Psyllid ID: psy16431

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQDVLKKFMEQHPEMDFSNCKFG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHcccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MEKINKMEWWSKLvttdpeintkkinpepsklsdldgeTRGLVEKMMYDQrqkemglptsdeQKKQDVLKKFMEqhpemdfsnckfg
Flexible Loop (DISEMBL)
mekinkmewwsklvttdpeintkkinpepsklsdldgETRGLVEKMMYDQrqkemglptsdeqkKQDVLKKFMeqhpemdfsnckfg
Low Complexity Region (SEG)
MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQDVLKKFMEQHPEMDFSNCKFG
Disordered region (IsUnstruct)
********WWSKLV*************************************************************************
Disordered Region (DISOPRED)
*EKINKMEWWSKLVTTDPEINTKKINP**********ETRGLVEKM*************************FMEQHPEMDFSNCKF*
Disordered Region (DISEMBL)
MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQDVLKKFMEQHPEMDFSNCKFG
Disordered Region (DISPRO)
****NKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQDVLKKFMEQHPE*DFSN****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQDVLKKFMEQHPEMDFSNCKFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	87	2.2.26 [Sep-21-2011]
Q5ZIN1	341	Nuclear migration protein	yes	N/A	0.988	0.252	0.872	4e-39
Q63525	332	Nuclear migration protein	yes	N/A	0.988	0.259	0.837	5e-38
O35685	332	Nuclear migration protein	yes	N/A	0.988	0.259	0.837	5e-38
Q9Y266	331	Nuclear migration protein	yes	N/A	0.988	0.259	0.837	5e-38
Q17QG2	332	Nuclear migration protein	yes	N/A	0.988	0.259	0.825	7e-38
P17624	198	Nuclear movement protein	yes	N/A	1.0	0.439	0.701	1e-32
Q9LV09	304	Protein BOBBER 1 OS=Arabi	yes	N/A	0.988	0.282	0.651	3e-27
Q9STN7	293	Protein BOBBER 2 OS=Arabi	no	N/A	0.988	0.293	0.639	3e-25
Q54M64	171	Nuclear movement protein	yes	N/A	0.977	0.497	0.505	6e-21
O60166	166	Nuclear movement protein	yes	N/A	0.919	0.481	0.576	2e-20

>sp|Q5ZIN1|NUDC_CHICK Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1

 Score =  159 bits (403), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 75/86 (87%), Positives = 80/86 (93%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
           +EKINKMEWW+KLV+TDPEINTKKINPE SKLSDLD ETR +VEKMMYDQRQK MGLPTS
Sbjct: 255 LEKINKMEWWNKLVSTDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTS 314

Query: 61  DEQKKQDVLKKFMEQHPEMDFSNCKF 86
           DEQKKQD+LKKFMEQHPEMDFS  KF
Sbjct: 315 DEQKKQDILKKFMEQHPEMDFSKAKF 340

Plays a role in neurogenesis and neuronal migration. Necessary for correct formation of mitotic spindles and chromosome separation during mitosis. Necessary for cytokinesis and cell proliferation.
Gallus gallus (taxid: 9031)

>sp|Q63525|NUDC_RAT Nuclear migration protein nudC OS=Rattus norvegicus GN=Nudc PE=1 SV=1

 Score =  155 bits (393), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 72/86 (83%), Positives = 80/86 (93%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
           +EKINKMEWW++LVT+DPEINTKKINPE SKLSDLD ETR +VEKMMYDQRQK MGLPTS
Sbjct: 246 LEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTS 305

Query: 61  DEQKKQDVLKKFMEQHPEMDFSNCKF 86
           DEQKKQ++LKKFM+QHPEMDFS  KF
Sbjct: 306 DEQKKQEILKKFMDQHPEMDFSKAKF 331

Plays a role in neurogenesis and neuronal migration. Necessary for correct formation of mitotic spindles and chromosome separation during mitosis.

Rattus norvegicus (taxid: 10116)

>sp|O35685|NUDC_MOUSE Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1

 Score =  155 bits (393), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 72/86 (83%), Positives = 80/86 (93%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
           +EKINKMEWW++LVT+DPEINTKKINPE SKLSDLD ETR +VEKMMYDQRQK MGLPTS
Sbjct: 246 LEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTS 305

Query: 61  DEQKKQDVLKKFMEQHPEMDFSNCKF 86
           DEQKKQ++LKKFM+QHPEMDFS  KF
Sbjct: 306 DEQKKQEILKKFMDQHPEMDFSKAKF 331

Plays a role in neurogenesis and neuronal migration. Necessary for correct formation of mitotic spindles and chromosome separation during mitosis.

Mus musculus (taxid: 10090)

>sp|Q9Y266|NUDC_HUMAN Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1

 Score =  155 bits (393), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 72/86 (83%), Positives = 80/86 (93%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
           +EKINKMEWWS+LV++DPEINTKKINPE SKLSDLD ETR +VEKMMYDQRQK MGLPTS
Sbjct: 245 LEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTS 304

Query: 61  DEQKKQDVLKKFMEQHPEMDFSNCKF 86
           DEQKKQ++LKKFM+QHPEMDFS  KF
Sbjct: 305 DEQKKQEILKKFMDQHPEMDFSKAKF 330

Plays a role in neurogenesis and neuronal migration (By similarity). Necessary for correct formation of mitotic spindles and chromosome separation during mitosis. Necessary for cytokinesis and cell proliferation.

Homo sapiens (taxid: 9606)

>sp|Q17QG2|NUDC_BOVIN Nuclear migration protein nudC OS=Bos taurus GN=NUDC PE=2 SV=1

 Score =  155 bits (392), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 71/86 (82%), Positives = 80/86 (93%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
           +EKINKMEWWS+LV++DPEINTKKINPE SKLSDLD ETR +VEKMMYDQRQK MGLPTS
Sbjct: 246 LEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTS 305

Query: 61  DEQKKQDVLKKFMEQHPEMDFSNCKF 86
           DEQKKQ++LKKFM+QHPEMDFS  +F
Sbjct: 306 DEQKKQEILKKFMDQHPEMDFSKARF 331

Plays a role in neurogenesis and neuronal migration. Necessary for correct formation of mitotic spindles and chromosome separation during mitosis.

Bos taurus (taxid: 9913)

>sp|P17624|NUDC_EMENI Nuclear movement protein nudC OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nudC PE=3 SV=1

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 61/87 (70%), Positives = 74/87 (85%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
           ++K+N+MEWW+ +VTT P+I+  KI PE S LSDLDGETR +VEKMMYDQRQKEMG PTS
Sbjct: 112 LDKVNQMEWWAHVVTTAPKIDVSKITPENSSLSDLDGETRAMVEKMMYDQRQKEMGAPTS 171

Query: 61  DEQKKQDVLKKFMEQHPEMDFSNCKFG 87
           DEQ+K D+LKKF ++HPEMDFSN K G
Sbjct: 172 DEQRKMDILKKFQKEHPEMDFSNAKIG 198

Required for nuclear movement. May interact between microtubules and nuclei and/or may be involved in the generation of force used to move nuclei during interphase.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q9LV09|BOB1_ARATH Protein BOBBER 1 OS=Arabidopsis thaliana GN=BOB1 PE=1 SV=1

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 70/86 (81%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
           + K ++MEWW   V  +PEI+T+K+ PE SKL DLD ETR  VEKMM+DQRQK+MGLPTS
Sbjct: 218 LTKSDQMEWWKCCVKGEPEIDTQKVEPETSKLGDLDPETRSTVEKMMFDQRQKQMGLPTS 277

Query: 61  DEQKKQDVLKKFMEQHPEMDFSNCKF 86
           +E +KQ++LKKFM +HPEMDFSN KF
Sbjct: 278 EELQKQEILKKFMSEHPEMDFSNAKF 303

Small heat shock protein required for the establishment of auxin gradients and for patterning of the apical domain of the embryo. Involved in the specification of the cotyledon primordia. Also required for normal inflorescence and floral meristem function, normal developmental patterning and thermotolerance. Acts as a molecular chaperone.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STN7|BOB2_ARATH Protein BOBBER 2 OS=Arabidopsis thaliana GN=BOB2 PE=2 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 68/86 (79%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
           + K ++MEWW   V  +PEI+T+K+ PE SKL DLD ETR  VEKMM+DQRQK+MGLP S
Sbjct: 207 LTKQDQMEWWKYCVKGEPEIDTQKVEPETSKLGDLDPETRASVEKMMFDQRQKQMGLPRS 266

Query: 61  DEQKKQDVLKKFMEQHPEMDFSNCKF 86
           DE +K+D+LKKFM Q+P MDFSN KF
Sbjct: 267 DEIEKKDMLKKFMAQNPGMDFSNAKF 292

Small heat shock protein required for the establishment of auxin gradients and for patterning of the apical domain of the embryo. Involved in the specification of the cotyledon primordia. Also required for normal inflorescence and floral meristem function, normal developmental patterning and thermotolerance. Acts as a molecular chaperone.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54M64|NUDC_DICDI Nuclear movement protein nudC OS=Dictyostelium discoideum GN=nudc PE=3 SV=1

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 61/85 (71%)

Query: 3   KINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDE 62
           K+   EWWS ++  + EI+  +I P+ S LSD DGETR +VEKM+Y+Q +K  GLPT+DE
Sbjct: 87  KLKGQEWWSCIIQGESEIDVTQIKPQNSSLSDFDGETRAMVEKMLYNQNRKAQGLPTTDE 146

Query: 63  QKKQDVLKKFMEQHPEMDFSNCKFG 87
           ++KQ + + F  +HP+MDFSN KF 
Sbjct: 147 EEKQRIFETFKNEHPDMDFSNAKFN 171

Required for nuclear movement. May interact between microtubules and nuclei and/or may be involved in the generation of force used to move nuclei during interphase.

Dictyostelium discoideum (taxid: 44689)

>sp|O60166|NUDC_SCHPO Nuclear movement protein nudc OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nudc PE=3 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/85 (57%), Positives = 61/85 (71%), Gaps = 5/85 (5%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
           +EK NKMEWWS ++   P I+   I PE SKLSDLD ETR  VEKMM +Q QK      +
Sbjct: 84  LEKSNKMEWWSCVIKGHPSIDIGSIEPENSKLSDLDEETRATVEKMMLEQSQKR-----T 138

Query: 61  DEQKKQDVLKKFMEQHPEMDFSNCK 85
           DEQK++DVL+ FM+QHPE+DFSN +
Sbjct: 139 DEQKRKDVLQNFMKQHPELDFSNVR 163

Required for nuclear movement. May interact between microtubules and nuclei and/or may be involved in the generation of force used to move nuclei during interphase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
427788061	321	Putative nuclear migration protein nudc	0.988	0.267	0.930	4e-42
346471963	323	hypothetical protein [Amblyomma maculatu	0.988	0.266	0.918	3e-41
321462148	331	hypothetical protein DAPPUDRAFT_307918 [	1.0	0.262	0.885	2e-40
357622463	325	nuclear migration protein nudC [Danaus p	0.988	0.264	0.906	4e-40
114052643	326	nuclear migration protein nudC [Bombyx m	0.988	0.263	0.895	1e-39
383862629	337	PREDICTED: nuclear migration protein nud	0.988	0.255	0.872	1e-39
241802023	327	nuclear distribution protein NUDC, putat	0.988	0.262	0.872	1e-39
189237899	321	PREDICTED: similar to nuclear migration	0.988	0.267	0.895	1e-39
156550364	337	PREDICTED: nuclear migration protein nud	0.988	0.255	0.860	2e-39
442761695	352	Putative nuclear distribution protein nu	0.988	0.244	0.872	2e-39

>gi|427788061|gb|JAA59482.1| Putative nuclear migration protein nudc [Rhipicephalus pulchellus]

 Score =  175 bits (443), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 80/86 (93%), Positives = 86/86 (100%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
           MEKINKMEWW++LVTTDPEINT+K+NPEPSKLSDLDGETRG+VEKMMYDQRQ+EMGLPTS
Sbjct: 235 MEKINKMEWWTRLVTTDPEINTRKVNPEPSKLSDLDGETRGMVEKMMYDQRQREMGLPTS 294

Query: 61  DEQKKQDVLKKFMEQHPEMDFSNCKF 86
           DEQKKQDVLKKFMEQHPEMDFSNCKF
Sbjct: 295 DEQKKQDVLKKFMEQHPEMDFSNCKF 320

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346471963|gb|AEO35826.1| hypothetical protein [Amblyomma maculatum]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 79/86 (91%), Positives = 84/86 (97%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
           MEK+NKMEWWS+LVTTDPEINTKK+NPE SKLSDLDGETRG+VEKMMYDQRQ+EMGLPTS
Sbjct: 237 MEKVNKMEWWSRLVTTDPEINTKKVNPETSKLSDLDGETRGMVEKMMYDQRQREMGLPTS 296

Query: 61  DEQKKQDVLKKFMEQHPEMDFSNCKF 86
           DEQKKQDVLKKFMEQHPEMDFS CKF
Sbjct: 297 DEQKKQDVLKKFMEQHPEMDFSKCKF 322

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321462148|gb|EFX73173.1| hypothetical protein DAPPUDRAFT_307918 [Daphnia pulex]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/87 (88%), Positives = 84/87 (96%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
           +EK+NKMEWWS+LV +DPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS
Sbjct: 245 LEKVNKMEWWSRLVVSDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 304

Query: 61  DEQKKQDVLKKFMEQHPEMDFSNCKFG 87
           +EQKKQD++KKFMEQHPEMDFS CKF 
Sbjct: 305 EEQKKQDMMKKFMEQHPEMDFSKCKFS 331

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357622463|gb|EHJ73933.1| nuclear migration protein nudC [Danaus plexippus]

 Score =  168 bits (426), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 78/86 (90%), Positives = 83/86 (96%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
           +EK+NKM WW +LVTTDPEI+T+KINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS
Sbjct: 239 LEKVNKMNWWGRLVTTDPEISTRKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 298

Query: 61  DEQKKQDVLKKFMEQHPEMDFSNCKF 86
           DEQKKQDVLKKFMEQHPEMDFS CKF
Sbjct: 299 DEQKKQDVLKKFMEQHPEMDFSKCKF 324

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114052643|ref|NP_001040262.1| nuclear migration protein nudC [Bombyx mori] gi|87248553|gb|ABD36329.1| nuclear migration protein nudC [Bombyx mori]

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/86 (89%), Positives = 83/86 (96%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
           +EK+NKM WW +LVTTDPEI+T+KINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS
Sbjct: 240 LEKVNKMNWWGRLVTTDPEISTRKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 299

Query: 61  DEQKKQDVLKKFMEQHPEMDFSNCKF 86
           DEQKKQ+VLKKFMEQHPEMDFS CKF
Sbjct: 300 DEQKKQEVLKKFMEQHPEMDFSKCKF 325

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862629|ref|XP_003706786.1| PREDICTED: nuclear migration protein nudC-like [Megachile rotundata]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/86 (87%), Positives = 83/86 (96%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
           +EK+NKM WW+ +VTTDPEI+TKK+NPEPSKLSDLDGETRGLVEKMMYDQRQKE+GLPTS
Sbjct: 251 LEKVNKMRWWAHVVTTDPEISTKKVNPEPSKLSDLDGETRGLVEKMMYDQRQKELGLPTS 310

Query: 61  DEQKKQDVLKKFMEQHPEMDFSNCKF 86
           DEQKKQDV+KKFMEQHPEMDFS CKF
Sbjct: 311 DEQKKQDVIKKFMEQHPEMDFSKCKF 336

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241802023|ref|XP_002414516.1| nuclear distribution protein NUDC, putative [Ixodes scapularis] gi|215508727|gb|EEC18181.1| nuclear distribution protein NUDC, putative [Ixodes scapularis]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/86 (87%), Positives = 84/86 (97%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
           MEK+NKMEWW++LV TDPE+NT+K+NPEPSKLSDLDGETRG+VEKMMYDQRQ+EMGLPTS
Sbjct: 241 MEKVNKMEWWNRLVMTDPELNTQKVNPEPSKLSDLDGETRGMVEKMMYDQRQREMGLPTS 300

Query: 61  DEQKKQDVLKKFMEQHPEMDFSNCKF 86
           +EQKKQDVLKKFMEQHPEMDFS CKF
Sbjct: 301 EEQKKQDVLKKFMEQHPEMDFSKCKF 326

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237899|ref|XP_968138.2| PREDICTED: similar to nuclear migration protein nudC [Tribolium castaneum]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/86 (89%), Positives = 83/86 (96%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
           +EKINKM WWSKLV +DPEI+T+KINPEPSKLSDLDGETRGLVEKMMYDQRQKE+GLPTS
Sbjct: 235 LEKINKMNWWSKLVVSDPEISTRKINPEPSKLSDLDGETRGLVEKMMYDQRQKELGLPTS 294

Query: 61  DEQKKQDVLKKFMEQHPEMDFSNCKF 86
           DEQKKQDV+KKFMEQHPEMDFS CKF
Sbjct: 295 DEQKKQDVIKKFMEQHPEMDFSKCKF 320

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550364|ref|XP_001607566.1| PREDICTED: nuclear migration protein nudC-like [Nasonia vitripennis]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 74/86 (86%), Positives = 84/86 (97%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
           +EK+NKM+WW+ +VT+DPEI+TKK+NPEPSKLSDLDGETRGLVEKMMYDQRQKE+GLPTS
Sbjct: 251 LEKVNKMQWWANVVTSDPEISTKKVNPEPSKLSDLDGETRGLVEKMMYDQRQKELGLPTS 310

Query: 61  DEQKKQDVLKKFMEQHPEMDFSNCKF 86
           DEQKKQDV+KKFMEQHPEMDFS CKF
Sbjct: 311 DEQKKQDVIKKFMEQHPEMDFSKCKF 336

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442761695|gb|JAA73006.1| Putative nuclear distribution protein nudc, partial [Ixodes ricinus]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/86 (87%), Positives = 84/86 (97%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
           MEK+NKMEWW++LV TDPE+NT+K+NPEPSKLSDLDGETRG+VEKMMYDQRQ+EMGLPTS
Sbjct: 266 MEKVNKMEWWNRLVMTDPELNTQKVNPEPSKLSDLDGETRGMVEKMMYDQRQREMGLPTS 325

Query: 61  DEQKKQDVLKKFMEQHPEMDFSNCKF 86
           +EQKKQDVLKKFMEQHPEMDFS CKF
Sbjct: 326 EEQKKQDVLKKFMEQHPEMDFSKCKF 351

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
UNIPROTKB|Q5ZIN1	341	NUDC "Nuclear migration protei	0.988	0.252	0.872	5.5e-38
UNIPROTKB|F1NE97	341	NUDC "Nuclear migration protei	0.988	0.252	0.860	7e-38
MGI|MGI:106014	332	Nudc "nuclear distribution gen	0.988	0.259	0.837	6.3e-37
RGD|3215	332	Nudc "nuclear distribution C h	0.988	0.259	0.837	6.3e-37
UNIPROTKB|Q9Y266	331	NUDC "Nuclear migration protei	0.988	0.259	0.837	8e-37
ZFIN|ZDB-GENE-040426-899	333	nudc "nuclear distribution gen	0.977	0.255	0.870	8e-37
UNIPROTKB|Q17QG2	332	NUDC "Nuclear migration protei	0.988	0.259	0.825	1.7e-36
FB|FBgn0021768	332	nudC "nudC" [Drosophila melano	0.988	0.259	0.790	4.4e-36
UNIPROTKB|F1STR6	331	NUDC "Uncharacterized protein"	0.977	0.256	0.837	1.2e-35
WB|WBGene00003829	320	nud-1 [Caenorhabditis elegans	1.0	0.271	0.735	3.2e-33

UNIPROTKB|Q5ZIN1 NUDC "Nuclear migration protein nudC" [Gallus gallus (taxid:9031)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 75/86 (87%), Positives = 80/86 (93%)

Query:     1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
             +EKINKMEWW+KLV+TDPEINTKKINPE SKLSDLD ETR +VEKMMYDQRQK MGLPTS
Sbjct:   255 LEKINKMEWWNKLVSTDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTS 314

Query:    61 DEQKKQDVLKKFMEQHPEMDFSNCKF 86
             DEQKKQD+LKKFMEQHPEMDFS  KF
Sbjct:   315 DEQKKQDILKKFMEQHPEMDFSKAKF 340

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|F1NE97 NUDC "Nuclear migration protein nudC" [Gallus gallus (taxid:9031)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 74/86 (86%), Positives = 80/86 (93%)

Query:     1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
             +EK+NKMEWW+KLV+TDPEINTKKINPE SKLSDLD ETR +VEKMMYDQRQK MGLPTS
Sbjct:   255 LEKVNKMEWWNKLVSTDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTS 314

Query:    61 DEQKKQDVLKKFMEQHPEMDFSNCKF 86
             DEQKKQD+LKKFMEQHPEMDFS  KF
Sbjct:   315 DEQKKQDILKKFMEQHPEMDFSKAKF 340

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:106014 Nudc "nuclear distribution gene C homolog (Aspergillus)" [Mus musculus (taxid:10090)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 72/86 (83%), Positives = 80/86 (93%)

Query:     1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
             +EKINKMEWW++LVT+DPEINTKKINPE SKLSDLD ETR +VEKMMYDQRQK MGLPTS
Sbjct:   246 LEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTS 305

Query:    61 DEQKKQDVLKKFMEQHPEMDFSNCKF 86
             DEQKKQ++LKKFM+QHPEMDFS  KF
Sbjct:   306 DEQKKQEILKKFMDQHPEMDFSKAKF 331

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007097 "nuclear migration" evidence=ISO

GO:0051301 "cell division" evidence=IEA

RGD|3215 Nudc "nuclear distribution C homolog (A. nidulans)" [Rattus norvegicus (taxid:10116)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 72/86 (83%), Positives = 80/86 (93%)

Query:     1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
             +EKINKMEWW++LVT+DPEINTKKINPE SKLSDLD ETR +VEKMMYDQRQK MGLPTS
Sbjct:   246 LEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTS 305

Query:    61 DEQKKQDVLKKFMEQHPEMDFSNCKF 86
             DEQKKQ++LKKFM+QHPEMDFS  KF
Sbjct:   306 DEQKKQEILKKFMDQHPEMDFSKAKF 331

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005874 "microtubule" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007097 "nuclear migration" evidence=IMP

GO:0043434 "response to peptide hormone stimulus" evidence=IEP

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|Q9Y266 NUDC "Nuclear migration protein nudC" [Homo sapiens (taxid:9606)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 72/86 (83%), Positives = 80/86 (93%)

Query:     1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
             +EKINKMEWWS+LV++DPEINTKKINPE SKLSDLD ETR +VEKMMYDQRQK MGLPTS
Sbjct:   245 LEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTS 304

Query:    61 DEQKKQDVLKKFMEQHPEMDFSNCKF 86
             DEQKKQ++LKKFM+QHPEMDFS  KF
Sbjct:   305 DEQKKQEILKKFMDQHPEMDFSKAKF 330

GO:0005874 "microtubule" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0000910 "cytokinesis" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

ZFIN|ZDB-GENE-040426-899 nudc "nuclear distribution gene C homolog" [Danio rerio (taxid:7955)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 74/85 (87%), Positives = 78/85 (91%)

Query:     2 EKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSD 61
             EKINKMEWW+KLVTTDPEINTKKI PE SKLSDLDGETR +VEKMMYDQRQK MGLPTS+
Sbjct:   248 EKINKMEWWNKLVTTDPEINTKKICPENSKLSDLDGETRSMVEKMMYDQRQKSMGLPTSE 307

Query:    62 EQKKQDVLKKFMEQHPEMDFSNCKF 86
             EQKKQD+LKKFM QHPEMDFS  KF
Sbjct:   308 EQKKQDILKKFMAQHPEMDFSKAKF 332

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q17QG2 NUDC "Nuclear migration protein nudC" [Bos taurus (taxid:9913)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 71/86 (82%), Positives = 80/86 (93%)

Query:     1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
             +EKINKMEWWS+LV++DPEINTKKINPE SKLSDLD ETR +VEKMMYDQRQK MGLPTS
Sbjct:   246 LEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTS 305

Query:    61 DEQKKQDVLKKFMEQHPEMDFSNCKF 86
             DEQKKQ++LKKFM+QHPEMDFS  +F
Sbjct:   306 DEQKKQEILKKFMDQHPEMDFSKARF 331

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

FB|FBgn0021768 nudC "nudC" [Drosophila melanogaster (taxid:7227)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 68/86 (79%), Positives = 81/86 (94%)

Query:     1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
             ++KINKM WWS+LVTTDPEI+T+KINPE SKLSDLDGETR +VEKMMYDQRQKE+GLPTS
Sbjct:   246 LDKINKMNWWSRLVTTDPEISTRKINPESSKLSDLDGETRSMVEKMMYDQRQKELGLPTS 305

Query:    61 DEQKKQDVLKKFMEQHPEMDFSNCKF 86
             +++KKQD+L+KF +QHPEMDFS CKF
Sbjct:   306 EDRKKQDILEKFKQQHPEMDFSKCKF 331

GO:0005737 "cytoplasm" evidence=IDA

GO:0007097 "nuclear migration" evidence=ISS;NAS

GO:0048477 "oogenesis" evidence=NAS

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|F1STR6 NUDC "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 72/86 (83%), Positives = 79/86 (91%)

Query:     1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
             +EKINKMEWWS+LV++DPEINTKKINPE SKLSDLD ETR +VEKMMYDQRQK MGLPTS
Sbjct:   246 LEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTS 305

Query:    61 DEQKKQDVLKKFMEQHPEMDFSNCKF 86
             DEQKKQ +LKKFM+QHPEMDFS  KF
Sbjct:   306 DEQKKQ-ILKKFMDQHPEMDFSKAKF 330

GO:0005737 "cytoplasm" evidence=IEA

WB|WBGene00003829 nud-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 64/87 (73%), Positives = 77/87 (88%)

Query:     1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTS 60
             +EKIN MEWW++ + +DP INTK++ PE SKLSDLDGETR +VEKMMYDQRQKEMGLPTS
Sbjct:   234 LEKINDMEWWNRFLDSDPPINTKEVKPENSKLSDLDGETRAMVEKMMYDQRQKEMGLPTS 293

Query:    61 DEQKKQDVLKKFMEQHPEMDFSNCKFG 87
             DE+KK D+L++FM+QHPEMDFSN K G
Sbjct:   294 DEKKKHDMLQQFMKQHPEMDFSNAKIG 320

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040025 "vulval development" evidence=IMP

GO:0035047 "centrosomal and pronuclear rotation" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0035046 "pronuclear migration" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0051301 "cell division" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0051932 "synaptic transmission, GABAergic" evidence=IGI;IMP

GO:0048489 "synaptic vesicle transport" evidence=IMP

GO:0042802 "identical protein binding" evidence=IPI

GO:0042026 "protein refolding" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZIN1	NUDC_CHICK	No assigned EC number	0.8720	0.9885	0.2521	yes	N/A
Q63525	NUDC_RAT	No assigned EC number	0.8372	0.9885	0.2590	yes	N/A
O35685	NUDC_MOUSE	No assigned EC number	0.8372	0.9885	0.2590	yes	N/A
Q9LV09	BOB1_ARATH	No assigned EC number	0.6511	0.9885	0.2828	yes	N/A
O60166	NUDC_SCHPO	No assigned EC number	0.5764	0.9195	0.4819	yes	N/A
Q54M64	NUDC_DICDI	No assigned EC number	0.5058	0.9770	0.4970	yes	N/A
P17624	NUDC_EMENI	No assigned EC number	0.7011	1.0	0.4393	yes	N/A
Q17QG2	NUDC_BOVIN	No assigned EC number	0.8255	0.9885	0.2590	yes	N/A
Q9Y266	NUDC_HUMAN	No assigned EC number	0.8372	0.9885	0.2598	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	87
cd06492	87	cd06492, p23_mNUDC_like, p23-like NUD (nuclear dis	9e-04

>gnl|CDD|107241 cd06492, p23_mNUDC_like, p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

 Score = 34.6 bits (80), Expect = 9e-04
 Identities = 12/14 (85%), Positives = 14/14 (100%)

Query: 1  MEKINKMEWWSKLV 14
          +EKINKMEWWS+LV
Sbjct: 74 LEKINKMEWWSRLV 87

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation. Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
KOG2265|consensus	179		100.0
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	95.85
TIGR00600	1034	rad2 DNA excision repair protein (rad2). All prote	84.41

>KOG2265|consensus

Probab=100.00  E-value=5.5e-38  Score=228.41  Aligned_cols=87  Identities=74%  Similarity=1.148  Sum_probs=84.7

Q ss_pred             CccccccccccccccCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhCCCCC
Q psy16431          1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQDVLKKFMEQHPEMD   80 (87)
Q Consensus         1 L~K~~~~~WW~~vl~GdpeID~~kI~~~~~~l~dlD~etq~~veKmm~dq~qK~~G~ptsde~k~~e~Lkkf~~~~p~~d   80 (87)
                      |+|.++|+||+|+|+|+|+||+.+|+|+.+++++||++||++|+||||||+||.+|+|+||+.+++++|++||++||+||
T Consensus        93 l~K~~~~eWW~~ll~gep~ID~~ki~~e~skl~dldeEtra~vekmmfdq~qk~~~~p~sde~~~~d~Lkk~~~~~~~~~  172 (179)
T KOG2265|consen   93 LKKSNKMEWWDSLLEGEPEIDTKKIEPEESKLSDLDEETRATVEKMMFDQRQKSMGLPTSDELKKHDMLKKFMDQHPEMD  172 (179)
T ss_pred             eeccchHHHHHHHHcCCCCCCccccChhhhhhhhccHHHHHhhhccchhHHHhhcCCCCCchhhHHHHHHHHHHhCCCCC
Confidence            57888899999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy16431         81 FSNCKFG   87 (87)
Q Consensus        81 fs~~~~~   87 (87)
                      ||+|+||
T Consensus       173 f~~a~~~  179 (179)
T KOG2265|consen  173 FSNAKFN  179 (179)
T ss_pred             CchhccC
Confidence            9999997

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=95.85  E-value=0.0051  Score=40.22  Aligned_cols=30  Identities=17%  Similarity=0.337  Sum_probs=25.8

Q ss_pred             CccccccccccccccCCcccccccCCCCCC
Q psy16431          1 MEKINKMEWWSKLVTTDPEINTKKINPEPS   30 (87)
Q Consensus         1 L~K~~~~~WW~~vl~GdpeID~~kI~~~~~   30 (87)
                      |.|...+.||++|.+|+++++..+|+.++.
T Consensus        74 L~K~~~~~~W~~L~~~~~k~~~~~~d~~~w  103 (108)
T cd06465          74 LRKKEAGEYWPRLTKEKGKLPWLKVDFDKW  103 (108)
T ss_pred             EEECCCCCCCcccccCCCCCCceECCchhc
Confidence            567763579999999999999999999874

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>TIGR00600 rad2 DNA excision repair protein (rad2)

Probab=84.41  E-value=1  Score=40.76  Aligned_cols=52  Identities=23%  Similarity=0.176  Sum_probs=40.3

Q ss_pred             cccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhCCC-CCCCC
Q psy16431         18 PEINTKKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQDVLKKFMEQHPE-MDFSN   83 (87)
Q Consensus        18 peID~~kI~~~~~~l~dlD~etq~~veKmm~dq~qK~~G~ptsde~k~~e~Lkkf~~~~p~-~dfs~   83 (87)
                      --+|+.+|++....+..|+.++|..|-.-|-.-++-+|              .+|-+..|+ ||||.
T Consensus       181 ~~~d~~~ID~~S~~F~sLP~~~qyeILs~lRlrSRlRm--------------eQLeemfpdSmDFSk  233 (1034)
T TIGR00600       181 FFHNPSAIDIESEEFSSLPPEVKHEILTDMKLFTKRRR--------------TLFEAMPENSMDFSQ  233 (1034)
T ss_pred             ccCChhhcCCCCHHHHhCCHHHHHHHHHHHHHHHHHHH--------------HHHhhcCCCchhhhH
Confidence            45899999999889999999999999776654444333              666667776 88885

All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	87
1wfi_A	131	Nuclear Move Domain Of Nuclear Distribution Gene C		5e-15
3qor_A	121	Crystal Structure Of Human Nuclear Migration Protei		2e-09
3qor_C	121	Crystal Structure Of Human Nuclear Migration Protei		2e-09
2cr0_A	121	Solution Structure Of Nuclear Move Domain Of Nuclea		3e-06

>pdb|1WFI|A Chain A, Nuclear Move Domain Of Nuclear Distribution Gene C Homolog Length = 131

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLV 43
           +EKINKMEWW++LVT+DPEINTKKINPE SKLSDLD ETR +V
Sbjct: 83  LEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMV 125

>pdb|3QOR|A Chain A, Crystal Structure Of Human Nuclear Migration Protein Nudc Length = 121

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/30 (83%), Positives = 29/30 (96%)
Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPS 30
           +EKINKMEWWS+LV++DPEINTKKINPE S
Sbjct: 92  LEKINKMEWWSRLVSSDPEINTKKINPENS 121

>pdb|3QOR|C Chain C, Crystal Structure Of Human Nuclear Migration Protein Nudc Length = 121

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/30 (83%), Positives = 29/30 (96%)
Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPS 30
           +EKINKMEWWS+LV++DPEINTKKINPE S
Sbjct: 92  LEKINKMEWWSRLVSSDPEINTKKINPENS 121

>pdb|2CR0|A Chain A, Solution Structure Of Nuclear Move Domain Of Nuclear Distribution Gene C Length = 121

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/23 (82%), Positives = 23/23 (100%)
Query: 1   MEKINKMEWWSKLVTTDPEINTK 23
           +EKINKMEWW++LVT+DPEINTK
Sbjct: 93  LEKINKMEWWNRLVTSDPEINTK 115

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	87
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	3e-20
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	8e-17
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	2e-10
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	7e-09
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	4e-04

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Length = 131

 Score = 77.6 bits (191), Expect = 3e-20
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   NKMEWWSKLVTTDPEINTKKI-NPEPSKLSDLDGETRGLVEKMMYDQRQKE 54
            + EWW  L+     ++ +K+   + + +S LD E R +VEKMM++   K+
Sbjct: 79  KRNEWWDSLLVGSESVDVQKLAENKHADMSMLDAEAREVVEKMMHNTSGKD 129

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Length = 131

 Score = 68.8 bits (168), Expect = 8e-17
 Identities = 35/43 (81%), Positives = 40/43 (93%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLV 43
           +EKINKMEWW++LVT+DPEINTKKINPE SKLSDLD ETR +V
Sbjct: 83  LEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMV 125

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Length = 121

 Score = 51.9 bits (124), Expect = 2e-10
 Identities = 25/30 (83%), Positives = 29/30 (96%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPS 30
           +EKINKMEWWS+LV++DPEINTKKINPE S
Sbjct: 92  LEKINKMEWWSRLVSSDPEINTKKINPENS 121

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Length = 124

 Score = 35.3 bits (81), Expect = 4e-04
 Identities = 4/25 (16%), Positives = 12/25 (48%), Gaps = 1/25 (4%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKI 25
           + K+ +  WW+ ++  +  I+    
Sbjct: 97  LSKVGEY-WWNAILEGEEPIDIDSG 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	87
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	99.78
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	99.72
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	99.62
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	98.83
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	98.05
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	97.46
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	93.97
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	90.3

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}

Probab=99.78  E-value=1e-20  Score=128.25  Aligned_cols=54  Identities=31%  Similarity=0.601  Sum_probs=12.0

Q ss_pred             CccccccccccccccCCcccccccCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHc
Q psy16431          1 MEKINKMEWWSKLVTTDPEINTKKINPE-PSKLSDLDGETRGLVEKMMYDQRQKEM   55 (87)
Q Consensus         1 L~K~~~~~WW~~vl~GdpeID~~kI~~~-~~~l~dlD~etq~~veKmm~dq~qK~~   55 (87)
                      |.|. ++.||++|++|+|+||+.+++|+ +++|+|||+|||++|+|||||||||+|
T Consensus        76 L~K~-~~~~W~~L~~~~~~id~~k~~~e~~~~l~dld~e~~~~v~k~~~d~~qk~~  130 (131)
T 2o30_A           76 VTKK-RNEWWDSLLVGSESVDVQKLAENKHADMSMLDAEAREVVEKMMHNTSGKDS  130 (131)
T ss_dssp             EEES-SCCCCSCSBC-----------------------------------------
T ss_pred             EEEC-CCCCCccccCCCCCCCHhHcCcccccccccCCHHHHHHHHHHHHHHHHhhc
Confidence            5677 67999999999999999999999 888999999999999999999999987

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=99.62  E-value=8.1e-18  Score=113.56  Aligned_cols=48  Identities=73%  Similarity=1.102  Sum_probs=45.7

Q ss_pred             CccccccccccccccCCcccccccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy16431          1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMMY   48 (87)
Q Consensus         1 L~K~~~~~WW~~vl~GdpeID~~kI~~~~~~l~dlD~etq~~veKmm~   48 (87)
                      |.|.+++.||++|++|+|+||+++|+|++++|+|||+|||++||||||
T Consensus        83 L~K~~~~~~W~~L~~~~~~id~~ki~pe~~~~~dld~e~r~~vekmm~  130 (131)
T 1wfi_A           83 LEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVSGPSS  130 (131)
T ss_dssp             EEBSSSCCCCSCSBSSCCSCCCSSSSCCCCSCCCCCCCCCCCCCCCCC
T ss_pred             EEECCCCCCChhhhcCCCCCCccEecCCCCCcccCCHHHHHHHHHHhc
Confidence            578887789999999999999999999999999999999999999998

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A

Probab=98.83  E-value=9.3e-10  Score=73.47  Aligned_cols=30  Identities=83%  Similarity=1.388  Sum_probs=27.2

Q ss_pred             CccccccccccccccCCcccccccCCCCCC
Q psy16431          1 MEKINKMEWWSKLVTTDPEINTKKINPEPS   30 (87)
Q Consensus         1 L~K~~~~~WW~~vl~GdpeID~~kI~~~~~   30 (87)
                      |+|.+++.||++|++|+|+||+++|+|++|
T Consensus        92 L~K~~~~~~W~~L~~~~~~id~~ki~pe~s  121 (121)
T 3qor_A           92 LEKINKMEWWSRLVSSDPEINTKKINPENS  121 (121)
T ss_dssp             EEBSSSSCCCSCSBTTSCCBCGGGCCTTC-
T ss_pred             EEECCCCCCChhhhcCCCCCccceeCCCCC
Confidence            578888899999999999999999999974

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=98.05  E-value=7.8e-07  Score=57.56  Aligned_cols=31  Identities=19%  Similarity=0.274  Sum_probs=13.5

Q ss_pred             CccccccccccccccCCcccccccCCCCCCCC
Q psy16431          1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKL   32 (87)
Q Consensus         1 L~K~~~~~WW~~vl~GdpeID~~kI~~~~~~l   32 (87)
                      |.|... .||++|.+++++||+++|+|++|+|
T Consensus        84 L~K~~~-~~W~~L~~~~~~~~~~~i~~~~~~~  114 (114)
T 1rl1_A           84 LKKPEA-VRWEKLEGQGDVPTPKQFVADVKNL  114 (114)
T ss_dssp             EECSSC-CCCSSSBTTC---------------
T ss_pred             EEcCCC-CcCccccccCCccCCcccCCCcCCC
Confidence            467776 5999999999999999999998754

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=97.46  E-value=4.5e-05  Score=50.44  Aligned_cols=23  Identities=13%  Similarity=0.430  Sum_probs=21.0

Q ss_pred             ccccccccccCCcccccccCCCC
Q psy16431          6 KMEWWSKLVTTDPEINTKKINPE   28 (87)
Q Consensus         6 ~~~WW~~vl~GdpeID~~kI~~~   28 (87)
                      .+.||++|++|+++||+++|+|+
T Consensus       101 ~~~~W~~L~~~~~~id~~ki~~~  123 (124)
T 1wgv_A          101 GEYWWNAILEGEEPIDIDSGPSS  123 (124)
T ss_dssp             SSCCCSCSBTTSCCCSCCCSCCC
T ss_pred             CCCCCcCcccCCCccChhhcCCC
Confidence            46899999999999999999975

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2

Probab=93.97  E-value=0.025  Score=37.12  Aligned_cols=37  Identities=14%  Similarity=0.136  Sum_probs=26.5

Q ss_pred             CccccccccccccccCCcccccccCCCCCCCCCCCCHH
Q psy16431          1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGE   38 (87)
Q Consensus         1 L~K~~~~~WW~~vl~GdpeID~~kI~~~~~~l~dlD~e   38 (87)
                      |.|.+.+.||++|+++++++.--+++..+ -.++-|++
T Consensus        77 L~K~~~~~~W~rL~~~~~K~~~lk~D~dk-w~de~dd~  113 (125)
T 1ejf_A           77 LRKGESGQSWPRLTKERAKLNWLSVDFNN-WKDWEDDS  113 (125)
T ss_dssp             EEESSTTCCCSSSBSSCCCCTTEEECTTT-CCCCC---
T ss_pred             EEECCCCCCCCceecCCCccccccCChHH-hCCccccc
Confidence            56777668999999999998888888765 34444444

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=90.30  E-value=0.1  Score=34.77  Aligned_cols=37  Identities=14%  Similarity=0.259  Sum_probs=27.4

Q ss_pred             Ccccc-ccccccccccCCcccccccCCCCCCCCCCCCHH
Q psy16431          1 MEKIN-KMEWWSKLVTTDPEINTKKINPEPSKLSDLDGE   38 (87)
Q Consensus         1 L~K~~-~~~WW~~vl~GdpeID~~kI~~~~~~l~dlD~e   38 (87)
                      |.|.. ++.||++|+++++++.--+++..+ -.++.+++
T Consensus        93 L~K~~~~~~~W~rL~k~~~K~~~lk~D~dk-w~dEde~e  130 (134)
T 2cg9_X           93 LYKKDLESEYWPRLTKEKVKYPYIKTDFDK-WVDADEQD  130 (134)
T ss_dssp             EEECSSSSCCCSCSSSSCCCCSSEEECTTT-CCCSSSSS
T ss_pred             EEECCCCCCCCCceecCCCccCcccCCchh-cCCccccc
Confidence            45666 368999999999998888888765 35555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	87
d1wfia_	131	b.15.1.4 (A:) Nuclear migration protein nudC {Mous	7e-16

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Length = 131

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.3 bits (159), Expect = 7e-16
 Identities = 35/47 (74%), Positives = 40/47 (85%)

Query: 1   MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVEKMM 47
           +EKINKMEWW++LVT+DPEINTKKINPE SKLSDLD ETR +V    
Sbjct: 83  LEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVSGPS 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	87
d1wfia_	131	Nuclear migration protein nudC {Mouse (Mus musculu	99.23
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	97.27
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	92.65

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=2.9e-13  Score=90.22  Aligned_cols=44  Identities=80%  Similarity=1.253  Sum_probs=41.0

Q ss_pred             CccccccccccccccCCcccccccCCCCCCCCCCCCHHHHHHHH
Q psy16431          1 MEKINKMEWWSKLVTTDPEINTKKINPEPSKLSDLDGETRGLVE   44 (87)
Q Consensus         1 L~K~~~~~WW~~vl~GdpeID~~kI~~~~~~l~dlD~etq~~ve   44 (87)
                      |.|.+++.||++||+|||+||++++++++++|+|||+|||++|.
T Consensus        83 L~K~~~~~~W~~l~~gd~~id~~~~~~~~~~l~d~D~et~~~i~  126 (131)
T d1wfia_          83 LEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVS  126 (131)
T ss_dssp             EEBSSSCCCCSCSBSSCCSCCCSSSSCCCCSCCCCCCCCCCCCC
T ss_pred             EEECCCCccCHHHcCCCCCCCHhHcCcccCCCccCCHHHHHhhh
Confidence            57888889999999999999999999999999999999998874

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=4.5e-05  Score=48.58  Aligned_cols=22  Identities=18%  Similarity=0.610  Sum_probs=18.8

Q ss_pred             cccccccccccCCcccccccCCC
Q psy16431          5 NKMEWWSKLVTTDPEINTKKINP   27 (87)
Q Consensus         5 ~~~~WW~~vl~GdpeID~~kI~~   27 (87)
                      ..+.||++|++|+|+||+++ .|
T Consensus       100 ~~~~~W~~L~~ge~~id~~~-~p  121 (124)
T d1wgva_         100 VGEYWWNAILEGEEPIDIDS-GP  121 (124)
T ss_dssp             SSSCCCSCSBTTSCCCSCCC-SC
T ss_pred             cCCCcChhhccCCccccCCC-CC
Confidence            34589999999999999988 45

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.015  Score=35.46  Aligned_cols=28  Identities=14%  Similarity=0.285  Sum_probs=23.4

Q ss_pred             CccccccccccccccCCcccccccCCCC
Q psy16431          1 MEKINKMEWWSKLVTTDPEINTKKINPE   28 (87)
Q Consensus         1 L~K~~~~~WW~~vl~GdpeID~~kI~~~   28 (87)
                      |.|...+.||++|++|++++..-+|+-.
T Consensus        77 L~K~~~~~~W~~L~~~~~K~~~~kvD~d  104 (110)
T d1ejfa_          77 LRKGESGQSWPRLTKERAKLNWLSVDFN  104 (110)
T ss_dssp             EEESSTTCCCSSSBSSCCCCTTEEECTT
T ss_pred             EEEcCCCCCCCceecCCCCcCcEEccch
Confidence            4677777999999999999988777754