Psyllid ID: psy16332

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MSLLDGLFMDENEVTDNAFSLIFAFDEIVALGYRESVNLAQEATKIKLKNIKIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVTHPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEHEEKELNQVTISIPLPLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKIFIEKLFLLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIK
ccccccccccHHHHHHHHccccccccEEEEEEcccccccEEEEEEEEEccccEEHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEcccEEEEEEEEcccccEEEEccccccEEEcccccccHHHHccccEEEEccccccccccccEEEEEEEEcccccccccEEEEEEccccccccEEEEEEEEEEcccccccEEEEEEcccccccccEEEccccEEEEccccEEEEEEEEEccccccEEEEEEEcccccccEEEEEEEEEEcccEEEEEEEEEEEEcccccccEEEEEcEEEEEccccEEEEEEEEEccccccEEEEEEccccccccEEEEEEEEEEcccccccc
ccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccEEEEHcHHHccHHHHHHHHHHcHHHccccccEEEEEcccEEEEEccHHHEEEEEEEcccccHHHHHHHHHHHHHcccccccHHHHccccEEEEcccccccccccccEEEEEEEEccccccccEEEEEEccccccccEEEEEEEEEccccccccEEEEEEEcccccccEEEEEcEEEEEcccccEEEEEEEEEcccccccEEEEEEccccccccccEEEEEEccccEEEEEEEEEEEcccccccEEEEEccEEEEcccccEEEEEEEEEEccccccEEEEEEccccccccccEEEEEEccccEEccc
mslldglfmdenevtdNAFSLIFAFDEIVALGYRESVNLAQEATKIKLKNIKIAIVSRQFVEMTRARIEGLLAAFPklmssgkqhtfvetdsvryVYQPLEKLYMLLITTKTSNILEDLETLRLFsrvthpnvdkelfkskteiglknpskpfplnndigvlkwrftstdesclplsincwpsdngsggcdvniEYELEHEEKELNqvtisiplplhctpnvtecdgdynydarknTLTWSLALIdssnksgalefsapsasqsdffplqvsfscNQSYANIKIFIEKLFLlhctpnvtecdgdynydarknTLTWSLALIdssnksgalefsapsasqsdffplqvsfscnqsyanik
MSLLDGLFMDENEVTDNAFSLIFAFDEIVALGYRESVNLAQEAtkiklknikiaIVSRQFVEMTRARIEGLLAAFPKLmssgkqhtfvetdSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLfsrvthpnvdkelfkskteiglknpskpfplnnDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEHEEKELNQVTISIPLPLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKIFIEKLFLLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIK
MSLLDGLFMDENEVTDNAFSLIFAFDEIVALGYRESVNLAQEATKIKLKNIKIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVTHPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIeyeleheekeLNQVTISIPLPLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKIFIEKLFLLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIK
******LFMDENEVTDNAFSLIFAFDEIVALGYRESVNLAQEATKIKLKNIKIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVTHPNVDKELFKSKTEIGL*****PFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEHEEKELNQVTISIPLPLHCTPNVTECDGDYNYDARKNTLTWSLALID******************DFFPLQVSFSCNQSYANIKIFIEKLFLLHCTPNVTECDGDYNYDARKNTLTWSLALID*************************************
**L*DGLFMDENEVTDNAFSLIFAFDEIVALGYRESVNLAQEATKIKLKNI***************************************DSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVTHPNVDKELFKSKTEI********FPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEHEEKELNQVTISIPLPLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKIFIEKLFLLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANI*
MSLLDGLFMDENEVTDNAFSLIFAFDEIVALGYRESVNLAQEATKIKLKNIKIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVTHPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEHEEKELNQVTISIPLPLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKIFIEKLFLLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIK
**LLDGLFMDENEVTDNAFSLIFAFDEIVALGYRESVNLAQEATKIKLKNIKIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVTHPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEHEEKELNQVTISIPLPLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKIFIEKLFLLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIK
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MSLLDGLFMDENEVTDNAFSLIFAFDEIVALGYRESVNLAQEATKIKLKNIKIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVTHPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEHEEKELNQVTISIPLPLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKIFIEKLFLLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query359 2.2.26 [Sep-21-2011]
Q66H80511 Coatomer subunit delta OS yes N/A 0.454 0.318 0.536 1e-50
Q5XJY5511 Coatomer subunit delta OS yes N/A 0.454 0.318 0.536 2e-50
Q5RA77511 Coatomer subunit delta OS yes N/A 0.454 0.318 0.531 6e-50
P48444511 Coatomer subunit delta OS yes N/A 0.454 0.318 0.531 6e-50
P53619511 Coatomer subunit delta OS yes N/A 0.454 0.318 0.531 9e-50
Q5ZL57510 Coatomer subunit delta OS yes N/A 0.454 0.319 0.525 3e-49
Q09236515 Probable coatomer subunit yes N/A 0.428 0.299 0.464 3e-39
Q0DJA0524 Coatomer subunit delta-1 yes N/A 0.428 0.293 0.481 4e-38
P49661518 Coatomer subunit delta-3 no N/A 0.428 0.297 0.474 8e-38
Q0DJ99523 Coatomer subunit delta-2 yes N/A 0.428 0.294 0.474 1e-37
>sp|Q66H80|COPD_RAT Coatomer subunit delta OS=Rattus norvegicus GN=Arcn1 PE=2 SV=1 Back     alignment and function desciption
 Score =  200 bits (508), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/177 (53%), Positives = 128/177 (72%), Gaps = 14/177 (7%)

Query: 129 THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSG 188
           THPNVDK+LF +++ IGLKNP K FP+N+D+GVLKWR  +T+ES +PL+INCWPS++G+ 
Sbjct: 329 THPNVDKKLFTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGN- 387

Query: 189 GCDVNIEYELEHEEKELNQVTISIPLPLHC-TPNVTECDGDYNYDARKNTLTWSLALIDS 247
           GCDVNIEYEL+ +  ELN V I+IPLP     P + E DG+Y +D+R+NTL W L +ID+
Sbjct: 388 GCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDA 447

Query: 248 SNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKIFIEKLFLLHCTPNVTECDGD 304
            NKSG+LEFS P    +DFFP+QVSF   ++Y NI++             VT+ DG+
Sbjct: 448 KNKSGSLEFSIP-GQPNDFFPVQVSFISKKNYCNIQV-----------TKVTQVDGN 492
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors.
Rattus norvegicus (taxid: 10116)
>sp|Q5XJY5|COPD_MOUSE Coatomer subunit delta OS=Mus musculus GN=Arcn1 PE=2 SV=2 Back     alignment and function description
>sp|Q5RA77|COPD_PONAB Coatomer subunit delta OS=Pongo abelii GN=ARCN1 PE=2 SV=1 Back     alignment and function description
>sp|P48444|COPD_HUMAN Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE=1 SV=1 Back     alignment and function description
>sp|P53619|COPD_BOVIN Coatomer subunit delta OS=Bos taurus GN=ARCN1 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZL57|COPD_CHICK Coatomer subunit delta OS=Gallus gallus GN=ARCN1 PE=2 SV=1 Back     alignment and function description
>sp|Q09236|COPD_CAEEL Probable coatomer subunit delta OS=Caenorhabditis elegans GN=C13B9.3 PE=3 SV=1 Back     alignment and function description
>sp|Q0DJA0|COPD1_ORYSJ Coatomer subunit delta-1 OS=Oryza sativa subsp. japonica GN=Os05g0310800 PE=2 SV=1 Back     alignment and function description
>sp|P49661|COPD3_ORYSJ Coatomer subunit delta-3 OS=Oryza sativa subsp. japonica GN=Os01g0833700 PE=2 SV=2 Back     alignment and function description
>sp|Q0DJ99|COPD2_ORYSJ Coatomer subunit delta-2 OS=Oryza sativa subsp. japonica GN=Os05g0311000 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
449489276259 PREDICTED: coatomer subunit delta [Taeni 0.598 0.830 0.579 1e-74
332018213 565 Coatomer subunit delta [Acromyrmex echin 0.428 0.272 0.666 1e-61
307198423 521 Coatomer subunit delta [Harpegnathos sal 0.428 0.295 0.666 2e-61
66551478 515 PREDICTED: coatomer subunit delta isofor 0.417 0.291 0.653 8e-61
380014779 514 PREDICTED: coatomer subunit delta-like [ 0.417 0.291 0.653 8e-61
383850756 515 PREDICTED: coatomer subunit delta-like [ 0.428 0.299 0.647 9e-61
350398649 515 PREDICTED: coatomer subunit delta-like [ 0.417 0.291 0.653 1e-60
340710005 515 PREDICTED: coatomer subunit delta-like [ 0.417 0.291 0.641 2e-59
157135042 519 coatomer delta subunit [Aedes aegypti] g 0.431 0.298 0.632 2e-59
158289783 537 AGAP010719-PA [Anopheles gambiae str. PE 0.428 0.286 0.642 4e-59
>gi|449489276|ref|XP_002188477.2| PREDICTED: coatomer subunit delta [Taeniopygia guttata] Back     alignment and taxonomy information
 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 146/252 (57%), Positives = 181/252 (71%), Gaps = 37/252 (14%)

Query: 54  AIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTS 113
           AIVSRQFVEMTR RIEGLLAAFPKLM++GKQHTFVET+SVRYVYQP+EKLYM+LITTK S
Sbjct: 25  AIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNS 84

Query: 114 NILEDLETLRLFSRVTHPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESC 173
           NILEDLETLRLFSRV+                       FP+N+D+GVLKWR  +T+ES 
Sbjct: 85  NILEDLETLRLFSRVS-----------------------FPINSDVGVLKWRLQTTEESF 121

Query: 174 LPLSINCWPSDNGSGGCDVNIEYELEHEEKELNQVTISIPLPLHC-TPNVTECDGDYNYD 232
           +PL+INCWPS++G+  CDVNIEYEL+ E  ELN VTI+IPLP     P + E DG+Y +D
Sbjct: 122 IPLTINCWPSESGN-SCDVNIEYELQEESLELNDVTITIPLPSGVGAPVIGEIDGEYRHD 180

Query: 233 ARKNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKIFIEKLFLL 292
           +R+N L W L +ID+ NKSG+LEFS  +   +DFFP+QVSF   ++Y NI++        
Sbjct: 181 SRRNLLEWCLPVIDAKNKSGSLEFSI-AGQPNDFFPVQVSFVSKKNYCNIQV-------- 231

Query: 293 HCTPNVTECDGD 304
                VT+ DG+
Sbjct: 232 ---TKVTQVDGN 240

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota
>gi|332018213|gb|EGI58818.1| Coatomer subunit delta [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307198423|gb|EFN79365.1| Coatomer subunit delta [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|66551478|ref|XP_624725.1| PREDICTED: coatomer subunit delta isoform 2 [Apis mellifera] Back     alignment and taxonomy information
>gi|380014779|ref|XP_003691395.1| PREDICTED: coatomer subunit delta-like [Apis florea] Back     alignment and taxonomy information
>gi|383850756|ref|XP_003700942.1| PREDICTED: coatomer subunit delta-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|350398649|ref|XP_003485262.1| PREDICTED: coatomer subunit delta-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340710005|ref|XP_003393589.1| PREDICTED: coatomer subunit delta-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|157135042|ref|XP_001663404.1| coatomer delta subunit [Aedes aegypti] gi|108870310|gb|EAT34535.1| AAEL013230-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|158289783|ref|XP_311433.4| AGAP010719-PA [Anopheles gambiae str. PEST] gi|157018493|gb|EAA07068.4| AGAP010719-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
FB|FBgn0028969532 deltaCOP "delta-coatomer prote 0.428 0.289 0.610 1.3e-84
MGI|MGI:2387591511 Arcn1 "archain 1" [Mus musculu 0.428 0.301 0.547 4.6e-78
RGD|1359110511 Arcn1 "archain 1" [Rattus norv 0.428 0.301 0.547 4.6e-78
UNIPROTKB|P53619511 ARCN1 "Coatomer subunit delta" 0.428 0.301 0.541 2e-77
UNIPROTKB|B0YIW6552 ARCN1 "Archain 1, isoform CRA_ 0.428 0.278 0.541 2e-77
UNIPROTKB|P48444511 ARCN1 "Coatomer subunit delta" 0.428 0.301 0.541 2e-77
UNIPROTKB|F1PRT4511 ARCN1 "Uncharacterized protein 0.428 0.301 0.541 2.5e-77
UNIPROTKB|I3LBY0511 ARCN1 "Uncharacterized protein 0.428 0.301 0.541 2.5e-77
ZFIN|ZDB-GENE-040121-7512 arcn1b "archain 1b" [Danio rer 0.431 0.302 0.544 4.1e-77
UNIPROTKB|Q5ZL57510 ARCN1 "Coatomer subunit delta" 0.428 0.301 0.528 1.1e-76
FB|FBgn0028969 deltaCOP "delta-coatomer protein" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 519 (187.8 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
 Identities = 94/154 (61%), Positives = 112/154 (72%)

Query:   129 THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSG 188
             THPNVDKELFKS+T IGLKN  KPFPLN D+GVLKWRF S DES +PL+INCWPSDNG G
Sbjct:   349 THPNVDKELFKSRTTIGLKNLGKPFPLNTDVGVLKWRFVSQDESAVPLTINCWPSDNGEG 408

Query:   189 GCDVNIXXXXXXXXXXLNQVTISIPLPLHCTPNVTECDGDYNYDARKNTLTWSLALIDSS 248
             GCDVNI          L  V I IPLP++  P+V E DG YNYD+RK+ L W + +ID++
Sbjct:   409 GCDVNIEYELEAQQLELQDVAIVIPLPMNVQPSVAEYDGTYNYDSRKHVLQWHIPIIDAA 468

Query:   249 NKSGALEFSAPSASQSDFFPLQVSFSCNQSYANI 282
             NKSG++EFS  ++   DFFPLQVSF     YA +
Sbjct:   469 NKSGSMEFSCSASIPGDFFPLQVSFVSKTPYAGV 502
GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISS
GO:0030126 "COPI vesicle coat" evidence=ISS;NAS
GO:0030131 "clathrin adaptor complex" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0006911 "phagocytosis, engulfment" evidence=IMP
GO:0010883 "regulation of lipid storage" evidence=IDA
GO:0009306 "protein secretion" evidence=IMP
GO:0007436 "larval salivary gland morphogenesis" evidence=IMP
GO:0035158 "regulation of tube diameter, open tracheal system" evidence=IMP
MGI|MGI:2387591 Arcn1 "archain 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1359110 Arcn1 "archain 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P53619 ARCN1 "Coatomer subunit delta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|B0YIW6 ARCN1 "Archain 1, isoform CRA_a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P48444 ARCN1 "Coatomer subunit delta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PRT4 ARCN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3LBY0 ARCN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040121-7 arcn1b "archain 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZL57 ARCN1 "Coatomer subunit delta" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q66H80COPD_RATNo assigned EC number0.53670.45400.3189yesN/A
Q5ZL57COPD_CHICKNo assigned EC number0.52540.45400.3196yesN/A
Q5RA77COPD_PONABNo assigned EC number0.53100.45400.3189yesN/A
P48444COPD_HUMANNo assigned EC number0.53100.45400.3189yesN/A
P53619COPD_BOVINNo assigned EC number0.53100.45400.3189yesN/A
Q5XJY5COPD_MOUSENo assigned EC number0.53670.45400.3189yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
cd09254232 cd09254, AP_delta-COPI_MHD, Mu homology domain (MH 9e-75
cd07954239 cd07954, AP_MHD_Cterm, C-terminal domain of adapto 7e-21
cd09254232 cd09254, AP_delta-COPI_MHD, Mu homology domain (MH 9e-20
pfam00928228 pfam00928, Adap_comp_sub, Adaptor complexes medium 2e-06
pfam00928228 pfam00928, Adap_comp_sub, Adaptor complexes medium 2e-05
cd09252248 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medi 7e-05
cd07954239 cd07954, AP_MHD_Cterm, C-terminal domain of adapto 0.001
>gnl|CDD|211365 cd09254, AP_delta-COPI_MHD, Mu homology domain (MHD) of adaptor protein (AP) coat protein I (COPI) delta subunit Back     alignment and domain information 
 Score =  230 bits (589), Expect = 9e-75
 Identities = 90/156 (57%), Positives = 117/156 (75%), Gaps = 1/156 (0%)

Query: 129 THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSG 188
           THPNVDK+LF S + +GLK+PSKPFP+N+ +GVLKWR  S DES LPL+INCWPS++G G
Sbjct: 58  THPNVDKKLFTSDSVLGLKDPSKPFPVNDPVGVLKWRLQSKDESLLPLTINCWPSESG-G 116

Query: 189 GCDVNIEYELEHEEKELNQVTISIPLPLHCTPNVTECDGDYNYDARKNTLTWSLALIDSS 248
           G DV IEYEL  ++ ELN V ISIPLP    P V   DG+Y YD RKN L W + LID+S
Sbjct: 117 GTDVTIEYELNRDDLELNDVVISIPLPSGSAPVVNSDDGEYEYDGRKNGLIWKIPLIDAS 176

Query: 249 NKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKI 284
           N SG+LEFS  ++ + DFFP+ VSF+ ++++  +K+
Sbjct: 177 NSSGSLEFSIAASDEDDFFPISVSFTSSKTFCGVKV 212

COPI complex-coated vesicles function in the early secretory pathway. They mediate the retrograde transport from the Golgi to the ER, and intra-Golgi transport. COPI complex-coated vesicles consist of a small GTPase, ADP-ribosylation factor 1 (ARF1) and a heteroheptameric coatomer composed of two subcomplexes, F-COPI and B-COPI. ARF1 regulates COPI vesicle formation by recruiting the coatomer onto Golgi membranes to initiate its coat function. Coatomer complexes then bind cargo molecules and self-assemble to form spherical cages that yield COPI-coated vesicles. The heterotetrameric F-COPI subcomplex contains beta-, gamma-, delta-, and zeta-COP subunits, where beta- and gamma-COP subunits are related to the large AP subunits, and delta- and zeta-COP subunits are related to the medium and small AP subunits, respectively. Due to the sequence similarity to the AP complexes, the F-COPI subcomplex might play a role in the cargo-binding. The heterotrimeric B-COPI contains alpha-, beta-, and epsilon-COP subunits, which are not related to the adaptins. This subcomplex is thought to participate in the cage-forming and might serve a function similar to that of clathrin. This family corresponds to the mu homology domain of delta-subunit of COPI complex (delta-COP), which is distantly related to the C-terminal domain of mu chains among AP complexes. The delta-COP subunit appears tightly associated with the beta-COP subunit to confer its interaction with ARF1. In addition, both delta- and beta-COP subunits contribute to a common binding site for arginine (R)-based signals, which are sorting motifs conferring transient endoplasmic reticulum (ER) localization to unassembled subunits of multimeric membrane proteins. Length = 232
>gnl|CDD|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD) Back     alignment and domain information
>gnl|CDD|211365 cd09254, AP_delta-COPI_MHD, Mu homology domain (MHD) of adaptor protein (AP) coat protein I (COPI) delta subunit Back     alignment and domain information
>gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family Back     alignment and domain information
>gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family Back     alignment and domain information
>gnl|CDD|211363 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medium Mu3 subunit in adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 359
KOG2635|consensus512 100.0
KOG0937|consensus424 100.0
KOG0938|consensus446 100.0
KOG2635|consensus512 99.87
PF00928262 Adap_comp_sub: Adaptor complexes medium subunit fa 99.86
KOG2740|consensus418 99.75
KOG0937|consensus424 99.73
KOG0938|consensus446 99.63
PF00928262 Adap_comp_sub: Adaptor complexes medium subunit fa 99.55
PF01217141 Clat_adaptor_s: Clathrin adaptor complex small cha 99.39
KOG2677|consensus922 97.88
PF10291257 muHD: Muniscin C-terminal mu homology domain; Inte 97.46
KOG2740|consensus418 97.12
COG5030152 APS2 Clathrin adaptor complex, small subunit [Intr 96.33
PF03164415 Mon1: Trafficking protein Mon1; InterPro: IPR00435 95.64
PF10291257 muHD: Muniscin C-terminal mu homology domain; Inte 93.45
KOG0934|consensus145 92.96
KOG0936|consensus182 89.89
PF08923119 MAPKK1_Int: Mitogen-activated protein kinase kinas 89.56
KOG0935|consensus143 87.06
>KOG2635|consensus Back     alignment and domain information 
Probab=100.00  E-value=5.6e-69  Score=520.90  Aligned_cols=248  Identities=63%  Similarity=1.027  Sum_probs=237.4

Q ss_pred             eeeeeceeEEEeecCCceeEEeecccccchhHHHHHHhhhhhhhcCCCccceEEeCCEEEEEEEcCCEEEEEEecCCccH
Q psy16332         36 SVNLAQEATKIKLKNIKIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNI  115 (359)
Q Consensus        36 ~~~~~~s~~~i~~~~Gk~~LisRq~rdi~r~~ie~~l~~F~~li~~~~~~t~ve~~~vryvY~~~~~lYl~~iT~~nsNi  115 (359)
                      ||+|||   +||+++|| ++||||||||+|+|||+||++||+|+..++||||||+++|||||||+|+||++|||+|+|||
T Consensus         1 Mvvlaa---~i~t~~Gk-~ivsRqf~~Msr~RIEgLl~aFpkLv~~~~qhT~vEt~~VRYVYqP~d~lY~vLITtk~SNI   76 (512)
T KOG2635|consen    1 MVVLAA---SINTKTGK-AIVSRQFREMSRSRIEGLLAAFPKLVSAGKQHTFVETDSVRYVYQPLDNLYIVLITTKQSNI   76 (512)
T ss_pred             CeEEEE---EEeecCCc-eeeehHhHhhhHHHHHHHHHHhHHhhccCCCccEEecccEEEEEEecccEEEEEEeccccch
Confidence            899999   99999999 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhc-------------------------------------------------------------------
Q psy16332        116 LEDLETLRLFSRV-------------------------------------------------------------------  128 (359)
Q Consensus       116 ~~~l~~L~~l~~v-------------------------------------------------------------------  128 (359)
                      ++||+|||+|+++                                                                   
T Consensus        77 leDl~TL~Lfskvipey~~slde~eI~~~~FelifAFDEivsLGyre~v~laQikty~eMdSHEEKi~e~v~~nke~ea~  156 (512)
T KOG2635|consen   77 LEDLETLRLFSKVIPEYCSSLDEKEILENAFELIFAFDEIVSLGYRENVNLAQIKTYLEMDSHEEKIHELVMRNKEREAK  156 (512)
T ss_pred             hhHHHHHHHHHHhchhhhhhhhHHHHHHhhhhhhhccchhhhhcccccccHHHhhhhhccccHHHHHHHHHHHhhhHHHH
Confidence            9999999999999                                                                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy16332        129 --------------------------------------------------------------------------------  128 (359)
Q Consensus       129 --------------------------------------------------------------------------------  128 (359)
                                                                                                      
T Consensus       157 q~mkrKaKElqr~r~ea~rrgg~~~~~~~~~~s~g~~~~s~~~~~~~~~~~~~~~~~~sa~~~~s~pak~mklG~k~~~s  236 (512)
T KOG2635|consen  157 QEMKRKAKELQRARKEAERRGGSLNPGFDAIGSSGYSSVSTTNAINRVESIAQKPKQQSAAKASSAPAKAMKLGKKTKNS  236 (512)
T ss_pred             HHHHHHHHHHHHHHHhhhccccccCCCccccccccccCCcccchhhccccccccccccccccCCCCCchhhhhcccccch
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy16332        129 --------------------------------------------------------------------------------  128 (359)
Q Consensus       129 --------------------------------------------------------------------------------  128 (359)
                                                                                                      
T Consensus       237 ~~~~d~Lk~ege~ia~~~s~~g~~s~aap~~~~p~v~~e~v~i~ieEkln~~~~RDGgi~s~E~qG~lsLrI~d~e~~~i  316 (512)
T KOG2635|consen  237 DTFVDKLKGEGERIAGASSAIGSASSAAPPPTAPDVPEESVHIVIEEKLNVRLSRDGGIKSGEVQGTLSLRIKDEEYGDI  316 (512)
T ss_pred             hhHHHHhhccccccccccccccccccCCCCCCCCCCccceEEEEEeeeEeEEEcccCCccceeeeeeEEEEEccccccce
Confidence                                                                                            


Q ss_pred             ---------------cCcccchhhhccccEEEecCCCCCCCCCCCeeeEEEeecCCCCcccceEEEEeeCCCCCCceEEE
Q psy16332        129 ---------------THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVN  193 (359)
Q Consensus       129 ---------------tHP~VdK~~f~~~~ii~~k~~~k~Fp~~~~~gvlkWR~~~~~e~~lPlsV~~w~s~~~~~~~~v~  193 (359)
                                     ||||+||+.|.++++|++|+|+|+||+|+.+|+||||+...+++++||++|||||++++| ++|+
T Consensus       317 ~lkl~n~~~~g~q~ktHPNlDK~~f~s~s~iglk~~~K~FPvn~~VGvLkWR~~~~des~iPlTincWPSes~~g-~dV~  395 (512)
T KOG2635|consen  317 ELKLANGRDKGTQLKTHPNLDKKVFLSSSLIGLKRPEKPFPVNSDVGVLKWRMVDEDESEIPLTINCWPSESGNG-YDVN  395 (512)
T ss_pred             EEEEcCCCCcceeeeeCCCcchhhhccccccccccCCCCCCcCCcceEEEEeecccccccCceEEEeccccCCCC-eEEE
Confidence                           899999999999999999999999999999999999999999999999999999999965 9999


Q ss_pred             EEEEEecCccceeeeEEEeeCCCCCCCceeeCCceEEEeCCCCeEEEEEeeecCCCceeEEEEEeecCCCCCcccEEEEE
Q psy16332        194 IEYELEHEEKELNQVTISIPLPLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSF  273 (359)
Q Consensus       194 iEye~~~~~~~l~dV~i~IPlp~~~~~~v~~~dG~~~~d~~~~~L~W~I~~id~~~~sgsleFsv~~~d~d~~fPI~V~F  273 (359)
                      ||||+. ...+|+||.|.||||....|.+.++||+|.|+++..++.|+|+.| .+|.+|++||+|++.+.++|||++|.|
T Consensus       396 iEYe~~-~~~eL~dV~i~iPlP~~iapsv~~~Dge~~~~~~~~~leW~I~~I-a~N~SGslEFs~~~~~~~~fFPl~VsF  473 (512)
T KOG2635|consen  396 IEYEAV-LECELNDVIITIPLPANIAPSVGECDGEYRYDERKNVLEWSIGVI-AKNFSGSLEFSCPASDPDGFFPLSVSF  473 (512)
T ss_pred             EEEeeh-hcccccceEEEeecccccCCccceecceEEeccccceeEEEeeee-ccCCCCcEEEeecCCCCCceeeEEEEE
Confidence            999994 337899999999999877999999999999999999999999999 459999999999999999999999999


Q ss_pred             EeccceeeeEEEEeecc
Q psy16332        274 SCNQSYANIKIFIEKLF  290 (359)
Q Consensus       274 ~~~~s~s~v~V~iP~~~  290 (359)
                      .+...++++.|.--+..
T Consensus       474 ~s~~~ftgl~vqkVv~~  490 (512)
T KOG2635|consen  474 TSDTVFTGLFVQKVVRN  490 (512)
T ss_pred             EecccccceEEEEEEEc
Confidence            99999999999766544

>KOG0937|consensus Back     alignment and domain information
>KOG0938|consensus Back     alignment and domain information
>KOG2635|consensus Back     alignment and domain information
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2740|consensus Back     alignment and domain information
>KOG0937|consensus Back     alignment and domain information
>KOG0938|consensus Back     alignment and domain information
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2677|consensus Back     alignment and domain information
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans Back     alignment and domain information
>KOG2740|consensus Back     alignment and domain information
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain Back     alignment and domain information
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans Back     alignment and domain information
>KOG0934|consensus Back     alignment and domain information
>KOG0936|consensus Back     alignment and domain information
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>KOG0935|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 8e-16
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 4e-15
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 2e-14
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 1e-08
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 1e-13
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 6e-13
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 2e-11
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 4e-11
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 4e-05
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Length = 314 Back     alignment and structure
 Score = 76.1 bits (186), Expect = 8e-16
 Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 14/161 (8%)

Query: 130 HPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGG 189
           H  V    F S+  I    P   F L         R+ +T +  LP  +     + G   
Sbjct: 128 HQCVRLSKFDSERSISFIPPDGEFEL--------MRYRTTKDIILPFRVIPLVREVGRTK 179

Query: 190 CDVNIEYELE-HEEKELNQVTISIPLPLHCT-PNVTECDGDYNYDARKNTLTWSLALIDS 247
            +V +  +          ++ + IP PL+ +   V    G   Y A +N + W +  +  
Sbjct: 180 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 239

Query: 248 SNK---SGALEFSAPSASQSD-FFPLQVSFSCNQSYANIKI 284
             +   S  +E    +  +     P+ ++F    + + +K+
Sbjct: 240 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKV 280
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Length = 301 Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423 Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423 Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385 Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Length = 266 Back     alignment and structure
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 100.0
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 100.0
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 99.93
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 99.92
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 99.92
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 99.91
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 99.79
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 99.73
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 99.7
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 99.69
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 99.69
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 99.68
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 99.68
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 99.66
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 99.21
3g9h_A328 Suppressor of yeast profilin deletion; SYP1, MU, a 96.64
3cpt_A143 Mitogen-activated protein kinase kinase 1- interac 89.56
3g9h_A328 Suppressor of yeast profilin deletion; SYP1, MU, a 80.8
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
Probab=100.00  E-value=3e-39  Score=325.45  Aligned_cols=253  Identities=17%  Similarity=0.259  Sum_probs=202.6

Q ss_pred             eceeEEEeecCCceeEEeeccc-ccchhHHHHHHhhhhhhhcC---CCccceEEeCCEEEEEEEcCCEEEEEEecCCccH
Q psy16332         40 AQEATKIKLKNIKIAIVSRQFV-EMTRARIEGLLAAFPKLMSS---GKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNI  115 (359)
Q Consensus        40 ~~s~~~i~~~~Gk~~LisRq~r-di~r~~ie~~l~~F~~li~~---~~~~t~ve~~~vryvY~~~~~lYl~~iT~~nsNi  115 (359)
                      |++|++|+|++|| ++|+|+|| +++|+.++    .|++++.+   ..+||+++.++++|+|+++++||++++|++|+|.
T Consensus         1 MI~~i~I~~~~Gk-~~l~k~y~~~~~~~~~~----~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~   75 (435)
T 2vgl_M            1 MIGGLFIYNHKGE-VLISRVYRDDIGRNAVD----AFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNA   75 (435)
T ss_dssp             CCCEEEEECTTCC-EEEEEECSSSCCHHHHH----HHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCH
T ss_pred             CeEEEEEECCCCC-EEEEEecCCCCChhHHH----HHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence            5689999999999 99999999 89987666    89998875   2688999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhc-------------------------------------------------------------------
Q psy16332        116 LEDLETLRLFSRV-------------------------------------------------------------------  128 (359)
Q Consensus       116 ~~~l~~L~~l~~v-------------------------------------------------------------------  128 (359)
                      +++|+|||+|+++                                                                   
T Consensus        76 l~~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~  155 (435)
T 2vgl_M           76 AMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQV  155 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcccccccccccccccccccccc
Confidence            9999999999999                                                                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy16332        129 --------------------------------------------------------------------------------  128 (359)
Q Consensus       129 --------------------------------------------------------------------------------  128 (359)
                                                                                                      
T Consensus       156 ~~~i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~  235 (435)
T 2vgl_M          156 TGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSK  235 (435)
T ss_dssp             ---CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC-------------
T ss_pred             ccccccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhcccccccccccccc
Confidence                                                                                            


Q ss_pred             ------------cCcccchhhhccccEEEecCCCCCCCCCCCeeeEEEeecCCCCcccceEEEEeeCCCCCCceEEEEEE
Q psy16332        129 ------------THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEY  196 (359)
Q Consensus       129 ------------tHP~VdK~~f~~~~ii~~k~~~k~Fp~~~~~gvlkWR~~~~~e~~lPlsV~~w~s~~~~~~~~v~iEy  196 (359)
                                  ||||||+++|+++++|+|+||||+|++      |+||+.+.  ..+|++|+||++..|+  +++.+++
T Consensus       236 ~~~~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~L------m~Yr~~~~--~~~P~~i~~~~~~~~~--~~ve~~l  305 (435)
T 2vgl_M          236 SGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFEL------MRYRTTKD--IILPFRVIPLVREVGR--TKLEVKV  305 (435)
T ss_dssp             ----CCCCCEEEECTTEEEC-----CCEEECCCSEEEEE------EEEEECSS--CCCSEEEEEEEECCTT--TEEEEEE
T ss_pred             cccCceEccccccceeecHhHhccCceEEEECCCCcEEE------EEEEecCC--cCCCeEEEEEEEecCC--CEEEEEE
Confidence                        299999999999999999999999976      99999863  5689999999997653  3443444


Q ss_pred             EEecCc---cceeeeEEEeeCCCC-CCCceeeCCceEEEeCCCCeEEEEEeeecCCC---ceeEEEEEeec-CCCCCccc
Q psy16332        197 ELEHEE---KELNQVTISIPLPLH-CTPNVTECDGDYNYDARKNTLTWSLALIDSSN---KSGALEFSAPS-ASQSDFFP  268 (359)
Q Consensus       197 e~~~~~---~~l~dV~i~IPlp~~-~~~~v~~~dG~~~~d~~~~~L~W~I~~id~~~---~sgsleFsv~~-~d~d~~fP  268 (359)
                      .++..+   ..++||.|.||+|+. ..+.+.+.+|+++|++..+.+.|+|++++++.   -+|+++|.... .+++.++|
T Consensus       306 ~~~~~~~~~~~~~~V~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~~~~~~~~~p  385 (435)
T 2vgl_M          306 VIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPP  385 (435)
T ss_dssp             EEEECSCTTSEEEEEEEEEECCSSCCCEEEEESSSEEEEETTTTEEEEEEEEEETTCEEEEEEEEECCCCSCSCCCCCCC
T ss_pred             EEeCCCCCCceeeEEEEEEECCCCCCCceEEecceeEEEccCCCEEEEEeccCCCCCCEEEEEEEEecCCCcCcccCCCc
Confidence            443332   469999999999984 58888999999999999999999999998741   13555553322 34567999


Q ss_pred             EEEEEEeccceeeeEEEEeeccc-------ccCCCceeee--cceEEE
Q psy16332        269 LQVSFSCNQSYANIKIFIEKLFL-------LHCTPNVTEC--DGDYNY  307 (359)
Q Consensus       269 I~V~F~~~~s~s~v~V~iP~~~~-------~~~~P~V~~~--dG~y~y  307 (359)
                      |+|+|+++.+++|++|..=+..-       -...++|++.  .|+|++
T Consensus       386 i~v~F~i~~t~Sgl~V~~l~v~~~~~~~~~y~~~kwVrY~t~sg~y~~  433 (435)
T 2vgl_M          386 ISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYET  433 (435)
T ss_dssp             EEEEEEESSCTTCCCEEEEEEECSSSSCBGGGSEEEEEEEEEEEEEEE
T ss_pred             EEEEEEEEecccccEEEEEEEeccccccCCCCCcCceEEEEeCCeEEE
Confidence            99999999999999988754321       1235777765  466654
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Back     alignment and structure
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Back     alignment and structure
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A Back     alignment and structure
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 359
d2pr9a1277 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin s 2e-23
d2vgls_142 d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem 1e-09
d2vglm2141 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass 3e-06
d2vglm2141 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass 0.002
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 277 Back     information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 96.3 bits (239), Expect = 2e-23
 Identities = 33/182 (18%), Positives = 64/182 (35%), Gaps = 22/182 (12%)

Query: 109 TTKTSNILEDLETLRLFSRVTHPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTS 168
           + K S  ++D           H  V    F S+  I    P   F L         R+ +
Sbjct: 78  SGKQSIAIDDCTF--------HQCVRLSKFDSERSISFIPPDGEFEL--------MRYRT 121

Query: 169 TDESCLPLSINCWPSDNGSGGCDVNIEYELEHEEK-ELNQVTISIPLPLHCT-PNVTECD 226
           T +  LP  +     + G    +V +  +   +      ++ + IP PL+ +   V    
Sbjct: 122 TKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMK 181

Query: 227 GDYNYDARKNTLTWSLALID---SSNKSGALEF-SAPSASQSDFFPLQVSFSCNQSYANI 282
           G   Y A +N + W +  +     S  S  +E        +    P+ ++F    + + +
Sbjct: 182 GKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGL 241

Query: 283 KI 284
           K+
Sbjct: 242 KV 243

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
d2pr9a1277 Second domain of Mu2 adaptin subunit (ap50) of ap2 99.83
d2vglm2141 Mu2 adaptin (clathrin coat assembly protein AP50) 99.7
d2vgls_142 Sigma2 adaptin (clathrin coat assembly protein AP1 99.59
d2pr9a1277 Second domain of Mu2 adaptin subunit (ap50) of ap2 99.55
d3cpta1116 MEK binding partner 1, MP1 {Human (Homo sapiens) [ 89.02
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=1.7e-20  Score=175.58  Aligned_cols=151  Identities=19%  Similarity=0.308  Sum_probs=117.2

Q ss_pred             cCcccchhhhccccEEEecCCCCCCCCCCCeeeEEEeecCCCCcccceEEEEeeCCCCCCceEEEEEEEEecC-ccceee
Q psy16332        129 THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEHE-EKELNQ  207 (359)
Q Consensus       129 tHP~VdK~~f~~~~ii~~k~~~k~Fp~~~~~gvlkWR~~~~~e~~lPlsV~~w~s~~~~~~~~v~iEye~~~~-~~~l~d  207 (359)
                      ||||||++.|+++++|+|+||||.|++      |+||...  +..+|+.+.+|+...++++.++.++++.... ...++|
T Consensus        90 fH~cV~~~~f~~~~~i~F~PPdG~F~L------m~Y~~~~--~~~~P~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~  161 (277)
T d2pr9a1          90 FHQCVRLSKFDSERSISFIPPDGEFEL------MRYRTTK--DIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQK  161 (277)
T ss_dssp             ECTTSBCC-----CCEEECCCSEEEEE------EEEEECS--SCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEEE
T ss_pred             eeeccccccccccceEeecCCCCcEEE------EEEEcCC--CcCCCcEEEEEEEeccCcEEEEEEEEEeccCCCeeeeE
Confidence            899999999999999999999999987      9999875  4458999999998766556777777776432 357999


Q ss_pred             eEEEeeCCCC-CCCceeeCCceEEEeCCCCeEEEEEeeecCCCc-eeEEEEEeecC---CCCCcccEEEEEEeccceeee
Q psy16332        208 VTISIPLPLH-CTPNVTECDGDYNYDARKNTLTWSLALIDSSNK-SGALEFSAPSA---SQSDFFPLQVSFSCNQSYANI  282 (359)
Q Consensus       208 V~i~IPlp~~-~~~~v~~~dG~~~~d~~~~~L~W~I~~id~~~~-sgsleFsv~~~---d~d~~fPI~V~F~~~~s~s~v  282 (359)
                      |.|.||+|+. ..+.+.+..|+++|+...+.+.|+|+++++++. +.+.+++....   ....++||+|+|+++.+++|+
T Consensus       162 v~I~iP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~k~~~~~~~~l~~~~~~~~~~~~~~~~~~pi~v~F~ip~t~Sgl  241 (277)
T d2pr9a1         162 IEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGL  241 (277)
T ss_dssp             EEEEEECCTTEEEEEEEESSSEEEEEGGGTEEEEEEEEEETTCEEEEEEEEEECCCCSSSCCCCCCEEEEEEESSCTTCC
T ss_pred             EEEEeeCCCcccCceEEecCceEEEeccCCEEEEecccccCCccceEEEEEEeccCCCCccccCCcEEEEEEecccccce
Confidence            9999999984 467788899999999999999999999986432 33444444322   234588999999998888998


Q ss_pred             EEEEe
Q psy16332        283 KIFIE  287 (359)
Q Consensus       283 ~V~iP  287 (359)
                      +|..=
T Consensus       242 ~V~~l  246 (277)
T d2pr9a1         242 KVRYL  246 (277)
T ss_dssp             CEEEE
T ss_pred             EEEEE
Confidence            88654
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure