37%), Gaps = 80/276 (28%)
Query: 141 SNNEDMFVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGS 200
+N + + + ++ + E ++R ++ GF+ P+ IQ + ++ D++ A++G+
Sbjct: 3 TNYDKV---VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIM-PIIEGHDVLAQAQSGT 58
Query: 201 GKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKL 260
GKT F I L I ++ P
Sbjct: 59 GKTGTFSIAALQRIDTSVKAP--------------------------------------- 79
Query: 261 YALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL 320
AL+LAPTRELA+Q+Q ++ + +KV +GG S + L I+V TPGR+
Sbjct: 80 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRV 138
Query: 321 WEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESG 380
++ IQ F KI ++DE D M+ SG ++ I
Sbjct: 139 FDNIQRRRFRTD---KIKMFILDEADEMLSSGFKEQIYQIFTL----------------- 178
Query: 381 HFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 416
Q + SAT+ + +
Sbjct: 179 ----------------LPPTTQVVLLSATMPNDVLE 198
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 94.5 bits (234), Expect = 7e-22
Identities = 38/249 (15%), Positives = 90/249 (36%), Gaps = 24/249 (9%)
Query: 1059 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 1118
+ +DE S L + + +++ + + + + L + +
Sbjct: 7 VAVNDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKG 60
Query: 1119 NLDRFRDQNNSILLAT----DVAARGLDIP-GIEHVIHYHVPRTSEIYIHRSGRTARANN 1173
+ ++F + L+ T RGLD+P I + P + +
Sbjct: 61 DYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSP 116
Query: 1174 EGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLESKIK 1233
+ + L+ + ++ ++E+ +D + E + ++ K AK + E ++
Sbjct: 117 QMVKLLAYLYRNVDEIERLLPAVERHID----EVREILKKVMGKERPQAKDVVVREGEVI 172
Query: 1234 KNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDF---PIDESV 1290
++ SGRT+R GLT S + ++ ++ ++ L D IDE
Sbjct: 173 FPDLRTYIQGSGRTSRLFAGGLTKGA--SFLLEDDSELLSAFIERAKLYDIEFKSIDEVD 230
Query: 1291 LSLIKKRID 1299
+ + +D
Sbjct: 231 FEKLSRELD 239
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 87.5 bits (216), Expect = 2e-19
Identities = 23/222 (10%), Positives = 67/222 (30%), Gaps = 16/222 (7%)
Query: 526 LCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLK 585
+ +DE S L + + +++ + + + + L + +
Sbjct: 7 VAVNDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKG 60
Query: 586 NLDRFRDQNNSILLAT----DVAARGLDIP-GIEHVIHYHVPRTSEIYIHRSGRTARANN 640
+ ++F + L+ T RGLD+P I + P + +
Sbjct: 61 DYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSP 116
Query: 641 EGLTVVLIESDEIPLKTKF-NLQEEENNEEEERAEADKEKTEDINVTVSSKKKKLKRKQN 699
+ + ++ + + E +E E + K V ++ ++
Sbjct: 117 QMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDL 176
Query: 700 PSQVEVSELSANTNDPDDQVNKTEEIQSDEPHSKKLKQKKKK 741
+ ++ S ++ + ++ D ++ K
Sbjct: 177 RTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 218
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.6 bits (221), Expect = 1e-20
Identities = 52/238 (21%), Positives = 107/238 (44%), Gaps = 49/238 (20%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
E+ + + ++ +++ G++ P+ IQ +P L+ +DI+ A+ G+GK+ A+ IP+L
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIP-IALSGRDILARAKNGTGKSGAYLIPLL 62
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
+ K ++ + A+++ PTREL
Sbjct: 63 ERLDLK---------------------------------------KDNIQAMVIVPTREL 83
Query: 889 AIQVQNHILDAGKY-TPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 947
A+QV + K+ KV GG + + L+ H+++ATPGR+ + I+ G
Sbjct: 84 ALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAK 143
Query: 948 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
+ + +V+DE D+++ +++I+ + RQ ++SAT S++
Sbjct: 144 ---VDHVQMIVLDEADKLLSQDFVQIMEDIILT-----LPKNRQILLYSATFPLSVQK 193
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.8 bits (193), Expect = 6e-17
Identities = 53/266 (19%), Positives = 108/266 (40%), Gaps = 77/266 (28%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
E+ + + ++ +++ G++ P+ IQ +P L+ +DI+ A+ G+GK+ A+ IP+L
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIP-IALSGRDILARAKNGTGKSGAYLIPLL 62
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
+ K ++ + A+++ PTREL
Sbjct: 63 ERLDLK---------------------------------------KDNIQAMVIVPTREL 83
Query: 272 AIQVQNHILDAGK-YTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFH 330
A+QV + K KV GG + + L+ H+++ATPGR+ + I+ G
Sbjct: 84 ALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAK 143
Query: 331 LTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390
+ + +V+DE D+++ +++I+ + P+
Sbjct: 144 ---VDHVQMIVLDEADKLLSQDFVQIMEDIILTL-------PKN---------------- 177
Query: 391 RVTMTETSQPRQTFVFSATLTHSLKN 416
RQ ++SAT S++
Sbjct: 178 ----------RQILLYSATFPLSVQK 193
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 90.3 bits (223), Expect = 4e-20
Identities = 48/273 (17%), Positives = 95/273 (34%), Gaps = 17/273 (6%)
Query: 929 ILVATPGRLWEFIQLGHFHLTELYK--INYLVIDETDRMIESGHFPELKNILDRVTMTET 986
+ V P E +L L + K +++ + I I++
Sbjct: 7 VRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGN 66
Query: 987 SQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEK 1046
R ++ A L +++ L + Q S + + + S +I
Sbjct: 67 HDLRGLLLYHAMAL-KLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRM 125
Query: 1047 IGITKTLTESKILC----KHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLK 1101
L ++K + K D+ + + + + +VF N + K++ L
Sbjct: 126 KKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDG 185
Query: 1102 CSPLPLHAS--------MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 1153
++QR++ LD F ++L+AT V GLD+P ++ V+ Y
Sbjct: 186 IKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYE 245
Query: 1154 VPRTSEIYIHRSGRTARANNEGLTLVLIESDEI 1186
++ I R GRT R G ++L+
Sbjct: 246 PVPSAIRSIQRRGRTGRH-MPGRVIILMAKGTR 277
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 86.5 bits (213), Expect = 8e-19
Identities = 44/245 (17%), Positives = 86/245 (35%), Gaps = 24/245 (9%)
Query: 425 SKSKKVSKGDPS--IKRLQDLLNIKSPKIVDLTEKIGITKTLTES-KILCKHDEKDSYLY 481
S S + K + + + + + + + L + L + ++L Y
Sbjct: 41 SSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAY 100
Query: 482 YFILQHPGRTLCEEIQDLLNIKSPKIVDLTEKIGITKTLTESKILC----KHDEKDSYLY 537
L EE + S +I L ++K + K D+ +
Sbjct: 101 IK-------KLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIR 153
Query: 538 YFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS--------MNQRQRLKNLD 588
+ + + +VF N + K++ L ++QR++ LD
Sbjct: 154 EQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILD 213
Query: 589 RFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLI 648
F ++L+AT V GLD+P ++ V+ Y ++ I R GRT R G ++L+
Sbjct: 214 EFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH-MPGRVIILM 272
Query: 649 ESDEI 653
Sbjct: 273 AKGTR 277
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 87.6 bits (216), Expect = 1e-19
Identities = 35/240 (14%), Positives = 62/240 (25%), Gaps = 62/240 (25%)
Query: 780 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPT 839
++K P IQ M +L ++ A TG GKT L
Sbjct: 33 FVEFFRKCVGEPRAIQKMWAK-RILRKESFAATAPTGVGKTSFGLAMSL----------- 80
Query: 840 EEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDA 899
++ PT L IQ I
Sbjct: 81 -------------------------------FLALKGKRCYVIFPTSLLVIQAAETIRKY 109
Query: 900 GKYTPVKVACVVGG------MSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 953
+ V ++G ++ + I++ T L + H EL
Sbjct: 110 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSK-------HYRELGH 162
Query: 954 INYLVIDETDRMIESGH----FPELKNILDRVT--MTETSQPRQTFVFSATLTHSLKNSL 1007
+++ +D+ D ++++ L + V +AT K L
Sbjct: 163 FDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAEL 222
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 85.0 bits (209), Expect = 8e-19
Identities = 39/262 (14%), Positives = 69/262 (26%), Gaps = 78/262 (29%)
Query: 163 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPT 222
++K P IQ M +L ++ A TG GKT L
Sbjct: 33 FVEFFRKCVGEPRAIQKMWAK-RILRKESFAATAPTGVGKTSFGLAMSL----------- 80
Query: 223 EEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDA 282
++ PT L IQ I
Sbjct: 81 -------------------------------FLALKGKRCYVIFPTSLLVIQAAETIRKY 109
Query: 283 GKYTPVKVACVVGG------MSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 336
+ V ++G ++ + I++ T L + H EL
Sbjct: 110 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSK-------HYRELGH 162
Query: 337 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTE 396
+++ +D+ D ++++ KN+ + + G +LK
Sbjct: 163 FDFIFVDDVDAILKAS-----KNVDKLLHLL------------GFHYDLKTKSWV----- 200
Query: 397 TSQPRQTFVFSATLTHSLKNSL 418
V +AT K L
Sbjct: 201 GEARGCLMVSTATAKKGKKAEL 222
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 84.7 bits (208), Expect = 6e-19
Identities = 59/233 (25%), Positives = 96/233 (41%), Gaps = 48/233 (20%)
Query: 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 832
F + ++ +++ GF+ P+ IQ +P + +DI+ A+ G+GKT AF IP L +
Sbjct: 6 FYLKRELLMGIFEAGFEKPSPIQEEAIP-VAITGRDILARAKNGTGKTAAFVIPTLEKVK 64
Query: 833 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 892
K NK+ ALI+ PTRELA+Q
Sbjct: 65 PK---------------------------------------LNKIQALIMVPTRELALQT 85
Query: 893 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 952
+ GK+ + GG + + LN+ HILV TPGR+ + L
Sbjct: 86 SQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVAD---LS 142
Query: 953 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
+ ++DE D+M+ ++ IL Q+ +FSAT ++K
Sbjct: 143 DCSLFIMDEADKMLSRDFKTIIEQILSF-----LPPTHQSLLFSATFPLTVKE 190
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.9 bits (180), Expect = 3e-15
Identities = 59/261 (22%), Positives = 96/261 (36%), Gaps = 76/261 (29%)
Query: 156 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215
F + ++ +++ GF+ P+ IQ +P + +DI+ A+ G+GKT AF IP L +
Sbjct: 6 FYLKRELLMGIFEAGFEKPSPIQEEAIP-VAITGRDILARAKNGTGKTAAFVIPTLEKVK 64
Query: 216 NKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQV 275
K NK+ ALI+ PTRELA+Q
Sbjct: 65 PK---------------------------------------LNKIQALIMVPTRELALQT 85
Query: 276 QNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELY 335
+ GK+ + GG + + LN+ HILV TPGR+ + L
Sbjct: 86 SQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVAD---LS 142
Query: 336 KINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMT 395
+ ++DE D+M+ ++ IL
Sbjct: 143 DCSLFIMDEADKMLSRDFKTIIEQILSF-------------------------------- 170
Query: 396 ETSQPRQTFVFSATLTHSLKN 416
Q+ +FSAT ++K
Sbjct: 171 -LPPTHQSLLFSATFPLTVKE 190
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 82.3 bits (202), Expect = 1e-18
Identities = 43/151 (28%), Positives = 75/151 (49%)
Query: 1051 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 1110
+ +S + +E+ L + LVFC + K L +L + +H
Sbjct: 2 ANIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGD 61
Query: 1111 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 1170
++Q QR K + F+ + IL+ATDV +RG+D+ + VI+YH+P+ E Y+HR GRT R
Sbjct: 62 LSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGR 121
Query: 1171 ANNEGLTLVLIESDEIPLYIKMFNSLEKKVD 1201
A +G + +I E + +++ K+
Sbjct: 122 AGKKGKAISIINRREYKKLRYIERAMKLKIK 152
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 80.4 bits (197), Expect = 5e-18
Identities = 42/138 (30%), Positives = 69/138 (50%)
Query: 518 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHAS 577
+ +S + +E+ L + LVFC + K L +L + +H
Sbjct: 2 ANIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGD 61
Query: 578 MNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTAR 637
++Q QR K + F+ + IL+ATDV +RG+D+ + VI+YH+P+ E Y+HR GRT R
Sbjct: 62 LSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGR 121
Query: 638 ANNEGLTVVLIESDEIPL 655
A +G + +I E
Sbjct: 122 AGKKGKAISIINRREYKK 139
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 80.1 bits (196), Expect = 3e-17
Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 44/237 (18%)
Query: 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 828
++ +F II A+ F PT+IQ ++P L + +VG ++TG+GKT A+ +PI+
Sbjct: 2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIP-GALRGESMVGQSQTGTGKTHAYLLPIM 60
Query: 829 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 888
+ + + A ++
Sbjct: 61 E-----------------------------------KIKPERAEVQAVITAPTRELATQI 85
Query: 889 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948
+ K + C++GG +K L LN PHI++ TPGR+ +FI+
Sbjct: 86 YHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALD- 144
Query: 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005
++ + LV+DE D M++ G ++ I R + Q VFSAT+ LK
Sbjct: 145 --VHTAHILVVDEADLMLDMGFITDVDQIAAR-----MPKDLQMLVFSATIPEKLKP 194
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 69.3 bits (168), Expect = 1e-13
Identities = 56/265 (21%), Positives = 96/265 (36%), Gaps = 72/265 (27%)
Query: 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 211
++ +F II A+ F PT+IQ ++P L + +VG ++TG+GKT A+ +PI+
Sbjct: 2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIP-GALRGESMVGQSQTGTGKTHAYLLPIM 60
Query: 212 TGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTREL 271
+ + + A ++
Sbjct: 61 E-----------------------------------KIKPERAEVQAVITAPTRELATQI 85
Query: 272 AIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 331
+ K + C++GG +K L LN PHI++ TPGR+ +FI+
Sbjct: 86 YHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALD- 144
Query: 332 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391
++ + LV+DE D M++ G ++ I R
Sbjct: 145 --VHTAHILVVDEADLMLDMGFITDVDQIAAR---------------------------- 174
Query: 392 VTMTETSQPRQTFVFSATLTHSLKN 416
+ Q VFSAT+ LK
Sbjct: 175 -----MPKDLQMLVFSATIPEKLKP 194
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 72.0 bits (176), Expect = 3e-15
Identities = 29/136 (21%), Positives = 41/136 (30%), Gaps = 14/136 (10%)
Query: 522 ESKILCKHDEKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 579
E L E Y L+ GR L+FC+S L L L + + + ++
Sbjct: 11 EEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLD 70
Query: 580 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPG---IEHVIHYHVPRTSEIYIHRSGRTA 636
N D ATD G I+ P+ + R GRT
Sbjct: 71 VSVIPTNGDVVVV-------ATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTG 123
Query: 637 RANNEGLTVVLIESDE 652
R G + E
Sbjct: 124 R-GKPG-IYRFVAPGE 137
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 72.0 bits (176), Expect = 3e-15
Identities = 28/131 (21%), Positives = 39/131 (29%), Gaps = 12/131 (9%)
Query: 1055 ESKILCKHDEKDSYLYYFILQH--PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMN 1112
E L E Y L+ GR L+FC+S L L L + + + ++
Sbjct: 11 EEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLD 70
Query: 1113 QRQRLKNLDRFRDQNNSILLATDVAARGLDIPG---IEHVIHYHVPRTSEIYIHRSGRTA 1169
N D ATD G I+ P+ + R GRT
Sbjct: 71 VSVIPTNGDVVVV-------ATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTG 123
Query: 1170 RANNEGLTLVL 1180
R V
Sbjct: 124 RGKPGIYRFVA 134
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.3 bits (176), Expect = 5e-15
Identities = 38/155 (24%), Positives = 78/155 (50%), Gaps = 3/155 (1%)
Query: 1059 LCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 1117
+ + + K L + ++FCN+ V+ LT L K + +++ + Q++R
Sbjct: 8 VEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERD 67
Query: 1118 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 1177
+ FR ++ IL++TD+ ARG+D+ + VI+Y +P E YIHR GR R +G+
Sbjct: 68 TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA 127
Query: 1178 LVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVL 1212
+ + ++++ ++ + + + P D + L
Sbjct: 128 INFVTNEDVGAMRELEKFYSTQ--IEELPSDIATL 160
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.8 bits (167), Expect = 8e-14
Identities = 35/131 (26%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Query: 526 LCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584
+ + + K L + ++FCN+ V+ LT L K + +++ + Q++R
Sbjct: 8 VEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERD 67
Query: 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT 644
+ FR ++ IL++TD+ ARG+D+ + VI+Y +P E YIHR GR R +G+
Sbjct: 68 TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA 127
Query: 645 VVLIESDEIPL 655
+ + ++++
Sbjct: 128 INFVTNEDVGA 138
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 70.4 bits (171), Expect = 5e-14
Identities = 31/226 (13%), Positives = 67/226 (29%), Gaps = 52/226 (23%)
Query: 774 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 833
+I + L ++G + Q+ + + + K+++ A T +GKTL + ++
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVE-KVFSGKNLLLAMPTAAGKTLLAEMAMVREA-- 65
Query: 834 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 893
+L + P R LA +
Sbjct: 66 ----------------------------------------IKGGKSLYVVPLRALAGEKY 85
Query: 894 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 953
K S ++ I+V T + L + +
Sbjct: 86 ESFKKWEKIGLRIGISTGDYESRDEH----LGDCDIIVTTSEKADS---LIRNRASWIKA 138
Query: 954 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999
++ LV+DE + L+ ++ + M ++ + SAT
Sbjct: 139 VSCLVVDEIHLLDSEKRGATLEILVTK--MRRMNKALRVIGLSATA 182
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 62.3 bits (150), Expect = 3e-11
Identities = 31/236 (13%), Positives = 71/236 (30%), Gaps = 52/236 (22%)
Query: 157 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 216
+I + L ++G + Q+ + + + K+++ A T +GKTL + ++
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVE-KVFSGKNLLLAMPTAAGKTLLAEMAMVREA-- 65
Query: 217 KLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQ 276
+L + P R LA +
Sbjct: 66 ----------------------------------------IKGGKSLYVVPLRALAGEKY 85
Query: 277 NHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYK 336
K S ++ I+V T + L + +
Sbjct: 86 ESFKKWEKIGLRIGISTGDYESRDEH----LGDCDIIVTTSEKADS---LIRNRASWIKA 138
Query: 337 INYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRV 392
++ LV+DE + L+ ++ + M ++ + + S P + I + +
Sbjct: 139 VSCLVVDEIHLLDSEKRGATLEILVTK--MRRMNKALRVIGLSATAPNVTEIAEWL 192
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.2 bits (168), Expect = 6e-14
Identities = 39/151 (25%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 1061 KHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 1119
+ + K L + ++FCN+ V LT+ + + +H M Q++R
Sbjct: 17 REEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESI 76
Query: 1120 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV 1179
+ FR + +L++TDV ARGLD+P + +I+Y +P E+YIHR GR+ R +G+ +
Sbjct: 77 MKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAIN 136
Query: 1180 LIESDEIPLYIKMFNSLEKKVDLPDFPIDES 1210
+++D+I + + + + + P++ +
Sbjct: 137 FVKNDDIRILRDIEQYYSTQ--IDEMPMNVA 165
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.7 bits (159), Expect = 9e-13
Identities = 38/129 (29%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Query: 528 KHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKN 586
+ + K L + ++FCN+ V LT+ + + +H M Q++R
Sbjct: 17 REEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESI 76
Query: 587 LDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVV 646
+ FR + +L++TDV ARGLD+P + +I+Y +P E+YIHR GR+ R +G+ +
Sbjct: 77 MKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAIN 136
Query: 647 LIESDEIPL 655
+++D+I +
Sbjct: 137 FVKNDDIRI 145
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 69.7 bits (169), Expect = 8e-14
Identities = 27/137 (19%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 1058 ILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 1116
+L + + L ++ + G +++CNS + V+ L S HA + R
Sbjct: 10 MLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVR 69
Query: 1117 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
++F+ + I++AT G++ P + V+H+ +PR E Y +GR R
Sbjct: 70 ADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAE 129
Query: 1177 TLVLIESDEIPLYIKMF 1193
++ + ++ +
Sbjct: 130 AMLFYDPADMAWLRRCL 146
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 68.9 bits (167), Expect = 1e-13
Identities = 27/144 (18%), Positives = 61/144 (42%), Gaps = 1/144 (0%)
Query: 525 ILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
+L + + L ++ + G +++CNS + V+ L S HA + R
Sbjct: 10 MLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVR 69
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
++F+ + I++AT G++ P + V+H+ +PR E Y +GR R
Sbjct: 70 ADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAE 129
Query: 644 TVVLIESDEIPLKTKFNLQEEENN 667
++ + ++ + ++ +
Sbjct: 130 AMLFYDPADMAWLRRCLEEKPQGQ 153
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Score = 68.3 bits (166), Expect = 2e-13
Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 10/165 (6%)
Query: 536 LYYFILQH---PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 592
L I + RTLV + + LT L LH+ + +R++ + R
Sbjct: 20 LIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRL 79
Query: 593 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRS--GRTARANNEGLTVVLIES 650
+L+ ++ GLDIP + V + + RS RA V++ +
Sbjct: 80 GKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIMYA 139
Query: 651 DEIPLKTKFNLQEEENNEEEERAEADKEKTEDINVTVSSKKKKLK 695
D I + +Q E + R +E + + KK+++
Sbjct: 140 DTITKSMEIAIQ-----ETKRRRAIQEEYNRKHGIVPRTVKKEIR 179
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Score = 61.7 bits (149), Expect = 3e-11
Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 3/106 (2%)
Query: 1069 LYYFILQH---PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRD 1125
L I + RTLV + + LT L LH+ + +R++ + R
Sbjct: 20 LIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRL 79
Query: 1126 QNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARA 1171
+L+ ++ GLDIP + V + + RS
Sbjct: 80 GKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 125
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 68.8 bits (167), Expect = 2e-13
Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 6/126 (4%)
Query: 524 KILCKHDEKDSYLYYFILQHPG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQ 582
+I K L + +H + ++F V R+++ + ++ +
Sbjct: 72 RIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISK-----VFLIPAITHRTSREE 126
Query: 583 RLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 642
R + L+ FR ++++ V G+D+P + ++ YI R GR R +
Sbjct: 127 REEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGK 186
Query: 643 LTVVLI 648
VL
Sbjct: 187 KEAVLY 192
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 67.6 bits (164), Expect = 3e-13
Identities = 27/166 (16%), Positives = 59/166 (35%), Gaps = 6/166 (3%)
Query: 1017 KKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQH 1076
+ + +++R +D I D + +I K L + +H
Sbjct: 32 QFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH 91
Query: 1077 PG-RTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 1135
+ ++F V R+++ + ++ +R + L+ FR ++++
Sbjct: 92 RKDKIIIFTRHNELVYRISK-----VFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQ 146
Query: 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLI 1181
V G+D+P + ++ YI R GR R + VL
Sbjct: 147 VLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 192
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 67.0 bits (162), Expect = 8e-13
Identities = 34/250 (13%), Positives = 64/250 (25%), Gaps = 55/250 (22%)
Query: 767 MAEWVKFNIPETIIRALYQK-GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 825
MA+ N+ + L + G++ Q ++ +L+ +D + TG GK+L + I
Sbjct: 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIID-TVLSGRDCLVVMPTGGGKSLCYQI 59
Query: 826 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 885
P ++++P
Sbjct: 60 PA---------------------------------------------LLLNGLTVVVSPL 74
Query: 886 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 945
L + + G + E +L P RL L H
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEH 134
Query: 946 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS--- 1002
+ L +DE + + GH + +AT +
Sbjct: 135 LAH---WNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPT-LPFMALTATADDTTRQ 190
Query: 1003 -LKNSLNLKK 1011
+ L L
Sbjct: 191 DIVRLLGLND 200
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 57.3 bits (137), Expect = 1e-09
Identities = 32/250 (12%), Positives = 67/250 (26%), Gaps = 53/250 (21%)
Query: 150 MAEWVKFNIPETIIRALYQK-GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 208
MA+ N+ + L + G++ Q ++ +L+ +D + TG GK+L + I
Sbjct: 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIID-TVLSGRDCLVVMPTGGGKSLCYQI 59
Query: 209 PILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 268
P ++++P
Sbjct: 60 PA---------------------------------------------LLLNGLTVVVSPL 74
Query: 269 RELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGH 328
L + + G + E +L P RL L H
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEH 134
Query: 329 FHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE--LK 386
+ L +DE + + GH + M + + +
Sbjct: 135 LA---HWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPT-LPFMALTATADDTTRQ 190
Query: 387 NILDRVTMTE 396
+I+ + + +
Sbjct: 191 DIVRLLGLND 200
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 61.9 bits (150), Expect = 1e-10
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 539 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598
+IL T F SI + + L S + L+ + + + + +
Sbjct: 31 WILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFI 86
Query: 599 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 633
LATD+A G ++ +E V+ +
Sbjct: 87 LATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRK 120
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 61.9 bits (150), Expect = 1e-10
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 1072 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131
+IL T F SI + + L S + L+ + + + + +
Sbjct: 31 WILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFI 86
Query: 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSG 1166
LATD+A G ++ +E V+ +
Sbjct: 87 LATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRK 120
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.9 bits (141), Expect = 2e-10
Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 6/163 (3%)
Query: 1058 ILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 1116
+ K +EK+ L+ + + ++F S+ L QLL + +H M Q +R
Sbjct: 7 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 66
Query: 1117 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 1176
L +F+D IL+AT++ RG+DI + +Y +P S+ Y+HR R R +GL
Sbjct: 67 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 126
Query: 1177 TLVLIESDEIPLYIKMFNSLEK--KVDLPDFPIDESVLSLIKK 1217
+ + + K+ N ++ +V++ + P + + S I++
Sbjct: 127 AITFVSDEND---AKILNDVQDRFEVNISELPDEIDISSYIEQ 166
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (125), Expect = 3e-08
Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 6/156 (3%)
Query: 525 ILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR 583
+ K +EK+ L+ + + ++F S+ L QLL + +H M Q +R
Sbjct: 7 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 66
Query: 584 LKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGL 643
L +F+D IL+AT++ RG+DI + +Y +P S+ Y+HR R R +GL
Sbjct: 67 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 126
Query: 644 TVVLIESDEIP-----LKTKFNLQEEENNEEEERAE 674
+ + + ++ +F + E +E + +
Sbjct: 127 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISS 162
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Score = 52.0 bits (124), Expect = 6e-08
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 545 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604
RTLV ++ + LT L LH ++ +R + R + L+ ++
Sbjct: 32 ERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLL 91
Query: 605 ARGLDIPGIEHVIHYHV-----PRTSEIYIHRSGRTAR 637
GLDIP + V R+ I GR AR
Sbjct: 92 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 129
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Score = 52.0 bits (124), Expect = 6e-08
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 1078 GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 1137
RTLV ++ + LT L LH ++ +R + R + L+ ++
Sbjct: 32 ERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLL 91
Query: 1138 ARGLDIPGIEHVIHYHV-----PRTSEIYIHRSGRTAR 1170
GLDIP + V R+ I GR AR
Sbjct: 92 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 129
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 47.2 bits (111), Expect = 4e-06
Identities = 31/194 (15%), Positives = 60/194 (30%), Gaps = 41/194 (21%)
Query: 1041 VDLTEKIGITKTLTESKILCKHDEKDSY--LYYFILQHPGRTLVFCNSISSVKRLTQLLT 1098
V L E + TL + + L + G LVF ++ ++ L+
Sbjct: 2 VPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLS 61
Query: 1099 MLKCSPLP------------------------------LHASMNQRQRLKNLDRFRDQNN 1128
+ + HA + QR D FR N
Sbjct: 62 AITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNI 121
Query: 1129 SILLATDVAARGLDIPGIEHVIH-------YHVPRTSEIYIHRSGRTARAN--NEGLTLV 1179
+++AT A G+++P ++ Y Y +GR R G ++
Sbjct: 122 KVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAII 181
Query: 1180 LIESDEIPLYIKMF 1193
++ + + +K +
Sbjct: 182 IVGKRDREIAVKRY 195
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 44.9 bits (105), Expect = 2e-05
Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 41/186 (22%)
Query: 508 VDLTEKIGITKTLTESKILCKHDEKDSY--LYYFILQHPGRTLVFCNSISSVKRLTQLLT 565
V L E + TL + + L + G LVF ++ ++ L+
Sbjct: 2 VPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLS 61
Query: 566 MLKCSPLP------------------------------LHASMNQRQRLKNLDRFRDQNN 595
+ + HA + QR D FR N
Sbjct: 62 AITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNI 121
Query: 596 SILLATDVAARGLDIPGIEHVIH-------YHVPRTSEIYIHRSGRTARAN--NEGLTVV 646
+++AT A G+++P ++ Y Y +GR R G ++
Sbjct: 122 KVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAII 181
Query: 647 LIESDE 652
++ +
Sbjct: 182 IVGKRD 187
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 44.0 bits (102), Expect = 4e-05
Identities = 31/247 (12%), Positives = 69/247 (27%), Gaps = 54/247 (21%)
Query: 783 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 842
+ ++ P Q ++ + + TG GKTL + +
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCK--ETNCLIVLPTGLGKTLIAMMIAEYRLT---------- 49
Query: 843 ENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY 902
+ L+LAPT+ L +Q
Sbjct: 50 -------------------------------KYGGKVLMLAPTKPLVLQHAESFRRLFNL 78
Query: 903 TPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDET 962
P K+ + G S E++ + + I L ++ +V DE
Sbjct: 79 PPEKIVALTGEKSPEERSKAWARAKVI----VATPQTIENDLLAGRISLEDVSLIVFDEA 134
Query: 963 DRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKK--GQSKSKKVS 1020
R + + + + R ++ +A+ + + + + G + S
Sbjct: 135 HRAVGNYAYVFIAREYKR-----QAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRS 189
Query: 1021 KGDPSIK 1027
+ P ++
Sbjct: 190 ENSPDVR 196
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1493 | |||
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 100.0 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 100.0 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 100.0 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 100.0 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 100.0 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 100.0 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 100.0 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 100.0 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 100.0 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 100.0 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 100.0 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.98 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.98 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.97 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.97 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.97 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.96 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.96 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.94 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.94 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.94 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.94 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.93 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.93 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.93 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.93 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.92 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.92 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.92 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.92 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.91 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.9 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.89 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.88 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.87 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.87 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.87 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.87 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.87 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.87 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.86 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.85 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.83 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.82 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.81 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.81 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.8 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.78 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.76 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.75 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.73 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.73 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.71 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.7 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.68 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.68 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.67 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.67 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.6 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.59 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.59 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.56 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.55 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.54 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.54 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.52 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.49 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.49 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.48 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.47 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.4 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.37 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.27 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.27 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.14 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.07 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.04 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.03 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 98.93 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 98.91 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.6 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.51 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.41 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.38 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 98.16 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 98.13 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 98.12 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 98.09 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 98.05 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 97.99 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 95.94 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 95.86 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 95.86 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 95.66 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 94.65 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 94.31 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 91.21 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 90.88 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.57 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 90.54 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 90.09 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.01 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 90.01 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 89.97 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 89.73 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 89.51 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 89.28 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 89.27 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 87.69 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 87.62 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 87.46 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 87.44 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 86.18 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 85.62 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 85.2 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 84.7 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 84.6 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 83.9 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 83.9 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 83.79 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 83.2 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 80.04 |
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-36 Score=329.50 Aligned_cols=194 Identities=30% Similarity=0.559 Sum_probs=175.6
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
..+|++|+|++.++++|+++||..|||+|.++||.+ ..|+|++++||||||||+||++|+++++..
T Consensus 16 ~~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~i-l~g~dvi~~a~TGSGKTlayllPil~~l~~------------- 81 (222)
T d2j0sa1 16 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQI-IKGRDVIAQSQSGTGKTATFSISVLQCLDI------------- 81 (222)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHH-HTTCCEEEECCTTSSHHHHHHHHHHHTCCT-------------
T ss_pred CCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-HCCCCeEEEcCcchhhhhhhcccccccccc-------------
Confidence 457999999999999999999999999999999964 478999999999999999999999988743
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
....++++|++||||||.|+++.++.++++.++++..++||.....+...+..+
T Consensus 82 --------------------------~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~ 135 (222)
T d2j0sa1 82 --------------------------QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 135 (222)
T ss_dssp --------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHC
T ss_pred --------------------------cccCceeEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccC
Confidence 234568999999999999999999999999999999999999999998888889
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|+|+|||||.+++..+.. .+.+++++|+||||+|++.+|..++..|+..+ +..+|+++||||++..+.++
T Consensus 136 ~~Ilv~TPgrl~~~~~~~~~---~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~l-----~~~~Q~ilfSAT~~~~v~~l 207 (222)
T d2j0sa1 136 QHVVAGTPGRVFDMIRRRSL---RTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL-----PPATQVVLISATLPHEILEM 207 (222)
T ss_dssp CSEEEECHHHHHHHHHTTSS---CCTTCCEEEEETHHHHTSTTTHHHHHHHHTTS-----CTTCEEEEEESCCCHHHHTT
T ss_pred CeEEeCCCCcHHhccccccc---ccccceeeeecchhHhhhcCcHHHHHHHHHhC-----CCCCEEEEEEEeCCHHHHHH
Confidence 99999999999999987664 45689999999999999999999999999887 47799999999999887765
Q ss_pred Hh
Q psy16310 1007 LN 1008 (1493)
Q Consensus 1007 ~~ 1008 (1493)
+.
T Consensus 208 ~~ 209 (222)
T d2j0sa1 208 TN 209 (222)
T ss_dssp GG
T ss_pred HH
Confidence 53
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.6e-36 Score=323.34 Aligned_cols=195 Identities=30% Similarity=0.559 Sum_probs=175.4
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
..+|++++|++.++++|.++||.+|||+|.++||. +..|+|++++||||||||++|++|+++++..
T Consensus 16 ~~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~-il~g~dvi~~a~TGSGKTlayllPil~~l~~------------- 81 (222)
T d2j0sa1 16 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQ-IIKGRDVIAQSQSGTGKTATFSISVLQCLDI------------- 81 (222)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHHHHHHHHTCCT-------------
T ss_pred CCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHCCCCeEEEcCcchhhhhhhcccccccccc-------------
Confidence 45799999999999999999999999999999995 5578999999999999999999999987742
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKC 309 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~ 309 (1493)
....++++|++||||||.|+++.+..++.+.++++..++|+.....+...+..+
T Consensus 82 --------------------------~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~ 135 (222)
T d2j0sa1 82 --------------------------QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 135 (222)
T ss_dssp --------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHC
T ss_pred --------------------------cccCceeEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccC
Confidence 134567999999999999999999999999999999999999999998888889
Q ss_pred CCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhh
Q psy16310 310 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNIL 389 (1493)
Q Consensus 310 ~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1493)
++|+|+|||+|.+++...... +.++++||+||||+|++.+|.+++..|++.+
T Consensus 136 ~~Ilv~TPgrl~~~~~~~~~~---~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~l------------------------- 187 (222)
T d2j0sa1 136 QHVVAGTPGRVFDMIRRRSLR---TRAIKMLVLDEADEMLNKGFKEQIYDVYRYL------------------------- 187 (222)
T ss_dssp CSEEEECHHHHHHHHHTTSSC---CTTCCEEEEETHHHHTSTTTHHHHHHHHTTS-------------------------
T ss_pred CeEEeCCCCcHHhcccccccc---cccceeeeecchhHhhhcCcHHHHHHHHHhC-------------------------
Confidence 999999999999999877654 4589999999999999999999999999876
Q ss_pred hhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 390 DRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 390 ~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
+..+|+++||||+|+.+.++.+.
T Consensus 188 --------~~~~Q~ilfSAT~~~~v~~l~~~ 210 (222)
T d2j0sa1 188 --------PPATQVVLISATLPHEILEMTNK 210 (222)
T ss_dssp --------CTTCEEEEEESCCCHHHHTTGGG
T ss_pred --------CCCCEEEEEEEeCCHHHHHHHHH
Confidence 34579999999999988776643
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.8e-35 Score=313.53 Aligned_cols=194 Identities=27% Similarity=0.534 Sum_probs=173.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
.+|++++|++.++++|.++||++|||+|.+|||. +..|+|++++||||||||+||++|+++++..
T Consensus 3 ~~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~-il~g~dvl~~a~TGsGKTlayllP~l~~~~~-------------- 67 (206)
T d1veca_ 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPI-ALSGRDILARAKNGTGKSGAYLIPLLERLDL-------------- 67 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHH-HHTTCCEEEECCSSSTTHHHHHHHHHHHCCT--------------
T ss_pred CChhccCcCHHHHHHHHHCCCCCCCHHHHHHHHH-HHcCCCEEeeccCccccccccccchhhcccc--------------
Confidence 5799999999999999999999999999999995 4588999999999999999999999987632
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC-CcEEEEEEcCCCHHHHHHHhcCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNKC 926 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~~ 926 (1493)
...+++++|++||++||.|+++.+..+.+.. ++.+....|+.....+...+..+
T Consensus 68 -------------------------~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 122 (206)
T d1veca_ 68 -------------------------KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 122 (206)
T ss_dssp -------------------------TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSC
T ss_pred -------------------------cccCcceEEEeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhc
Confidence 2455789999999999999999999887654 57788888999999998889999
Q ss_pred CcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhH
Q psy16310 927 PHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNS 1006 (1493)
Q Consensus 927 ~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~ 1006 (1493)
++|+|+|||+|.+++..+.. .+.++++||+||||.|++.+|..++..|+..+ +.++|+++||||++..+..+
T Consensus 123 ~~ivv~TPgrl~~~~~~~~~---~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~~-----~~~~Q~~l~SAT~~~~v~~l 194 (206)
T d1veca_ 123 VHVVIATPGRILDLIKKGVA---KVDHVQMIVLDEADKLLSQDFVQIMEDIILTL-----PKNRQILLYSATFPLSVQKF 194 (206)
T ss_dssp CSEEEECHHHHHHHHHTTCS---CCTTCCEEEEETHHHHTSTTTHHHHHHHHHHS-----CTTCEEEEEESCCCHHHHHH
T ss_pred cCeEEeCCccccccccchhc---cccccceEEEeccccccccchHHHHHHHHHhC-----CCCCEEEEEEecCCHHHHHH
Confidence 99999999999999987764 35689999999999999999999999999988 46799999999999888776
Q ss_pred Hhh
Q psy16310 1007 LNL 1009 (1493)
Q Consensus 1007 ~~~ 1009 (1493)
+..
T Consensus 195 ~~~ 197 (206)
T d1veca_ 195 MNS 197 (206)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-34 Score=307.72 Aligned_cols=195 Identities=27% Similarity=0.526 Sum_probs=172.2
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCc
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 229 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 229 (1493)
..+|++++|++.++++|.++||++|||+|+++|| .+..|+|++++||||||||++|++|+++++..
T Consensus 2 ~~~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip-~il~g~dvl~~a~TGsGKTlayllP~l~~~~~------------- 67 (206)
T d1veca_ 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP-IALSGRDILARAKNGTGKSGAYLIPLLERLDL------------- 67 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHH-HHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT-------------
T ss_pred CCChhccCcCHHHHHHHHHCCCCCCCHHHHHHHH-HHHcCCCEEeeccCccccccccccchhhcccc-------------
Confidence 3579999999999999999999999999999999 55588999999999999999999999987632
Q ss_pred cchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC-CeEEEEEEcCCCHHHHHHHhcC
Q psy16310 230 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT-PVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~-~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
..++++++|++||++||.|+++.+..+.... ++.+....|+.....+...+..
T Consensus 68 --------------------------~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 121 (206)
T d1veca_ 68 --------------------------KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDD 121 (206)
T ss_dssp --------------------------TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTS
T ss_pred --------------------------cccCcceEEEeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHh
Confidence 2355789999999999999999999887654 4778888899999888888899
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
+++|+|+|||+|.+++..+... ++++++||+||||.|++.+|.+++..|++.+
T Consensus 122 ~~~ivv~TPgrl~~~~~~~~~~---~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~~------------------------ 174 (206)
T d1veca_ 122 TVHVVIATPGRILDLIKKGVAK---VDHVQMIVLDEADKLLSQDFVQIMEDIILTL------------------------ 174 (206)
T ss_dssp CCSEEEECHHHHHHHHHTTCSC---CTTCCEEEEETHHHHTSTTTHHHHHHHHHHS------------------------
T ss_pred ccCeEEeCCccccccccchhcc---ccccceEEEeccccccccchHHHHHHHHHhC------------------------
Confidence 9999999999999999877654 4589999999999999999999999999887
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
+..+|+++||||+|+.+.++.+.
T Consensus 175 ---------~~~~Q~~l~SAT~~~~v~~l~~~ 197 (206)
T d1veca_ 175 ---------PKNRQILLYSATFPLSVQKFMNS 197 (206)
T ss_dssp ---------CTTCEEEEEESCCCHHHHHHHHH
T ss_pred ---------CCCCEEEEEEecCCHHHHHHHHH
Confidence 34579999999999988877653
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.2e-34 Score=307.49 Aligned_cols=193 Identities=30% Similarity=0.558 Sum_probs=168.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
+.|++|+|++.++++|.++||++|||+|.++||. +..|+|++++||||||||+||++|+++++..
T Consensus 1 s~F~dl~L~~~l~~~l~~~g~~~pt~iQ~~aip~-il~g~dvl~~A~TGsGKTla~~lp~l~~~~~-------------- 65 (207)
T d1t6na_ 1 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQ-AILGMDVLCQAKSGMGKTAVFVLATLQQLEP-------------- 65 (207)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHHHCCC--------------
T ss_pred CCccccCcCHHHHHHHHHCCCCCCCHHHHHHHHH-HHcCCCeEEEeccccccccccccceeeeecc--------------
Confidence 3699999999999999999999999999999995 5578999999999999999999999987632
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCC-cEEEEEEcCCCHHHHHHHh-cC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRIL-NK 925 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~-~~v~~~~gg~~~~~~~~~l-~~ 925 (1493)
...+++++|++||||||.|+++.++.++.+.+ +++.+++||.....+...+ ..
T Consensus 66 -------------------------~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 120 (207)
T d1t6na_ 66 -------------------------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 120 (207)
T ss_dssp -------------------------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHS
T ss_pred -------------------------cCCCceEEEEeccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhc
Confidence 23456899999999999999999999988764 6788889999988777665 46
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccC-CChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~-~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
+++|+|+|||+|.+++..+.. .+.+++++|+||||+|++. +|...+..|++.+ +..+|+++||||+++.+.
T Consensus 121 ~~~ilI~TP~rl~~~~~~~~~---~l~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~~-----~~~~Q~il~SAT~~~~v~ 192 (207)
T d1t6na_ 121 CPHIVVGTPGRILALARNKSL---NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMT-----PHEKQVMMFSATLSKEIR 192 (207)
T ss_dssp CCSEEEECHHHHHHHHHTTSS---CCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTS-----CSSSEEEEEESCCCTTTH
T ss_pred CCCEEEeCcchhhhhccCCce---eccccceeehhhhhhhhhcCCcHHHHHHHHHhC-----CCCCEEEEEeeeCCHHHH
Confidence 789999999999999987654 4678999999999999985 8888899998877 467999999999998887
Q ss_pred hHHh
Q psy16310 1005 NSLN 1008 (1493)
Q Consensus 1005 ~~~~ 1008 (1493)
....
T Consensus 193 ~l~~ 196 (207)
T d1t6na_ 193 PVCR 196 (207)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.4e-34 Score=309.08 Aligned_cols=195 Identities=29% Similarity=0.537 Sum_probs=169.0
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCC
Q psy16310 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 845 (1493)
Q Consensus 766 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 845 (1493)
.+.+|++++|++.++++|.++||.+|||+|.+|||. +..|+|++++||||||||++|++|+++++..
T Consensus 10 ~i~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~-il~g~dvl~~a~TGsGKTlayllp~l~~i~~------------ 76 (218)
T d2g9na1 10 IVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILP-CIKGYDVIAQAQSGTGKTATFAISILQQIEL------------ 76 (218)
T ss_dssp CCCCGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHH-HHHTCCEEEECCTTSSHHHHHHHHHHHHCCT------------
T ss_pred ccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHcCCCEEEEcccchhhhhhhhhhhhheecc------------
Confidence 467899999999999999999999999999999995 4578999999999999999999999998732
Q ss_pred cchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH-Hhc
Q psy16310 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR-ILN 924 (1493)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~-~l~ 924 (1493)
...++++||++||+|||.|+++.+..+....++.+..+.++.....+.. ...
T Consensus 77 ---------------------------~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (218)
T d2g9na1 77 ---------------------------DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 129 (218)
T ss_dssp ---------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSS
T ss_pred ---------------------------cccCccEEEEcccchhhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhc
Confidence 2356789999999999999999999999999999988888765554433 333
Q ss_pred CCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 925 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 925 ~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
..++|+|+||++|.+++..+.. .+.+++++|+||||+|++.+|...+..|+..+ +.++|+++||||++..+.
T Consensus 130 ~~~~IvV~TP~rl~~~l~~~~~---~~~~l~~lVlDEaD~ll~~~f~~~~~~Il~~~-----~~~~Q~il~SAT~~~~v~ 201 (218)
T d2g9na1 130 EAPHIIVGTPGRVFDMLNRRYL---SPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL-----NSNTQVVLLSATMPSDVL 201 (218)
T ss_dssp CCCSEEEECHHHHHHHHHTTSS---CSTTCCEEEEESHHHHHHTTCHHHHHHHHHHS-----CTTCEEEEEESCCCHHHH
T ss_pred CCCEEEEeCChhHHHHHhcCCc---ccccceEEEeeecchhhcCchHHHHHHHHHhC-----CCCCeEEEEEecCCHHHH
Confidence 5789999999999999987664 45688999999999999999999999999988 467999999999998877
Q ss_pred hHHh
Q psy16310 1005 NSLN 1008 (1493)
Q Consensus 1005 ~~~~ 1008 (1493)
....
T Consensus 202 ~~~~ 205 (218)
T d2g9na1 202 EVTK 205 (218)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=100.00 E-value=9.3e-34 Score=312.55 Aligned_cols=211 Identities=35% Similarity=0.533 Sum_probs=180.5
Q ss_pred hhhccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCccc
Q psy16310 764 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 843 (1493)
Q Consensus 764 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~ 843 (1493)
...+.+|++++|++.++++|.++||.+|||+|..+||. +..|+|++++||||||||+||++|++++++.......
T Consensus 17 ~~~~~~F~~l~l~~~l~~~L~~~g~~~pt~iQ~~~ip~-il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~---- 91 (238)
T d1wrba1 17 TNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPA-ILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQ---- 91 (238)
T ss_dssp CSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC-------
T ss_pred CCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHhhh-hhCCCCEEEECCCCCCcceeeHHHHHHHHHhcccccc----
Confidence 34567899999999999999999999999999999995 5578999999999999999999999999875421110
Q ss_pred CCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHh
Q psy16310 844 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 923 (1493)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l 923 (1493)
......++++|||+||+|||.|+++.+..++...++++..++|+.....+.+..
T Consensus 92 --------------------------~~~~~~~~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 145 (238)
T d1wrba1 92 --------------------------RYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV 145 (238)
T ss_dssp -----------------------------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH
T ss_pred --------------------------cccCCCCceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhc
Confidence 012345678999999999999999999999999999999999999888888888
Q ss_pred cCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 924 ~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..++||+|+||++|.+++..+.. .+.+++++|+||||+|++.+|..++..|++.+... .+.++|+++||||++..+
T Consensus 146 ~~~~~ivV~TP~~l~~~~~~~~~---~l~~v~~lViDEaD~ll~~~f~~~i~~Il~~~~~~-~~~~~Q~il~SAT~~~~v 221 (238)
T d1wrba1 146 QMGCHLLVATPGRLVDFIEKNKI---SLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMP-SGINRQTLMFSATFPKEI 221 (238)
T ss_dssp SSCCSEEEECHHHHHHHHHTTSB---CCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCC-CGGGCEEEEEESSCCHHH
T ss_pred ccCCceeecCHHHHHhHHccCce---eccccceeeeehhhhhhhhccHHHHHHHHHHhcCC-CCCCCEEEEEeeeCCHHH
Confidence 88999999999999999987654 36689999999999999999999999999876432 234679999999999888
Q ss_pred HhHHhh
Q psy16310 1004 KNSLNL 1009 (1493)
Q Consensus 1004 ~~~~~~ 1009 (1493)
......
T Consensus 222 ~~l~~~ 227 (238)
T d1wrba1 222 QKLAAD 227 (238)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-33 Score=301.92 Aligned_cols=193 Identities=30% Similarity=0.558 Sum_probs=167.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
+.|++++|++.++++|.++||++|||+|+++|| ++.+|+|++++||||||||++|++|+++++..
T Consensus 1 s~F~dl~L~~~l~~~l~~~g~~~pt~iQ~~aip-~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~-------------- 65 (207)
T d1t6na_ 1 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIP-QAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-------------- 65 (207)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHH-HHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC--------------
T ss_pred CCccccCcCHHHHHHHHHCCCCCCCHHHHHHHH-HHHcCCCeEEEeccccccccccccceeeeecc--------------
Confidence 369999999999999999999999999999999 55688999999999999999999999987532
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCC-eEEEEEEcCCCHHHHHHHh-cC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTP-VKVACVVGGMSTEKQLRIL-NK 308 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~-i~v~~~~G~~~~~~~~~~l-~~ 308 (1493)
...+++++|++|||+||.|+.+.+..++.+.+ +++.+++|+.....+...+ ..
T Consensus 66 -------------------------~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 120 (207)
T d1t6na_ 66 -------------------------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 120 (207)
T ss_dssp -------------------------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHS
T ss_pred -------------------------cCCCceEEEEeccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhc
Confidence 23457899999999999999999999988764 6788889999888777666 45
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhc-CChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIES-GHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~-~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
+++|+||||++|.+++..+... +.++.++|+||||+|++. +|.+.+..|++.+
T Consensus 121 ~~~ilI~TP~rl~~~~~~~~~~---l~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~~----------------------- 174 (207)
T d1t6na_ 121 CPHIVVGTPGRILALARNKSLN---LKHIKHFILDECDKMLEQLDMRRDVQEIFRMT----------------------- 174 (207)
T ss_dssp CCSEEEECHHHHHHHHHTTSSC---CTTCCEEEEESHHHHHSSHHHHHHHHHHHHTS-----------------------
T ss_pred CCCEEEeCcchhhhhccCCcee---ccccceeehhhhhhhhhcCCcHHHHHHHHHhC-----------------------
Confidence 7899999999999999876553 568999999999999974 7888888888765
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 419 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~ 419 (1493)
+..+|+++||||+++.+.++.+
T Consensus 175 ----------~~~~Q~il~SAT~~~~v~~l~~ 196 (207)
T d1t6na_ 175 ----------PHEKQVMMFSATLSKEIRPVCR 196 (207)
T ss_dssp ----------CSSSEEEEEESCCCTTTHHHHH
T ss_pred ----------CCCCEEEEEeeeCCHHHHHHHH
Confidence 4457999999999988877664
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.9e-33 Score=302.75 Aligned_cols=195 Identities=29% Similarity=0.482 Sum_probs=166.0
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCC
Q psy16310 766 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 845 (1493)
Q Consensus 766 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 845 (1493)
.+.+|++|+|++.++++|.++||++|||+|..+||. +..|+|++++||||||||++|++|+++++..
T Consensus 8 ~~~sF~~l~l~~~l~~~L~~~g~~~pt~iQ~~aip~-il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~------------ 74 (212)
T d1qdea_ 8 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMP-IIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------------ 74 (212)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------------
T ss_pred cccChhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHcCCCEEeecccccchhhhhHhhhHhhhhc------------
Confidence 367899999999999999999999999999999995 5578999999999999999999999998732
Q ss_pred cchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcC
Q psy16310 846 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 925 (1493)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~ 925 (1493)
...+++++|++||++|+.|++..+..+.....+.+..+.|+.....+...++
T Consensus 75 ---------------------------~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 126 (212)
T d1qdea_ 75 ---------------------------SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR- 126 (212)
T ss_dssp ---------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-
T ss_pred ---------------------------cCCCcceEEEcccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHhc-
Confidence 2456789999999999999999999999888999999998887777766554
Q ss_pred CCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHh
Q psy16310 926 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKN 1005 (1493)
Q Consensus 926 ~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~ 1005 (1493)
+++|+|+||+++.+++..+.. .+.+++++|+||||+|++.+|...+..|++.+ +..+|+++||||+++.+.+
T Consensus 127 ~~~IvI~TP~~l~~~~~~~~~---~l~~l~~lVlDEad~lld~~f~~~v~~I~~~~-----~~~~Q~vl~SAT~~~~v~~ 198 (212)
T d1qdea_ 127 DAQIVVGTPGRVFDNIQRRRF---RTDKIKMFILDEADEMLSSGFKEQIYQIFTLL-----PPTTQVVLLSATMPNDVLE 198 (212)
T ss_dssp TCSEEEECHHHHHHHHHTTSS---CCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS-----CTTCEEEEEESSCCHHHHH
T ss_pred CCcEEEECCCccccccccCce---ecCcceEEeehhhhhhcccchHHHHHHHHHhC-----CCCCeEEEEEeeCCHHHHH
Confidence 689999999999999988765 46689999999999999999999999999987 4679999999999988777
Q ss_pred HHhh
Q psy16310 1006 SLNL 1009 (1493)
Q Consensus 1006 ~~~~ 1009 (1493)
....
T Consensus 199 l~~~ 202 (212)
T d1qdea_ 199 VTTK 202 (212)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=100.00 E-value=2.6e-33 Score=308.92 Aligned_cols=211 Identities=36% Similarity=0.535 Sum_probs=180.4
Q ss_pred ccccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccC
Q psy16310 147 FVQMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDE 226 (1493)
Q Consensus 147 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~ 226 (1493)
...+.+|++++|++.++++|.++||.+|||+|.++|| ++..|+|++++||||||||++|++|+++++........
T Consensus 17 ~~~~~~F~~l~l~~~l~~~L~~~g~~~pt~iQ~~~ip-~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~---- 91 (238)
T d1wrba1 17 TNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIP-AILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQ---- 91 (238)
T ss_dssp CSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC-------
T ss_pred CCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHhh-hhhCCCCEEEECCCCCCcceeeHHHHHHHHHhcccccc----
Confidence 3456789999999999999999999999999999999 55688999999999999999999999999975321110
Q ss_pred CCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHh
Q psy16310 227 NDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRIL 306 (1493)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l 306 (1493)
......++++|||+||++||.|+++.+..++...++++..++|+.....+....
T Consensus 92 --------------------------~~~~~~~~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 145 (238)
T d1wrba1 92 --------------------------RYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV 145 (238)
T ss_dssp -----------------------------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH
T ss_pred --------------------------cccCCCCceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhc
Confidence 112345678999999999999999999999999999999999999988888888
Q ss_pred cCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
..++||+||||++|.+++..+... |.++.++|+||||+|++.+|.+++..|++.+...
T Consensus 146 ~~~~~ivV~TP~~l~~~~~~~~~~---l~~v~~lViDEaD~ll~~~f~~~i~~Il~~~~~~------------------- 203 (238)
T d1wrba1 146 QMGCHLLVATPGRLVDFIEKNKIS---LEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMP------------------- 203 (238)
T ss_dssp SSCCSEEEECHHHHHHHHHTTSBC---CTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCC-------------------
T ss_pred ccCCceeecCHHHHHhHHccCcee---ccccceeeeehhhhhhhhccHHHHHHHHHHhcCC-------------------
Confidence 899999999999999999876553 5589999999999999999999999999876422
Q ss_pred hhhhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 387 ~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
.+..+|+++||||+|..+..+.+.
T Consensus 204 ----------~~~~~Q~il~SAT~~~~v~~l~~~ 227 (238)
T d1wrba1 204 ----------SGINRQTLMFSATFPKEIQKLAAD 227 (238)
T ss_dssp ----------CGGGCEEEEEESSCCHHHHHHHHH
T ss_pred ----------CCCCCEEEEEeeeCCHHHHHHHHH
Confidence 133579999999999988777653
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=8.5e-33 Score=299.32 Aligned_cols=192 Identities=35% Similarity=0.603 Sum_probs=171.5
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
.+|++++|++.++++|.++||.+|||+|.++||.++.++.|++++||||||||++|++|+++...
T Consensus 4 msf~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~--------------- 68 (208)
T d1hv8a1 4 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVN--------------- 68 (208)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSC---------------
T ss_pred cCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeecccccccc---------------
Confidence 47999999999999999999999999999999977766579999999999999999999987642
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 927 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~ 927 (1493)
...++++||++||++||.|+++.+..+....+.++...+|+.....+...+. ++
T Consensus 69 -------------------------~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~-~~ 122 (208)
T d1hv8a1 69 -------------------------ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NA 122 (208)
T ss_dssp -------------------------SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TC
T ss_pred -------------------------cccCcceEEEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcC-CC
Confidence 2456789999999999999999999999999999999999999888877664 68
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHH
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSL 1007 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~ 1007 (1493)
+|+||||++|.+++.++.. .+.++++||+||||+|++.++...+..|+..+ +.++|+++||||+|+.+.+.+
T Consensus 123 ~IlV~TP~~l~~~l~~~~~---~~~~l~~lViDEad~l~~~~~~~~i~~I~~~~-----~~~~Q~i~~SAT~~~~v~~~~ 194 (208)
T d1hv8a1 123 NIVVGTPGRILDHINRGTL---NLKNVKYFILDEADEMLNMGFIKDVEKILNAC-----NKDKRILLFSATMPREILNLA 194 (208)
T ss_dssp SEEEECHHHHHHHHHTTCS---CTTSCCEEEEETHHHHHTTTTHHHHHHHHHTS-----CSSCEEEEECSSCCHHHHHHH
T ss_pred CEEEEChHHHHHHHHcCCC---CcccCcEEEEEChHHhhcCCChHHHHHHHHhC-----CCCCeEEEEEccCCHHHHHHH
Confidence 9999999999999987764 36689999999999999999999999999887 467899999999998777655
Q ss_pred h
Q psy16310 1008 N 1008 (1493)
Q Consensus 1008 ~ 1008 (1493)
.
T Consensus 195 ~ 195 (208)
T d1hv8a1 195 K 195 (208)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-33 Score=303.86 Aligned_cols=196 Identities=29% Similarity=0.521 Sum_probs=168.3
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 149 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
.+.+|++++|++.++++|.++||.+|||+|+++|| .+..|+|++++||||||||++|++|+++++..
T Consensus 10 ~i~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip-~il~g~dvl~~a~TGsGKTlayllp~l~~i~~------------ 76 (218)
T d2g9na1 10 IVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAIL-PCIKGYDVIAQAQSGTGKTATFAISILQQIEL------------ 76 (218)
T ss_dssp CCCCGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHH-HHHHTCCEEEECCTTSSHHHHHHHHHHHHCCT------------
T ss_pred ccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHHcCCCEEEEcccchhhhhhhhhhhhheecc------------
Confidence 46789999999999999999999999999999999 55588999999999999999999999988732
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH-hc
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI-LN 307 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~-l~ 307 (1493)
...++++||++||++||.|+++.+..+....++.+..+.|+.....+... ..
T Consensus 77 ---------------------------~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (218)
T d2g9na1 77 ---------------------------DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 129 (218)
T ss_dssp ---------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSS
T ss_pred ---------------------------cccCccEEEEcccchhhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhc
Confidence 13467899999999999999999999999999999888887655444333 33
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKN 387 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 387 (1493)
.+++|+|+||++|.+++..+... ++++++||+||||+|++.+|.+++..|++.+
T Consensus 130 ~~~~IvV~TP~rl~~~l~~~~~~---~~~l~~lVlDEaD~ll~~~f~~~~~~Il~~~----------------------- 183 (218)
T d2g9na1 130 EAPHIIVGTPGRVFDMLNRRYLS---PKYIKMFVLDEADEMLSRGFKDQIYDIFQKL----------------------- 183 (218)
T ss_dssp CCCSEEEECHHHHHHHHHTTSSC---STTCCEEEEESHHHHHHTTCHHHHHHHHHHS-----------------------
T ss_pred CCCEEEEeCChhHHHHHhcCCcc---cccceEEEeeecchhhcCchHHHHHHHHHhC-----------------------
Confidence 56899999999999999876654 4589999999999999999999999999877
Q ss_pred hhhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 388 ILDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 388 ~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
+..+|+++||||++..+.++.+.
T Consensus 184 ----------~~~~Q~il~SAT~~~~v~~~~~~ 206 (218)
T d2g9na1 184 ----------NSNTQVVLLSATMPSDVLEVTKK 206 (218)
T ss_dssp ----------CTTCEEEEEESCCCHHHHHHHHH
T ss_pred ----------CCCCeEEEEEecCCHHHHHHHHH
Confidence 34579999999999988776643
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-32 Score=297.47 Aligned_cols=195 Identities=29% Similarity=0.486 Sum_probs=164.9
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCC
Q psy16310 149 QMAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEND 228 (1493)
Q Consensus 149 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~ 228 (1493)
.+.+|++++|++.++++|.++||++|||+|.++|| .+..|+|++++||||||||++|++|+++++..
T Consensus 8 ~~~sF~~l~l~~~l~~~L~~~g~~~pt~iQ~~aip-~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~------------ 74 (212)
T d1qdea_ 8 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIM-PIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------------ 74 (212)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------------
T ss_pred cccChhhCCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHHcCCCEEeecccccchhhhhHhhhHhhhhc------------
Confidence 46789999999999999999999999999999999 56688999999999999999999999988732
Q ss_pred ccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcC
Q psy16310 229 SGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNK 308 (1493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~ 308 (1493)
..++++++|++||++||.|++..+..+.....+.+....|+.....+...+ +
T Consensus 75 ---------------------------~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 126 (212)
T d1qdea_ 75 ---------------------------SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-R 126 (212)
T ss_dssp ---------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C-T
T ss_pred ---------------------------cCCCcceEEEcccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHh-c
Confidence 235678999999999999999999999988889999998887777666554 4
Q ss_pred CCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhh
Q psy16310 309 CPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNI 388 (1493)
Q Consensus 309 ~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1493)
+++|+|+||++|.+++..+... +.+++++|+||||.|++++|.+++..|++.+
T Consensus 127 ~~~IvI~TP~~l~~~~~~~~~~---l~~l~~lVlDEad~lld~~f~~~v~~I~~~~------------------------ 179 (212)
T d1qdea_ 127 DAQIVVGTPGRVFDNIQRRRFR---TDKIKMFILDEADEMLSSGFKEQIYQIFTLL------------------------ 179 (212)
T ss_dssp TCSEEEECHHHHHHHHHTTSSC---CTTCCEEEEETHHHHHHTTCHHHHHHHHHHS------------------------
T ss_pred CCcEEEECCCccccccccCcee---cCcceEEeehhhhhhcccchHHHHHHHHHhC------------------------
Confidence 6799999999999999887664 5589999999999999999999999999876
Q ss_pred hhhccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 389 LDRVTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 389 ~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
+..+|+++||||+|+.+.++.+.
T Consensus 180 ---------~~~~Q~vl~SAT~~~~v~~l~~~ 202 (212)
T d1qdea_ 180 ---------PPTTQVVLLSATMPNDVLEVTTK 202 (212)
T ss_dssp ---------CTTCEEEEEESSCCHHHHHHHHH
T ss_pred ---------CCCCeEEEEEeeCCHHHHHHHHH
Confidence 34579999999999988776653
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.98 E-value=4e-32 Score=293.96 Aligned_cols=192 Identities=35% Similarity=0.608 Sum_probs=169.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
.+|++++|++.++++|.++||.+|||+|.++||.++.++.|++++||||||||++|++|++++..
T Consensus 4 msf~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~--------------- 68 (208)
T d1hv8a1 4 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVN--------------- 68 (208)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSC---------------
T ss_pred cCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeecccccccc---------------
Confidence 47999999999999999999999999999999966655569999999999999999999987542
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCC
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCP 310 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~ 310 (1493)
..+++++||++||++||.|+++.+..+....+.++...+|+.....+...+ +++
T Consensus 69 -------------------------~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l-~~~ 122 (208)
T d1hv8a1 69 -------------------------ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KNA 122 (208)
T ss_dssp -------------------------SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH-HTC
T ss_pred -------------------------cccCcceEEEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhc-CCC
Confidence 135678999999999999999999999999999999999999888877665 468
Q ss_pred CEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhh
Q psy16310 311 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILD 390 (1493)
Q Consensus 311 ~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1493)
+|+||||++|.+++.++... ++++++|||||||+|++.++.+++..|++.+
T Consensus 123 ~IlV~TP~~l~~~l~~~~~~---~~~l~~lViDEad~l~~~~~~~~i~~I~~~~-------------------------- 173 (208)
T d1hv8a1 123 NIVVGTPGRILDHINRGTLN---LKNVKYFILDEADEMLNMGFIKDVEKILNAC-------------------------- 173 (208)
T ss_dssp SEEEECHHHHHHHHHTTCSC---TTSCCEEEEETHHHHHTTTTHHHHHHHHHTS--------------------------
T ss_pred CEEEEChHHHHHHHHcCCCC---cccCcEEEEEChHHhhcCCChHHHHHHHHhC--------------------------
Confidence 99999999999999877654 5589999999999999999999999999766
Q ss_pred hccccCCCCCceEEEEeeccchhhhhhhh
Q psy16310 391 RVTMTETSQPRQTFVFSATLTHSLKNSLN 419 (1493)
Q Consensus 391 ~~~~~~~~~~~q~il~SATl~~~~~~~~~ 419 (1493)
+..+|+++||||+|+.+.++++
T Consensus 174 -------~~~~Q~i~~SAT~~~~v~~~~~ 195 (208)
T d1hv8a1 174 -------NKDKRILLFSATMPREILNLAK 195 (208)
T ss_dssp -------CSSCEEEEECSSCCHHHHHHHH
T ss_pred -------CCCCeEEEEEccCCHHHHHHHH
Confidence 3457999999999988776653
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=5e-32 Score=293.24 Aligned_cols=192 Identities=30% Similarity=0.525 Sum_probs=174.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcch
Q psy16310 769 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 848 (1493)
Q Consensus 769 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 848 (1493)
+|++|+|++.++++|+++||.+|||+|.++||. +..|+|++++||||||||++|++|+++.+..
T Consensus 2 sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~-il~g~dvi~~a~tGsGKTlay~lp~i~~~~~--------------- 65 (206)
T d1s2ma1 2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPV-AITGRDILARAKNGTGKTAAFVIPTLEKVKP--------------- 65 (206)
T ss_dssp CGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHH-HHHTCCEEEECCTTSCHHHHHHHHHHHHCCT---------------
T ss_pred ChHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHcCCCEEEecCCcchhhhhhcccccccccc---------------
Confidence 699999999999999999999999999999995 5578999999999999999999999987643
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCc
Q psy16310 849 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 928 (1493)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~ 928 (1493)
...+.++++++|+++++.|....+..+....++++..++|+.....+...+..+++
T Consensus 66 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 121 (206)
T d1s2ma1 66 ------------------------KLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVH 121 (206)
T ss_dssp ------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCS
T ss_pred ------------------------ccccccceeeccchhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcccce
Confidence 23456799999999999999999999999999999999999999999999999999
Q ss_pred EEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHh
Q psy16310 929 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 1008 (1493)
Q Consensus 929 IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~ 1008 (1493)
|+|+||++|++++..+.. .+.+++++|+||||+|++.+|...+..|++.+ +..+|+++||||+|+.+..++.
T Consensus 122 Ili~TP~~l~~~l~~~~~---~l~~l~~lV~DEaD~l~~~~f~~~v~~I~~~l-----~~~~Q~il~SATl~~~v~~~~~ 193 (206)
T d1s2ma1 122 ILVGTPGRVLDLASRKVA---DLSDCSLFIMDEADKMLSRDFKTIIEQILSFL-----PPTHQSLLFSATFPLTVKEFMV 193 (206)
T ss_dssp EEEECHHHHHHHHHTTCS---CCTTCCEEEEESHHHHSSHHHHHHHHHHHTTS-----CSSCEEEEEESCCCHHHHHHHH
T ss_pred EEEECCccccccccccee---ecccceEEEeechhhhhhhhhHHHHHHHHHhC-----CCCCEEEEEEEeCCHHHHHHHH
Confidence 999999999999987664 46689999999999999999999999999988 4678999999999988777654
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.6e-31 Score=289.13 Aligned_cols=193 Identities=30% Similarity=0.516 Sum_probs=174.1
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccc
Q psy16310 152 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 231 (1493)
+|++|+|++.++++|.++||.+|||+|.++|| ++..|+|++++||||||||++|++|+++++..
T Consensus 2 sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip-~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~--------------- 65 (206)
T d1s2ma1 2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIP-VAITGRDILARAKNGTGKTAAFVIPTLEKVKP--------------- 65 (206)
T ss_dssp CGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHH-HHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT---------------
T ss_pred ChHHcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHHcCCCEEEecCCcchhhhhhcccccccccc---------------
Confidence 69999999999999999999999999999999 56688999999999999999999999987643
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCC
Q psy16310 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPH 311 (1493)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~ 311 (1493)
...+.++++++|+++++.|....+..+....++++...+|+.....+...+..+++
T Consensus 66 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 121 (206)
T d1s2ma1 66 ------------------------KLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVH 121 (206)
T ss_dssp ------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCS
T ss_pred ------------------------ccccccceeeccchhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcccce
Confidence 13456799999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhh
Q psy16310 312 ILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDR 391 (1493)
Q Consensus 312 IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1493)
|+|+||++|.+++...... |.++++||+||||+|++.+|.+++..|++.+
T Consensus 122 Ili~TP~~l~~~l~~~~~~---l~~l~~lV~DEaD~l~~~~f~~~v~~I~~~l--------------------------- 171 (206)
T d1s2ma1 122 ILVGTPGRVLDLASRKVAD---LSDCSLFIMDEADKMLSRDFKTIIEQILSFL--------------------------- 171 (206)
T ss_dssp EEEECHHHHHHHHHTTCSC---CTTCCEEEEESHHHHSSHHHHHHHHHHHTTS---------------------------
T ss_pred EEEECCcccccccccceee---cccceEEEeechhhhhhhhhHHHHHHHHHhC---------------------------
Confidence 9999999999999876654 5589999999999999999999999999876
Q ss_pred ccccCCCCCceEEEEeeccchhhhhhhhh
Q psy16310 392 VTMTETSQPRQTFVFSATLTHSLKNSLNL 420 (1493)
Q Consensus 392 ~~~~~~~~~~q~il~SATl~~~~~~~~~~ 420 (1493)
+..+|+++||||+|+.+.++...
T Consensus 172 ------~~~~Q~il~SATl~~~v~~~~~~ 194 (206)
T d1s2ma1 172 ------PPTHQSLLFSATFPLTVKEFMVK 194 (206)
T ss_dssp ------CSSCEEEEEESCCCHHHHHHHHH
T ss_pred ------CCCCEEEEEEEeCCHHHHHHHHH
Confidence 34479999999999888876643
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.97 E-value=2.3e-31 Score=309.17 Aligned_cols=276 Identities=15% Similarity=0.127 Sum_probs=191.1
Q ss_pred hhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEE
Q psy16310 802 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 881 (1493)
Q Consensus 802 ~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 881 (1493)
++..++++++.||||||||++|+.|++..... ++.++||
T Consensus 5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~-----------------------------------------~~~~~lv 43 (305)
T d2bmfa2 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIK-----------------------------------------RGLRTLI 43 (305)
T ss_dssp SSSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------------------------------------HTCCEEE
T ss_pred HhhcCCcEEEEECCCCCHHHHHHHHHHHHHHh-----------------------------------------cCCEEEE
Confidence 45688999999999999999998888765532 2346999
Q ss_pred EcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecc
Q psy16310 882 LAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 961 (1493)
Q Consensus 882 l~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDE 961 (1493)
++||++||.|+++.++.++... ..... .........|+++||+.|..++... ..+.++++||+||
T Consensus 44 i~Ptr~La~q~~~~l~~~~~~~----~~~~~-------~~~~~~~~~i~~~t~~~l~~~~~~~----~~~~~~~~vViDE 108 (305)
T d2bmfa2 44 LAPTRVVAAEMEEALRGLPIRY----QTPAI-------RAEHTGREIVDLMCHATFTMRLLSP----IRVPNYNLIIMDE 108 (305)
T ss_dssp EESSHHHHHHHHHHTTTSCCBC----CC---------------CCCSEEEEEHHHHHHHHTSS----SCCCCCSEEEEES
T ss_pred EccHHHHHHHHHHHHhcCCcce----eeeEE-------eecccCccccccCCcHHHHHHHhcC----ccccceeEEEeee
Confidence 9999999999998887653221 11110 0112234589999999987766432 2356799999999
Q ss_pred cchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchHhHHhhhccCcCcccccCCCchhHHHHhHhccCCCcEE
Q psy16310 962 TDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQSKSKKVSKGDPSIKRLQDLLNIKSPKIV 1041 (1493)
Q Consensus 962 ah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 1041 (1493)
||++..+++ .+..++..+.. ....+++++|||++....... .......
T Consensus 109 ~H~~~~~~~--~~~~~l~~~~~---~~~~~~v~~SAT~~~~~~~~~---------------------------~~~~~~~ 156 (305)
T d2bmfa2 109 AHFTDPASI--AARGYISTRVE---MGEAAGIFMTATPPGSRDPFP---------------------------QSNAPIM 156 (305)
T ss_dssp TTCCSHHHH--HHHHHHHHHHH---HTSCEEEEECSSCTTCCCSSC---------------------------CCSSCEE
T ss_pred eeecchhhH--HHHHHHHHhhc---cccceEEEeecCCCcceeeec---------------------------ccCCcce
Confidence 999876543 22233333321 256799999999974321100 0000011
Q ss_pred eccccccccccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHH
Q psy16310 1042 DLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLD 1121 (1493)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~ 1121 (1493)
..... .....+. .....+...++++||||++++.++.++..|+..++.+..+||++.+..| .
T Consensus 157 ~~~~~-------------~~~~~~~-~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~----~ 218 (305)
T d2bmfa2 157 DEERE-------------IPERSWN-SGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEY----I 218 (305)
T ss_dssp EEECC-------------CCCSCCS-SCCHHHHSSCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHG----G
T ss_pred EEEEe-------------ccHHHHH-HHHHHHHhhCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHHH----h
Confidence 10000 0000000 1123345667899999999999999999999999999999999976554 4
Q ss_pred HHhcCCCCeEEeehhhhccccCCCccEEE----------Eec----------CCCChhHHHHHHhccCCCCCCCeEEEEe
Q psy16310 1122 RFRDQNNSILLATDVAARGLDIPGIEHVI----------HYH----------VPRTSEIYIHRSGRTARANNEGLTLVLI 1181 (1493)
Q Consensus 1122 ~F~~g~~~VLVaTdv~~~GiDip~v~~VI----------~~d----------~p~s~~~yiqr~GR~gR~g~~G~~i~l~ 1181 (1493)
.|++|...++|||+++++|+|+ ++++|| +|+ .|.|..+|+||+||+||.|+.|.+++++
T Consensus 219 ~~~~~~~~~lvaT~~~~~G~~~-~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~~~~~ 297 (305)
T d2bmfa2 219 KTRTNDWDFVVTTDISEMGANF-KAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIY 297 (305)
T ss_dssp GGGTSCCSEEEECGGGGTTCCC-CCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCEEEEE
T ss_pred hhhccchhhhhhhHHHHhcCCC-CccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCceEEEEE
Confidence 6899999999999999999999 455554 334 4568899999999999999988888776
Q ss_pred cCC
Q psy16310 1182 ESD 1184 (1493)
Q Consensus 1182 ~~~ 1184 (1493)
...
T Consensus 298 ~~~ 300 (305)
T d2bmfa2 298 MGE 300 (305)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.97 E-value=2.2e-30 Score=300.78 Aligned_cols=278 Identities=15% Similarity=0.140 Sum_probs=188.9
Q ss_pred hhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEE
Q psy16310 185 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 264 (1493)
Q Consensus 185 ~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLi 264 (1493)
++..++++|+.||||||||++|+++++..... ++.++||
T Consensus 5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~-----------------------------------------~~~~~lv 43 (305)
T d2bmfa2 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIK-----------------------------------------RGLRTLI 43 (305)
T ss_dssp SSSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------------------------------------HTCCEEE
T ss_pred HhhcCCcEEEEECCCCCHHHHHHHHHHHHHHh-----------------------------------------cCCEEEE
Confidence 45678999999999999999998888765532 2357999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEec
Q psy16310 265 LAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 344 (1493)
Q Consensus 265 L~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDE 344 (1493)
++||++||.|+++.+..+... +.....+ ........|+++||+.|...+.... .+.+++++||||
T Consensus 44 i~Ptr~La~q~~~~l~~~~~~----~~~~~~~-------~~~~~~~~i~~~t~~~l~~~~~~~~----~~~~~~~vViDE 108 (305)
T d2bmfa2 44 LAPTRVVAAEMEEALRGLPIR----YQTPAIR-------AEHTGREIVDLMCHATFTMRLLSPI----RVPNYNLIIMDE 108 (305)
T ss_dssp EESSHHHHHHHHHHTTTSCCB----CCC---------------CCCSEEEEEHHHHHHHHTSSS----CCCCCSEEEEES
T ss_pred EccHHHHHHHHHHHHhcCCcc----eeeeEEe-------ecccCccccccCCcHHHHHHHhcCc----cccceeEEEeee
Confidence 999999999999888665321 1111110 1122345899999999877665332 355899999999
Q ss_pred CchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCCCCCceEEEEeeccchhhhhhhhhhccc
Q psy16310 345 TDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLKNSLNLKKGQ 424 (1493)
Q Consensus 345 Ah~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~~~~~~ 424 (1493)
||++..+++. ...++..+.. ....+++++|||++........
T Consensus 109 ~H~~~~~~~~--~~~~l~~~~~-------------------------------~~~~~~v~~SAT~~~~~~~~~~----- 150 (305)
T d2bmfa2 109 AHFTDPASIA--ARGYISTRVE-------------------------------MGEAAGIFMTATPPGSRDPFPQ----- 150 (305)
T ss_dssp TTCCSHHHHH--HHHHHHHHHH-------------------------------HTSCEEEEECSSCTTCCCSSCC-----
T ss_pred eeecchhhHH--HHHHHHHhhc-------------------------------cccceEEEeecCCCcceeeecc-----
Confidence 9998654321 2222222211 2346899999999743211100
Q ss_pred cccccccCCCchhhhHHhhhhccCCcccchhhhhccccccchhhhhhccCCcchhhHHHHhcCCCcchhhHHHhhhhccC
Q psy16310 425 SKSKKVSKGDPSIKRLQDLLNIKSPKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLCEEIQDLLNIKS 504 (1493)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1493)
........ ...
T Consensus 151 ----------------------~~~~~~~~-----------------~~~------------------------------ 161 (305)
T d2bmfa2 151 ----------------------SNAPIMDE-----------------ERE------------------------------ 161 (305)
T ss_dssp ----------------------CSSCEEEE-----------------ECC------------------------------
T ss_pred ----------------------cCCcceEE-----------------EEe------------------------------
Confidence 00000000 000
Q ss_pred CccccccccccccccccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHH
Q psy16310 505 PKIVDLTEKIGITKTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRL 584 (1493)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~ 584 (1493)
... ..+ ......+...++++||||+++..++.++..|...++.+..+||++.+..+
T Consensus 162 -----------~~~-----------~~~-~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~- 217 (305)
T d2bmfa2 162 -----------IPE-----------RSW-NSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEY- 217 (305)
T ss_dssp -----------CCC-----------SCC-SSCCHHHHSSCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHG-
T ss_pred -----------ccH-----------HHH-HHHHHHHHhhCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHHH-
Confidence 000 000 00011234456799999999999999999999999999999999876544
Q ss_pred HHHHHHhcCCCeEEEEechhhccCCCCCCcEEE----------Eec----------CCCChHHHHHHHhccccCCCCCeE
Q psy16310 585 KNLDRFRDQNNSILLATDVAARGLDIPGIEHVI----------HYH----------VPRTSEIYIHRSGRTARANNEGLT 644 (1493)
Q Consensus 585 ~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI----------~yd----------~P~s~~~yiQR~GRagR~g~~G~~ 644 (1493)
..|++|...++|||+++++|+|++ +++|| +|| .|.|..+|+||+||+||.|..|..
T Consensus 218 ---~~~~~~~~~~lvaT~~~~~G~~~~-~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~ 293 (305)
T d2bmfa2 218 ---IKTRTNDWDFVVTTDISEMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNEND 293 (305)
T ss_dssp ---GGGGTSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCE
T ss_pred ---hhhhccchhhhhhhHHHHhcCCCC-ccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCceE
Confidence 468999999999999999999994 55554 344 456889999999999999999988
Q ss_pred EEEecCCcc
Q psy16310 645 VVLIESDEI 653 (1493)
Q Consensus 645 i~l~~~~e~ 653 (1493)
+++|.....
T Consensus 294 ~~~~~~~~~ 302 (305)
T d2bmfa2 294 QYIYMGEPL 302 (305)
T ss_dssp EEEECSCCC
T ss_pred EEEECCCCC
Confidence 888876543
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.96 E-value=4.7e-30 Score=279.36 Aligned_cols=193 Identities=36% Similarity=0.611 Sum_probs=165.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
++|++++|++.++++|++.||++|||+|.+|||. +..|+|++++||||||||+||++|+++.+...
T Consensus 1 t~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~-~l~G~dvii~a~TGSGKTlayllp~l~~~~~~------------- 66 (209)
T d1q0ua_ 1 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPG-ALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE------------- 66 (209)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHH-HHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-------------
T ss_pred CccccCCcCHHHHHHHHHCCCCCCCHHHHHHHHH-HHCCCCeEeecccccccceeeeeeeccccccc-------------
Confidence 3699999999999999999999999999999995 55789999999999999999999999876432
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCC----CcEEEEEEcCCCHHHHHHHh
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT----PVKVACVVGGMSTEKQLRIL 923 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~----~~~v~~~~gg~~~~~~~~~l 923 (1493)
.....+++++|+++++.|.+..+....... ...+.++.|+.....+....
T Consensus 67 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
T d1q0ua_ 67 --------------------------RAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL 120 (209)
T ss_dssp --------------------------SCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCC
T ss_pred --------------------------cccccccccccccchhHHHHHHHHhhhccccccccccccccccchhhHHHHHHh
Confidence 344568999999999999999888776554 35666777776666665666
Q ss_pred cCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 924 ~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
..+++|+|+||+++.+++.+... .+.+++++|+||||+|++++|..++..|+..+ +.++|+++||||+|+.+
T Consensus 121 ~~~~~Ilv~TP~~l~~~~~~~~~---~~~~l~~lViDEad~ll~~~f~~~v~~I~~~~-----~~~~Q~il~SATl~~~v 192 (209)
T d1q0ua_ 121 NVQPHIVIGTPGRINDFIREQAL---DVHTAHILVVDEADLMLDMGFITDVDQIAARM-----PKDLQMLVFSATIPEKL 192 (209)
T ss_dssp SSCCSEEEECHHHHHHHHHTTCC---CGGGCCEEEECSHHHHHHTTCHHHHHHHHHTS-----CTTCEEEEEESCCCGGG
T ss_pred ccCceEEEecCchhhhhhhhhcc---ccccceEEEEeecccccccccHHHHHHHHHHC-----CCCCEEEEEEccCCHHH
Confidence 77899999999999999887654 35689999999999999999999999999887 47799999999999888
Q ss_pred HhHHh
Q psy16310 1004 KNSLN 1008 (1493)
Q Consensus 1004 ~~~~~ 1008 (1493)
.+.+.
T Consensus 193 ~~l~~ 197 (209)
T d1q0ua_ 193 KPFLK 197 (209)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.96 E-value=1.6e-29 Score=275.13 Aligned_cols=193 Identities=36% Similarity=0.605 Sum_probs=164.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
++|++++|++.++++|.+.||++|||+|+++|| ++..|+|++++||||||||++|++|+++.+..
T Consensus 1 t~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip-~~l~G~dvii~a~TGSGKTlayllp~l~~~~~-------------- 65 (209)
T d1q0ua_ 1 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIP-GALRGESMVGQSQTGTGKTHAYLLPIMEKIKP-------------- 65 (209)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHH-HHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT--------------
T ss_pred CccccCCcCHHHHHHHHHCCCCCCCHHHHHHHH-HHHCCCCeEeecccccccceeeeeeecccccc--------------
Confidence 369999999999999999999999999999999 56678999999999999999999999987643
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCC----CeEEEEEEcCCCHHHHHHHh
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYT----PVKVACVVGGMSTEKQLRIL 306 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~----~i~v~~~~G~~~~~~~~~~l 306 (1493)
......+++++|+++++.|.+..+....... ...+.++.|+.+...+....
T Consensus 66 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
T d1q0ua_ 66 -------------------------ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL 120 (209)
T ss_dssp -------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCC
T ss_pred -------------------------ccccccccccccccchhHHHHHHHHhhhccccccccccccccccchhhHHHHHHh
Confidence 1334568999999999999988887765543 35667777777666666667
Q ss_pred cCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhh
Q psy16310 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELK 386 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 386 (1493)
..+++|+|+||+++.+++.+.... +.++.++|+||||++++++|.+++..|+..+
T Consensus 121 ~~~~~Ilv~TP~~l~~~~~~~~~~---~~~l~~lViDEad~ll~~~f~~~v~~I~~~~---------------------- 175 (209)
T d1q0ua_ 121 NVQPHIVIGTPGRINDFIREQALD---VHTAHILVVDEADLMLDMGFITDVDQIAARM---------------------- 175 (209)
T ss_dssp SSCCSEEEECHHHHHHHHHTTCCC---GGGCCEEEECSHHHHHHTTCHHHHHHHHHTS----------------------
T ss_pred ccCceEEEecCchhhhhhhhhccc---cccceEEEEeecccccccccHHHHHHHHHHC----------------------
Confidence 788999999999999998876554 4589999999999999999999999999876
Q ss_pred hhhhhccccCCCCCceEEEEeeccchhhhhhhh
Q psy16310 387 NILDRVTMTETSQPRQTFVFSATLTHSLKNSLN 419 (1493)
Q Consensus 387 ~~~~~~~~~~~~~~~q~il~SATl~~~~~~~~~ 419 (1493)
++.+|+++||||+|+.+.++++
T Consensus 176 -----------~~~~Q~il~SATl~~~v~~l~~ 197 (209)
T d1q0ua_ 176 -----------PKDLQMLVFSATIPEKLKPFLK 197 (209)
T ss_dssp -----------CTTCEEEEEESCCCGGGHHHHH
T ss_pred -----------CCCCEEEEEEccCCHHHHHHHH
Confidence 3457999999999988877664
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.94 E-value=6.2e-27 Score=239.91 Aligned_cols=149 Identities=29% Similarity=0.480 Sum_probs=141.9
Q ss_pred ccceeeEEEecccchhhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCe
Q psy16310 1051 KTLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130 (1493)
Q Consensus 1051 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~V 1130 (1493)
.++.+.++.+...+|...|..++...++++||||+|+++|+.++..|+..|+.+..+||+|++.+|..+++.|+.|+.+|
T Consensus 2 ~nI~~~~i~v~~~~K~~~L~~ll~~~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~i 81 (155)
T d1hv8a2 2 ANIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRI 81 (155)
T ss_dssp SSSEEEEEECCGGGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSE
T ss_pred CCeEEEEEEeChHHHHHHHHHHHccCCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhccccee
Confidence 46788899999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred EEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhcccc
Q psy16310 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKK 1199 (1493)
Q Consensus 1131 LVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~ 1199 (1493)
||||+++++|+|+|++++|||||+|.++..|+||+||+||.|+.|.+++|+++.|...++.+.+.++..
T Consensus 82 lv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~ 150 (155)
T d1hv8a2 82 LIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLK 150 (155)
T ss_dssp EEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCC
T ss_pred eeehhHHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEEEchHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999999999999888887776653
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.5e-27 Score=243.06 Aligned_cols=158 Identities=25% Similarity=0.479 Sum_probs=143.2
Q ss_pred ccccceeeEEEeccc-chhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcC
Q psy16310 1049 ITKTLTESKILCKHD-EKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQ 1126 (1493)
Q Consensus 1049 ~~~~~~~~~~~~~~~-~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g 1126 (1493)
+..++.+.++.|... .|...|..++... ..++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|++|
T Consensus 4 tl~~i~q~~v~v~~~~~K~~~L~~ll~~~~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g 83 (168)
T d2j0sa2 4 TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG 83 (168)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT
T ss_pred CCCCcEEEEEEecChHHHHHHHHHHHHhCCCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhcC
Confidence 356788999888875 4888888887764 56899999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCC
Q psy16310 1127 NNSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFP 1206 (1493)
Q Consensus 1127 ~~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p 1206 (1493)
+.+||||||+++||+|+|+|++|||||+|.+...|+||+||+||.|+.|.+++|+.+.|...++.+.+.++.. ++.+|
T Consensus 84 ~~~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~--i~e~p 161 (168)
T d2j0sa2 84 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQ--IDEMP 161 (168)
T ss_dssp SSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCC--CEECC
T ss_pred CccEEeccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEECHHHHHHHHHHHHHHcCc--CCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999888877643 34445
Q ss_pred CC
Q psy16310 1207 ID 1208 (1493)
Q Consensus 1207 ~~ 1208 (1493)
.+
T Consensus 162 ~~ 163 (168)
T d2j0sa2 162 MN 163 (168)
T ss_dssp SC
T ss_pred cC
Confidence 43
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=5.7e-27 Score=241.00 Aligned_cols=154 Identities=24% Similarity=0.426 Sum_probs=134.4
Q ss_pred ceeeEEEecc-cchhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCe
Q psy16310 1053 LTESKILCKH-DEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 1130 (1493)
Q Consensus 1053 ~~~~~~~~~~-~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~V 1130 (1493)
+.+.++.|.. +.|...|..++... ..++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|+.|+.+|
T Consensus 1 I~q~~~~v~~~e~K~~~L~~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~i 80 (162)
T d1fuka_ 1 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRI 80 (162)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHhCCCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccce
Confidence 3567777765 45888888887765 579999999999999999999999999999999999999999999999999999
Q ss_pred EEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCC
Q psy16310 1131 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID 1208 (1493)
Q Consensus 1131 LVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~ 1208 (1493)
|||||+++||+|+|+|++|||||+|.+++.|+||+|||||.|+.|.|++|+++.|...++.+.+.++.. ++.+|.+
T Consensus 81 Lv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~--~~~ip~~ 156 (162)
T d1fuka_ 81 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQ--IEELPSD 156 (162)
T ss_dssp EEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCC--CEECCSC
T ss_pred eeccccccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEcCHHHHHHHHHHHHHHcCc--CCCCChH
Confidence 999999999999999999999999999999999999999999999999999999999999998887754 3444543
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=6.5e-27 Score=243.82 Aligned_cols=152 Identities=29% Similarity=0.447 Sum_probs=144.1
Q ss_pred ccccceeeEEEecccchhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCC
Q psy16310 1049 ITKTLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQN 1127 (1493)
Q Consensus 1049 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~ 1127 (1493)
+...+.++++.+...+|...|..++... .+++||||+|+.+++.++..|...|+.+..+||+|++.+|..+++.|+.|.
T Consensus 3 tl~~i~q~yi~v~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~ 82 (171)
T d1s2ma2 3 TLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK 82 (171)
T ss_dssp BCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CccceEEEEEEcCHHHHHHHHHHHHHhCCCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccCc
Confidence 3467889999999999999999998876 579999999999999999999999999999999999999999999999999
Q ss_pred CCeEEeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccC
Q psy16310 1128 NSILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKV 1200 (1493)
Q Consensus 1128 ~~VLVaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~ 1200 (1493)
.+|||||++++||+|+|++++|||||+|.++..|+||+||+||.|+.|.+++|+++.|...++.+.+.++..+
T Consensus 83 ~~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~e~~~~~~i~~~l~~~~ 155 (171)
T d1s2ma2 83 VRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEI 155 (171)
T ss_dssp SSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred cccccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEEEeCHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887653
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.93 E-value=5.9e-26 Score=232.57 Aligned_cols=141 Identities=30% Similarity=0.499 Sum_probs=132.1
Q ss_pred cccccccccccCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEE
Q psy16310 519 TLTESKILCKHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598 (1493)
Q Consensus 519 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VL 598 (1493)
.+.+.++.+..+.|...|..++...+.++||||+++.+|+.++..|...++.+..+||++++.+|..+++.|++|+.+||
T Consensus 3 nI~~~~i~v~~~~K~~~L~~ll~~~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~il 82 (155)
T d1hv8a2 3 NIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRIL 82 (155)
T ss_dssp SSEEEEEECCGGGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEE
T ss_pred CeEEEEEEeChHHHHHHHHHHHccCCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcccceee
Confidence 34556677788899999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred EEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 599 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 599 VaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
|||+++++|+|+|+|++||+||+|.|+..|+||+||+||.|+.|.+++|+++.|......+
T Consensus 83 v~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~~~~~~i 143 (155)
T d1hv8a2 83 IATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYI 143 (155)
T ss_dssp EECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHH
T ss_pred eehhHHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEEEchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999887765554
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=3.8e-26 Score=234.75 Aligned_cols=138 Identities=25% Similarity=0.435 Sum_probs=121.8
Q ss_pred cccccc-cCchhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEE
Q psy16310 523 SKILCK-HDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLA 600 (1493)
Q Consensus 523 ~~~~~~-~~~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVa 600 (1493)
.++.|. .+.|...|..++... ..++||||+++..++.++..|...++.+..+||+|++.+|..+++.|+.|+.+||||
T Consensus 4 ~~~~v~~~e~K~~~L~~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~ 83 (162)
T d1fuka_ 4 FYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIS 83 (162)
T ss_dssp EEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEE
T ss_pred EEEEeCCcHHHHHHHHHHHHhCCCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccceeec
Confidence 344454 455888898888775 579999999999999999999999999999999999999999999999999999999
Q ss_pred echhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhh
Q psy16310 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFN 660 (1493)
Q Consensus 601 Tdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~ 660 (1493)
||+++||+|+|+|++||+||+|.++..|+||+|||||+|..|.|++|+++.|...+..+.
T Consensus 84 Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~~~~~~i~ 143 (162)
T d1fuka_ 84 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELE 143 (162)
T ss_dssp EGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHH
T ss_pred cccccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887766654
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=6.7e-26 Score=234.17 Aligned_cols=142 Identities=27% Similarity=0.499 Sum_probs=129.4
Q ss_pred ccccccccccccC-chhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCC
Q psy16310 518 KTLTESKILCKHD-EKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNN 595 (1493)
Q Consensus 518 ~~~~~~~~~~~~~-~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~ 595 (1493)
.++.+.++.+..+ .|...|..++... ..++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.
T Consensus 6 ~~i~q~~v~v~~~~~K~~~L~~ll~~~~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g~~ 85 (168)
T d2j0sa2 6 EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGAS 85 (168)
T ss_dssp TTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSS
T ss_pred CCcEEEEEEecChHHHHHHHHHHHHhCCCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhcCCc
Confidence 3445556666654 5889998888765 4699999999999999999999999999999999999999999999999999
Q ss_pred eEEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 596 SILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 596 ~VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
++||||++++||+|+|+|++|||||+|.++..|+||+|||||+|+.|.+++|+++.|...+..+
T Consensus 86 ~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~~~~~~i 149 (168)
T d2j0sa2 86 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 149 (168)
T ss_dssp CEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHH
T ss_pred cEEeccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEECHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988766554
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.9e-25 Score=236.99 Aligned_cols=139 Identities=19% Similarity=0.379 Sum_probs=129.0
Q ss_pred EEEecccchhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeeh
Q psy16310 1057 KILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 1135 (1493)
Q Consensus 1057 ~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTd 1135 (1493)
+......++...|..++... +.++||||+|+..++.|+..|...|+.+..+||+|++.+|..+++.|++|+++|||||+
T Consensus 9 y~v~~~~~k~~~L~~~l~~~~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd 88 (200)
T d1oywa3 9 YMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV 88 (200)
T ss_dssp EEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT
T ss_pred EEEEcCCcHHHHHHHHHHhcCCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccceEEEecc
Confidence 34456667888888888765 46899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHh
Q psy16310 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNS 1195 (1493)
Q Consensus 1136 v~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~ 1195 (1493)
+++||||+|+|++|||||+|.++.+|+||+|||||.|+.|.|++|+++.|...++++...
T Consensus 89 ~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~~d~~~l~~~i~~ 148 (200)
T d1oywa3 89 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 148 (200)
T ss_dssp TSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHT
T ss_pred hhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEecCHHHHHHHHhhhhc
Confidence 999999999999999999999999999999999999999999999999998888877654
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=2.1e-25 Score=232.26 Aligned_cols=141 Identities=30% Similarity=0.457 Sum_probs=131.9
Q ss_pred cccccccccccCchhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeE
Q psy16310 519 TLTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSI 597 (1493)
Q Consensus 519 ~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~V 597 (1493)
.+.+.++.+....|...|..++... ..++||||+++.+++.|+..|...|+.+..+||+|++.+|..++..|++|..++
T Consensus 6 ~i~q~yi~v~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~~~i 85 (171)
T d1s2ma2 6 GITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRT 85 (171)
T ss_dssp TEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSE
T ss_pred ceEEEEEEcCHHHHHHHHHHHHHhCCCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccCcccc
Confidence 4566778888889999999999876 479999999999999999999999999999999999999999999999999999
Q ss_pred EEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhh
Q psy16310 598 LLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKF 659 (1493)
Q Consensus 598 LVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l 659 (1493)
||||++++||+|+|+|++|||||+|.++..|+||+||+||.|+.|.|++|+++.|...+..+
T Consensus 86 lv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~e~~~~~~i 147 (171)
T d1s2ma2 86 LVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKI 147 (171)
T ss_dssp EEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHH
T ss_pred ccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887666554
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.8e-25 Score=231.41 Aligned_cols=146 Identities=25% Similarity=0.481 Sum_probs=134.2
Q ss_pred ceeeEEEecccchhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeE
Q psy16310 1053 LTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 1131 (1493)
Q Consensus 1053 ~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VL 1131 (1493)
+.++++.+..++|...|..++... ++++||||+++..++.|+..|...|+.+..+||+|++.+|..+++.|++|+++||
T Consensus 2 l~q~~v~~~~~~K~~~L~~ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iL 81 (168)
T d1t5ia_ 2 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRIL 81 (168)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred cEEEEEEeChHHHHHHHHHHHHhCCCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhccccceee
Confidence 678899999999999999998765 5799999999999999999999999999999999999999999999999999999
Q ss_pred EeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCC-HHHHHHHHHhccc
Q psy16310 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE-IPLYIKMFNSLEK 1198 (1493)
Q Consensus 1132 VaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e-~~~~~~~~~~~~~ 1198 (1493)
|||+++++|+|+|++++||+||+|.++..|+||+||+||.|+.|.|++|+++.+ ...+..+.+.++.
T Consensus 82 v~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~ 149 (168)
T d1t5ia_ 82 VATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 149 (168)
T ss_dssp EESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCC
T ss_pred eccccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEEECchHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999998753 4455556555543
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=6e-25 Score=233.15 Aligned_cols=138 Identities=19% Similarity=0.365 Sum_probs=127.3
Q ss_pred ccccCchhhHHHHHHhhCC-CcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechh
Q psy16310 526 LCKHDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVA 604 (1493)
Q Consensus 526 ~~~~~~k~~~l~~~l~~~~-~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~ 604 (1493)
+.....|...|..++.... .++||||+|+..++.|+..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 11 v~~~~~k~~~L~~~l~~~~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd~~ 90 (200)
T d1oywa3 11 LMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAF 90 (200)
T ss_dssp EEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTS
T ss_pred EEcCCcHHHHHHHHHHhcCCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccceEEEecchh
Confidence 3455667888888887664 589999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhhhh
Q psy16310 605 ARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQE 663 (1493)
Q Consensus 605 ~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~~ 663 (1493)
++|||+|+|++|||||+|.++.+|+||+|||||+|.+|.|++|+++.|...+.++....
T Consensus 91 ~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~~d~~~l~~~i~~~ 149 (200)
T d1oywa3 91 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEK 149 (200)
T ss_dssp CTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHTS
T ss_pred hhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEecCHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999988887765433
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.6e-24 Score=221.59 Aligned_cols=133 Identities=27% Similarity=0.518 Sum_probs=124.8
Q ss_pred ccccccccccCchhhHHHHHHhhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEE
Q psy16310 520 LTESKILCKHDEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSIL 598 (1493)
Q Consensus 520 ~~~~~~~~~~~~k~~~l~~~l~~~-~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VL 598 (1493)
+.+.++.+..+.|...|..++... ..++||||+++..++.|+..|...++.+..+||+|++.+|..+++.|++|+.+||
T Consensus 2 l~q~~v~~~~~~K~~~L~~ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iL 81 (168)
T d1t5ia_ 2 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRIL 81 (168)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred cEEEEEEeChHHHHHHHHHHHHhCCCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhccccceee
Confidence 345667778889999999999766 4799999999999999999999999999999999999999999999999999999
Q ss_pred EEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 599 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 599 VaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
|||+++++|+|+|++++||+||+|.++..|+||+||+||.|..|.|++|+++.+
T Consensus 82 v~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~~~ 135 (168)
T d1t5ia_ 82 VATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 135 (168)
T ss_dssp EESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHH
T ss_pred eccccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEEECchH
Confidence 999999999999999999999999999999999999999999999999998743
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=4.3e-23 Score=209.45 Aligned_cols=122 Identities=21% Similarity=0.227 Sum_probs=106.7
Q ss_pred chhhHHHHHHH---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhcc
Q psy16310 1064 EKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 1140 (1493)
Q Consensus 1064 ~k~~~l~~~l~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~G 1140 (1493)
.....++..+. ..+.++||||+|+++|+.++..|...|+.+..+||+|++.+|..++++|++|+++|||||++++||
T Consensus 15 ~qv~dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v~~~G 94 (174)
T d1c4oa2 15 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREG 94 (174)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTT
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeEEEEeeeeeeee
Confidence 33444454443 347799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEecCCC-----ChhHHHHHHhccCCCCCCCeEEEEecCCCH
Q psy16310 1141 LDIPGIEHVIHYHVPR-----TSEIYIHRSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1141 iDip~v~~VI~~d~p~-----s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
+|+|+|++||+||+|. +.++|+||+||+||.|+ |.++++......
T Consensus 95 iDip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~-g~~~~~~~~~~~ 144 (174)
T d1c4oa2 95 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR-GEVWLYADRVSE 144 (174)
T ss_dssp CCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSSCCH
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHhhhhhhcCC-CeeEEeecCCCH
Confidence 9999999999999775 55889999999999875 888877755443
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.88 E-value=7.1e-23 Score=212.24 Aligned_cols=109 Identities=23% Similarity=0.328 Sum_probs=99.6
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEecCC
Q psy16310 1076 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP 1155 (1493)
Q Consensus 1076 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d~p 1155 (1493)
.+.++||||+++.+++.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||++++||||+|+|++|||||+|
T Consensus 30 ~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv~~rGiDip~v~~VI~~d~p 109 (181)
T d1t5la2 30 RNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 109 (181)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESCCCSSSCCCTTEEEEEETTTT
T ss_pred cCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehhHHHccCCCCCCCEEEEecCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-----ChhHHHHHHhccCCCCCCCeEEEEecCCC
Q psy16310 1156 R-----TSEIYIHRSGRTARANNEGLTLVLIESDE 1185 (1493)
Q Consensus 1156 ~-----s~~~yiqr~GR~gR~g~~G~~i~l~~~~e 1185 (1493)
. +..+|+||+|||||.|. |.+++++....
T Consensus 110 ~~~~~~s~~~yi~R~GRagR~g~-~~~~~~~~~~~ 143 (181)
T d1t5la2 110 KEGFLRSERSLIQTIGRAARNAN-GHVIMYADTIT 143 (181)
T ss_dssp SCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSSCC
T ss_pred cccccccHHHHHHHHHhhccccC-ceeEeecchhh
Confidence 6 68899999999999885 55555544433
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.87 E-value=5.4e-23 Score=227.65 Aligned_cols=186 Identities=18% Similarity=0.193 Sum_probs=133.6
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 767 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 767 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
+..|.+..+.+.+ ..+.+.+|.+|+++|..+|+.+ ..|+|++++||||+|||++|++|++....
T Consensus 21 ~~~~~~~~~~~~~-~~~~~~~~~~p~~~Q~~~i~~~-l~g~~~~i~apTGsGKT~~~~~~~~~~~~-------------- 84 (237)
T d1gkub1 21 LCLFPEDFLLKEF-VEFFRKCVGEPRAIQKMWAKRI-LRKESFAATAPTGVGKTSFGLAMSLFLAL-------------- 84 (237)
T ss_dssp CSCCTTHHHHHHH-HHHHHTTTCSCCHHHHHHHHHH-HTTCCEECCCCBTSCSHHHHHHHHHHHHT--------------
T ss_pred cccCccchhHHHH-HHHHHhccCCCCHHHHHHHHHH-HCCCCEEEEecCCChHHHHHHHHHHHHHH--------------
Confidence 3445444444444 4556678999999999999954 57899999999999999999999886542
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEE----EEEEcCCCHHHHHHH
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKV----ACVVGGMSTEKQLRI 922 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v----~~~~gg~~~~~~~~~ 922 (1493)
.+.++|||+||++|+.|+++.+++++...++.+ ....++.....+...
T Consensus 85 ----------------------------~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (237)
T d1gkub1 85 ----------------------------KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENF 136 (237)
T ss_dssp ----------------------------TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHH
T ss_pred ----------------------------hcCeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhh
Confidence 234799999999999999999999988776543 333444444444333
Q ss_pred h--cCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhc--------ccCCCCCceE
Q psy16310 923 L--NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVT--------MTETSQPRQT 992 (1493)
Q Consensus 923 l--~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~--------~~~~~~~~q~ 992 (1493)
+ ...++|+|+||++|.+.+ ..+.++++|||||||.|++.+. .+..++..+. ....+...|+
T Consensus 137 l~~~~~~~Ilv~Tp~~l~~~~-------~~~~~~~~vVvDE~d~~l~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 207 (237)
T d1gkub1 137 MQNLRNFKIVITTTQFLSKHY-------RELGHFDFIFVDDVDAILKASK--NVDKLLHLLGFHYDLKTKSWVGEARGCL 207 (237)
T ss_dssp HHSGGGCSEEEEEHHHHHHCS-------TTSCCCSEEEESCHHHHHTSTH--HHHHHHHHTTEEEETTTTEEEECCSSEE
T ss_pred hccccccceeccChHHHHHhh-------hhcCCCCEEEEEChhhhhhccc--chhHHHHhcCChHHHHHHHhhCCCCCeE
Confidence 3 345799999999876432 2456789999999999987653 3333333321 1123456789
Q ss_pred EEEecccccchHh
Q psy16310 993 FVFSATLTHSLKN 1005 (1493)
Q Consensus 993 ll~SATl~~~~~~ 1005 (1493)
+++|||+++....
T Consensus 208 i~~SAT~~~~~~~ 220 (237)
T d1gkub1 208 MVSTATAKKGKKA 220 (237)
T ss_dssp EECCCCSCCCTTH
T ss_pred EEEeCCCCcccHH
Confidence 9999999876543
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.87 E-value=1.8e-22 Score=209.20 Aligned_cols=108 Identities=22% Similarity=0.324 Sum_probs=99.4
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCC
Q psy16310 543 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP 622 (1493)
Q Consensus 543 ~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P 622 (1493)
.+.++||||+++.+++.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||++++||||+|+|++|||||+|
T Consensus 30 ~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv~~rGiDip~v~~VI~~d~p 109 (181)
T d1t5la2 30 RNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 109 (181)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESCCCSSSCCCTTEEEEEETTTT
T ss_pred cCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehhHHHccCCCCCCCEEEEecCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-----ChHHHHHHHhccccCCCCCeEEEEecCC
Q psy16310 623 R-----TSEIYIHRSGRTARANNEGLTVVLIESD 651 (1493)
Q Consensus 623 ~-----s~~~yiQR~GRagR~g~~G~~i~l~~~~ 651 (1493)
. +...|+||+|||||.| .|.+++++...
T Consensus 110 ~~~~~~s~~~yi~R~GRagR~g-~~~~~~~~~~~ 142 (181)
T d1t5la2 110 KEGFLRSERSLIQTIGRAARNA-NGHVIMYADTI 142 (181)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSC
T ss_pred cccccccHHHHHHHHHhhcccc-CceeEeecchh
Confidence 5 6899999999999988 45555555443
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=3.5e-23 Score=224.13 Aligned_cols=179 Identities=20% Similarity=0.255 Sum_probs=133.4
Q ss_pred cccccCCCCHHHHHHHHHC-CCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCc
Q psy16310 768 AEWVKFNIPETIIRALYQK-GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDS 846 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~-g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 846 (1493)
...+.++|++.+.+.|++. ||+.++|+|.++|+.+ ..|+|+++++|||||||++|.+|++..
T Consensus 2 ~~~e~~~l~~~~~~~l~~~fg~~~~rp~Q~~ai~~~-l~g~~vlv~apTGsGKT~~~~~~~~~~---------------- 64 (206)
T d1oywa2 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTV-LSGRDCLVVMPTGGGKSLCYQIPALLL---------------- 64 (206)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHH-HTTCCEEEECSCHHHHHHHHHHHHHHS----------------
T ss_pred CchhhCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHH-HcCCCEEEEcCCCCCCcchhhhhhhhc----------------
Confidence 4567889999999999987 9999999999999955 477899999999999999999998742
Q ss_pred chhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHH----HHHH
Q psy16310 847 GLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEK----QLRI 922 (1493)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~----~~~~ 922 (1493)
..++++++||++|+.|+.+.++.++ .......+...... ....
T Consensus 65 -----------------------------~~~~~~v~P~~~L~~q~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~ 111 (206)
T d1oywa2 65 -----------------------------NGLTVVVSPLISLMKDQVDQLQANG----VAAACLNSTQTREQQLEVMTGC 111 (206)
T ss_dssp -----------------------------SSEEEEECSCHHHHHHHHHHHHHTT----CCEEEECTTSCHHHHHHHHHHH
T ss_pred -----------------------------cCceEEeccchhhhhhHHHHHHhhc----ccccccccccccccchhHHHHH
Confidence 2369999999999999999998875 33334433333222 2223
Q ss_pred hcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHH-----HHHHHHhcccCCCCCceEEEEec
Q psy16310 923 LNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPEL-----KNILDRVTMTETSQPRQTFVFSA 997 (1493)
Q Consensus 923 l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l-----~~il~~l~~~~~~~~~q~ll~SA 997 (1493)
.....+|+++||.++........ ....+++++|+||||++.++++.... ..+...+ ++.|+++|||
T Consensus 112 ~~~~~~i~~~t~~~~~~~~~~~~---~~~~~v~~lviDEaH~~~~~~~~~~~~~~~~~~l~~~~------~~~~ii~lSA 182 (206)
T d1oywa2 112 RTGQIRLLYIAPERLMLDNFLEH---LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF------PTLPFMALTA 182 (206)
T ss_dssp HHTCCSEEEECHHHHTSTTHHHH---HTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHC------TTSCEEEEES
T ss_pred hcCCceEEEEechhhhchhhccc---chhheeeeeeeeeeeeeeccccchHHHHHHHHHHHHhC------CCCceEEEEe
Confidence 44567999999998754432222 23457899999999999888753221 2222222 4689999999
Q ss_pred ccccchHh
Q psy16310 998 TLTHSLKN 1005 (1493)
Q Consensus 998 Tl~~~~~~ 1005 (1493)
|+++.+.+
T Consensus 183 Tl~~~v~~ 190 (206)
T d1oywa2 183 TADDTTRQ 190 (206)
T ss_dssp CCCHHHHH
T ss_pred CCCHHHHH
Confidence 99876543
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.87 E-value=7.8e-23 Score=220.35 Aligned_cols=175 Identities=17% Similarity=0.176 Sum_probs=138.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHH
Q psy16310 158 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 237 (1493)
Q Consensus 158 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 237 (1493)
+++.+...|.+.||.+|+|+|.++++ .+..|+|+++++|||||||++|.++++..+.+
T Consensus 10 ~~~~~~~~l~~~g~~~l~~~Q~~ai~-~l~~~~~~il~apTGsGKT~~a~l~i~~~~~~--------------------- 67 (202)
T d2p6ra3 10 ISSYAVGILKEEGIEELFPPQAEAVE-KVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------------------- 67 (202)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHH-HHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------------------
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHH-HHHcCCCEEEEcCCCCchhHHHHHHHHHHhhc---------------------
Confidence 67889999999999999999999998 55678999999999999999999999876632
Q ss_pred HHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCc
Q psy16310 238 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 317 (1493)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP 317 (1493)
+.++|+|+||++|+.|+.+.++++... ...+....|+..... .....++|+++||
T Consensus 68 ---------------------~~~vl~l~P~~~L~~q~~~~~~~~~~~-~~~v~~~~~~~~~~~---~~~~~~~ii~~~~ 122 (202)
T d2p6ra3 68 ---------------------GGKSLYVVPLRALAGEKYESFKKWEKI-GLRIGISTGDYESRD---EHLGDCDIIVTTS 122 (202)
T ss_dssp ---------------------TCCEEEEESSHHHHHHHHHHHTTTTTT-TCCEEEECSSCBCCS---SCSTTCSEEEEEH
T ss_pred ---------------------cCcceeecccHHHHHHHHHHHHHHhhc-cccceeeccCccccc---ccccccceeeecc
Confidence 246999999999999999999887653 456666666644322 2234578999999
Q ss_pred HHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcchhhhhhhhccccCC
Q psy16310 318 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPELKNILDRVTMTET 397 (1493)
Q Consensus 318 ~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1493)
..+..++.+... .+.++++||+||||++.+..+...++.++..+...
T Consensus 123 ~~~~~~~~~~~~---~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~------------------------------ 169 (202)
T d2p6ra3 123 EKADSLIRNRAS---WIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM------------------------------ 169 (202)
T ss_dssp HHHHHHHHTTCS---GGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHhccch---hhhhhhhccccHHHHhcccccchHHHHHHHHHHhc------------------------------
Confidence 999988876543 35578999999999998888888777777766432
Q ss_pred CCCceEEEEeeccch
Q psy16310 398 SQPRQTFVFSATLTH 412 (1493)
Q Consensus 398 ~~~~q~il~SATl~~ 412 (1493)
+++.|+++||||+++
T Consensus 170 ~~~~~~l~lSATl~n 184 (202)
T d2p6ra3 170 NKALRVIGLSATAPN 184 (202)
T ss_dssp CTTCEEEEEECCCTT
T ss_pred CCCCcEEEEcCCCCc
Confidence 445799999999975
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.87 E-value=8.4e-23 Score=220.11 Aligned_cols=175 Identities=17% Similarity=0.177 Sum_probs=136.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHH
Q psy16310 775 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 854 (1493)
Q Consensus 775 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 854 (1493)
+++.++..|.+.||.+|+|+|.++++. +..|+|+++++|||||||++|.++++..+..
T Consensus 10 ~~~~~~~~l~~~g~~~l~~~Q~~ai~~-l~~~~~~il~apTGsGKT~~a~l~i~~~~~~--------------------- 67 (202)
T d2p6ra3 10 ISSYAVGILKEEGIEELFPPQAEAVEK-VFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------------------- 67 (202)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHH-HTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------------------
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCCchhHHHHHHHHHHhhc---------------------
Confidence 577899999999999999999999985 5578899999999999999999999876632
Q ss_pred HHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECc
Q psy16310 855 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATP 934 (1493)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP 934 (1493)
+.++|||+||++|+.|+.+.++.+... ..++....|+..... .....++|+++||
T Consensus 68 ---------------------~~~vl~l~P~~~L~~q~~~~~~~~~~~-~~~v~~~~~~~~~~~---~~~~~~~ii~~~~ 122 (202)
T d2p6ra3 68 ---------------------GGKSLYVVPLRALAGEKYESFKKWEKI-GLRIGISTGDYESRD---EHLGDCDIIVTTS 122 (202)
T ss_dssp ---------------------TCCEEEEESSHHHHHHHHHHHTTTTTT-TCCEEEECSSCBCCS---SCSTTCSEEEEEH
T ss_pred ---------------------cCcceeecccHHHHHHHHHHHHHHhhc-cccceeeccCccccc---ccccccceeeecc
Confidence 236999999999999999999887643 355666666543221 1224578999999
Q ss_pred HHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEeccccc
Q psy16310 935 GRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001 (1493)
Q Consensus 935 ~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~ 1001 (1493)
..+..++..... .+..+++||+||||++.++.+...+..++..+... +++.|++++|||+++
T Consensus 123 ~~~~~~~~~~~~---~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~--~~~~~~l~lSATl~n 184 (202)
T d2p6ra3 123 EKADSLIRNRAS---WIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM--NKALRVIGLSATAPN 184 (202)
T ss_dssp HHHHHHHHTTCS---GGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH--CTTCEEEEEECCCTT
T ss_pred HHHHHHHhccch---hhhhhhhccccHHHHhcccccchHHHHHHHHHHhc--CCCCcEEEEcCCCCc
Confidence 999888876542 46678999999999999888877777777666432 356899999999975
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=3.2e-22 Score=203.03 Aligned_cols=109 Identities=22% Similarity=0.283 Sum_probs=100.7
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEecCC
Q psy16310 543 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYHVP 622 (1493)
Q Consensus 543 ~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd~P 622 (1493)
.+.++||||+|+..|+.|+..|...|+.+..+||+|++.+|.++++.|++|++.|||||++++||||+|+|++||+||+|
T Consensus 30 ~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v~~~GiDip~V~~Vi~~~~~ 109 (174)
T d1c4oa2 30 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 109 (174)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeEEEEeeeeeeeeccCCCCcEEEEeccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred C-----ChHHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 623 R-----TSEIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 623 ~-----s~~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
. +...|+||+|||||.| .|.+++++....
T Consensus 110 ~~~~~~~~~~~iq~~GR~gR~~-~g~~~~~~~~~~ 143 (174)
T d1c4oa2 110 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVS 143 (174)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCC
T ss_pred cccccchhHHHHHHhhhhhhcC-CCeeEEeecCCC
Confidence 5 5688999999999988 588777765433
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.86 E-value=1.6e-22 Score=223.92 Aligned_cols=192 Identities=17% Similarity=0.191 Sum_probs=132.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 151 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 151 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
..|.+..+.+.+ ..+.+.++.+|+++|+++++. +..|+|++++||||||||++|+++++....
T Consensus 22 ~~~~~~~~~~~~-~~~~~~~~~~p~~~Q~~~i~~-~l~g~~~~i~apTGsGKT~~~~~~~~~~~~--------------- 84 (237)
T d1gkub1 22 CLFPEDFLLKEF-VEFFRKCVGEPRAIQKMWAKR-ILRKESFAATAPTGVGKTSFGLAMSLFLAL--------------- 84 (237)
T ss_dssp SCCTTHHHHHHH-HHHHHTTTCSCCHHHHHHHHH-HHTTCCEECCCCBTSCSHHHHHHHHHHHHT---------------
T ss_pred ccCccchhHHHH-HHHHHhccCCCCHHHHHHHHH-HHCCCCEEEEecCCChHHHHHHHHHHHHHH---------------
Confidence 344444444444 445677899999999999995 558899999999999999999999886542
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeE----EEEEEcCCCHHHHHHHh
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVK----VACVVGGMSTEKQLRIL 306 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~----v~~~~G~~~~~~~~~~l 306 (1493)
.+.++|||+||++|+.|+++.+++++...++. +....++.........+
T Consensus 85 ---------------------------~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 137 (237)
T d1gkub1 85 ---------------------------KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFM 137 (237)
T ss_dssp ---------------------------TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHH
T ss_pred ---------------------------hcCeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhh
Confidence 24579999999999999999999988776644 34444444444433333
Q ss_pred --cCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCChhhHHHHHHhhccccCCCccccccccCCcch
Q psy16310 307 --NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTMIESGHFPE 384 (1493)
Q Consensus 307 --~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~~~~ 384 (1493)
...++|+|+||++|.+.+ ..+.++++|||||||+|++.+. .+..++..+.......
T Consensus 138 ~~~~~~~Ilv~Tp~~l~~~~-------~~~~~~~~vVvDE~d~~l~~~~--~~~~~~~~~g~~~~~~------------- 195 (237)
T d1gkub1 138 QNLRNFKIVITTTQFLSKHY-------RELGHFDFIFVDDVDAILKASK--NVDKLLHLLGFHYDLK------------- 195 (237)
T ss_dssp HSGGGCSEEEEEHHHHHHCS-------TTSCCCSEEEESCHHHHHTSTH--HHHHHHHHTTEEEETT-------------
T ss_pred ccccccceeccChHHHHHhh-------hhcCCCCEEEEEChhhhhhccc--chhHHHHhcCChHHHH-------------
Confidence 345799999999986532 2355789999999999986543 3444443332110000
Q ss_pred hhhhhhhccccCCCCCceEEEEeeccchhhh
Q psy16310 385 LKNILDRVTMTETSQPRQTFVFSATLTHSLK 415 (1493)
Q Consensus 385 ~~~~~~~~~~~~~~~~~q~il~SATl~~~~~ 415 (1493)
..........|++++|||+++.+.
T Consensus 196 -------~~~~~~~~~~~~i~~SAT~~~~~~ 219 (237)
T d1gkub1 196 -------TKSWVGEARGCLMVSTATAKKGKK 219 (237)
T ss_dssp -------TTEEEECCSSEEEECCCCSCCCTT
T ss_pred -------HHHhhCCCCCeEEEEeCCCCcccH
Confidence 001112455789999999986543
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=2e-22 Score=218.12 Aligned_cols=150 Identities=21% Similarity=0.260 Sum_probs=113.9
Q ss_pred cccccCCCHHHHHHHHHC-CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCcc
Q psy16310 152 EWVKFNIPETIIRALYQK-GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 230 (1493)
Q Consensus 152 ~f~~l~l~~~l~~~l~~~-g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 230 (1493)
..+.++|++.+...|.+. ||+.++|+|.++|+ ++..|+|+++++|||||||++|.+|++..
T Consensus 3 ~~e~~~l~~~~~~~l~~~fg~~~~rp~Q~~ai~-~~l~g~~vlv~apTGsGKT~~~~~~~~~~----------------- 64 (206)
T d1oywa2 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIID-TVLSGRDCLVVMPTGGGKSLCYQIPALLL----------------- 64 (206)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHH-HHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------------
T ss_pred chhhCCCCHHHHHHHHHhcCCCCCCHHHHHHHH-HHHcCCCEEEEcCCCCCCcchhhhhhhhc-----------------
Confidence 456788999999999888 99999999999998 55578999999999999999999998732
Q ss_pred chHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHH----HHHHHh
Q psy16310 231 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTE----KQLRIL 306 (1493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~----~~~~~l 306 (1493)
..++++++|+++|+.|+.+.+..++.. .....+..... ......
T Consensus 65 ----------------------------~~~~~~v~P~~~L~~q~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 112 (206)
T d1oywa2 65 ----------------------------NGLTVVVSPLISLMKDQVDQLQANGVA----AACLNSTQTREQQLEVMTGCR 112 (206)
T ss_dssp ----------------------------SSEEEEECSCHHHHHHHHHHHHHTTCC----EEEECTTSCHHHHHHHHHHHH
T ss_pred ----------------------------cCceEEeccchhhhhhHHHHHHhhccc----ccccccccccccchhHHHHHh
Confidence 246999999999999999999887532 33333333322 222333
Q ss_pred cCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchhhhcCCh
Q psy16310 307 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHF 354 (1493)
Q Consensus 307 ~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll~~~~~ 354 (1493)
....+|+++||..+........ .....+.++|+||||++.++++.
T Consensus 113 ~~~~~i~~~t~~~~~~~~~~~~---~~~~~v~~lviDEaH~~~~~~~~ 157 (206)
T d1oywa2 113 TGQIRLLYIAPERLMLDNFLEH---LAHWNPVLLAVDEAHCISQWGHD 157 (206)
T ss_dssp HTCCSEEEECHHHHTSTTHHHH---HTTSCEEEEEESSGGGGCTTSSC
T ss_pred cCCceEEEEechhhhchhhccc---chhheeeeeeeeeeeeeeccccc
Confidence 4567999999998754332221 12447899999999999877653
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=6.1e-21 Score=197.32 Aligned_cols=176 Identities=18% Similarity=0.301 Sum_probs=150.6
Q ss_pred HhCCCcEEEEecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEE
Q psy16310 1074 LQHPGRTLVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 1151 (1493)
Q Consensus 1074 ~~~~~~~IVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~ 1151 (1493)
...++++.+.||.+...+.++..+... ++++..+||.|+..+++.++..|++|+++|||||++++.|||+|+++++|.
T Consensus 28 l~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIEvGiDvpnA~~iiI 107 (211)
T d2eyqa5 28 ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII 107 (211)
T ss_dssp HTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE
T ss_pred HHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhhhhccCCCCCcEEEE
Confidence 346899999999999999999999875 678899999999999999999999999999999999999999999999999
Q ss_pred ecCCC-ChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy16310 1152 YHVPR-TSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPIDESVLSLIKKRIDLAKSIEYLES 1230 (1493)
Q Consensus 1152 ~d~p~-s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~ 1230 (1493)
++... ...++.|..||+||.+..|+|++++.+... +.....+|+++......+++
T Consensus 108 ~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~~~~~~------------------------~~~~a~~RL~~l~~~~dlg~ 163 (211)
T d2eyqa5 108 ERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKA------------------------MTTDAQKRLEAIASLEDLGA 163 (211)
T ss_dssp TTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGGG------------------------SCHHHHHHHHHHTTCCSBSH
T ss_pred ecchhccccccccccceeeecCccceEEEEecCCcC------------------------CCchHHHHHHHHHhcccCCc
Confidence 99997 778888888999999999999999854321 11234455666666666667
Q ss_pred hhhccCCchHHHHHhhhhhhcccccchhccccCChhHHHHHHHHHHh
Q psy16310 1231 KIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEK 1277 (1493)
Q Consensus 1231 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1277 (1493)
++..+..+..+|++|...+..|+| .+...+|++|.+|+++..+
T Consensus 164 GF~iA~~DL~iRG~G~llG~~QsG----~~~~~~~~l~~~ll~~a~~ 206 (211)
T d2eyqa5 164 GFALATHDLEIRGAGELLGEEQSG----SMETIGFSLYMELLENAVD 206 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHH----HHHHHCHHHHHHHHHHHHH
T ss_pred ceeeeHhHHhhcCCccccccccCC----chhhccHHHHHHHHHHHHH
Confidence 777778899999999999999999 5666799999999987765
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.82 E-value=2.9e-21 Score=190.44 Aligned_cols=101 Identities=23% Similarity=0.417 Sum_probs=92.8
Q ss_pred hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEEEec-
Q psy16310 1075 QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH- 1153 (1493)
Q Consensus 1075 ~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~~d- 1153 (1493)
..++++||||+|+..|+.|+..|...|+.+..+||+|++. .|++|+.+||||||+++|||| |++++||||+
T Consensus 33 ~~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~-------~~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~~ 104 (138)
T d1jr6a_ 33 IKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVS-------VIPTNGDVVVVATDALMTGFT-GDFDSVIDCNT 104 (138)
T ss_dssp HTTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSC-------CCTTSSCEEEEESSSSCSSSC-CCBSEEEECSE
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhh-------hhhhhhcceeehhHHHHhccc-cccceEEEEEe
Confidence 3568999999999999999999999999999999999864 478999999999999999999 9999999855
Q ss_pred ---CCCChhHHHHHHhccCCCCCCCeEEEEecCCC
Q psy16310 1154 ---VPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185 (1493)
Q Consensus 1154 ---~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e 1185 (1493)
+|.+.++|+||+||||| |++|. ++|+.|.|
T Consensus 105 ~~~~P~~~~~y~qr~GR~gR-g~~G~-~~~i~~~e 137 (138)
T d1jr6a_ 105 SDGKPQDAVSRTQRRGRTGR-GKPGI-YRFVAPGE 137 (138)
T ss_dssp ETTEECCHHHHHHHHTTBCS-SSCEE-EEECCSSC
T ss_pred cCCCCCCHHHHHhHhccccC-CCCcE-EEEEcCCC
Confidence 69999999999999999 99995 77888876
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.81 E-value=8.2e-21 Score=187.23 Aligned_cols=100 Identities=23% Similarity=0.423 Sum_probs=92.0
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEec--
Q psy16310 543 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH-- 620 (1493)
Q Consensus 543 ~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd-- 620 (1493)
.++++||||+|+..|+.|+..|...|+.+..+||+|++. .|++|+.+|||||++++|||| |++++|||||
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~-------~~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~~~ 105 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVS-------VIPTNGDVVVVATDALMTGFT-GDFDSVIDCNTS 105 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSC-------CCTTSSCEEEEESSSSCSSSC-CCBSEEEECSEE
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhh-------hhhhhhcceeehhHHHHhccc-cccceEEEEEec
Confidence 467999999999999999999999999999999999864 478999999999999999999 9999999855
Q ss_pred --CCCChHHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 621 --VPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 621 --~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
+|.++.+|+||+||||| |++|. ++|+++.|
T Consensus 106 ~~~P~~~~~y~qr~GR~gR-g~~G~-~~~i~~~e 137 (138)
T d1jr6a_ 106 DGKPQDAVSRTQRRGRTGR-GKPGI-YRFVAPGE 137 (138)
T ss_dssp TTEECCHHHHHHHHTTBCS-SSCEE-EEECCSSC
T ss_pred CCCCCCHHHHHhHhccccC-CCCcE-EEEEcCCC
Confidence 69999999999999999 99995 77888876
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.81 E-value=2e-19 Score=193.36 Aligned_cols=133 Identities=23% Similarity=0.285 Sum_probs=108.6
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
+|+++|.+++..+. ++|+|+++|||||||++|++++...+.+
T Consensus 9 ~pr~~Q~~~~~~~~--~~n~lv~~pTGsGKT~i~~~~~~~~~~~------------------------------------ 50 (200)
T d1wp9a1 9 QPRIYQEVIYAKCK--ETNCLIVLPTGLGKTLIAMMIAEYRLTK------------------------------------ 50 (200)
T ss_dssp CCCHHHHHHHHHGG--GSCEEEECCTTSCHHHHHHHHHHHHHHH------------------------------------
T ss_pred CCCHHHHHHHHHHh--cCCeEEEeCCCCcHHHHHHHHHHHHHHh------------------------------------
Confidence 69999999997443 4689999999999999999888766532
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcccc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~ 332 (1493)
.+.++||++||++|+.|+++.+..+....+.++....++.........+. .++|+|+||+.+...+......
T Consensus 51 -----~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~i~t~~~~~~~~~~~~~~-- 122 (200)
T d1wp9a1 51 -----YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-RAKVIVATPQTIENDLLAGRIS-- 122 (200)
T ss_dssp -----SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSCC--
T ss_pred -----cCCcEEEEcCchHHHHHHHHHHHHhhcccccceeeeecccchhHHHHhhh-cccccccccchhHHHHhhhhhh--
Confidence 22469999999999999999999998888888888888877766544443 3589999999999988876543
Q ss_pred ccccccEEEEecCchhhhcC
Q psy16310 333 ELYKINYLVIDETDRMIESG 352 (1493)
Q Consensus 333 ~l~~i~~lViDEAh~ll~~~ 352 (1493)
+.++++||+||||++....
T Consensus 123 -~~~~~~vIiDE~H~~~~~~ 141 (200)
T d1wp9a1 123 -LEDVSLIVFDEAHRAVGNY 141 (200)
T ss_dssp -TTSCSEEEEETGGGCSTTC
T ss_pred -ccccceEEEEehhhhhcch
Confidence 4478999999999886544
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.80 E-value=3.1e-19 Score=191.90 Aligned_cols=164 Identities=20% Similarity=0.235 Sum_probs=125.4
Q ss_pred CCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchh
Q psy16310 789 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 868 (1493)
Q Consensus 789 ~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1493)
-+|+++|.+++..+. ++|+|+++|||||||++|++++...+..
T Consensus 8 ~~pr~~Q~~~~~~~~--~~n~lv~~pTGsGKT~i~~~~~~~~~~~----------------------------------- 50 (200)
T d1wp9a1 8 IQPRIYQEVIYAKCK--ETNCLIVLPTGLGKTLIAMMIAEYRLTK----------------------------------- 50 (200)
T ss_dssp HCCCHHHHHHHHHGG--GSCEEEECCTTSCHHHHHHHHHHHHHHH-----------------------------------
T ss_pred CCCCHHHHHHHHHHh--cCCeEEEeCCCCcHHHHHHHHHHHHHHh-----------------------------------
Confidence 479999999997543 4689999999999999999887765522
Q ss_pred hhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCcc
Q psy16310 869 FVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHL 948 (1493)
Q Consensus 869 ~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~ 948 (1493)
.+.++||++||++|+.|+++.+.+++...+.++....++.........+. .++|+++||+.+...+.....
T Consensus 51 ------~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~i~t~~~~~~~~~~~~~-- 121 (200)
T d1wp9a1 51 ------YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-RAKVIVATPQTIENDLLAGRI-- 121 (200)
T ss_dssp ------SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSC--
T ss_pred ------cCCcEEEEcCchHHHHHHHHHHHHhhcccccceeeeecccchhHHHHhhh-cccccccccchhHHHHhhhhh--
Confidence 23369999999999999999999998888888888888877766544443 358999999999988876553
Q ss_pred ccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccchH
Q psy16310 949 TELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSLK 1004 (1493)
Q Consensus 949 ~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~~ 1004 (1493)
.+.++++||+||||++........+...+... ....+++++|||++....
T Consensus 122 -~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~-----~~~~~~l~~SATp~~~~~ 171 (200)
T d1wp9a1 122 -SLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQ-----AKNPLVIGLTASPGSTPE 171 (200)
T ss_dssp -CTTSCSEEEEETGGGCSTTCHHHHHHHHHHHH-----CSSCCEEEEESCSCSSHH
T ss_pred -hccccceEEEEehhhhhcchhHHHHHHHHHhc-----CCCCcEEEEEecCCCcHH
Confidence 35678999999999987654333333222222 245689999999865443
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=2e-20 Score=196.43 Aligned_cols=173 Identities=16% Similarity=0.223 Sum_probs=121.5
Q ss_pred chhhHHHHHHHh---CCCcEEEEecchhhHHH--------HHHHHHh-c--CCCccccccCCCHHHHHHHHHHHhcCCCC
Q psy16310 1064 EKDSYLYYFILQ---HPGRTLVFCNSISSVKR--------LTQLLTM-L--KCSPLPLHASMNQRQRLKNLDRFRDQNNS 1129 (1493)
Q Consensus 1064 ~k~~~l~~~l~~---~~~~~IVF~~s~~~~~~--------l~~~L~~-~--~~~~~~lhg~m~~~~R~~~~~~F~~g~~~ 1129 (1493)
++...++.++.. .++++.|+||.++..+. .+..|.. . ++.+..+||+|++.+|+.++.+|++|+++
T Consensus 13 ~~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~ 92 (206)
T d1gm5a4 13 DRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYD 92 (206)
T ss_dssp STHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSS
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEE
Confidence 344455555543 57899999987754443 3333332 2 56788999999999999999999999999
Q ss_pred eEEeehhhhccccCCCccEEEEecCCCC-hhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHHHhccccCCCCCCCCC
Q psy16310 1130 ILLATDVAARGLDIPGIEHVIHYHVPRT-SEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMFNSLEKKVDLPDFPID 1208 (1493)
Q Consensus 1130 VLVaTdv~~~GiDip~v~~VI~~d~p~s-~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~~~~~~~~~~~~~p~~ 1208 (1493)
|||||+++++|||+|++++||++++|.. .++|.|..||+||.|++|+|++++.+.......++..
T Consensus 93 iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~~~~~~~~~rl~~-------------- 158 (206)
T d1gm5a4 93 ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLRF-------------- 158 (206)
T ss_dssp BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHHHH--------------
T ss_pred EEEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeEeeeccccccchhhhhh--------------
Confidence 9999999999999999999999999985 5555666899999999999999987655433333311
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCchHHHHHhhhhhhcccccchhccccCChhHHHH
Q psy16310 1209 ESVLSLIKKRIDLAKSIEYLESKIKKNRPDNWLHRSGRTARANNEGLTLVLIESDEIPLYIK 1270 (1493)
Q Consensus 1209 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1270 (1493)
+.....++..+..+.-+|+.|...+..|+| ...-..+++|..
T Consensus 159 ----------------~~~~~dGf~ia~~Dl~lRG~G~~lG~~QsG----~~~~~~~~l~~d 200 (206)
T d1gm5a4 159 ----------------FTLNTDGFKIAEYDLKTRGPGEFFGVKQHG----LSGFKVADLYRD 200 (206)
T ss_dssp ----------------HHTCCCSHHHHHHHHHSSCCCC----CCCS----SCCSCCHHHHHH
T ss_pred ----------------ccccCCCchHHHHHHhccCCccccccccCC----CCccEEEehhhh
Confidence 111123444445677788899999999999 344456677753
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.76 E-value=6.2e-19 Score=200.49 Aligned_cols=125 Identities=25% Similarity=0.349 Sum_probs=107.0
Q ss_pred CchhhHHHHHHh-----hCCCcEEEEecchhhHHHHHHHHHhcCCCcccccc--------CCCHHHHHHHHHHHhcCCCe
Q psy16310 530 DEKDSYLYYFIL-----QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHA--------SMNQRQRLKNLDRFRDQNNS 596 (1493)
Q Consensus 530 ~~k~~~l~~~l~-----~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg--------~~~~~~R~~vl~~Fr~g~~~ 596 (1493)
+.|...+..++. ..+.++||||+++.++..++..|...++.+..+|| +|++.+|..+++.|++|+++
T Consensus 142 ~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~ 221 (286)
T d1wp9a2 142 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 221 (286)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS
T ss_pred CcHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCc
Confidence 345555555543 23679999999999999999999998888877765 57778999999999999999
Q ss_pred EEEEechhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchh
Q psy16310 597 ILLATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPL 655 (1493)
Q Consensus 597 VLVaTdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~ 655 (1493)
|||||+++++|||+|+|++||+||+|.|+..|+||+|||||.+ +|.+++|++++....
T Consensus 222 vLv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~-~~~~~~l~~~~~~ee 279 (286)
T d1wp9a2 222 VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-PGRVIILMAKGTRDE 279 (286)
T ss_dssp EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC-CSEEEEEEETTSHHH
T ss_pred EEEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCC-CCEEEEEEeCCCHHH
Confidence 9999999999999999999999999999999999999999975 899999998876543
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.75 E-value=1.5e-18 Score=184.32 Aligned_cols=120 Identities=21% Similarity=0.313 Sum_probs=103.4
Q ss_pred HHHHHHhCCCcEEEEecchhhHHHHHHHHHhc------------------------------CCCccccccCCCHHHHHH
Q psy16310 1069 LYYFILQHPGRTLVFCNSISSVKRLTQLLTML------------------------------KCSPLPLHASMNQRQRLK 1118 (1493)
Q Consensus 1069 l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~------------------------------~~~~~~lhg~m~~~~R~~ 1118 (1493)
++.-+...++++||||+|++.|+.++..|... ..+++.|||+|++.+|..
T Consensus 32 l~~~~i~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~ 111 (201)
T d2p6ra4 32 LVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRV 111 (201)
T ss_dssp HHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHH
T ss_pred HHHHHHHcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHH
Confidence 33334445789999999999999888887542 134788999999999999
Q ss_pred HHHHHhcCCCCeEEeehhhhccccCCCccEEEE-------ecCCCChhHHHHHHhccCCCCC--CCeEEEEecCCCHHH
Q psy16310 1119 NLDRFRDQNNSILLATDVAARGLDIPGIEHVIH-------YHVPRTSEIYIHRSGRTARANN--EGLTLVLIESDEIPL 1188 (1493)
Q Consensus 1119 ~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI~-------~d~p~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~e~~~ 1188 (1493)
+++.|++|.++|||||+++++|||+|++++||+ ++.|.+..+|+||+|||||.|. .|.+++++.+.+...
T Consensus 112 ie~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~~~~ 190 (201)
T d2p6ra4 112 VEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREI 190 (201)
T ss_dssp HHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHH
T ss_pred HHHHHhCCCceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCCChHH
Confidence 999999999999999999999999999999996 6778899999999999999984 789999988876543
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.73 E-value=2.5e-18 Score=182.54 Aligned_cols=115 Identities=21% Similarity=0.341 Sum_probs=101.1
Q ss_pred hhCCCcEEEEecchhhHHHHHHHHHhc------------------------------CCCccccccCCCHHHHHHHHHHH
Q psy16310 541 LQHPGRTLVFCNSISSVKRLTQLLTML------------------------------KCSPLPLHASMNQRQRLKNLDRF 590 (1493)
Q Consensus 541 ~~~~~~~IIF~~s~~~a~~L~~~L~~~------------------------------~~~~~~lhg~~~~~~R~~vl~~F 590 (1493)
...++++||||+||..|+.++..|... ..+++.|||+|++.+|..+++.|
T Consensus 37 i~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~ie~~f 116 (201)
T d2p6ra4 37 VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAF 116 (201)
T ss_dssp HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHH
T ss_pred HHcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHHHHHHH
Confidence 345689999999999999888777532 23478899999999999999999
Q ss_pred hcCCCeEEEEechhhccCCCCCCcEEEE-------ecCCCChHHHHHHHhccccCCC--CCeEEEEecCCcchh
Q psy16310 591 RDQNNSILLATDVAARGLDIPGIEHVIH-------YHVPRTSEIYIHRSGRTARANN--EGLTVVLIESDEIPL 655 (1493)
Q Consensus 591 r~g~~~VLVaTdv~~rGlDip~v~~VI~-------yd~P~s~~~yiQR~GRagR~g~--~G~~i~l~~~~e~~~ 655 (1493)
++|.++|||||+++++|||+|.+++||+ ++.|.++.+|+||+|||||.|. .|.|++++.+.+...
T Consensus 117 ~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~~~~ 190 (201)
T d2p6ra4 117 RRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREI 190 (201)
T ss_dssp HTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHH
T ss_pred hCCCceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCCChHH
Confidence 9999999999999999999999999996 7788999999999999999885 699999988876543
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.73 E-value=3.5e-18 Score=194.19 Aligned_cols=122 Identities=25% Similarity=0.364 Sum_probs=104.5
Q ss_pred hhhHHHHHHH-----hCCCcEEEEecchhhHHHHHHHHHhcCCCcccccc--------CCCHHHHHHHHHHHhcCCCCeE
Q psy16310 1065 KDSYLYYFIL-----QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHA--------SMNQRQRLKNLDRFRDQNNSIL 1131 (1493)
Q Consensus 1065 k~~~l~~~l~-----~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg--------~m~~~~R~~~~~~F~~g~~~VL 1131 (1493)
|...+..++. ..+.++||||+++.+++.++..|...++.+..+|| +|++.+|..+++.|++|+++||
T Consensus 144 K~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~vL 223 (286)
T d1wp9a2 144 KMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVL 223 (286)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEE
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCcEE
Confidence 4444444443 33679999999999999999999998888777655 6777899999999999999999
Q ss_pred EeehhhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHH
Q psy16310 1132 LATDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIP 1187 (1493)
Q Consensus 1132 VaTdv~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~ 1187 (1493)
|||+++++|||+|+|++||+||+|.++..|+||+||+||.+ .|.+++|++++...
T Consensus 224 v~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~-~~~~~~l~~~~~~e 278 (286)
T d1wp9a2 224 VATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-PGRVIILMAKGTRD 278 (286)
T ss_dssp EECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC-CSEEEEEEETTSHH
T ss_pred EEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCC-CCEEEEEEeCCCHH
Confidence 99999999999999999999999999999999999999975 79999999887654
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.71 E-value=2e-19 Score=199.51 Aligned_cols=123 Identities=13% Similarity=0.205 Sum_probs=108.0
Q ss_pred cccchhhHHHHHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEee----hh
Q psy16310 1061 KHDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT----DV 1136 (1493)
Q Consensus 1061 ~~~~k~~~l~~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaT----dv 1136 (1493)
..+++...|..++...++++||||+|+..|+.++..|.. .+||+|++.+|..++++|++|+++||||| ++
T Consensus 9 ~~~~~~~~l~~~l~~~~~~~iif~~~~~~~~~l~~~l~~------~~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~~v 82 (248)
T d1gkub2 9 VNDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKN------KFRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGT 82 (248)
T ss_dssp ESCCCTTTTHHHHTTSCSCEEEEESSHHHHHHHHHTTTT------SSCEEECTTSSSHHHHHHHHTSCSEEEEECC----
T ss_pred cCchHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH------hccCCCCHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 356788888889988788999999999999999999975 38999999999999999999999999999 89
Q ss_pred hhccccCCC-ccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCCHHHHHHHH
Q psy16310 1137 AARGLDIPG-IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDEIPLYIKMF 1193 (1493)
Q Consensus 1137 ~~~GiDip~-v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e~~~~~~~~ 1193 (1493)
++||||+|+ |++|||||+|+ |.||+||+||+|+.|.+++++.+.+...+..+.
T Consensus 83 ~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~~~~~~~~~~~~~~~~~l~ 136 (248)
T d1gkub2 83 LVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLL 136 (248)
T ss_dssp --CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTC
T ss_pred hhhccCccccccEEEEeCCCc----chhhhhhhhccCcceEeeeeccHhhHHHHHHHH
Confidence 999999996 99999999994 889999999999999999999988887765543
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.70 E-value=3.9e-19 Score=197.11 Aligned_cols=123 Identities=12% Similarity=0.185 Sum_probs=107.6
Q ss_pred cCchhhHHHHHHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEe----chh
Q psy16310 529 HDEKDSYLYYFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT----DVA 604 (1493)
Q Consensus 529 ~~~k~~~l~~~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaT----dv~ 604 (1493)
.+.+...|..++...++++||||+++.+|+.++.+|.. .+||+|++.+|..+++.|++|+++||||| +++
T Consensus 10 ~~~~~~~l~~~l~~~~~~~iif~~~~~~~~~l~~~l~~------~~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~~v~ 83 (248)
T d1gkub2 10 NDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKN------KFRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTL 83 (248)
T ss_dssp SCCCTTTTHHHHTTSCSCEEEEESSHHHHHHHHHTTTT------SSCEEECTTSSSHHHHHHHHTSCSEEEEECC-----
T ss_pred CchHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH------hccCCCCHHHHHHHHHHHHhCCCeEEEEeccccchh
Confidence 46677788888887788999999999999999999974 38999999999999999999999999999 899
Q ss_pred hccCCCCC-CcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhh
Q psy16310 605 ARGLDIPG-IEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNL 661 (1493)
Q Consensus 605 ~rGlDip~-v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~ 661 (1493)
+||||+|+ |++|||||+|. |+||+|||||+|+.|.+++++...+......+..
T Consensus 84 ~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~~~~~~~~~~~~~~~~~l~~ 137 (248)
T d1gkub2 84 VRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLP 137 (248)
T ss_dssp -CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCT
T ss_pred hhccCccccccEEEEeCCCc----chhhhhhhhccCcceEeeeeccHhhHHHHHHHHH
Confidence 99999996 99999999995 8899999999999999999998888777666543
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=5.6e-16 Score=165.34 Aligned_cols=171 Identities=18% Similarity=0.139 Sum_probs=131.8
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhc---c--CCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcc
Q psy16310 773 FNIPETIIRALYQKGFKTPTKIQSMVMPSALL---A--RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSG 847 (1493)
Q Consensus 773 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~---~--~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 847 (1493)
+..+....+.+.+.-...+|+-|..++..+.. . ..+.+++|.||||||.+|+..++..+
T Consensus 38 ~~~~~~~~~~~~~~lP~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~---------------- 101 (233)
T d2eyqa3 38 FKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV---------------- 101 (233)
T ss_dssp CCCCHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH----------------
T ss_pred CCCCHHHHHhhhhccccccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHH----------------
Confidence 44567777888777777899999999975542 2 24889999999999999999998766
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH----Hh
Q psy16310 848 LEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR----IL 923 (1493)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~----~l 923 (1493)
..+.++++|+||..|+.|+++.|+.++..+++++..++|+.+...... ..
T Consensus 102 --------------------------~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~ 155 (233)
T d2eyqa3 102 --------------------------DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVA 155 (233)
T ss_dssp --------------------------TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHH
T ss_pred --------------------------HcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHh
Confidence 345689999999999999999999999899999999999998765433 33
Q ss_pred cCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccch
Q psy16310 924 NKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHSL 1003 (1493)
Q Consensus 924 ~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~~ 1003 (1493)
...++|+|||.-.+.+. ..|.++++||+||-|+..- .+- ..+... ..+..++++|||+.+..
T Consensus 156 ~g~~~iviGths~l~~~--------~~f~~LgLiIiDEeH~fg~----kQ~-~~l~~~-----~~~~~~l~~SATPiprt 217 (233)
T d2eyqa3 156 EGKIDILIGTHKLLQSD--------VKFKDLGLLIVDEEHRFGV----RHK-ERIKAM-----RANVDILTLTATPIPRT 217 (233)
T ss_dssp TTCCSEEEECTHHHHSC--------CCCSSEEEEEEESGGGSCH----HHH-HHHHHH-----HTTSEEEEEESSCCCHH
T ss_pred CCCCCEEEeehhhhccC--------Cccccccceeeechhhhhh----HHH-HHHHhh-----CCCCCEEEEecchhHHH
Confidence 45679999998776321 2367899999999998422 222 223222 14578999999987544
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.68 E-value=5.8e-18 Score=182.49 Aligned_cols=106 Identities=16% Similarity=0.233 Sum_probs=94.4
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHH----------HHHHHHHhcCCCCeEEeehhhhc---ccc
Q psy16310 1076 HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR----------LKNLDRFRDQNNSILLATDVAAR---GLD 1142 (1493)
Q Consensus 1076 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R----------~~~~~~F~~g~~~VLVaTdv~~~---GiD 1142 (1493)
.++++||||+|+..|+.|+..|+..|+++..+||+|++..| ..+++.|+.|+.++||+|+++++ |+|
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giD 114 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFS 114 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEEEEEEECC
T ss_pred cCCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCcEEEEEeehhccCCCCC
Confidence 36899999999999999999999999999999999999887 46788999999999999999999 677
Q ss_pred CCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEec
Q psy16310 1143 IPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIE 1182 (1493)
Q Consensus 1143 ip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~ 1182 (1493)
++.+.+||+|++|.|.++|+||+||||| |+.|...+++.
T Consensus 115 id~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G~~~~l~~ 153 (299)
T d1a1va2 115 LDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAP 153 (299)
T ss_dssp CSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEEEEESCS
T ss_pred CCcceEEEeCCCCCCHHHHHhhccccCC-CCCceEEEEec
Confidence 8888899999999999999999999999 99998776543
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.67 E-value=8.6e-18 Score=181.11 Aligned_cols=107 Identities=16% Similarity=0.239 Sum_probs=95.3
Q ss_pred CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHH----------HHHHHHHhcCCCeEEEEechhhc---cCCC
Q psy16310 544 PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQR----------LKNLDRFRDQNNSILLATDVAAR---GLDI 610 (1493)
Q Consensus 544 ~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R----------~~vl~~Fr~g~~~VLVaTdv~~r---GlDi 610 (1493)
++++||||+|+..|+.|+..|+..|+.+..+||+|++..| ..+++.|+.|+.++||+|+++++ |+|+
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giDi 115 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSL 115 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEEEEEEECCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCcEEEEEeehhccCCCCCC
Confidence 5799999999999999999999999999999999999887 56889999999999999999998 6788
Q ss_pred CCCcEEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCC
Q psy16310 611 PGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESD 651 (1493)
Q Consensus 611 p~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~ 651 (1493)
+.|.+||+||+|.|+.+|+||+||||| |++|...++....
T Consensus 116 d~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G~~~~l~~~t 155 (299)
T d1a1va2 116 DPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPGE 155 (299)
T ss_dssp SSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEEEEESCSCC
T ss_pred CcceEEEeCCCCCCHHHHHhhccccCC-CCCceEEEEecCC
Confidence 888999999999999999999999999 8899877665443
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.67 E-value=9.5e-18 Score=175.92 Aligned_cols=131 Identities=16% Similarity=0.278 Sum_probs=98.4
Q ss_pred hhhHHHHHHhh---CCCcEEEEecchhhHHH--------HHHHHHh-c--CCCccccccCCCHHHHHHHHHHHhcCCCeE
Q psy16310 532 KDSYLYYFILQ---HPGRTLVFCNSISSVKR--------LTQLLTM-L--KCSPLPLHASMNQRQRLKNLDRFRDQNNSI 597 (1493)
Q Consensus 532 k~~~l~~~l~~---~~~~~IIF~~s~~~a~~--------L~~~L~~-~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~V 597 (1493)
+...+..++.. .++++.+.||..+..+. ....|.. . ++.+..+||.|++.+|..++..|++|+++|
T Consensus 14 ~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~i 93 (206)
T d1gm5a4 14 RVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDI 93 (206)
T ss_dssp THHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSB
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEEE
Confidence 33344444433 45788888887654432 3333322 2 567889999999999999999999999999
Q ss_pred EEEechhhccCCCCCCcEEEEecCCC-ChHHHHHHHhccccCCCCCeEEEEecCCcchhhhhhhhh
Q psy16310 598 LLATDVAARGLDIPGIEHVIHYHVPR-TSEIYIHRSGRTARANNEGLTVVLIESDEIPLKTKFNLQ 662 (1493)
Q Consensus 598 LVaTdv~~rGlDip~v~~VI~yd~P~-s~~~yiQR~GRagR~g~~G~~i~l~~~~e~~~~~~l~~~ 662 (1493)
||||+|+++|||+|++++||+|++|. ....|.|.+||+||.|..|+|++++++........+...
T Consensus 94 LVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~~~~~~~~~rl~~~ 159 (206)
T d1gm5a4 94 LVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLRFF 159 (206)
T ss_dssp CCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHHHHH
T ss_pred EEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeEeeeccccccchhhhhhc
Confidence 99999999999999999999999998 566677779999999999999999987655444444333
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=1.9e-15 Score=164.36 Aligned_cols=164 Identities=20% Similarity=0.218 Sum_probs=121.0
Q ss_pred HHHHHH-HHCCCCCCcHHHHhhHHHhhc-----cCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHH
Q psy16310 778 TIIRAL-YQKGFKTPTKIQSMVMPSALL-----ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEE 851 (1493)
Q Consensus 778 ~l~~~l-~~~g~~~pt~iQ~~~i~~~l~-----~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 851 (1493)
.+.+.+ ..+.| .+|+-|.+|+..+.. ...+.+++|.||||||.+|+..++..+..
T Consensus 71 ~l~~~f~~~LPF-eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~------------------ 131 (264)
T d1gm5a3 71 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------------------ 131 (264)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHhhccc-cCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhc------------------
Confidence 344443 44555 799999999986542 23478999999999999999999877743
Q ss_pred HHHHHHHHHHhhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHH----hcCCC
Q psy16310 852 AEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI----LNKCP 927 (1493)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~----l~~~~ 927 (1493)
+.++++++||..||.|+++.++.++..+++.+..++|+.+..+.... ....+
T Consensus 132 ------------------------g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~ 187 (264)
T d1gm5a3 132 ------------------------GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQI 187 (264)
T ss_dssp ------------------------TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCC
T ss_pred ------------------------ccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCC
Confidence 34699999999999999999999999999999999999987654332 23568
Q ss_pred cEEEECcHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 928 HILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 928 ~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
+|+|||..-+.+- ..|.+++++|+||-|+..-... . .+ .......+++++|||+.+.
T Consensus 188 ~iiIGThsl~~~~--------~~f~~LglviiDEqH~fgv~Qr-----~---~l--~~~~~~~~~l~~SATPipr 244 (264)
T d1gm5a3 188 DVVIGTHALIQED--------VHFKNLGLVIIDEQHRFGVKQR-----E---AL--MNKGKMVDTLVMSATPIPR 244 (264)
T ss_dssp CEEEECTTHHHHC--------CCCSCCCEEEEESCCCC----------C---CC--CSSSSCCCEEEEESSCCCH
T ss_pred CEEEeehHHhcCC--------CCccccceeeeccccccchhhH-----H---HH--HHhCcCCCEEEEECCCCHH
Confidence 9999998765321 1356899999999998643221 0 11 1123457899999997644
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.59 E-value=4.2e-16 Score=166.43 Aligned_cols=108 Identities=19% Similarity=0.310 Sum_probs=97.8
Q ss_pred cchhhHHHHHHHhC-CCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccc
Q psy16310 1063 DEKDSYLYYFILQH-PGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGL 1141 (1493)
Q Consensus 1063 ~~k~~~l~~~l~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~Gi 1141 (1493)
..|...+..++..+ +.++||||+++..++.|+..| .+..+||++++.+|..+++.|++|+++|||||+++++|+
T Consensus 78 ~~K~~~l~~ll~~~~~~k~lvf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~~~~~~~Gi 152 (200)
T d2fwra1 78 KNKIRKLREILERHRKDKIIIFTRHNELVYRISKVF-----LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGI 152 (200)
T ss_dssp SHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHT-----TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSS
T ss_pred HHHHHHHHHHHHhCCCCcEEEEeCcHHHHHHHHhhc-----CcceeeCCCCHHHHHHHHHHhhcCCeeeeeecchhhccc
Confidence 45777788888776 458999999999999998876 455689999999999999999999999999999999999
Q ss_pred cCCCccEEEEecCCCChhHHHHHHhccCCCCCCC
Q psy16310 1142 DIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG 1175 (1493)
Q Consensus 1142 Dip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G 1175 (1493)
|+|.+++||++++|.++..|+||+||++|.|..+
T Consensus 153 dl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k 186 (200)
T d2fwra1 153 DVPDANVGVIMSGSGSAREYIQRLGRILRPSKGK 186 (200)
T ss_dssp CSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTT
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCC
Confidence 9999999999999999999999999999998643
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.59 E-value=3.9e-16 Score=166.74 Aligned_cols=117 Identities=19% Similarity=0.301 Sum_probs=102.2
Q ss_pred cCchhhHHHHHHhhCC-CcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhcc
Q psy16310 529 HDEKDSYLYYFILQHP-GRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARG 607 (1493)
Q Consensus 529 ~~~k~~~l~~~l~~~~-~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rG 607 (1493)
.+.|...|..++..+. .++||||++...++.|++.| .+..+||++++.+|..+++.|++|+++|||||+++++|
T Consensus 77 ~~~K~~~l~~ll~~~~~~k~lvf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~~~~~~~G 151 (200)
T d2fwra1 77 SKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVF-----LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEG 151 (200)
T ss_dssp CSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHT-----TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSS
T ss_pred cHHHHHHHHHHHHhCCCCcEEEEeCcHHHHHHHHhhc-----CcceeeCCCCHHHHHHHHHHhhcCCeeeeeecchhhcc
Confidence 4567788888887764 59999999999999998876 35568999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecCCCChHHHHHHHhccccCCCCC---eEEEEecC
Q psy16310 608 LDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG---LTVVLIES 650 (1493)
Q Consensus 608 lDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G---~~i~l~~~ 650 (1493)
+|+|.+++||+|++|.|+..|+||+||++|.|..+ ..+.|+..
T Consensus 152 idl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~ 197 (200)
T d2fwra1 152 IDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 197 (200)
T ss_dssp SCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEecC
Confidence 99999999999999999999999999999998643 44445543
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=4.8e-15 Score=152.80 Aligned_cols=109 Identities=18% Similarity=0.321 Sum_probs=101.5
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhc--CCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEEec
Q psy16310 543 HPGRTLVFCNSISSVKRLTQLLTML--KCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIHYH 620 (1493)
Q Consensus 543 ~~~~~IIF~~s~~~a~~L~~~L~~~--~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~yd 620 (1493)
.++++.+.||..++.+.+...+... +..+..+||.|+..++..++..|++|+++|||||.+.+.|||+|+++++|.++
T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIEvGiDvpnA~~iiI~~ 109 (211)
T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 109 (211)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETT
T ss_pred cCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhhhhccCCCCCcEEEEec
Confidence 5789999999999999999888765 67889999999999999999999999999999999999999999999999999
Q ss_pred CCC-ChHHHHHHHhccccCCCCCeEEEEecCC
Q psy16310 621 VPR-TSEIYIHRSGRTARANNEGLTVVLIESD 651 (1493)
Q Consensus 621 ~P~-s~~~yiQR~GRagR~g~~G~~i~l~~~~ 651 (1493)
... ....+.|..||+||.+..|+|++++.+.
T Consensus 110 a~rfGLaQLhQLRGRVGR~~~~s~c~l~~~~~ 141 (211)
T d2eyqa5 110 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 141 (211)
T ss_dssp TTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred chhccccccccccceeeecCccceEEEEecCC
Confidence 986 7888999999999999999999999664
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=9.8e-14 Score=147.80 Aligned_cols=142 Identities=20% Similarity=0.167 Sum_probs=110.7
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHhhhhhhh---cc--CCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccc
Q psy16310 157 NIPETIIRALYQKGFKTPTKIQSMVMPSAL---LA--RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 231 (1493)
Q Consensus 157 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l---~~--~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 231 (1493)
..+....+.+.+.-.-.+|+-|..++..+. .. ..+.+++|.||||||.+|+..+...+
T Consensus 39 ~~~~~~~~~~~~~lP~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~----------------- 101 (233)
T d2eyqa3 39 KHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV----------------- 101 (233)
T ss_dssp CCCHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH-----------------
T ss_pred CCCHHHHHhhhhccccccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHH-----------------
Confidence 345566666655444479999999986443 22 34789999999999999999888766
Q ss_pred hHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHH---Hh-c
Q psy16310 232 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---IL-N 307 (1493)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~---~l-~ 307 (1493)
..+.++++|+||..|+.|.++.|+.+...+++++.+++|..+...... .+ .
T Consensus 102 -------------------------~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~ 156 (233)
T d2eyqa3 102 -------------------------DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE 156 (233)
T ss_dssp -------------------------TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHT
T ss_pred -------------------------HcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhC
Confidence 345689999999999999999999999889999999999988665433 33 4
Q ss_pred CCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCchh
Q psy16310 308 KCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRM 348 (1493)
Q Consensus 308 ~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~l 348 (1493)
+.++|||+|-..+.+ .. .+.++.+|||||-|+.
T Consensus 157 g~~~iviGths~l~~-----~~---~f~~LgLiIiDEeH~f 189 (233)
T d2eyqa3 157 GKIDILIGTHKLLQS-----DV---KFKDLGLLIVDEEHRF 189 (233)
T ss_dssp TCCSEEEECTHHHHS-----CC---CCSSEEEEEEESGGGS
T ss_pred CCCCEEEeehhhhcc-----CC---ccccccceeeechhhh
Confidence 457999999887732 22 2558999999999965
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=1.9e-14 Score=156.38 Aligned_cols=137 Identities=20% Similarity=0.244 Sum_probs=108.1
Q ss_pred HHHHHHHCCCCCChHHHHhhhhhhhc-----cCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHH
Q psy16310 162 IIRALYQKGFKTPTKIQSMVMPSALL-----ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAE 236 (1493)
Q Consensus 162 l~~~l~~~g~~~pt~iQ~~~i~~~l~-----~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (1493)
....+..+.| .+|+-|..++..+.. ...+.+++|.||||||.+|+..++..+.+
T Consensus 73 ~~~f~~~LPF-eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~-------------------- 131 (264)
T d1gm5a3 73 AEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-------------------- 131 (264)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHhhccc-cCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhc--------------------
Confidence 3344566677 699999999975542 23478999999999999999998877643
Q ss_pred HHHHHHHHhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHH---h-cCCCCE
Q psy16310 237 EVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRI---L-NKCPHI 312 (1493)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~---l-~~~~~I 312 (1493)
+.+|++|+||..||.|.++.+..+....++.+..++|+.+....... + .+.++|
T Consensus 132 ----------------------g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~i 189 (264)
T d1gm5a3 132 ----------------------GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDV 189 (264)
T ss_dssp ----------------------TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCE
T ss_pred ----------------------ccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCE
Confidence 35699999999999999999999999899999999999887654332 2 356899
Q ss_pred EEeCcHHHHHHHHcCCccccccccccEEEEecCchhh
Q psy16310 313 LVATPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 349 (1493)
Q Consensus 313 iV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll 349 (1493)
||||-..+.+ .. .+.+++++||||-|+..
T Consensus 190 iIGThsl~~~-----~~---~f~~LglviiDEqH~fg 218 (264)
T d1gm5a3 190 VIGTHALIQE-----DV---HFKNLGLVIIDEQHRFG 218 (264)
T ss_dssp EEECTTHHHH-----CC---CCSCCCEEEEESCCCC-
T ss_pred EEeehHHhcC-----CC---Cccccceeeeccccccc
Confidence 9999877632 12 24578999999999773
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.54 E-value=2.8e-15 Score=167.89 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=109.5
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.|+++|.+++..++.. +..++.+|||+|||+++...+. .+..
T Consensus 113 ~~rdyQ~~av~~~l~~-~~~il~~pTGsGKT~i~~~i~~-~~~~------------------------------------ 154 (282)
T d1rifa_ 113 EPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLAR-YYLE------------------------------------ 154 (282)
T ss_dssp CCCHHHHHHHHHHHHH-SEEEECCCTTSCHHHHHHHHHH-HHHH------------------------------------
T ss_pred ccchHHHHHHHHHHhc-CCceeEEEcccCccHHHHHHHH-Hhhh------------------------------------
Confidence 6999999999987754 5788999999999998655443 2221
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccc
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~ 949 (1493)
....++|||||+++|+.|+++.|..++......+..+.+|...... .....+|+|+|++.+.... ..
T Consensus 155 ----~~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~i~i~t~qs~~~~~------~~ 221 (282)
T d1rifa_ 155 ----NYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQP------KE 221 (282)
T ss_dssp ----HCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTTC---CCTTCSEEEECHHHHTTSC------GG
T ss_pred ----cccceEEEEEcCchhHHHHHHHHHHhhccccccceeecceeccccc---ccccceEEEEeeehhhhhc------cc
Confidence 1224799999999999999999999876666667777776542211 1124589999998764322 12
Q ss_pred cccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 950 ~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
.+.++++||+||||++.. ..+..++..+. .....++||||++..
T Consensus 222 ~~~~f~~VIvDEaH~~~a----~~~~~il~~~~-----~~~~rlGlTaT~~~~ 265 (282)
T d1rifa_ 222 WFSQFGMMMNDECHLATG----KSISSIISGLN-----NCMFKFGLSGSLRDG 265 (282)
T ss_dssp GGGGEEEEEEETGGGCCH----HHHHHHTTTCT-----TCCEEEEECSSCCTT
T ss_pred ccCCCCEEEEECCCCCCc----hhHHHHHHhcc-----CCCeEEEEEeecCCC
Confidence 356789999999998643 45566665542 223458999999754
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.52 E-value=1.2e-14 Score=162.55 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=96.4
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.|+++|.+++..++. ++..++++|||+|||+++.+.+. .+..
T Consensus 113 ~~rdyQ~~av~~~l~-~~~~il~~pTGsGKT~i~~~i~~-~~~~------------------------------------ 154 (282)
T d1rifa_ 113 EPHWYQKDAVFEGLV-NRRRILNLPTSAGRSLIQALLAR-YYLE------------------------------------ 154 (282)
T ss_dssp CCCHHHHHHHHHHHH-HSEEEECCCTTSCHHHHHHHHHH-HHHH------------------------------------
T ss_pred ccchHHHHHHHHHHh-cCCceeEEEcccCccHHHHHHHH-Hhhh------------------------------------
Confidence 599999999987775 45788899999999998765443 2221
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcccc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~ 332 (1493)
....++|||||+++|+.|+++.|..++......+..+.+|...... .....+|+|+|++.+.... ..
T Consensus 155 ----~~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~i~i~t~qs~~~~~------~~ 221 (282)
T d1rifa_ 155 ----NYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQP------KE 221 (282)
T ss_dssp ----HCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTTC---CCTTCSEEEECHHHHTTSC------GG
T ss_pred ----cccceEEEEEcCchhHHHHHHHHHHhhccccccceeecceeccccc---ccccceEEEEeeehhhhhc------cc
Confidence 1234799999999999999999999876655666666666442221 1234589999998874321 12
Q ss_pred ccccccEEEEecCchhhhcCChhhHHHHHHh
Q psy16310 333 ELYKINYLVIDETDRMIESGHFPELKNILDR 363 (1493)
Q Consensus 333 ~l~~i~~lViDEAh~ll~~~~~~~l~~il~~ 363 (1493)
.+.++++||+||||++. .+.+..++..
T Consensus 222 ~~~~f~~VIvDEaH~~~----a~~~~~il~~ 248 (282)
T d1rifa_ 222 WFSQFGMMMNDECHLAT----GKSISSIISG 248 (282)
T ss_dssp GGGGEEEEEEETGGGCC----HHHHHHHTTT
T ss_pred ccCCCCEEEEECCCCCC----chhHHHHHHh
Confidence 34578999999999874 3344555543
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.49 E-value=4.1e-14 Score=151.20 Aligned_cols=136 Identities=21% Similarity=0.142 Sum_probs=97.6
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.|+|+|.+++..++ .++..++++|||+|||++++..+ ..+
T Consensus 70 ~Lr~yQ~eav~~~~-~~~~~ll~~~tG~GKT~~a~~~~-~~~-------------------------------------- 109 (206)
T d2fz4a1 70 SLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAI-NEL-------------------------------------- 109 (206)
T ss_dssp CCCHHHHHHHHHHT-TTSEEEEEESSSTTHHHHHHHHH-HHS--------------------------------------
T ss_pred CcCHHHHHHHHHHH-hCCCcEEEeCCCCCceehHHhHH-HHh--------------------------------------
Confidence 68999999998655 55678899999999998865433 211
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccc
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 949 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~ 949 (1493)
+.++|||||+++|+.|+.+.+..++. ..+....|+. ....+|+|+|...+......
T Consensus 110 ------~~~~Liv~p~~~L~~q~~~~~~~~~~---~~~~~~~~~~---------~~~~~i~i~t~~~~~~~~~~------ 165 (206)
T d2fz4a1 110 ------STPTLIVVPTLALAEQWKERLGIFGE---EYVGEFSGRI---------KELKPLTVSTYDSAYVNAEK------ 165 (206)
T ss_dssp ------CSCEEEEESSHHHHHHHHHHHGGGCG---GGEEEESSSC---------BCCCSEEEEEHHHHHHTHHH------
T ss_pred ------cCceeEEEcccchHHHHHHHHHhhcc---cchhhccccc---------ccccccccceehhhhhhhHh------
Confidence 12589999999999999999987642 3344444432 23457999999887655432
Q ss_pred cccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEeccc
Q psy16310 950 ELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999 (1493)
Q Consensus 950 ~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl 999 (1493)
.+.++++||+||||++.. ..+..++..+ .....+++|||+
T Consensus 166 ~~~~~~lvIiDEaH~~~a----~~~~~i~~~~------~~~~~lgLTATl 205 (206)
T d2fz4a1 166 LGNRFMLLIFDEVHHLPA----ESYVQIAQMS------IAPFRLGLTATF 205 (206)
T ss_dssp HTTTCSEEEEECSSCCCT----TTHHHHHHTC------CCSEEEEEEESC
T ss_pred hCCcCCEEEEECCeeCCc----HHHHHHHhcc------CCCcEEEEecCC
Confidence 134678999999999753 3455566544 334678999998
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.49 E-value=1.2e-14 Score=145.62 Aligned_cols=110 Identities=21% Similarity=0.150 Sum_probs=76.2
Q ss_pred hhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEE
Q psy16310 185 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 264 (1493)
Q Consensus 185 ~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLi 264 (1493)
.|..|++++++||||||||.+++..++..... .+.+++|
T Consensus 3 ~l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~-----------------------------------------~~~~vli 41 (140)
T d1yksa1 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-----------------------------------------RRLRTLV 41 (140)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------------------------------------TTCCEEE
T ss_pred HHHcCCcEEEEcCCCCChhHHHHHHHHHHhhh-----------------------------------------cCceeee
Confidence 46678999999999999999887666655432 3457999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEec
Q psy16310 265 LAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 344 (1493)
Q Consensus 265 L~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDE 344 (1493)
++|+++|+.|+++.+... +..+....+.... .....+.++|...+....... ..+.++++|||||
T Consensus 42 ~~p~~~l~~q~~~~~~~~----~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~----~~~~~~~lvIiDE 106 (140)
T d1yksa1 42 LAPTRVVLSEMKEAFHGL----DVKFHTQAFSAHG-------SGREVIDAMCHATLTYRMLEP----TRVVNWEVIIMDE 106 (140)
T ss_dssp EESSHHHHHHHHHHTTTS----CEEEESSCCCCCC-------CSSCCEEEEEHHHHHHHHTSS----SCCCCCSEEEETT
T ss_pred eecchhHHHHHHHHhhhh----hhhhccccccccc-------ccccchhhhhHHHHHHHHhcc----ccccceeEEEEcc
Confidence 999999999998876432 3333222221111 123468888888876654432 2355899999999
Q ss_pred Cchhhh
Q psy16310 345 TDRMIE 350 (1493)
Q Consensus 345 Ah~ll~ 350 (1493)
||++..
T Consensus 107 aH~~~~ 112 (140)
T d1yksa1 107 AHFLDP 112 (140)
T ss_dssp TTCCSH
T ss_pred ccccCh
Confidence 998743
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.48 E-value=1e-14 Score=146.09 Aligned_cols=138 Identities=19% Similarity=0.136 Sum_probs=90.7
Q ss_pred hhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEE
Q psy16310 802 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALI 881 (1493)
Q Consensus 802 ~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 881 (1493)
.+..|++++++||||||||.+++..++..... .+.+++|
T Consensus 3 ~l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~-----------------------------------------~~~~vli 41 (140)
T d1yksa1 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-----------------------------------------RRLRTLV 41 (140)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------------------------------------TTCCEEE
T ss_pred HHHcCCcEEEEcCCCCChhHHHHHHHHHHhhh-----------------------------------------cCceeee
Confidence 46788999999999999999887666654422 2357999
Q ss_pred EcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecc
Q psy16310 882 LAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDE 961 (1493)
Q Consensus 882 l~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDE 961 (1493)
++|+++|+.|+++.+... ...+....+.... .....+.+.|...+...... ...+.++++||+||
T Consensus 42 ~~p~~~l~~q~~~~~~~~----~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~----~~~~~~~~lvIiDE 106 (140)
T d1yksa1 42 LAPTRVVLSEMKEAFHGL----DVKFHTQAFSAHG-------SGREVIDAMCHATLTYRMLE----PTRVVNWEVIIMDE 106 (140)
T ss_dssp EESSHHHHHHHHHHTTTS----CEEEESSCCCCCC-------CSSCCEEEEEHHHHHHHHTS----SSCCCCCSEEEETT
T ss_pred eecchhHHHHHHHHhhhh----hhhhccccccccc-------ccccchhhhhHHHHHHHHhc----cccccceeEEEEcc
Confidence 999999999998876432 2332221111100 12346788888777654432 23466889999999
Q ss_pred cchhccCCChhHHHHHHHHhcccCCCCCceEEEEecccc
Q psy16310 962 TDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLT 1000 (1493)
Q Consensus 962 ah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~ 1000 (1493)
||++...++ ....++..+.. ..+.+++++|||+|
T Consensus 107 aH~~~~~~~--~~~~~~~~~~~---~~~~~~l~lTATPp 140 (140)
T d1yksa1 107 AHFLDPASI--AARGWAAHRAR---ANESATILMTATPP 140 (140)
T ss_dssp TTCCSHHHH--HHHHHHHHHHH---TTSCEEEEECSSCT
T ss_pred ccccChhhH--HHHHHHHHHhh---CCCCCEEEEEcCCC
Confidence 998744332 22233333321 25689999999997
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.47 E-value=4.4e-14 Score=151.01 Aligned_cols=123 Identities=21% Similarity=0.135 Sum_probs=87.7
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.|+++|.+++..++ .++..++++|||+|||++++..+. .+
T Consensus 70 ~Lr~yQ~eav~~~~-~~~~~ll~~~tG~GKT~~a~~~~~-~~-------------------------------------- 109 (206)
T d2fz4a1 70 SLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAIN-EL-------------------------------------- 109 (206)
T ss_dssp CCCHHHHHHHHHHT-TTSEEEEEESSSTTHHHHHHHHHH-HS--------------------------------------
T ss_pred CcCHHHHHHHHHHH-hCCCcEEEeCCCCCceehHHhHHH-Hh--------------------------------------
Confidence 59999999998554 566788999999999998654332 11
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCcccc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLT 332 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~ 332 (1493)
+.++|||||+++|+.|+.+.+..++. ..+....|+. .....|+|+|...+......-
T Consensus 110 ------~~~~Liv~p~~~L~~q~~~~~~~~~~---~~~~~~~~~~---------~~~~~i~i~t~~~~~~~~~~~----- 166 (206)
T d2fz4a1 110 ------STPTLIVVPTLALAEQWKERLGIFGE---EYVGEFSGRI---------KELKPLTVSTYDSAYVNAEKL----- 166 (206)
T ss_dssp ------CSCEEEEESSHHHHHHHHHHHGGGCG---GGEEEESSSC---------BCCCSEEEEEHHHHHHTHHHH-----
T ss_pred ------cCceeEEEcccchHHHHHHHHHhhcc---cchhhccccc---------ccccccccceehhhhhhhHhh-----
Confidence 23589999999999999999987642 3344455543 233479999999886654321
Q ss_pred ccccccEEEEecCchhhhcCChhhHHHHHHh
Q psy16310 333 ELYKINYLVIDETDRMIESGHFPELKNILDR 363 (1493)
Q Consensus 333 ~l~~i~~lViDEAh~ll~~~~~~~l~~il~~ 363 (1493)
..++++||+||||++.. +.+..++..
T Consensus 167 -~~~~~lvIiDEaH~~~a----~~~~~i~~~ 192 (206)
T d2fz4a1 167 -GNRFMLLIFDEVHHLPA----ESYVQIAQM 192 (206)
T ss_dssp -TTTCSEEEEECSSCCCT----TTHHHHHHT
T ss_pred -CCcCCEEEEECCeeCCc----HHHHHHHhc
Confidence 23578999999998742 334555543
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.40 E-value=1.5e-13 Score=136.50 Aligned_cols=131 Identities=17% Similarity=0.107 Sum_probs=85.7
Q ss_pred ccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhhhccCCCeEEEEEc
Q psy16310 804 LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 883 (1493)
Q Consensus 804 ~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 883 (1493)
...+..++.||||||||+.+...+. ..+.+++|++
T Consensus 6 ~~~~~~ll~apTGsGKT~~~~~~~~---------------------------------------------~~~~~vli~~ 40 (136)
T d1a1va1 6 QSFQVAHLHAPTGSGKSTKVPAAYA---------------------------------------------AQGYKVLVLN 40 (136)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHHH---------------------------------------------TTTCCEEEEE
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHHH---------------------------------------------HcCCcEEEEc
Confidence 3556789999999999976533221 1234699999
Q ss_pred ccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcCccccccceeEEEecccc
Q psy16310 884 PTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETD 963 (1493)
Q Consensus 884 PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~~~~~l~~l~~lVlDEah 963 (1493)
||++|+.|+.+.+...... ......+|... .....++++|.+.+..... ..+.++++||+||||
T Consensus 41 P~~~l~~q~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~------~~~~~~~~vIiDE~H 104 (136)
T d1a1va1 41 PSVAATLGFGAYMSKAHGV---DPNIRTGVRTI-------TTGSPITYSTYGKFLADGG------CSGGAYDIIICDECH 104 (136)
T ss_dssp SCHHHHHHHHHHHHHHHSC---CCEEECSSCEE-------CCCCSEEEEEHHHHHHTTG------GGGCCCSEEEEETTT
T ss_pred ChHHHHHHHHHHHHHHhhc---ccccccccccc-------ccccceEEEeeeeeccccc------hhhhcCCEEEEeccc
Confidence 9999999999999886533 22333333211 1234688999887643321 346688999999999
Q ss_pred hhccCCChhHHHHHHHHhcccCCCCCceEEEEeccc
Q psy16310 964 RMIESGHFPELKNILDRVTMTETSQPRQTFVFSATL 999 (1493)
Q Consensus 964 ~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl 999 (1493)
++... ....+..+++.+. ......++++|||+
T Consensus 105 ~~~~~-~~~~~~~~l~~~~---~~~~~~~l~~TATP 136 (136)
T d1a1va1 105 STDAT-SILGIGTVLDQAE---TAGARLVVLATATP 136 (136)
T ss_dssp CCSHH-HHHHHHHHHHHTT---TTTCSEEEEEESSC
T ss_pred ccCHH-HHHHHHHHHHHHH---HCCCCcEEEEeCCC
Confidence 86332 1123444455442 23567899999996
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.37 E-value=2.3e-13 Score=135.23 Aligned_cols=101 Identities=16% Similarity=0.070 Sum_probs=70.0
Q ss_pred ccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhhhhcccCceEEEEEc
Q psy16310 187 LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 266 (1493)
Q Consensus 187 ~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aLiL~ 266 (1493)
.+.+..++.||||||||+++...++ ..+.+++|++
T Consensus 6 ~~~~~~ll~apTGsGKT~~~~~~~~---------------------------------------------~~~~~vli~~ 40 (136)
T d1a1va1 6 QSFQVAHLHAPTGSGKSTKVPAAYA---------------------------------------------AQGYKVLVLN 40 (136)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHHH---------------------------------------------TTTCCEEEEE
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHHH---------------------------------------------HcCCcEEEEc
Confidence 3466789999999999987533222 1234699999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCccccccccccEEEEecCc
Q psy16310 267 PTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHFHLTELYKINYLVIDETD 346 (1493)
Q Consensus 267 PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh 346 (1493)
||++|+.|+.+.+...... ......++... .....++++|.+.+..... ..+.++++|||||||
T Consensus 41 P~~~l~~q~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~------~~~~~~~~vIiDE~H 104 (136)
T d1a1va1 41 PSVAATLGFGAYMSKAHGV---DPNIRTGVRTI-------TTGSPITYSTYGKFLADGG------CSGGAYDIIICDECH 104 (136)
T ss_dssp SCHHHHHHHHHHHHHHHSC---CCEEECSSCEE-------CCCCSEEEEEHHHHHHTTG------GGGCCCSEEEEETTT
T ss_pred ChHHHHHHHHHHHHHHhhc---ccccccccccc-------ccccceEEEeeeeeccccc------hhhhcCCEEEEeccc
Confidence 9999999999998876532 23333333221 1224799999988754322 235588999999999
Q ss_pred hh
Q psy16310 347 RM 348 (1493)
Q Consensus 347 ~l 348 (1493)
++
T Consensus 105 ~~ 106 (136)
T d1a1va1 105 ST 106 (136)
T ss_dssp CC
T ss_pred cc
Confidence 76
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.27 E-value=4e-12 Score=140.73 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=86.1
Q ss_pred HHHHhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehhhhccccCCCccEEE
Q psy16310 1071 YFILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVI 1150 (1493)
Q Consensus 1071 ~~l~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv~~~GiDip~v~~VI 1150 (1493)
..+...+++++|||+++..+..++..|...|..+..+||.+...++. +|++|+.+|||||+++++|+|+ +|.+||
T Consensus 30 ~~i~~~~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~----~~~~~~~~~~~~t~~~~~~~~~-~~~~vi 104 (299)
T d1yksa2 30 DWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQKKPDFILATDIAEMGANL-CVERVL 104 (299)
T ss_dssp HHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CCCSEEEESSSTTCCTTC-CCSEEE
T ss_pred HHHHhcCCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHh----hhhcCCcCEEEEechhhhceec-CceEEE
Confidence 34556789999999999999999999999999999999999977754 5789999999999999999999 699999
Q ss_pred EecC-------------------CCChhHHHHHHhccCCCCCCCeEEEEec
Q psy16310 1151 HYHV-------------------PRTSEIYIHRSGRTARANNEGLTLVLIE 1182 (1493)
Q Consensus 1151 ~~d~-------------------p~s~~~yiqr~GR~gR~g~~G~~i~l~~ 1182 (1493)
+.++ |.+..+-.||.||+||.+....++.++.
T Consensus 105 d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~ 155 (299)
T d1yksa2 105 DCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 155 (299)
T ss_dssp ECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ecCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEEeC
Confidence 6543 2467888999999999976666666654
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.27 E-value=4.8e-12 Score=140.06 Aligned_cols=108 Identities=21% Similarity=0.262 Sum_probs=86.7
Q ss_pred HHhhCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEechhhccCCCCCCcEEEE
Q psy16310 539 FILQHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDVAARGLDIPGIEHVIH 618 (1493)
Q Consensus 539 ~l~~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTdv~~rGlDip~v~~VI~ 618 (1493)
++...+++++|||++..++..++..|...|..+..+||.+...++. .|++|+.+|||||+++++|+|+ +|.+||+
T Consensus 31 ~i~~~~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~----~~~~~~~~~~~~t~~~~~~~~~-~~~~vid 105 (299)
T d1yksa2 31 WILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQKKPDFILATDIAEMGANL-CVERVLD 105 (299)
T ss_dssp HHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CCCSEEEESSSTTCCTTC-CCSEEEE
T ss_pred HHHhcCCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHh----hhhcCCcCEEEEechhhhceec-CceEEEe
Confidence 4456789999999999999999999999999999999999887754 5789999999999999999999 5999996
Q ss_pred ecC-------------------CCChHHHHHHHhccccCCCCCeEEEEecCC
Q psy16310 619 YHV-------------------PRTSEIYIHRSGRTARANNEGLTVVLIESD 651 (1493)
Q Consensus 619 yd~-------------------P~s~~~yiQR~GRagR~g~~G~~i~l~~~~ 651 (1493)
.++ |.+..+-.||.||+||.+....++.+|...
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~~~ 157 (299)
T d1yksa2 106 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEP 157 (299)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEEeCCC
Confidence 543 256788899999999987666666666543
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.14 E-value=1.4e-10 Score=132.34 Aligned_cols=124 Identities=15% Similarity=0.252 Sum_probs=106.7
Q ss_pred ccCchhhHHHHHHh----hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCe---EEEE
Q psy16310 528 KHDEKDSYLYYFIL----QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS---ILLA 600 (1493)
Q Consensus 528 ~~~~k~~~l~~~l~----~~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~---VLVa 600 (1493)
..+.|...|..++. ..+.++|||++.......+..+|...|+.+..++|.++..+|..+++.|.++... +|++
T Consensus 98 ~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls 177 (346)
T d1z3ix1 98 QLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLS 177 (346)
T ss_dssp GGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEE
T ss_pred ccCHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeec
Confidence 34667777766664 3467999999999999999999999999999999999999999999999987543 6788
Q ss_pred echhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCCCeE--EEEecCC
Q psy16310 601 TDVAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLT--VVLIESD 651 (1493)
Q Consensus 601 Tdv~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~G~~--i~l~~~~ 651 (1493)
|.+++.|||++++++||+||+++|+..+.|++||+-|.|....+ +.|+..+
T Consensus 178 ~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~ 230 (346)
T d1z3ix1 178 SKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 230 (346)
T ss_dssp GGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred chhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCC
Confidence 89999999999999999999999999999999999999987544 4444443
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.07 E-value=2.9e-10 Score=129.65 Aligned_cols=122 Identities=15% Similarity=0.274 Sum_probs=104.6
Q ss_pred cchhhHHHHHHH----hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCC---eEEeeh
Q psy16310 1063 DEKDSYLYYFIL----QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNS---ILLATD 1135 (1493)
Q Consensus 1063 ~~k~~~l~~~l~----~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~---VLVaTd 1135 (1493)
..|...+..++. ..+.++|||++.....+.+...|...|+....+||.++..+|..+++.|.++... +|++|.
T Consensus 100 S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~ 179 (346)
T d1z3ix1 100 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 179 (346)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred CHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecch
Confidence 456666555553 3467999999999999999999999999999999999999999999999987543 677889
Q ss_pred hhhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCCeEEE--EecCC
Q psy16310 1136 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLV--LIESD 1184 (1493)
Q Consensus 1136 v~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~--l~~~~ 1184 (1493)
+++.|+|++.+++||+||+++++..+.|++||+-|.|+...+.+ |+..+
T Consensus 180 agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~ 230 (346)
T d1z3ix1 180 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 230 (346)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred hhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCC
Confidence 99999999999999999999999999999999999998765544 44444
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.04 E-value=2.5e-10 Score=124.96 Aligned_cols=124 Identities=13% Similarity=0.194 Sum_probs=92.2
Q ss_pred cCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHh-cCCCccccccCCCHHHHHHHHHHHhcCC-CeEEEE-ec
Q psy16310 529 HDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTM-LKCSPLPLHASMNQRQRLKNLDRFRDQN-NSILLA-TD 602 (1493)
Q Consensus 529 ~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~-~~~~~~~lhg~~~~~~R~~vl~~Fr~g~-~~VLVa-Td 602 (1493)
.+.|...+..++.. .+.++||||+.......+...|.. .+..+..+||+++..+|..+++.|.++. ..|||+ |.
T Consensus 67 ~S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~ 146 (244)
T d1z5za1 67 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 146 (244)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred hhhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccccchhcccccc
Confidence 35677777777754 467999999999999999988865 4889999999999999999999998764 566655 47
Q ss_pred hhhccCCCCCCcEEEEecCCCChHHHHHHHhccccCCCC--CeEEEEecCCc
Q psy16310 603 VAARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNE--GLTVVLIESDE 652 (1493)
Q Consensus 603 v~~rGlDip~v~~VI~yd~P~s~~~yiQR~GRagR~g~~--G~~i~l~~~~e 652 (1493)
+++.|+|++.+++||+||+|.|+..+.|+.||+-|.|.. -.++.|+..+.
T Consensus 147 ~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~~T 198 (244)
T d1z5za1 147 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 198 (244)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred ccccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEeeCCC
Confidence 888999999999999999999999999999999999864 45555665553
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.03 E-value=2.6e-10 Score=124.75 Aligned_cols=122 Identities=13% Similarity=0.202 Sum_probs=89.8
Q ss_pred cchhhHHHHHHHh---CCCcEEEEecchhhHHHHHHHHHh-cCCCccccccCCCHHHHHHHHHHHhcCC-CCeEEe-ehh
Q psy16310 1063 DEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTM-LKCSPLPLHASMNQRQRLKNLDRFRDQN-NSILLA-TDV 1136 (1493)
Q Consensus 1063 ~~k~~~l~~~l~~---~~~~~IVF~~s~~~~~~l~~~L~~-~~~~~~~lhg~m~~~~R~~~~~~F~~g~-~~VLVa-Tdv 1136 (1493)
..|...+..++.. .+.++||||+.....+.+...|.. .+..+..+||+++..+|..+++.|.++. ..|||+ |.+
T Consensus 68 S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~~ 147 (244)
T d1z5za1 68 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 147 (244)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred hhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccccchhccccccc
Confidence 4566777766653 577999999999999999988865 4888999999999999999999998764 667655 478
Q ss_pred hhccccCCCccEEEEecCCCChhHHHHHHhccCCCCCCC--eEEEEecCC
Q psy16310 1137 AARGLDIPGIEHVIHYHVPRTSEIYIHRSGRTARANNEG--LTLVLIESD 1184 (1493)
Q Consensus 1137 ~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G--~~i~l~~~~ 1184 (1493)
.+.|+|++.+++||+|++|.++..+.|++||+-|.|+.. ..+.|+..+
T Consensus 148 ~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~~ 197 (244)
T d1z5za1 148 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 197 (244)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred cccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEeeCC
Confidence 999999999999999999999999999999999998643 344455554
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.93 E-value=1.5e-09 Score=107.55 Aligned_cols=125 Identities=20% Similarity=0.246 Sum_probs=100.1
Q ss_pred ccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEec
Q psy16310 526 LCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 602 (1493)
Q Consensus 526 ~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaTd 602 (1493)
+.....|...+...+.. .+.++||||.|.+..+.++.+|...++...++++.....+- .+-...-....|.|||+
T Consensus 13 f~T~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~~~Ea--~II~~Ag~~g~VtIATN 90 (175)
T d1tf5a4 13 YRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREA--QIIEEAGQKGAVTIATN 90 (175)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHH--HHHTTTTSTTCEEEEET
T ss_pred EcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhHHHHH--HHHHhccCCCceeehhh
Confidence 33445666666655543 36799999999999999999999999999999987543333 23333334457999999
Q ss_pred hhhccCCCC---CCc-----EEEEecCCCChHHHHHHHhccccCCCCCeEEEEecCCc
Q psy16310 603 VAARGLDIP---GIE-----HVIHYHVPRTSEIYIHRSGRTARANNEGLTVVLIESDE 652 (1493)
Q Consensus 603 v~~rGlDip---~v~-----~VI~yd~P~s~~~yiQR~GRagR~g~~G~~i~l~~~~e 652 (1493)
+|+||.||. +|. |||....|.|..-..|..||+||.|.+|.+.+|++-+|
T Consensus 91 mAGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD 148 (175)
T d1tf5a4 91 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 148 (175)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEEEEcCH
Confidence 999999984 222 89999999999999999999999999999999997766
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.91 E-value=4.4e-09 Score=104.15 Aligned_cols=124 Identities=20% Similarity=0.205 Sum_probs=99.2
Q ss_pred ecccchhhHHHHHHHh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeehh
Q psy16310 1060 CKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATDV 1136 (1493)
Q Consensus 1060 ~~~~~k~~~l~~~l~~---~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTdv 1136 (1493)
....+|...++..+.. .+.|+||||.|+..++.++..|...++...++++..... +..+-...-..-.|.|||++
T Consensus 14 ~T~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~~~--Ea~II~~Ag~~g~VtIATNm 91 (175)
T d1tf5a4 14 RTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHER--EAQIIEEAGQKGAVTIATNM 91 (175)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHH--HHHHHTTTTSTTCEEEEETT
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhHHH--HHHHHHhccCCCceeehhhH
Confidence 3445666666665543 478999999999999999999999999999999875433 33333333344579999999
Q ss_pred hhccccCC--------CccEEEEecCCCChhHHHHHHhccCCCCCCCeEEEEecCCC
Q psy16310 1137 AARGLDIP--------GIEHVIHYHVPRTSEIYIHRSGRTARANNEGLTLVLIESDE 1185 (1493)
Q Consensus 1137 ~~~GiDip--------~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~e 1185 (1493)
++||.||. +=-|||.-..|.+..-..|..||+||.|.+|.+.+|++-.|
T Consensus 92 AGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD 148 (175)
T d1tf5a4 92 AGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 148 (175)
T ss_dssp SSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEEEEcCH
Confidence 99999994 22389999999999999999999999999999999986554
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.60 E-value=1.8e-07 Score=105.14 Aligned_cols=162 Identities=15% Similarity=0.131 Sum_probs=99.0
Q ss_pred CCcHHHHhhHHHhh--------ccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHH
Q psy16310 790 TPTKIQSMVMPSAL--------LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEE 861 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l--------~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (1493)
.+.|+|.+++..++ ..+..+|++-..|.|||+..+. ++..++.....
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia-~l~~l~~~~~~------------------------ 109 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCIT-LIWTLLKQSPD------------------------ 109 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHH-HHHHHHHCCTT------------------------
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHH-HHHHHHHhccc------------------------
Confidence 57899999996332 2345688899999999986433 33333321100
Q ss_pred hhhcchhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHH---HhcC-----CCcEEEEC
Q psy16310 862 ESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---ILNK-----CPHILVAT 933 (1493)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~---~l~~-----~~~IlV~T 933 (1493)
.......+|||||.. |+.|+.+++.+++.. ...+..++|+........ .... ..+|+|+|
T Consensus 110 ----------~~~~~~~~LIV~P~s-l~~qW~~Ei~k~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~s 177 (298)
T d1z3ix2 110 ----------CKPEIDKVIVVSPSS-LVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIIS 177 (298)
T ss_dssp ----------SSCSCSCEEEEECHH-HHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEE
T ss_pred ----------ccCCCCcEEEEccch-hhHHHHHHHHhhcCC-ceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEe
Confidence 111234699999985 889999999987643 244555666543332211 1211 34799999
Q ss_pred cHHHHHHHHhCcCccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEeccccc
Q psy16310 934 PGRLWEFIQLGHFHLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001 (1493)
Q Consensus 934 P~rl~~~l~~~~~~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~ 1001 (1493)
.+.+..... .. .-.+.++||+||||++-..+ ......+..+ .....+++|||+-.
T Consensus 178 y~~~~~~~~--~l---~~~~~~~vI~DEaH~ikn~~--s~~~~a~~~l------~~~~rllLTGTPi~ 232 (298)
T d1z3ix2 178 YETFRLHAE--VL---HKGKVGLVICDEGHRLKNSD--NQTYLALNSM------NAQRRVLISGTPIQ 232 (298)
T ss_dssp HHHHHHHTT--TT---TTSCCCEEEETTGGGCCTTC--HHHHHHHHHH------CCSEEEEECSSCSG
T ss_pred ecccccchh--cc---cccceeeeeccccccccccc--chhhhhhhcc------ccceeeeecchHHh
Confidence 887754322 11 11256899999999986533 2333344444 23467899999864
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.51 E-value=3.8e-07 Score=102.32 Aligned_cols=134 Identities=17% Similarity=0.142 Sum_probs=83.8
Q ss_pred CChHHHHhhhhhhh---------ccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHH
Q psy16310 173 TPTKIQSMVMPSAL---------LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELE 243 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l---------~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1493)
.++|+|.+++. .| ..+...|++-..|.|||+..+. ++..+......
T Consensus 55 ~Lr~hQ~~gv~-~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia-~l~~l~~~~~~----------------------- 109 (298)
T d1z3ix2 55 VLRPHQREGVK-FLWDCVTGRRIENSYGCIMADEMGLGKTLQCIT-LIWTLLKQSPD----------------------- 109 (298)
T ss_dssp TCCHHHHHHHH-HHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHH-HHHHHHHCCTT-----------------------
T ss_pred cccHHHHHHHH-HHHHHHHhhhhccCCceEEEeCCCCCHHHHHHH-HHHHHHHhccc-----------------------
Confidence 48999999986 33 2345689999999999997543 33333321100
Q ss_pred HhhhcchhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHH---Hhc-----CCCCEEEe
Q psy16310 244 EESANTTEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLR---ILN-----KCPHILVA 315 (1493)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~---~l~-----~~~~IiV~ 315 (1493)
......++|||||.. |+.|+.+.+.++... ...+..++|+........ ... ...+|+|+
T Consensus 110 -----------~~~~~~~~LIV~P~s-l~~qW~~Ei~k~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~ 176 (298)
T d1z3ix2 110 -----------CKPEIDKVIVVSPSS-LVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILII 176 (298)
T ss_dssp -----------SSCSCSCEEEEECHH-HHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEE
T ss_pred -----------ccCCCCcEEEEccch-hhHHHHHHHHhhcCC-ceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEE
Confidence 011224599999985 889999999887542 344555666543322211 111 13479999
Q ss_pred CcHHHHHHHHcCCccccccccccEEEEecCchhh
Q psy16310 316 TPGRLWEFIQLGHFHLTELYKINYLVIDETDRMI 349 (1493)
Q Consensus 316 TP~~L~~~l~~~~~~~~~l~~i~~lViDEAh~ll 349 (1493)
|.+.+..... ... -.++++||+||||++-
T Consensus 177 sy~~~~~~~~--~l~---~~~~~~vI~DEaH~ik 205 (298)
T d1z3ix2 177 SYETFRLHAE--VLH---KGKVGLVICDEGHRLK 205 (298)
T ss_dssp EHHHHHHHTT--TTT---TSCCCEEEETTGGGCC
T ss_pred eecccccchh--ccc---ccceeeeecccccccc
Confidence 9888755332 111 1256899999999884
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.41 E-value=1.9e-07 Score=100.50 Aligned_cols=150 Identities=15% Similarity=0.127 Sum_probs=92.9
Q ss_pred CCcHHHHhhHHHhh---ccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 790 TPTKIQSMVMPSAL---LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l---~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
++.|+|.+++..++ ..+..+|++-++|.|||+..+. ++..+...
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~-~~~~~~~~-------------------------------- 58 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKE-------------------------------- 58 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHT--------------------------------
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHH-hhhhhhhc--------------------------------
Confidence 57899999996433 2345689999999999998644 33333221
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHHHHHHhCcC
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 946 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~~~l~~~~~ 946 (1493)
.....+||||| ..++.|+.+.+..+.... .+....+...... ....+|+++|.+.+...-..
T Consensus 59 -------~~~~~~LIv~p-~~l~~~W~~e~~~~~~~~--~~~~~~~~~~~~~-----~~~~~vvi~~~~~~~~~~~l--- 120 (230)
T d1z63a1 59 -------NELTPSLVICP-LSVLKNWEEELSKFAPHL--RFAVFHEDRSKIK-----LEDYDIILTTYAVLLRDTRL--- 120 (230)
T ss_dssp -------TCCSSEEEEEC-STTHHHHHHHHHHHCTTS--CEEECSSSTTSCC-----GGGSSEEEEEHHHHTTCHHH---
T ss_pred -------ccccccceecc-hhhhhHHHHHHHhhcccc--cceeeccccchhh-----ccCcCEEEeeHHHHHhHHHH---
Confidence 12235899999 567788999998876433 3333222111100 12358999998887432211
Q ss_pred ccccccceeEEEecccchhccCCChhHHHHHHHHhcccCCCCCceEEEEeccccc
Q psy16310 947 HLTELYKINYLVIDETDRMIESGHFPELKNILDRVTMTETSQPRQTFVFSATLTH 1001 (1493)
Q Consensus 947 ~~~~l~~l~~lVlDEah~ll~~~~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~ 1001 (1493)
. --...++|+||||.+..... .....+..+ .....+++|||+-.
T Consensus 121 --~-~~~~~~vI~DEah~~k~~~s--~~~~~~~~l------~a~~r~~LTgTPi~ 164 (230)
T d1z63a1 121 --K-EVEWKYIVIDEAQNIKNPQT--KIFKAVKEL------KSKYRIALTGTPIE 164 (230)
T ss_dssp --H-TCCEEEEEEETGGGGSCTTS--HHHHHHHTS------CEEEEEEECSSCST
T ss_pred --h-cccceEEEEEhhhcccccch--hhhhhhhhh------ccceEEEEecchHH
Confidence 1 11467899999999866443 222333333 22457899999863
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.38 E-value=3.1e-07 Score=98.85 Aligned_cols=123 Identities=19% Similarity=0.145 Sum_probs=78.2
Q ss_pred CChHHHHhhhhhhh---ccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 173 TPTKIQSMVMPSAL---LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l---~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
.+.|||.+++.-++ ..+..+|++.++|.|||+.++. ++.++...
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~-~~~~~~~~-------------------------------- 58 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKE-------------------------------- 58 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHT--------------------------------
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHH-hhhhhhhc--------------------------------
Confidence 58999999986322 2345689999999999998654 33433321
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHHHHHHHcCCc
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLWEFIQLGHF 329 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L~~~l~~~~~ 329 (1493)
....++||++| ..++.|..+.+..+... ..+....+...... ....+|+++|.+.+...-.
T Consensus 59 -------~~~~~~LIv~p-~~l~~~W~~e~~~~~~~--~~~~~~~~~~~~~~-----~~~~~vvi~~~~~~~~~~~---- 119 (230)
T d1z63a1 59 -------NELTPSLVICP-LSVLKNWEEELSKFAPH--LRFAVFHEDRSKIK-----LEDYDIILTTYAVLLRDTR---- 119 (230)
T ss_dssp -------TCCSSEEEEEC-STTHHHHHHHHHHHCTT--SCEEECSSSTTSCC-----GGGSSEEEEEHHHHTTCHH----
T ss_pred -------ccccccceecc-hhhhhHHHHHHHhhccc--ccceeeccccchhh-----ccCcCEEEeeHHHHHhHHH----
Confidence 12235899998 67778888888887653 33333222211111 1235899999988743221
Q ss_pred cccccccccEEEEecCchhh
Q psy16310 330 HLTELYKINYLVIDETDRMI 349 (1493)
Q Consensus 330 ~~~~l~~i~~lViDEAh~ll 349 (1493)
+.. ....+||+||||++.
T Consensus 120 -l~~-~~~~~vI~DEah~~k 137 (230)
T d1z63a1 120 -LKE-VEWKYIVIDEAQNIK 137 (230)
T ss_dssp -HHT-CCEEEEEEETGGGGS
T ss_pred -Hhc-ccceEEEEEhhhccc
Confidence 111 146789999999884
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.16 E-value=6.4e-06 Score=86.39 Aligned_cols=132 Identities=20% Similarity=0.263 Sum_probs=101.8
Q ss_pred CCCCCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcc
Q psy16310 787 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 866 (1493)
Q Consensus 787 g~~~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1493)
|. .|+++|...-- ++..|+ |+...||=|||+++.+|+.-..+.
T Consensus 78 G~-RhyDVQLiGgi-~L~~G~--iaem~TGEGKTL~a~l~a~l~al~--------------------------------- 120 (273)
T d1tf5a3 78 GM-FPFKVQLMGGV-ALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------------------------------- 120 (273)
T ss_dssp SC-CCCHHHHHHHH-HHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---------------------------------
T ss_pred ce-EEehhHHHHHH-HHHhhh--heeecCCCcchhHHHHHHHHHHhc---------------------------------
Confidence 54 78899998874 566663 889999999999999998755433
Q ss_pred hhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhhCCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEECcHHHH-HHHHhCc
Q psy16310 867 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRLW-EFIQLGH 945 (1493)
Q Consensus 867 ~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~rl~-~~l~~~~ 945 (1493)
|..+=|++..--||.-=++++..+...+|+.|+++..+.......... .+||+.+|...|- |.|+...
T Consensus 121 ---------g~~vhvvTvNdyLA~RDae~m~~iy~~lGlsvg~~~~~~~~~~r~~~Y--~~di~Ygt~~e~~fDyLrd~~ 189 (273)
T d1tf5a3 121 ---------GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY--AADITYSTNNELGFDYLRDNM 189 (273)
T ss_dssp ---------SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT
T ss_pred ---------CCCceEEecCccccchhhhHHhHHHHHcCCCccccccccCHHHHHHHh--hCCceecchhhhhhhhcchhh
Confidence 234788889999999989999999999999999999988876655544 4699999998874 5565433
Q ss_pred Cc---cccccceeEEEecccchhc
Q psy16310 946 FH---LTELYKINYLVIDETDRMI 966 (1493)
Q Consensus 946 ~~---~~~l~~l~~lVlDEah~ll 966 (1493)
.. ....+.+.+.|+||+|.++
T Consensus 190 ~~~~~~~~~r~~~~aIvDEvDsil 213 (273)
T d1tf5a3 190 VLYKEQMVQRPLHFAVIDEVDSIL 213 (273)
T ss_dssp CSSGGGCCCCCCCEEEEETHHHHH
T ss_pred hcChhhhccCCCCEEEEEcchhhh
Confidence 21 1123468899999999875
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.13 E-value=4e-06 Score=83.79 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=97.3
Q ss_pred cccccCchhhHHHHHHhh---CCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCeEEEEe
Q psy16310 525 ILCKHDEKDSYLYYFILQ---HPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLAT 601 (1493)
Q Consensus 525 ~~~~~~~k~~~l~~~l~~---~~~~~IIF~~s~~~a~~L~~~L~~~~~~~~~lhg~~~~~~R~~vl~~Fr~g~~~VLVaT 601 (1493)
++.....|...+...+.. .+.|+||.+.|.+..+.|+.+|...++...+|++.-. +|..-+=.=.--.-.|-|||
T Consensus 12 Vy~T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~h--erEAeIIAqAG~~GaVTIAT 89 (219)
T d1nkta4 12 IYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH--EQEATIIAVAGRRGGVTVAT 89 (219)
T ss_dssp EESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH--HHHHHHHHTTTSTTCEEEEE
T ss_pred EEcCHHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhhH--HHHHHHHHhcccCCcEEeec
Confidence 344455666666655533 4779999999999999999999999999999999743 33322222222335799999
Q ss_pred chhhccCCCCC-----------------------------------------------C-----cEEEEecCCCChHHHH
Q psy16310 602 DVAARGLDIPG-----------------------------------------------I-----EHVIHYHVPRTSEIYI 629 (1493)
Q Consensus 602 dv~~rGlDip~-----------------------------------------------v-----~~VI~yd~P~s~~~yi 629 (1493)
++|+||-||-= | =+||-...-.|-.---
T Consensus 90 NMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRIDn 169 (219)
T d1nkta4 90 NMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDN 169 (219)
T ss_dssp TTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHH
T ss_pred cccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeccccccccccc
Confidence 99999999921 1 1788888888888888
Q ss_pred HHHhccccCCCCCeEEEEecCCcc
Q psy16310 630 HRSGRTARANNEGLTVVLIESDEI 653 (1493)
Q Consensus 630 QR~GRagR~g~~G~~i~l~~~~e~ 653 (1493)
|-.||+||-|.+|.+..|++=+|-
T Consensus 170 QLRGRsGRQGDPGsSrFflSLeDd 193 (219)
T d1nkta4 170 QLRGRSGRQGDPGESRFYLSLGDE 193 (219)
T ss_dssp HHHHTSSGGGCCEEEEEEEETTSH
T ss_pred cccccccccCCCccceeEEeccHH
Confidence 999999999999999999977664
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.12 E-value=7.5e-06 Score=85.88 Aligned_cols=132 Identities=20% Similarity=0.277 Sum_probs=100.9
Q ss_pred CCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 170 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 170 g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
|. +|+++|.-.-- +|..| -|+.+.||-|||+++.+|+.-.-+
T Consensus 78 G~-RhyDVQLiGgi-~L~~G--~iaem~TGEGKTL~a~l~a~l~al---------------------------------- 119 (273)
T d1tf5a3 78 GM-FPFKVQLMGGV-ALHDG--NIAEMKTGEGKTLTSTLPVYLNAL---------------------------------- 119 (273)
T ss_dssp SC-CCCHHHHHHHH-HHHTT--SEEECCTTSCHHHHHHHHHHHHHT----------------------------------
T ss_pred ce-EEehhHHHHHH-HHHhh--hheeecCCCcchhHHHHHHHHHHh----------------------------------
Confidence 54 68999988774 56555 488999999999999999763332
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCHHHHHHHhcCCCCEEEeCcHHH-HHHHHcCC
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKYTPVKVACVVGGMSTEKQLRILNKCPHILVATPGRL-WEFIQLGH 328 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~~~i~v~~~~G~~~~~~~~~~l~~~~~IiV~TP~~L-~~~l~~~~ 328 (1493)
.|..|=|++..--||..=.+++..+...+|++|+++..++.......... +||+.+|..-| .|.|....
T Consensus 120 --------~g~~vhvvTvNdyLA~RDae~m~~iy~~lGlsvg~~~~~~~~~~r~~~Y~--~di~Ygt~~e~~fDyLrd~~ 189 (273)
T d1tf5a3 120 --------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAYA--ADITYSTNNELGFDYLRDNM 189 (273)
T ss_dssp --------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT
T ss_pred --------cCCCceEEecCccccchhhhHHhHHHHHcCCCccccccccCHHHHHHHhh--CCceecchhhhhhhhcchhh
Confidence 23458888999999998888998888889999999999888777665553 69999999876 35554332
Q ss_pred c---cccccccccEEEEecCchhh
Q psy16310 329 F---HLTELYKINYLVIDETDRMI 349 (1493)
Q Consensus 329 ~---~~~~l~~i~~lViDEAh~ll 349 (1493)
. .......+.+.|+||+|.++
T Consensus 190 ~~~~~~~~~r~~~~aIvDEvDsil 213 (273)
T d1tf5a3 190 VLYKEQMVQRPLHFAVIDEVDSIL 213 (273)
T ss_dssp CSSGGGCCCCCCCEEEEETHHHHH
T ss_pred hcChhhhccCCCCEEEEEcchhhh
Confidence 1 11123468999999999986
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.09 E-value=1.9e-05 Score=78.87 Aligned_cols=126 Identities=16% Similarity=0.142 Sum_probs=96.8
Q ss_pred EecccchhhHHHHHHH---hCCCcEEEEecchhhHHHHHHHHHhcCCCccccccCCCHHHHHHHHHHHhcCCCCeEEeeh
Q psy16310 1059 LCKHDEKDSYLYYFIL---QHPGRTLVFCNSISSVKRLTQLLTMLKCSPLPLHASMNQRQRLKNLDRFRDQNNSILLATD 1135 (1493)
Q Consensus 1059 ~~~~~~k~~~l~~~l~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~lhg~m~~~~R~~~~~~F~~g~~~VLVaTd 1135 (1493)
+.....|...++..+. ..+.|+||.+.|+...+.|+.+|...|+...++++.- .+|+.-+=.=....-.|-|||+
T Consensus 13 y~T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~--herEAeIIAqAG~~GaVTIATN 90 (219)
T d1nkta4 13 YKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKY--HEQEATIIAVAGRRGGVTVATN 90 (219)
T ss_dssp ESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSC--HHHHHHHHHTTTSTTCEEEEET
T ss_pred EcCHHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhh--HHHHHHHHHhcccCCcEEeecc
Confidence 3445566666665544 4588999999999999999999999999999999873 3444333222223457999999
Q ss_pred hhhccccCC---C-------------------------------------------------ccEEEEecCCCChhHHHH
Q psy16310 1136 VAARGLDIP---G-------------------------------------------------IEHVIHYHVPRTSEIYIH 1163 (1493)
Q Consensus 1136 v~~~GiDip---~-------------------------------------------------v~~VI~~d~p~s~~~yiq 1163 (1493)
+++||.||- + =-|||--....|..-=-|
T Consensus 91 MAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRIDnQ 170 (219)
T d1nkta4 91 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 170 (219)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred ccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecccccccccccc
Confidence 999999992 1 126777777788888889
Q ss_pred HHhccCCCCCCCeEEEEecCCCH
Q psy16310 1164 RSGRTARANNEGLTLVLIESDEI 1186 (1493)
Q Consensus 1164 r~GR~gR~g~~G~~i~l~~~~e~ 1186 (1493)
-.||+||-|.+|.+.+|++-.|.
T Consensus 171 LRGRsGRQGDPGsSrFflSLeDd 193 (219)
T d1nkta4 171 LRGRSGRQGDPGESRFYLSLGDE 193 (219)
T ss_dssp HHHTSSGGGCCEEEEEEEETTSH
T ss_pred ccccccccCCCccceeEEeccHH
Confidence 99999999999999999976653
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=95.94 E-value=0.0045 Score=69.42 Aligned_cols=69 Identities=20% Similarity=0.272 Sum_probs=48.2
Q ss_pred CcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhhh
Q psy16310 791 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 870 (1493)
Q Consensus 791 pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (1493)
.++.|..|+..++ .++-++++||.|||||.... -++..+...
T Consensus 149 ~~~~Q~~A~~~al-~~~~~vI~G~pGTGKTt~i~-~~l~~l~~~------------------------------------ 190 (359)
T d1w36d1 149 EINWQKVAAAVAL-TRRISVISGGPGTGKTTTVA-KLLAALIQM------------------------------------ 190 (359)
T ss_dssp SCCHHHHHHHHHH-TBSEEEEECCTTSTHHHHHH-HHHHHHHHT------------------------------------
T ss_pred cccHHHHHHHHHH-cCCeEEEEcCCCCCceehHH-HHHHHHHHH------------------------------------
Confidence 4567999998666 45688999999999997732 233333221
Q ss_pred hccCCCeEEEEEcccHHHHHHHHHHHHH
Q psy16310 871 KKTRNKLYALILAPTRELAIQVQNHILD 898 (1493)
Q Consensus 871 ~~~~~~~~~lil~PTreLa~Q~~~~~~~ 898 (1493)
....+.++++++||-.=|..+.+.+..
T Consensus 191 -~~~~~~~I~l~ApTgkAA~~L~e~~~~ 217 (359)
T d1w36d1 191 -ADGERCRIRLAAPTGKAAARLTESLGK 217 (359)
T ss_dssp -CSSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred -HhccCCeEEEecCcHHHHHHHHHHHHH
Confidence 123456799999999888777766543
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=95.86 E-value=0.0048 Score=68.07 Aligned_cols=70 Identities=16% Similarity=-0.014 Sum_probs=50.3
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
+++|-|.+++.. ....++|.|+.|||||.+.+.-+...+...
T Consensus 1 ~L~~eQ~~av~~---~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~----------------------------------- 42 (306)
T d1uaaa1 1 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGC----------------------------------- 42 (306)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred CcCHHHHHHHhC---CCCCEEEEeeCCccHHHHHHHHHHHHHHhc-----------------------------------
Confidence 468999999962 234799999999999987544333322111
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhh
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAG 900 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~ 900 (1493)
..++.++||+++|+.+|..+...+..+.
T Consensus 43 ---~~~~~~ILvlt~tn~a~~~i~~~~~~~~ 70 (306)
T d1uaaa1 43 ---GYQARHIAAVTFTNKAAREMKERVGQTL 70 (306)
T ss_dssp ---CCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred ---CCChhHEEEEeCcHHHHHHHHHHHHHhc
Confidence 1223469999999999999988887754
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=95.86 E-value=0.0058 Score=67.33 Aligned_cols=70 Identities=16% Similarity=-0.003 Sum_probs=50.6
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
+++|-|.+++. .. ...++|.|+.|||||.+.+.-+...+...
T Consensus 1 ~L~~eQ~~av~-~~--~~~~lI~g~aGTGKTt~l~~rv~~ll~~~----------------------------------- 42 (306)
T d1uaaa1 1 RLNPGQQQAVE-FV--TGPCLVLAGAGSGKTRVITNKIAHLIRGC----------------------------------- 42 (306)
T ss_dssp CCCHHHHHHHH-CC--SSEEEECCCTTSCHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred CcCHHHHHHHh-CC--CCCEEEEeeCCccHHHHHHHHHHHHHHhc-----------------------------------
Confidence 47899999996 32 34799999999999998554443333211
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHhc
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDAG 283 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~ 283 (1493)
+.+..++||+++|+.+|..+...+..+.
T Consensus 43 ---~~~~~~ILvlt~tn~a~~~i~~~~~~~~ 70 (306)
T d1uaaa1 43 ---GYQARHIAAVTFTNKAAREMKERVGQTL 70 (306)
T ss_dssp ---CCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred ---CCChhHEEEEeCcHHHHHHHHHHHHHhc
Confidence 1122359999999999999988887764
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=95.66 E-value=0.0055 Score=68.68 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=49.0
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
...+.|..|+..++ .++-++++||.|||||.... .++..+...
T Consensus 148 ~~~~~Q~~A~~~al-~~~~~vI~G~pGTGKTt~i~-~~l~~l~~~----------------------------------- 190 (359)
T d1w36d1 148 DEINWQKVAAAVAL-TRRISVISGGPGTGKTTTVA-KLLAALIQM----------------------------------- 190 (359)
T ss_dssp TSCCHHHHHHHHHH-TBSEEEEECCTTSTHHHHHH-HHHHHHHHT-----------------------------------
T ss_pred ccccHHHHHHHHHH-cCCeEEEEcCCCCCceehHH-HHHHHHHHH-----------------------------------
Confidence 45678999998666 55789999999999998732 233333221
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHH
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHIL 280 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~ 280 (1493)
....+.++++++||-.-|..+.+.+.
T Consensus 191 --~~~~~~~I~l~ApTgkAA~~L~e~~~ 216 (359)
T d1w36d1 191 --ADGERCRIRLAAPTGKAAARLTESLG 216 (359)
T ss_dssp --CSSCCCCEEEEBSSHHHHHHHHHHHT
T ss_pred --HhccCCeEEEecCcHHHHHHHHHHHH
Confidence 11345679999999998888766553
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=94.65 E-value=0.025 Score=62.48 Aligned_cols=70 Identities=19% Similarity=0.106 Sum_probs=50.8
Q ss_pred CCcHHHHhhHHHhhccCCcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhcchhh
Q psy16310 790 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 869 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1493)
.+++-|.+++. .. +..++|.|+.|||||.+.+--+...+...
T Consensus 11 ~L~~eQ~~~v~-~~--~g~~lV~g~aGSGKTt~l~~ri~~ll~~~----------------------------------- 52 (318)
T d1pjra1 11 HLNKEQQEAVR-TT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEK----------------------------------- 52 (318)
T ss_dssp TSCHHHHHHHH-CC--SSCEEEEECTTSCHHHHHHHHHHHHHHTT-----------------------------------
T ss_pred hCCHHHHHHHh-CC--CCCEEEEecCCccHHHHHHHHHHHHHHcC-----------------------------------
Confidence 36899999996 32 34799999999999988654444333221
Q ss_pred hhccCCCeEEEEEcccHHHHHHHHHHHHHhh
Q psy16310 870 VKKTRNKLYALILAPTRELAIQVQNHILDAG 900 (1493)
Q Consensus 870 ~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~ 900 (1493)
...+.+++++++|+..+..+...+....
T Consensus 53 ---~~~p~~il~lt~t~~aa~~~~~~~~~~~ 80 (318)
T d1pjra1 53 ---HVAPWNILAITFTNKAAREMRERVQSLL 80 (318)
T ss_dssp ---CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred ---CCCHHHeEeEeccHHHHHHHHHHHHhhc
Confidence 1122369999999999999988887653
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=94.31 E-value=0.036 Score=61.09 Aligned_cols=69 Identities=19% Similarity=0.129 Sum_probs=49.6
Q ss_pred CChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcchhh
Q psy16310 173 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 252 (1493)
Q Consensus 173 ~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1493)
.+++-|.+++. .. +..++|.|+.|||||.+.+--+.+.+...
T Consensus 11 ~L~~eQ~~~v~-~~--~g~~lV~g~aGSGKTt~l~~ri~~ll~~~----------------------------------- 52 (318)
T d1pjra1 11 HLNKEQQEAVR-TT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEK----------------------------------- 52 (318)
T ss_dssp TSCHHHHHHHH-CC--SSCEEEEECTTSCHHHHHHHHHHHHHHTT-----------------------------------
T ss_pred hCCHHHHHHHh-CC--CCCEEEEecCCccHHHHHHHHHHHHHHcC-----------------------------------
Confidence 37899999996 43 34799999999999998544333333211
Q ss_pred hhcccCceEEEEEcccHHHHHHHHHHHHHh
Q psy16310 253 VKKTRNKLYALILAPTRELAIQVQNHILDA 282 (1493)
Q Consensus 253 ~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l 282 (1493)
....-+++++++|+.++..+...+...
T Consensus 53 ---~~~p~~il~lt~t~~aa~~~~~~~~~~ 79 (318)
T d1pjra1 53 ---HVAPWNILAITFTNKAAREMRERVQSL 79 (318)
T ss_dssp ---CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred ---CCCHHHeEeEeccHHHHHHHHHHHHhh
Confidence 012235999999999999998887654
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.57 E-value=0.44 Score=48.35 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=27.8
Q ss_pred ceeEEEecccchhccCC-ChhHHHHHHHHhcccCCCCCceEEEEecccccc
Q psy16310 953 KINYLVIDETDRMIESG-HFPELKNILDRVTMTETSQPRQTFVFSATLTHS 1002 (1493)
Q Consensus 953 ~l~~lVlDEah~ll~~~-~~~~l~~il~~l~~~~~~~~~q~ll~SATl~~~ 1002 (1493)
..++|+||++|.+.... ....+-.++..+. ..+.++++.|...|..
T Consensus 97 ~~dll~iDDi~~i~~~~~~~~~lf~lin~~~----~~~~~iiits~~~p~~ 143 (213)
T d1l8qa2 97 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLY----LLEKQIILASDRHPQK 143 (213)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHH----HTTCEEEEEESSCGGG
T ss_pred hccchhhhhhhhhcCchHHHHHHHHHHHHHh----hccceEEEecCCcchh
Confidence 56899999999886432 2333555555543 2455666655555533
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.54 E-value=0.077 Score=55.73 Aligned_cols=17 Identities=24% Similarity=0.155 Sum_probs=14.8
Q ss_pred CcEEEEccCCCcchhHh
Q psy16310 807 KDIVGAAETGSGKTLAF 823 (1493)
Q Consensus 807 ~dvlv~apTGsGKTla~ 823 (1493)
+.+|+.||+|+|||..+
T Consensus 41 ~~vLL~GppGtGKT~la 57 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALA 57 (246)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 46999999999999764
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.09 E-value=1.7 Score=43.59 Aligned_cols=34 Identities=12% Similarity=-0.035 Sum_probs=23.6
Q ss_pred cHHHHhhHHHhh---ccC---CcEEEEccCCCcchhHhhH
Q psy16310 792 TKIQSMVMPSAL---LAR---KDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 792 t~iQ~~~i~~~l---~~~---~dvlv~apTGsGKTla~~l 825 (1493)
.|+|..++..+. ..+ +-+++.||.|+|||..+..
T Consensus 4 yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~ 43 (207)
T d1a5ta2 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (207)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHH
Confidence 478777765332 222 3589999999999986544
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.01 E-value=0.65 Score=47.03 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=13.4
Q ss_pred cEEEEccCCCchhHH
Q psy16310 191 DIVGAAETGSGKTLA 205 (1493)
Q Consensus 191 dviv~apTGSGKTl~ 205 (1493)
-++++||+|+|||..
T Consensus 38 ~l~l~G~~G~GKTHL 52 (213)
T d1l8qa2 38 PIFIYGSVGTGKTHL 52 (213)
T ss_dssp SEEEECSSSSSHHHH
T ss_pred cEEEECCCCCcHHHH
Confidence 489999999999975
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.01 E-value=0.39 Score=48.60 Aligned_cols=35 Identities=11% Similarity=-0.066 Sum_probs=24.2
Q ss_pred ChHHHHhhhhhhh---cc---CCcEEEEccCCCchhHHHHH
Q psy16310 174 PTKIQSMVMPSAL---LA---RKDIVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 174 pt~iQ~~~i~~~l---~~---~~dviv~apTGSGKTl~~~l 208 (1493)
.+|||..++.... .. .+-+|++||.|+|||..+..
T Consensus 3 ~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~ 43 (207)
T d1a5ta2 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (207)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHH
Confidence 4578777665332 22 23489999999999997544
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=89.97 E-value=0.37 Score=48.70 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHHH
Q psy16310 191 DIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 191 dviv~apTGSGKTl~~~ 207 (1493)
-+++++|||+|||...+
T Consensus 13 vi~lvGptGvGKTTTiA 29 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCG 29 (213)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46779999999998743
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=89.73 E-value=0.41 Score=48.31 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=14.1
Q ss_pred cEEEEccCCCcchhHhh
Q psy16310 808 DIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 808 dvlv~apTGsGKTla~~ 824 (1493)
-++++||||+|||....
T Consensus 13 vi~lvGptGvGKTTTiA 29 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCG 29 (213)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999998744
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=89.51 E-value=0.26 Score=55.31 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=47.0
Q ss_pred CCcHHHHhhHHHhh---ccC-CcEEEEccCCCcchhHhhHHHHHHHhhhcCCCCCcccCCcchhHHHHHHHHHHHHhhhc
Q psy16310 790 TPTKIQSMVMPSAL---LAR-KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 865 (1493)
Q Consensus 790 ~pt~iQ~~~i~~~l---~~~-~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1493)
.|+--|=+||..++ ..| +..++.|-||||||++.. .++...
T Consensus 11 ~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA-~l~~~~---------------------------------- 55 (413)
T d1t5la1 11 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTIS-NVIAQV---------------------------------- 55 (413)
T ss_dssp CCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHH-HHHHHH----------------------------------
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHH-HHHHHh----------------------------------
Confidence 56666766665333 234 678899999999997532 222221
Q ss_pred chhhhhccCCCeEEEEEcccHHHHHHHHHHHHHhh
Q psy16310 866 TTEFVKKTRNKLYALILAPTRELAIQVQNHILDAG 900 (1493)
Q Consensus 866 ~~~~~~~~~~~~~~lil~PTreLa~Q~~~~~~~~~ 900 (1493)
+..+|||+|+..+|.|+++.++.+.
T Consensus 56 ----------~rp~LVVt~n~~~A~qL~~dL~~~l 80 (413)
T d1t5la1 56 ----------NKPTLVIAHNKTLAGQLYSELKEFF 80 (413)
T ss_dssp ----------TCCEEEECSSHHHHHHHHHHHHHHC
T ss_pred ----------CCCEEEEeCCHHHHHHHHHHHHHHc
Confidence 1138999999999999999999875
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=89.28 E-value=0.31 Score=49.16 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=14.8
Q ss_pred CCcE-EEEccCCCchhHHHHH
Q psy16310 189 RKDI-VGAAETGSGKTLAFGI 208 (1493)
Q Consensus 189 ~~dv-iv~apTGSGKTl~~~l 208 (1493)
.+++ ++++|||+|||...+-
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaK 29 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAK 29 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 3454 5699999999987443
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=89.27 E-value=0.43 Score=48.02 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=13.9
Q ss_pred EEEEccCCCcchhHhhH
Q psy16310 809 IVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 809 vlv~apTGsGKTla~~l 825 (1493)
++++||||+|||.+..-
T Consensus 12 i~lvGptGvGKTTTiAK 28 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGK 28 (211)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 56799999999987543
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.69 E-value=3 Score=42.66 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=31.4
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHhhhhhhhccCCcEEEEccCCCchhHHHHHHHHHHHH
Q psy16310 150 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 215 (1493)
Q Consensus 150 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~~~lpil~~l~ 215 (1493)
+.+|.++-..+.+.+.|... +... .-.+.+|+.||+|+|||.++.+ +.+.+.
T Consensus 8 P~~~~dlig~~~~~~~L~~~------------i~~~-~~~~~~Ll~Gp~G~GKtt~a~~-~~~~l~ 59 (239)
T d1njfa_ 8 PQTFADVVGQEHVLTALANG------------LSLG-RIHHAYLFSGTRGVGKTSIARL-LAKGLN 59 (239)
T ss_dssp CSSGGGSCSCHHHHHHHHHH------------HHTT-CCCSEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CCCHHHccChHHHHHHHHHH------------HHcC-CCCeeEEEECCCCCcHHHHHHH-HHHHhc
Confidence 34677776677777665422 1100 0123589999999999987554 444443
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=87.62 E-value=0.36 Score=48.63 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=14.3
Q ss_pred Cc-EEEEccCCCcchhHhhH
Q psy16310 807 KD-IVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 807 ~d-vlv~apTGsGKTla~~l 825 (1493)
++ +++++|||+|||....-
T Consensus 10 ~~vi~lvGp~GvGKTTTiaK 29 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAK 29 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45 46699999999976443
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=87.46 E-value=0.45 Score=53.29 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=45.9
Q ss_pred ChHHHHhhhhhh---hccC-CcEEEEccCCCchhHHHHHHHHHHHHhhccCCCCccCCCccchHHHHHHHHHHHHhhhcc
Q psy16310 174 PTKIQSMVMPSA---LLAR-KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 249 (1493)
Q Consensus 174 pt~iQ~~~i~~~---l~~~-~dviv~apTGSGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1493)
|+--|=++|..+ |..| ++.++.|-||||||++..- ++...
T Consensus 12 p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~-l~~~~----------------------------------- 55 (413)
T d1t5la1 12 PQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISN-VIAQV----------------------------------- 55 (413)
T ss_dssp CCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHH-HHHHH-----------------------------------
T ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHHH-HHHHh-----------------------------------
Confidence 555555555422 3334 6788999999999986422 22111
Q ss_pred hhhhhcccCceEEEEEcccHHHHHHHHHHHHHhcCC
Q psy16310 250 TEFVKKTRNKLYALILAPTRELAIQVQNHILDAGKY 285 (1493)
Q Consensus 250 ~~~~~~~~~~~~aLiL~PTreLa~Qi~~~~~~l~~~ 285 (1493)
+..+|||+|+..+|.|+++.+..+...
T Consensus 56 ---------~rp~LVVt~n~~~A~qL~~dL~~~l~~ 82 (413)
T d1t5la1 56 ---------NKPTLVIAHNKTLAGQLYSELKEFFPH 82 (413)
T ss_dssp ---------TCCEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred ---------CCCEEEEeCCHHHHHHHHHHHHHHcCC
Confidence 112899999999999999999988643
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=87.44 E-value=0.16 Score=55.47 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=29.9
Q ss_pred HHHHHCCCCC---CcHHHHhhHHHhhccCCcEEEEccCCCcchhH
Q psy16310 781 RALYQKGFKT---PTKIQSMVMPSALLARKDIVGAAETGSGKTLA 822 (1493)
Q Consensus 781 ~~l~~~g~~~---pt~iQ~~~i~~~l~~~~dvlv~apTGsGKTla 822 (1493)
..+...|+.. +.+-+...+..++..+++++++|+||||||..
T Consensus 138 ~~l~~~g~~~~~~~~~~~~~~l~~~v~~~~nili~G~tgSGKTT~ 182 (323)
T d1g6oa_ 138 SFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTY 182 (323)
T ss_dssp HHHHHTTTTTTCSSHHHHHHHHHHHHHHTCCEEEEESTTSSHHHH
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHhCCCEEEEeeccccchHH
Confidence 3344445433 34555666666778889999999999999975
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=86.18 E-value=0.37 Score=48.50 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=13.7
Q ss_pred EEEEccCCCchhHHHHH
Q psy16310 192 IVGAAETGSGKTLAFGI 208 (1493)
Q Consensus 192 viv~apTGSGKTl~~~l 208 (1493)
+++++|||+|||...+=
T Consensus 12 i~lvGptGvGKTTTiAK 28 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGK 28 (211)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 55799999999997443
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=85.62 E-value=0.29 Score=53.19 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=31.6
Q ss_pred HHHHHHCCCCC---ChHHHHhhhhhhhccCCcEEEEccCCCchhHH
Q psy16310 163 IRALYQKGFKT---PTKIQSMVMPSALLARKDIVGAAETGSGKTLA 205 (1493)
Q Consensus 163 ~~~l~~~g~~~---pt~iQ~~~i~~~l~~~~dviv~apTGSGKTl~ 205 (1493)
+..+...|+-. ..+-+...+..++..++|++|+|+||||||..
T Consensus 137 l~~l~~~g~~~~~~~~~~~~~~l~~~v~~~~nili~G~tgSGKTT~ 182 (323)
T d1g6oa_ 137 HSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTY 182 (323)
T ss_dssp HHHHHHTTTTTTCSSHHHHHHHHHHHHHHTCCEEEEESTTSSHHHH
T ss_pred hHHHHHHhhhcccccHHHHHHHHHHHHHhCCCEEEEeeccccchHH
Confidence 34455555533 34556667777778899999999999999986
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=85.20 E-value=0.6 Score=46.86 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCcchhHhhH
Q psy16310 806 RKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 806 ~~dvlv~apTGsGKTla~~l 825 (1493)
++-++++||||+|||.+..-
T Consensus 6 ~~vi~lvGptGvGKTTTiaK 25 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAK 25 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 45678899999999987543
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=84.70 E-value=0.47 Score=47.77 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=9.7
Q ss_pred cEEEEccCCCchhHHHH
Q psy16310 191 DIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 191 dviv~apTGSGKTl~~~ 207 (1493)
-+++++|||+|||...+
T Consensus 14 vi~lvGptGvGKTTTiA 30 (211)
T d1j8yf2 14 VIMLVGVQGTGKATTAG 30 (211)
T ss_dssp EEEEECSCCC----HHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35669999999998743
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=84.60 E-value=0.52 Score=47.42 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=9.9
Q ss_pred cEEEEccCCCcchhHhh
Q psy16310 808 DIVGAAETGSGKTLAFG 824 (1493)
Q Consensus 808 dvlv~apTGsGKTla~~ 824 (1493)
-++++||||+|||....
T Consensus 14 vi~lvGptGvGKTTTiA 30 (211)
T d1j8yf2 14 VIMLVGVQGTGKATTAG 30 (211)
T ss_dssp EEEEECSCCC----HHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36679999999998744
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.90 E-value=2.7 Score=43.04 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=30.6
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHhhcc---CCcEEEEccCCCcchhHhhHHHHHHH
Q psy16310 768 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA---RKDIVGAAETGSGKTLAFGIPILTGI 831 (1493)
Q Consensus 768 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~~---~~dvlv~apTGsGKTla~~lpil~~l 831 (1493)
..|.++-.++.+.+.|... +.. .+.+|+.||+|+|||.++. .+...+
T Consensus 9 ~~~~dlig~~~~~~~L~~~----------------i~~~~~~~~~Ll~Gp~G~GKtt~a~-~~~~~l 58 (239)
T d1njfa_ 9 QTFADVVGQEHVLTALANG----------------LSLGRIHHAYLFSGTRGVGKTSIAR-LLAKGL 58 (239)
T ss_dssp SSGGGSCSCHHHHHHHHHH----------------HHTTCCCSEEEEECSTTSSHHHHHH-HHHHHH
T ss_pred CCHHHccChHHHHHHHHHH----------------HHcCCCCeeEEEECCCCCcHHHHHH-HHHHHh
Confidence 4577777777777766421 111 2358999999999998654 344444
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.90 E-value=2.4 Score=42.02 Aligned_cols=32 Identities=13% Similarity=-0.201 Sum_probs=22.9
Q ss_pred HHhhhhhhhc--cCCcEEEEccCCCchhHHHHHH
Q psy16310 178 QSMVMPSALL--ARKDIVGAAETGSGKTLAFGIP 209 (1493)
Q Consensus 178 Q~~~i~~~l~--~~~dviv~apTGSGKTl~~~lp 209 (1493)
|.+.+..++. .+.++|++||.|+|||..+...
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l 35 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLEL 35 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHH
Confidence 5555554444 3568999999999999886543
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=83.79 E-value=0.75 Score=46.10 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHHH
Q psy16310 189 RKDIVGAAETGSGKTLAFG 207 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~~ 207 (1493)
++-+++++|||+|||...+
T Consensus 6 ~~vi~lvGptGvGKTTTia 24 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIA 24 (207)
T ss_dssp SSEEEEECSTTSSHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4456789999999999743
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.20 E-value=1.8 Score=42.92 Aligned_cols=31 Identities=13% Similarity=-0.183 Sum_probs=22.6
Q ss_pred HHhhHHHhhc--cCCcEEEEccCCCcchhHhhH
Q psy16310 795 QSMVMPSALL--ARKDIVGAAETGSGKTLAFGI 825 (1493)
Q Consensus 795 Q~~~i~~~l~--~~~dvlv~apTGsGKTla~~l 825 (1493)
|.+.+..++. .+..+++.||.|+|||..+..
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~ 34 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLE 34 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 5566655554 346899999999999977543
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=80.04 E-value=0.33 Score=55.22 Aligned_cols=18 Identities=39% Similarity=0.381 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCchhHHH
Q psy16310 189 RKDIVGAAETGSGKTLAF 206 (1493)
Q Consensus 189 ~~dviv~apTGSGKTl~~ 206 (1493)
.+|+|+.+|||+|||+.+
T Consensus 49 ksNILliGPTGvGKTlLA 66 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIA 66 (443)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred cccEEEECCCCCCHHHHH
Confidence 569999999999999974
|