Psyllid ID: psy16434
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 745 | 2.2.26 [Sep-21-2011] | |||||||
| Q6EE31 | 548 | T-complex protein 1 subun | yes | N/A | 0.326 | 0.443 | 0.510 | 2e-79 | |
| P42932 | 548 | T-complex protein 1 subun | yes | N/A | 0.315 | 0.428 | 0.532 | 4e-76 | |
| A8X6I9 | 548 | T-complex protein 1 subun | N/A | N/A | 0.316 | 0.430 | 0.492 | 1e-74 | |
| Q3ZCI9 | 548 | T-complex protein 1 subun | yes | N/A | 0.326 | 0.443 | 0.524 | 1e-73 | |
| Q4R5J0 | 548 | T-complex protein 1 subun | N/A | N/A | 0.326 | 0.443 | 0.527 | 3e-71 | |
| Q5RAP1 | 548 | T-complex protein 1 subun | yes | N/A | 0.326 | 0.443 | 0.524 | 5e-71 | |
| P50990 | 548 | T-complex protein 1 subun | yes | N/A | 0.326 | 0.443 | 0.524 | 5e-71 | |
| Q9N358 | 548 | T-complex protein 1 subun | no | N/A | 0.316 | 0.430 | 0.496 | 1e-69 | |
| P78921 | 546 | Probable T-complex protei | yes | N/A | 0.324 | 0.443 | 0.433 | 1e-67 | |
| Q552J0 | 537 | T-complex protein 1 subun | yes | N/A | 0.315 | 0.437 | 0.440 | 2e-64 |
| >sp|Q6EE31|TCPQ_CHICK T-complex protein 1 subunit theta OS=Gallus gallus GN=CCT8 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 297 bits (761), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 147/288 (51%), Positives = 191/288 (66%), Gaps = 45/288 (15%)
Query: 172 AAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAAT 231
A + + KH+SGLEEAVYRNI ACK+ A T RTAYGPNGMNK+VINH++KLFVTNDAAT
Sbjct: 12 AQMLKEGAKHYSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAAT 71
Query: 232 IIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLII 291
I+RELE++ HPAAK+++
Sbjct: 72 ILRELEVQ--------------------------------------------HPAAKMLV 87
Query: 292 LGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLT 351
+ S MQE+E+GDGTNFV++FAG LL A++LLRMGL+ SE++ GY+ A K LEILP L
Sbjct: 88 MASHMQEQEVGDGTNFVLVFAGVLLELAEDLLRMGLSVSEVIEGYEKACKKALEILPDLV 147
Query: 352 CFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITK 411
C K++R+V+ V + +++MSKQYGNE FL+ LI +ACVSILPD S FNVDN+R+ K
Sbjct: 148 CCSAKNLRDVDEVASLLHTSVMSKQYGNESFLSKLIAQACVSILPD-SGHFNVDNIRVCK 206
Query: 412 ILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
I+G+G+ S ++ GMVF + EGD+T AK AVY+CP D TETK
Sbjct: 207 IVGAGVSASSVLHGMVFNKETEGDVTSVKDAKXAVYSCPFDGMITETK 254
|
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin. Gallus gallus (taxid: 9031) |
| >sp|P42932|TCPQ_MOUSE T-complex protein 1 subunit theta OS=Mus musculus GN=Cct8 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 286 bits (732), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 149/280 (53%), Positives = 193/280 (68%), Gaps = 45/280 (16%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
KHFSGLEEAVYRNI ACK+ A T RTAYGPNGMNK+VIN ++KLFVTNDAATI+RELE++
Sbjct: 20 KHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINRLEKLFVTNDAATILRELEVQ 79
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPAAK+I++ S MQE+
Sbjct: 80 --------------------------------------------HPAAKMIVMASHMQEQ 95
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
E+GDGTNFV++FAGALL A+ LLR+GL+ SE+++GY++A K EILP L C K++R
Sbjct: 96 EVGDGTNFVLVFAGALLELAEELLRIGLSVSEVISGYEIACKKAHEILPELVCCSAKNLR 155
Query: 360 NVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN 419
+V+ V+ ++++IMSKQYG+E FL LI +ACVSI PD S +FNVDN+R+ KILGSG+++
Sbjct: 156 DVDEVSSLLRTSIMSKQYGSETFLAKLIAQACVSIFPD-SGNFNVDNIRVCKILGSGIYS 214
Query: 420 SEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
S ++ GMVFK+ EGD+T AKIAVY+CP D TETK
Sbjct: 215 SSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETK 254
|
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin. Mus musculus (taxid: 10090) |
| >sp|A8X6I9|TCPQ_CAEBR T-complex protein 1 subunit theta OS=Caenorhabditis briggsae GN=cct-8 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (720), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 138/280 (49%), Positives = 181/280 (64%), Gaps = 44/280 (15%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
+HF G +EAV RNI AC + A +R+AYGPNGMNK+VINHI+KLFVTNDAATI++ELEI+
Sbjct: 19 QHFKGTDEAVQRNIEACTELASQIRSAYGPNGMNKMVINHIEKLFVTNDAATILKELEIQ 78
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPAAK+II+ ++MQE+
Sbjct: 79 --------------------------------------------HPAAKIIIMATEMQEK 94
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
++GD TN V+I A ALL +A NL+ MG+TP E+ GY+ A K LEILP+L E D++
Sbjct: 95 QIGDNTNTVVILAAALLEHASNLINMGMTPQEVAAGYEQAAEKALEILPSLVVKEASDMK 154
Query: 360 NVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN 419
N+E V + ++SAI SKQY NED + DL+ KACV+ P S +FNVDN+RI KI+GSG+
Sbjct: 155 NIEEVRQYLRSAITSKQYDNEDVIADLVAKACVTTCPANSYNFNVDNIRICKIIGSGVHT 214
Query: 420 SEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
S+++ GMVFKR EG+I A+IAVYTCP D+ TETK
Sbjct: 215 SKVMNGMVFKRGAEGEIRSAQDARIAVYTCPFDLTQTETK 254
|
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. Required for correct subcellular localization of pgl-1. Caenorhabditis briggsae (taxid: 6238) |
| >sp|Q3ZCI9|TCPQ_BOVIN T-complex protein 1 subunit theta OS=Bos taurus GN=CCT8 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 278 bits (711), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 151/288 (52%), Positives = 193/288 (67%), Gaps = 45/288 (15%)
Query: 172 AAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAAT 231
A + + KHFSGLEEAVYRNI ACK+ A T RTAYGPNGMNK+VINH++KLFVTNDAAT
Sbjct: 12 AQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAAT 71
Query: 232 IIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLII 291
I+RELE++ HPAAK+I+
Sbjct: 72 ILRELEVQ--------------------------------------------HPAAKMIV 87
Query: 292 LGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLT 351
+ S MQE+E+GDGTNFV++FAGALL A+ LLR+GL+ SE++ GY++A K EILP L
Sbjct: 88 MASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLV 147
Query: 352 CFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITK 411
C K++R+V+ V+ + +++MSKQYGNE FL LI +ACVSI PD S FNVDN+R+ K
Sbjct: 148 CCSAKNLRDVDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFPD-SGHFNVDNIRVCK 206
Query: 412 ILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
ILGSG+ +S ++ GMVFK+ EGD+T AKIAVY+CP D TETK
Sbjct: 207 ILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETK 254
|
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin. Bos taurus (taxid: 9913) |
| >sp|Q4R5J0|TCPQ_MACFA T-complex protein 1 subunit theta OS=Macaca fascicularis GN=CCT8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (690), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 152/288 (52%), Positives = 194/288 (67%), Gaps = 45/288 (15%)
Query: 172 AAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAAT 231
A + + KHFSGLEEAVYRNI ACK+ A T RTAYGPNGMNK+VINH++KLFVTNDAAT
Sbjct: 12 AQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAAT 71
Query: 232 IIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLII 291
I+RELE++ HPAAK+I+
Sbjct: 72 ILRELEVQ--------------------------------------------HPAAKMIV 87
Query: 292 LGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLT 351
+ S MQE+E+GDGTNFV++FAGALL A+ LLR+GL+ SE++ GY++A K EILP L
Sbjct: 88 MASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPNLV 147
Query: 352 CFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITK 411
C K++R+V+ V+ ++++IMSKQYGNE FL LI +ACVSI PD S FNVDN+R+ K
Sbjct: 148 CCSAKNLRDVDEVSSLLRTSIMSKQYGNEVFLAKLIAQACVSIFPD-SGHFNVDNIRVCK 206
Query: 412 ILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
ILGSG+ +S ++ GMVFK+ EGD+T AKIAVY+CP D TETK
Sbjct: 207 ILGSGISSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGTITETK 254
|
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin. Macaca fascicularis (taxid: 9541) |
| >sp|Q5RAP1|TCPQ_PONAB T-complex protein 1 subunit theta OS=Pongo abelii GN=CCT8 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 269 bits (688), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 151/288 (52%), Positives = 194/288 (67%), Gaps = 45/288 (15%)
Query: 172 AAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAAT 231
A + + KHFSGLEEAVYRNI ACK+ A T RTAYGPNGMNK+VINH++KLFVTNDAAT
Sbjct: 12 AQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAAT 71
Query: 232 IIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLII 291
I+RELE++ HPAAK+I+
Sbjct: 72 ILRELEVQ--------------------------------------------HPAAKMIV 87
Query: 292 LGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLT 351
+ S MQE+E+GDGTNFV++FAGALL A+ LLR+GL+ SE++ GY++A K EILP L
Sbjct: 88 MASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPNLV 147
Query: 352 CFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITK 411
C K++R+++ V+ ++++IMSKQYGNE FL LI +ACVSI PD S FNVDN+R+ K
Sbjct: 148 CCSAKNLRDIDEVSSLLRTSIMSKQYGNEVFLAKLIAQACVSIFPD-SGHFNVDNIRVCK 206
Query: 412 ILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
ILGSG+ +S ++ GMVFK+ EGD+T AKIAVY+CP D TETK
Sbjct: 207 ILGSGISSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETK 254
|
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin. Pongo abelii (taxid: 9601) |
| >sp|P50990|TCPQ_HUMAN T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 269 bits (688), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 151/288 (52%), Positives = 194/288 (67%), Gaps = 45/288 (15%)
Query: 172 AAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAAT 231
A + + KHFSGLEEAVYRNI ACK+ A T RTAYGPNGMNK+VINH++KLFVTNDAAT
Sbjct: 12 AQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAAT 71
Query: 232 IIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLII 291
I+RELE++ HPAAK+I+
Sbjct: 72 ILRELEVQ--------------------------------------------HPAAKMIV 87
Query: 292 LGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLT 351
+ S MQE+E+GDGTNFV++FAGALL A+ LLR+GL+ SE++ GY++A K EILP L
Sbjct: 88 MASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPNLV 147
Query: 352 CFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITK 411
C K++R+++ V+ ++++IMSKQYGNE FL LI +ACVSI PD S FNVDN+R+ K
Sbjct: 148 CCSAKNLRDIDEVSSLLRTSIMSKQYGNEVFLAKLIAQACVSIFPD-SGHFNVDNIRVCK 206
Query: 412 ILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
ILGSG+ +S ++ GMVFK+ EGD+T AKIAVY+CP D TETK
Sbjct: 207 ILGSGISSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETK 254
|
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin. Homo sapiens (taxid: 9606) |
| >sp|Q9N358|TCPQ_CAEEL T-complex protein 1 subunit theta OS=Caenorhabditis elegans GN=cct-8 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 265 bits (677), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 139/280 (49%), Positives = 181/280 (64%), Gaps = 44/280 (15%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
+HF G +EAV RNI AC + A +R+AYGPNGMNK+VINHI+KLFVTNDAATI++ELEI+
Sbjct: 19 QHFKGTDEAVQRNIEACTELASQIRSAYGPNGMNKMVINHIEKLFVTNDAATILKELEIQ 78
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPAA++II+ ++MQE+
Sbjct: 79 --------------------------------------------HPAARIIIMATEMQEK 94
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
++GD TN V+I A ALL +A NL+ MG+TP E+ GY+ A K LEILPTL E D++
Sbjct: 95 QIGDNTNTVVILAAALLEHAANLIHMGMTPQEVAAGYEQAAEKALEILPTLVVKEATDMK 154
Query: 360 NVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN 419
N+E V + I+SAI SKQY NED + DL+ KACV+ P S +FNVDN+RI KI+GSG+
Sbjct: 155 NIEEVRQYIRSAITSKQYDNEDIIADLVAKACVTTCPANSFNFNVDNIRICKIIGSGVHT 214
Query: 420 SEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
S ++ GMVFKR EG+I + A+IAVYTCP D+ TETK
Sbjct: 215 STVMNGMVFKRGAEGEIREARDARIAVYTCPFDLTQTETK 254
|
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin (By similarity). Required for correct subcellular localization of pgl-1. Caenorhabditis elegans (taxid: 6239) |
| >sp|P78921|TCPQ_SCHPO Probable T-complex protein 1 subunit theta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct8 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 258 bits (659), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/286 (43%), Positives = 183/286 (63%), Gaps = 44/286 (15%)
Query: 174 IFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATII 233
+F+ + G+E+AV RN +A ++ ++ RT+ GPNG NKIV+NH+ + F+TNDAATII
Sbjct: 13 LFREGYRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATII 72
Query: 234 RELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILG 293
RELE+ HPAAKL++
Sbjct: 73 RELEVI--------------------------------------------HPAAKLVVDA 88
Query: 294 SQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCF 353
+Q QE E+GD NFV++F G LL A+N++RMGLTP EI GY++AL+ T+E+L +
Sbjct: 89 TQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEICAD 148
Query: 354 EVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKIL 413
+++ V + + + K I++ I SKQYGNEDFL+DL+ KA +++LP S FNVDN+R+ KI+
Sbjct: 149 KIETVESEKELIKAIRTCISSKQYGNEDFLSDLVAKAILTVLPKDPSKFNVDNIRVVKIM 208
Query: 414 GSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
GS L+NS++V+GMVF R EG +T+ +AK+AV++CP+DI+ TETK
Sbjct: 209 GSSLYNSQVVKGMVFPREPEGTVTRSKEAKVAVFSCPLDISQTETK 254
|
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q552J0|TCPQ_DICDI T-complex protein 1 subunit theta OS=Dictyostelium discoideum GN=cct8 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (632), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 123/279 (44%), Positives = 175/279 (62%), Gaps = 44/279 (15%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
KHF+G +EA+ RNI A K ++ RT+ GPNGMNK++INH++KLFVTNDAATIIREL++
Sbjct: 13 KHFAGKDEAILRNIDATKQLSEITRTSLGPNGMNKMIINHLEKLFVTNDAATIIRELDVI 72
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
H PAAK++++ +QMQE+
Sbjct: 73 H--------------------------------------------PAAKMLVMAAQMQEQ 88
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
EMGDGTN+V+ G L A LL MGL PSEI+ G++ A AK EI+ ++ + +KD+
Sbjct: 89 EMGDGTNYVVTLTGEFLQKAATLLEMGLHPSEIITGFEKAGAKLQEIIESMIVYNLKDIT 148
Query: 360 NVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN 419
+ + VTK +KSAI SKQYG E+FL+++IT AC+ +LP + +FN+DNVR+TKI G G+ +
Sbjct: 149 DKKEVTKCLKSAIASKQYGYEEFLSEIITNACLQVLPKKAVNFNIDNVRVTKIPGGGVTD 208
Query: 420 SEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTET 458
+ +++G V EG I + KAKIAV+T +D+ TET
Sbjct: 209 TSVIKGFVIPMDAEGTIKRMEKAKIAVFTMGIDLGRTET 247
|
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 745 | ||||||
| 242009697 | 543 | T-complex protein 1 subunit theta, putat | 0.334 | 0.458 | 0.604 | 2e-96 | |
| 193676235 | 550 | PREDICTED: t-complex protein 1 subunit t | 0.314 | 0.425 | 0.606 | 1e-91 | |
| 193617685 | 550 | PREDICTED: t-complex protein 1 subunit t | 0.314 | 0.425 | 0.606 | 2e-91 | |
| 332026962 | 545 | T-complex protein 1 subunit theta [Acrom | 0.315 | 0.431 | 0.610 | 2e-90 | |
| 452985125 | 493 | hypothetical protein MYCFIDRAFT_153056 [ | 0.526 | 0.795 | 0.388 | 4e-89 | |
| 307206890 | 545 | T-complex protein 1 subunit theta [Harpe | 0.326 | 0.445 | 0.593 | 4e-88 | |
| 431915239 | 497 | T-complex protein 1 subunit theta [Ptero | 0.467 | 0.700 | 0.412 | 4e-88 | |
| 322795688 | 546 | hypothetical protein SINV_05441 [Solenop | 0.315 | 0.430 | 0.6 | 6e-88 | |
| 321463582 | 531 | hypothetical protein DAPPUDRAFT_226650 [ | 0.316 | 0.444 | 0.596 | 2e-87 | |
| 195122414 | 546 | GI20616 [Drosophila mojavensis] gi|19391 | 0.315 | 0.430 | 0.578 | 2e-86 |
| >gi|242009697|ref|XP_002425619.1| T-complex protein 1 subunit theta, putative [Pediculus humanus corporis] gi|212509512|gb|EEB12881.1| T-complex protein 1 subunit theta, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 360 bits (923), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 182/301 (60%), Positives = 221/301 (73%), Gaps = 52/301 (17%)
Query: 161 TIPSPRRTTLPAAIFQYYD--KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVIN 218
+IP P P + D ++F GLEEAV+RNISACK+FA TVRTAYGPNGMNK+VIN
Sbjct: 4 SIPKP-----PGVMQMLKDGARYFQGLEEAVFRNISACKEFAQTVRTAYGPNGMNKMVIN 58
Query: 219 HIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNL 278
H++KLFVTNDAATII+ELE+E
Sbjct: 59 HLEKLFVTNDAATIIKELEVE--------------------------------------- 79
Query: 279 LRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKL 338
HPAAKL+IL SQMQE+E+GDGTNFVIIF GALL A+++LRMGLTP EI GY+L
Sbjct: 80 -----HPAAKLMILASQMQEQEVGDGTNFVIIFCGALLEAAEDMLRMGLTPCEITQGYEL 134
Query: 339 ALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDG 398
AL KTLEILP+LTC+EVKD +N +NVTKGIK+AIMSKQ+G EDFLT LITKAC+SILP+
Sbjct: 135 ALEKTLEILPSLTCYEVKDAKNEQNVTKGIKTAIMSKQFGQEDFLTSLITKACISILPE- 193
Query: 399 SSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTET 458
++FNVDN+R+ KILG+GL +S+++ GMVFKR VEGD+TK+T AKIAVYTCP+DI+ TET
Sbjct: 194 KTTFNVDNIRVCKILGAGLNSSQVINGMVFKRFVEGDVTKKTNAKIAVYTCPIDISQTET 253
Query: 459 K 459
K
Sbjct: 254 K 254
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193676235|ref|XP_001944638.1| PREDICTED: t-complex protein 1 subunit theta-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 344 bits (882), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/282 (60%), Positives = 207/282 (73%), Gaps = 48/282 (17%)
Query: 181 HFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEH 240
H SGLEEAVYRNISACK F+DTV+TAYGPNGMNKIVINHIDK+F+TNDAATI++EL+IE
Sbjct: 21 HLSGLEEAVYRNISACKQFSDTVKTAYGPNGMNKIVINHIDKIFITNDAATIVKELDIE- 79
Query: 241 PAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEE 300
HPAAK+I+ S+MQE+E
Sbjct: 80 -------------------------------------------HPAAKIIVFASEMQEQE 96
Query: 301 MGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRN 360
+GDGTNFVIIFAGALL A++LL+MGLTP E+ G++LAL KTLE+LPTLTC E+KD++N
Sbjct: 97 VGDGTNFVIIFAGALLEQAEHLLKMGLTPVEVCEGFQLALEKTLELLPTLTCHEIKDIKN 156
Query: 361 VEN---VTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGL 417
+T+ +KS+IMSKQYG E F+TDL+ KAC SILP+ ++FNVDNVR+ KILGS L
Sbjct: 157 NAEQLVITQAVKSSIMSKQYGQEQFVTDLVLKACTSILPE-KTTFNVDNVRVCKILGSNL 215
Query: 418 FNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
+NS +V GMVFKR+ EGDITKQT AKIAVYTCP+DI TTETK
Sbjct: 216 YNSTVVNGMVFKRTNEGDITKQTDAKIAVYTCPIDITTTETK 257
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193617685|ref|XP_001946818.1| PREDICTED: t-complex protein 1 subunit theta-like isoform 1 [Acyrthosiphon pisum] gi|328698021|ref|XP_003240514.1| PREDICTED: t-complex protein 1 subunit theta-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 343 bits (881), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 171/282 (60%), Positives = 207/282 (73%), Gaps = 48/282 (17%)
Query: 181 HFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEH 240
H SGLEEAVYRNISACK F+DTV+TAYGPNGMNKIVINHIDK+F+TNDAATI++EL+IE
Sbjct: 21 HLSGLEEAVYRNISACKQFSDTVKTAYGPNGMNKIVINHIDKIFITNDAATIVKELDIE- 79
Query: 241 PAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEE 300
HPAAK+I+ S+MQE+E
Sbjct: 80 -------------------------------------------HPAAKIIVFASEMQEQE 96
Query: 301 MGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRN 360
+GDGTNFVIIFAGALL A++LL+MGLTP E+ G++LAL KTLE+LPTLTC E+KD++N
Sbjct: 97 VGDGTNFVIIFAGALLEQAEHLLKMGLTPVEVCEGFQLALEKTLELLPTLTCHEIKDIKN 156
Query: 361 VEN---VTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGL 417
+T+ +KS+IMSKQYG E F+TDL+ KAC SILP+ ++FNVDNVR+ KILGS L
Sbjct: 157 NAEQLVITQAVKSSIMSKQYGQEQFVTDLVLKACTSILPE-KTTFNVDNVRVCKILGSNL 215
Query: 418 FNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
+NS +V GMVFKR+ EGDITKQT AKIAVYTCP+DI TTETK
Sbjct: 216 YNSTVVNGMVFKRTNEGDITKQTDAKIAVYTCPIDITTTETK 257
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332026962|gb|EGI67058.1| T-complex protein 1 subunit theta [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 171/280 (61%), Positives = 202/280 (72%), Gaps = 45/280 (16%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
++FSGLEEAVYRNI+ACK FADTVR+AYGPNGMNK+VINHI+KLFVTNDA TI+ ELE+E
Sbjct: 20 RYFSGLEEAVYRNITACKQFADTVRSAYGPNGMNKMVINHIEKLFVTNDAVTIVNELEVE 79
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPAAKL++L S+MQE
Sbjct: 80 --------------------------------------------HPAAKLLVLASKMQEA 95
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
E+GDGTNFVIIFAG LL A+ LLR+G+T SEI+ GY+ L K LEILPTL EVKDVR
Sbjct: 96 EVGDGTNFVIIFAGELLHAAEGLLRLGITTSEIIEGYENVLNKALEILPTLIVHEVKDVR 155
Query: 360 NVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN 419
+ E V KGI+S IMSKQYGNED L L+TKAC+SILP+ ++FNVDN+R+ KILG GL N
Sbjct: 156 DEEQVKKGIRSTIMSKQYGNEDILASLVTKACISILPE-KTTFNVDNIRVCKILGGGLSN 214
Query: 420 SEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
S+++QGMVFKR VEGD+TKQT+AKIAVYTC VDI TETK
Sbjct: 215 SQVMQGMVFKRQVEGDVTKQTQAKIAVYTCAVDIIQTETK 254
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|452985125|gb|EME84882.1| hypothetical protein MYCFIDRAFT_153056 [Pseudocercospora fijiensis CIRAD86] | Back alignment and taxonomy information |
|---|
Score = 335 bits (860), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 199/512 (38%), Positives = 272/512 (53%), Gaps = 120/512 (23%)
Query: 161 TIPSPRRTTLPAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHI 220
+IP+ L +Q YD + AV RNI AC+ A TV+T+ GP G NKIVINH+
Sbjct: 4 SIPNAPNQGLFKPGYQNYDAE----DGAVIRNIDACRQIASTVQTSLGPYGRNKIVINHL 59
Query: 221 DKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLR 280
K+ +TNDAATI+RELE
Sbjct: 60 QKMILTNDAATILRELE------------------------------------------- 76
Query: 281 MIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLAL 340
+ HPAAKL+++ SQ QE EMGD TN VI+FAG LL A+ LLRMGL SEIV GY+ A
Sbjct: 77 -VVHPAAKLLVMASQQQEAEMGDATNMVIVFAGELLKKAEELLRMGLKTSEIVQGYERAG 135
Query: 341 AKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSS 400
LE L L +V+D+R+ + K IK+ + +KQ G+E+ L D++ +A +++LP
Sbjct: 136 KFALEALEELEIDKVEDIRDQAELAKAIKTVVAAKQSGSEEVLADMVAEAVLAVLPKNPY 195
Query: 401 SFNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK- 459
+FNVDNVR+ KI+G L S++V+GMVF R +G + K TKAK+ V++CP+DI+ TETK
Sbjct: 196 NFNVDNVRVVKIMGGSLEQSKVVKGMVFGREPDGTVKKATKAKVGVFSCPIDISQTETKG 255
Query: 460 -----------TP------PAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRG 502
TP P E+G D V E+G V VF+ E ++R ATLV+RG
Sbjct: 256 TLRRLCRVVGATPLARLGAPMPDEMGSVDIVETLEIGGDRVTVFRQENEQTRTATLVLRG 315
Query: 503 ATENYMDDIERAVDDGVNTFKGITK----------------------------------- 527
AT+N++DD+ERAVDDGVN K IT+
Sbjct: 316 ATQNHLDDVERAVDDGVNVVKAITRDPRLVPGAGATEMQLIERITALADKTSGLAQYAIR 375
Query: 528 -------VFVKTLAENTGVKSNEVISKLYSAH---------NEGKKTYGFDING---ENS 568
V +TLAE+ G+ + EV++KLY+AH +E G D++ S
Sbjct: 376 KYAEAFEVIPRTLAESAGLDATEVLAKLYTAHHQQTLNSDEDEEIPCLGVDLDNSGVSGS 435
Query: 569 SVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
ID E GILDL ++K WA+K AT +A T+L
Sbjct: 436 GTIDVEEEGILDLMISKSWAIKLATESARTVL 467
|
Source: Pseudocercospora fijiensis CIRAD86 Species: Pseudocercospora fijiensis Genus: Pseudocercospora Family: Mycosphaerellaceae Order: Capnodiales Class: Dothideomycetes Phylum: Ascomycota Superkingdom: Eukaryota |
| >gi|307206890|gb|EFN84736.1| T-complex protein 1 subunit theta [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 332 bits (851), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 171/288 (59%), Positives = 203/288 (70%), Gaps = 45/288 (15%)
Query: 172 AAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAAT 231
A + + ++FSGLEEAVYRNI+ACK ADTVR+AYGPNGMNK+VINHI+KLFVTNDAAT
Sbjct: 12 AQMLKEGARYFSGLEEAVYRNITACKQLADTVRSAYGPNGMNKMVINHIEKLFVTNDAAT 71
Query: 232 IIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLII 291
II ELE+E HPAA+L++
Sbjct: 72 IISELEVE--------------------------------------------HPAARLLV 87
Query: 292 LGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLT 351
L S+MQE E+GDGTNFVIIFAGALL NA+ LLR+G+T SEIV GY+ AL K LEIL TL
Sbjct: 88 LASKMQEAEVGDGTNFVIIFAGALLHNAEELLRLGITTSEIVEGYENALEKALEILQTLV 147
Query: 352 CFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITK 411
EV DVRN E V KGI++ IMSKQYGNED L L+++AC+SILP+ ++FNVDNVR+ K
Sbjct: 148 VQEVTDVRNEEQVKKGIRTTIMSKQYGNEDLLASLVSQACISILPE-KTTFNVDNVRVCK 206
Query: 412 ILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
ILG GL NS++VQGMVFKR VEGD+T +T AKIAVYT VDI TETK
Sbjct: 207 ILGGGLSNSQVVQGMVFKRQVEGDVTTKTSAKIAVYTGAVDITQTETK 254
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|431915239|gb|ELK15926.1| T-complex protein 1 subunit theta [Pteropus alecto] | Back alignment and taxonomy information |
|---|
Score = 332 bits (851), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 216/524 (41%), Positives = 271/524 (51%), Gaps = 176/524 (33%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
KHFSGLEEAVYRNI ACK+ A T RTAYGPNGMNK+VINH++KLFVTNDAATI+RELE++
Sbjct: 20 KHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQ 79
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPAAK+I++ S MQE+
Sbjct: 80 --------------------------------------------HPAAKMIVMASHMQEQ 95
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSE--IVNGYKLALAKTLEILPTLTCFEVKD 357
E+GDGTNFV++FAGALL A+ LLR+GL+ SE ++ GY++A K EILP L C K+
Sbjct: 96 EVGDGTNFVLVFAGALLELAEELLRIGLSVSEASVIEGYEIACKKAHEILPDLVCCSAKN 155
Query: 358 VRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGL 417
+R+++ V+ + ++IMSKQYGNE FL LI +ACV
Sbjct: 156 LRDIDEVSSLLHTSIMSKQYGNEVFLAKLIAQACV------------------------- 190
Query: 418 FNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETKTP---PAASEL------- 467
+ GMVFK+ EGD+T AKIAVY+CP D TETK A EL
Sbjct: 191 -----LHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGE 245
Query: 468 ---------GYADSVA----------------------------VDELG----------- 479
AD+ A V+E+G
Sbjct: 246 ENLMDAQVKAIADTGANVVVTGGKVADMALHYANKYNIMLTPPVVEEMGHCDSVYLSEVG 305
Query: 480 DTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------ 527
DT VVVFK E + I+T+V+RG+T+N MDDIERAVDDGVNTFK +T+
Sbjct: 306 DTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATE 365
Query: 528 ------------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKK 557
+ LAEN+GVK+NEVISKLY+ H EG K
Sbjct: 366 IELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNK 425
Query: 558 TYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601
G DI E +V D EAGILD YL K WA+K AT+AA T+L+
Sbjct: 426 NVGLDIEAEVPAVKDMLEAGILDTYLGKYWAIKLATNAAVTVLR 469
|
Source: Pteropus alecto Species: Pteropus alecto Genus: Pteropus Family: Pteropodidae Order: Chiroptera Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|322795688|gb|EFZ18367.1| hypothetical protein SINV_05441 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 332 bits (850), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 168/280 (60%), Positives = 198/280 (70%), Gaps = 45/280 (16%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
++FSGLEEAVYRNI+ACK FADTVR+AYGPNGMNK++INHI+KLFVTNDA TI+ ELE+E
Sbjct: 20 RYFSGLEEAVYRNITACKQFADTVRSAYGPNGMNKMIINHIEKLFVTNDAVTIVNELEVE 79
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPAAKL++L S+MQE
Sbjct: 80 --------------------------------------------HPAAKLLVLASKMQEA 95
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
E GDGTNFVIIFAG LL A+ LLR+G+T SEI+ GY+ L K LEILPTL EVKDVR
Sbjct: 96 EAGDGTNFVIIFAGELLHAAEGLLRLGITTSEIIEGYENVLNKALEILPTLIVHEVKDVR 155
Query: 360 NVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN 419
+ E V KGIKS IMSKQYGNED L L+ KAC+SILP+ ++FNVDNVR+ KILG GL N
Sbjct: 156 DEEQVKKGIKSTIMSKQYGNEDILASLVVKACISILPE-KTTFNVDNVRVCKILGGGLSN 214
Query: 420 SEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
S+++QGMVFKR VEGD+T++ AKIAVYTC VDI TETK
Sbjct: 215 SQVMQGMVFKRQVEGDVTRKVCAKIAVYTCAVDIIQTETK 254
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321463582|gb|EFX74597.1| hypothetical protein DAPPUDRAFT_226650 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 167/280 (59%), Positives = 199/280 (71%), Gaps = 44/280 (15%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
+ F GLEEAV RNISACK A+TV+TAYGP GMNK+VINH+ KLFVTNDAATIIREL++E
Sbjct: 20 RMFQGLEEAVIRNISACKQLAETVQTAYGPIGMNKMVINHLGKLFVTNDAATIIRELDVE 79
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPAAK++ILGSQMQE+
Sbjct: 80 --------------------------------------------HPAAKMMILGSQMQEQ 95
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
E+GDGTNFVII AGALL A+ L+RMGLTP+EI GY+ AL K LEILP L C V++V+
Sbjct: 96 EVGDGTNFVIILAGALLEQAEALIRMGLTPNEIAEGYEKALEKALEILPNLVCQTVENVQ 155
Query: 360 NVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN 419
+ + +TK I +AIMSKQYGNE FLT LIT+ACVSILPD ++FNVDNVR++KILG L+
Sbjct: 156 DSDVITKAITAAIMSKQYGNESFLTPLITEACVSILPDKKTTFNVDNVRVSKILGGSLYQ 215
Query: 420 SEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
S++VQGMVFKR VEGDIT+ KAKIAVYTCP+D TETK
Sbjct: 216 SQVVQGMVFKRQVEGDITRAEKAKIAVYTCPIDSVQTETK 255
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195122414|ref|XP_002005706.1| GI20616 [Drosophila mojavensis] gi|193910774|gb|EDW09641.1| GI20616 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 327 bits (838), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/280 (57%), Positives = 203/280 (72%), Gaps = 45/280 (16%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
+ +SGLEEAVYRNISACK+F+ T+R+AYGPNGMNK++INHI+K FVT+DA TIIREL++E
Sbjct: 20 RMYSGLEEAVYRNISACKEFSQTMRSAYGPNGMNKMIINHIEKQFVTSDAGTIIRELDVE 79
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPAAKLI++ SQMQ+
Sbjct: 80 --------------------------------------------HPAAKLIVMASQMQDA 95
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
E+GDGTNFV++ AGALL +A+ LLR+G+T +EI +GY+ AL K+LEILPTL C +++D R
Sbjct: 96 EVGDGTNFVVVLAGALLESAEELLRLGITTAEIADGYEKALNKSLEILPTLVCHKIEDYR 155
Query: 360 NVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN 419
NVE V + I+SAIMSKQYG EDFLTDL++KACVSILPD +FNVDN+RI KILGSGL
Sbjct: 156 NVEKVKEVIRSAIMSKQYGQEDFLTDLVSKACVSILPD-EGTFNVDNIRICKILGSGLGA 214
Query: 420 SEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
SE+V+GMVFKR VEGD+T KAKI +++CPVDI TETK
Sbjct: 215 SEVVRGMVFKRFVEGDVTSAEKAKIVIFSCPVDIIQTETK 254
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 745 | ||||||
| ZFIN|ZDB-GENE-040426-876 | 546 | cct8 "chaperonin containing TC | 0.322 | 0.439 | 0.485 | 5.9e-76 | |
| FB|FBgn0033342 | 546 | CG8258 [Drosophila melanogaste | 0.310 | 0.423 | 0.518 | 4.1e-79 | |
| RGD|1305452 | 548 | Cct8 "chaperonin containing Tc | 0.248 | 0.337 | 0.558 | 2e-75 | |
| MGI|MGI:107183 | 548 | Cct8 "chaperonin containing Tc | 0.248 | 0.337 | 0.558 | 3.2e-75 | |
| UNIPROTKB|J9NRN0 | 709 | CCT8 "Uncharacterized protein" | 0.268 | 0.282 | 0.538 | 6.7e-75 | |
| UNIPROTKB|E2RQ81 | 548 | CCT8 "Uncharacterized protein" | 0.268 | 0.364 | 0.538 | 6.7e-75 | |
| UNIPROTKB|B4DQH4 | 475 | CCT8 "T-complex protein 1 subu | 0.240 | 0.376 | 0.566 | 8.5e-75 | |
| UNIPROTKB|P50990 | 548 | CCT8 "T-complex protein 1 subu | 0.268 | 0.364 | 0.533 | 1.4e-74 | |
| UNIPROTKB|B4DEM7 | 529 | CCT8 "cDNA FLJ53379, highly si | 0.268 | 0.378 | 0.533 | 1.4e-74 | |
| UNIPROTKB|I3LCA2 | 548 | CCT8 "Uncharacterized protein" | 0.268 | 0.364 | 0.533 | 2.9e-74 |
| ZFIN|ZDB-GENE-040426-876 cct8 "chaperonin containing TCP1, subunit 8 (theta)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
Identities = 121/249 (48%), Positives = 166/249 (66%)
Query: 259 DGTNFVII-FAGALLVNAD--NLLRMIE--HPAAKLIILGSQMQEEEMGDGTNFVIIFAG 313
+G N ++I L V D +LR +E HPAAK+I++ S MQE+E+GDGTNFV++FAG
Sbjct: 50 NGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAG 109
Query: 314 ALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIM 373
ALL A+ LLRMGL+ SE++ GY++A K LEILP C K++ ++E T I+SA+M
Sbjct: 110 ALLELAEELLRMGLSVSEVIEGYEMACKKALEILPDCVCSSAKNLHDLEEATAMIRSAVM 169
Query: 374 SKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVE 433
SKQYGNEDFL +LI +ACVSI P+ S SFNVDNVR+ KILG GL +S ++ GMVFK+ E
Sbjct: 170 SKQYGNEDFLANLIAQACVSIFPE-SGSFNVDNVRVCKILGCGLNSSTMLHGMVFKKEAE 228
Query: 434 GDITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAES 493
GD+T AKIAV++CP D TETK AD + G+ ++ +++A
Sbjct: 229 GDVTSVKDAKIAVFSCPFDCTVTETKGTVLIKN---ADELMNFSKGEEDLMEAQVKAIAD 285
Query: 494 RIATLVIRG 502
A++V+ G
Sbjct: 286 SGASVVVTG 294
|
|
| FB|FBgn0033342 CG8258 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 4.1e-79, Sum P(2) = 4.1e-79
Identities = 125/241 (51%), Positives = 171/241 (70%)
Query: 263 FVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNL 322
FV AG ++ D +EHPAAKLI++ SQMQ+ E+GDGTNFV++ AGALL +A+ L
Sbjct: 64 FVTSDAGTIMRELD-----VEHPAAKLIVMASQMQDAEVGDGTNFVVVLAGALLESAEEL 118
Query: 323 LRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDF 382
LR+G+T +EI +GY+ AL K LEILP L +++D RNVE V + ++++IMSKQYG EDF
Sbjct: 119 LRLGITTAEISDGYEKALEKALEILPNLVSHKIEDYRNVEKVKEVLRTSIMSKQYGQEDF 178
Query: 383 LTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKA 442
L DL++KACVSILPD +FNVDN+RI KILGSGL SE+V+GMVFKR VEGD+T KA
Sbjct: 179 LNDLVSKACVSILPD-EGTFNVDNIRICKILGSGLTKSEVVRGMVFKRFVEGDVTYAEKA 237
Query: 443 KIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEA-AESRIATLVIR 501
KI +++CPVDI TETK AD + G+ +++ +++A A++ + +V
Sbjct: 238 KIVIFSCPVDIIQTETKGTVLIKS---ADELLSFSSGEESLLESQIKAIADAGVKVVVAG 294
Query: 502 G 502
G
Sbjct: 295 G 295
|
|
| RGD|1305452 Cct8 "chaperonin containing Tcp1, subunit 8 (theta)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 551 (199.0 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
Identities = 105/188 (55%), Positives = 146/188 (77%)
Query: 274 NADNLLRMIE--HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSE 331
+A +LR +E HPAAK+I++ S MQE+E+GDGTNFV++FAGALL A+ LLR+GL+ SE
Sbjct: 68 DAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSE 127
Query: 332 IVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKAC 391
++ GY++A K EILP L C K++R+V+ V+ ++++IMSKQYG+E+FL LI++AC
Sbjct: 128 VITGYEIACKKAHEILPDLVCCSAKNLRDVDEVSSLLRTSIMSKQYGSEEFLAKLISQAC 187
Query: 392 VSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPV 451
VSI PD S +FNVDN+R+ KILGSG+++S ++ GMVFK+ EGD+T AKIAVY+CP
Sbjct: 188 VSIFPD-SGNFNVDNIRVCKILGSGVYSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPF 246
Query: 452 DIATTETK 459
D TETK
Sbjct: 247 DGMITETK 254
|
|
| MGI|MGI:107183 Cct8 "chaperonin containing Tcp1, subunit 8 (theta)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 105/188 (55%), Positives = 145/188 (77%)
Query: 274 NADNLLRMIE--HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSE 331
+A +LR +E HPAAK+I++ S MQE+E+GDGTNFV++FAGALL A+ LLR+GL+ SE
Sbjct: 68 DAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSE 127
Query: 332 IVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKAC 391
+++GY++A K EILP L C K++R+V+ V+ ++++IMSKQYG+E FL LI +AC
Sbjct: 128 VISGYEIACKKAHEILPELVCCSAKNLRDVDEVSSLLRTSIMSKQYGSETFLAKLIAQAC 187
Query: 392 VSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPV 451
VSI PD S +FNVDN+R+ KILGSG+++S ++ GMVFK+ EGD+T AKIAVY+CP
Sbjct: 188 VSIFPD-SGNFNVDNIRVCKILGSGIYSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPF 246
Query: 452 DIATTETK 459
D TETK
Sbjct: 247 DGMITETK 254
|
|
| UNIPROTKB|J9NRN0 CCT8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
Identities = 111/206 (53%), Positives = 149/206 (72%)
Query: 259 DGTNFVII-FAGALLVNAD--NLLRMIE--HPAAKLIILGSQMQEEEMGDGTNFVIIFAG 313
+G N ++I L V D +LR +E HPAAK+I++ S MQE+E+GDGTNFV++FAG
Sbjct: 206 NGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAG 265
Query: 314 ALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIM 373
ALL A+ LLR+GL+ SE++ GY++A K EILP L C K++R+V+ V+ + ++IM
Sbjct: 266 ALLELAEELLRIGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSTLLHTSIM 325
Query: 374 SKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVE 433
SKQYGNE FL LI +ACVSI PD S FNVDN+R+ KILGSG+++S ++ GMVFK+ E
Sbjct: 326 SKQYGNEVFLAKLIAQACVSIFPD-SGHFNVDNIRVCKILGSGIYSSSVLHGMVFKKETE 384
Query: 434 GDITKQTKAKIAVYTCPVDIATTETK 459
GD+T AKIAVY+CP D TETK
Sbjct: 385 GDVTSVKNAKIAVYSCPFDGMITETK 410
|
|
| UNIPROTKB|E2RQ81 CCT8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
Identities = 111/206 (53%), Positives = 149/206 (72%)
Query: 259 DGTNFVII-FAGALLVNAD--NLLRMIE--HPAAKLIILGSQMQEEEMGDGTNFVIIFAG 313
+G N ++I L V D +LR +E HPAAK+I++ S MQE+E+GDGTNFV++FAG
Sbjct: 50 NGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAG 109
Query: 314 ALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIM 373
ALL A+ LLR+GL+ SE++ GY++A K EILP L C K++R+V+ V+ + ++IM
Sbjct: 110 ALLELAEELLRIGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSTLLHTSIM 169
Query: 374 SKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVE 433
SKQYGNE FL LI +ACVSI PD S FNVDN+R+ KILGSG+++S ++ GMVFK+ E
Sbjct: 170 SKQYGNEVFLAKLIAQACVSIFPD-SGHFNVDNIRVCKILGSGIYSSSVLHGMVFKKETE 228
Query: 434 GDITKQTKAKIAVYTCPVDIATTETK 459
GD+T AKIAVY+CP D TETK
Sbjct: 229 GDVTSVKNAKIAVYSCPFDGMITETK 254
|
|
| UNIPROTKB|B4DQH4 CCT8 "T-complex protein 1 subunit theta" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
Identities = 102/180 (56%), Positives = 139/180 (77%)
Query: 280 RMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLA 339
+M++HPAAK+I++ S MQE+E+GDGTNFV++FAGALL A+ LLR+GL+ SE++ GY++A
Sbjct: 3 QMVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIA 62
Query: 340 LAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGS 399
K EILP L C K++R+++ V+ ++++IMSKQYGNE FL LI +ACVSI PD S
Sbjct: 63 CRKAHEILPNLVCCSAKNLRDIDEVSSLLRTSIMSKQYGNEVFLAKLIAQACVSIFPD-S 121
Query: 400 SSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
FNVDN+R+ KILGSG+ +S ++ GMVFK+ EGD+T AKIAVY+CP D TETK
Sbjct: 122 GHFNVDNIRVCKILGSGISSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETK 181
|
|
| UNIPROTKB|P50990 CCT8 "T-complex protein 1 subunit theta" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 545 (196.9 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 110/206 (53%), Positives = 149/206 (72%)
Query: 259 DGTNFVII-FAGALLVNAD--NLLRMIE--HPAAKLIILGSQMQEEEMGDGTNFVIIFAG 313
+G N ++I L V D +LR +E HPAAK+I++ S MQE+E+GDGTNFV++FAG
Sbjct: 50 NGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAG 109
Query: 314 ALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIM 373
ALL A+ LLR+GL+ SE++ GY++A K EILP L C K++R+++ V+ ++++IM
Sbjct: 110 ALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPNLVCCSAKNLRDIDEVSSLLRTSIM 169
Query: 374 SKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVE 433
SKQYGNE FL LI +ACVSI PD S FNVDN+R+ KILGSG+ +S ++ GMVFK+ E
Sbjct: 170 SKQYGNEVFLAKLIAQACVSIFPD-SGHFNVDNIRVCKILGSGISSSSVLHGMVFKKETE 228
Query: 434 GDITKQTKAKIAVYTCPVDIATTETK 459
GD+T AKIAVY+CP D TETK
Sbjct: 229 GDVTSVKDAKIAVYSCPFDGMITETK 254
|
|
| UNIPROTKB|B4DEM7 CCT8 "cDNA FLJ53379, highly similar to T-complex protein 1 subunit theta" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 545 (196.9 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 110/206 (53%), Positives = 149/206 (72%)
Query: 259 DGTNFVII-FAGALLVNAD--NLLRMIE--HPAAKLIILGSQMQEEEMGDGTNFVIIFAG 313
+G N ++I L V D +LR +E HPAAK+I++ S MQE+E+GDGTNFV++FAG
Sbjct: 31 NGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAG 90
Query: 314 ALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIM 373
ALL A+ LLR+GL+ SE++ GY++A K EILP L C K++R+++ V+ ++++IM
Sbjct: 91 ALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPNLVCCSAKNLRDIDEVSSLLRTSIM 150
Query: 374 SKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVE 433
SKQYGNE FL LI +ACVSI PD S FNVDN+R+ KILGSG+ +S ++ GMVFK+ E
Sbjct: 151 SKQYGNEVFLAKLIAQACVSIFPD-SGHFNVDNIRVCKILGSGISSSSVLHGMVFKKETE 209
Query: 434 GDITKQTKAKIAVYTCPVDIATTETK 459
GD+T AKIAVY+CP D TETK
Sbjct: 210 GDVTSVKDAKIAVYSCPFDGMITETK 235
|
|
| UNIPROTKB|I3LCA2 CCT8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 542 (195.9 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 110/206 (53%), Positives = 148/206 (71%)
Query: 259 DGTNFVII-FAGALLVNAD--NLLRMIE--HPAAKLIILGSQMQEEEMGDGTNFVIIFAG 313
+G N ++I L V D +LR +E HPAAK+I++ S MQE+E+GDGTNFV++FAG
Sbjct: 50 NGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAG 109
Query: 314 ALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIM 373
ALL A+ LLR+GL+ SE++ GY++A K EILP L C K++R+V+ V+ + +++M
Sbjct: 110 ALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVM 169
Query: 374 SKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVE 433
SKQYGNE FL LI +ACVSI PD S FNVDN+R+ KILGSG+ +S ++ GMVFK+ E
Sbjct: 170 SKQYGNEAFLAKLIAQACVSIFPD-SGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETE 228
Query: 434 GDITKQTKAKIAVYTCPVDIATTETK 459
GD+T AKIAVY+CP D TETK
Sbjct: 229 GDVTSVKDAKIAVYSCPFDGMITETK 254
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6EE31 | TCPQ_CHICK | No assigned EC number | 0.5104 | 0.3261 | 0.4434 | yes | N/A |
| P42932 | TCPQ_MOUSE | No assigned EC number | 0.5321 | 0.3154 | 0.4288 | yes | N/A |
| P50990 | TCPQ_HUMAN | No assigned EC number | 0.5243 | 0.3261 | 0.4434 | yes | N/A |
| Q5RAP1 | TCPQ_PONAB | No assigned EC number | 0.5243 | 0.3261 | 0.4434 | yes | N/A |
| Q3ZCI9 | TCPQ_BOVIN | No assigned EC number | 0.5243 | 0.3261 | 0.4434 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 745 | |||
| cd03341 | 472 | cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type | 0.0 | |
| TIGR02346 | 531 | TIGR02346, chap_CCT_theta, T-complex protein 1, th | 1e-111 | |
| cd00309 | 464 | cd00309, chaperonin_type_I_II, chaperonin families | 1e-100 | |
| pfam00118 | 481 | pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami | 3e-51 | |
| TIGR02346 | 531 | TIGR02346, chap_CCT_theta, T-complex protein 1, th | 3e-46 | |
| TIGR02346 | 531 | TIGR02346, chap_CCT_theta, T-complex protein 1, th | 2e-44 | |
| COG0459 | 524 | COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po | 9e-44 | |
| cd03343 | 517 | cd03343, cpn60, cpn60 chaperonin family | 3e-38 | |
| TIGR02339 | 519 | TIGR02339, thermosome_arch, thermosome, various su | 6e-36 | |
| cd03338 | 515 | cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type | 1e-31 | |
| cd03333 | 209 | cd03333, chaperonin_like, chaperonin_like superfam | 5e-28 | |
| TIGR02342 | 517 | TIGR02342, chap_CCT_delta, T-complex protein 1, de | 7e-28 | |
| cd03339 | 526 | cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty | 7e-26 | |
| TIGR02343 | 532 | TIGR02343, chap_CCT_epsi, T-complex protein 1, eps | 1e-25 | |
| pfam00118 | 481 | pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami | 3e-25 | |
| cd03337 | 480 | cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type | 2e-24 | |
| cd03341 | 472 | cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type | 6e-24 | |
| cd03335 | 527 | cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type | 6e-24 | |
| TIGR02340 | 536 | TIGR02340, chap_CCT_alpha, T-complex protein 1, al | 1e-23 | |
| TIGR02344 | 525 | TIGR02344, chap_CCT_gamma, T-complex protein 1, ga | 3e-23 | |
| pfam00118 | 481 | pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami | 5e-23 | |
| cd03340 | 522 | cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I | 2e-22 | |
| TIGR02345 | 523 | TIGR02345, chap_CCT_eta, T-complex protein 1, eta | 3e-19 | |
| COG0459 | 524 | COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po | 1e-17 | |
| cd03336 | 517 | cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type | 1e-17 | |
| TIGR02341 | 518 | TIGR02341, chap_CCT_beta, T-complex protein 1, bet | 5e-17 | |
| cd03343 | 517 | cd03343, cpn60, cpn60 chaperonin family | 7e-17 | |
| PTZ00212 | 533 | PTZ00212, PTZ00212, T-complex protein 1 subunit be | 8e-17 | |
| cd03343 | 517 | cd03343, cpn60, cpn60 chaperonin family | 1e-15 | |
| COG0459 | 524 | COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po | 2e-15 | |
| TIGR02339 | 519 | TIGR02339, thermosome_arch, thermosome, various su | 8e-15 | |
| TIGR02339 | 519 | TIGR02339, thermosome_arch, thermosome, various su | 9e-15 | |
| cd03335 | 527 | cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type | 7e-13 | |
| TIGR02340 | 536 | TIGR02340, chap_CCT_alpha, T-complex protein 1, al | 5e-12 | |
| cd00309 | 464 | cd00309, chaperonin_type_I_II, chaperonin families | 3e-11 | |
| cd03333 | 209 | cd03333, chaperonin_like, chaperonin_like superfam | 1e-10 | |
| TIGR02345 | 523 | TIGR02345, chap_CCT_eta, T-complex protein 1, eta | 2e-10 | |
| TIGR02347 | 531 | TIGR02347, chap_CCT_zeta, T-complex protein 1, zet | 2e-10 | |
| cd03336 | 517 | cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type | 4e-10 | |
| cd03335 | 527 | cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type | 5e-10 | |
| cd03342 | 484 | cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type | 5e-10 | |
| TIGR02340 | 536 | TIGR02340, chap_CCT_alpha, T-complex protein 1, al | 1e-09 | |
| PTZ00212 | 533 | PTZ00212, PTZ00212, T-complex protein 1 subunit be | 3e-09 | |
| cd03339 | 526 | cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty | 8e-09 | |
| TIGR02343 | 532 | TIGR02343, chap_CCT_epsi, T-complex protein 1, eps | 3e-08 | |
| cd03340 | 522 | cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I | 2e-07 | |
| TIGR02341 | 518 | TIGR02341, chap_CCT_beta, T-complex protein 1, bet | 5e-07 | |
| cd03338 | 515 | cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type | 9e-07 | |
| cd03337 | 480 | cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type | 2e-06 | |
| cd03342 | 484 | cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type | 2e-06 | |
| TIGR02342 | 517 | TIGR02342, chap_CCT_delta, T-complex protein 1, de | 4e-06 | |
| TIGR02347 | 531 | TIGR02347, chap_CCT_zeta, T-complex protein 1, zet | 1e-05 | |
| cd03334 | 261 | cd03334, Fab1_TCP, TCP-1 like domain of the eukary | 1e-04 | |
| cd03344 | 520 | cd03344, GroEL, GroEL_like type I chaperonin | 1e-04 | |
| PRK12849 | 542 | PRK12849, groEL, chaperonin GroEL; Reviewed | 1e-04 | |
| TIGR02344 | 525 | TIGR02344, chap_CCT_gamma, T-complex protein 1, ga | 2e-04 | |
| PRK12851 | 541 | PRK12851, groEL, chaperonin GroEL; Reviewed | 5e-04 | |
| TIGR02348 | 524 | TIGR02348, GroEL, chaperonin GroL | 8e-04 | |
| PRK12850 | 544 | PRK12850, groEL, chaperonin GroEL; Reviewed | 8e-04 | |
| cd03338 | 515 | cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type | 0.002 | |
| cd03344 | 520 | cd03344, GroEL, GroEL_like type I chaperonin | 0.002 | |
| TIGR02342 | 517 | TIGR02342, chap_CCT_delta, T-complex protein 1, de | 0.003 | |
| PLN03167 | 600 | PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr | 0.003 |
| >gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit | Back alignment and domain information |
|---|
Score = 534 bits (1377), Expect = 0.0
Identities = 223/508 (43%), Positives = 293/508 (57%), Gaps = 130/508 (25%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
+H+SGLEEAV RNI ACK+ + RT+YGPNGMNK+VINH++KLFVT+DAATI+RELE++
Sbjct: 1 RHYSGLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQ 60
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPAAKL LV A SQMQEE
Sbjct: 61 HPAAKL--------------------------LVMA------------------SQMQEE 76
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
E+GDGTN V++ AG LL A+ LLRMGL PSEI+ GY+ AL K LEIL L ++++D+R
Sbjct: 77 EIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLR 136
Query: 360 NVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN 419
N E V+K +K+AI SKQYGNEDFL+ L+ +AC+S+LP+ +FNVDN+R+ KILG L +
Sbjct: 137 NKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLED 196
Query: 420 SEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDI-------------------------- 453
S++V+GMVFKR EG + + KAK+AV++CP DI
Sbjct: 197 SKVVRGMVFKREPEGSVKRVKKAKVAVFSCPFDIGVNVIVAGGSVGDLALHYCNKYGIMV 256
Query: 454 -----------------ATTETK-TPPAASELGYADSVAVDELGDTAVVVFKLEAAESRI 495
AT + P E+GY DSV V+E+GDT VVVF+ +S+I
Sbjct: 257 IKINSKFELRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKI 316
Query: 496 ATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------------------- 527
AT+V+RGAT+N +DD+ERA+DDGVN FK +TK
Sbjct: 317 ATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPG 376
Query: 528 --------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDA 573
V +TLAEN G+ + EV+S+LY+AH +G K+ G DI + DA
Sbjct: 377 LEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDA 436
Query: 574 AEAGILDLYLTKMWALKYATSAANTILQ 601
EAGI D TK WA+K AT AA T+L+
Sbjct: 437 KEAGIFDHLATKKWAIKLATEAAVTVLR 464
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 472 |
| >gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit | Back alignment and domain information |
|---|
Score = 347 bits (891), Expect = e-111
Identities = 138/280 (49%), Positives = 188/280 (67%), Gaps = 44/280 (15%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
+H SGLEEAV +NI ACK+ + RT+ GPNGMNK+VINH+DKLFVTNDAATI+RELE++
Sbjct: 11 RHMSGLEEAVIKNIEACKELSQITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQ 70
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPAAKL+++ S+MQE E+
Sbjct: 71 HPAAKLLVMASEMQENEI------------------------------------------ 88
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
GDGTN VI+ AG LL A+ L+RMGL PSEI+ GY++AL K +E+L L +E++D+R
Sbjct: 89 --GDGTNLVIVLAGELLNKAEELIRMGLHPSEIIKGYEMALKKAMEVLEELVVWEIEDLR 146
Query: 360 NVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN 419
+ + + K +K++I SKQYGNEDFL+ L+ KAC ++LP +FNVDN+R+ KI+G L N
Sbjct: 147 DKKELIKALKASISSKQYGNEDFLSQLVAKACSTVLPKNPQNFNVDNIRVVKIMGGSLSN 206
Query: 420 SEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
SE+++GMVF R EG + + KAK+AV++CP+D ATTETK
Sbjct: 207 SEVIKGMVFNREAEGSVKRVKKAKVAVFSCPLDTATTETK 246
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531 |
| >gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II | Back alignment and domain information |
|---|
Score = 316 bits (812), Expect = e-100
Identities = 138/511 (27%), Positives = 219/511 (42%), Gaps = 144/511 (28%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
K EEA NI+A K AD V+T GP GM+K++++ + +TND ATI++E+E+E
Sbjct: 1 KEREFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVE 60
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPAAKL++ E+ ++ Q++
Sbjct: 61 HPAAKLLV--------EV------------------------------------AKSQDD 76
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTL-TCFEVKDV 358
E+GDGT V++ AG LL A+ LL G+ P+EI+ GY+ A+ K LEIL + +V+D
Sbjct: 77 EVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDR 136
Query: 359 RNVENVTKGIKSAIMSKQ-YGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGL 417
+ V +++ SK G +DFL +L+ A + + + ++ +R+ K G L
Sbjct: 137 EELLKV---ATTSLNSKLVSGGDDFLGELVVDAVLKVGKEN-GDVDLGVIRVEKKKGGSL 192
Query: 418 FNSEIVQGMVFKRSVEGDI--TKQTKAKIAVYTCPVD----------------------- 452
+SE+V GMVF + + AKI + C ++
Sbjct: 193 EDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEYVVIAEKGIDDEALHYLAKLGIM 252
Query: 453 ---------------------IATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAA 491
++ E TP +LG A V ++GD +
Sbjct: 253 AVRRVRKEDLERIAKATGATIVSRLEDLTP---EDLGTAGLVEETKIGDEKYTFIE-GCK 308
Query: 492 ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------ 527
++AT+++RGATE +D+ ER++ D + + +
Sbjct: 309 GGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAK 368
Query: 528 ------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSS 569
V +TLAEN G+ EV++KL + H EG G D+ E
Sbjct: 369 TLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDV--ETGE 426
Query: 570 VIDAAEAGILDLYLTKMWALKYATSAANTIL 600
++D EAGI+D K ALK AT AA+ IL
Sbjct: 427 IVDMKEAGIIDPLKVKRQALKSATEAASLIL 457
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464 |
| >gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family | Back alignment and domain information |
|---|
Score = 185 bits (472), Expect = 3e-51
Identities = 80/265 (30%), Positives = 129/265 (48%), Gaps = 54/265 (20%)
Query: 199 FADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMG 258
AD V+T GP G NK+++NH K+ +TND ATI++E+EI+HPAAKL+
Sbjct: 1 LADAVKTTLGPKGRNKMLVNHGGKITITNDGATILKEIEIQHPAAKLL------------ 48
Query: 259 DGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVN 318
V A ++ Q+EE+GDGT ++ AG LL
Sbjct: 49 --------------VEA------------------AKSQDEEVGDGTTTAVVLAGELLEE 76
Query: 319 ADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYG 378
A+ L+ G+ P++I+ GY+LAL L+ L L+ V D + E++ ++++ SK
Sbjct: 77 AEKLIEAGIHPTDIIRGYELALEIALKALEELS-IPVSD--DDEDLLNVARTSLNSKISS 133
Query: 379 NE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGDI- 436
E + L L+ A + I F+V N+ + KI G L +SE+++G+V +
Sbjct: 134 RESELLGKLVVDAVLLI----IEKFDVGNIGVIKIEGGSLEDSELIEGIVLDKGYLSPDM 189
Query: 437 -TKQTKAKIAVYTCPVDIATTETKT 460
+ KI + CP++ TE
Sbjct: 190 PKRLENPKILLLDCPLEYEKTEKVI 214
|
This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481 |
| >gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 3e-46
Identities = 69/110 (62%), Positives = 90/110 (81%)
Query: 595 AANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADT 654
A ++ + KAK+AV++CP+D ATTETKGTVLI +A+EL+ +S+GEENQ+E IKAIAD+
Sbjct: 219 AEGSVKRVKKAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAMIKAIADS 278
Query: 655 GANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
G NV+V G GDMALHYLN+YG+M +++ SKF+LRRLCK V AT LPRL
Sbjct: 279 GVNVIVTGGSVGDMALHYLNRYGIMVLKIPSKFELRRLCKTVGATPLPRL 328
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531 |
| >gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 2e-44
Identities = 75/183 (40%), Positives = 98/183 (53%), Gaps = 42/183 (22%)
Query: 460 TPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV 519
P ELGY DSV V E+G V VFK E +SRI+T+++RG+T+N +DDIERA+DDGV
Sbjct: 329 GAPTPEELGYVDSVYVSEIGGDKVTVFKQENGDSRISTIILRGSTKNLLDDIERAIDDGV 388
Query: 520 NTFKGITK------------------------------------------VFVKTLAENT 537
N K + K + +TLAEN
Sbjct: 389 NVVKALVKDGRFLPGAGATEIELASRLTKYAEKTPGLDQYAIKKFAEAFEIIPRTLAENA 448
Query: 538 GVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAAN 597
G+ NEVI KLY+AH +G + G DI E+ V DA+EAGI D+ TK +A+K AT AA
Sbjct: 449 GLNPNEVIPKLYAAHKKGNTSKGIDIEAESDGVKDASEAGIYDMLATKKFAIKLATEAAV 508
Query: 598 TIL 600
T+L
Sbjct: 509 TVL 511
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531 |
| >gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 9e-44
Identities = 74/279 (26%), Positives = 127/279 (45%), Gaps = 55/279 (19%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
E+A NI A + AD V+T GP G NK++++ + +TND TI++E+E+EHP AKL
Sbjct: 10 EDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKL 69
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ E+ ++ Q++E GDGT
Sbjct: 70 LV--------EV------------------------------------AKKQDDEAGDGT 85
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
++ AGALL A+ L+ G+ P+ I GY+LA+ K +E L + K V + E
Sbjct: 86 TTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIA----KPVSDSEEEL 141
Query: 366 KGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQG 425
K +++ SK +++ + +L+ +A + G ++D + I K G E+V+G
Sbjct: 142 KIAITSVASKSANSDEEIGELVVEAVEKV---GKEQSDLDGIIIVKESGGSETELEVVEG 198
Query: 426 MVFKRSVEG--DITKQ--TKAKIAVYTCPVDIATTETKT 460
MVF + + + KI + ++I E
Sbjct: 199 MVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPELPL 237
|
Length = 524 |
| >gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 3e-38
Identities = 80/280 (28%), Positives = 138/280 (49%), Gaps = 51/280 (18%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+A NI+A K A+ VRT GP GM+K++++ + + +TND ATI++E++IEHPAAK+
Sbjct: 14 RDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKM 73
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ E+ ++ Q+EE+GDGT
Sbjct: 74 LV--------EV------------------------------------AKTQDEEVGDGT 89
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
++ AG LL A++LL + P+ I+ GY+LA K LE+L + D + + +
Sbjct: 90 TTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIA--IKVDPDDKDTLR 147
Query: 366 KGIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVD--NVRITKILGSGLFNSEI 422
K K+++ K D L DL+ A + + + VD N++I K G + ++E+
Sbjct: 148 KIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTEL 207
Query: 423 VQGMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
++G+V + V G + AKIA+ P+++ TE
Sbjct: 208 IRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEIDA 247
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517 |
| >gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 6e-36
Identities = 78/281 (27%), Positives = 137/281 (48%), Gaps = 53/281 (18%)
Query: 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLI 246
+A NI+A K A+ V++ GP GM+K++++ + + +TND ATI++E++IEHPAAK++
Sbjct: 16 DAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKML 75
Query: 247 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTN 306
+ ++ Q+EE+GDGT ++ AG LL A++LL HP
Sbjct: 76 VEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLEQDIHPTV------------------- 116
Query: 307 FVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTK 366
I+ GY+ A K LEI+ + + + + K
Sbjct: 117 -------------------------IIEGYRKAAEKALEIIDEIA--TKISPEDRDLLKK 149
Query: 367 GIKSAIMSKQYGNE--DFLTDLITKACVSIL---PDGSSSFNVDNVRITKILGSGLFNSE 421
++++ SK D L +L+ +A + DG ++DN++I K G + ++E
Sbjct: 150 VAETSLTSKASAEVAKDKLANLVVEAVKQVAELRGDGKYYVDLDNIKIVKKTGGSIDDTE 209
Query: 422 IVQGMVF-KRSVEGDITKQ-TKAKIAVYTCPVDIATTETKT 460
+V+G+V K V + K+ AKIA+ P+++ TE
Sbjct: 210 LVEGIVVDKEVVHPGMPKRVENAKIALLDAPLEVEKTEIDA 250
|
Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519 |
| >gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 1e-31
Identities = 77/263 (29%), Positives = 134/263 (50%), Gaps = 57/263 (21%)
Query: 192 NISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQ 251
NI A K AD +RT+ GP GM+K++ ++ +TND ATI++++ + HPAAK+++
Sbjct: 13 NIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLV---- 68
Query: 252 MQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIF 311
E+ S+ Q+ E GDGT V++
Sbjct: 69 ----EL------------------------------------SKAQDIEAGDGTTSVVVL 88
Query: 312 AGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTL-TCFEVKDVRN--VENVTKGI 368
AGALL ++LL+ G+ P+ I +++A K +EIL ++ ++ D R +++ T +
Sbjct: 89 AGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLND-RESLIKSATTSL 147
Query: 369 KSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVD--NVRITKILGSGLFNSEIVQGM 426
S ++S QY L + A + ++ D +++ NVD ++RI K LG + ++E+V G+
Sbjct: 148 NSKVVS-QYS--SLLAPIAVDAVLKVI-DPATATNVDLKDIRIVKKLGGTIEDTELVDGL 203
Query: 427 VFKR---SVEGDITKQTKAKIAV 446
VF + G T+ KAKI +
Sbjct: 204 VFTQKASKKAGGPTRIEKAKIGL 226
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 515 |
| >gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 5e-28
Identities = 43/208 (20%), Positives = 87/208 (41%), Gaps = 51/208 (24%)
Query: 362 ENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSE 421
E + + +++ SK +DFL L+ A + + PD ++ +++ KI G L +SE
Sbjct: 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRM-DDLGVIKVEKIPGGSLEDSE 60
Query: 422 IVQGMVFKRSVEGDI--TKQTKAKIAVYTCPVD--------------------------- 452
+V G+VF + + AKI + CP++
Sbjct: 61 LVVGVVFDKGYASPYMPKRLENAKILLLDCPLEYVVIAEKGIDDLALHYLAKAGIMAVRR 120
Query: 453 -----------------IATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRI 495
+++ E TP +LG A+ V ++G+ + + +
Sbjct: 121 VKKEDLERIARATGATIVSSLEDLTP---EDLGTAELVEETKIGEEKLTFIE-GCKGGKA 176
Query: 496 ATLVIRGATENYMDDIERAVDDGVNTFK 523
AT+++RGATE +D+++R++ D + +
Sbjct: 177 ATILLRGATEVELDEVKRSLHDALCAVR 204
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. Length = 209 |
| >gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 7e-28
Identities = 75/263 (28%), Positives = 130/263 (49%), Gaps = 57/263 (21%)
Query: 192 NISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQ 251
NI A K AD +RT+ GP GM+K++ + ++ +TND ATI++++ + HPAAK+++
Sbjct: 14 NIVAAKAVADAIRTSLGPKGMDKMIQDGKGEVIITNDGATILKQMAVLHPAAKMLV---- 69
Query: 252 MQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIF 311
E+ S+ Q+ E GDGT V+I
Sbjct: 70 ----EL------------------------------------SKAQDIEAGDGTTSVVIL 89
Query: 312 AGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSA 371
AGALL + LL G+ P+ I ++ A + ++IL + V D+ + E + K ++
Sbjct: 90 AGALLGACERLLNKGIHPTIISESFQSAADEAIKILDEM-SIPV-DLSDREQLLKSATTS 147
Query: 372 IMSK---QYGNEDFLTDLITKACVSILPDGSSSFNVD--NVRITKILGSGLFNSEIVQGM 426
+ SK QY L L A + ++ D ++ NVD ++++ K LG + ++E+++G+
Sbjct: 148 LSSKVVSQY--SSLLAPLAVDAVLKVI-DPENAKNVDLNDIKVVKKLGGTIDDTELIEGL 204
Query: 427 VFKRSVE---GDITKQTKAKIAV 446
VF + G T+ KAKI +
Sbjct: 205 VFTQKASKSAGGPTRIEKAKIGL 227
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 517 |
| >gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 7e-26
Identities = 74/280 (26%), Positives = 132/280 (47%), Gaps = 55/280 (19%)
Query: 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLI 246
EA +I A K A+ +RT+ GP GM+KI+++ ++ VTND ATI+ +++++H AKL+
Sbjct: 23 EAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLL 82
Query: 247 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTN 306
+ E+ S+ Q++E+GDGT
Sbjct: 83 V--------EL------------------------------------SKSQDDEIGDGTT 98
Query: 307 FVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTK 366
V++ AGALL A+ LL G+ P I +GY+ A +E L + N E + +
Sbjct: 99 GVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQ 158
Query: 367 GIKSAIMSK-QYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQG 425
+++ SK ++ A +S+ N + +++ +G L ++++V+G
Sbjct: 159 TAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKG 218
Query: 426 MVFKRSVEGDIT-----KQTK-AKIAVYTCPVDIATTETK 459
+V ++ D + K+ K AKIA+ TCP + +TK
Sbjct: 219 IV----IDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTK 254
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 526 |
| >gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-25
Identities = 72/277 (25%), Positives = 133/277 (48%), Gaps = 49/277 (17%)
Query: 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLI 246
EA NI+A K A +RT+ GP GM+K++I+ + VTND ATI+ ++++++P AKL+
Sbjct: 27 EAKKSNIAAAKSVASILRTSLGPKGMDKMLISPDGDITVTNDGATILSQMDVDNPIAKLM 86
Query: 247 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTN 306
+ ++ S+ Q++E+GDGT
Sbjct: 87 V---EL-----------------------------------------SKSQDDEIGDGTT 102
Query: 307 FVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVK-DVRNVENVT 365
V++ AGALL A+ LL G+ P +I G++ A +E L E+ D N E +
Sbjct: 103 GVVVLAGALLEQAEELLDKGIHPIKIAEGFEEAARVAVEHLEE-ISDEISADNNNREPLI 161
Query: 366 KGIKSAIMSK-QYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQ 424
+ K+++ SK ++ A +++ + D +++ +G L ++++++
Sbjct: 162 QAAKTSLGSKIVSKCHRRFAEIAVDAVLNVADMERRDVDFDLIKVEGKVGGSLEDTKLIK 221
Query: 425 GMVFKRSVEG-DITKQTK-AKIAVYTCPVDIATTETK 459
G++ + + K+ K AKIA+ TCP + +TK
Sbjct: 222 GIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTK 258
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 532 |
| >gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 3e-25
Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 46/181 (25%)
Query: 462 PAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNT 521
ELG A V E+G+ + ++AT+++RGAT++ +D++ERA++D +N
Sbjct: 295 LEPDELGSAGKVEEREIGEDKTTFIE-GCLSGKVATILLRGATDHELDELERAIEDALNA 353
Query: 522 FKGITK------------------------------------------VFVKTLAENTGV 539
K K V +TLAEN G+
Sbjct: 354 VKAALKDEGVVPGGGAAELELSRALREYAKSVSGKEQLGIEAFAEALEVIPRTLAENAGL 413
Query: 540 KSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTI 599
EV++KL +AH +G G D + + D EAGI+D K ALK A A+ I
Sbjct: 414 DPIEVLAKLKAAHKKGN-NLGIDA--DTGEIGDMKEAGIIDPLKVKRSALKSAVEVASLI 470
Query: 600 L 600
L
Sbjct: 471 L 471
|
This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481 |
| >gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 2e-24
Identities = 69/246 (28%), Positives = 112/246 (45%), Gaps = 51/246 (20%)
Query: 192 NISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQ 251
NI A K AD +RT GP M K++++ + + +TND I+RE+++ HPAAK
Sbjct: 21 NIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAK------- 73
Query: 252 MQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIF 311
MIE S+ Q+EE+GDGT VII
Sbjct: 74 ----------------------------SMIEL---------SRTQDEEVGDGTTSVIIL 96
Query: 312 AGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSA 371
AG +L A+ L G+ P+ I+ Y+ AL L+IL ++ DV + + K IKS
Sbjct: 97 AGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEIS--IPVDVNDRAQMLKIIKSC 154
Query: 372 IMSKQYGNE-DFLTDLITKACVSI-LPDGSSSFNVD---NVRITKILGSGLFNSEIVQGM 426
I +K D + +L A ++ + + +D ++ KI G + +S ++ G+
Sbjct: 155 IGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGV 214
Query: 427 VFKRSV 432
+ + V
Sbjct: 215 MLNKDV 220
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 480 |
| >gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 6e-24
Identities = 42/108 (38%), Positives = 56/108 (51%), Gaps = 38/108 (35%)
Query: 597 NTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGA 656
++ + KAK+AV++CP DI G
Sbjct: 211 GSVKRVKKAKVAVFSCPFDI--------------------------------------GV 232
Query: 657 NVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
NV+VAG GD+ALHY NKYG+M +++NSKF+LRRLC+ V AT LPRL
Sbjct: 233 NVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRL 280
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 472 |
| >gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 6e-24
Identities = 73/276 (26%), Positives = 132/276 (47%), Gaps = 64/276 (23%)
Query: 183 SGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPA 242
SG ++ +N++A A+ V+++ GP G++K++++ I + +TND ATI++ LE+EHPA
Sbjct: 5 SG-QDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA 63
Query: 243 AKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMG 302
AK +LV +Q+Q++E+G
Sbjct: 64 AK--------------------------ILVEL------------------AQLQDKEVG 79
Query: 303 DGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLE-ILPTLTCFEVKDVRNV 361
DGT V+I A LL A+ L++ + P+ I++GY+LA + ++ I L+ +V
Sbjct: 80 DGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSI-------SV 132
Query: 362 ENVTKGI-----KSAIMSKQYGNE-DFLTDLITKACVSIL---PDGSSSFNVDNVRITKI 412
+N+ K K+++ SK G + DF +++ A +++ G + + + V I K
Sbjct: 133 DNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKA 192
Query: 413 LGSGLFNSEIVQGMVFKRSV--EGDITKQTKAKIAV 446
G S +V G + +G T+ AKIA
Sbjct: 193 HGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIAC 228
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 527 |
| >gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-23
Identities = 68/271 (25%), Positives = 130/271 (47%), Gaps = 61/271 (22%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
++ +N++A A+ V+T+ GP G++K++++ I + +TND ATI++ LE+EHPAAK+
Sbjct: 11 QDVRTQNVTATMAVANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKI 70
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ E+ +Q+Q+ E+GDGT
Sbjct: 71 LV--------EL------------------------------------AQLQDREVGDGT 86
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
V+I A LL A+ L++ + P+ I++GY+LAL + ++ + + +V+ +
Sbjct: 87 TSVVIIAAELLKRANELVKNKVHPTSIISGYRLALKEAVKYI------KENLSVSVDTLG 140
Query: 366 KG-----IKSAIMSKQYGNE-DFLTDLITKACVSIL---PDGSSSFNVDNVRITKILGSG 416
K K+++ SK G + DF ++++ A +++ +G + + V I K G
Sbjct: 141 KEALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKTTNENGEIKYPIKAVNILKAHGKS 200
Query: 417 LFNSEIVQGMVFKRSVEGDITKQ--TKAKIA 445
S +V+G + + KAKIA
Sbjct: 201 ARESYLVKGYALNCTRASQQMPKRIKKAKIA 231
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536 |
| >gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 3e-23
Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 51/246 (20%)
Query: 192 NISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQ 251
NI A K AD +RT GP M K++++ + + +TND I+RE+++ HPAAK
Sbjct: 21 NIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAK------- 73
Query: 252 MQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIF 311
MIE S+ Q+EE+GDGT VII
Sbjct: 74 ----------------------------SMIEL---------SRTQDEEVGDGTTSVIIL 96
Query: 312 AGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSA 371
AG +L A+ L + P+ I+ YK AL L +L ++ DV + + K I+S
Sbjct: 97 AGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISI--PVDVNDDAAMLKLIQSC 154
Query: 372 IMSKQYGN-EDFLTDLITKACVSILPD-GSSSFNVD---NVRITKILGSGLFNSEIVQGM 426
I +K D + DL A ++ D G+ +D ++ KI G + +S +++G+
Sbjct: 155 IGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGV 214
Query: 427 VFKRSV 432
+ + V
Sbjct: 215 MINKDV 220
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525 |
| >gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 5e-23
Identities = 66/258 (25%), Positives = 105/258 (40%), Gaps = 51/258 (19%)
Query: 476 DELGD--TAVVVFK---LEAAESRIA-----TLVIRG---ATE---NYMDDIERAVDDGV 519
+E+GD T VV LE AE I T +IRG A E ++++ V D
Sbjct: 57 EEVGDGTTTAVVLAGELLEEAEKLIEAGIHPTDIIRGYELALEIALKALEELSIPVSDDD 116
Query: 520 NTFKGITKVFVKTLAENTGVKSNEVISKL-----------YSAHNEG--KKTYGFDINGE 566
+ + + + + +E++ KL + N G K G + E
Sbjct: 117 EDLLNVARTSLNS---KISSRESELLGKLVVDAVLLIIEKFDVGNIGVIKIEGG---SLE 170
Query: 567 NSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVL 626
+S +I+ GI+ Y + L+ KI + CP++ TE
Sbjct: 171 DSELIE----GIV-------LDKGYLSPDMPKRLE--NPKILLLDCPLEYEKTEKVIIST 217
Query: 627 IKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSK 686
+ + + EE QL ++ I D G N+V+ D+ALH+L K G++ +R K
Sbjct: 218 AEELE---RLLEAEEKQLLPLLEKIVDAGVNLVIIQKGIDDLALHFLAKNGILALRRVKK 274
Query: 687 FDLRRLCKAVNATALPRL 704
DL RL KA AT + L
Sbjct: 275 EDLERLAKATGATVVSSL 292
|
This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481 |
| >gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-22
Identities = 69/243 (28%), Positives = 116/243 (47%), Gaps = 51/243 (20%)
Query: 191 RNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGS 250
NI+AC+ AD VRT GP GM+K++++ K+ ++ND ATI++ L+I HPAAK
Sbjct: 20 SNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAK------ 73
Query: 251 QMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVII 310
LV+ ++ Q+ E+GDGT V++
Sbjct: 74 --------------------TLVDI------------------AKSQDAEVGDGTTSVVV 95
Query: 311 FAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTC-FEVKDVRNV-ENVTKGI 368
AG L A + G+ P I+ GY+ AL +E + + + +D E + K
Sbjct: 96 LAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCA 155
Query: 369 KSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMV 427
+A+ SK +E +F ++ A +S+ D ++D + I K+ G L +S++V G+
Sbjct: 156 ATALNSKLIASEKEFFAKMVVDAVLSLDDD----LDLDMIGIKKVPGGSLEDSQLVNGVA 211
Query: 428 FKR 430
FK+
Sbjct: 212 FKK 214
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 522 |
| >gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 3e-19
Identities = 69/245 (28%), Positives = 111/245 (45%), Gaps = 55/245 (22%)
Query: 192 NISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQ 251
NI+AC A+ ++T GP GM+K+++ K V+ND ATI++ L+I HPAAK
Sbjct: 23 NINACVAIAEALKTTLGPRGMDKLIVGSNGKATVSNDGATILKLLDIVHPAAK------- 75
Query: 252 MQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIF 311
LV+ ++ Q+ E+GDGT V+I
Sbjct: 76 -------------------TLVDI------------------AKSQDSEVGDGTTSVVIL 98
Query: 312 AGALLVNADNLLRMGLTPSEIVNGYK----LALAKTLEILPTLTCFEVKDVRNVENVTKG 367
AG LL A + G+ P I+ GY+ LA+ K EI T+ + E + K
Sbjct: 99 AGELLKEAKPFIEEGVHPQLIIRGYREALSLAIEKIKEIAVTID---SEKGEQRELLEKC 155
Query: 368 IKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGM 426
+A+ SK + +F + +I A +S+ D + + K+ G L +S +V G+
Sbjct: 156 AATALSSKLIAHNKEFFSKMIVDAVLSLDRDDLDL---KLIGVKKVQGGALEDSVLVNGV 212
Query: 427 VFKRS 431
FK++
Sbjct: 213 AFKKT 217
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 523 |
| >gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 1e-17
Identities = 62/254 (24%), Positives = 93/254 (36%), Gaps = 36/254 (14%)
Query: 476 DELGD--TAVVVFK---LEAAESRIA-----TLVIRGATENYMDDIERAVDDGVNTFKGI 525
DE GD T VV L+ AE IA T++ RG AV+ V K I
Sbjct: 79 DEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRG--------YRLAVEKAVEELKEI 130
Query: 526 TKVFVKTLAENTGVKSNEVISKLYSAHNEG----------KKTYGFDINGENSSVIDAAE 575
K V E + V SK SA+++ +K + + ++ +
Sbjct: 131 AKP-VSDSEEELKIAITSVASK--SANSDEEIGELVVEAVEKVGKEQSDLDGIIIVKESG 187
Query: 576 AGILDLYLTKMWALK--YATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADEL 633
+L + + Y + + KI + ++I E ++I S L
Sbjct: 188 GSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPELPLEIVISSGKPL 247
Query: 634 MKFSRGEE-NQLEEQIKAIADTGANVVVAGAK-FGDMALHYLNKYGLMGVRLNSKFDL-R 690
+ + EE L + I GANVVV A D+A YL ++ R K DL
Sbjct: 248 LIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGE 307
Query: 691 RLCKAVNATALPRL 704
RL K A + L
Sbjct: 308 RLAKLGGAKIVSVL 321
|
Length = 524 |
| >gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 1e-17
Identities = 79/334 (23%), Positives = 140/334 (41%), Gaps = 90/334 (26%)
Query: 200 ADTVRTAYGPNGMNKIVI--NHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEM 257
D V+T GP GM+KI+ + VTND ATI++ + +++PAAK+++ S++Q++E+
Sbjct: 26 GDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQDDEV 85
Query: 258 GDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLV 317
GDGT V + A LL A+ L+ HP
Sbjct: 86 GDGTTSVTVLAAELLREAEKLVAQKIHPQT------------------------------ 115
Query: 318 NADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVK--------DVRNVENVTKGIK 369
I+ GY++A A E L + + + D+ N+ T +
Sbjct: 116 --------------IIEGYRMATAAAREALLS-SAVDHSSDEEAFREDLLNIARTT--LS 158
Query: 370 SAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFK 429
S I+++ +++ +L A + + S N+D ++I K LG L +S + +G +
Sbjct: 159 SKILTQ---DKEHFAELAVDAVLRL----KGSGNLDAIQIIKKLGGSLKDSYLDEGFLLD 211
Query: 430 RSVEGDITKQ-TKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKL 488
+ + + K+ AKI + P+D T + K + V VD A ++
Sbjct: 212 KKIGVNQPKRIENAKILIANTPMD--TDKIKI--------FGAKVRVDSTAKVA----EI 257
Query: 489 EAAESRIATLVIRGATENYMDDIERAVDDGVNTF 522
E AE E + +E+ + G+N F
Sbjct: 258 EEAEK-----------EKMKNKVEKILKHGINCF 280
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 517 |
| >gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 5e-17
Identities = 81/324 (25%), Positives = 141/324 (43%), Gaps = 73/324 (22%)
Query: 201 DTVRTAYGPNGMNKIVI-NHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGD 259
D V++ GP GM+KI+ + + VTND ATI++ + +++PAAK+++ S++Q++E+GD
Sbjct: 28 DLVKSTLGPKGMDKILQSASSNTIMVTNDGATILKSIGLDNPAAKVLVNISKVQDDEVGD 87
Query: 260 GTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNA 319
GT V + A LL A+ L+ HP + II G ++ A
Sbjct: 88 GTTSVTVLAAELLREAEKLINQKIHP--QTIIEGYRL----------------------A 123
Query: 320 DNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN 379
LT S + N + +D+ N+ T + S I+S+ +
Sbjct: 124 TKAALDALTKSAVDNSSDKTKFR-------------EDLINIARTT--LSSKILSQ---H 165
Query: 380 EDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQ 439
+D L A + + S N++ ++I KILG L +S + +G + + + + K+
Sbjct: 166 KDHFAQLAVDAVLRL----KGSTNLEAIQIIKILGGKLSDSFLDEGFILAKKIGVNQPKR 221
Query: 440 T-KAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATL 498
AKI + +D T + K + V VD A +LE AE
Sbjct: 222 IENAKILIANTTMD--TDKVKI--------FGSRVRVDSTAKLA----ELEKAER----- 262
Query: 499 VIRGATENYMDDIERAVDDGVNTF 522
E + +E+ + G+N F
Sbjct: 263 ------EKMKEKVEKILKHGINCF 280
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 518 |
| >gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 7e-17
Identities = 39/97 (40%), Positives = 53/97 (54%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA+ P+++ TE + I S D+L F EE L+E + IADTGANVV
Sbjct: 227 ENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQ 286
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNAT 699
D+A HYL K G++ VR K D+ +L +A A
Sbjct: 287 KGIDDLAQHYLAKAGILAVRRVKKSDMEKLARATGAK 323
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517 |
| >gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 8e-17
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 7/102 (6%)
Query: 200 ADTVRTAYGPNGMNKIVI-----NHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQE 254
AD V+T GP GM+KI+ + VTND ATI++ + +++PAAK+++ S+ Q+
Sbjct: 35 ADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAKILVDISKTQD 94
Query: 255 EEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQM 296
EE+GDGT V++ AG LL A+ LL HP + II G +M
Sbjct: 95 EEVGDGTTSVVVLAGELLREAEKLLDQKIHP--QTIIEGWRM 134
|
Length = 533 |
| >gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-15
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 47/180 (26%)
Query: 464 ASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFK 523
+LG A+ V ++GD +V F + T+++RG TE+ +D++ERA++D +
Sbjct: 333 PEDLGEAELVEERKVGDDKMV-FVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVA 391
Query: 524 GIT------------------------------------------KVFVKTLAENTGVKS 541
+ +TLAEN G+
Sbjct: 392 DALEDGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDP 451
Query: 542 NEVISKLYSAHNEGKKTYGFDI-NGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
+ + +L +AH +G K G D+ GE V+D E G+++ K A+K AT AA IL
Sbjct: 452 IDTLVELRAAHEKGNKNAGLDVYTGE---VVDMLEKGVIEPLRVKKQAIKSATEAATMIL 508
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517 |
| >gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 2e-15
Identities = 56/220 (25%), Positives = 81/220 (36%), Gaps = 60/220 (27%)
Query: 427 VFKRSVEGDITKQTKAKIAVYTCPVDIATTETKTPPAASELGY--ADSVAVDELGDTAVV 484
V K + + K AKI ++ + T LG A V + GD +
Sbjct: 300 VKKEDLGERLAKLGGAKI--------VSVLKDLTT---IVLGEGAAGLVEETKTGDYDME 348
Query: 485 VFKL-EAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------- 527
+ +A +AT+++RGATE +D+ ER ++D +N + +
Sbjct: 349 KLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAA 408
Query: 528 ---------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYG 560
+ LAEN G+ EV+SKL SAH YG
Sbjct: 409 LRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHAT--TNYG 466
Query: 561 FDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
D D EAGI+D K ALK A AA +L
Sbjct: 467 IDAFTGEYED-DMIEAGIIDPLKVKRSALKNAAEAAGLLL 505
|
Length = 524 |
| >gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 8e-15
Identities = 66/244 (27%), Positives = 106/244 (43%), Gaps = 23/244 (9%)
Query: 476 DELGD--TAVVVFK---LEAAESRI-----ATLVIRG---ATENYMDDIER-AVDDGVNT 521
+E+GD T VV LE AE + T++I G A E ++ I+ A
Sbjct: 84 EEVGDGTTTAVVLAGELLEKAEDLLEQDIHPTVIIEGYRKAAEKALEIIDEIATKISPED 143
Query: 522 FKGITKVFVKTL-AENTGVKSNEVISKL------YSAHNEGKKTYGFDINGENSSVIDAA 574
+ KV +L ++ + + + ++ L A G Y D+ +N ++
Sbjct: 144 RDLLKKVAETSLTSKASAEVAKDKLANLVVEAVKQVAELRGDGKYYVDL--DNIKIVKKT 201
Query: 575 EAGILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELM 634
I D L + + + AKIA+ P+++ TE + I D++
Sbjct: 202 GGSIDDTELVEGIVVDKEVVHPGMPKRVENAKIALLDAPLEVEKTEIDAEIRITDPDQIQ 261
Query: 635 KFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCK 694
KF EE L+E + IAD GANVV+ D+A HYL K G++ VR K D+ +L +
Sbjct: 262 KFLDQEEAMLKEMVDKIADAGANVVICQKGIDDVAQHYLAKAGILAVRRVKKSDIEKLAR 321
Query: 695 AVNA 698
A A
Sbjct: 322 ATGA 325
|
Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519 |
| >gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 9e-15
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 45/180 (25%)
Query: 464 ASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFK 523
S+LGYA V ++G+ +V F + T+++RG TE+ +D++ER++ D ++
Sbjct: 336 ESDLGYAGLVEERKVGEDKMV-FVEGCKNPKAVTILLRGGTEHVVDELERSLQDALHVVA 394
Query: 524 ------------------------------------GITK------VFVKTLAENTGVKS 541
I + LAEN G+
Sbjct: 395 SALEDGKVVAGGGAVEIEIALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDP 454
Query: 542 NEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601
+ + +L + H +G K G IN + D E G+++ K A+K AT AA IL+
Sbjct: 455 IDALVELRAKHEKGNKNAG--INVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILR 512
|
Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519 |
| >gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 7e-13
Identities = 66/260 (25%), Positives = 105/260 (40%), Gaps = 75/260 (28%)
Query: 408 RITKILGSG---LFNSEIVQGMVFKRSVEGD--------------ITKQTKAKIAVYTCP 450
RI KIL +G + + + M K VE I K T A +
Sbjct: 266 RIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLVS---- 321
Query: 451 VDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDD 510
+A E + S LG A+ V + +GD +++ K S A++++RGA + +D+
Sbjct: 322 -TLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSS-ASIILRGANDFMLDE 379
Query: 511 IERAVDDGVNTFK------------GITK------------------------------V 528
+ER++ D + K G + V
Sbjct: 380 MERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLV 439
Query: 529 FVKTLAENTGVKSNEVISKLYSAHNEGK--------KTYGFDINGENSSVIDAAEAGILD 580
KTLA N + E+++KL + H + K YG D+ N V D EAG+L+
Sbjct: 440 IPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLI--NGKVRDNLEAGVLE 497
Query: 581 LYLTKMWALKYATSAANTIL 600
++K+ +LK+AT AA TIL
Sbjct: 498 PTVSKIKSLKFATEAAITIL 517
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 527 |
| >gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 5e-12
Identities = 65/256 (25%), Positives = 107/256 (41%), Gaps = 65/256 (25%)
Query: 408 RITKILGSG---LFNSEIVQGMVFKRSVEGDI--TKQTK-------AKIAVYTCPVDIAT 455
RI KIL +G + + + M K VE ++ K AK T +A
Sbjct: 270 RIKKILDAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTLVSTLAD 329
Query: 456 TETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAV 515
E + AS LG+AD V + + D ++ K S A++++RGA + +D++ER++
Sbjct: 330 LEGEETFDASYLGFADEVVQERIADDECILIKGTKKRS-SASIILRGANDFMLDEMERSL 388
Query: 516 DDGVNTFKGITK------------------------------------------VFVKTL 533
D + K + + KTL
Sbjct: 389 HDALCVVKRTLESNSVVPGGGAVEAALSIYLENFATTLGSREQLAIAEFAEALLIIPKTL 448
Query: 534 AENTGVKSNEVISKLYSAHN--------EGKKTYGFDINGENSSVIDAAEAGILDLYLTK 585
A N S E+++KL + H + K YG D++ N + D EAG+L+ ++K
Sbjct: 449 AVNAAKDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLS--NGKIRDNKEAGVLEPAVSK 506
Query: 586 MWALKYATSAANTILQ 601
+ +LK+AT AA TIL+
Sbjct: 507 VKSLKFATEAAITILR 522
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536 |
| >gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 3e-11
Identities = 63/263 (23%), Positives = 90/263 (34%), Gaps = 95/263 (36%)
Query: 476 DELGD--TAVVVFK---LEAAESRIA-----TLVIRGATENYMDDIERAVDDGVNTFKGI 525
DE+GD T VVV L+ AE +A T +IRG E+AV+ +
Sbjct: 76 DEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRG--------YEKAVEKALE----- 122
Query: 526 TKVFVKTLAENTGVKSNEVI---------SKLYSAHNE-------------GKKTYGFDI 563
+K +A V+ E + SKL S ++ GK+ D+
Sbjct: 123 ---ILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDL 179
Query: 564 NGENSSVIDAAEAGILDLYLTK--MWALKYATSAANTILQQTKAKIAVYTCPVDIATTET 621
V + D L ++ Y + L+ AKI + C ++
Sbjct: 180 G--VIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLE--NAKILLLDCKLE------ 229
Query: 622 KGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGV 681
VV+A D ALHYL K G+M V
Sbjct: 230 -----------------------------------YVVIAEKGIDDEALHYLAKLGIMAV 254
Query: 682 RLNSKFDLRRLCKAVNATALPRL 704
R K DL R+ KA AT + RL
Sbjct: 255 RRVRKEDLERIAKATGATIVSRL 277
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464 |
| >gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 1e-10
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 657 NVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
VV+A D+ALHYL K G+M VR K DL R+ +A AT + L
Sbjct: 94 YVVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIVSSL 141
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. Length = 209 |
| >gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 44/150 (29%)
Query: 493 SRIATLVIRGATENYMDDIERAVDDGV--------------------------------- 519
++ T+++RG E ++++ ER++ D +
Sbjct: 365 AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKNKKIVAGGGAIEMELSKCLRDYSKT 424
Query: 520 ---------NTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSV 570
N F +V + L EN G S E+++KL SAH +G K YG DIN E+ +
Sbjct: 425 IDGKQQLIINAFAKALEVIPRQLCENAGFDSIEILNKLRSAHAKGGKWYGVDINTED--I 482
Query: 571 IDAAEAGILDLYLTKMWALKYATSAANTIL 600
D E + + L K+ ALK AT AA TIL
Sbjct: 483 GDNFENFVWEPALVKINALKAATEAACTIL 512
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 523 |
| >gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 2e-10
Identities = 53/243 (21%), Positives = 101/243 (41%), Gaps = 51/243 (20%)
Query: 188 AVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLII 247
A+ NI+A + D ++T GP G K++++ + +T D ++ E+
Sbjct: 17 ALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEM----------- 65
Query: 248 LGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNF 307
I+HP A +I + Q+E GDGT
Sbjct: 66 ---------------------------------QIQHPTASMIARAATAQDEITGDGTTS 92
Query: 308 VIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT-- 365
+I G LL A+ + G+ P I G+++A + LE L F+VK V+
Sbjct: 93 TVILIGELLKQAERYILEGVHPRIITEGFEIARKELLEFLDK---FKVKTEDEVDREFLL 149
Query: 366 KGIKSAIMSKQY-GNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQ 424
++++ +K D LT+++ A ++I DG ++ V I ++ ++ +++
Sbjct: 150 NVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDG-EDIDLFMVEIMEMKHKSATDTTLIR 208
Query: 425 GMV 427
G+V
Sbjct: 209 GLV 211
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531 |
| >gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 4e-10
Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 49/192 (25%)
Query: 452 DIATTETKTPPAASELGYADSVAVDELGDTAVVVFK-LEAAESRIATLVIRGATENYMDD 510
+IA+T P +LG + +G+ ++ F + A E+ T+V+RGA++ +D+
Sbjct: 320 EIASTFDH--PELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEA--CTIVLRGASQQILDE 375
Query: 511 IER-------------------------------AVDDGVNTFKGITKV----FVKTL-- 533
ER AV++ G + F K L
Sbjct: 376 AERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQ 435
Query: 534 -----AENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWA 588
A+N G S E++++L +AH G T G D+ +V D E GI + + K
Sbjct: 436 LPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDM--RKGTVGDMKELGITESFKVKRQV 493
Query: 589 LKYATSAANTIL 600
L A+ AA IL
Sbjct: 494 LLSASEAAEMIL 505
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 517 |
| >gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 5e-10
Identities = 42/109 (38%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 603 TKAKIAVYTCPVDIATTETK---GT-VLIKSADELMKFSRGEENQLEEQIKAIADTGANV 658
AKIA +D +TK G V++ ++L K + E + +E+IK I GANV
Sbjct: 222 KNAKIAC----LDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANV 277
Query: 659 VVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVST 707
V+ DM L Y + G M VR K DLRR+ KA AT LVST
Sbjct: 278 VLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGAT----LVST 322
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 527 |
| >gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 5e-10
Identities = 47/207 (22%), Positives = 87/207 (42%), Gaps = 50/207 (24%)
Query: 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLI 246
+A+ NISA K D ++T GP G K++++ + +T D ++ E++I+HP A +I
Sbjct: 12 QALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMI 71
Query: 247 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTN 306
A+ Q++ GDGT
Sbjct: 72 ----------------------------------------ARAAT----AQDDITGDGTT 87
Query: 307 FVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTL-TCFEVKDVRNVENVT 365
++ G LL A+ ++ G+ P I G++LA K L+ L + E+ R E +
Sbjct: 88 SNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDR--ELLL 145
Query: 366 KGIKSAIMSKQYGNEDFLTDLITKACV 392
++++ +K + + L D +T+ V
Sbjct: 146 SVARTSLRTKLHAD---LADQLTEIVV 169
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 484 |
| >gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 1e-09
Identities = 45/130 (34%), Positives = 64/130 (49%), Gaps = 12/130 (9%)
Query: 582 YLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETK---GT-VLIKSADELMKFS 637
YL K +AL ++ + KAKIA +D + K G +++ +L +
Sbjct: 205 YLVKGYALNCTRASQQMPKRIKKAKIAC----LDFNLQKAKMALGVQIVVDDPAKLEQIR 260
Query: 638 RGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVN 697
+ E + +E+IK I D GANVV+ DM L Y + G MGVR K DL+R+ KA
Sbjct: 261 QREADITKERIKKILDAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATG 320
Query: 698 ATALPRLVST 707
T LVST
Sbjct: 321 GT----LVST 326
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536 |
| >gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 3e-09
Identities = 52/185 (28%), Positives = 78/185 (42%), Gaps = 53/185 (28%)
Query: 462 PAASELGYADSVAVDELGDTAVVVF----KLEAAESRIATLVIRGATENYMDDIER---- 513
P +LG+ D + +G+ ++ F K EA T+V+RGA+ + +D+ ER
Sbjct: 340 PEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEAC-----TIVLRGASTHILDEAERSLHD 394
Query: 514 ---------------------------AVDDGVNTFKG----ITKVFVKTL-------AE 535
AV++ +G + F K L A+
Sbjct: 395 ALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIAD 454
Query: 536 NTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSA 595
N G S E++SKL + H +G KT G D+ E +V D E GI + Y K+ L AT A
Sbjct: 455 NGGYDSAELVSKLRAEHYKGNKTAGIDM--EKGTVGDMKELGITESYKVKLSQLCSATEA 512
Query: 596 ANTIL 600
A IL
Sbjct: 513 AEMIL 517
|
Length = 533 |
| >gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 8e-09
Identities = 31/99 (31%), Positives = 48/99 (48%)
Query: 605 AKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAK 664
AKIA+ TCP + +TK + I S ++ K E+ E ++ + D GAN+V+
Sbjct: 237 AKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWG 296
Query: 665 FGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPR 703
F D A H L + GL VR ++ + A +PR
Sbjct: 297 FDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGRIVPR 335
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 526 |
| >gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 33/99 (33%), Positives = 49/99 (49%)
Query: 605 AKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAK 664
AKIA+ TCP + +TK + I S +E K + E+ + +E I I +GAN+V+
Sbjct: 241 AKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFKEMIDDIKKSGANIVICQWG 300
Query: 665 FGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPR 703
F D A H L + L VR +L + A +PR
Sbjct: 301 FDDEANHLLLQNDLPAVRWVGGQELELIAIATGGRIVPR 339
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 532 |
| >gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 45/151 (29%)
Query: 493 SRIATLVIRGATENYMDDIERAVDDGV-------------------------------NT 521
++ T+++RG E ++++ ER++ D + T
Sbjct: 363 AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRT 422
Query: 522 FKGITKVFVK-----------TLAENTGVKSNEVISKLYSAHNEGKKT-YGFDINGENSS 569
G ++ + L +N G + ++++KL H +G YG DIN E
Sbjct: 423 IAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEG-- 480
Query: 570 VIDAAEAGILDLYLTKMWALKYATSAANTIL 600
+ D EA + + L K+ AL AT AA IL
Sbjct: 481 IADNFEAFVWEPSLVKINALTAATEAACLIL 511
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 522 |
| >gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 5e-07
Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 47/183 (25%)
Query: 462 PAASELGYADSVAVDELGDTAVVVFK-LEAAESRIATLVIRGATENYMDDIERAVDDGVN 520
P +LG D + +G+ ++ F ++A E+ T+V+RGAT+ +D+ ER++ D +
Sbjct: 328 PELVKLGSCDLIEEIMIGEDKLLKFSGVKAGEA--CTIVLRGATQQILDEAERSLHDALC 385
Query: 521 TFKGITK-----------------------------------VFVKTL-------AENTG 538
K F + L A+N G
Sbjct: 386 VLSQTVKESRTVLGGGCAEMLMSKAVDTEAQNIPGKKALAVEAFARALRQLPTILADNAG 445
Query: 539 VKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANT 598
S+E++++L +AH G T G D+N ++ D + GI++ Y K + A+ AA
Sbjct: 446 FDSSELVAQLRAAHYNGNSTMGLDMN--EGTIADMRQLGIVESYKLKRAVVSSASEAAEV 503
Query: 599 ILQ 601
+L+
Sbjct: 504 LLR 506
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 518 |
| >gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 9e-07
Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 44/176 (25%)
Query: 467 LGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV------- 519
LG AD V LGD +V + T+++RG+ + +D+ ER++ D +
Sbjct: 334 LGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLV 393
Query: 520 ------------------------NTFKGITKVFVK-----------TLAENTGVKSNEV 544
T G+ + V+ TLAEN G+ +
Sbjct: 394 KKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISI 453
Query: 545 ISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
+++L + H +G+K G IN ++ + E ++ L A+ AT IL
Sbjct: 454 VTELRNRHAQGEKNAG--INVRKGAITNILEENVVQPLLVSTSAITLATETVRMIL 507
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 515 |
| >gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 45/158 (28%)
Query: 486 FKLEAAESRIATLVIRGATENYMDDIERAVDDGVN------------------------- 520
F E + + T+++RGA+++ ++++ER + D +
Sbjct: 317 FITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHA 376
Query: 521 ------TFKGITK-----------VFVKTLAENTGVKSNEVISKLYSAH-NEGKKTYGFD 562
+ +G+ + V +TLA+N G +++L + H T+G
Sbjct: 377 LSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWG-- 434
Query: 563 INGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
I+GE ++D E GI D K K A AA +L
Sbjct: 435 IDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLL 472
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 480 |
| >gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 45/179 (25%), Positives = 67/179 (37%), Gaps = 51/179 (28%)
Query: 467 LGYADSVAVDELGD---TAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDG----- 518
LGYA V LG+ T F + T++I+G ++ + I+ A+ DG
Sbjct: 302 LGYAGLVYERTLGEEKYT----FIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVK 357
Query: 519 --------------------------VNTFKGITKVFV-----------KTLAENTGVKS 541
+ KG K+ V KTLAEN+G+
Sbjct: 358 NAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDV 417
Query: 542 NEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
E + KL + EG + G D++ +D GI D Y K L AT A+ +L
Sbjct: 418 QETLVKLQDEYAEGGQVGGVDLDTGEP--MDPESEGIWDNYSVKRQILHSATVIASQLL 474
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 484 |
| >gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 38/180 (21%), Positives = 70/180 (38%), Gaps = 44/180 (24%)
Query: 464 ASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---- 519
A +LG A+ V + ++ + T+V+RG+ + +D+ ER++ D +
Sbjct: 332 ADKLGSAELVEEVDSDGGKIIKITGIQNAGKTVTVVVRGSNKLVIDEAERSLHDALCVIR 391
Query: 520 ---------------------------NTFKGITKVFVK-----------TLAENTGVKS 541
T KG+ V+ TLAEN G+
Sbjct: 392 CLVKKRGLIAGGGAPEIEIARRLSKYARTMKGVESYCVRAFADALEVIPYTLAENAGLNP 451
Query: 542 NEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601
+V+++L + H G+KT G I+ + + E +L L A+ A+ +IL+
Sbjct: 452 IKVVTELRNRHANGEKTAG--ISVRKGGITNMLEEHVLQPLLVTTSAITLASETVRSILK 509
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 517 |
| >gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 518 GVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAG 577
GV F V KTLAEN+G + + + KL H+EG + G D+N ID G
Sbjct: 437 GVEAFANALLVIPKTLAENSGFDAQDTLVKLEDEHDEGGEVVGVDLNTGEP--IDPEIKG 494
Query: 578 ILDLYLTKMWALKYATSAANTIL 600
I D Y K ++ AT A+ +L
Sbjct: 495 IWDNYRVKKQLIQSATVIASQLL 517
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531 |
| >gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 380 EDFLTDLITKACVSILPD---GSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSV--EG 434
D L L+ KA ++ PD G V+I KI G +SE+V G+VF ++V +
Sbjct: 20 LDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKR 79
Query: 435 DITKQTKAKIAVYTCPVDIATTETK 459
+K +I + P++ E K
Sbjct: 80 MPSKIKNPRILLLQGPLEYQRVENK 104
|
Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins. Length = 261 |
| >gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-04
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 200 ADTVRTAYGPNGMNKIVINHIDKLF----VTNDAATIIRELEIEHP----AAKLIILGSQ 251
AD V+ GP G N V+ I+K F +T D T+ +E+E+E P A+L+ +
Sbjct: 21 ADAVKVTLGPKGRN--VV--IEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVAS 76
Query: 252 MQEEEMGDGTNFVIIFAGALL----------VNADNLLRMIEHPAAKLI 290
+ GDGT + A A++ N +L R IE ++
Sbjct: 77 KTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVV 125
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520 |
| >gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 18/83 (21%)
Query: 200 ADTVRTAYGPNGMNKIVINHIDKLF----VTNDAATIIRELEIEHPAAKLIILGSQMQEE 255
AD V+ GP G N + IDK F +T D +I +E+E+E P LG+Q+ +E
Sbjct: 23 ADAVKVTLGPKGRNVV----IDKSFGAPTITKDGVSIAKEIELEDPFEN---LGAQLVKE 75
Query: 256 -------EMGDGTNFVIIFAGAL 271
GDGT + A AL
Sbjct: 76 VASKTNDVAGDGTTTATVLAQAL 98
|
Length = 542 |
| >gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 46/170 (27%)
Query: 475 VDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFK----------- 523
V ++GD F E + + T+++RGA+++ +++IER + D + +
Sbjct: 348 VKKIGDE-YFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPG 406
Query: 524 -GITKVFV------------------------------KTLAENTGVKSNEVISKLYSAH 552
G T++ V +TLA+N GV +++L + H
Sbjct: 407 GGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKH 466
Query: 553 -NEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601
EG T+G I+GE ++D E GI + K+ K A +A +L+
Sbjct: 467 AQEGNCTWG--IDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLR 514
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525 |
| >gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 18/84 (21%)
Query: 200 ADTVRTAYGPNGMNKIVINHIDKLF----VTNDAATIIRELEIEHPAAKLIILGSQMQEE 255
AD V+ GP G N + IDK F +TND TI +E+E+E +G+QM E
Sbjct: 24 ADAVKVTLGPKGRNVV----IDKSFGAPTITNDGVTIAKEIELEDKFEN---MGAQMVRE 76
Query: 256 E-------MGDGTNFVIIFAGALL 272
GDGT + A A++
Sbjct: 77 VASKTNDVAGDGTTTATVLAQAIV 100
|
Length = 541 |
| >gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 8e-04
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 200 ADTVRTAYGPNGMNKIVINHIDKLF----VTNDAATIIRELEIEHP----AAKLIILGSQ 251
AD V+ GP G N + ++K F +T D T+ +E+E+E A+L+ +
Sbjct: 22 ADAVKVTLGPKGRNVV----LEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVAS 77
Query: 252 MQEEEMGDGTNFVIIFAGAL 271
+ GDGT + A A+
Sbjct: 78 KTNDVAGDGTTTATVLAQAI 97
|
This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of pfam00118 [Protein fate, Protein folding and stabilization]. Length = 524 |
| >gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 18/84 (21%)
Query: 200 ADTVRTAYGPNGMNKIVINHIDKLF----VTNDAATIIRELEIEHPAAKLIILGSQMQEE 255
A+ V+ GP G N + ++K F +T D T+ +E+E+E +G+QM +E
Sbjct: 24 ANAVKVTLGPKGRNVV----LEKSFGAPRITKDGVTVAKEIELEDKFEN---MGAQMVKE 76
Query: 256 -------EMGDGTNFVIIFAGALL 272
GDGT + A A++
Sbjct: 77 VASKTNDLAGDGTTTATVLAQAIV 100
|
Length = 544 |
| >gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 604 KAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGA 663
KAKI + + T+ +++ ++ + R E + K I +G NV++
Sbjct: 221 KAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQK 280
Query: 664 KF-----GDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNAT 699
D+ALH+L K +M V+ + ++ +CK +
Sbjct: 281 SILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIGCK 321
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 515 |
| >gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.002
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 530 VKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTK--MW 587
++ +AEN GV + V+ K+ E +G+D +D EAGI+D TK
Sbjct: 448 LRQIAENAGVDGSVVVEKVL----ESPDGFGYD--AATGEYVDMIEAGIID--PTKVVRS 499
Query: 588 ALKYATSAANTIL 600
AL+ A S A+ +L
Sbjct: 500 ALQNAASVASLLL 512
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520 |
| >gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 604 KAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVV---- 659
KAKI + + T+ + +++ ++ + + E + +K I TG NV+
Sbjct: 222 KAKIGLIQFQISPPKTDMENQIIVNDYAQMDRVLKEERAYILNIVKKIKKTGCNVLLIQK 281
Query: 660 -VAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNA 698
+ D+ALH+L K +M V+ + ++ +CK +
Sbjct: 282 SILRDAVNDLALHFLAKMKIMVVKDIEREEIEFICKTIGC 321
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 517 |
| >gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 181 HFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEH 240
HF+ A+ + + AD V GP G N ++ + + ND T+ +E+E+E
Sbjct: 60 HFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELED 119
Query: 241 P----AAKLIILGSQMQEEEMGDGTNFVIIFAGALLV----------NADNLLRMIEHPA 286
P AKL+ + + GDGT ++ A L+ N + R IE A
Sbjct: 120 PVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTA 179
Query: 287 AKLI----ILGSQMQEEEMGD 303
L+ + ++++ E+ D
Sbjct: 180 KALVKELKKMSKEVEDSELAD 200
|
Length = 600 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 745 | |||
| KOG0361|consensus | 543 | 100.0 | ||
| cd03342 | 484 | TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper | 100.0 | |
| TIGR02339 | 519 | thermosome_arch thermosome, various subunits, arch | 100.0 | |
| KOG0363|consensus | 527 | 100.0 | ||
| TIGR02347 | 531 | chap_CCT_zeta T-complex protein 1, zeta subunit. M | 100.0 | |
| PTZ00212 | 533 | T-complex protein 1 subunit beta; Provisional | 100.0 | |
| TIGR02346 | 531 | chap_CCT_theta T-complex protein 1, theta subunit. | 100.0 | |
| cd03339 | 526 | TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha | 100.0 | |
| cd03336 | 517 | TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper | 100.0 | |
| TIGR02344 | 525 | chap_CCT_gamma T-complex protein 1, gamma subunit. | 100.0 | |
| cd03340 | 522 | TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero | 100.0 | |
| TIGR02345 | 522 | chap_CCT_eta T-complex protein 1, eta subunit. Mem | 100.0 | |
| TIGR02343 | 532 | chap_CCT_epsi T-complex protein 1, epsilon subunit | 100.0 | |
| TIGR02342 | 517 | chap_CCT_delta T-complex protein 1, delta subunit. | 100.0 | |
| cd03335 | 527 | TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| cd03337 | 480 | TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| cd03338 | 515 | TCP1_delta TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| TIGR02341 | 519 | chap_CCT_beta T-complex protein 1, beta subunit. M | 100.0 | |
| cd03343 | 517 | cpn60 cpn60 chaperonin family. Chaperonins are inv | 100.0 | |
| cd03341 | 472 | TCP1_theta TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| TIGR02340 | 536 | chap_CCT_alpha T-complex protein 1, alpha subunit. | 100.0 | |
| KOG0358|consensus | 534 | 100.0 | ||
| cd00309 | 464 | chaperonin_type_I_II chaperonin families, type I a | 100.0 | |
| KOG0362|consensus | 537 | 100.0 | ||
| COG0459 | 524 | GroL Chaperonin GroEL (HSP60 family) [Posttranslat | 100.0 | |
| PTZ00114 | 555 | Heat shock protein 60; Provisional | 100.0 | |
| PRK00013 | 542 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| PRK12849 | 542 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| PRK12852 | 545 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| PRK12850 | 544 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| cd03344 | 520 | GroEL GroEL_like type I chaperonin. Chaperonins ar | 100.0 | |
| PRK12851 | 541 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| TIGR02348 | 524 | GroEL chaperonin GroL. This family consists of Gro | 100.0 | |
| PF00118 | 485 | Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon | 100.0 | |
| CHL00093 | 529 | groEL chaperonin GroEL | 100.0 | |
| PLN03167 | 600 | Chaperonin-60 beta subunit; Provisional | 100.0 | |
| PRK14104 | 546 | chaperonin GroEL; Provisional | 100.0 | |
| KOG0360|consensus | 545 | 100.0 | ||
| KOG0364|consensus | 527 | 100.0 | ||
| KOG0359|consensus | 520 | 100.0 | ||
| KOG0357|consensus | 400 | 100.0 | ||
| KOG0356|consensus | 550 | 100.0 | ||
| KOG0361|consensus | 543 | 99.97 | ||
| TIGR02344 | 525 | chap_CCT_gamma T-complex protein 1, gamma subunit. | 99.96 | |
| cd03339 | 526 | TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha | 99.96 | |
| KOG0364|consensus | 527 | 99.96 | ||
| TIGR02339 | 519 | thermosome_arch thermosome, various subunits, arch | 99.96 | |
| TIGR02343 | 532 | chap_CCT_epsi T-complex protein 1, epsilon subunit | 99.96 | |
| PTZ00212 | 533 | T-complex protein 1 subunit beta; Provisional | 99.95 | |
| cd03336 | 517 | TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper | 99.95 | |
| cd03343 | 517 | cpn60 cpn60 chaperonin family. Chaperonins are inv | 99.95 | |
| TIGR02347 | 531 | chap_CCT_zeta T-complex protein 1, zeta subunit. M | 99.95 | |
| KOG0362|consensus | 537 | 99.95 | ||
| KOG0359|consensus | 520 | 99.95 | ||
| cd03340 | 522 | TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero | 99.95 | |
| TIGR02341 | 519 | chap_CCT_beta T-complex protein 1, beta subunit. M | 99.95 | |
| cd03335 | 527 | TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape | 99.95 | |
| KOG0358|consensus | 534 | 99.94 | ||
| TIGR02342 | 517 | chap_CCT_delta T-complex protein 1, delta subunit. | 99.94 | |
| TIGR02340 | 536 | chap_CCT_alpha T-complex protein 1, alpha subunit. | 99.94 | |
| cd03334 | 261 | Fab1_TCP TCP-1 like domain of the eukaryotic phosp | 99.94 | |
| cd03338 | 515 | TCP1_delta TCP-1 (CTT or eukaryotic type II) chape | 99.94 | |
| TIGR02345 | 522 | chap_CCT_eta T-complex protein 1, eta subunit. Mem | 99.93 | |
| KOG0360|consensus | 545 | 99.93 | ||
| TIGR02346 | 531 | chap_CCT_theta T-complex protein 1, theta subunit. | 99.92 | |
| KOG0363|consensus | 527 | 99.92 | ||
| COG0459 | 524 | GroL Chaperonin GroEL (HSP60 family) [Posttranslat | 99.89 | |
| cd03342 | 484 | TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper | 99.88 | |
| PF00118 | 485 | Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon | 99.87 | |
| cd03337 | 480 | TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape | 99.85 | |
| cd03333 | 209 | chaperonin_like chaperonin_like superfamily. Chape | 99.84 | |
| cd03341 | 472 | TCP1_theta TCP-1 (CTT or eukaryotic type II) chape | 99.81 | |
| cd00309 | 464 | chaperonin_type_I_II chaperonin families, type I a | 99.81 | |
| cd03334 | 261 | Fab1_TCP TCP-1 like domain of the eukaryotic phosp | 99.81 | |
| PRK12849 | 542 | groEL chaperonin GroEL; Reviewed | 99.75 | |
| cd03344 | 520 | GroEL GroEL_like type I chaperonin. Chaperonins ar | 99.75 | |
| PRK00013 | 542 | groEL chaperonin GroEL; Reviewed | 99.74 | |
| PRK12851 | 541 | groEL chaperonin GroEL; Reviewed | 99.74 | |
| TIGR02348 | 524 | GroEL chaperonin GroL. This family consists of Gro | 99.73 | |
| cd03333 | 209 | chaperonin_like chaperonin_like superfamily. Chape | 99.73 | |
| PTZ00114 | 555 | Heat shock protein 60; Provisional | 99.72 | |
| PRK12850 | 544 | groEL chaperonin GroEL; Reviewed | 99.71 | |
| KOG0230|consensus | 1598 | 99.66 | ||
| PRK12852 | 545 | groEL chaperonin GroEL; Reviewed | 99.66 | |
| PLN03167 | 600 | Chaperonin-60 beta subunit; Provisional | 99.62 | |
| PRK14104 | 546 | chaperonin GroEL; Provisional | 99.62 | |
| CHL00093 | 529 | groEL chaperonin GroEL | 99.62 | |
| KOG0357|consensus | 400 | 99.4 | ||
| KOG0230|consensus | 1598 | 98.38 | ||
| PHA00616 | 44 | hypothetical protein | 88.47 |
| >KOG0361|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-70 Score=573.08 Aligned_cols=385 Identities=26% Similarity=0.434 Sum_probs=359.2
Q ss_pred ceeecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHH
Q psy16434 171 PAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGS 250 (745)
Q Consensus 171 ~~~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s 250 (745)
|..++++|++..+| ..++.+||++|.++++.++|||||+||||+|++..|+++|||||+||||-|++-||+||.|++++
T Consensus 5 ~ii~lkegtd~sqG-k~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlVdia 83 (543)
T KOG0361|consen 5 PIILLKEGTDPSQG-KGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLVDIA 83 (543)
T ss_pred CEEEeecccCcccC-chhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHHHHH
Confidence 57789999999999 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHH
Q psy16434 251 QMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPS 330 (745)
Q Consensus 251 ~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~ 330 (745)
++||.++||| |||||+||+|+|+++.-+++.|+||.
T Consensus 84 ~sQDaEVGDG--------------------------------------------TTSVv~la~E~lk~~Kpfiedgv~~~ 119 (543)
T KOG0361|consen 84 RSQDAEVGDG--------------------------------------------TTSVVLLAAEFLKEAKPFIEDGVHPQ 119 (543)
T ss_pred hhccccccCC--------------------------------------------ceeEeeeHHHHHHhhhhHhhcCCCHH
Confidence 9999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccccc--CcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccce
Q psy16434 331 EIVNGYKLALAKTLEILPTLTCFEVKD--VRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNV 407 (745)
Q Consensus 331 ~I~~g~~~a~~~~l~~L~~~s~~~~~~--~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I 407 (745)
.|+.+|++|...+++.|+++++.+... ..-++.|+++|.|+++||++++ .++|+++++||+..+.. ..++++|
T Consensus 120 ~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~----~l~~~mI 195 (543)
T KOG0361|consen 120 LIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDN----DLDLNMI 195 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcc----ccchhhc
Confidence 999999999999999999998774322 1236789999999999999986 79999999999998863 4678899
Q ss_pred EEEEccCCCcccceeEeeEEEeeccc-----CCceeeeCceEEEeccCCCccccccC-----------------------
Q psy16434 408 RITKILGSGLFNSEIVQGMVFKRSVE-----GDITKQTKAKIAVYTCPVDIATTETK----------------------- 459 (745)
Q Consensus 408 ~I~ki~Ggs~~dS~lv~G~~l~~~~~-----~~~~~i~nakIlil~~~Le~~k~e~k----------------------- 459 (745)
.|+|++||+++||.+|+|+.|++.|+ .+|+++.||||+++|.+||++.++.+
T Consensus 196 GIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~ 275 (543)
T KOG0361|consen 196 GIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIY 275 (543)
T ss_pred ceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999775 36999999999999999998776432
Q ss_pred -----------------------------------------------------------CCCCcccccccccEEEEEECC
Q psy16434 460 -----------------------------------------------------------TPPAASELGYADSVAVDELGD 480 (745)
Q Consensus 460 -----------------------------------------------------------~~p~a~~LG~a~~vq~~eiGd 480 (745)
.+..++.||.|+.++++.+|.
T Consensus 276 ~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~ 355 (543)
T KOG0361|consen 276 DKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLNRVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGG 355 (543)
T ss_pred HHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHHHHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcc
Confidence 567889999999999999999
Q ss_pred eeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH---------------------------------
Q psy16434 481 TAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK--------------------------------- 527 (745)
Q Consensus 481 tsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~--------------------------------- 527 (745)
++|.+|+||.. .++||+++||+-+..++|.+|++|||+++++.+++
T Consensus 356 eRyN~Fegcp~-aktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~ 434 (543)
T KOG0361|consen 356 ERYNLFEGCPK-AKTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLF 434 (543)
T ss_pred hhhhhhcCCCc-cceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHHHH
Confidence 99999999987 88999999999999999999999999999999987
Q ss_pred ---------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchh
Q psy16434 528 ---------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANT 598 (745)
Q Consensus 528 ---------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~m 598 (745)
.|||+|++|||+|.++++.||+..|++|..|+|+|++++ .+.|++...||||..||..++..|++++++
T Consensus 435 i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e--~i~dn~~~~VwEP~~VK~Nai~aateAa~l 512 (543)
T KOG0361|consen 435 INAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTE--GIADNFEKFVWEPSIVKINAITAATEAACL 512 (543)
T ss_pred HHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeeccc--chhhHHHhhccChHHHHHHHHHHHHHhhhh
Confidence 689999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred hccccccee
Q psy16434 599 ILQQTKAKI 607 (745)
Q Consensus 599 il~IDn~kI 607 (745)
++.+|..+.
T Consensus 513 IlsvDeTik 521 (543)
T KOG0361|consen 513 ILSVDETIK 521 (543)
T ss_pred eEehhhhhc
Confidence 999986544
|
|
| >cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-67 Score=595.06 Aligned_cols=380 Identities=25% Similarity=0.396 Sum_probs=353.8
Q ss_pred ccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchh
Q psy16434 178 YDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEM 257 (745)
Q Consensus 178 ~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~ 257 (745)
+.+..+| .+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||||+|+++||+++|++++|++||+++
T Consensus 4 ~~~~~~~-~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~ 82 (484)
T cd03342 4 KAEVLRR-GQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDIT 82 (484)
T ss_pred CcccccH-HHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHh
Confidence 4455666 589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy16434 258 GDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYK 337 (745)
Q Consensus 258 GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~ 337 (745)
||| |||+++||++||+++.++++.|+||..|++||+
T Consensus 83 GDG--------------------------------------------TTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~ 118 (484)
T cd03342 83 GDG--------------------------------------------TTSNVLLIGELLKQAERYIQEGVHPRIITEGFE 118 (484)
T ss_pred CCC--------------------------------------------hhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 999 999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCC
Q psy16434 338 LALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSG 416 (745)
Q Consensus 338 ~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs 416 (745)
.|++.+++.|++++.+...+ .+.+.|.++|++++++|+.+. .++|++|+++|+..++++. +.+|+++|+|+++.||+
T Consensus 119 ~a~~~~~~~L~~~s~~v~~~-~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~-~~~~~~~I~i~ki~ggs 196 (484)
T cd03342 119 LAKNKALKFLESFKVPVEID-TDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPD-EPIDLHMVEIMQMQHKS 196 (484)
T ss_pred HHHHHHHHHHHHhcccCCCC-CCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcC-CccChhHeEEEEecCCC
Confidence 99999999999998764221 367789999999999998874 7999999999999998752 37899999999999999
Q ss_pred cccceeEeeEEEeecccCC--ceeeeCceEEEeccCCCccccccC-----------------------------------
Q psy16434 417 LFNSEIVQGMVFKRSVEGD--ITKQTKAKIAVYTCPVDIATTETK----------------------------------- 459 (745)
Q Consensus 417 ~~dS~lv~G~~l~~~~~~~--~~~i~nakIlil~~~Le~~k~e~k----------------------------------- 459 (745)
++||++++|++|++++.++ |++++||+|++++++|++.+++.+
T Consensus 197 ~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~~~~~~~~~~~~lvi~~~~I~~~al~~l~~~~I~av~~~~~ 276 (484)
T cd03342 197 DSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYSVVINQKGIDPPSLDMLAKEGILALRRAKR 276 (484)
T ss_pred hhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCCccccCcEEEEEEEEeCCCccHHHHHHHHHCCCeEEEeCCH
Confidence 9999999999999999764 899999999999999999987542
Q ss_pred ------------------CCCCcccccccccEEEEEECCeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHH
Q psy16434 460 ------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNT 521 (745)
Q Consensus 460 ------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~v 521 (745)
+++++.+||+|++++++++|++++++|.|++. .+++||++||+|+.+++|.+|+++||+++
T Consensus 277 ~~l~~ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~-~~~~tI~lrg~t~~~l~E~er~l~DAl~~ 355 (484)
T cd03342 277 RNMERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKN-PKSCTILIKGPNDHTITQIKDAIRDGLRA 355 (484)
T ss_pred HHHHHHHHHhCCEEecccccCChhhCcccceEEEEEECCeEEEEEECCCC-CcEEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 77888899999999999999999999999876 78999999999999999999999999999
Q ss_pred HHHHHH------------------------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccc
Q psy16434 522 FKGITK------------------------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTY 559 (745)
Q Consensus 522 lk~~~~------------------------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~ 559 (745)
++++++ .+|++|++|||+|+.+++++|+..|.++..++
T Consensus 356 vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~ 435 (484)
T cd03342 356 VKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVG 435 (484)
T ss_pred HHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCce
Confidence 999887 67899999999999999999998988877789
Q ss_pred eeeecCCCcceeecccccccccccchhhHhhhhhhcchhhccccccee
Q psy16434 560 GFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 560 GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kI 607 (745)
|+|+.++ ++.||...||+||+.++..+++.|++.+.|+++||++.+
T Consensus 436 Gid~~~g--~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~ 481 (484)
T cd03342 436 GVDLDTG--EPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIR 481 (484)
T ss_pred eeeCCCC--cccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhh
Confidence 9999999 999999999999999999999999999999999999754
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02339 thermosome_arch thermosome, various subunits, archaeal | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-67 Score=597.57 Aligned_cols=384 Identities=29% Similarity=0.505 Sum_probs=355.5
Q ss_pred ecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhh
Q psy16434 174 IFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQ 253 (745)
Q Consensus 174 ~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~q 253 (745)
+++++.+.++| ++++..|++||..|+++++|||||+||+|||+++.|+++|||||+||||+|+++||+++|+++++++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 82 (519)
T TIGR02339 4 ILKEGTQRTKG-RDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQ 82 (519)
T ss_pred cccCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 45777778888 47999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHH
Q psy16434 254 EEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIV 333 (745)
Q Consensus 254 d~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~ 333 (745)
|+++||| |||+++|+++||+++.+|+++|+||+.|+
T Consensus 83 d~~~GDG--------------------------------------------Ttt~viL~~~ll~~~~~li~~gi~p~~Ii 118 (519)
T TIGR02339 83 DAEVGDG--------------------------------------------TTTAVVLAGELLEKAEDLLEQGIHPTVII 118 (519)
T ss_pred HHHhCCC--------------------------------------------cccHHHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccC-C-ChhhHHHHHHHHHHhhcCC-CCC--CCCccceE
Q psy16434 334 NGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQY-G-NEDFLTDLITKACVSILPD-GSS--SFNVDNVR 408 (745)
Q Consensus 334 ~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~-~-~~~~ls~LivdAv~~v~~~-~~~--~~dl~~I~ 408 (745)
+||+.|++.++++|++++.+. +..+++.|.++|+|+++||+. + +.++|++|+++|+.++++. ..+ .+|+++|+
T Consensus 119 ~g~~~a~~~~~~~L~~~s~~v--~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~ 196 (519)
T TIGR02339 119 EGYRKAAEKALEIIDEIATKI--SPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIK 196 (519)
T ss_pred HHHHHHHHHHHHHHHHhcccc--CcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeE
Confidence 999999999999999998763 334577899999999999999 4 4799999999999999852 123 58889999
Q ss_pred EEEccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC---------------------------
Q psy16434 409 ITKILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK--------------------------- 459 (745)
Q Consensus 409 I~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k--------------------------- 459 (745)
|+++.|++++||++++|++|++++.+ +|++++||+|++++++||+.+++.+
T Consensus 197 i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~ 276 (519)
T TIGR02339 197 IEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVD 276 (519)
T ss_pred EEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999976 5899999999999999999887632
Q ss_pred -------------------------------------------------------CCCCcccccccccEEEEEECCeeEE
Q psy16434 460 -------------------------------------------------------TPPAASELGYADSVAVDELGDTAVV 484 (745)
Q Consensus 460 -------------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvt 484 (745)
+++.+..||+|+++++.++|+++++
T Consensus 277 ~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~ 356 (519)
T TIGR02339 277 KIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMT 356 (519)
T ss_pred HHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEE
Confidence 6677888999999999999999999
Q ss_pred EEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-------------------------------------
Q psy16434 485 VFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------- 527 (745)
Q Consensus 485 i~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------- 527 (745)
+|.|+.. ..++||++||+++.+++|++|+++||+++++++++
T Consensus 357 ~~~~~~~-~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~ 435 (519)
T TIGR02339 357 FVEGCKN-PKAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAF 435 (519)
T ss_pred EEEcCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 9999875 78999999999999999999999999999999886
Q ss_pred -----HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhccc
Q psy16434 528 -----VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQ 602 (745)
Q Consensus 528 -----~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~I 602 (745)
.+|++|++|||+|+.+++++|+..|..+..++|+|+.++ ++.||...||+||+.++..+++.|++.+.+++++
T Consensus 436 a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g--~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 513 (519)
T TIGR02339 436 ADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTG--EIEDMLELGVIEPLRVKEQAIKSATEAATMILRI 513 (519)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCC--CccchhhccceEcHHHHHHHHHHHHHHHHHHHhH
Confidence 679999999999999999999999887777899999999 9999999999999999999999999999999999
Q ss_pred cccee
Q psy16434 603 TKAKI 607 (745)
Q Consensus 603 Dn~kI 607 (745)
|++.+
T Consensus 514 d~ii~ 518 (519)
T TIGR02339 514 DDVIA 518 (519)
T ss_pred hHHhh
Confidence 98653
|
Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs. |
| >KOG0363|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-68 Score=555.04 Aligned_cols=386 Identities=27% Similarity=0.440 Sum_probs=359.7
Q ss_pred CceeecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCC--CCeEEecCHHHHHhhccccChhhHHHH
Q psy16434 170 LPAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHI--DKLFVTNDAATIIRELEIEHPAAKLII 247 (745)
Q Consensus 170 ~~~~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~--g~i~ITnDG~tIlk~l~~~hP~akll~ 247 (745)
.|..+|+.+.++++| +.|+++.+.++.+++|+|||||||+||||||+... |.+.|||||+||||++.+.+|+||+++
T Consensus 2 ~p~~i~~~~~~eErg-e~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv 80 (527)
T KOG0363|consen 2 NPVQIFKDGATEERG-ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLV 80 (527)
T ss_pred Chhhhhcccchhhhh-hhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhhee
Confidence 366789999999999 69999999999999999999999999999998654 779999999999999999999999999
Q ss_pred HHHhhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCC
Q psy16434 248 LGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGL 327 (745)
Q Consensus 248 ~~s~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gi 327 (745)
+.|+-||+++||| ||||++||++||++|.+|+...|
T Consensus 81 ~~S~vQD~EvGDG--------------------------------------------TTSV~vlaaeLlreAeklv~~ki 116 (527)
T KOG0363|consen 81 DISKVQDDEVGDG--------------------------------------------TTSVTVLAAELLREAEKLVNQKI 116 (527)
T ss_pred ccccccccccCCC--------------------------------------------ceehHHHHHHHHHHHHHHHhccc
Confidence 9999999999999 99999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhccccccccccc-CcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCcc
Q psy16434 328 TPSEIVNGYKLALAKTLEILPTLTCFEVKD-VRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVD 405 (745)
Q Consensus 328 hP~~I~~g~~~a~~~~l~~L~~~s~~~~~~-~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~ 405 (745)
||++|+.|||.|...|++.|.+.++....+ ..-+++|+++|+|.|+||++++ .++|++|+++|+.++. |+-|++
T Consensus 117 HPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLk----Gs~nL~ 192 (527)
T KOG0363|consen 117 HPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLK----GSTNLE 192 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc----CCCCcc
Confidence 999999999999999999998877652211 1237889999999999999997 6999999999999985 567899
Q ss_pred ceEEEEccCCCcccceeEeeEEEeecc-cCCceeeeCceEEEeccCCCccccccC-------------------------
Q psy16434 406 NVRITKILGSGLFNSEIVQGMVFKRSV-EGDITKQTKAKIAVYTCPVDIATTETK------------------------- 459 (745)
Q Consensus 406 ~I~I~ki~Ggs~~dS~lv~G~~l~~~~-~~~~~~i~nakIlil~~~Le~~k~e~k------------------------- 459 (745)
.|+|+|+.||+++||++-+|+++++.+ .++|++++||+|||-|.++|..|.+..
T Consensus 193 ~IqIIK~~Gg~l~dSfLDeGFlL~K~igv~qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~ 272 (527)
T KOG0363|consen 193 AIQIIKKLGGKLEDSFLDEGFLLDKKIGVNQPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKE 272 (527)
T ss_pred ceeeehhcCCccccccccccceeccccCCCCcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 468999999999999999998887531
Q ss_pred ----------------------------------------------------------CCCCcccccccccEEEEEECCe
Q psy16434 460 ----------------------------------------------------------TPPAASELGYADSVAVDELGDT 481 (745)
Q Consensus 460 ----------------------------------------------------------~~p~a~~LG~a~~vq~~eiGdt 481 (745)
++|....||.|+.+++..+|++
T Consensus 273 KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiERLalvtGGeI~STFd~p~~~klG~C~~IeeimiGed 352 (527)
T KOG0363|consen 273 KVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIERLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGED 352 (527)
T ss_pred HHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHHHHhhcccceeeeccCCcchhccccchhhHHHhcCcc
Confidence 8899999999999999999999
Q ss_pred eEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------------------------
Q psy16434 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------------------------- 527 (745)
Q Consensus 482 svti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------------------------- 527 (745)
++..|.|+++ +.+|||++||+|+.+++|.+|++|||||++....+
T Consensus 353 ~li~FSGv~~-GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~Ai 431 (527)
T KOG0363|consen 353 KLIKFSGVKL-GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAI 431 (527)
T ss_pred ceeeeccccc-ccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHH
Confidence 9999999998 89999999999999999999999999999988775
Q ss_pred --------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhh
Q psy16434 528 --------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTI 599 (745)
Q Consensus 528 --------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mi 599 (745)
.+|..|++|||+|+.+++++|+..|++|...+|+|+.+| .|.+|...||.|++.||..++..|.+.+.|+
T Consensus 432 eAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G--~i~dm~~~Gi~es~~vK~~vv~sasEaae~i 509 (527)
T KOG0363|consen 432 EAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNG--EIGDMRELGIVESLKVKQAVVSSASEAAEMI 509 (527)
T ss_pred HHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccC--chhhHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 579999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ccccccee
Q psy16434 600 LQQTKAKI 607 (745)
Q Consensus 600 l~IDn~kI 607 (745)
+++|++.-
T Consensus 510 lrvD~Iik 517 (527)
T KOG0363|consen 510 LRVDNIIK 517 (527)
T ss_pred Hhhhhhhh
Confidence 99998754
|
|
| >TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-66 Score=593.57 Aligned_cols=384 Identities=24% Similarity=0.402 Sum_probs=353.4
Q ss_pred ecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhh
Q psy16434 174 IFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQ 253 (745)
Q Consensus 174 ~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~q 253 (745)
+++++.+..+| ++++..|++||.+|+++++|||||+||||||+++.|+++|||||+||+|+|+++||+++|++++|++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~q 82 (531)
T TIGR02347 4 LLNPKAESLRR-DAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQ 82 (531)
T ss_pred cccCCcccccH-HHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHh
Confidence 34566666677 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHH
Q psy16434 254 EEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIV 333 (745)
Q Consensus 254 d~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~ 333 (745)
|+++||| |||+++||++||++|.+||++|+||+.|+
T Consensus 83 d~~~GDG--------------------------------------------TTtvvvLa~~Ll~~a~~li~~gihp~~Ii 118 (531)
T TIGR02347 83 DDITGDG--------------------------------------------TTSTVILIGELLKQAERYILEGIHPRILT 118 (531)
T ss_pred hhhhcCc--------------------------------------------HHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccceEEEEc
Q psy16434 334 NGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRITKI 412 (745)
Q Consensus 334 ~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki 412 (745)
+||+.|++.++++|++++.+.. +..+.+.|.++|+|+++||+++. .++|++|+++|+..++++. ..+|+++|++.++
T Consensus 119 ~g~~~a~~~~~~~L~~~~~~~~-~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~-~~i~~~~I~i~k~ 196 (531)
T TIGR02347 119 EGFEIARGELLEFLDKFKIKTE-DEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDG-EQIDLFMVEIMEM 196 (531)
T ss_pred HHHHHHHHHHHHHHHHhhccCC-CCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhcC-CCCChhHeEEEEe
Confidence 9999999999999999886521 23567889999999999999974 8999999999999998752 2488889999999
Q ss_pred cCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCcccccc--------------------------------
Q psy16434 413 LGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTET-------------------------------- 458 (745)
Q Consensus 413 ~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~-------------------------------- 458 (745)
.|++..||++++|++|++++.+ +|++++||+|++++++|++.+++.
T Consensus 197 ~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~ 276 (531)
T TIGR02347 197 KHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIE 276 (531)
T ss_pred cCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999976 489999999999999999775110
Q ss_pred -------------------C-----------------------------------------CCCCcccccccccEEEEEE
Q psy16434 459 -------------------K-----------------------------------------TPPAASELGYADSVAVDEL 478 (745)
Q Consensus 459 -------------------k-----------------------------------------~~p~a~~LG~a~~vq~~ei 478 (745)
+ +++++++||+|++++++++
T Consensus 277 ~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~i 356 (531)
T TIGR02347 277 LKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSI 356 (531)
T ss_pred hcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEE
Confidence 0 6778889999999999999
Q ss_pred CCeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-------------------------------
Q psy16434 479 GDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------- 527 (745)
Q Consensus 479 Gdtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------- 527 (745)
|++++++|.++.. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 357 g~~~~~~i~~~~~-~~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~ 435 (531)
T TIGR02347 357 GEEKYTFIEEVKN-PKSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAK 435 (531)
T ss_pred CCeEEEEEEcCCC-CCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHH
Confidence 9999999999876 78999999999999999999999999999999887
Q ss_pred -----------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcc
Q psy16434 528 -----------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAA 596 (745)
Q Consensus 528 -----------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a 596 (745)
.+|++|++|||+|+.+++++|+..|.++..++|+|+.++ ++.||...||+||+.++..+++.|++.+
T Consensus 436 ~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gid~~~g--~~~d~~~~gV~Dp~~vk~~al~~A~e~a 513 (531)
T TIGR02347 436 LGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGVDLETG--EPIDPEIKGIWDNYRVKKQLIQSATVIA 513 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeeeccCC--CccchhhccCEEcHHHHHHHHHHHHHHH
Confidence 679999999999999999999999987777799999999 9999999999999999999999999999
Q ss_pred hhhccccccee
Q psy16434 597 NTILQQTKAKI 607 (745)
Q Consensus 597 ~mil~IDn~kI 607 (745)
.|+++||++.+
T Consensus 514 ~~iLrID~ii~ 524 (531)
T TIGR02347 514 SQLLLVDEVMR 524 (531)
T ss_pred HHHHhHHHHHh
Confidence 99999999754
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >PTZ00212 T-complex protein 1 subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-66 Score=593.47 Aligned_cols=387 Identities=29% Similarity=0.433 Sum_probs=357.0
Q ss_pred CceeecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecC-----CCCeEEecCHHHHHhhccccChhhH
Q psy16434 170 LPAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINH-----IDKLFVTNDAATIIRELEIEHPAAK 244 (745)
Q Consensus 170 ~~~~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~-----~g~i~ITnDG~tIlk~l~~~hP~ak 244 (745)
-|..+++++.+..+| ++++..|+.||..|+++++|||||+||+|||+++ .|+++|||||+||||+|+++||+|+
T Consensus 6 ~~~~~~~~~~~~~~~-~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~ak 84 (533)
T PTZ00212 6 VPPQVLKQGAQEEKG-ETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAK 84 (533)
T ss_pred cchHHhcCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHHH
Confidence 355567888888888 6899999999999999999999999999999998 6999999999999999999999999
Q ss_pred HHHHHHhhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhh
Q psy16434 245 LIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLR 324 (745)
Q Consensus 245 ll~~~s~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~ 324 (745)
|++++|++||+++||| |||+|+||++||+++.+|++
T Consensus 85 ll~~~a~~qd~~~GDG--------------------------------------------TTtvvvLa~~Ll~~a~~li~ 120 (533)
T PTZ00212 85 ILVDISKTQDEEVGDG--------------------------------------------TTSVVVLAGELLREAEKLLD 120 (533)
T ss_pred HHHHHHHhhhhhhCCc--------------------------------------------hhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcccccccccccC-cccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCC
Q psy16434 325 MGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDV-RNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSF 402 (745)
Q Consensus 325 ~gihP~~I~~g~~~a~~~~l~~L~~~s~~~~~~~-~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~ 402 (745)
+|+||+.|++||++|++.+++.|++++.+...+. .+++.|.++|+|+++||+.+. .+.|++++++|+..+.+ .+
T Consensus 121 ~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~----~~ 196 (533)
T PTZ00212 121 QKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKG----SG 196 (533)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhc----cC
Confidence 9999999999999999999999999987742211 125789999999999998875 69999999999999864 47
Q ss_pred CccceEEEEccCCCcccceeEeeEEEeecccC-CceeeeCceEEEeccCCCcccccc-------C---------------
Q psy16434 403 NVDNVRITKILGSGLFNSEIVQGMVFKRSVEG-DITKQTKAKIAVYTCPVDIATTET-------K--------------- 459 (745)
Q Consensus 403 dl~~I~I~ki~Ggs~~dS~lv~G~~l~~~~~~-~~~~i~nakIlil~~~Le~~k~e~-------k--------------- 459 (745)
++++|+++++.|++++||++++|+++++++.+ +|++++||||++++++||+.+++. .
T Consensus 197 ~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~~~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~ 276 (533)
T PTZ00212 197 NLDYIQIIKKPGGTLRDSYLEDGFILEKKIGVGQPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEK 276 (533)
T ss_pred CccceEEEEecCcCccccEEEEeEEEecccCCCCCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHH
Confidence 88899999999999999999999999998764 699999999999999999988763 1
Q ss_pred -------------------------------------------------------------CCCCcccccccccEEEEEE
Q psy16434 460 -------------------------------------------------------------TPPAASELGYADSVAVDEL 478 (745)
Q Consensus 460 -------------------------------------------------------------~~p~a~~LG~a~~vq~~ei 478 (745)
+++++..||+|+.+++.++
T Consensus 277 i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~i 356 (533)
T PTZ00212 277 MKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMI 356 (533)
T ss_pred HHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEE
Confidence 6677788999999999999
Q ss_pred CCeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-------------------------------
Q psy16434 479 GDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------- 527 (745)
Q Consensus 479 Gdtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------- 527 (745)
|++++++|.|++. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 357 g~~~~~~~~~~~~-~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~ 435 (533)
T PTZ00212 357 GEDKLIRFSGCAK-GEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKS 435 (533)
T ss_pred CCeEEEEEEccCC-CCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHH
Confidence 9999999999876 78999999999999999999999999999999887
Q ss_pred -----------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcc
Q psy16434 528 -----------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAA 596 (745)
Q Consensus 528 -----------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a 596 (745)
.+|++|++|||+|+.+++++|+..|.++..++|+|+.++ ++.||...|||||+.+|.++++.|++.+
T Consensus 436 ~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g--~i~d~~~~gI~dp~~vk~~al~~A~e~a 513 (533)
T PTZ00212 436 LAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKG--TVGDMKELGITESYKVKLSQLCSATEAA 513 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCC--cccchhhccceecHHHHHHHHHHHHHHH
Confidence 679999999999999999999999988877899999999 9999999999999999999999999999
Q ss_pred hhhcccccceee
Q psy16434 597 NTILQQTKAKIA 608 (745)
Q Consensus 597 ~mil~IDn~kIl 608 (745)
.|++++|++...
T Consensus 514 ~~iL~id~ii~~ 525 (533)
T PTZ00212 514 EMILRVDDIIRC 525 (533)
T ss_pred HHHHhhhHhhhc
Confidence 999999987764
|
|
| >TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-66 Score=591.56 Aligned_cols=392 Identities=54% Similarity=0.908 Sum_probs=358.4
Q ss_pred ecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhh
Q psy16434 174 IFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQ 253 (745)
Q Consensus 174 ~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~q 253 (745)
+++++....+|.++++..|+++|.+|+++|+|||||+||||||+++.|+++|||||+||+|+|+++||+++|++++|++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~sq 84 (531)
T TIGR02346 5 LLKEGYRHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQ 84 (531)
T ss_pred cccCCcccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHHH
Confidence 34555556677667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHH
Q psy16434 254 EEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIV 333 (745)
Q Consensus 254 d~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~ 333 (745)
|+++||| |||+|+||++||+++.+++++|+||..|+
T Consensus 85 d~~~GDG--------------------------------------------TTt~vvLa~~Ll~~~~~li~~gi~p~~Ii 120 (531)
T TIGR02346 85 ENEIGDG--------------------------------------------TNLVIVLAGELLDKAEELIRMGLHPSEII 120 (531)
T ss_pred hhhhCCC--------------------------------------------hhhHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEcc
Q psy16434 334 NGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKIL 413 (745)
Q Consensus 334 ~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~ 413 (745)
+||+.|++.+++.|++++.....+..+.+.|.++++|+++||+.++.++|++|+++|+.+++++..+.+|+++|+|+++.
T Consensus 121 ~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~ 200 (531)
T TIGR02346 121 KGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIM 200 (531)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEec
Confidence 99999999999999998863222334567899999999999999889999999999999998763347899999999999
Q ss_pred CCCcccceeEeeEEEeecccCCceeeeCceEEEeccCCCccccccC----------------------------------
Q psy16434 414 GSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK---------------------------------- 459 (745)
Q Consensus 414 Ggs~~dS~lv~G~~l~~~~~~~~~~i~nakIlil~~~Le~~k~e~k---------------------------------- 459 (745)
|+++++|++++|++|++++.++|+.++||||+++++|+++.+++.+
T Consensus 201 G~s~~ds~li~Gi~~~~~~~~~~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~ 280 (531)
T TIGR02346 201 GGSISNSEVLKGMVFNREAEGSVKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGV 280 (531)
T ss_pred CCChhhceeEeeeEEeccCCCCceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999998888999999999999999999887632
Q ss_pred ------------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEeccc
Q psy16434 460 ------------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAA 491 (745)
Q Consensus 460 ------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l 491 (745)
+++++.+||+|+++++.++|++++++|.+++.
T Consensus 281 ~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~ 360 (531)
T TIGR02346 281 NVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENG 360 (531)
T ss_pred cEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHHHCCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCC
Confidence 56777889999999999999999999999875
Q ss_pred ccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------------HH
Q psy16434 492 ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------------VF 529 (745)
Q Consensus 492 ~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------------~I 529 (745)
.++++||++||+|+.+++|.+|+++||+++++++++ .+
T Consensus 361 ~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~i 440 (531)
T TIGR02346 361 DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEII 440 (531)
T ss_pred CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999887 67
Q ss_pred HHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccceeee
Q psy16434 530 VKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKIAV 609 (745)
Q Consensus 530 Pr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kIll 609 (745)
|++|++|||+|+.+++++|+..|+++..++|+|+.++.+.+.||...||+||+.|+..+++.|++.+.|++++|+.....
T Consensus 441 p~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 520 (531)
T TIGR02346 441 PRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAK 520 (531)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccC
Confidence 89999999999999999999999877778999999982226999999999999999999999999999999999987653
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-66 Score=592.02 Aligned_cols=389 Identities=27% Similarity=0.410 Sum_probs=354.7
Q ss_pred ceeecccc--cccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHH
Q psy16434 171 PAAIFQYY--DKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIIL 248 (745)
Q Consensus 171 ~~~~~~~~--~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~ 248 (745)
|+.+++++ .+..+| ++++..|++||.+|+++++|||||+||||||+++.|+++|||||+||+|+|+++||+|+|+++
T Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~ 84 (526)
T cd03339 6 PFIIVREQEKKKRLKG-LEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVE 84 (526)
T ss_pred CeEEecCCCccccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHH
Confidence 44456665 245566 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCC
Q psy16434 249 GSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLT 328 (745)
Q Consensus 249 ~s~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gih 328 (745)
+|++||+++||| |||+++||++||+++.+|+++|+|
T Consensus 85 ~a~~q~~~~GDG--------------------------------------------Ttt~viLa~~ll~~~~~li~~gi~ 120 (526)
T cd03339 85 LSKSQDDEIGDG--------------------------------------------TTGVVVLAGALLEQAEKLLDRGIH 120 (526)
T ss_pred HHHhhhhhhcCC--------------------------------------------hhhHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccce
Q psy16434 329 PSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNV 407 (745)
Q Consensus 329 P~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I 407 (745)
|+.|++||+.|++.+++.|++++.+...+..+.+.|.++|+|++++|+.+. .+.|++++++|+..+.+.....+|++.|
T Consensus 121 p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I 200 (526)
T cd03339 121 PIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELI 200 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHe
Confidence 999999999999999999999988754444567789999999999998775 6999999999999886533346788999
Q ss_pred EEEEccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC--------------------------
Q psy16434 408 RITKILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK-------------------------- 459 (745)
Q Consensus 408 ~I~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k-------------------------- 459 (745)
+|.++.||+++||++++|++|++++.+ +|+.++||||++++++||+++.+.+
T Consensus 201 ~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v 280 (526)
T cd03339 201 KVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMV 280 (526)
T ss_pred EEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999986 4999999999999999999876532
Q ss_pred --------------------------------------------------------CCCCcccccccccEEEEEECC--e
Q psy16434 460 --------------------------------------------------------TPPAASELGYADSVAVDELGD--T 481 (745)
Q Consensus 460 --------------------------------------------------------~~p~a~~LG~a~~vq~~eiGd--t 481 (745)
+++++..||+|+.++++++|+ +
T Consensus 281 ~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~ 360 (526)
T cd03339 281 EQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKD 360 (526)
T ss_pred HHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHHHHhCCEEecchhhCChhhcccCceEEEEEecCCCc
Confidence 677888899999999999996 6
Q ss_pred eEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------------------------
Q psy16434 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------------------------- 527 (745)
Q Consensus 482 svti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------------------------- 527 (745)
++++|.|+.. ++++||++||+|+.+++|++|+++||+++++++++
T Consensus 361 ~~~~i~g~~~-~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~ 439 (526)
T cd03339 361 KMLVIEGCPN-SKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAM 439 (526)
T ss_pred EEEEEECCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 8899999876 78999999999999999999999999999999887
Q ss_pred --------HHHHHHHhhccchhhHHHHHHHHHhhcC-CccceeeecCCCcceeecccccccccccchhhHhhhhhhcchh
Q psy16434 528 --------VFVKTLAENTGVKSNEVISKLYSAHNEG-KKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANT 598 (745)
Q Consensus 528 --------~IPr~LaeNAGld~~~vlsKL~~~h~~g-~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~m 598 (745)
.+|++|++|||+|+.+++++|+..|.++ ..++|+|+.++ ++.||...||+||+.+|..+++.|++.+.|
T Consensus 440 ~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g--~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~ 517 (526)
T cd03339 440 RAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGR--GTNDMKEQKVFETLISKKQQILLATQVVKM 517 (526)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCC--ccCchhhcCceecHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999988643 55799999999 999999999999999999999999999999
Q ss_pred hccccccee
Q psy16434 599 ILQQTKAKI 607 (745)
Q Consensus 599 il~IDn~kI 607 (745)
+++||++.+
T Consensus 518 iL~iD~ii~ 526 (526)
T cd03339 518 ILKIDDVIV 526 (526)
T ss_pred HhhhceecC
Confidence 999998753
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-66 Score=589.42 Aligned_cols=381 Identities=28% Similarity=0.418 Sum_probs=351.5
Q ss_pred ccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecC--CCCeEEecCHHHHHhhccccChhhHHHHHHHhhh
Q psy16434 176 QYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINH--IDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQ 253 (745)
Q Consensus 176 ~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~--~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~q 253 (745)
+++.+..+| ++++..|+.||..|+++++|||||+||+|||+++ .|+++|||||+||+|+|+++||+++|++++|++|
T Consensus 3 ~~~~~~~~~-~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 81 (517)
T cd03336 3 KDGAQEEKG-ETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQ 81 (517)
T ss_pred CCccccccH-HHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHH
Confidence 445556667 5899999999999999999999999999999998 5999999999999999999999999999999999
Q ss_pred hchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHH
Q psy16434 254 EEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIV 333 (745)
Q Consensus 254 d~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~ 333 (745)
|+++||| |||+|+||++||+++.+|+++|+||+.|+
T Consensus 82 d~~~GDG--------------------------------------------TTtvvvLa~~Ll~~a~~li~~gi~p~~I~ 117 (517)
T cd03336 82 DDEVGDG--------------------------------------------TTSVTVLAAELLREAEKLVAQKIHPQTII 117 (517)
T ss_pred HhHhCCC--------------------------------------------hhHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccccC-cccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccceEEEE
Q psy16434 334 NGYKLALAKTLEILPTLTCFEVKDV-RNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRITK 411 (745)
Q Consensus 334 ~g~~~a~~~~l~~L~~~s~~~~~~~-~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~k 411 (745)
+||+.|++.++++|++++++...+. .+++.|.++|+|+++||+.++ .++|++|+++|+.++.+ .+|+++|+|++
T Consensus 118 ~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~----~~~~~~i~i~k 193 (517)
T cd03336 118 EGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKG----SGNLDAIQIIK 193 (517)
T ss_pred HHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhc----cCCccceeEEE
Confidence 9999999999999999988742211 235789999999999999985 79999999999999963 47888999999
Q ss_pred ccCCCcccceeEeeEEEeecccC-CceeeeCceEEEeccCCCcccccc--------C-----------------------
Q psy16434 412 ILGSGLFNSEIVQGMVFKRSVEG-DITKQTKAKIAVYTCPVDIATTET--------K----------------------- 459 (745)
Q Consensus 412 i~Ggs~~dS~lv~G~~l~~~~~~-~~~~i~nakIlil~~~Le~~k~e~--------k----------------------- 459 (745)
+.|++++||++++|+++++.+.+ +|++++||+|++++++||+++++. .
T Consensus 194 i~G~s~~ds~l~~G~v~~~~~~~~~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~ 273 (517)
T cd03336 194 KLGGSLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKIL 273 (517)
T ss_pred ccCCCccceEEEeeEEEecccCCCCCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998754 599999999999999999887753 1
Q ss_pred ----------------------------------------------------CCCCcccccccccEEEEEECCeeEEEEE
Q psy16434 460 ----------------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFK 487 (745)
Q Consensus 460 ----------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~ 487 (745)
+.+++..||+|+.+++..+|++++++|.
T Consensus 274 ~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~ 353 (517)
T cd03336 274 KHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFS 353 (517)
T ss_pred hcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecccCCCCcccccccceEEEEEECCeEEEEEE
Confidence 6678888999999999999999999999
Q ss_pred ecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------------------------------
Q psy16434 488 LEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------------------------------- 527 (745)
Q Consensus 488 g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------------------------------- 527 (745)
+++. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 354 ~~~~-~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~A 432 (517)
T cd03336 354 GVAA-GEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKA 432 (517)
T ss_pred ccCC-CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHH
Confidence 9986 78999999999999999999999999999999887
Q ss_pred --HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccc
Q psy16434 528 --VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKA 605 (745)
Q Consensus 528 --~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~ 605 (745)
.+|++|++|||+|+.+++++|+..|.++..++|+|+.++ ++.||...||+||+.++.++++.|++.+.|++++|++
T Consensus 433 Le~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g--~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~i 510 (517)
T cd03336 433 LRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKG--TVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDI 510 (517)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCC--CccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHH
Confidence 679999999999999999999999988888899999999 9999999999999999999999999999999999987
Q ss_pred eee
Q psy16434 606 KIA 608 (745)
Q Consensus 606 kIl 608 (745)
.+.
T Consensus 511 i~~ 513 (517)
T cd03336 511 IKC 513 (517)
T ss_pred hhc
Confidence 653
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-66 Score=592.11 Aligned_cols=385 Identities=28% Similarity=0.454 Sum_probs=352.2
Q ss_pred ecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhh
Q psy16434 174 IFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQ 253 (745)
Q Consensus 174 ~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~q 253 (745)
+++++.+..+| ++++..|++||.+|+++++|||||+||||||+++.|+++|||||+||||+|+++||+++|++++|++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q 82 (525)
T TIGR02344 4 VLNQNTKRESG-RKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQ 82 (525)
T ss_pred eccCCCccccH-HHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhh
Confidence 45666666777 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHH
Q psy16434 254 EEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIV 333 (745)
Q Consensus 254 d~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~ 333 (745)
|+++||| |||+|+||++||+++.+|+++|+||+.|+
T Consensus 83 ~~~~GDG--------------------------------------------Ttt~viLa~~Ll~~a~~li~~gi~p~~I~ 118 (525)
T TIGR02344 83 DEEVGDG--------------------------------------------TTSVIILAGEMLSVAEPFLEQNIHPTIII 118 (525)
T ss_pred hhhccCC--------------------------------------------cchhHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCC-ChhhHHHHHHHHHHhhcCCC-CC--CCCcc-ceE
Q psy16434 334 NGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYG-NEDFLTDLITKACVSILPDG-SS--SFNVD-NVR 408 (745)
Q Consensus 334 ~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~-~~~~ls~LivdAv~~v~~~~-~~--~~dl~-~I~ 408 (745)
+||+.|++.++++|++++.+. +..+.+.|.++|+|+++||+.+ +.+.|++|+++|+..++++. .+ .+|++ +|+
T Consensus 119 ~g~~~a~~~~~~~L~~~~~~~--~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~ 196 (525)
T TIGR02344 119 RAYKKALDDALSVLEEISIPV--DVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAK 196 (525)
T ss_pred HHHHHHHHHHHHHHHHhcccc--CCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceE
Confidence 999999999999999988763 3445677999999999999987 47999999999999998753 22 45664 489
Q ss_pred EEEccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC---------------------------
Q psy16434 409 ITKILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK--------------------------- 459 (745)
Q Consensus 409 I~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k--------------------------- 459 (745)
|++++||+++||++++|++|++++.+ ||++++||+|++++++|++.+++.+
T Consensus 197 i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~ 276 (525)
T TIGR02344 197 VEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCE 276 (525)
T ss_pred EEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999865 5999999999999999999865421
Q ss_pred -------------------------------------------------------CCCCcccccc-cccEEEEEECCeeE
Q psy16434 460 -------------------------------------------------------TPPAASELGY-ADSVAVDELGDTAV 483 (745)
Q Consensus 460 -------------------------------------------------------~~p~a~~LG~-a~~vq~~eiGdtsv 483 (745)
++++++.||+ |+.++++++|++++
T Consensus 277 ~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~ 356 (525)
T TIGR02344 277 DIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYF 356 (525)
T ss_pred HHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEE
Confidence 6678888999 99999999999999
Q ss_pred EEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------
Q psy16434 484 VVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------ 527 (745)
Q Consensus 484 ti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------ 527 (745)
++|.|+.. +.++||++||+|+.+++|++|+++||+++++++++
T Consensus 357 ~~~~g~~~-~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~ 435 (525)
T TIGR02344 357 TFFTECKD-PKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRA 435 (525)
T ss_pred EEEEcCCC-CCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 99999876 78999999999999999999999999999999886
Q ss_pred ------HHHHHHHhhccchhhHHHHHHHHHhhcC-CccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhc
Q psy16434 528 ------VFVKTLAENTGVKSNEVISKLYSAHNEG-KKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600 (745)
Q Consensus 528 ------~IPr~LaeNAGld~~~vlsKL~~~h~~g-~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil 600 (745)
.+|++|++|||+|+.+++++|+..|.++ ..++|+|+.++ ++.||...||+||+.++..+++.|++.+.|++
T Consensus 436 ~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g--~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL 513 (525)
T TIGR02344 436 VADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETG--KIVDMKEKGIWEPLAVKLQTYKTAIESACMLL 513 (525)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCC--ccccchhccceecHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999876 56799999999 99999999999999999999999999999999
Q ss_pred ccccceee
Q psy16434 601 QQTKAKIA 608 (745)
Q Consensus 601 ~IDn~kIl 608 (745)
++|++...
T Consensus 514 ~id~ii~~ 521 (525)
T TIGR02344 514 RIDDIVSG 521 (525)
T ss_pred hhhHHhhc
Confidence 99987643
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-66 Score=590.29 Aligned_cols=384 Identities=28% Similarity=0.470 Sum_probs=353.8
Q ss_pred eecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhh
Q psy16434 173 AIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQM 252 (745)
Q Consensus 173 ~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~ 252 (745)
.+++++.+..+|. +++.+|+.+|.+|+++++|||||+||+|||+++.|+++|||||+||||+|+++||+++|++++|++
T Consensus 3 ~~~~~~~~~~~~~-~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~ 81 (522)
T cd03340 3 ILLKEGTDTSQGK-GQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKS 81 (522)
T ss_pred ccccCCcccccHH-HHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHH
Confidence 3567777777884 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHH
Q psy16434 253 QEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEI 332 (745)
Q Consensus 253 qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I 332 (745)
||+++||| |||+|+||++||+++.+|+++|+||+.|
T Consensus 82 q~~~~GDG--------------------------------------------Ttt~viL~~~ll~~~~~li~~gi~p~~I 117 (522)
T cd03340 82 QDAEVGDG--------------------------------------------TTSVVVLAGEFLKEAKPFIEDGVHPQII 117 (522)
T ss_pred hHhHhCCC--------------------------------------------hhHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 99999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccccccC--cccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccceEE
Q psy16434 333 VNGYKLALAKTLEILPTLTCFEVKDV--RNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRI 409 (745)
Q Consensus 333 ~~g~~~a~~~~l~~L~~~s~~~~~~~--~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I~I 409 (745)
++||+.|++.+++.|++++++...+. .+++.|.++|+|+++||+.+. .++|++|+++|+.++++ .+|+++|+|
T Consensus 118 i~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~----~~~~~~I~i 193 (522)
T cd03340 118 IRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDD----DLDLDMIGI 193 (522)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcc----cCChhHheE
Confidence 99999999999999999887642211 135679999999999999975 79999999999999975 367889999
Q ss_pred EEccCCCcccceeEeeEEEeecccC-----CceeeeCceEEEeccCCCccccccC-------------------------
Q psy16434 410 TKILGSGLFNSEIVQGMVFKRSVEG-----DITKQTKAKIAVYTCPVDIATTETK------------------------- 459 (745)
Q Consensus 410 ~ki~Ggs~~dS~lv~G~~l~~~~~~-----~~~~i~nakIlil~~~Le~~k~e~k------------------------- 459 (745)
+++.|+++.||++++|++|++++.+ +|++++||+|++++++||+.+++.+
T Consensus 194 ~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~ 273 (522)
T cd03340 194 KKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDK 273 (522)
T ss_pred eeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999764 4899999999999999998775321
Q ss_pred ---------------------------------------------------------CCCCcccccccccEEEEEECCee
Q psy16434 460 ---------------------------------------------------------TPPAASELGYADSVAVDELGDTA 482 (745)
Q Consensus 460 ---------------------------------------------------------~~p~a~~LG~a~~vq~~eiGdts 482 (745)
+++++..||+|+++++.++|+++
T Consensus 274 v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~ 353 (522)
T cd03340 274 LEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGER 353 (522)
T ss_pred HHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEeeccccCCccccccceEEEEEEECCEE
Confidence 66788899999999999999999
Q ss_pred EEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-----------------------------------
Q psy16434 483 VVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK----------------------------------- 527 (745)
Q Consensus 483 vti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~----------------------------------- 527 (745)
+++|.|+.. ++++||++||+++.+++|.+|+++||+++++++++
T Consensus 354 ~~~~~~~~~-~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~ 432 (522)
T cd03340 354 YNIFTGCPK-AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVIN 432 (522)
T ss_pred EEEEECCCC-CceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 999999976 78999999999999999999999999999999887
Q ss_pred -------HHHHHHHhhccchhhHHHHHHHHHhhcCC-ccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhh
Q psy16434 528 -------VFVKTLAENTGVKSNEVISKLYSAHNEGK-KTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTI 599 (745)
Q Consensus 528 -------~IPr~LaeNAGld~~~vlsKL~~~h~~g~-~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mi 599 (745)
.+|++|++|||+|+.+++++|++.|.++. .++|+|+.++ ++.||...||+||+.||..+++.|++.++|+
T Consensus 433 ~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g--~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~i 510 (522)
T cd03340 433 AFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNE--GIADNFEAFVWEPSLVKINALTAATEAACLI 510 (522)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCC--cccchhhcCceEcHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999998876 6799999999 9999999999999999999999999999999
Q ss_pred cccccceee
Q psy16434 600 LQQTKAKIA 608 (745)
Q Consensus 600 l~IDn~kIl 608 (745)
+++|++.++
T Consensus 511 L~id~ii~~ 519 (522)
T cd03340 511 LSVDETIKN 519 (522)
T ss_pred hhhhhheeC
Confidence 999997754
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-66 Score=590.87 Aligned_cols=384 Identities=29% Similarity=0.444 Sum_probs=353.9
Q ss_pred eecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhh
Q psy16434 173 AIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQM 252 (745)
Q Consensus 173 ~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~ 252 (745)
.+++++.+..+| .+++..|+++|.+|+++++|||||+||+|||+++.| ++|||||+||||+|+++||+++|++++|++
T Consensus 5 ~~~~~~~~~~~~-~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a~~ 82 (522)
T TIGR02345 5 VLLKEGTDTSQG-KGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIAKS 82 (522)
T ss_pred chhcCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHHHH
Confidence 456788777888 489999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHH
Q psy16434 253 QEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEI 332 (745)
Q Consensus 253 qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I 332 (745)
||+++||| |||+|+||++||+++.+|+++|+||+.|
T Consensus 83 q~~~~GDG--------------------------------------------TTt~vvLa~~Ll~~~~~li~~gi~p~~I 118 (522)
T TIGR02345 83 QDSEVGDG--------------------------------------------TTSVVILAGELLKEAKPFIEEGVHPQLI 118 (522)
T ss_pred HHHHhCCC--------------------------------------------chhHHHHHHHHHHhHHHHHHcCCCHHHH
Confidence 99999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccccc-CcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccceEEE
Q psy16434 333 VNGYKLALAKTLEILPTLTCFEVKD-VRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRIT 410 (745)
Q Consensus 333 ~~g~~~a~~~~l~~L~~~s~~~~~~-~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ 410 (745)
++||+.|++.+++.|++++++.... ..+.+.|.++|+|+++||+.+. .++|++|+++|+.+++++ .+|++.|+|+
T Consensus 119 i~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~---~~~~~~I~i~ 195 (522)
T TIGR02345 119 IRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDID---DLDLKLIGVK 195 (522)
T ss_pred HHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhc---cCChhHheEE
Confidence 9999999999999999988774321 1245679999999999999975 799999999999999753 5888999999
Q ss_pred EccCCCcccceeEeeEEEeecccC-----CceeeeCceEEEeccCCCccccccC--------------------------
Q psy16434 411 KILGSGLFNSEIVQGMVFKRSVEG-----DITKQTKAKIAVYTCPVDIATTETK-------------------------- 459 (745)
Q Consensus 411 ki~Ggs~~dS~lv~G~~l~~~~~~-----~~~~i~nakIlil~~~Le~~k~e~k-------------------------- 459 (745)
++.|++++||++++|++|++++.+ +|++++||+|++++++|++.+.+.+
T Consensus 196 ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i 275 (522)
T TIGR02345 196 KVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKL 275 (522)
T ss_pred eecCCCHHhcceecceEEecccCccccccCCceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999764 4899999999999999998865421
Q ss_pred --------------------------------------------------------CCCCcccccccccEEEEEECCeeE
Q psy16434 460 --------------------------------------------------------TPPAASELGYADSVAVDELGDTAV 483 (745)
Q Consensus 460 --------------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsv 483 (745)
+++++.+||+|+.++++++|++++
T Consensus 276 ~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~ 355 (522)
T TIGR02345 276 EKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRVVKACGGSIQSTTSDLEADVLGTCALFEERQIGSERY 355 (522)
T ss_pred HHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCeEEcchhhCChhhccCCceEEEEEECCeEE
Confidence 567778899999999999999999
Q ss_pred EEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------
Q psy16434 484 VVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------ 527 (745)
Q Consensus 484 ti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------ 527 (745)
++|.|++. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 356 ~~~~g~~~-~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~ 434 (522)
T TIGR02345 356 NYFTGCPH-AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEA 434 (522)
T ss_pred EEEEcCCC-CceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 99999876 78999999999999999999999999999999886
Q ss_pred ------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcc
Q psy16434 528 ------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601 (745)
Q Consensus 528 ------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~ 601 (745)
.+|++|++|||+|+.+++++|++.|..+..++|+|+.++ ++.||...||+||+.++..+++.|++.+.|+++
T Consensus 435 ~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~--~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ 512 (522)
T TIGR02345 435 FAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTE--DIGDNFENFVWEPLLVKKNALKAAFEAACTILS 512 (522)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCC--cccchhhcCceEcHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999987777899999999 999999999999999999999999999999999
Q ss_pred cccceee
Q psy16434 602 QTKAKIA 608 (745)
Q Consensus 602 IDn~kIl 608 (745)
+|++.+.
T Consensus 513 id~ii~~ 519 (522)
T TIGR02345 513 IDETIMN 519 (522)
T ss_pred HHHHHhC
Confidence 9987653
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-66 Score=590.40 Aligned_cols=386 Identities=27% Similarity=0.432 Sum_probs=354.3
Q ss_pred eeccc--ccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHH
Q psy16434 173 AIFQY--YDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGS 250 (745)
Q Consensus 173 ~~~~~--~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s 250 (745)
.++++ +.+..+| .+++..|++||..|+++++|||||+||||||+++.|+++|||||+||+|+|+++||+++|++++|
T Consensus 12 ~~~~~~~~~~~~~~-~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~a 90 (532)
T TIGR02343 12 IIIKDQDKKKRLKG-LEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVELS 90 (532)
T ss_pred hhhccccccccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHHH
Confidence 34555 4556777 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHH
Q psy16434 251 QMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPS 330 (745)
Q Consensus 251 ~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~ 330 (745)
++||+++||| |||+++||++||+++.+|+++|+||+
T Consensus 91 ~~qd~~~GDG--------------------------------------------TttvvvLa~~Ll~~a~~li~~gihp~ 126 (532)
T TIGR02343 91 KSQDDEIGDG--------------------------------------------TTGVVVLAGALLEQAEALLDKGIHPI 126 (532)
T ss_pred HHHHHHhcCC--------------------------------------------cccHHHHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccceEE
Q psy16434 331 EIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRI 409 (745)
Q Consensus 331 ~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I~I 409 (745)
.|++||+.|++.++++|++++++...+..+++.|.++|+|++++|+.+. .+.|++++++|+..+.+...+.+|+++|+|
T Consensus 127 ~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i 206 (532)
T TIGR02343 127 KIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKV 206 (532)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeE
Confidence 9999999999999999999988754344467789999999999997775 799999999999998653335689999999
Q ss_pred EEccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC----------------------------
Q psy16434 410 TKILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK---------------------------- 459 (745)
Q Consensus 410 ~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k---------------------------- 459 (745)
+++.||+++||++++|++|++++.+ +|+.++||||++++++||+++++.+
T Consensus 207 ~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~ 286 (532)
T TIGR02343 207 EGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDD 286 (532)
T ss_pred EEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999985 5999999999999999999887642
Q ss_pred ------------------------------------------------------CCCCcccccccccEEEEEECC--eeE
Q psy16434 460 ------------------------------------------------------TPPAASELGYADSVAVDELGD--TAV 483 (745)
Q Consensus 460 ------------------------------------------------------~~p~a~~LG~a~~vq~~eiGd--tsv 483 (745)
+++++..||+|++++++++|+ +++
T Consensus 287 i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~ 366 (532)
T TIGR02343 287 IKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRM 366 (532)
T ss_pred HHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHHHHhCCEEecccccCCHhHCcccceEEEEEecCCcceE
Confidence 677888999999999999998 489
Q ss_pred EEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------
Q psy16434 484 VVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------ 527 (745)
Q Consensus 484 ti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------ 527 (745)
++|.++.. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 367 ~~i~~~~~-~~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~ 445 (532)
T TIGR02343 367 LVIEQCKN-SKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRA 445 (532)
T ss_pred EEEECCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 99999876 78999999999999999999999999999999887
Q ss_pred ------HHHHHHHhhccchhhHHHHHHHHHhhcC-CccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhc
Q psy16434 528 ------VFVKTLAENTGVKSNEVISKLYSAHNEG-KKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600 (745)
Q Consensus 528 ------~IPr~LaeNAGld~~~vlsKL~~~h~~g-~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil 600 (745)
.+|++|++|||+|+.++++++++.|..+ ..++|+|+.++ ++.||...+|+||+.+|..+++.|++.+.|++
T Consensus 446 fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g--~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL 523 (532)
T TIGR02343 446 FADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGD--GTNDMKEQGVFETLIGKKQQIQLATQLVRMIL 523 (532)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCC--ccccchhccCeecHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999988754 55799999999 99999999999999999999999999999999
Q ss_pred ccccce
Q psy16434 601 QQTKAK 606 (745)
Q Consensus 601 ~IDn~k 606 (745)
++|++.
T Consensus 524 ~id~ii 529 (532)
T TIGR02343 524 KIDDVI 529 (532)
T ss_pred hHhhhc
Confidence 999865
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=587.58 Aligned_cols=375 Identities=27% Similarity=0.452 Sum_probs=349.6
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcCccchhh
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVI 265 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GDGt~~~~ 265 (745)
.+++.+|++||..|+++++|||||+||||||+++.|+++|||||+||||+|+++||+++|++++|++||+++|||
T Consensus 8 ~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDG----- 82 (517)
T TIGR02342 8 TDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDG----- 82 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCC-----
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q psy16434 266 IFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLE 345 (745)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~~~l~ 345 (745)
|||+++||++||++|.+|+++|+||+.|++||+.|++.+++
T Consensus 83 ---------------------------------------Ttt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~ 123 (517)
T TIGR02342 83 ---------------------------------------TTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIK 123 (517)
T ss_pred ---------------------------------------cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999
Q ss_pred hcccccccccccCcccccccceeeeccccccCC-ChhhHHHHHHHHHHhhcCC-CCCCCCccceEEEEccCCCcccceeE
Q psy16434 346 ILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYG-NEDFLTDLITKACVSILPD-GSSSFNVDNVRITKILGSGLFNSEIV 423 (745)
Q Consensus 346 ~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~-~~~~ls~LivdAv~~v~~~-~~~~~dl~~I~I~ki~Ggs~~dS~lv 423 (745)
+|++++++. +..+++.|.++|+|++++|+.+ +.++|++|+++|+.+++++ .++.+|+++|+|.++.|+++++|+++
T Consensus 124 ~L~~~~~~~--~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li 201 (517)
T TIGR02342 124 ILDEMSIPV--DLSDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELI 201 (517)
T ss_pred HHHHhcccc--CccCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEE
Confidence 999998773 3346778999999999999886 4799999999999999863 23578999999999999999999999
Q ss_pred eeEEEeecccC---CceeeeCceEEEeccCCCccccccC-----------------------------------------
Q psy16434 424 QGMVFKRSVEG---DITKQTKAKIAVYTCPVDIATTETK----------------------------------------- 459 (745)
Q Consensus 424 ~G~~l~~~~~~---~~~~i~nakIlil~~~Le~~k~e~k----------------------------------------- 459 (745)
+|++|++++.+ +|++++|+||++++++|+..+++.+
T Consensus 202 ~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~ 281 (517)
T TIGR02342 202 EGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQK 281 (517)
T ss_pred eeEEEeccccccCCCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECC
Confidence 99999999876 4999999999999999998876532
Q ss_pred ----------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEeccccc
Q psy16434 460 ----------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAAES 493 (745)
Q Consensus 460 ----------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~~ 493 (745)
+++++.+||+|+.+++.++|+++++++.+++.++
T Consensus 282 ~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~ 361 (517)
T TIGR02342 282 SILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIGCKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAG 361 (517)
T ss_pred CcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHCCEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCC
Confidence 6678889999999999999999999999887645
Q ss_pred ceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------------HHHH
Q psy16434 494 RIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------------VFVK 531 (745)
Q Consensus 494 ~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------------~IPr 531 (745)
+.+||++||+|+.+++|.+|+++||+++++++++ .+|+
T Consensus 362 ~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~ 441 (517)
T TIGR02342 362 KTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPY 441 (517)
T ss_pred ceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999886 6799
Q ss_pred HHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccceee
Q psy16434 532 TLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKIA 608 (745)
Q Consensus 532 ~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kIl 608 (745)
+|++|||+|+.+++++|+..|.++..++|+|+.++ ++.||...||+||+.++..+++.|++.+.|+++||++.+.
T Consensus 442 ~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g--~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~ 516 (517)
T TIGR02342 442 TLAENAGLNPIDVVTELRNRHANGEKYAGISVRKG--GITDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFT 516 (517)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCC--CccchhhccceEcHHHHHHHHHHHHHHHHHHhcccceeec
Confidence 99999999999999999999988878899999999 9999999999999999999999999999999999997653
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-65 Score=588.46 Aligned_cols=377 Identities=30% Similarity=0.479 Sum_probs=344.9
Q ss_pred cccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcCc
Q psy16434 181 HFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDG 260 (745)
Q Consensus 181 ~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GDG 260 (745)
..+| ++++..|++||.+|+++++|||||+||+|||+++.|+++|||||+||+|+|+++||+|+|++++|++||+++|||
T Consensus 3 ~~~~-~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDG 81 (527)
T cd03335 3 RTSG-QDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDG 81 (527)
T ss_pred cccH-HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCC
Confidence 3455 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Q psy16434 261 TNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLAL 340 (745)
Q Consensus 261 t~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~ 340 (745)
|||+|+||++||+++.+|+++|+||+.|++||+.|+
T Consensus 82 --------------------------------------------TTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~ 117 (527)
T cd03335 82 --------------------------------------------TTSVVIIAAELLKRANELVKQKIHPTTIISGYRLAC 117 (527)
T ss_pred --------------------------------------------cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999
Q ss_pred HHHHHhccc-ccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcC-CCCC--CCCccceEEEEccCC
Q psy16434 341 AKTLEILPT-LTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILP-DGSS--SFNVDNVRITKILGS 415 (745)
Q Consensus 341 ~~~l~~L~~-~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~-~~~~--~~dl~~I~I~ki~Gg 415 (745)
+.+++.|++ ++++. +..+++.|.++|+|+++||+++. .++|++|+++|+..++. +..+ .+|+++|+|+++.|+
T Consensus 118 ~~~~~~L~~~~~~~~--~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Gg 195 (527)
T cd03335 118 KEAVKYIKEHLSISV--DNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGK 195 (527)
T ss_pred HHHHHHHHHhhccCC--CccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCc
Confidence 999999996 77763 33367789999999999999976 59999999999999953 2112 488999999999999
Q ss_pred CcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC----------------------------------
Q psy16434 416 GLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK---------------------------------- 459 (745)
Q Consensus 416 s~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k---------------------------------- 459 (745)
++.+|++++|++|++++.+ +|++++||+|++++++|++.+++.+
T Consensus 196 s~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~ 275 (527)
T cd03335 196 SAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGA 275 (527)
T ss_pred ChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999876 5899999999999999998765431
Q ss_pred ------------------------------------------------CC------CCcccccccccEEEEEECCeeEEE
Q psy16434 460 ------------------------------------------------TP------PAASELGYADSVAVDELGDTAVVV 485 (745)
Q Consensus 460 ------------------------------------------------~~------p~a~~LG~a~~vq~~eiGdtsvti 485 (745)
+. +++.+||+|++++++++|++++++
T Consensus 276 ~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~ 355 (527)
T cd03335 276 NVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELIL 355 (527)
T ss_pred CEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEE
Confidence 22 234579999999999999999999
Q ss_pred EEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH--------------------------------------
Q psy16434 486 FKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK-------------------------------------- 527 (745)
Q Consensus 486 ~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~-------------------------------------- 527 (745)
|.|+.. ++++||++||+|+.+++|++|+++||+++++++++
T Consensus 356 i~g~~~-~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a 434 (527)
T cd03335 356 IKGTKK-RSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFA 434 (527)
T ss_pred EEcCCC-CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 999886 89999999999999999999999999999999887
Q ss_pred ----HHHHHHHhhccchhhHHHHHHHHHhhcC--------CccceeeecCCCcceeecccccccccccchhhHhhhhhhc
Q psy16434 528 ----VFVKTLAENTGVKSNEVISKLYSAHNEG--------KKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSA 595 (745)
Q Consensus 528 ----~IPr~LaeNAGld~~~vlsKL~~~h~~g--------~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~ 595 (745)
.+|++|++|||+|+.+++++|++.|..+ ..++|+|+.++ ++.||...||+||+.+|..+++.|+++
T Consensus 435 ~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g--~~~d~~~~gV~dp~~~k~~~i~~A~e~ 512 (527)
T cd03335 435 EALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLING--KVRDNLEAGVLEPTVSKIKSLKFATEA 512 (527)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCC--cccchhhccceecHHHHHHHHHHHHHH
Confidence 6799999999999999999999998876 34689999999 999999999999999999999999999
Q ss_pred chhhccccccee
Q psy16434 596 ANTILQQTKAKI 607 (745)
Q Consensus 596 a~mil~IDn~kI 607 (745)
+.|+++||++.+
T Consensus 513 a~~iLrID~ii~ 524 (527)
T cd03335 513 AITILRIDDLIK 524 (527)
T ss_pred HHHHHhhcceee
Confidence 999999999764
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-65 Score=581.53 Aligned_cols=383 Identities=29% Similarity=0.479 Sum_probs=348.9
Q ss_pred ecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhh
Q psy16434 174 IFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQ 253 (745)
Q Consensus 174 ~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~q 253 (745)
+++++.+..+| ++++..|+.||.+|+++++|||||+||+|||+++.|+++|||||+||||+|+++||+++|++++|++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 82 (480)
T cd03337 4 VLNQNTKRESG-RKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQ 82 (480)
T ss_pred eccCCCccccH-HHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhH
Confidence 45666666677 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHH
Q psy16434 254 EEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIV 333 (745)
Q Consensus 254 d~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~ 333 (745)
|+++||| |||+++|+++||+++.+|+++|+||+.|+
T Consensus 83 ~~~~GDG--------------------------------------------Ttt~vvL~~~Ll~~a~~li~~gi~p~~I~ 118 (480)
T cd03337 83 DEEVGDG--------------------------------------------TTSVIILAGEILAVAEPFLERGIHPTVII 118 (480)
T ss_pred HHHhCCC--------------------------------------------cchhHhhHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCC---CCCcc-ceE
Q psy16434 334 NGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSS---SFNVD-NVR 408 (745)
Q Consensus 334 ~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~---~~dl~-~I~ 408 (745)
+||+.|++.++++|++++.+ .+..+.+.|.++++|+++||+.+. .+.|++|+++|+..++++..+ .+|++ +|+
T Consensus 119 ~g~~~a~~~~~~~L~~~~~~--~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~ 196 (480)
T cd03337 119 KAYRKALEDALKILEEISIP--VDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAK 196 (480)
T ss_pred HHHHHHHHHHHHHHHHhccc--cccCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceE
Confidence 99999999999999998876 334577889999999999999974 799999999999999875322 36665 599
Q ss_pred EEEccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC---------------------------
Q psy16434 409 ITKILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK--------------------------- 459 (745)
Q Consensus 409 I~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k--------------------------- 459 (745)
|++++|++++||++++|++|++++.+ ||++++||+|++++++||+.-.-.+
T Consensus 197 i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~ 276 (480)
T cd03337 197 VEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEYLVITEKGVSDLAQHYLVKAGITALRRVRKTDNN 276 (480)
T ss_pred EEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEecCcceEEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHH
Confidence 99999999999999999999999976 5999999999999999986221111
Q ss_pred --------------CCCCcccccc-cccEEEEEECCeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHH
Q psy16434 460 --------------TPPAASELGY-ADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKG 524 (745)
Q Consensus 460 --------------~~p~a~~LG~-a~~vq~~eiGdtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~ 524 (745)
+++++..||+ |+.++++++|++++++|.++.. .+++||++||+|+.+++|++|+++||++++++
T Consensus 277 rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~-~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~ 355 (480)
T cd03337 277 RIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKD-PKACTILLRGASKDVLNEVERNLQDAMAVARN 355 (480)
T ss_pred HHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 6678888999 6777888889999999999876 78999999999999999999999999999999
Q ss_pred HHH------------------------------------------HHHHHHHhhccchhhHHHHHHHHHhhcC-Ccccee
Q psy16434 525 ITK------------------------------------------VFVKTLAENTGVKSNEVISKLYSAHNEG-KKTYGF 561 (745)
Q Consensus 525 ~~~------------------------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g-~~~~GI 561 (745)
+++ .+|++|++|||+|+.+++++|++.|.++ ..++|+
T Consensus 356 ~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gi 435 (480)
T cd03337 356 IILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGI 435 (480)
T ss_pred HhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECe
Confidence 886 6799999999999999999999999887 567999
Q ss_pred eecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccce
Q psy16434 562 DINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAK 606 (745)
Q Consensus 562 Dl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~k 606 (745)
|+.++ ++.||...+|+||+.+|..+++.|++.+.+++++|++.
T Consensus 436 d~~~g--~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii 478 (480)
T cd03337 436 DGETG--DIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIV 478 (480)
T ss_pred eccCC--CcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhhee
Confidence 99999 99999999999999999999999999999999999864
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-65 Score=584.23 Aligned_cols=378 Identities=28% Similarity=0.474 Sum_probs=350.7
Q ss_pred cccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcCc
Q psy16434 181 HFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDG 260 (745)
Q Consensus 181 ~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GDG 260 (745)
...+ .+++.+|++||..|+++++|||||+||||||+++.|+++|||||+||||+|+++||+++|++++|++||+++|||
T Consensus 3 ~~~~-~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDG 81 (515)
T cd03338 3 KEKP-ADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDG 81 (515)
T ss_pred cccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCC
Confidence 3444 468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Q psy16434 261 TNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLAL 340 (745)
Q Consensus 261 t~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~ 340 (745)
|||+++||++||+++.+++++|+||+.|++||+.|+
T Consensus 82 --------------------------------------------Ttt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~ 117 (515)
T cd03338 82 --------------------------------------------TTSVVVLAGALLSACESLLKKGIHPTVISESFQIAA 117 (515)
T ss_pred --------------------------------------------cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCC-CCCCCccceEEEEccCCCcc
Q psy16434 341 AKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDG-SSSFNVDNVRITKILGSGLF 418 (745)
Q Consensus 341 ~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~-~~~~dl~~I~I~ki~Ggs~~ 418 (745)
+.++++|++++.+. +..+.+.|.++|+|+++||+.+. +++|++|+++|+.+++++. .+.+|+++|+|.++.|++++
T Consensus 118 ~~~~~~L~~~a~~v--~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ 195 (515)
T cd03338 118 KKAVEILDSMSIPV--DLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIE 195 (515)
T ss_pred HHHHHHHHHhccCC--CCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChh
Confidence 99999999998763 33467789999999999999974 7999999999999998753 24689999999999999999
Q ss_pred cceeEeeEEEeecccCC---ceeeeCceEEEeccCCCccccccC------------------------------------
Q psy16434 419 NSEIVQGMVFKRSVEGD---ITKQTKAKIAVYTCPVDIATTETK------------------------------------ 459 (745)
Q Consensus 419 dS~lv~G~~l~~~~~~~---~~~i~nakIlil~~~Le~~k~e~k------------------------------------ 459 (745)
||++++|++|++++.+. |+.++|++|++++++||+.+.+.+
T Consensus 196 ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~l 275 (515)
T cd03338 196 DTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNV 275 (515)
T ss_pred hceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999874 899999999999999999876421
Q ss_pred ---------------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEe
Q psy16434 460 ---------------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKL 488 (745)
Q Consensus 460 ---------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g 488 (745)
+++++..||+|+++++.++|++++++|++
T Consensus 276 vi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~ 355 (515)
T cd03338 276 LLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITG 355 (515)
T ss_pred EEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHHHCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEe
Confidence 66777889999999999999999999999
Q ss_pred cccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-----------------------------------------
Q psy16434 489 EAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK----------------------------------------- 527 (745)
Q Consensus 489 ~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~----------------------------------------- 527 (745)
++.+++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 356 ~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al 435 (515)
T cd03338 356 VKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADAL 435 (515)
T ss_pred cCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 875358999999999999999999999999999999887
Q ss_pred -HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccce
Q psy16434 528 -VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAK 606 (745)
Q Consensus 528 -~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~k 606 (745)
.+|++|++|||+|+.+++++|++.|.+++.++|+|+.++ ++.||...||+||+.++..+++.|++.+.|+++||++.
T Consensus 436 ~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g--~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii 513 (515)
T cd03338 436 EVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKG--AITNILEENVVQPLLVSTSAITLATETVRMILKIDDIV 513 (515)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCC--CccchhhcCceecHHHHHHHHHHHHHHHHHHhccchhh
Confidence 578999999999999999999999987777899999999 99999999999999999999999999999999999976
Q ss_pred e
Q psy16434 607 I 607 (745)
Q Consensus 607 I 607 (745)
+
T Consensus 514 ~ 514 (515)
T cd03338 514 L 514 (515)
T ss_pred c
Confidence 5
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-65 Score=583.78 Aligned_cols=382 Identities=27% Similarity=0.437 Sum_probs=350.6
Q ss_pred cccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCC--CCeEEecCHHHHHhhccccChhhHHHHHHHhh
Q psy16434 175 FQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHI--DKLFVTNDAATIIRELEIEHPAAKLIILGSQM 252 (745)
Q Consensus 175 ~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~--g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~ 252 (745)
++++.+..++ ++++..|++|+.+|+++++|||||+||+|||+++. |+++|||||+||||+|+++||+++|++++|++
T Consensus 3 ~~~~~~~~~~-~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~ 81 (519)
T TIGR02341 3 FKDNAQEERG-ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKV 81 (519)
T ss_pred ccCCCccccH-HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHH
Confidence 4556666777 58999999999999999999999999999999985 99999999999999999999999999999999
Q ss_pred hhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHH
Q psy16434 253 QEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEI 332 (745)
Q Consensus 253 qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I 332 (745)
||+++||| |||+|+||++||++|.+|+++|+||+.|
T Consensus 82 qd~~~GDG--------------------------------------------TTtvvvLa~~Ll~~a~~li~~gihp~~I 117 (519)
T TIGR02341 82 QDDEVGDG--------------------------------------------TTSVTVLAAELLREAEKLVNQKIHPQTI 117 (519)
T ss_pred hHhhhCCc--------------------------------------------hhHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 99999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccccccC-cccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccceEEE
Q psy16434 333 VNGYKLALAKTLEILPTLTCFEVKDV-RNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRIT 410 (745)
Q Consensus 333 ~~g~~~a~~~~l~~L~~~s~~~~~~~-~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ 410 (745)
++||+.|++.++++|++++++...+. .+++.|.++|+|++++|+.+. .+.|++++++|+..+.+ ..|+++|+|.
T Consensus 118 i~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~----~~~~~~i~i~ 193 (519)
T TIGR02341 118 ISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKG----SGNLDAIQII 193 (519)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhcc----CCChhheEEE
Confidence 99999999999999999988743221 135789999999999998875 69999999999999853 2467789999
Q ss_pred EccCCCcccceeEeeEEEeecccC-CceeeeCceEEEeccCCCcccccc-C-----------------------------
Q psy16434 411 KILGSGLFNSEIVQGMVFKRSVEG-DITKQTKAKIAVYTCPVDIATTET-K----------------------------- 459 (745)
Q Consensus 411 ki~Ggs~~dS~lv~G~~l~~~~~~-~~~~i~nakIlil~~~Le~~k~e~-k----------------------------- 459 (745)
++.|+++++|++++|+++++.+.+ +|++++||+|++++++||+.+++. +
T Consensus 194 k~~G~s~~~s~l~~G~v~~~~~~~~~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I 273 (519)
T TIGR02341 194 KKLGGSLNDSYLDEGFLLEKKIGVNQPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKI 273 (519)
T ss_pred EccCCCcccceEEeeEEEeccCCCCCceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999864 689999999999999999877542 1
Q ss_pred -----------------------------------------------------CCCCcccccccccEEEEEECCeeEEEE
Q psy16434 460 -----------------------------------------------------TPPAASELGYADSVAVDELGDTAVVVF 486 (745)
Q Consensus 460 -----------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~ 486 (745)
+++++.+||+|+.+++..+|++++++|
T Consensus 274 ~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~ 353 (519)
T TIGR02341 274 LKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKF 353 (519)
T ss_pred HHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecccccCCccccccCceEEEEEECCEEEEEE
Confidence 667888899999999999999999999
Q ss_pred EecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH---------------------------------------
Q psy16434 487 KLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK--------------------------------------- 527 (745)
Q Consensus 487 ~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~--------------------------------------- 527 (745)
.|++. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 354 ~~~~~-~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ 432 (519)
T TIGR02341 354 SGVKL-GEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFAR 432 (519)
T ss_pred EcCCC-CCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Confidence 99986 78999999999999999999999999999999986
Q ss_pred ---HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhccccc
Q psy16434 528 ---VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTK 604 (745)
Q Consensus 528 ---~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn 604 (745)
.+|++|++|||+|+.+++++|++.|.++..++|+|+.++ ++.||...|||||+.+|..+++.|++.+.|++++|+
T Consensus 433 Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g--~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ 510 (519)
T TIGR02341 433 ALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEG--EIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDN 510 (519)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCC--cccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHH
Confidence 679999999999999999999999988777899999999 999999999999999999999999999999999998
Q ss_pred ceee
Q psy16434 605 AKIA 608 (745)
Q Consensus 605 ~kIl 608 (745)
+.+.
T Consensus 511 ii~~ 514 (519)
T TIGR02341 511 IIKA 514 (519)
T ss_pred HHhc
Confidence 7653
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03343 cpn60 cpn60 chaperonin family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-65 Score=583.47 Aligned_cols=384 Identities=32% Similarity=0.527 Sum_probs=355.7
Q ss_pred ecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhh
Q psy16434 174 IFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQ 253 (745)
Q Consensus 174 ~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~q 253 (745)
+++++.+.++| ++++..|++||.+|+++++|||||+||+|||+++.|+++|||||+||+|+|+++||+|+|++++|++|
T Consensus 3 ~~~~~~~~~~~-~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 81 (517)
T cd03343 3 ILKEGTQRTSG-RDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQ 81 (517)
T ss_pred ccCCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHH
Confidence 35677777778 57999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHH
Q psy16434 254 EEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIV 333 (745)
Q Consensus 254 d~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~ 333 (745)
|+++||| |||+++||++||+++.+++++|+||..|+
T Consensus 82 ~~~~GDG--------------------------------------------Ttt~viLa~~ll~~~~~li~~gi~p~~I~ 117 (517)
T cd03343 82 DEEVGDG--------------------------------------------TTTAVVLAGELLEKAEDLLDQNIHPTVII 117 (517)
T ss_pred HHHhCCC--------------------------------------------hhHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 9999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCC--CCCCccceEEE
Q psy16434 334 NGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGS--SSFNVDNVRIT 410 (745)
Q Consensus 334 ~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~--~~~dl~~I~I~ 410 (745)
+||++|++.+++.|++++.+. +..+++.|.++|+++++||+.+. .++|++|+++|+.+++++.. ..+|+++|+|.
T Consensus 118 ~g~~~a~~~~~~~L~~~s~~v--~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~ 195 (517)
T cd03343 118 EGYRLAAEKALELLDEIAIKV--DPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIE 195 (517)
T ss_pred HHHHHHHHHHHHHHHHhhccc--CCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEE
Confidence 999999999999999998773 33467889999999999999985 69999999999999976522 25888999999
Q ss_pred EccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC-----------------------------
Q psy16434 411 KILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK----------------------------- 459 (745)
Q Consensus 411 ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k----------------------------- 459 (745)
++.|++++||++++|++|++++.+ +|+.++||+|++++++||+.+++.+
T Consensus 196 k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i 275 (517)
T cd03343 196 KKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKI 275 (517)
T ss_pred eecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999976 4889999999999999999887632
Q ss_pred -----------------------------------------------------CCCCcccccccccEEEEEECCeeEEEE
Q psy16434 460 -----------------------------------------------------TPPAASELGYADSVAVDELGDTAVVVF 486 (745)
Q Consensus 460 -----------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~ 486 (745)
+++++..||+|+++++.++|++++++|
T Consensus 276 ~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~ 355 (517)
T cd03343 276 ADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFV 355 (517)
T ss_pred HhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHHHhCCEEecchhhCChhhCCccceEEEEEECCeEEEEE
Confidence 667788899999999999999999999
Q ss_pred EecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH---------------------------------------
Q psy16434 487 KLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK--------------------------------------- 527 (745)
Q Consensus 487 ~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~--------------------------------------- 527 (745)
.|+.. ..++||++||+++.+++|++|+++||+++++++++
T Consensus 356 ~~~~~-~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~ 434 (517)
T cd03343 356 EGCKN-PKAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFAD 434 (517)
T ss_pred EcCCC-CceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 99876 78999999999999999999999999999999887
Q ss_pred ---HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhccccc
Q psy16434 528 ---VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTK 604 (745)
Q Consensus 528 ---~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn 604 (745)
.+|++|++|||+|+.+++++|++.|..++.++|+|+.++ ++.|+...||+||+.+|.++++.|++.+.+++++|+
T Consensus 435 aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g--~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ 512 (517)
T cd03343 435 ALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTG--EVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDD 512 (517)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCC--CccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhH
Confidence 679999999999999999999999877777899999999 999999999999999999999999999999999998
Q ss_pred cee
Q psy16434 605 AKI 607 (745)
Q Consensus 605 ~kI 607 (745)
+.+
T Consensus 513 ii~ 515 (517)
T cd03343 513 VIA 515 (517)
T ss_pred hhh
Confidence 764
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. |
| >cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-64 Score=569.13 Aligned_cols=382 Identities=57% Similarity=0.944 Sum_probs=348.8
Q ss_pred ccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcCcc
Q psy16434 182 FSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 182 ~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GDGt 261 (745)
.++.++++..|+++|.+|+++++|||||+||+|||+++.|+++|||||+||+|+|+++||+++|+++++++||+++|||
T Consensus 3 ~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDG- 81 (472)
T cd03341 3 YSGLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDG- 81 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCC-
Confidence 3445789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+++|+++||+++.+++++|+||+.|++||+.|++
T Consensus 82 -------------------------------------------TTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~ 118 (472)
T cd03341 82 -------------------------------------------TNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALK 118 (472)
T ss_pred -------------------------------------------hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccce
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSE 421 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~ 421 (745)
.+++.|++++.+...+..+.+.|.++++|+++||..++.++|++|+++|+.+++++..+.+++++|+|+++.|++++||+
T Consensus 119 ~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~ 198 (472)
T cd03341 119 KALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDSK 198 (472)
T ss_pred HHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccce
Confidence 99999999886533333466779999999999999888899999999999999876446789999999999999999999
Q ss_pred eEeeEEEeecccCCceeeeCceEEEeccCCCcccccc---C---------------------------------------
Q psy16434 422 IVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTET---K--------------------------------------- 459 (745)
Q Consensus 422 lv~G~~l~~~~~~~~~~i~nakIlil~~~Le~~k~e~---k--------------------------------------- 459 (745)
+++|++|++.+.+++++++||+|++++++||+...-. +
T Consensus 199 lv~Giv~~~~~~~~~~~~~n~~Ili~~~~Le~g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~ 278 (472)
T cd03341 199 VVRGMVFKREPEGSVKRVKKAKVAVFSCPFDIGVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLP 278 (472)
T ss_pred EEeeEEEccccCCCceeccCCcEEEEeccccCCCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEec
Confidence 9999999998888889999999999999999822210 0
Q ss_pred --CCCCcccccccccEEEEEECCeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------
Q psy16434 460 --TPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------- 527 (745)
Q Consensus 460 --~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------- 527 (745)
+++++..||+|+++++.++|++++++|.++...++++||++||+++.+++|++|+++||+++++++++
T Consensus 279 ~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~ 358 (472)
T cd03341 279 RLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGA 358 (472)
T ss_pred ccccCCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCH
Confidence 55677889999999999999999999998864367899999999999999999999999999999886
Q ss_pred --------------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccc
Q psy16434 528 --------------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAE 575 (745)
Q Consensus 528 --------------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g 575 (745)
.+|++|++|||+|+.+++++|+..|.++..++|+|+.+++.++.||..
T Consensus 359 ~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~ 438 (472)
T cd03341 359 TEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKE 438 (472)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhh
Confidence 679999999999999999999998877777899999876336789999
Q ss_pred ccccccccchhhHhhhhhhcchhhccccccee
Q psy16434 576 AGILDLYLTKMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 576 ~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kI 607 (745)
.||+||+.|+..+++.|++.+.|++++|+...
T Consensus 439 ~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 470 (472)
T cd03341 439 AGIFDHLATKKWAIKLATEAAVTVLRVDQIIM 470 (472)
T ss_pred ccceecHHHHHHHHHHHHHHHHHHhhhcceee
Confidence 99999999999999999999999999998764
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-64 Score=577.60 Aligned_cols=379 Identities=30% Similarity=0.478 Sum_probs=345.0
Q ss_pred ccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcC
Q psy16434 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGD 259 (745)
Q Consensus 180 ~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GD 259 (745)
+..+| ++++..|++||..|+++++|||||+||+|||+++.|+++|||||+||+|+|+++||+|+|++++|++||+++||
T Consensus 6 ~~~~~-~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GD 84 (536)
T TIGR02340 6 ERTSG-QDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGD 84 (536)
T ss_pred ceecH-HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCC
Confidence 34556 58999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q psy16434 260 GTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLA 339 (745)
Q Consensus 260 Gt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a 339 (745)
| |||+++||++||+++.+|+++|+||+.|++||+.|
T Consensus 85 G--------------------------------------------TTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a 120 (536)
T TIGR02340 85 G--------------------------------------------TTSVVIIAAELLKRADELIKRKVHPTSIISGYRLA 120 (536)
T ss_pred C--------------------------------------------hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999
Q ss_pred HHHHHHhcccc-cccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCC-CCC--CCCccceEEEEccC
Q psy16434 340 LAKTLEILPTL-TCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPD-GSS--SFNVDNVRITKILG 414 (745)
Q Consensus 340 ~~~~l~~L~~~-s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~-~~~--~~dl~~I~I~ki~G 414 (745)
++.++++|++. +.+. +..+.+.|.++|+|+++||+.+. .++|++|+++|+..++.. ..+ .+|+++|+++++.|
T Consensus 121 ~~~~~~~L~~~~~~~~--~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G 198 (536)
T TIGR02340 121 CKEAVKYIKENLSVSV--DELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHG 198 (536)
T ss_pred HHHHHHHHHHhhccCC--CcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecC
Confidence 99999999874 6653 23356789999999999999975 799999999999999632 122 47889999999999
Q ss_pred CCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC---------------------------------
Q psy16434 415 SGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK--------------------------------- 459 (745)
Q Consensus 415 gs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k--------------------------------- 459 (745)
+++.+|++++|++|++++.+ +|++++||+|++++++|++.+++.+
T Consensus 199 ~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g 278 (536)
T TIGR02340 199 GSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAG 278 (536)
T ss_pred CCccccEEEEEEEEecccCCCCCcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999975 5899999999999999999885531
Q ss_pred -------------------------------------------------C------CCCcccccccccEEEEEECCeeEE
Q psy16434 460 -------------------------------------------------T------PPAASELGYADSVAVDELGDTAVV 484 (745)
Q Consensus 460 -------------------------------------------------~------~p~a~~LG~a~~vq~~eiGdtsvt 484 (745)
. ++++..||+|++++++++|+++++
T Consensus 279 ~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~ 358 (536)
T TIGR02340 279 ANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECI 358 (536)
T ss_pred CCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEE
Confidence 1 234456999999999999999999
Q ss_pred EEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-------------------------------------
Q psy16434 485 VFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------- 527 (745)
Q Consensus 485 i~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------- 527 (745)
+|.|+.. +.++||++||+|+.+++|++|+++||+++++++++
T Consensus 359 ~i~~~~~-~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~f 437 (536)
T TIGR02340 359 LIKGTKG-RKSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEF 437 (536)
T ss_pred EEEcCCC-CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHH
Confidence 9998875 78999999999999999999999999999999887
Q ss_pred -----HHHHHHHhhccchhhHHHHHHHHHhhcC--------CccceeeecCCCcceeecccccccccccchhhHhhhhhh
Q psy16434 528 -----VFVKTLAENTGVKSNEVISKLYSAHNEG--------KKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATS 594 (745)
Q Consensus 528 -----~IPr~LaeNAGld~~~vlsKL~~~h~~g--------~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e 594 (745)
.+|++|++|||+|+.+++++|++.|..+ ..++|+|+.++ ++.||...||+||+.+|..+++.|++
T Consensus 438 a~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g--~~~d~~~~gI~Dp~~~k~~~l~~A~e 515 (536)
T TIGR02340 438 AEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNG--KIRDNKEAGVLEPAVSKVKSLKFATE 515 (536)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCC--ccccchhccceecHHHHHHHHHHHHH
Confidence 6789999999999999999999988765 34689999999 99999999999999999999999999
Q ss_pred cchhhcccccceee
Q psy16434 595 AANTILQQTKAKIA 608 (745)
Q Consensus 595 ~a~mil~IDn~kIl 608 (745)
.+.|+++||++.+.
T Consensus 516 ~a~~iL~ID~ii~~ 529 (536)
T TIGR02340 516 AAITILRIDDLIKL 529 (536)
T ss_pred HHHHHHhhhhhhhc
Confidence 99999999998754
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >KOG0358|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-65 Score=533.11 Aligned_cols=374 Identities=27% Similarity=0.477 Sum_probs=350.8
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcCccchhh
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVI 265 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GDGt~~~~ 265 (745)
++.|.+||++++++++.++|||||+||||||++..|+++|||||+||||.|++-||+++|++++|..||.++|||
T Consensus 25 ~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDG----- 99 (534)
T KOG0358|consen 25 EQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDG----- 99 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCC-----
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q psy16434 266 IFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLE 345 (745)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~~~l~ 345 (745)
|||||+|||.||..+.+|+++||||+.|...|+.|.+.+++
T Consensus 100 ---------------------------------------TTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~ 140 (534)
T KOG0358|consen 100 ---------------------------------------TTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVD 140 (534)
T ss_pred ---------------------------------------ceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999
Q ss_pred hcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcC-CCCCCCCccceEEEEccCCCcccceeE
Q psy16434 346 ILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILP-DGSSSFNVDNVRITKILGSGLFNSEIV 423 (745)
Q Consensus 346 ~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~-~~~~~~dl~~I~I~ki~Ggs~~dS~lv 423 (745)
+|++++.+ .+..+++.|.+-|.|+|+||+.|+ ...|+.+.++|+.++.. ....+.|+.+|+|.|..||.++|++++
T Consensus 141 il~~m~~~--velsdre~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i 218 (534)
T KOG0358|consen 141 ILDEMSVP--VELSDRESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELI 218 (534)
T ss_pred HHHhcCCC--cccCcHHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhh
Confidence 99999988 456789999999999999999985 78999999999999864 344668899999999999999999999
Q ss_pred eeEEEeecccC--CceeeeCceEEEeccCCCccccccC------------------------------------------
Q psy16434 424 QGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK------------------------------------------ 459 (745)
Q Consensus 424 ~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k------------------------------------------ 459 (745)
+|++|++.... -|++++++||.++.|.|+.+|+.+.
T Consensus 219 ~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKS 298 (534)
T KOG0358|consen 219 KGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKS 298 (534)
T ss_pred cceEEeeecccCCCcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHH
Confidence 99999988754 4999999999999999999998642
Q ss_pred ---------------------------------------------CCCCcccccccccEEEE-EECCeeEEEEEeccccc
Q psy16434 460 ---------------------------------------------TPPAASELGYADSVAVD-ELGDTAVVVFKLEAAES 493 (745)
Q Consensus 460 ---------------------------------------------~~p~a~~LG~a~~vq~~-eiGdtsvti~~g~~l~~ 493 (745)
++.++..||+|+.+++. .-|+.+++-+.|....+
T Consensus 299 ILRdavsDLAlHfL~klkimvikdieRediefick~l~c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g 378 (534)
T KOG0358|consen 299 ILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLGCKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAG 378 (534)
T ss_pred HHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcCCeecchhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCC
Confidence 78899999999999887 44667999999998768
Q ss_pred ceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------------HHHH
Q psy16434 494 RIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------------VFVK 531 (745)
Q Consensus 494 ~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------------~IPr 531 (745)
.+++|++||.+..+++|.+|++|||||++|...+ .||.
T Consensus 379 ~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~ 458 (534)
T KOG0358|consen 379 RTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPY 458 (534)
T ss_pred CceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccH
Confidence 8999999999999999999999999999999886 5799
Q ss_pred HHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhccccccee
Q psy16434 532 TLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 532 ~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kI 607 (745)
+||+|||+++..+++.|++.|++|...+||++..| .+.++....+.+|.+|...++..|.|...|+++|||+..
T Consensus 459 tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg--~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~ 532 (534)
T KOG0358|consen 459 TLAENAGLNPIATVTELRNRHAQGEKNAGINVRKG--GITNILEENVVQPLLVSISAITLATETVRSILKIDDIVN 532 (534)
T ss_pred hHHhhCCCChhhHHHHHHHHHhcCCcccceeeecc--cchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhcc
Confidence 99999999999999999999999999999999999 999999999999999999999999999999999998643
|
|
| >cd00309 chaperonin_type_I_II chaperonin families, type I and type II | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-62 Score=553.33 Aligned_cols=371 Identities=36% Similarity=0.552 Sum_probs=345.5
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcCccchhh
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVI 265 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GDGt~~~~ 265 (745)
++++..|++||..|+++++|||||+||+|||+++.|+++|||||+||+|+|+++||+++|+++++++||+++|||
T Consensus 7 ~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDG----- 81 (464)
T cd00309 7 EEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDG----- 81 (464)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCc-----
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q psy16434 266 IFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLE 345 (745)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~~~l~ 345 (745)
|||+++|+++||+++.+++++|+||+.|++||+.|++.+++
T Consensus 82 ---------------------------------------Ttt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~ 122 (464)
T cd00309 82 ---------------------------------------TTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALE 122 (464)
T ss_pred ---------------------------------------hhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999
Q ss_pred hcccccccccccCcccccccceeeeccccccCC-ChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccceeEe
Q psy16434 346 ILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYG-NEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQ 424 (745)
Q Consensus 346 ~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~-~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~lv~ 424 (745)
.|++++++. +..+.+.|+++|+|+++||+.+ ++++|++++++|+.+++++.. .++.+.|+|+++.||++.||++++
T Consensus 123 ~L~~~~~~~--~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~-~~~~~~I~i~k~~gg~~~ds~li~ 199 (464)
T cd00309 123 ILKEIAVPI--DVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENG-DVDLGVIRVEKKKGGSLEDSELVV 199 (464)
T ss_pred HHHHhcCcc--CCCCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccC-ccccceEEEEecCCCCcccceeee
Confidence 999998773 3457788999999999999987 589999999999999987533 677889999999999999999999
Q ss_pred eEEEeecccCC--ceeeeCceEEEeccCCCc----ccccc----------C---------------------------CC
Q psy16434 425 GMVFKRSVEGD--ITKQTKAKIAVYTCPVDI----ATTET----------K---------------------------TP 461 (745)
Q Consensus 425 G~~l~~~~~~~--~~~i~nakIlil~~~Le~----~k~e~----------k---------------------------~~ 461 (745)
|++|++++.++ |+.++||+|++++++||+ .+.-. + ++
T Consensus 200 Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~~ 279 (464)
T cd00309 200 GMVFDKGYLSPYMPKRLENAKILLLDCKLEYVVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLED 279 (464)
T ss_pred eEEEecCCCCCCCceeecCceEEEEecCcceEEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEeccccc
Confidence 99999999875 799999999999999987 22100 0 66
Q ss_pred CCcccccccccEEEEEECCeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH--------------
Q psy16434 462 PAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK-------------- 527 (745)
Q Consensus 462 p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~-------------- 527 (745)
+++..||+|+.+++.++|++++++|.++.. ++++||++||+|+.+++|++|+++||+++++++++
T Consensus 280 ~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~-~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ 358 (464)
T cd00309 280 LTPEDLGTAGLVEETKIGDEKYTFIEGCKG-GKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIE 358 (464)
T ss_pred CCcccCccccEEEEEEEcCeeEEEEEecCC-CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHH
Confidence 778899999999999999999999998875 78899999999999999999999999999999887
Q ss_pred ----------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccc
Q psy16434 528 ----------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGIL 579 (745)
Q Consensus 528 ----------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~ 579 (745)
.+|++|++|||+|+.+++++|++.|..+..++|+|..++ ++.||...||+
T Consensus 359 ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~--~~~d~~~~gI~ 436 (464)
T cd00309 359 LSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETG--EIVDMKEAGII 436 (464)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCC--cEeehhhccCe
Confidence 679999999999999999999999987777889999999 99999999999
Q ss_pred ccccchhhHhhhhhhcchhhcccccce
Q psy16434 580 DLYLTKMWALKYATSAANTILQQTKAK 606 (745)
Q Consensus 580 Ds~lVkG~vL~~A~e~a~mil~IDn~k 606 (745)
||+.++..+++.|++.+.+++++|.+.
T Consensus 437 dp~~vk~~~l~~A~e~a~~iL~id~ii 463 (464)
T cd00309 437 DPLKVKRQALKSATEAASLILTIDDII 463 (464)
T ss_pred ecHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 999999999999999999999999764
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. |
| >KOG0362|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=516.12 Aligned_cols=389 Identities=56% Similarity=0.863 Sum_probs=360.8
Q ss_pred ecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhh
Q psy16434 174 IFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQ 253 (745)
Q Consensus 174 ~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~q 253 (745)
+|++|.++.+|.+++..+|++||..|+++++|+|||+||+|||+|+.|++.+|||.+||+++|+++||+||||++++++|
T Consensus 13 ~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPaakllv~a~~~q 92 (537)
T KOG0362|consen 13 MLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPAAKLLVEATQMQ 92 (537)
T ss_pred HHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHH
Q psy16434 254 EEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIV 333 (745)
Q Consensus 254 d~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~ 333 (745)
+++.||| |++||+|+++||++|.+||..|++|.+|+
T Consensus 93 ~~~iGDg--------------------------------------------tnfvvvla~~LLe~Ae~li~~Gl~~~ei~ 128 (537)
T KOG0362|consen 93 EEEIGDG--------------------------------------------TNFVVVLAGALLEQAEELIRMGLTPAEIS 128 (537)
T ss_pred HHhhCCC--------------------------------------------ceEeehhHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEcc
Q psy16434 334 NGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKIL 413 (745)
Q Consensus 334 ~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~ 413 (745)
+||+.|...+++.|+++.+....+..|.+ .+++++++||.+++++++++|+++|+..+.|. +.|+.++|+|.|+.
T Consensus 129 ~gy~~A~~~~~e~l~~lv~~~~~d~~d~~---~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~--~~FnvdnIrVcKi~ 203 (537)
T KOG0362|consen 129 EGYETATKEALEILPELVVQSIGDLEDKE---WALRSVIMSKQYGNEDFLTKLVAKACVSILPL--MSFNVDNIRVCKIL 203 (537)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcccccChH---HHHHHHHHHhhcchHHHHHHHHHHHHHhhccc--ccccccceEEEEEe
Confidence 99999999999999998766444455554 88999999999999999999999999999987 45999999999999
Q ss_pred CCCcccceeEeeEEEeecccCCceeeeCceEEEeccCCCccccccC----------------------------------
Q psy16434 414 GSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK---------------------------------- 459 (745)
Q Consensus 414 Ggs~~dS~lv~G~~l~~~~~~~~~~i~nakIlil~~~Le~~k~e~k---------------------------------- 459 (745)
|+++++|.++.||+|++...+.+++-+.++|++++||+|...+++|
T Consensus 204 Gg~l~~S~Vv~GmVfkr~~eG~v~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gv 283 (537)
T KOG0362|consen 204 GGGLEDSCVVCGMVFKRDPEGEVKSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGV 283 (537)
T ss_pred cCCcccceeeEEEEeccccCCcccccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999998865
Q ss_pred ------------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEeccc
Q psy16434 460 ------------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAA 491 (745)
Q Consensus 460 ------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l 491 (745)
..|....||+|+++...++||+.+|+|..+.-
T Consensus 284 kViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcrtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~ 363 (537)
T KOG0362|consen 284 KVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCRTVGATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWEST 363 (537)
T ss_pred eEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHHHcCCccchhccCCCCccccccceeeeeecCCceEEEEeeccC
Confidence 66888999999999999999999999988754
Q ss_pred ccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------------HH
Q psy16434 492 ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------------VF 529 (745)
Q Consensus 492 ~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------------~I 529 (745)
..++.|+++||+++.++|+.||+++|+++..|...+ .+
T Consensus 364 ~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~ 443 (537)
T KOG0362|consen 364 GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVL 443 (537)
T ss_pred CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccc
Confidence 468899999999999999999999999999998776 46
Q ss_pred HHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccceeee
Q psy16434 530 VKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKIAV 609 (745)
Q Consensus 530 Pr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kIll 609 (745)
|++|++|||++.+++++++...|. +...+|+|+.... .+.|+...++||.+..|.+.++.|++++.+++++|++.++.
T Consensus 444 PktlaEnagl~~~evia~ly~~h~-~g~~~g~di~~e~-~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak 521 (537)
T KOG0362|consen 444 PKTLAENAGLAVTEVIAKLYAVHQ-GGKNLGMDIEAEG-GTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAK 521 (537)
T ss_pred cHhHHHhcCCcHHHHHHHHHHhhc-CCCcceeeeeccc-cccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEec
Confidence 999999999999999999999987 4456888987762 48899999999999999999999999999999999998876
Q ss_pred eccC
Q psy16434 610 YTCP 613 (745)
Q Consensus 610 l~~~ 613 (745)
=.+.
T Consensus 522 ~agg 525 (537)
T KOG0362|consen 522 KAGG 525 (537)
T ss_pred ccCC
Confidence 5543
|
|
| >COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=534.01 Aligned_cols=375 Identities=33% Similarity=0.456 Sum_probs=341.1
Q ss_pred cccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhc
Q psy16434 179 DKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMG 258 (745)
Q Consensus 179 ~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~G 258 (745)
.+..++ ++++..|+.|+..|+++|+|||||+||||||+++.|+++|||||+||+|+|+++||.|||++++|++||+++|
T Consensus 4 ~~~~~~-~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~G 82 (524)
T COG0459 4 KERKFG-EDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAG 82 (524)
T ss_pred cccccc-HHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhc
Confidence 345566 5899999999999999999999999999999999779999999999999999999999999999999999999
Q ss_pred CccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy16434 259 DGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKL 338 (745)
Q Consensus 259 DGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~ 338 (745)
|| |||++|||++||+++.+++++|+||+.|++||++
T Consensus 83 DG--------------------------------------------TTtavVLa~all~ea~~li~~gi~P~~I~~G~~~ 118 (524)
T COG0459 83 DG--------------------------------------------TTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRL 118 (524)
T ss_pred Cc--------------------------------------------hHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99 9999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcc
Q psy16434 339 ALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLF 418 (745)
Q Consensus 339 a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~ 418 (745)
|.+.+++.|++++.+...+ +.+. +++.+++++|..+++++|++|+++|+.+++.... |++.|++.+..|++..
T Consensus 119 A~~~~~e~l~~~a~~v~~~--~~~~--~~~~t~v~sk~~~~~~~i~~lv~~Av~~v~~~~~---d~~~i~~vk~~gg~~~ 191 (524)
T COG0459 119 AVEKAVEELKEIAKPVSDS--EEEL--KIAITSVASKSANSDEEIGELVVEAVEKVGKEQS---DLDGIIIVKESGGSET 191 (524)
T ss_pred HHHHHHHHHHHhhccCCcc--hhhh--hhhhheeeeeeccChHHHHHHHHHHHHHhccccc---ccCCeEEEEecCCCcc
Confidence 9999999999998874322 2222 8999999999997779999999999999987532 7889999999999999
Q ss_pred cceeEeeEEEeecccC---Cc-eeeeCceEEEeccCCCccccccC-----------------------------------
Q psy16434 419 NSEIVQGMVFKRSVEG---DI-TKQTKAKIAVYTCPVDIATTETK----------------------------------- 459 (745)
Q Consensus 419 dS~lv~G~~l~~~~~~---~~-~~i~nakIlil~~~Le~~k~e~k----------------------------------- 459 (745)
++++++||+|++++.+ +| +.++||+||+++++|++.+++.+
T Consensus 192 e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~ 271 (524)
T COG0459 192 ELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGA 271 (524)
T ss_pred ceEEEeeEEecCCccCCCCCCccccccceEEEEccccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999997654 48 88999999999999999998753
Q ss_pred --------------------------------------------------CCCCcccccc--cccEEEEEECCeeEEEEE
Q psy16434 460 --------------------------------------------------TPPAASELGY--ADSVAVDELGDTAVVVFK 487 (745)
Q Consensus 460 --------------------------------------------------~~p~a~~LG~--a~~vq~~eiGdtsvti~~ 487 (745)
++++...+|. |+.+++..+|++.+++|.
T Consensus 272 ~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~ 351 (524)
T COG0459 272 NVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQ 351 (524)
T ss_pred CEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHccCceEEeecccCceeecCccccceEEEeeccchhhhhhh
Confidence 5667788999 999999999999999999
Q ss_pred eccc-ccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH---------------------------------------
Q psy16434 488 LEAA-ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK--------------------------------------- 527 (745)
Q Consensus 488 g~~l-~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~--------------------------------------- 527 (745)
+++. .+++++|++||+++.+++|.+|+++|||++++++++
T Consensus 352 ~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a 431 (524)
T COG0459 352 ERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFA 431 (524)
T ss_pred hhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHH
Confidence 9874 367899999999999999999999999999999987
Q ss_pred ----HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcce-eecccccccccccchhhHhhhhhhcchhhccc
Q psy16434 528 ----VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSV-IDAAEAGILDLYLTKMWALKYATSAANTILQQ 602 (745)
Q Consensus 528 ----~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI-~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~I 602 (745)
.+|++|++|||+|+.+++++|++.|. ...+|+|+.++ ++ .||...||+||..|+..+++.|++.+.|++++
T Consensus 432 ~Ale~ip~~La~NaG~d~~~v~~~L~~~~~--~~~~G~d~~~~--~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~ 507 (524)
T COG0459 432 RALEAPPRQLAENAGLDPIEVLSKLRSAHA--TTNYGIDAFTG--EYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTI 507 (524)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHhccc--CCccceeccCC--ccccchHhccCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999775 34589999998 77 77999999999999999999999999999999
Q ss_pred ccceeee
Q psy16434 603 TKAKIAV 609 (745)
Q Consensus 603 Dn~kIll 609 (745)
|++....
T Consensus 508 d~iI~~~ 514 (524)
T COG0459 508 DDIIAAK 514 (524)
T ss_pred HHhhccC
Confidence 9876543
|
|
| >PTZ00114 Heat shock protein 60; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-56 Score=512.79 Aligned_cols=358 Identities=24% Similarity=0.309 Sum_probs=316.1
Q ss_pred cccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccCh----hhHHHHHHHhhhhch
Q psy16434 181 HFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHP----AAKLIILGSQMQEEE 256 (745)
Q Consensus 181 ~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP----~akll~~~s~~qd~~ 256 (745)
..++ ++++..|+++|..|+++++|||||+||+|||+++.|+++|||||+||+|+|+++|| +|+|++++|++||++
T Consensus 17 ~~~~-~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~e 95 (555)
T PTZ00114 17 IRFG-DEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDK 95 (555)
T ss_pred hhhH-HHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccc
Confidence 3445 68999999999999999999999999999999999999999999999999999999 899999999999888
Q ss_pred hcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy16434 257 MGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGY 336 (745)
Q Consensus 257 ~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~ 336 (745)
+||| |||+|+||++||+++.+|+++|+||..|++||
T Consensus 96 vGDG--------------------------------------------TTtvvvLa~~LL~~a~~li~~GihP~~I~~G~ 131 (555)
T PTZ00114 96 AGDG--------------------------------------------TTTATILARAIFREGCKAVAAGLNPMDLKRGI 131 (555)
T ss_pred cCCc--------------------------------------------ccHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 8888 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCC
Q psy16434 337 KLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSG 416 (745)
Q Consensus 337 ~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs 416 (745)
+.|.+.+++.|++++.+. .+.+.|.++|+|++++ +++|++|+++|+.+++++ + .|.+..|++
T Consensus 132 ~~A~~~~~~~L~~~s~~v----~~~~~l~~va~ts~~~-----~~~l~~li~eAv~~vg~~--g-------~I~~~~g~~ 193 (555)
T PTZ00114 132 DLAVKVVLESLKEQSRPV----KTKEDILNVATISANG-----DVEIGSLIADAMDKVGKD--G-------TITVEDGKT 193 (555)
T ss_pred HHHHHHHHHHHHHhccCC----CCHHHHHHHHHHHcCC-----hHHHHHHHHHHHHHhCcC--C-------cEEEcCCCC
Confidence 999999999999998763 2566799999999865 678999999999999754 2 267788999
Q ss_pred cccc-eeEeeEEEeecccCC---------ceeeeCceEEEeccCCCcccccc-----------C----------------
Q psy16434 417 LFNS-EIVQGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIATTET-----------K---------------- 459 (745)
Q Consensus 417 ~~dS-~lv~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k~e~-----------k---------------- 459 (745)
+.|| ++++|++|++++.++ ++.++||+||+++++|+..+.-. +
T Consensus 194 ~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~i~~~~~~llI~~~~i~~~al~~L 273 (555)
T PTZ00114 194 LEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTL 273 (555)
T ss_pred ccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHH
Confidence 9998 899999999998753 78899999999999998332100 0
Q ss_pred ------------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEecc-
Q psy16434 460 ------------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEA- 490 (745)
Q Consensus 460 ------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~- 490 (745)
+++++++||+|+++++.+ .+++++.|+.
T Consensus 274 ~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~---~~~~~~~~~~~ 350 (555)
T PTZ00114 274 IINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK---DETVILTGGGD 350 (555)
T ss_pred HHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe---ceEEEEeCCCc
Confidence 234556799999999988 5667776543
Q ss_pred ---------------------------------cccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------
Q psy16434 491 ---------------------------------AESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------- 527 (745)
Q Consensus 491 ---------------------------------l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------- 527 (745)
++++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 351 ~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~gvVpGGGa~ 430 (555)
T PTZ00114 351 KAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEGIVPGGGVA 430 (555)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcHH
Confidence 1367899999999999999999999999999999775
Q ss_pred ---------------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecc
Q psy16434 528 ---------------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAA 574 (745)
Q Consensus 528 ---------------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~ 574 (745)
.+|++|++|||+|+.+++++|++ .+..++|+|+.++ ++.||.
T Consensus 431 e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~---~~~~~~G~d~~~g--~~~d~~ 505 (555)
T PTZ00114 431 LLRASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILE---KKDPSFGYDAQTG--EYVNMF 505 (555)
T ss_pred HHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh---cCCCCEeEeCCCC--cEeeHH
Confidence 57899999999999999999976 3456799999999 999999
Q ss_pred cccccccccchhhHhhhhhhcchhhcccccceeee
Q psy16434 575 EAGILDLYLTKMWALKYATSAANTILQQTKAKIAV 609 (745)
Q Consensus 575 g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kIll 609 (745)
..||+||..|+..+++.|++.+.+++++|++.+..
T Consensus 506 ~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~ 540 (555)
T PTZ00114 506 EAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDL 540 (555)
T ss_pred hCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhC
Confidence 99999999999999999999999999999987763
|
|
| >PRK00013 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-56 Score=507.83 Aligned_cols=353 Identities=21% Similarity=0.311 Sum_probs=314.8
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccCh----hhHHHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHP----AAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP----~akll~~~s~~qd~~~GDGt 261 (745)
++++..|++|+..++++++|||||+||+|||+++.|+++|||||+||||+|+++|| .++|++++|++||+++|||
T Consensus 9 ~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e~GDG- 87 (542)
T PRK00013 9 EDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDG- 87 (542)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcccCCc-
Confidence 58999999999999999999999999999999999999999999999999999999 6999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+++||++||+++.+++++|+||..|++||+.|++
T Consensus 88 -------------------------------------------TTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~ 124 (542)
T PRK00013 88 -------------------------------------------TTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVE 124 (542)
T ss_pred -------------------------------------------cchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccce
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSE 421 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~ 421 (745)
.+++.|++++.+. .+.+.|.++|.++++ +++.|++++++|+..++++ + .|+|.+..| +..+++
T Consensus 125 ~~~~~L~~~a~~~----~~~~~l~~va~ts~~-----~~~~ls~lv~~Av~~v~~~--g-----~i~i~~~~~-~~~~~~ 187 (542)
T PRK00013 125 AAVEELKKISKPV----EDKEEIAQVATISAN-----GDEEIGKLIAEAMEKVGKE--G-----VITVEESKG-FETELE 187 (542)
T ss_pred HHHHHHHHhccCC----CCHHHHHHHHHhccc-----chHHHHHHHHHHHHHhCcC--C-----cEEEEEcCC-CCceEE
Confidence 9999999998763 256779999988875 4789999999999999754 2 288888777 788999
Q ss_pred eEeeEEEeecccCC---------ceeeeCceEEEeccCCCcccccc---------C------------------------
Q psy16434 422 IVQGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIATTET---------K------------------------ 459 (745)
Q Consensus 422 lv~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k~e~---------k------------------------ 459 (745)
+++|++|++++.++ ++.++||+|+++|+.++....-. +
T Consensus 188 ~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~ 267 (542)
T PRK00013 188 VVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLR 267 (542)
T ss_pred EEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCc
Confidence 99999999998764 78899999999998765332100 0
Q ss_pred -----------------------------------------CCCCcccccccccEEEEEECCeeEEEEEecccc------
Q psy16434 460 -----------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAAE------ 492 (745)
Q Consensus 460 -----------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~------ 492 (745)
+++++++||+|+.+++.+ +++++|.++...
T Consensus 268 g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~r 344 (542)
T PRK00013 268 GTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK---DNTTIVDGAGDKEAIKAR 344 (542)
T ss_pred ccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec---CEEEEEeCCCCHHHHHHH
Confidence 235667799999998765 888999876541
Q ss_pred ----------------------------cceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-----------------
Q psy16434 493 ----------------------------SRIATLVIRGATENYMDDIERAVDDGVNTFKGITK----------------- 527 (745)
Q Consensus 493 ----------------------------~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~----------------- 527 (745)
++.+||++||+|+.+++|.+|+++||+++++++++
T Consensus 345 i~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g~VpGGGa~e~~~s~~ 424 (542)
T PRK00013 345 VAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVALLRAAPA 424 (542)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHH
Confidence 12788999999999999999999999999998876
Q ss_pred -----------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccc
Q psy16434 528 -----------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLT 584 (745)
Q Consensus 528 -----------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lV 584 (745)
.+|++|++|||+|+.+++++|++.| ..++|+|+.++ ++.|+...||+||+.|
T Consensus 425 L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~---~~~~G~d~~~g--~~~d~~~~gI~Dp~~v 499 (542)
T PRK00013 425 LEALKGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGK---GKGYGYNAATG--EYVDMIEAGIIDPTKV 499 (542)
T ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCEeEeCCCC--ceeehhhccCeecHHH
Confidence 5789999999999999999999877 35789999999 9999999999999999
Q ss_pred hhhHhhhhhhcchhhccccccee
Q psy16434 585 KMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 585 kG~vL~~A~e~a~mil~IDn~kI 607 (745)
+..+++.|++.+.+++++|++..
T Consensus 500 k~~al~~A~~~a~~iL~id~iI~ 522 (542)
T PRK00013 500 TRSALQNAASVAGLLLTTEAVVA 522 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998754
|
|
| >PRK12849 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-56 Score=507.69 Aligned_cols=352 Identities=21% Similarity=0.290 Sum_probs=312.0
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccCh----hhHHHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHP----AAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP----~akll~~~s~~qd~~~GDGt 261 (745)
++++..|++++.+++++++|||||+||+|||+++.|+++|||||+||+|+|+++|| +|+|++++|++||+++|||
T Consensus 9 ~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~GDG- 87 (542)
T PRK12849 9 EEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVAGDG- 87 (542)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCccCCC-
Confidence 68999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+|+||++||+++.+|+++|+||..|++||+.|++
T Consensus 88 -------------------------------------------TTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~ 124 (542)
T PRK12849 88 -------------------------------------------TTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVE 124 (542)
T ss_pred -------------------------------------------ccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCccc-c
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN-S 420 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~d-S 420 (745)
.+++.|++++.+. .+.+.|.++|+|+++ ++++|++|+++|+..++++ +. +.+. .|++.+| +
T Consensus 125 ~~~~~L~~~s~~~----~~~~~l~~va~ts~~-----~~~~l~~lv~~Av~~v~~~--g~-----i~i~--~g~~~~d~~ 186 (542)
T PRK12849 125 AVVEELKALARPV----SGSEEIAQVATISAN-----GDEEIGELIAEAMEKVGKD--GV-----ITVE--ESKTLETEL 186 (542)
T ss_pred HHHHHHHHhccCC----CCHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHhccC--Cc-----EeEE--eCCCcceeE
Confidence 9999999998763 356679999998875 4789999999999999754 33 3333 6888876 7
Q ss_pred eeEeeEEEeecccCC---------ceeeeCceEEEeccCCCcccccc---------C-----------------------
Q psy16434 421 EIVQGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIATTET---------K----------------------- 459 (745)
Q Consensus 421 ~lv~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k~e~---------k----------------------- 459 (745)
++++|++|++++.++ ++.++||+|+++++.++....-. +
T Consensus 187 ~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~ 266 (542)
T PRK12849 187 EVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKL 266 (542)
T ss_pred EEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhh
Confidence 999999999998754 78899999999999865332100 0
Q ss_pred ------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEeccc------
Q psy16434 460 ------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAA------ 491 (745)
Q Consensus 460 ------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l------ 491 (745)
+++++++||+|+.+++.+ ++++++.|+..
T Consensus 267 ~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~ 343 (542)
T PRK12849 267 RGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK---DNTTIVDGAGDKEAIEA 343 (542)
T ss_pred hccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee---eeEEEEeCCCCHHHHHH
Confidence 334457799999998755 88898987653
Q ss_pred ----------------------------ccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------
Q psy16434 492 ----------------------------ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------- 527 (745)
Q Consensus 492 ----------------------------~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------- 527 (745)
.++.+||++||+|+.+++|.+|+++||+++++++++
T Consensus 344 r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g~VpGGGa~e~~ls~ 423 (542)
T PRK12849 344 RVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVALLRAAK 423 (542)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcCeecCCCHHHHHHHH
Confidence 135899999999999999999999999999998776
Q ss_pred ------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccccccc
Q psy16434 528 ------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYL 583 (745)
Q Consensus 528 ------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~l 583 (745)
.+|++|++|||+|+.+++++|++.| .++|+|+.++ ++.||...||+||..
T Consensus 424 ~L~~~~~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~----~~~G~d~~~g--~~~d~~~~GV~Dp~~ 497 (542)
T PRK12849 424 ALDELAGLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE----DGFGFNAATG--EYGDLIAAGIIDPVK 497 (542)
T ss_pred HHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC----CCcceeCCCC--ccccHHhccCccCHH
Confidence 5789999999999999999998865 3689999999 999999999999999
Q ss_pred chhhHhhhhhhcchhhcccccceee
Q psy16434 584 TKMWALKYATSAANTILQQTKAKIA 608 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~kIl 608 (745)
++..+++.|++.+.|++++|++.+.
T Consensus 498 vk~~al~~A~e~A~~iL~id~iI~~ 522 (542)
T PRK12849 498 VTRSALQNAASVAGLLLTTEALVAD 522 (542)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 9999999999999999999987753
|
|
| >PRK12852 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-55 Score=501.67 Aligned_cols=352 Identities=20% Similarity=0.298 Sum_probs=309.0
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhcccc----ChhhHHHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE----HPAAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~----hP~akll~~~s~~qd~~~GDGt 261 (745)
+++++.|++|+..|+++++|||||+||+|||+++.|+++|||||+||+|+|++. ||+|+|++++|++||+++|||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e~GDG- 88 (545)
T PRK12852 10 GDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDLAGDG- 88 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCceecCC-
Confidence 589999999999999999999999999999999999999999999999999994 888999999999998888888
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+++||++||+++.+|+++|+||..|++||++|++
T Consensus 89 -------------------------------------------TTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~ 125 (545)
T PRK12852 89 -------------------------------------------TTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVA 125 (545)
T ss_pred -------------------------------------------cchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCc-ccc
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGL-FNS 420 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~-~dS 420 (745)
.+++.|++++.+. .+.++|.++|++++++ ++.|++|+++|+.+++++ +. |.+. .|++. .++
T Consensus 126 ~~l~~L~~~s~~v----~~~~~l~~va~~s~~~-----~~~l~~li~eA~~~vg~~--g~-----i~v~--~g~~~~~~~ 187 (545)
T PRK12852 126 AVVKDIEKRAKPV----ASSAEIAQVGTISANG-----DAAIGKMIAQAMQKVGNE--GV-----ITVE--ENKSLETEV 187 (545)
T ss_pred HHHHHHHHhcccC----CCHHHHHHHHhhhcCC-----hHHHHHHHHHHHHHhccC--Cc-----eeee--cCCCcceEE
Confidence 9999999998763 2345689999888865 588999999999999864 33 3333 27775 789
Q ss_pred eeEeeEEEeecccCC---------ceeeeCceEEEeccCCCcccccc---------C-----------------------
Q psy16434 421 EIVQGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIATTET---------K----------------------- 459 (745)
Q Consensus 421 ~lv~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k~e~---------k----------------------- 459 (745)
++++|+.|++++.++ +..++||+|+++++.++..+.-. +
T Consensus 188 ~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~ 267 (545)
T PRK12852 188 DIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRL 267 (545)
T ss_pred EEEEeEEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcc
Confidence 999999999999763 67899999999998755322100 0
Q ss_pred ------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEeccc------
Q psy16434 460 ------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAA------ 491 (745)
Q Consensus 460 ------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l------ 491 (745)
+++++++||+|+.+++.+ ++++++.|+..
T Consensus 268 ~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~---~~~~~i~~~~~~~~i~~ 344 (545)
T PRK12852 268 RGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK---ENTTIVNGAGKKADIEA 344 (545)
T ss_pred cccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc---cEEEEEeCCCCHHHHHH
Confidence 445566799999998888 68888887642
Q ss_pred ----------------------------ccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------
Q psy16434 492 ----------------------------ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------- 527 (745)
Q Consensus 492 ----------------------------~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------- 527 (745)
+++.+||++||+|+.+++|.+|+++||+++++++++
T Consensus 345 ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g~VpGGGa~e~~~s~ 424 (545)
T PRK12852 345 RVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKK 424 (545)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHH
Confidence 136789999999999999999999999999999876
Q ss_pred ------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccccccc
Q psy16434 528 ------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYL 583 (745)
Q Consensus 528 ------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~l 583 (745)
.+|++|++|||+|+.+++++|++.| ..++|||+.++ ++.|+...||+||+.
T Consensus 425 ~L~~~~~~~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~---~~~~G~d~~~g--~~~d~~~~GI~Dp~~ 499 (545)
T PRK12852 425 AVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENK---SETFGFDAQTE--EYVDMVAKGIIDPAK 499 (545)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCeeEeCcCC--CcccHHhCcCCcChH
Confidence 5789999999999999999998876 35789999999 999999999999999
Q ss_pred chhhHhhhhhhcchhhccccccee
Q psy16434 584 TKMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~kI 607 (745)
++..+++.|++.+.|++++|++..
T Consensus 500 vk~~al~~A~e~a~~iL~id~iI~ 523 (545)
T PRK12852 500 VVRTALQDAASVAGLLVTTEAMVA 523 (545)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhh
Confidence 999999999999999999998654
|
|
| >PRK12850 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-55 Score=501.11 Aligned_cols=353 Identities=20% Similarity=0.297 Sum_probs=309.7
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChh----hHHHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPA----AKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~----akll~~~s~~qd~~~GDGt 261 (745)
++++..|++||.+|+++++|||||+||+|||+++.|+++|||||+||+|+|+++||+ |+|++++|++||+++|||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e~GDG- 88 (544)
T PRK12850 10 TDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDLAGDG- 88 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcchhcCC-
Confidence 589999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+++||++||+++.+|+++|+||..|++||+.|++
T Consensus 89 -------------------------------------------TTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~ 125 (544)
T PRK12850 89 -------------------------------------------TTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVA 125 (544)
T ss_pred -------------------------------------------cchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccce
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSE 421 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~ 421 (745)
.++++|++++.+. .+.+.|.++|++++++ ++.|++++++|+.+++++ +.++++.+ +..| .+++
T Consensus 126 ~~~~~L~~~s~~v----~~~~~l~~va~~s~~~-----~~~l~~lv~eAv~~vg~~--g~i~v~~~---~~~g---~~~~ 188 (544)
T PRK12850 126 AVVDELKKIAKKV----TSSKEIAQVATISANG-----DESIGEMIAEAMDKVGKE--GVITVEEA---KTLG---TELD 188 (544)
T ss_pred HHHHHHHHhccCC----CCHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhccc--CceeeEEc---cccC---cceE
Confidence 9999999998763 2567799999888765 689999999999999864 44444332 2223 6889
Q ss_pred eEeeEEEeecccCC---------ceeeeCceEEEeccCCCcccccc---------C------------------------
Q psy16434 422 IVQGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIATTET---------K------------------------ 459 (745)
Q Consensus 422 lv~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k~e~---------k------------------------ 459 (745)
+++|++|++++.++ ++.++||+|+++|+.++..+.-. +
T Consensus 189 ~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~ 268 (544)
T PRK12850 189 VVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLR 268 (544)
T ss_pred EEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCc
Confidence 99999999998763 78899999999998765321100 0
Q ss_pred -----------------------------------------CCCCcccccccccEEEEEECCeeEEEEEeccc-------
Q psy16434 460 -----------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAA------- 491 (745)
Q Consensus 460 -----------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l------- 491 (745)
+++++++||+|+.+++.+ +++++|.|+..
T Consensus 269 ~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~r 345 (544)
T PRK12850 269 GGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK---ENTTIIDGAGDKKNIEAR 345 (544)
T ss_pred ccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe---eeEEEEeCCCCHHHHHHH
Confidence 334556799999998877 78888887643
Q ss_pred ---------------------------ccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-----------------
Q psy16434 492 ---------------------------ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK----------------- 527 (745)
Q Consensus 492 ---------------------------~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~----------------- 527 (745)
+++.+||++||+|+.+++|.+|+++||+++++++++
T Consensus 346 i~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g~VpGGGa~e~~~s~~ 425 (544)
T PRK12850 346 VKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSA 425 (544)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHH
Confidence 134899999999999999999999999999999876
Q ss_pred -----------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccc
Q psy16434 528 -----------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLT 584 (745)
Q Consensus 528 -----------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lV 584 (745)
.+|++|++|||+|+.+++++|++.| .++|+|+.++ ++.|+...+|+||..|
T Consensus 426 L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~----~~~G~d~~~g--~~~d~~~~gI~Dp~~v 499 (544)
T PRK12850 426 LRGLKGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP----GNFGFNAQTG--EYGDMVEAGIIDPAKV 499 (544)
T ss_pred HHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC----CCcceeCCCC--cccchhhccCcccHHH
Confidence 5789999999999999999998865 3689999999 9999999999999999
Q ss_pred hhhHhhhhhhcchhhcccccceee
Q psy16434 585 KMWALKYATSAANTILQQTKAKIA 608 (745)
Q Consensus 585 kG~vL~~A~e~a~mil~IDn~kIl 608 (745)
+..+++.|++.+.+++++|++.+.
T Consensus 500 k~~al~~A~~~a~~iL~id~iI~~ 523 (544)
T PRK12850 500 TRTALQDAASIAALLITTEAMVAE 523 (544)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhcc
Confidence 999999999999999999987653
|
|
| >cd03344 GroEL GroEL_like type I chaperonin | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-55 Score=497.20 Aligned_cols=350 Identities=23% Similarity=0.330 Sum_probs=311.6
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccCh----hhHHHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHP----AAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP----~akll~~~s~~qd~~~GDGt 261 (745)
.+++..|+++|..|+++++|||||+||+|||+++.|+++|||||+||+|+|+++|| +++|++++|++||+++|||
T Consensus 7 ~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~GDG- 85 (520)
T cd03344 7 EEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDG- 85 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhccccCCC-
Confidence 58999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+++||++||+++.+++++|+||..|++||+.|.+
T Consensus 86 -------------------------------------------TTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~ 122 (520)
T cd03344 86 -------------------------------------------TTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVE 122 (520)
T ss_pred -------------------------------------------cchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCccc-c
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN-S 420 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~d-S 420 (745)
.++++|++++.+. ++.+.|.++|+|++++ +++|++++++|+..++++ +. |.+ ..|++..| +
T Consensus 123 ~~~~~L~~~~~~i----~~~~~l~~va~ts~~~-----~~~l~~lv~~A~~~v~~~--~~-----i~v--~~g~~~~d~~ 184 (520)
T cd03344 123 AVVEELKKLSKPV----KTKEEIAQVATISANG-----DEEIGELIAEAMEKVGKD--GV-----ITV--EEGKTLETEL 184 (520)
T ss_pred HHHHHHHHhccCC----CCHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHhccC--Cc-----EEE--EeCCCcceeE
Confidence 9999999998773 2677899999999985 689999999999999754 22 444 57899988 6
Q ss_pred eeEeeEEEeecccCC-----c----eeeeCceEEEeccCCCcccccc---------C-----------------------
Q psy16434 421 EIVQGMVFKRSVEGD-----I----TKQTKAKIAVYTCPVDIATTET---------K----------------------- 459 (745)
Q Consensus 421 ~lv~G~~l~~~~~~~-----~----~~i~nakIlil~~~Le~~k~e~---------k----------------------- 459 (745)
++++|++|++++.++ | ++++||+|++++++|+....-. +
T Consensus 185 ~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i 264 (520)
T cd03344 185 EVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKL 264 (520)
T ss_pred EEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCC
Confidence 999999999998754 3 6799999999999975332200 0
Q ss_pred ------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEecccc-----
Q psy16434 460 ------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAAE----- 492 (745)
Q Consensus 460 ------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~----- 492 (745)
+++++++||+|+.+++.+ ++++++.++...
T Consensus 265 ~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ 341 (520)
T cd03344 265 RGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK---DDTTIIGGAGDKAAIKA 341 (520)
T ss_pred ccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee---ceEEEEeCCCCHHHHHH
Confidence 234456799999998877 788888876431
Q ss_pred -----------------------------cceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------
Q psy16434 493 -----------------------------SRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------- 527 (745)
Q Consensus 493 -----------------------------~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------- 527 (745)
++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 342 ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g~VpGGGa~e~~~s~ 421 (520)
T cd03344 342 RIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRASP 421 (520)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcHHHHHHHH
Confidence 35899999999999999999999999999998776
Q ss_pred ------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccccccc
Q psy16434 528 ------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYL 583 (745)
Q Consensus 528 ------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~l 583 (745)
.+|++|++|||+|+.+++++|++.|. ++|+|+.++ ++.||...||+||..
T Consensus 422 ~L~~~~~~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~----~~G~d~~~g--~~~d~~~~gV~Dp~~ 495 (520)
T cd03344 422 ALDKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD----GFGYDAATG--EYVDMIEAGIIDPTK 495 (520)
T ss_pred HHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC----CEeEECCCC--cccchHhccCeecHH
Confidence 57899999999999999999998764 789999999 999999999999999
Q ss_pred chhhHhhhhhhcchhhcccccce
Q psy16434 584 TKMWALKYATSAANTILQQTKAK 606 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~k 606 (745)
++..+++.|++.+.+++++|...
T Consensus 496 vk~~~l~~A~~~a~~iL~id~~i 518 (520)
T cd03344 496 VVRSALQNAASVASLLLTTEALV 518 (520)
T ss_pred HHHHHHHHHHHHHHHHHhhheEE
Confidence 99999999999999999998654
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. |
| >PRK12851 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=498.01 Aligned_cols=353 Identities=20% Similarity=0.268 Sum_probs=311.8
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccCh----hhHHHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHP----AAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP----~akll~~~s~~qd~~~GDGt 261 (745)
++++..|++++..|+++++|||||+||+|||+++.|+++|||||+||+|+|+++|| +|+|++++|++||+++|||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~GDG- 88 (541)
T PRK12851 10 VEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDVAGDG- 88 (541)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHhhCCC-
Confidence 58999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+|+||++||+++.+|+++|+||..|++||+.|++
T Consensus 89 -------------------------------------------TTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~ 125 (541)
T PRK12851 89 -------------------------------------------TTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVA 125 (541)
T ss_pred -------------------------------------------ccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccce
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSE 421 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~ 421 (745)
.+++.|++++.+. .+.+.|.++|+++++ ++++|++|+++|+..++++ +. ++|.+.. ++..+++
T Consensus 126 ~~~~~L~~~s~~~----~~~~~l~~va~~s~~-----~~~~l~~lv~~Av~~vg~~--g~-----i~i~~~~-~~~~~~~ 188 (541)
T PRK12851 126 AVVEELKANARPV----TTNAEIAQVATISAN-----GDAEIGRLVAEAMEKVGNE--GV-----ITVEESK-TAETELE 188 (541)
T ss_pred HHHHHHHHhccCC----CCHHHHHHHHHHhcc-----ChHHHHHHHHHHHHHhccc--Cc-----eEEEEcc-CCCcceE
Confidence 9999999998763 256678999988763 4799999999999999754 32 5666655 5677899
Q ss_pred eEeeEEEeecccC---------CceeeeCceEEEeccCCCcccccc---------C------------------------
Q psy16434 422 IVQGMVFKRSVEG---------DITKQTKAKIAVYTCPVDIATTET---------K------------------------ 459 (745)
Q Consensus 422 lv~G~~l~~~~~~---------~~~~i~nakIlil~~~Le~~k~e~---------k------------------------ 459 (745)
+++|++|++++.+ +|++++||+|+++|++++....-. +
T Consensus 189 ~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~ 268 (541)
T PRK12851 189 VVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLR 268 (541)
T ss_pred EEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCc
Confidence 9999999999865 478899999999999875321100 0
Q ss_pred -----------------------------------------CCCCcccccccccEEEEEECCeeEEEEEecccc------
Q psy16434 460 -----------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAAE------ 492 (745)
Q Consensus 460 -----------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~------ 492 (745)
+++++++||+|+.+++.+ ++++++.|+...
T Consensus 269 g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~r 345 (541)
T PRK12851 269 GGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK---ENTTIIDGAGSKTEIEGR 345 (541)
T ss_pred CceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc---ceEEEEcCCCCHHHHHHH
Confidence 344556799999998887 888888876431
Q ss_pred ----------------------------cceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-----------------
Q psy16434 493 ----------------------------SRIATLVIRGATENYMDDIERAVDDGVNTFKGITK----------------- 527 (745)
Q Consensus 493 ----------------------------~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~----------------- 527 (745)
+..++|++||+|+.+++|.+|+++||+++++++++
T Consensus 346 i~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g~VpGGGa~e~~~s~~ 425 (541)
T PRK12851 346 VAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAVKA 425 (541)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCchHHHHHHHHH
Confidence 13778999999999999999999999999999876
Q ss_pred -----------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccc
Q psy16434 528 -----------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLT 584 (745)
Q Consensus 528 -----------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lV 584 (745)
.+|++|++|||+|+.+++++|++.| .++|+|+.++ ++.||...||+||+.+
T Consensus 426 L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~----~~~G~d~~~g--~~~d~~~~GIiDp~~v 499 (541)
T PRK12851 426 LDKLETANGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP----GGYGFNAATN--EYGDLYAQGVIDPVKV 499 (541)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC----CCeeeeCCCC--CccchhhccCEecHHH
Confidence 5789999999999999999998875 3689999999 9999999999999999
Q ss_pred hhhHhhhhhhcchhhcccccceee
Q psy16434 585 KMWALKYATSAANTILQQTKAKIA 608 (745)
Q Consensus 585 kG~vL~~A~e~a~mil~IDn~kIl 608 (745)
+..+++.|++.+.|++++|++.+.
T Consensus 500 k~~al~~A~e~A~~iL~id~iI~~ 523 (541)
T PRK12851 500 VRTALQNAASVAGLLLTTEAMVAE 523 (541)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhc
Confidence 999999999999999999986553
|
|
| >TIGR02348 GroEL chaperonin GroL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=496.87 Aligned_cols=351 Identities=23% Similarity=0.315 Sum_probs=308.7
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccCh----hhHHHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHP----AAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP----~akll~~~s~~qd~~~GDGt 261 (745)
++++..|++|+.+++++++|||||+||+|||+++.|+++|||||+||+|+|++.|| +++|++++|++||+++|||
T Consensus 8 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~GDG- 86 (524)
T TIGR02348 8 EEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVAGDG- 86 (524)
T ss_pred HHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCceeCCC-
Confidence 58999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+++||++||+++.+++++|+||..|++||+.|++
T Consensus 87 -------------------------------------------TTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~ 123 (524)
T TIGR02348 87 -------------------------------------------TTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVE 123 (524)
T ss_pred -------------------------------------------cchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCc-ccc
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGL-FNS 420 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~-~dS 420 (745)
.+++.|++++.+. .+.+.|.++|+++++ ++++|++++++|+..++++ +. |.|.. |+.. .+|
T Consensus 124 ~~l~~L~~~s~~~----~~~~~l~~va~ts~~-----~~~~l~~lv~~A~~~v~~~--~~-----i~v~~--g~~~~~~s 185 (524)
T TIGR02348 124 AAVEELKKLSKPV----KGKKEIAQVATISAN-----NDEEIGSLIAEAMEKVGKD--GV-----ITVEE--SKSLETEL 185 (524)
T ss_pred HHHHHHHHhccCC----CCHHHHHHHHHHhcc-----ChHHHHHHHHHHHHHhCcC--Cc-----Eeeec--CCCccccE
Confidence 9999999998863 256789999998875 3789999999999999764 33 44443 6666 679
Q ss_pred eeEeeEEEeecccCC---------ceeeeCceEEEeccCCCcccccc---------C-----------------------
Q psy16434 421 EIVQGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIATTET---------K----------------------- 459 (745)
Q Consensus 421 ~lv~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k~e~---------k----------------------- 459 (745)
++++|++|++++.++ ++.++||+|++++++++....-. +
T Consensus 186 ~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~ 265 (524)
T TIGR02348 186 EVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKL 265 (524)
T ss_pred EEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhc
Confidence 999999999998753 78899999999999865332100 0
Q ss_pred ------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEeccc------
Q psy16434 460 ------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAA------ 491 (745)
Q Consensus 460 ------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l------ 491 (745)
+++++++||+|+.+++.+ ++++++.|+..
T Consensus 266 ~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~~~~ 342 (524)
T TIGR02348 266 RGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK---DNTTIVEGAGDKAAIKA 342 (524)
T ss_pred ccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee---cEEEEEcCCCCHHHHHH
Confidence 335667799999998776 78888887643
Q ss_pred ----------------------------ccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------
Q psy16434 492 ----------------------------ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------- 527 (745)
Q Consensus 492 ----------------------------~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------- 527 (745)
+++.+||++||+|+.+++|.+|+++||+++++++++
T Consensus 343 ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g~VpGGGa~e~~~s~ 422 (524)
T TIGR02348 343 RVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEGIVPGGGVALLRAAA 422 (524)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHH
Confidence 123688999999999999999999999999998876
Q ss_pred ------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccccccc
Q psy16434 528 ------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYL 583 (745)
Q Consensus 528 ------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~l 583 (745)
.+|++|++|||+|+.+++++|++. ++ ++|+|+.++ ++.||...||+||+.
T Consensus 423 ~L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~--~~--~~G~d~~~g--~~~d~~~~gI~Dp~~ 496 (524)
T TIGR02348 423 ALEGLKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES--KG--NFGFNAATG--EYEDLVEAGIIDPTK 496 (524)
T ss_pred HHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc--CC--CeeEeCcCC--cccchhhccCEEcHH
Confidence 578999999999999999999865 33 389999999 999999999999999
Q ss_pred chhhHhhhhhhcchhhccccccee
Q psy16434 584 TKMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~kI 607 (745)
|+..+++.|++.+.+++++|++..
T Consensus 497 vk~~al~~A~~~a~~iL~id~ii~ 520 (524)
T TIGR02348 497 VTRSALQNAASIAGLLLTTEAVVA 520 (524)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhh
Confidence 999999999999999999998653
|
This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118. |
| >PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-54 Score=489.80 Aligned_cols=354 Identities=36% Similarity=0.581 Sum_probs=324.3
Q ss_pred HHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcCccchhhhHhhhhhhhhHHH
Q psy16434 199 FADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNL 278 (745)
Q Consensus 199 la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GDGt~~~~~~~~~~l~~~~~~ 278 (745)
|+++|++||||+||+|||++..|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDG------------------ 62 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDG------------------ 62 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSH------------------
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccc------------------
Confidence 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhcccccccccccC
Q psy16434 279 LRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDV 358 (745)
Q Consensus 279 ~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~~~l~~L~~~s~~~~~~~ 358 (745)
|||+++|+++||+++.+++++|+||..|++||+.|++.+++.|++++++...+
T Consensus 63 --------------------------tts~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~- 115 (485)
T PF00118_consen 63 --------------------------TTSVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINND- 115 (485)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTST-
T ss_pred --------------------------cceeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhhhhhhhcccccc-
Confidence 99999999999999999999999999999999999999999999988773321
Q ss_pred cccccccceeeeccccccCC-ChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccceeEeeEEEeecccCC--
Q psy16434 359 RNVENVTKGIKSAIMSKQYG-NEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGD-- 435 (745)
Q Consensus 359 ~~~~~L~~va~tsl~sK~~~-~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~lv~G~~l~~~~~~~-- 435 (745)
.+.|++++++++++|+.+ +.+.|++++++|+ +..+. .+|++++++.++.|++++||++++|++|++++.+.
T Consensus 116 --~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~-~~~~~---~~~~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~ 189 (485)
T PF00118_consen 116 --DESLLNIAKTSLNSKISSSWSDHLSKLIVDAI-KSIKS---NFDLDNIKIIKIPGGSISDSELINGIVLDKGFSSPNM 189 (485)
T ss_dssp --SHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHH-HHHTT---THHGGGEEEEEEESSSSGGEEEESEEEESSSBSSTTS
T ss_pred --chhhhhhhcccccccccccchhhhhhhHHHHH-Hhhcc---cccccchhhhhhccccccccccccceeeecccccccc
Confidence 178999999999999886 5799999999999 44432 27888899999999999999999999999999875
Q ss_pred ceeeeCceEEEeccCCCccccccC--------------------------------------------------------
Q psy16434 436 ITKQTKAKIAVYTCPVDIATTETK-------------------------------------------------------- 459 (745)
Q Consensus 436 ~~~i~nakIlil~~~Le~~k~e~k-------------------------------------------------------- 459 (745)
|++++||+|++++++|+..+. .+
T Consensus 190 ~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I 268 (485)
T PF00118_consen 190 PKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGI 268 (485)
T ss_dssp BSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTH
T ss_pred ccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccccccchhhhhhhh
Confidence 899999999999999999987 11
Q ss_pred --------------------------CCCCcccccccccEEEEEECCeeEEEEEe--cccccceeEEEEcCCchhhHHHH
Q psy16434 460 --------------------------TPPAASELGYADSVAVDELGDTAVVVFKL--EAAESRIATLVIRGATENYMDDI 511 (745)
Q Consensus 460 --------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g--~~l~~~a~TIIlrG~t~~IldE~ 511 (745)
+++.++.+|+|..+++.++|++++++|.+ +.. +..+||++||+++.+++|+
T Consensus 269 ~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~-~~~~Till~g~t~~~l~e~ 347 (485)
T PF00118_consen 269 LVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCLS-SKICTILLRGPTEFELEER 347 (485)
T ss_dssp EEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSESS-SSEEEEEEEESSHHHHHHH
T ss_pred hccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhhcccccccccccccccccc-cCceEEEeccccchhHHHH
Confidence 55677789999999999999999999995 444 8899999999999999999
Q ss_pred HHHHHHHHHHHHHHHH------------------------------------------HHHHHHHhhccchhhHHHHHHH
Q psy16434 512 ERAVDDGVNTFKGITK------------------------------------------VFVKTLAENTGVKSNEVISKLY 549 (745)
Q Consensus 512 eral~DAL~vlk~~~~------------------------------------------~IPr~LaeNAGld~~~vlsKL~ 549 (745)
+++++||+++++.+++ .+|++|++|||+|+..+++++.
T Consensus 348 ~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~ 427 (485)
T PF00118_consen 348 ERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLK 427 (485)
T ss_dssp HHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhH
Confidence 9999999999999997 6899999999999999999999
Q ss_pred HHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccceee
Q psy16434 550 SAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKIA 608 (745)
Q Consensus 550 ~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kIl 608 (745)
..|+.+. ++|+|+.++ ++.+|...+++||+.++..+++.|++.+.+++++|++...
T Consensus 428 ~~h~~~~-~~g~d~~~~--~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~ 483 (485)
T PF00118_consen 428 SFHNNGN-NYGIDLDTG--EIVDMKEAGILDPLLVKISALKSAVEIASLILRIDEIIMA 483 (485)
T ss_dssp HHHHSTT-TEEEETTTT--EEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred hhhcccc-ccCcCccCC--ceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9886655 899999999 9999999999999999999999999999999999987653
|
Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A .... |
| >CHL00093 groEL chaperonin GroEL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-54 Score=494.94 Aligned_cols=352 Identities=20% Similarity=0.261 Sum_probs=305.2
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhH----HHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAK----LIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~ak----ll~~~s~~qd~~~GDGt 261 (745)
++++...++||..|+++|+|||||+||+|||+++.|+++|||||+||||+|+++||+++ |+++++++|++++|||
T Consensus 9 ~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e~GDG- 87 (529)
T CHL00093 9 DNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDG- 87 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCceecCC-
Confidence 58999999999999999999999999999999999999999999999999999999985 7777888888788888
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+++||++||++|.+|+++|+||+.|++||++|++
T Consensus 88 -------------------------------------------TTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~ 124 (529)
T CHL00093 88 -------------------------------------------TTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQ 124 (529)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccce
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSE 421 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~ 421 (745)
.+++.|++++.+. .+.+.|.++|+++++ +++.|++|+++|+.+++++ +.++ +.. .+++..+++
T Consensus 125 ~~l~~L~~~s~~v----~d~~~L~~VA~ts~~-----~~~~l~~lv~eAv~~vg~~--g~i~-----~~~-g~~~~~~~~ 187 (529)
T CHL00093 125 YVVSQIAEYARPV----EDIQAITQVASISAG-----NDEEVGSMIADAIEKVGRE--GVIS-----LEE-GKSTVTELE 187 (529)
T ss_pred HHHHHHHHhCCCC----CCHHHHHHHHHHhcc-----ChHHHHHHHHHHHHHhccC--Ccee-----ecC-CCccceeeE
Confidence 9999999998773 256779999999887 4789999999999999864 3333 221 223456789
Q ss_pred eEeeEEEeecccCC-----ce----eeeCceEEEeccCCCccccccC---------------------------------
Q psy16434 422 IVQGMVFKRSVEGD-----IT----KQTKAKIAVYTCPVDIATTETK--------------------------------- 459 (745)
Q Consensus 422 lv~G~~l~~~~~~~-----~~----~i~nakIlil~~~Le~~k~e~k--------------------------------- 459 (745)
+++|+.|+++|.++ ++ +++||+|++++++|++.+.+..
T Consensus 188 ~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~ 267 (529)
T CHL00093 188 ITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKL 267 (529)
T ss_pred EEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhh
Confidence 99999999998764 43 5899999999999998743210
Q ss_pred ------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEe---------
Q psy16434 460 ------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKL--------- 488 (745)
Q Consensus 460 ------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g--------- 488 (745)
+++++++||+|+.+++.+ +++++|.+
T Consensus 268 ~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~~~~~~~~~i~~~ 344 (529)
T CHL00093 268 RGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK---DSTTIIADGNEEQVKAR 344 (529)
T ss_pred cccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec---CEEEEEecCcHHHHHHH
Confidence 344567799999998876 67788863
Q ss_pred cc------------------------cccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-----------------
Q psy16434 489 EA------------------------AESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK----------------- 527 (745)
Q Consensus 489 ~~------------------------l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~----------------- 527 (745)
+. +++..++|++||+|+.+++|.+|+++||+++++++++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~ 424 (529)
T CHL00093 345 CEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVHLSEN 424 (529)
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 11 1124778999999999999999999999999999876
Q ss_pred -------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccc
Q psy16434 528 -------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLY 582 (745)
Q Consensus 528 -------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~ 582 (745)
.+|++|++|||+|+..++++++.. ..++|||+.++ ++.||...||+||+
T Consensus 425 L~~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~----~~~~G~d~~~g--~~~d~~~~GI~Dp~ 498 (529)
T CHL00093 425 LKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ----DFEIGYNAANN--KFVNMYEAGIIDPA 498 (529)
T ss_pred HHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc----CCCEeEECCCC--cccchHhccCEEcH
Confidence 578999999999999999999753 34799999999 99999999999999
Q ss_pred cchhhHhhhhhhcchhhccccccee
Q psy16434 583 LTKMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 583 lVkG~vL~~A~e~a~mil~IDn~kI 607 (745)
.|+..+++.|++.+++++++|.+..
T Consensus 499 ~vk~~al~~A~e~a~~iL~id~ii~ 523 (529)
T CHL00093 499 KVTRSALQNAASIASMILTTECIIV 523 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765
|
|
| >PLN03167 Chaperonin-60 beta subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=502.09 Aligned_cols=354 Identities=21% Similarity=0.290 Sum_probs=311.0
Q ss_pred HHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChh----hHHHHHHHhhhhchhcCccc
Q psy16434 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPA----AKLIILGSQMQEEEMGDGTN 262 (745)
Q Consensus 187 ~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~----akll~~~s~~qd~~~GDGt~ 262 (745)
++|...+.+|..|+++|+|||||+||+|||+++.|+++|||||+||+|+|+++||+ |+|++++|++||+++|||
T Consensus 66 ~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~evGDG-- 143 (600)
T PLN03167 66 SAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDG-- 143 (600)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhhhhhCCC--
Confidence 79999999999999999999999999999999999999999999999999999995 999999999999999999
Q ss_pred hhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHH
Q psy16434 263 FVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAK 342 (745)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~~ 342 (745)
|||+++||++||+++.++++.|+||..|++||++|.+.
T Consensus 144 ------------------------------------------TTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~ 181 (600)
T PLN03167 144 ------------------------------------------TTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKA 181 (600)
T ss_pred ------------------------------------------ccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999
Q ss_pred HHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccc-e
Q psy16434 343 TLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNS-E 421 (745)
Q Consensus 343 ~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS-~ 421 (745)
+++.|++++.+. .+ +.|.++|.+++++ ++.|++|+++|+.+++++ +. |.+ ..|++.+|+ +
T Consensus 182 ~~~~L~~~s~~v----~d-~~L~~vA~tS~~~-----~~~i~~liaeAv~~Vg~~--g~-----i~v--~~g~s~~dsl~ 242 (600)
T PLN03167 182 LVKELKKMSKEV----ED-SELADVAAVSAGN-----NYEVGNMIAEAMSKVGRK--GV-----VTL--EEGKSAENNLY 242 (600)
T ss_pred HHHHHHHhcccC----CH-HHHHHHHHHhccC-----cHHHHHHHHHHHHHhccC--Cc-----EEe--ccCCCccceeE
Confidence 999999988763 23 4699999999875 578999999999999864 33 322 268899987 9
Q ss_pred eEeeEEEeecccCC---------ceeeeCceEEEeccCCCccccccC---------------------------------
Q psy16434 422 IVQGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIATTETK--------------------------------- 459 (745)
Q Consensus 422 lv~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k~e~k--------------------------------- 459 (745)
+++|+.|+++|.++ +++++||+||+++++++..+.-.+
T Consensus 243 ~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~ 322 (600)
T PLN03167 243 VVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLR 322 (600)
T ss_pred EEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhcc
Confidence 99999999998754 889999999999998775542100
Q ss_pred -----------------------------------------CCCCcccccccccEEEEE-----ECC--------eeEEE
Q psy16434 460 -----------------------------------------TPPAASELGYADSVAVDE-----LGD--------TAVVV 485 (745)
Q Consensus 460 -----------------------------------------~~p~a~~LG~a~~vq~~e-----iGd--------tsvti 485 (745)
+++.+++||+|+++++.+ +|+ +++++
T Consensus 323 g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~ 402 (600)
T PLN03167 323 GSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQ 402 (600)
T ss_pred ccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHH
Confidence 344567899999999988 776 46777
Q ss_pred EEecc------------------cccceeEEE-EcCCchhhHHHHHHHHHHHHHHHHHHHH-------------------
Q psy16434 486 FKLEA------------------AESRIATLV-IRGATENYMDDIERAVDDGVNTFKGITK------------------- 527 (745)
Q Consensus 486 ~~g~~------------------l~~~a~TII-lrG~t~~IldE~eral~DAL~vlk~~~~------------------- 527 (745)
|.++. + +++++++ +||+|+.+++|.+|+++||+++++++++
T Consensus 403 i~~~~~~~~~~~~~~~l~~Ri~~l-~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~ 481 (600)
T PLN03167 403 IKNLIEAAEQDYEKEKLNERIAKL-SGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVD 481 (600)
T ss_pred HHhhhhccCCHHHHHHHHHHHhhc-CCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 76643 2 3356665 9999999999999999999999999887
Q ss_pred -----------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccc
Q psy16434 528 -----------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLT 584 (745)
Q Consensus 528 -----------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lV 584 (745)
.+|++||+|||+|+.+++++|+.. +..++|||+.++ ++.||...||+||+.|
T Consensus 482 ~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~---~~~~~G~d~~~g--~~~dm~~~GI~Dp~~V 556 (600)
T PLN03167 482 AIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSN---DNPKFGYNAATG--KYEDLMAAGIIDPTKV 556 (600)
T ss_pred HHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhc---CCCCEeEeCCCC--cCcchHhccCeecHHH
Confidence 346999999999999999999743 345799999999 9999999999999999
Q ss_pred hhhHhhhhhhcchhhcccccceeee
Q psy16434 585 KMWALKYATSAANTILQQTKAKIAV 609 (745)
Q Consensus 585 kG~vL~~A~e~a~mil~IDn~kIll 609 (745)
+..+++.|++.+.+++++|.+.+..
T Consensus 557 k~~al~~A~~~A~~iL~iD~iI~~~ 581 (600)
T PLN03167 557 VRCCLEHAASVAKTFLTSDCVVVEI 581 (600)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999887754
|
|
| >PRK14104 chaperonin GroEL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=489.11 Aligned_cols=352 Identities=18% Similarity=0.258 Sum_probs=308.9
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhcccc----ChhhHHHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE----HPAAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~----hP~akll~~~s~~qd~~~GDGt 261 (745)
++++..|++|+..|+++|+|||||+||+|||+++.|+++|||||+||+|+|+++ ||.++|++++|++||+++|||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e~GDG- 88 (546)
T PRK14104 10 VDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAAGDG- 88 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhcccccCc-
Confidence 589999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+|+||++||+++.++++.|+||+.|++||++|++
T Consensus 89 -------------------------------------------TTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~ 125 (546)
T PRK14104 89 -------------------------------------------TTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVE 125 (546)
T ss_pred -------------------------------------------ccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCc-ccc
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGL-FNS 420 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~-~dS 420 (745)
.+++.|++++.+. + +.+.|.++|++++++| +.|++++++|+.+++++ +. |.+..+ ++. .++
T Consensus 126 ~~~~~L~~~a~~v--~--~~~~l~~va~~s~~~d-----~~i~~lv~~Av~~vg~~--g~-----i~v~~~--~~~~~~~ 187 (546)
T PRK14104 126 AVVADLVKNSKKV--T--SNDEIAQVGTISANGD-----AEIGKFLADAMKKVGNE--GV-----ITVEEA--KSLETEL 187 (546)
T ss_pred HHHHHHHHhcccC--C--CHHHHHHHHHHHhcCc-----hHHHHHHHHHHHHhccC--Cc-----eeeEec--ccccceE
Confidence 9999999998773 2 3356899999988764 77999999999999864 44 444332 345 589
Q ss_pred eeEeeEEEeecccCC---------ceeeeCceEEEeccCCCcccccc---------C-----------------------
Q psy16434 421 EIVQGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIATTET---------K----------------------- 459 (745)
Q Consensus 421 ~lv~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k~e~---------k----------------------- 459 (745)
++++|+.|++++.++ +.+++||+|++++..++....-. +
T Consensus 188 ~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~ 267 (546)
T PRK14104 188 DVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRL 267 (546)
T ss_pred EEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcc
Confidence 999999999999875 56788999999996654322100 0
Q ss_pred ------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEecccc-----
Q psy16434 460 ------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAAE----- 492 (745)
Q Consensus 460 ------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~----- 492 (745)
+++++.+||+|.+++ +|+++++++.|+...
T Consensus 268 ~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~---~~~~~~~~i~g~~~~~~i~~ 344 (546)
T PRK14104 268 RGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVM---IDKENTTIVNGAGKKADIEA 344 (546)
T ss_pred cceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEE---EcCCEEEEEeCCCCHHHHHH
Confidence 455667899999876 477899999887541
Q ss_pred -----------------------------cceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------
Q psy16434 493 -----------------------------SRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------- 527 (745)
Q Consensus 493 -----------------------------~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------- 527 (745)
++.+||++||+|+.+++|.+|+++||+++++++++
T Consensus 345 ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g~VpGGGa~e~~~s~ 424 (546)
T PRK14104 345 RVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASE 424 (546)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcCcCchHHHHHHHH
Confidence 37899999999999999999999999999998776
Q ss_pred ------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccccccc
Q psy16434 528 ------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYL 583 (745)
Q Consensus 528 ------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~l 583 (745)
.+|++|++|||+|+.+++++|+..| +.++|+|+.++ ++.|+...||+||+.
T Consensus 425 ~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~---~~~~G~d~~~g--~~~d~~~~GI~Dp~~ 499 (546)
T PRK14104 425 QLKGIKTKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKE---QYSYGFDSQTG--EYGNLVSKGIIDPTK 499 (546)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcC---CCcEeEeCCCC--ceeehHhcCCEEcHH
Confidence 5789999999999999999998653 34689999999 999999999999999
Q ss_pred chhhHhhhhhhcchhhccccccee
Q psy16434 584 TKMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~kI 607 (745)
|+..+++.|++.+.+++++|++..
T Consensus 500 vk~~al~~A~~~a~~iL~id~~I~ 523 (546)
T PRK14104 500 VVRTAIQNAASVAALLITTEAMVA 523 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998773
|
|
| >KOG0360|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-53 Score=453.11 Aligned_cols=379 Identities=31% Similarity=0.477 Sum_probs=342.3
Q ss_pred ccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcC
Q psy16434 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGD 259 (745)
Q Consensus 180 ~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GD 259 (745)
+..+| +..|..|..|+.+++++++|||||-|+|||+++..|++++||||+|||+.|.++||++|++++.++.||+++||
T Consensus 13 e~~sg-~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evgD 91 (545)
T KOG0360|consen 13 ERLSG-ERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVGD 91 (545)
T ss_pred Ccccc-hhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccccC
Confidence 35566 57888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q psy16434 260 GTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLA 339 (745)
Q Consensus 260 Gt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a 339 (745)
| ||+|+++|++||++|.+|+..++||+.|++||+.|
T Consensus 92 g--------------------------------------------ttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~a 127 (545)
T KOG0360|consen 92 G--------------------------------------------TTSVVIIAAELLKNADELVKTKIHPTRIISGYRLA 127 (545)
T ss_pred C--------------------------------------------ceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHH
Confidence 9 99999999999999999999999999999999999
Q ss_pred HHHHHHhccc-ccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCC---CCCCCCccceEEEEccC
Q psy16434 340 LAKTLEILPT-LTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPD---GSSSFNVDNVRITKILG 414 (745)
Q Consensus 340 ~~~~l~~L~~-~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~---~~~~~dl~~I~I~ki~G 414 (745)
...+++++.+ ++.+ .+...++.|.++++|+++||+++. .++|++++++|++.+.-- ......++.++|.|-.|
T Consensus 128 c~e~~k~i~~~~~~~--vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG 205 (545)
T KOG0360|consen 128 CIEAVKYITEGLSKP--VDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHG 205 (545)
T ss_pred HHHHHHHhhccceee--hhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCC
Confidence 9999999976 4443 445678899999999999999986 699999999999876421 22345678899999999
Q ss_pred CCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC---------------------------------
Q psy16434 415 SGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK--------------------------------- 459 (745)
Q Consensus 415 gs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k--------------------------------- 459 (745)
++..+|.++.|+.++....+ ||+++.|+||+++++.|.-.+....
T Consensus 206 ~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~g 285 (545)
T KOG0360|consen 206 KSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATG 285 (545)
T ss_pred ccchhheeecceeeeccHhhhccccccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcC
Confidence 99999999999999998865 5999999999999998876554321
Q ss_pred -------------------------------------------------------CCCCcccccccccEEEEEECCeeEE
Q psy16434 460 -------------------------------------------------------TPPAASELGYADSVAVDELGDTAVV 484 (745)
Q Consensus 460 -------------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvt 484 (745)
+...+..+|.|+.+.+.++||+.++
T Consensus 286 anvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~i 365 (545)
T KOG0360|consen 286 ANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELI 365 (545)
T ss_pred CcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeE
Confidence 5678889999999999999999999
Q ss_pred EEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-------------------------------------
Q psy16434 485 VFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------- 527 (745)
Q Consensus 485 i~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------- 527 (745)
++.|.+- .++.|++||+++..++|++|+++||++++|..++
T Consensus 366 likg~ka--~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaef 443 (545)
T KOG0360|consen 366 LIKGTKA--TSASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEF 443 (545)
T ss_pred EeccCcc--ceeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHH
Confidence 9999874 4899999999999999999999999999999886
Q ss_pred -----HHHHHHHhhccchhhHHHHHHHHHhhc--------CCccceeeecCCCcceeecccccccccccchhhHhhhhhh
Q psy16434 528 -----VFVKTLAENTGVKSNEVISKLYSAHNE--------GKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATS 594 (745)
Q Consensus 528 -----~IPr~LaeNAGld~~~vlsKL~~~h~~--------g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e 594 (745)
+||++|+-||+.|+++++++++..|+. +..++|.|+.+| ++.+....++.+|.+++-..++.+++
T Consensus 444 a~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng--~~~dn~~~g~~ep~~~kvksLk~ate 521 (545)
T KOG0360|consen 444 AAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLING--KIRDNKSAGSFEPPIVKVKSLKFATE 521 (545)
T ss_pred HHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhCcccccc--EeecceeeeeeccceeehhhhHHHHH
Confidence 689999999999999999999988753 346789999999 99999999999999999999999999
Q ss_pred cchhhcccccceeee
Q psy16434 595 AANTILQQTKAKIAV 609 (745)
Q Consensus 595 ~a~mil~IDn~kIll 609 (745)
++..+++||+...+.
T Consensus 522 aaitiLriD~li~l~ 536 (545)
T KOG0360|consen 522 AAITILRIDDLIKLL 536 (545)
T ss_pred hhhhhcchhhhhhcC
Confidence 999999999877654
|
|
| >KOG0364|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=447.06 Aligned_cols=387 Identities=26% Similarity=0.444 Sum_probs=357.5
Q ss_pred ceeecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHH
Q psy16434 171 PAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGS 250 (745)
Q Consensus 171 ~~~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s 250 (745)
|.-.+..+...++|. .+...|++++.+++|.++|+|||+.|.||+.++.|.+..||||..||++|++.||+|+-+.+++
T Consensus 4 pv~~~~~~~~re~g~-kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmiel~ 82 (527)
T KOG0364|consen 4 PVLVLSKNTKRESGR-KVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELS 82 (527)
T ss_pred ceeecccccCcCccc-cccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhhhh
Confidence 444556677788884 7889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHH
Q psy16434 251 QMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPS 330 (745)
Q Consensus 251 ~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~ 330 (745)
..||+++||| ||||++||+|+|.++.-++++|+||+
T Consensus 83 rtqdeevgdg--------------------------------------------ttsvi~lagE~L~~~~~~l~~~~Hp~ 118 (527)
T KOG0364|consen 83 RTQDEEVGDG--------------------------------------------TTSVIILAGEMLNVAEPFLEEGIHPT 118 (527)
T ss_pred hcccccccCC--------------------------------------------ceeeeeehHHHhhhcchhhhcCcchH
Confidence 9999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCC-ChhhHHHHHHHHHHhhcCCCCCCCCc-cceE
Q psy16434 331 EIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYG-NEDFLTDLITKACVSILPDGSSSFNV-DNVR 408 (745)
Q Consensus 331 ~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~-~~~~ls~LivdAv~~v~~~~~~~~dl-~~I~ 408 (745)
.|+++|.+|+..+++.+++++.+ +|.++...++++.+++..+|+.+ |.+..++|..+|+.+|+.+.+..+|+ .+.+
T Consensus 119 ~i~ka~~~aled~~~~~~~~~~~--~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~k 196 (527)
T KOG0364|consen 119 VIIKAYIKALEDNIRALDKISIP--VDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAK 196 (527)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc--CCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhcc
Confidence 99999999999999999988876 55678888999999999999998 57999999999999998774445887 5899
Q ss_pred EEEccCCCcccceeEeeEEEeecccCC--ceeeeCceEEEeccCCCccccccC---------------------------
Q psy16434 409 ITKILGSGLFNSEIVQGMVFKRSVEGD--ITKQTKAKIAVYTCPVDIATTETK--------------------------- 459 (745)
Q Consensus 409 I~ki~Ggs~~dS~lv~G~~l~~~~~~~--~~~i~nakIlil~~~Le~~k~e~k--------------------------- 459 (745)
++|++||.+.+|++++|+.+++...|+ .+.++||+|.+++|+|+|.|-+..
T Consensus 197 veKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~ 276 (527)
T KOG0364|consen 197 VEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCE 276 (527)
T ss_pred ccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHH
Confidence 999999999999999999999999886 778999999999999999987632
Q ss_pred -------------------------------------------------------CCCCccccc-ccccEEEEEECCeeE
Q psy16434 460 -------------------------------------------------------TPPAASELG-YADSVAVDELGDTAV 483 (745)
Q Consensus 460 -------------------------------------------------------~~p~a~~LG-~a~~vq~~eiGdtsv 483 (745)
+++.+++.| .|+.+++.++||..|
T Consensus 277 ~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf 356 (527)
T KOG0364|consen 277 VIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYF 356 (527)
T ss_pred HHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhccccchhhhhcCceeccChhhCchhccCcccceeeeeccCchhh
Confidence 667778888 477999999999999
Q ss_pred EEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------
Q psy16434 484 VVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------ 527 (745)
Q Consensus 484 ti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------ 527 (745)
++|..|+. +++|||++||++..|++|.+|.+.||+.+.++.+.
T Consensus 357 ~f~~~Ck~-pkaCtillrg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~A 435 (527)
T KOG0364|consen 357 TFFTDCKE-PKACTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGA 435 (527)
T ss_pred hhhhhcCC-CcceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhccchhh
Confidence 99999998 99999999999999999999999999999998774
Q ss_pred ------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcc
Q psy16434 528 ------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601 (745)
Q Consensus 528 ------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~ 601 (745)
.+||+|++|+|.++..+++.++..|+.|....|+|..++ .+.||...++|+|+.+|-...+.+.+.++++++
T Consensus 436 va~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg--~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLR 513 (527)
T KOG0364|consen 436 VAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETG--VIVDMVELGIWEPEAVKLQTGKTAVESACLLLR 513 (527)
T ss_pred hhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCcee--eEeeeeeccccchhhhhhhhhhHHHHHHHHHHh
Confidence 579999999999999999999999999988889998888 999999999999999999999999999999999
Q ss_pred ccccee
Q psy16434 602 QTKAKI 607 (745)
Q Consensus 602 IDn~kI 607 (745)
+|++.-
T Consensus 514 IddIvs 519 (527)
T KOG0364|consen 514 IDDIVS 519 (527)
T ss_pred hhceee
Confidence 998643
|
|
| >KOG0359|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-48 Score=412.30 Aligned_cols=364 Identities=25% Similarity=0.391 Sum_probs=339.2
Q ss_pred HHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcCccchhhh
Q psy16434 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVII 266 (745)
Q Consensus 187 ~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GDGt~~~~~ 266 (745)
.+..-|++++..+.+.+++.+||+|..||+++..|++.+|+||.+.+++|++.||.+-|+..++.+||+..|||
T Consensus 17 aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDG------ 90 (520)
T KOG0359|consen 17 AALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDG------ 90 (520)
T ss_pred cceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCC------
Confidence 45566899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHh
Q psy16434 267 FAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEI 346 (745)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~~~l~~ 346 (745)
||++|+|+|||+++|..+|..|+||..|.+||+.|.+.++++
T Consensus 91 --------------------------------------ttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~ 132 (520)
T KOG0359|consen 91 --------------------------------------TTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEF 132 (520)
T ss_pred --------------------------------------cceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999
Q ss_pred cccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccceeEee
Q psy16434 347 LPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQG 425 (745)
Q Consensus 347 L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~lv~G 425 (745)
|++.+.+ .+++.|..+++|++++|.... .+.+++++++|++.+. .+.+.+|+.+++|.++.-.+.+|+.+++|
T Consensus 133 L~k~~~~-----~~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~-~~~~~idl~mveim~mq~~s~~dT~~v~g 206 (520)
T KOG0359|consen 133 LEKVSRE-----VDRETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIR-RQEEPIDLFMVEIMEMQHKSLHDTSLVQG 206 (520)
T ss_pred hhccccc-----hhHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeec-cCCCCcchhHHHhhhhccCchhhhHHhhh
Confidence 9976655 468899999999999999764 6999999999999988 33467899999999999999999999999
Q ss_pred EEEeecccCC--ceeeeCceEEEeccCCCccccccC--------------------------------------------
Q psy16434 426 MVFKRSVEGD--ITKQTKAKIAVYTCPVDIATTETK-------------------------------------------- 459 (745)
Q Consensus 426 ~~l~~~~~~~--~~~i~nakIlil~~~Le~~k~e~k-------------------------------------------- 459 (745)
.+++++..|+ |++.+|++||++|.+|||.|++.+
T Consensus 207 lvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinq 286 (520)
T KOG0359|consen 207 LVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQ 286 (520)
T ss_pred hhccCCCCCcccccchhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecc
Confidence 9999999995 999999999999999999999854
Q ss_pred ------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEecccccceeE
Q psy16434 460 ------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIAT 497 (745)
Q Consensus 460 ------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~~~a~T 497 (745)
++++++.||+|+.+++..+|+++||+++++.. ++++|
T Consensus 287 kGidp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~nsvddLtp~~LG~aglVye~tlGEEkfTFIE~~~~-p~S~T 365 (520)
T KOG0359|consen 287 KGIDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNN-PSSVT 365 (520)
T ss_pred cCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhhccceecccccCChhhccccceeEEeeccceeeEeeecCCC-CcceE
Confidence 88999999999999999999999999999998 99999
Q ss_pred EEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------------HHHHHHHh
Q psy16434 498 LVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------------VFVKTLAE 535 (745)
Q Consensus 498 IIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------------~IPr~Lae 535 (745)
|+++|++++.+..++.+++|++.++++.++ .+|++|++
T Consensus 366 iLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~ 445 (520)
T KOG0359|consen 366 ILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAK 445 (520)
T ss_pred EEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHH
Confidence 999999999999999999999999999887 68999999
Q ss_pred hccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccc
Q psy16434 536 NTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKA 605 (745)
Q Consensus 536 NAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~ 605 (745)
|+|+|..+.+.+|.++|... ..|+|+.+| .-++....|+||.+.|+..++..++-.++.++-+|.+
T Consensus 446 nsg~D~qe~l~~l~~e~~~~--~~g~dl~~g--~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi 511 (520)
T KOG0359|consen 446 NSGLDEQETLVSLKKEHEVT--LRGLDLFRG--EECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEI 511 (520)
T ss_pred hcCCchHHHHHHHHHhhhhh--hcccccccC--CccchhhccccchHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 99999999999999988765 459999999 8888888899999999999999888888877777754
|
|
| >KOG0357|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=320.55 Aligned_cols=331 Identities=26% Similarity=0.395 Sum_probs=262.1
Q ss_pred ceeecccc--cccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHH
Q psy16434 171 PAAIFQYY--DKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIIL 248 (745)
Q Consensus 171 ~~~~~~~~--~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~ 248 (745)
|..++.+. .....|. ++.++|+.+..+++.+++|||||+|++|+++.+.|++++|||| .|+++++|+.
T Consensus 11 ~~iiLrDQd~~~Ri~G~-ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakLmv~ 80 (400)
T KOG0357|consen 11 PFIILRDQERKDRLFGL-DAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKLIVI 80 (400)
T ss_pred ceEEeeeccCCchhhHH-HHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHHHHH
Confidence 55545433 3344574 8999999999999999999999999999999999999999999 7899999999
Q ss_pred HHhhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCC
Q psy16434 249 GSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLT 328 (745)
Q Consensus 249 ~s~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gih 328 (745)
.+.+||.+.||| ||.+++|++.+++++.+++..|+|
T Consensus 81 LS~sqd~eIgdG--------------------------------------------tTgVvvLa~alleqa~~li~~~ih 116 (400)
T KOG0357|consen 81 LSKSQDDEIGDG--------------------------------------------TTGVVVLAGALLEQAHELIDRGIH 116 (400)
T ss_pred hcccchhhhccC--------------------------------------------CcccEEecccchHhHHhhcccccc
Confidence 999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCC---CCCCCCcc
Q psy16434 329 PSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPD---GSSSFNVD 405 (745)
Q Consensus 329 P~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~---~~~~~dl~ 405 (745)
|..|..||..+.+.+++.|++++.+.. |.+++.+ ++..+.+ +..-||-+
T Consensus 117 piki~~g~e~~~~~av~~l~~i~~~~e---------------------------f~emi~~-vK~~ga~l~icqwgfdde 168 (400)
T KOG0357|consen 117 PIKIAQGYEKAKVVAVEHLDEISDPFE---------------------------FEEMIQQ-IKETGANLAICQWGFDDE 168 (400)
T ss_pred hhHHHHhhhhHHHhhhhhhhhhccccc---------------------------HHHHHHH-HHhhCCcEEEEecccCch
Confidence 999999999999999999998765521 2222222 1222221 00001100
Q ss_pred --ceEEEEccCCCcccceeEeeEEEeecccCCceeeeCceEEEeccC-CCccccccCCCCCcccccccccEEEEEECC--
Q psy16434 406 --NVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCP-VDIATTETKTPPAASELGYADSVAVDELGD-- 480 (745)
Q Consensus 406 --~I~I~ki~Ggs~~dS~lv~G~~l~~~~~~~~~~i~nakIlil~~~-Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd-- 480 (745)
.. ..-+.+.-.+||-|--++ -|+|.... +- + -.++++++.||.|+.+++..+|.
T Consensus 169 anhl----l~~n~lpavrwVGGpEiE-------------liAiaT~grIV-p---rF~eL~~~kLG~aglVrE~sfgttk 227 (400)
T KOG0357|consen 169 ANHL----LLQNNLPAVRWVGGPEIE-------------LIAIATGGRIV-P---RFSELTAEKLGFAGLVREISFGTTK 227 (400)
T ss_pred hhhH----HhhcCCCceeecCCcceE-------------EEEeecCCeee-c---cHhhhCHhhccccceEEEEeccccc
Confidence 00 011122223333332111 11111110 00 0 01567888999999999999997
Q ss_pred eeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH---------------------------------
Q psy16434 481 TAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK--------------------------------- 527 (745)
Q Consensus 481 tsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~--------------------------------- 527 (745)
++..+++.|++ ++++||.+||.+..|++|.+|++|||||+++++++
T Consensus 228 dkmlviEqc~n-skaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya 306 (400)
T KOG0357|consen 228 DKMLVIEQCKN-SKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYA 306 (400)
T ss_pred ceEEEEEecCC-CceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHH
Confidence 89999999998 99999999999999999999999999999999987
Q ss_pred ---------HHHHHHHhhccchhhHHHHHHHHHhh-cCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcch
Q psy16434 528 ---------VFVKTLAENTGVKSNEVISKLYSAHN-EGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAAN 597 (745)
Q Consensus 528 ---------~IPr~LaeNAGld~~~vlsKL~~~h~-~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~ 597 (745)
+||..|++|+|++|.+.++++++.+- .+++.+|+|.... ..-||....++|++.-|..-+..|+....
T Consensus 307 ~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~~~lGidcl~~--G~nDMk~~~vie~l~~KkqQi~laTQ~vr 384 (400)
T KOG0357|consen 307 FRAFADALESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHK--GTNDMKEQHVIETLIGKKQQISLATQMVR 384 (400)
T ss_pred HHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHhcCcccCcchhcc--CchhhhhhccHHHhhhhHHHHHHHHHHHH
Confidence 68999999999999999999988654 3567899998876 77899999999999999999999999999
Q ss_pred hhccccccee
Q psy16434 598 TILQQTKAKI 607 (745)
Q Consensus 598 mil~IDn~kI 607 (745)
|+++|||+++
T Consensus 385 MiLKiddv~~ 394 (400)
T KOG0357|consen 385 MILKIDDVRK 394 (400)
T ss_pred Hhhhccceec
Confidence 9999999876
|
|
| >KOG0356|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=320.64 Aligned_cols=351 Identities=22% Similarity=0.304 Sum_probs=303.7
Q ss_pred cccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChh----hHHHHHHHhhhh
Q psy16434 179 DKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPA----AKLIILGSQMQE 254 (745)
Q Consensus 179 ~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~----akll~~~s~~qd 254 (745)
.+-.+| .+++...++++..|++++.+|+||+||+++|-..+|.|.|||||.|+.+++.+.++. |+++.+++.+.+
T Consensus 17 k~i~fg-~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN 95 (550)
T KOG0356|consen 17 KDIKFG-KDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTN 95 (550)
T ss_pred cccccC-HHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhcc
Confidence 344566 469999999999999999999999999999999999999999999999999999997 999999999999
Q ss_pred chhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHH
Q psy16434 255 EEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVN 334 (745)
Q Consensus 255 ~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~ 334 (745)
+..||| ||++++|+.++..++.+-+.+|.+|..|.+
T Consensus 96 ~~agdG--------------------------------------------tttatvlar~i~~eg~~~v~~G~npv~irr 131 (550)
T KOG0356|consen 96 EEAGDG--------------------------------------------TTTATVLARAIAKEGFEKVAKGANPVEIRR 131 (550)
T ss_pred CccccC--------------------------------------------cchHHHHHHHHHHHHHHHHhccCCchhhhh
Confidence 999998 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccC
Q psy16434 335 GYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILG 414 (745)
Q Consensus 335 g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~G 414 (745)
|+.+|.+...+.|++++++ +...+++.++|.+|.++ +...++++.+|+.+++++ +. |.|+ .|
T Consensus 132 Gi~~av~~vv~~L~k~sk~----Vtt~eeIaqVAtiSAng-----D~~ig~li~~a~~kvG~~--GV-----Itv~--~g 193 (550)
T KOG0356|consen 132 GIMLAVDAVVDELKKMSKP----VTTPEEIAQVATISANG-----DKEIGNLISDAMKKVGRK--GV-----ITVK--DG 193 (550)
T ss_pred hHHHHHHHHHHHHHHhCCC----CCCHHHHHHHHhhhcCC-----cHHHHHHHHHHHHHhCcC--Ce-----EEee--cC
Confidence 9999999999999999987 35678899999988886 788999999999999876 33 4443 57
Q ss_pred CCcccc-eeEeeEEEeecccCC---------ceeeeCceEEEeccCCCccccccC-------------------------
Q psy16434 415 SGLFNS-EIVQGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIATTETK------------------------- 459 (745)
Q Consensus 415 gs~~dS-~lv~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k~e~k------------------------- 459 (745)
.++.|. ++++||.|+++|.++ ..+++||++|+.+.+++..+.-..
T Consensus 194 kt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~ 273 (550)
T KOG0356|consen 194 KTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPALELALAKRRPLLIIAEDIDGEALA 273 (550)
T ss_pred CccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHHHhHHHHHhhhccCceEEEehhcchhHHH
Confidence 777665 899999999999874 457899999998876654332100
Q ss_pred --------------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEec
Q psy16434 460 --------------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLE 489 (745)
Q Consensus 460 --------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~ 489 (745)
+.....+||.+..+.... +..+++.|.
T Consensus 274 tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtk---d~t~ll~g~ 350 (550)
T KOG0356|consen 274 TLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTK---DDTMLLKGK 350 (550)
T ss_pred HHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEec---CcceeeCCC
Confidence 455668899998887666 667777652
Q ss_pred ----------------------------------ccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH--------
Q psy16434 490 ----------------------------------AAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK-------- 527 (745)
Q Consensus 490 ----------------------------------~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~-------- 527 (745)
+++++.++|-++|.++.+++|.+.+++||+++++++++
T Consensus 351 ~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeGivpGGG 430 (550)
T KOG0356|consen 351 GNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEGIVPGGG 430 (550)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcCcccCCc
Confidence 13467788999999999999999999999999999887
Q ss_pred --------------------------------HHH-HHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecc
Q psy16434 528 --------------------------------VFV-KTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAA 574 (745)
Q Consensus 528 --------------------------------~IP-r~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~ 574 (745)
..| .++++|||.|...++.|++. ..+|||...+ ++.|+.
T Consensus 431 ~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~------~~~gyda~~~--ey~dlv 502 (550)
T KOG0356|consen 431 TALLRAIPVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN------DDYGYDAAKG--EYVDLV 502 (550)
T ss_pred hHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh------hhhhhhhhcc--cHHHHH
Confidence 357 89999999999999999983 1789999999 999999
Q ss_pred cccccccccchhhHhhhhhhcchhhcccc
Q psy16434 575 EAGILDLYLTKMWALKYATSAANTILQQT 603 (745)
Q Consensus 575 g~gI~Ds~lVkG~vL~~A~e~a~mil~ID 603 (745)
..|++||..|-..++..|...++++.+.+
T Consensus 503 ~~GiidP~kVvr~al~~a~~vasll~tte 531 (550)
T KOG0356|consen 503 EAGIIDPTKVVRTALTDAAGVASLLTTTE 531 (550)
T ss_pred hccCCChHHHHHHhhhhhhHHHHHHhhhe
Confidence 99999999999999999998888777654
|
|
| >KOG0361|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=279.64 Aligned_cols=275 Identities=20% Similarity=0.239 Sum_probs=246.1
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHHH------
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVFV------ 530 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~IP------ 530 (745)
-||+++.|...++.|+.++|| |++++|+++.+ +.+..++..|. +..|+..++.+..-|++-++.+...|.
T Consensus 72 vhPaaktlVdia~sQDaEVGDGTTSVv~la~E~l-k~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~ 150 (543)
T KOG0361|consen 72 VHPAAKTLVDIARSQDAEVGDGTTSVVLLAAEFL-KEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTE 150 (543)
T ss_pred cChhHHHHHHHHhhccccccCCceeEeeeHHHHH-HhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhh
Confidence 689999999999999999999 99999999998 88888999998 888999999999999999987764222
Q ss_pred -HHHHhhccchhhHHHHHHHHHhhcCCccceeee--------cCCCcceeecccccccccccchhhHhhhhhhcch---h
Q psy16434 531 -KTLAENTGVKSNEVISKLYSAHNEGKKTYGFDI--------NGENSSVIDAAEAGILDLYLTKMWALKYATSAAN---T 598 (745)
Q Consensus 531 -r~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl--------~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~---m 598 (745)
|.|++.+ ..+.+.+|+.......++.+-+|+ ..+.|.|++.+|+.+.||.+|+|+++++.+++++ +
T Consensus 151 ~r~lL~Kc--A~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqq 228 (543)
T KOG0361|consen 151 LRELLEKC--AATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQ 228 (543)
T ss_pred HHHHHHHH--HHHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchhhhccceeeeehccccchhhC
Confidence 5555554 367788888776655555444432 2233699999999999999999999999999886 7
Q ss_pred hcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCC
Q psy16434 599 ILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGL 678 (745)
Q Consensus 599 il~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gI 678 (745)
|+++.||+|++++..||.+..+.++++.+.++++++.+.+.|++.+.+++++|.++|+|||++.-.|.|+|.+||++++|
T Consensus 229 PKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdi 308 (543)
T KOG0361|consen 229 PKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDI 308 (543)
T ss_pred ccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccC------cccccccccc
Q psy16434 679 MGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDR------PAQTCKYLHQ 737 (745)
Q Consensus 679 l~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~------~~~~~~~~~~ 737 (745)
.+..||+.+||.|+..++|++|+++..++.+..||+|..|++. |.|||+ .+++|++|-.
T Consensus 309 FCAGRV~~eDl~Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLR 375 (543)
T KOG0361|consen 309 FCAGRVPEEDLNRVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILR 375 (543)
T ss_pred eecCcCCHHHHHHHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEe
Confidence 9999999999999999999999999999999999999999995 999996 6889998854
|
|
| >TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-30 Score=295.85 Aligned_cols=271 Identities=19% Similarity=0.223 Sum_probs=224.1
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH---H-HH
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF---V-KT 532 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I---P-r~ 532 (745)
+||.++++.+++.-|+.++|| |++++|.++.+ ..+..++-+|. |..|+++++++++.+++.++.....+ . ..
T Consensus 68 ~hP~akll~~~a~~q~~~~GDGTtt~viLa~~Ll-~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~ 146 (525)
T TIGR02344 68 AHPAAKSMIELSRTQDEEVGDGTTSVIILAGEML-SVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAA 146 (525)
T ss_pred CCHHHHHHHHHHHhhhhhccCCcchhHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHH
Confidence 789999999999999999999 88899999988 77777888887 89999999999999999998754311 0 11
Q ss_pred ---HHh---hccch--hhHHHHHHHHHhh-----cC-CccceeeecCCCcceeecccccccccccchhhHhhhhhhcchh
Q psy16434 533 ---LAE---NTGVK--SNEVISKLYSAHN-----EG-KKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANT 598 (745)
Q Consensus 533 ---Lae---NAGld--~~~vlsKL~~~h~-----~g-~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~m 598 (745)
+++ ++... ..+.++++..... ++ ....-+|++. ++++.+++|+.+.|+.+++|+++++.+.+..|
T Consensus 147 l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~-~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m 225 (525)
T TIGR02344 147 MLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKR-YAKVEKIPGGDIEDSCVLKGVMINKDVTHPKM 225 (525)
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhh-ceEEEEecCCChHhcCcccceEEecccCCCCC
Confidence 221 11110 1233333322111 11 0011223221 24788999999999999999999999889999
Q ss_pred hcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCC
Q psy16434 599 ILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGL 678 (745)
Q Consensus 599 il~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gI 678 (745)
+.++.|++|+++++|||+++++.++++.+++++++++++++|++++++++++|.+.||+||+++++|+|++++||.++||
T Consensus 226 ~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I 305 (525)
T TIGR02344 226 RRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANI 305 (525)
T ss_pred ccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcc-cCCceEe--cccccCccccc
Q psy16434 679 MGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSF-CPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 679 l~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~-c~~~~~~--~~e~~~~~~~~ 732 (745)
++++++++++|+|||++|||+++++++++.++.||+ |+.|+++ |.++|.+-+.|
T Consensus 306 ~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~ 362 (525)
T TIGR02344 306 SAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTEC 362 (525)
T ss_pred eEEecCCHHHHHHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcC
Confidence 999999999999999999999999999999999999 9999984 66666554433
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-30 Score=296.40 Aligned_cols=272 Identities=22% Similarity=0.218 Sum_probs=224.4
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++-+++..|++++|| |++++|.++.+ .++..++-+|. |..++++++++++.+++
T Consensus 59 ~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~GDGTtt~viLa~~ll-~~~~~li~~gi~p~~Ii~g~~~a~~~~~~ 137 (526)
T cd03339 59 VTVTNDGATILEKMDVDHQIAKLLVELSKSQDDEIGDGTTGVVVLAGALL-EQAEKLLDRGIHPIRIADGYEQACKIAVE 137 (526)
T ss_pred EEEeCcHHHHHHHhcccCHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4455543333332223789999999999999999999 88888999988 77778888887 89999999999999999
Q ss_pred HHHHHHHHH-----H-HHHHhhccchhhHHHHHHHHHhhcCCccc--------------eeeecCCCcceeecccccccc
Q psy16434 521 TFKGITKVF-----V-KTLAENTGVKSNEVISKLYSAHNEGKKTY--------------GFDINGENSSVIDAAEAGILD 580 (745)
Q Consensus 521 vlk~~~~~I-----P-r~LaeNAGld~~~vlsKL~~~h~~g~~~~--------------GIDl~~~~ikI~dm~g~gI~D 580 (745)
.++.....+ + ..|..-+ .+.+.+|+...+.+.++.+ -+|.+ .+++.+++|+++.|
T Consensus 138 ~L~~~~~~~~~~~~~~~~l~~ia---~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~--~I~i~ki~Ggs~~d 212 (526)
T cd03339 138 HLEEIADKIEFSPDNKEPLIQTA---MTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFE--LIKVEGKVGGRLED 212 (526)
T ss_pred HHHHhccccCCCcccHHHHHHHH---HHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchH--HeEEEEecCcCHHH
Confidence 998765422 1 1121111 1122222222111111111 12322 35999999999999
Q ss_pred cccchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Q psy16434 581 LYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVV 660 (745)
Q Consensus 581 s~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl 660 (745)
+.+++|+++++.+.+..|++++++++|++++++||++++++++++.++++++++++.++|++++++++++|++.|++||+
T Consensus 213 S~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi 292 (526)
T cd03339 213 TKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVI 292 (526)
T ss_pred cceeeeEEEecccCCCCCCceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe
Q psy16434 661 AGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ 721 (745)
Q Consensus 661 ~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~ 721 (745)
++++|+|.|++||.++||++++++++++|+|||++|||+++++++++.++.||+|+.|+++
T Consensus 293 ~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~ 353 (526)
T cd03339 293 CQWGFDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREI 353 (526)
T ss_pred eCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHHHHhCCEEecchhhCChhhcccCceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999985
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >KOG0364|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=270.03 Aligned_cols=288 Identities=19% Similarity=0.202 Sum_probs=234.0
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
|.++|.+.-+.+.-.-.||+++.+.+.++.|++++|| |++++++|+.+ ..+.-++-+|. +-.+++++.++++|++.
T Consensus 55 i~~tndg~ailrei~Vahpaaksmiel~rtqdeevgdgttsvi~lagE~L-~~~~~~l~~~~Hp~~i~ka~~~aled~~~ 133 (527)
T KOG0364|consen 55 IVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEML-NVAEPFLEEGIHPTVIIKAYIKALEDNIR 133 (527)
T ss_pred eEEecCcHHHHHHHhhcCcchhhHhhhhhcccccccCCceeeeeehHHHh-hhcchhhhcCcchHHHHHHHHHHHHHHHH
Confidence 3344433333333233789999999999999999999 99999999998 55555888887 89999999999999999
Q ss_pred HHHHHHHHHH-HHHHhhccchhhHHHHHHHHHhhcCCccc--------------eeeecCCCcceeecccccccccccch
Q psy16434 521 TFKGITKVFV-KTLAENTGVKSNEVISKLYSAHNEGKKTY--------------GFDINGENSSVIDAAEAGILDLYLTK 585 (745)
Q Consensus 521 vlk~~~~~IP-r~LaeNAGld~~~vlsKL~~~h~~g~~~~--------------GIDl~~~~ikI~dm~g~gI~Ds~lVk 585 (745)
+++.+...+. ..-++-.++-...+-+|+.+.|++....+ -+|+.+. .++.+.+++.+.||++++
T Consensus 134 ~~~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y-~kveKvpgg~l~~s~vl~ 212 (527)
T KOG0364|consen 134 ALDKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRY-AKVEKVPGGLLEDSCVLK 212 (527)
T ss_pred HHHhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhh-ccccccCcccccccceec
Confidence 9985543110 00000000111223333333333221111 2344332 488899999999999999
Q ss_pred hhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcc
Q psy16434 586 MWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKF 665 (745)
Q Consensus 586 G~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I 665 (745)
|..+++.+.|..|-..|.+|++.+++|||||.+.+.+..+.+...+++...++-|+++++.++..|+...||||++++|+
T Consensus 213 Gv~~nkdv~Hpkmrr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~ 292 (527)
T KOG0364|consen 213 GVMINKDVTHPKMRRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGV 292 (527)
T ss_pred ceeeccccCcHHHHHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcc-cCCceEe--cccccCcccccc
Q psy16434 666 GDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSF-CPAPPVQ--GRERDRPAQTCK 733 (745)
Q Consensus 666 ~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~-c~~~~~~--~~e~~~~~~~~~ 733 (745)
+|+|+|||.++||+++||+.+.|..|++++|||+++++.+++.+.+.|+ |+.|+++ |+|+|+|-..|+
T Consensus 293 sdla~hyl~k~~iT~~rr~rKtDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck 363 (527)
T KOG0364|consen 293 SDLAQHYLLKANITAIRRLRKTDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCK 363 (527)
T ss_pred hHHHHHHHHhcCchhhhhhhccccchhhhhcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcC
Confidence 9999999999999999999999999999999999999999999999998 9999996 999998665554
|
|
| >TIGR02339 thermosome_arch thermosome, various subunits, archaeal | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-29 Score=289.32 Aligned_cols=287 Identities=23% Similarity=0.322 Sum_probs=231.6
Q ss_pred eEEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHH
Q psy16434 443 KIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGV 519 (745)
Q Consensus 443 kIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL 519 (745)
++.+++..-...+.-.-+||.++++.++...|++++|| |++++|.++.+ ..+..++-+|. |..++++++++++.++
T Consensus 51 ~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~qd~~~GDGTtt~viL~~~ll-~~~~~li~~gi~p~~Ii~g~~~a~~~~~ 129 (519)
T TIGR02339 51 DVTITNDGATILKEMDIEHPAAKMLVEVAKTQDAEVGDGTTTAVVLAGELL-EKAEDLLEQGIHPTVIIEGYRKAAEKAL 129 (519)
T ss_pred CEEEEccHHHHHHhccCCCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 34555544333332223789999999999999999999 88888899887 77778888887 8899999999999999
Q ss_pred HHHHHHHHHHH-------HHHHhhc---cc---hhhHHHHHHHHHh----hc--CCccceeeecCCCcceeecccccccc
Q psy16434 520 NTFKGITKVFV-------KTLAENT---GV---KSNEVISKLYSAH----NE--GKKTYGFDINGENSSVIDAAEAGILD 580 (745)
Q Consensus 520 ~vlk~~~~~IP-------r~LaeNA---Gl---d~~~vlsKL~~~h----~~--g~~~~GIDl~~~~ikI~dm~g~gI~D 580 (745)
..++.....+. ..++..+ -. ...+.++++.... .+ ....+-+|++. +++.+..|+++.|
T Consensus 130 ~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~--I~i~k~~Ggs~~d 207 (519)
T TIGR02339 130 EIIDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDN--IKIEKKTGGSIDD 207 (519)
T ss_pred HHHHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHH--eEEEEccCcChhc
Confidence 99987653210 1122211 00 0112333332110 00 01111234433 4889999999999
Q ss_pred cccchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Q psy16434 581 LYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVV 660 (745)
Q Consensus 581 s~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl 660 (745)
+.+++|+++++...+..|+.+++|++|++++++||++++++++++.+++++++++++++|+++++++|++|++.|++||+
T Consensus 208 s~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi 287 (519)
T TIGR02339 208 TELVEGIVVDKEPVHPGMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVF 287 (519)
T ss_pred ceeEeeEEEecCCCCCCCccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 661 AGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 661 ~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
++++|+|.|++||.++||++++++++++|+|||++|||+++++++++.++.||+|+.|+++ |.++|.+-+.|
T Consensus 288 ~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~ 361 (519)
T TIGR02339 288 CQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGC 361 (519)
T ss_pred ECCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999996 67777654443
|
Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs. |
| >TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-30 Score=295.40 Aligned_cols=272 Identities=23% Similarity=0.229 Sum_probs=224.5
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++.++++.|+.++|| |++++|.++.+ ..+..++-+|. |..|+++++.+++.+++
T Consensus 63 ~~ITnDG~tIlk~l~~~hP~akll~~~a~~qd~~~GDGTttvvvLa~~Ll-~~a~~li~~gihp~~Ii~g~~~a~~~~~~ 141 (532)
T TIGR02343 63 ITVTNDGATILSQMDVDNPIAKLMVELSKSQDDEIGDGTTGVVVLAGALL-EQAEALLDKGIHPIKIAEGFEVAARVAVE 141 (532)
T ss_pred EEEeCcHHHHHHHccCCCHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 4555544333332223789999999999999999999 88888999988 77888888897 88999999999999999
Q ss_pred HHHHHHHHHH------HHHHhhccchhhHHHHHHHHHhhcCCccc--------------eeeecCCCcceeecccccccc
Q psy16434 521 TFKGITKVFV------KTLAENTGVKSNEVISKLYSAHNEGKKTY--------------GFDINGENSSVIDAAEAGILD 580 (745)
Q Consensus 521 vlk~~~~~IP------r~LaeNAGld~~~vlsKL~~~h~~g~~~~--------------GIDl~~~~ikI~dm~g~gI~D 580 (745)
.++.....++ ..|..- ..+.+.+|+.+.+.+.++.+ -+|++ .+++.++.|+++.|
T Consensus 142 ~L~~~~~~~~~~~~~~~~l~~i---a~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~--~I~i~ki~Ggs~~d 216 (532)
T TIGR02343 142 HLEEISEEISDDNNNKEPLIQA---AKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFD--LIKVEGKVGGSLED 216 (532)
T ss_pred HHHHhccccCcCCCCHHHHHHH---HHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHH--HeeEEEecCCCccc
Confidence 9987654220 111111 01122222222111111111 12333 35999999999999
Q ss_pred cccchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Q psy16434 581 LYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVV 660 (745)
Q Consensus 581 s~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl 660 (745)
+.+++|+++++...+..|++++++++|++++++||++++++++++.+++++++++|.++|++++++++++|++.|++||+
T Consensus 217 s~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi 296 (532)
T TIGR02343 217 TKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVI 296 (532)
T ss_pred ceeEeeEEEecCcCCCCCCeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe
Q psy16434 661 AGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ 721 (745)
Q Consensus 661 ~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~ 721 (745)
++++|+|.|++||.++||++++++++++|+|||++|||+++++++++.++.||+|+.|+++
T Consensus 297 ~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~ 357 (532)
T TIGR02343 297 CQWGFDDEANHLLLQNDLPAVRWVGGHELELIAIATGGRIVPRFEELSEDKLGKAGLVREI 357 (532)
T ss_pred eCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHHHHhCCEEecccccCCHhHCcccceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999985
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >PTZ00212 T-complex protein 1 subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-30 Score=292.79 Aligned_cols=282 Identities=17% Similarity=0.208 Sum_probs=229.4
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++-+++.-|++++|| |++++|.++.+ ..+..++-+|. |..|+++++++++.+++
T Consensus 63 ~~iTnDG~TIlk~i~~~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll-~~a~~li~~gi~p~~Ii~g~~~a~~~~~~ 141 (533)
T PTZ00212 63 VTVTNDGATILKSVWLDNPAAKILVDISKTQDEEVGDGTTSVVVLAGELL-REAEKLLDQKIHPQTIIEGWRMALDVARK 141 (533)
T ss_pred EEEeccHHHHHHhccCcCHHHHHHHHHHHhhhhhhCCchhHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4555543333332223789999999999999999999 88889999988 77777888887 89999999999999999
Q ss_pred HHHHHHHHH-------HHHHHhhccchhhHHHHHHHHHhhcCCccc----------eeeecCCCcceeeccccccccccc
Q psy16434 521 TFKGITKVF-------VKTLAENTGVKSNEVISKLYSAHNEGKKTY----------GFDINGENSSVIDAAEAGILDLYL 583 (745)
Q Consensus 521 vlk~~~~~I-------Pr~LaeNAGld~~~vlsKL~~~h~~g~~~~----------GIDl~~~~ikI~dm~g~gI~Ds~l 583 (745)
.++.....+ ...|..- ..+.+.+|+.+.+.+.++.+ ++|.+ ++++.++.|+++.|+++
T Consensus 142 ~L~~~s~~~~~~~~~~~~~l~~v---a~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~--~I~i~ki~Ggsi~ds~l 216 (533)
T PTZ00212 142 ALEEIAFDHGSDEEKFKEDLLNI---ARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLD--YIQIIKKPGGTLRDSYL 216 (533)
T ss_pred HHHHhCcCCCccchhhHHHHHHH---HHHHhcccccchhHHHHHHHHHHHHHHHhccCCcc--ceEEEEecCcCccccEE
Confidence 997754311 1112111 12233334333322222222 22333 34899999999999999
Q ss_pred chhhHhhhhhhcchhhcccccceeeeeccCcccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeC
Q psy16434 584 TKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTET-KGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~-~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~ 662 (745)
++|+++++.+.+ .|+.+++|++|+++++|||++++++ ++++.+++++++..+.++|++++++++++|++.|+++|+++
T Consensus 217 v~G~v~~~~~~~-~~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~ 295 (533)
T PTZ00212 217 EDGFILEKKIGV-GQPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINR 295 (533)
T ss_pred EEeEEEecccCC-CCCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeC
Confidence 999999987655 5899999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 663 ~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
++|+|.+++||.++||++++|+++++++|||++|||+++++++++.+++||+|+.|++. |+++|.+...|
T Consensus 296 ~~I~d~a~~~L~~~~I~avr~v~~~~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~ 367 (533)
T PTZ00212 296 QLIYNYPEQLFAEAGIMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGC 367 (533)
T ss_pred CCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999975 67777655444
|
|
| >cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-29 Score=289.73 Aligned_cols=283 Identities=16% Similarity=0.187 Sum_probs=228.5
Q ss_pred eEEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHH
Q psy16434 443 KIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGV 519 (745)
Q Consensus 443 kIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL 519 (745)
++.++|..-...+.-.-+||.++++.+++..|++++|| |++++|+|+.+ ..+..++-+|. |..++++++++.+.++
T Consensus 50 ~~~iTnDG~tIlk~l~~~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll-~~a~~li~~gi~p~~I~~g~~~a~~~~~ 128 (517)
T cd03336 50 GVTVTNDGATILKSIGVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELL-REAEKLVAQKIHPQTIIEGYRMATAAAR 128 (517)
T ss_pred CeEEeccHHHHHHHccCcChHHHHHHHHHHHHHhHhCCChhHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34555544333332223789999999999999999999 88899999988 77778888887 8999999999999999
Q ss_pred HHHHHHHHHH-----H--HHHHhhccchhhHHHHHHHHHhhcCCc--------cc--eeeecCCCcceeecccccccccc
Q psy16434 520 NTFKGITKVF-----V--KTLAENTGVKSNEVISKLYSAHNEGKK--------TY--GFDINGENSSVIDAAEAGILDLY 582 (745)
Q Consensus 520 ~vlk~~~~~I-----P--r~LaeNAGld~~~vlsKL~~~h~~g~~--------~~--GIDl~~~~ikI~dm~g~gI~Ds~ 582 (745)
+.++.....+ + ..|..-+ .+.+.+|+.+.+.+..+ .+ ++|.+ ++++.++.|+++.|++
T Consensus 129 ~~L~~~~~~~~~~~~~~~~~l~~ia---~t~lssk~~~~~~~~l~~l~~~A~~~v~~~~~~~--~i~i~ki~G~s~~ds~ 203 (517)
T cd03336 129 EALLSSAVDHSSDEEAFREDLLNIA---RTTLSSKILTQDKEHFAELAVDAVLRLKGSGNLD--AIQIIKKLGGSLKDSY 203 (517)
T ss_pred HHHHHhccCcccccchhHHHHHHHH---HhhccccccchhHHHHHHHHHHHHHHhhccCCcc--ceeEEEccCCCccceE
Confidence 9997754311 0 1111111 11222222111111111 01 33443 3599999999999999
Q ss_pred cchhhHhhhhhhcchhhcccccceeeeeccCcccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEe
Q psy16434 583 LTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTET-KGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVA 661 (745)
Q Consensus 583 lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~-~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~ 661 (745)
+++|+++++...+ .|+++++|++|+++++|||++++++ ++++.++++++++.+.+.|++++++++++|++.|+++|++
T Consensus 204 l~~G~v~~~~~~~-~~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~ 282 (517)
T cd03336 204 LDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFIN 282 (517)
T ss_pred EEeeEEEecccCC-CCCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEe
Confidence 9999999987654 4799999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 662 GAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 662 ~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
+++|+|.+++||.++||++++++++++|+|||++|||+++++++++.+++||+|+.|++. |.++|.+-..|
T Consensus 283 ~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~ 355 (517)
T cd03336 283 RQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGV 355 (517)
T ss_pred CCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecccCCCCcccccccceEEEEEECCeEEEEEEcc
Confidence 999999999999999999999999999999999999999999999999999999999985 78888665443
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >cd03343 cpn60 cpn60 chaperonin family | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-29 Score=286.75 Aligned_cols=286 Identities=22% Similarity=0.289 Sum_probs=230.3
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++.++..-|+.++|| |++++|.++.+ ..+..++-.|. +..++++++++.+.+++
T Consensus 51 ~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GDGTtt~viLa~~ll-~~~~~li~~gi~p~~I~~g~~~a~~~~~~ 129 (517)
T cd03343 51 VTITNDGATILKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELL-EKAEDLLDQNIHPTVIIEGYRLAAEKALE 129 (517)
T ss_pred EEEEccHHHHHHHccCcCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH-HHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 4555544333333233789999999999999999999 88888888877 66667777786 88899999999999999
Q ss_pred HHHHHHHHHH-------HHHHhhc-c-c---hhhHHHHHHHHHh-----hcCCccceeeecCCCcceeeccccccccccc
Q psy16434 521 TFKGITKVFV-------KTLAENT-G-V---KSNEVISKLYSAH-----NEGKKTYGFDINGENSSVIDAAEAGILDLYL 583 (745)
Q Consensus 521 vlk~~~~~IP-------r~LaeNA-G-l---d~~~vlsKL~~~h-----~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~l 583 (745)
.++.....+. ..++..+ + . ...+.++++.... ..+....-+|.+ ++++.+..|+++.|+.+
T Consensus 130 ~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~--~I~i~k~~Ggs~~ds~l 207 (517)
T cd03343 130 LLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLD--NIKIEKKTGGSVDDTEL 207 (517)
T ss_pred HHHHhhcccCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHH--HeeEEeecCcCHHHcce
Confidence 9987654221 1122111 0 0 0112223321110 111000123433 35899999999999999
Q ss_pred chhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCC
Q psy16434 584 TKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGA 663 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~ 663 (745)
++|+++++...+..|+..++|++|++++++||++++++++++.++++++++++.++|++++++++++|++.|++||++++
T Consensus 208 v~G~v~~~~~~~~~m~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~ 287 (517)
T cd03343 208 IRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQK 287 (517)
T ss_pred eeeEEEeccCCCCCCccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 664 KFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 664 ~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
+|++.|++||.++||++++++++++|+|||++|||+++++++++..+.||+|+.|+++ |+++|.+-+.|
T Consensus 288 ~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~ 358 (517)
T cd03343 288 GIDDLAQHYLAKAGILAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGC 358 (517)
T ss_pred CccHHHHHHHhHCCcEEEEeCCHHHHHHHHHHhCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999986 67777665444
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. |
| >TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-29 Score=288.55 Aligned_cols=286 Identities=15% Similarity=0.159 Sum_probs=229.3
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++.+++..|++++|| |++++|+++.+ .++..++-+|. |..++++++++++.+++
T Consensus 52 ~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~qd~~~GDGTTtvvvLa~~Ll-~~a~~li~~gihp~~Ii~g~~~a~~~~~~ 130 (531)
T TIGR02347 52 IKLTKDGNVLLNEMQIQHPTASMIARAATAQDDITGDGTTSTVILIGELL-KQAERYILEGIHPRILTEGFEIARGELLE 130 (531)
T ss_pred EEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCcHHHHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 4455544333333233789999999999999999999 88999999988 77888888897 88999999999999999
Q ss_pred HHHHHHHHHH--------HHHHhhcc---c--hhhHHHHHHHHHhhc--CCccceeeecCCCcceeecccccccccccch
Q psy16434 521 TFKGITKVFV--------KTLAENTG---V--KSNEVISKLYSAHNE--GKKTYGFDINGENSSVIDAAEAGILDLYLTK 585 (745)
Q Consensus 521 vlk~~~~~IP--------r~LaeNAG---l--d~~~vlsKL~~~h~~--g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVk 585 (745)
.++.....+| ..++..+- . ...+.++++....-. +....-+|+++ +++.+..|+++.|+.+++
T Consensus 131 ~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~--I~i~k~~g~s~~ds~~v~ 208 (531)
T TIGR02347 131 FLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFM--VEIMEMKHKSATDTTLIR 208 (531)
T ss_pred HHHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhcCCCCChhH--eEEEEecCCCccccEEEe
Confidence 9987652111 11111110 0 012222332111000 00000134333 378889999999999999
Q ss_pred hhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcC-------Cc-
Q psy16434 586 MWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTG-------AN- 657 (745)
Q Consensus 586 G~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~g-------vn- 657 (745)
|+++++...+..|+++++|++|+++++|||+.+++.++.+.++++++++.+.+.|++++++++++|+++| ++
T Consensus 209 Giv~~~~~~~~~~~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~ 288 (531)
T TIGR02347 209 GLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDK 288 (531)
T ss_pred eEEEecCcCCCCCceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCc
Confidence 9999999888899999999999999999999999999999999999999999999999999999999987 26
Q ss_pred --EEEeCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 658 --VVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 658 --VVl~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
||+++++|+|.++|||.++||++++|+++++|+|||++|||+++++++++.+++||+|+.|+++ |.++|.+-+.|
T Consensus 289 ~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~ 367 (531)
T TIGR02347 289 GFVVINQKGIDPPSLDLLAKEGIMALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEV 367 (531)
T ss_pred cEEEEeCCCccHHHHHHHHHCCceEEccCCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999999886 78888665444
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >KOG0362|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-28 Score=266.31 Aligned_cols=285 Identities=33% Similarity=0.477 Sum_probs=233.7
Q ss_pred ceEEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHH
Q psy16434 442 AKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDG 518 (745)
Q Consensus 442 akIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DA 518 (745)
-++++++++=-+-+.-.-+||+++.|..|...|+.++|| +-+++|+|+++ ..+..+|-.|. +..+.+.++.+...+
T Consensus 60 ~k~~~TndaatIlrelev~HPaakllv~a~~~q~~~iGDgtnfvvvla~~LL-e~Ae~li~~Gl~~~ei~~gy~~A~~~~ 138 (537)
T KOG0362|consen 60 GKTFVTNDAATILRELEVEHPAAKLLVEATQMQEEEIGDGTNFVVVLAGALL-EQAEELIRMGLTPAEISEGYETATKEA 138 (537)
T ss_pred ceEEEcCChHHHHHHhhccCcHHHHHHHHHHHHHHhhCCCceEeehhHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 356677765333332223899999999999999999999 77788899988 77888888887 888999999999999
Q ss_pred HHHHHHHHH-HH-----H----HHHHhhccchhhHHHHHHHHHhhc--CCccceeeecCCCcceeecccccccccccchh
Q psy16434 519 VNTFKGITK-VF-----V----KTLAENTGVKSNEVISKLYSAHNE--GKKTYGFDINGENSSVIDAAEAGILDLYLTKM 586 (745)
Q Consensus 519 L~vlk~~~~-~I-----P----r~LaeNAGld~~~vlsKL~~~h~~--g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG 586 (745)
+..+.+.+. ++ + +.....--+...+.+.++.....- ... -+++.+ +++++++.++++.+|+++.|
T Consensus 139 ~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~-~~Fnvd--nIrVcKi~Gg~l~~S~Vv~G 215 (537)
T KOG0362|consen 139 LEILPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLVAKACVSILPL-MSFNVD--NIRVCKILGGGLEDSCVVCG 215 (537)
T ss_pred HHHhHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccc-cccccc--ceEEEEEecCCcccceeeEE
Confidence 999998775 10 0 111111112344555555443211 111 124444 45999999999999999999
Q ss_pred hHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCccc
Q psy16434 587 WALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFG 666 (745)
Q Consensus 587 ~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~ 666 (745)
.+++.-++ +.+++-.+.++++++||++...+|+++++.+++++++.+|.+.|+..++.+|+.|.+.|++||++.+.|+
T Consensus 216 mVfkr~~e--G~v~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~ 293 (537)
T KOG0362|consen 216 MVFKRDPE--GEVKSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVD 293 (537)
T ss_pred EEeccccC--CcccccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccc
Confidence 99996544 5568889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccC-ccccc
Q psy16434 667 DMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDR-PAQTC 732 (745)
Q Consensus 667 d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~-~~~~~ 732 (745)
++++|||++++||++|..+++||+||||..||++++++..+..+.||+|.+++.+ |++.++ |.+.|
T Consensus 294 em~Lhflnky~ImVlqi~Sk~eLrrlcrtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~ 362 (537)
T KOG0362|consen 294 EMTLHFLNKYKIMVLQINSKFDLRRLCRTVGATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWES 362 (537)
T ss_pred hhhhhhhccccEEEEEeccHhhHHHHHHHcCCccchhccCCCCccccccceeeeeecCCceEEEEeecc
Confidence 9999999999999999999999999999999999999999999999999999885 777775 55555
|
|
| >KOG0359|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-29 Score=269.30 Aligned_cols=269 Identities=15% Similarity=0.197 Sum_probs=231.9
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVFV-KTLAE 535 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~IP-r~Lae 535 (745)
.||++..+.++...|++..|| ++++++.|+.+ +.+...+..|. +..|.++++-+.++++..++..-..+. .+|.+
T Consensus 69 qhPTa~lIakaatAqdd~tGDGttS~VlligEll-kqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~~~~L~~ 147 (520)
T KOG0359|consen 69 QHPTASLIAKVATAQDDITGDGTTSVVLLIGELL-KQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVDRETLKD 147 (520)
T ss_pred cCchHHHHHHHHHHhhcccCCCcceEEEeeHHHH-HHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchhHHHHHH
Confidence 789999999999999999999 89999999988 78888888887 999999999999999999984322222 22322
Q ss_pred hccchhhHHHHHHHHHhhcCC-------------ccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhccc
Q psy16434 536 NTGVKSNEVISKLYSAHNEGK-------------KTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQ 602 (745)
Q Consensus 536 NAGld~~~vlsKL~~~h~~g~-------------~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~I 602 (745)
- ..+.+.+|+...-++-. ..-.+|+.+- ++..|...+..|..+++|.++++...|..|++++
T Consensus 148 v---a~tsl~Tkv~~~la~~lt~~vv~aVl~i~~~~~~idl~mv--eim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~ 222 (520)
T KOG0359|consen 148 V---ARTSLRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMV--EIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRV 222 (520)
T ss_pred H---HHHhhcCcccHHHHhHhHHHHHhhheeeccCCCCcchhHH--HhhhhccCchhhhHHhhhhhccCCCCCcccccch
Confidence 1 13333333322211110 1112455544 8899999999999999999999999999999999
Q ss_pred ccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCc----EEEeCCcccHHHHHHHHHcCC
Q psy16434 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGAN----VVVAGAKFGDMALHYLNKYGL 678 (745)
Q Consensus 603 Dn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvn----VVl~~~~I~d~al~~L~k~gI 678 (745)
.|+-|+++|.+|||+|+|.++.+.++++++.+.+...|++++++.+++|++++-. ||++|+|||+..++.|+++||
T Consensus 223 e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gI 302 (520)
T KOG0359|consen 223 EDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGI 302 (520)
T ss_pred hceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcch
Confidence 9999999999999999999999999999999999999999999999999999854 799999999999999999999
Q ss_pred eEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccccc
Q psy16434 679 MGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTCKY 734 (745)
Q Consensus 679 l~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~~~ 734 (745)
+++||.++..|||+..+||+..++++|+++++.||+|+.+++. |+|||||.+.|++
T Consensus 303 laLRRAKRRNmERL~lacGG~a~nsvddLtp~~LG~aglVye~tlGEEkfTFIE~~~~ 360 (520)
T KOG0359|consen 303 LALRRAKRRNMERLVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNN 360 (520)
T ss_pred HHHHHHhhhhHHHHHHhhccceecccccCChhhccccceeEEeeccceeeEeeecCCC
Confidence 9999999999999999999999999999999999999999997 9999999998874
|
|
| >cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-29 Score=285.49 Aligned_cols=290 Identities=19% Similarity=0.229 Sum_probs=230.1
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++.++.+.|+.++|| |++++|.++.+ ..+..++-+|. |..++++++++++.+++
T Consensus 52 ~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~GDGTtt~viL~~~ll-~~~~~li~~gi~p~~Ii~g~~~a~~~~~~ 130 (522)
T cd03340 52 VTISNDGATILKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVVLAGEFL-KEAKPFIEDGVHPQIIIRGYRKALQLAIE 130 (522)
T ss_pred EEEeccHHHHHHHccccCHHHHHHHHHHHHhHhHhCCChhHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4555544333332223789999999999999999999 88889999988 77777777887 99999999999999999
Q ss_pred HHHHHHHHHH-------HHHHhhccchhhHHHHHHHHHhhcCCc--------cceeeecCCCcceeecccccccccccch
Q psy16434 521 TFKGITKVFV-------KTLAENTGVKSNEVISKLYSAHNEGKK--------TYGFDINGENSSVIDAAEAGILDLYLTK 585 (745)
Q Consensus 521 vlk~~~~~IP-------r~LaeNAGld~~~vlsKL~~~h~~g~~--------~~GIDl~~~~ikI~dm~g~gI~Ds~lVk 585 (745)
.++.....+. +....+. ..+.+.+|+.+.+.+..+ .++-+.+.+.+++.++.|+++.|+++++
T Consensus 131 ~L~~~s~~~~~~~~~~~~~~l~~i--a~t~l~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds~lv~ 208 (522)
T cd03340 131 KIKEIAVNIDKEDKEEQRELLEKC--AATALNSKLIASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDSQLVN 208 (522)
T ss_pred HHHHhhcccCcccccccHHHHHHH--HHHHhccCcchhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhhceeee
Confidence 9977543110 1111111 011222222211111111 1121222234589999999999999999
Q ss_pred hhHhhhhhhcc---hhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeC
Q psy16434 586 MWALKYATSAA---NTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662 (745)
Q Consensus 586 G~vL~~A~e~a---~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~ 662 (745)
|+++++...+. .|++++++|+|+++++|||+++++.++++.++++.+++++.++|++++.+++++|+++|+|||+++
T Consensus 209 Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~ 288 (522)
T cd03340 209 GVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSK 288 (522)
T ss_pred eEEEecccCccccccCCccccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence 99999877744 468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCc------cccccc
Q psy16434 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRP------AQTCKY 734 (745)
Q Consensus 663 ~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~------~~~~~~ 734 (745)
++|+|.+++||.++||+++++++++||+|||++|||+++++++++.++.||+|+.|+++ |+++|.+ .+.|++
T Consensus 289 ~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI 368 (522)
T cd03340 289 LPIGDLATQYFADRDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKAKTCTI 368 (522)
T ss_pred CCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEeeccccCCccccccceEEEEEEECCEEEEEEECCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999974 7778854 455566
Q ss_pred cc
Q psy16434 735 LH 736 (745)
Q Consensus 735 ~~ 736 (745)
|.
T Consensus 369 ll 370 (522)
T cd03340 369 IL 370 (522)
T ss_pred EE
Confidence 54
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-28 Score=282.14 Aligned_cols=286 Identities=18% Similarity=0.193 Sum_probs=230.5
Q ss_pred eEEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHH
Q psy16434 443 KIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGV 519 (745)
Q Consensus 443 kIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL 519 (745)
++.+++..-...+.-.-+||.++++-++++.|+.++|| |++++|.|+.+ ..+..++-.|. |..++++++++.+.++
T Consensus 51 ~~~iTnDG~tIlk~l~i~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll-~~a~~li~~gihp~~Ii~g~~~a~~~~~ 129 (519)
T TIGR02341 51 GIMVTNDGATILKSIGVDNPAAKVLVDMSKVQDDEVGDGTTSVTVLAAELL-REAEKLVNQKIHPQTIISGYRRATKAAQ 129 (519)
T ss_pred CeEEeccHHHHHHHccCcChHHHHHHHHHHHhHhhhCCchhHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34455543233332223789999999999999999999 88899999988 77778888887 9999999999999999
Q ss_pred HHHHHHHHHH--H----HHHHhhccchhhHHHHHHHHHhhcCCccceeee--------cCCCcceeecccccccccccch
Q psy16434 520 NTFKGITKVF--V----KTLAENTGVKSNEVISKLYSAHNEGKKTYGFDI--------NGENSSVIDAAEAGILDLYLTK 585 (745)
Q Consensus 520 ~vlk~~~~~I--P----r~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl--------~~~~ikI~dm~g~gI~Ds~lVk 585 (745)
+.++.....+ . +....+. ..+.+.+|+...+.+.++.+++|. +.+++++.++.|+++.|+++++
T Consensus 130 ~~L~~~~~~~~~~~~~~~~~L~~i--a~t~l~ski~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s~l~~ 207 (519)
T TIGR02341 130 EALKKSSIDNGSDKTKFRDDLLNI--ARTTLSSKILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDSYLDE 207 (519)
T ss_pred HHHHHhcccccCcccccHHHHHHH--HHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcccceEEe
Confidence 9997754311 0 1111111 123334444433333222222211 1123588899999999999999
Q ss_pred hhHhhhhhhcchhhcccccceeeeeccCcccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCc
Q psy16434 586 MWALKYATSAANTILQQTKAKIAVYTCPVDIATTET-KGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAK 664 (745)
Q Consensus 586 G~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~-~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~ 664 (745)
|+++++.+.+ .|+++++|++|+++++|||++++++ ++++.+++++++..+.+.|+++++++++.|++.|+|+++++++
T Consensus 208 G~v~~~~~~~-~~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~ 286 (519)
T TIGR02341 208 GFLLEKKIGV-NQPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQL 286 (519)
T ss_pred eEEEeccCCC-CCceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCc
Confidence 9999987655 5789999999999999999999997 8999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 665 FGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 665 I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
|+|.++|||.++||++++++++++|+|||++|||+++++++++.+++||+|+.|++. |.++|.+-..|
T Consensus 287 I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~ 356 (519)
T TIGR02341 287 IYNYPEQLFADAGVMAIEHADFEGIERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGV 356 (519)
T ss_pred CCHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecccccCCccccccCceEEEEEECCEEEEEEEcC
Confidence 999999999999999999999999999999999999999999999999999999986 78888655433
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-28 Score=279.18 Aligned_cols=287 Identities=22% Similarity=0.258 Sum_probs=228.7
Q ss_pred eEEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHH
Q psy16434 443 KIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGV 519 (745)
Q Consensus 443 kIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL 519 (745)
++.+++..-...+.-.-+||.++++.++++-|++++|| |++++|.++.+ ..+..++-.|. |..++++++++++.++
T Consensus 43 ~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDGTTt~vvLa~~ll-~~~~~li~~gi~p~~Ii~g~~~a~~~~~ 121 (527)
T cd03335 43 DVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDGTTSVVIIAAELL-KRANELVKQKIHPTTIISGYRLACKEAV 121 (527)
T ss_pred CEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCCcchHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34555544333333333789999999999999999999 88889999988 77777788887 8899999999999999
Q ss_pred HHHHH-HHHHH----H---HHHHhhc---cc--hhhHHHHHHHHHhh------cCCccceeeecCCCcceeecccccccc
Q psy16434 520 NTFKG-ITKVF----V---KTLAENT---GV--KSNEVISKLYSAHN------EGKKTYGFDINGENSSVIDAAEAGILD 580 (745)
Q Consensus 520 ~vlk~-~~~~I----P---r~LaeNA---Gl--d~~~vlsKL~~~h~------~g~~~~GIDl~~~~ikI~dm~g~gI~D 580 (745)
+.++. ....+ . ..++..+ -. .....++++..... +.....-+|++. +++.+..|+++.|
T Consensus 122 ~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~--I~i~~~~Ggs~~~ 199 (527)
T cd03335 122 KYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKA--VNILKAHGKSAKE 199 (527)
T ss_pred HHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHH--eEEEEecCcChhh
Confidence 99985 43211 1 1122211 00 01123333321110 000111144443 4889999999999
Q ss_pred cccchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Q psy16434 581 LYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVV 660 (745)
Q Consensus 581 s~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl 660 (745)
+.+++|+++++...+..|+++++|++|+++++||++.+++.++++.++++++++.+.++|++++++++++|+++|++||+
T Consensus 200 s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi 279 (527)
T cd03335 200 SYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVL 279 (527)
T ss_pred cceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCC------CCCCcccCCceEe--cccccCccccc
Q psy16434 661 AGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTY------IKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 661 ~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~------~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
++++|+|.|++||.++||++++|+++++|+|||++|||+++++++++. ++.||+|+.|+++ +.++|.+-+.|
T Consensus 280 ~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~ 359 (527)
T cd03335 280 TTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGT 359 (527)
T ss_pred eCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcC
Confidence 999999999999999999999999999999999999999999997653 3479999999986 67777654433
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >KOG0358|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-28 Score=255.56 Aligned_cols=292 Identities=17% Similarity=0.225 Sum_probs=248.9
Q ss_pred ceEEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHH
Q psy16434 442 AKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDG 518 (745)
Q Consensus 442 akIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DA 518 (745)
..+.+.|..-.+-|...--||.+++|...+..|+.+-|| |++++++|+.+ .....++-+|. |..|.+.++++...+
T Consensus 60 gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDGTTsVVilaGaLL-~~~~~LL~kgiHPtvIsdsfq~a~~~~ 138 (534)
T KOG0358|consen 60 GEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDGTTSVVILAGALL-EAAEKLLQKGIHPTVISDSFQSAAKKA 138 (534)
T ss_pred CcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCCceEEEEehhhHH-HHHHHHHhcCCCchhhhHHHHHHHHHH
Confidence 345565544333333223789999999999999999999 99999999988 66677889998 999999999999999
Q ss_pred HHHHHHHHHHH----HHHHHhhccchhhHHHHHHHHHhhcCCccce---------------eeecCCCcceeeccccccc
Q psy16434 519 VNTFKGITKVF----VKTLAENTGVKSNEVISKLYSAHNEGKKTYG---------------FDINGENSSVIDAAEAGIL 579 (745)
Q Consensus 519 L~vlk~~~~~I----Pr~LaeNAGld~~~vlsKL~~~h~~g~~~~G---------------IDl~~~~ikI~dm~g~gI~ 579 (745)
+..+......+ -..|..+| .+++.+|+.++++.....+. +|++ ++++.+..|+.+.
T Consensus 139 v~il~~m~~~velsdre~Li~~a---tTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlk--dIkivkklGgtvd 213 (534)
T KOG0358|consen 139 VDILDEMSVPVELSDRESLIKSA---TTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLK--DIKIVKKLGGTVD 213 (534)
T ss_pred HHHHHhcCCCcccCcHHHHHHHH---HhHhhHHHHHhhccccchHHHHHHHhccCcccccccchh--hhhhHHhhCCccc
Confidence 99998865422 14466665 78899999988875544333 3333 3589999999999
Q ss_pred ccccchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEE
Q psy16434 580 DLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVV 659 (745)
Q Consensus 580 Ds~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVV 659 (745)
|+.+++|.++.+...-..-+.+++.++|.+++|.+.++|+++..++.++++.+|+.++++|++|+.+++++|++.|+||+
T Consensus 214 Dte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvL 293 (534)
T KOG0358|consen 214 DTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVL 293 (534)
T ss_pred hhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEE
Confidence 99999999998777776689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCcc-----cHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe---ccccc-----
Q psy16434 660 VAGAKF-----GDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ---GRERD----- 726 (745)
Q Consensus 660 l~~~~I-----~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~---~~e~~----- 726 (745)
+.|++| +|+|+|||.+.+||+++-+.++|+|.+|+.+|..++.++|.++++.||++..+++- |+-|+
T Consensus 294 liQKSILRdavsDLAlHfL~klkimvikdieRediefick~l~c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg 373 (534)
T KOG0358|consen 294 LIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLGCKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITG 373 (534)
T ss_pred EEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcCCeecchhhhcChhhcCcchhhhhcccCCCccEEEEEE
Confidence 999976 99999999999999999999999999999999999999999999999999999985 55354
Q ss_pred --Ccccccccccccc
Q psy16434 727 --RPAQTCKYLHQNA 739 (745)
Q Consensus 727 --~~~~~~~~~~~~~ 739 (745)
+..++|+++-..|
T Consensus 374 ~~n~g~tvsil~RGs 388 (534)
T KOG0358|consen 374 IQNAGRTVSILLRGS 388 (534)
T ss_pred eecCCCceEEEEecC
Confidence 3567787775543
|
|
| >TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-27 Score=274.00 Aligned_cols=282 Identities=18% Similarity=0.201 Sum_probs=225.4
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++-++++-|+.++|| |++++|.++.+ ..+..++-+|. |..++++++++.+.+++
T Consensus 45 ~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGTtt~viLa~~Ll-~~a~~li~~gi~p~~Ii~g~~~a~~~~~~ 123 (517)
T TIGR02342 45 VIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGTTSVVILAGALL-GACETLLERGIHPTTISESFQIAADEAIK 123 (517)
T ss_pred EEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCcchHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4455543333332223789999999999999999999 88888999988 77888888897 99999999999999999
Q ss_pred HHHHHHHHH----H---HHHHhhc--cc---hhhHHHHHHHHH----hhcCCccceeeecCCCcceeecccccccccccc
Q psy16434 521 TFKGITKVF----V---KTLAENT--GV---KSNEVISKLYSA----HNEGKKTYGFDINGENSSVIDAAEAGILDLYLT 584 (745)
Q Consensus 521 vlk~~~~~I----P---r~LaeNA--Gl---d~~~vlsKL~~~----h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lV 584 (745)
.++.....+ + ..++..+ +. ...+.++++... -.+....--+|++ ++++.++.|+++.|+.++
T Consensus 124 ~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~--~i~i~k~~Ggs~~ds~li 201 (517)
T TIGR02342 124 ILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLN--DIKVVKKLGGTIDDTELI 201 (517)
T ss_pred HHHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHH--HeeEEeccCCChhhcEEE
Confidence 997764311 0 1111111 00 001111222110 0000000013333 358999999999999999
Q ss_pred hhhHhhhhhhc-chhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCC
Q psy16434 585 KMWALKYATSA-ANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGA 663 (745)
Q Consensus 585 kG~vL~~A~e~-a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~ 663 (745)
+|+++++...+ ..|++++.++++++++||||+++++.++++.++++++++.++++|++++++++++|++.|++||++++
T Consensus 202 ~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~ 281 (517)
T TIGR02342 202 EGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQK 281 (517)
T ss_pred eeEEEeccccccCCCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECC
Confidence 99999998877 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-----cHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCc
Q psy16434 664 KF-----GDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRP 728 (745)
Q Consensus 664 ~I-----~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~ 728 (745)
+| +|++++||.++||++++++++++|+|||++|||+++++++++.+++||+|+.|++. +.++|.+
T Consensus 282 ~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~ 353 (517)
T TIGR02342 282 SILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIGCKPIASIDHFTADKLGSAELVEEVTTDGGKIIK 353 (517)
T ss_pred CcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHCCEEEcchhhcCcccCcCCceEEEEEECCeEEEE
Confidence 98 99999999999999999999999999999999999999999999999999999954 6666644
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-28 Score=277.13 Aligned_cols=286 Identities=21% Similarity=0.261 Sum_probs=227.5
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++-++..-|++++|| |++++|.++.+ ..+..++-+|. |..++++++.+++.+++
T Consensus 48 ~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGTTt~viLa~~Ll-~~a~~li~~gi~p~~I~~g~~~a~~~~~~ 126 (536)
T TIGR02340 48 VTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDGTTSVVIIAAELL-KRADELIKRKVHPTSIISGYRLACKEAVK 126 (536)
T ss_pred EEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCCChhhHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4455544333332223789999999999999999999 88889999988 77778888887 88999999999999999
Q ss_pred HHHHH-HHHH----H---HHHHhhc---cc--hhhHHHHHHHHHh--h----cCCccceeeecCCCcceeeccccccccc
Q psy16434 521 TFKGI-TKVF----V---KTLAENT---GV--KSNEVISKLYSAH--N----EGKKTYGFDINGENSSVIDAAEAGILDL 581 (745)
Q Consensus 521 vlk~~-~~~I----P---r~LaeNA---Gl--d~~~vlsKL~~~h--~----~g~~~~GIDl~~~~ikI~dm~g~gI~Ds 581 (745)
.++.. ...+ + ..++..+ -+ ...+.++++.... . +.....-+|++. +++.++.|+++.|+
T Consensus 127 ~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~--I~i~k~~G~s~~~s 204 (536)
T TIGR02340 127 YIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKA--VNILKAHGGSARES 204 (536)
T ss_pred HHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHH--eEEEEecCCCcccc
Confidence 99864 3211 1 1122211 00 0112233332110 0 000111134443 48999999999999
Q ss_pred ccchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEe
Q psy16434 582 YLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVA 661 (745)
Q Consensus 582 ~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~ 661 (745)
.+++|+++++...+..|++++++++|+++++||++.+++.++++.++++.+++.+.++|++++++++++|+++|++||++
T Consensus 205 ~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~ 284 (536)
T TIGR02340 205 YLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLT 284 (536)
T ss_pred EEEEEEEEecccCCCCCcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEe
Confidence 99999999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCC------CCCCCcccCCceEe--cccccCccccc
Q psy16434 662 GAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVST------YIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 662 ~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l------~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
+++|+|.|+|||.++||++++|+++++|+|||++|||+++++++++ ..+.||+|+.|+++ +.++|.+-+.|
T Consensus 285 ~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~ 363 (536)
T TIGR02340 285 TGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGT 363 (536)
T ss_pred CCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcC
Confidence 9999999999999999999999999999999999999999999755 34459999999986 78887655433
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-27 Score=245.38 Aligned_cols=147 Identities=12% Similarity=0.088 Sum_probs=141.9
Q ss_pred cceeecccccccccccchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHH
Q psy16434 568 SSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQ 647 (745)
Q Consensus 568 ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~ 647 (745)
+++.+++|+++.|+.+++|+++++.+.+..|+++++||+|++++||||+++++. ++.+++++.++|+++++++
T Consensus 50 I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~~Le~~~~~~-------~~~~~~~~~~~E~~~l~~~ 122 (261)
T cd03334 50 VKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPLEYQRVEN-------KLLSLDPVILQEKEYLKNL 122 (261)
T ss_pred eEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEeeeeccccccC-------CHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999974 5789999999999999999
Q ss_pred HHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccC-CCCCCCCCcccCCceEe
Q psy16434 648 IKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL-VSTYIKMPSFCPAPPVQ 721 (745)
Q Consensus 648 V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssl-d~l~~~~LG~c~~~~~~ 721 (745)
+++|+++||||||++|+|+|+|+|||.++||+++++++++||+|||++|||++++++ +++.++.||+|+.|+++
T Consensus 123 v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rIa~~tGa~ii~~i~~~~~~~~lG~~~~v~~~ 197 (261)
T cd03334 123 VSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERISRCTGADIISSMDDLLTSPKLGTCESFRVR 197 (261)
T ss_pred HHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHHHHHHhCCEEecChhhhcCcccCcCcceEEEE
Confidence 999999999999999999999999999999999999999999999999999999995 48899999999999996
|
Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins. |
| >cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-27 Score=275.19 Aligned_cols=285 Identities=16% Similarity=0.171 Sum_probs=226.4
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++.+++.-|+.++|| |++++|.++.+ ..+..++-+|. |..++++++.+.+.+++
T Consensus 44 ~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDGTtt~vvLa~~ll-~~~~~li~~gi~p~~I~~g~~~a~~~~~~ 122 (515)
T cd03338 44 VIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDGTTSVVVLAGALL-SACESLLKKGIHPTVISESFQIAAKKAVE 122 (515)
T ss_pred EEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCCcchHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4455544333332223789999999999999999999 88888899887 67777777887 88999999999999999
Q ss_pred HHHHHHHHHH----HHH---Hhhccc---h--hhHHHHHHHHHhh--cCCcc--ceeeecCCCcceeecccccccccccc
Q psy16434 521 TFKGITKVFV----KTL---AENTGV---K--SNEVISKLYSAHN--EGKKT--YGFDINGENSSVIDAAEAGILDLYLT 584 (745)
Q Consensus 521 vlk~~~~~IP----r~L---aeNAGl---d--~~~vlsKL~~~h~--~g~~~--~GIDl~~~~ikI~dm~g~gI~Ds~lV 584 (745)
.++.....+. ..| +..+-- . ..+.++++....- -+... --+|++. +++.+..|+++.|+.++
T Consensus 123 ~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~--i~i~~~~Ggs~~ds~lv 200 (515)
T cd03338 123 ILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKD--IRIVKKLGGTIEDTELV 200 (515)
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHH--eEEEEecCCChhhceee
Confidence 9987654220 112 111100 0 1122222221100 00000 0234433 48888899999999999
Q ss_pred hhhHhhhhhhcch-hhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCC
Q psy16434 585 KMWALKYATSAAN-TILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGA 663 (745)
Q Consensus 585 kG~vL~~A~e~a~-mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~ 663 (745)
+|+++++...+.. |++.+.|+++++++||||+++++.+.++.++++++++.+.++|++++++++++|++.|++||++++
T Consensus 201 ~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~ 280 (515)
T cd03338 201 DGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQK 280 (515)
T ss_pred eeEEEeccccCcCCCCccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECC
Confidence 9999999888865 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-----cHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCcccc
Q psy16434 664 KF-----GDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQT 731 (745)
Q Consensus 664 ~I-----~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~ 731 (745)
+| ++++++||.++||++++++++++|+|||++|||+++++++++..+.||+|+.|++. |+++|.+-+.
T Consensus 281 ~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~ 355 (515)
T cd03338 281 SILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITG 355 (515)
T ss_pred CcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHHHCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEe
Confidence 98 99999999999999999999999999999999999999999999999999999996 5666654433
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-27 Score=273.19 Aligned_cols=270 Identities=19% Similarity=0.220 Sum_probs=221.2
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH------H
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF------V 530 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I------P 530 (745)
+||.++++-+++..|++++|| |++++|.++.+ ..+..++-+|. |..++++++++.+.+++.++.....+ +
T Consensus 69 ~hP~a~ll~~~a~~q~~~~GDGTTt~vvLa~~Ll-~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~ 147 (522)
T TIGR02345 69 VHPAAKTLVDIAKSQDSEVGDGTTSVVILAGELL-KEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQ 147 (522)
T ss_pred cChHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH-HhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCccccc
Confidence 788899999999999999999 88888999988 77778888897 99999999999999999997754311 1
Q ss_pred -HH---HHhhcc---c--hhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcc---hh
Q psy16434 531 -KT---LAENTG---V--KSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAA---NT 598 (745)
Q Consensus 531 -r~---LaeNAG---l--d~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a---~m 598 (745)
.. ++..+- . ...+.++++....-.....-++|.+. +++.++.|+++.|+.+++|+++++...+. .|
T Consensus 148 ~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~--I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~ 225 (522)
T TIGR02345 148 REVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKL--IGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQ 225 (522)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhccCChhH--heEEeecCCCHHhcceecceEEecccCccccccC
Confidence 11 122110 0 01122222211100000000344433 48999999999999999999999876644 46
Q ss_pred hcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCC
Q psy16434 599 ILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGL 678 (745)
Q Consensus 599 il~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gI 678 (745)
++++++++|+++++|||+.+.+.+..+.++++++++++.+.|++++.+++++|+++|++||+++++|+|.+++||.++||
T Consensus 226 ~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I 305 (522)
T TIGR02345 226 PKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNI 305 (522)
T ss_pred CceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 679 MGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 679 l~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
+++++++++|++|+|++|||+++++++++.++.||+|+.|+++ +.++|.+-+.|
T Consensus 306 ~~~~~v~~~dl~ria~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~ 361 (522)
T TIGR02345 306 FCAGRVSDEDLKRVVKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGC 361 (522)
T ss_pred EEEecCCHHHHHHHHHHhCCeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcC
Confidence 9999999999999999999999999999999999999999985 77888654433
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >KOG0360|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-27 Score=253.90 Aligned_cols=277 Identities=23% Similarity=0.285 Sum_probs=225.6
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHH----HHHHH
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITK----VFVKT 532 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~----~IPr~ 532 (745)
+||.++.|..-...|+.++|| ++++++..+.+ .++..++..+. +..++.+++.+...+++.+..-+. .+-+.
T Consensus 71 ~HPa~KiLvelaq~qd~evgDgttsvviia~eLl-~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~ 149 (545)
T KOG0360|consen 71 EHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELL-KNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQ 149 (545)
T ss_pred cchHHHHHHHHHHhccccccCCceEEEEEEHHhh-hhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchH
Confidence 899999999999999999999 88888888877 77777777777 888999999999999998875443 11112
Q ss_pred HHhhc----------cch----hhHHHHHHHHHh-h--cCCccceeeecCCCcceeecccccccccccchhhHhhhhhhc
Q psy16434 533 LAENT----------GVK----SNEVISKLYSAH-N--EGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSA 595 (745)
Q Consensus 533 LaeNA----------Gld----~~~vlsKL~~~h-~--~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~ 595 (745)
...|. |.| ..-++..++... . ++...|-++ ++.|.+..|.+..||++++|+++++....
T Consensus 150 ~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~----~vnILkahG~s~~eS~l~~GyaLnc~~as 225 (545)
T KOG0360|consen 150 ILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPIN----SVNILKAHGKSQIESMLLPGYALNCSVAS 225 (545)
T ss_pred HHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceecccc----ceeEEecCCccchhheeecceeeeccHhh
Confidence 22221 222 111221221110 1 111122221 24889999999999999999999999999
Q ss_pred chhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHH
Q psy16434 596 ANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNK 675 (745)
Q Consensus 596 a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k 675 (745)
..|+++|.++||+++++.|+-.++.+.-.+.+++|+.++++.+.|....++.+++|++.|+|||+++|||||++++||.+
T Consensus 226 q~m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~ve 305 (545)
T KOG0360|consen 226 QMMPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVE 305 (545)
T ss_pred hccccccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEeCCHHHHHHHHHHhCCeecccCCC------CCCCCCcccCCceEe--ccccc-----CccccccccccccCC
Q psy16434 676 YGLMGVRLNSKFDLRRLCKAVNATALPRLVS------TYIKMPSFCPAPPVQ--GRERD-----RPAQTCKYLHQNALD 741 (745)
Q Consensus 676 ~gIl~ir~v~k~dLeRIaraTGA~ivssld~------l~~~~LG~c~~~~~~--~~e~~-----~~~~~~~~~~~~~~~ 741 (745)
+|+|+|||++++||+||+++|||++++++.+ +.+..+|+|+.|.++ +++-+ +++.-|++|-.||=|
T Consensus 306 agamAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka~~aSiILrgaNd 384 (545)
T KOG0360|consen 306 AGAMAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKATSASIILRGAND 384 (545)
T ss_pred cchhhhHHHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCccceeeEEEecCCc
Confidence 9999999999999999999999999999984 455679999999774 44444 567789998887755
|
|
| >TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-26 Score=262.58 Aligned_cols=281 Identities=31% Similarity=0.481 Sum_probs=226.7
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.++|..-...+.-.-+||.++++-++++-|++++|| |++++|.++.+ ..+..++-.|. |..++++++++++.+++
T Consensus 54 ~~ITnDG~tIlk~i~~~hP~akll~e~a~sqd~~~GDGTTt~vvLa~~Ll-~~~~~li~~gi~p~~Ii~g~~~a~~~~~~ 132 (531)
T TIGR02346 54 LFVTNDAATILRELEVQHPAAKLLVMASEMQENEIGDGTNLVIVLAGELL-DKAEELIRMGLHPSEIIKGYEQALKKAME 132 (531)
T ss_pred EEEECcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhhHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4455544333333233789999999999999999999 88889999887 77778888887 88999999999999999
Q ss_pred HHHHHHH-HH-----H---HHHHhhc--c--chhhHHHHHHHH-----HhhcCCccceeeecCCCcceeecccccccccc
Q psy16434 521 TFKGITK-VF-----V---KTLAENT--G--VKSNEVISKLYS-----AHNEGKKTYGFDINGENSSVIDAAEAGILDLY 582 (745)
Q Consensus 521 vlk~~~~-~I-----P---r~LaeNA--G--ld~~~vlsKL~~-----~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~ 582 (745)
.++.... .+ . ..+++.+ + ......++++.. ...++.. .+|++. +++.++.|+++.|+.
T Consensus 133 ~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~~~~~--~~~~~~--I~i~ki~G~s~~ds~ 208 (531)
T TIGR02346 133 VLEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQLVAKACSTVMPKNPE--NFNVDN--IRVSKIMGGSISNSE 208 (531)
T ss_pred HHHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHhhcCCC--cCChhH--eeEEEecCCChhhce
Confidence 9976542 11 1 1121111 0 001233333321 1111111 244443 489999999999999
Q ss_pred cchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeC
Q psy16434 583 LTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662 (745)
Q Consensus 583 lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~ 662 (745)
+++|+++++... .|++++.|++++++++||++.++++++++.+++++++..+.+.|++++++++++|++.|++||+++
T Consensus 209 li~Gi~~~~~~~--~~~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~ 286 (531)
T TIGR02346 209 VLKGMVFNREAE--GSVKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTG 286 (531)
T ss_pred eEeeeEEeccCC--CCceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEC
Confidence 999999998743 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCcccc
Q psy16434 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQT 731 (745)
Q Consensus 663 ~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~ 731 (745)
++|+|.+++||.++||++++++++.+|+|||++|||+++++++++..++||+|+.|++. |.++|.+-+.
T Consensus 287 ~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~ 357 (531)
T TIGR02346 287 GSVGDMALHYCEKYNIMVLKIPSKFELRRLCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQ 357 (531)
T ss_pred CCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHHHCCEEecccccCCHhHccccceEEEEEECCEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999996 6677754443
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >KOG0363|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-25 Score=236.85 Aligned_cols=274 Identities=18% Similarity=0.236 Sum_probs=240.1
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHH-------HH
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITK-------VF 529 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~-------~I 529 (745)
++|+++.|...+++|+.++|| |++++|+++++ ..+..++-.-. |+.|+.+++.+..-|++++.+... .+
T Consensus 72 DnpaAkvLv~~S~vQD~EvGDGTTSV~vlaaeLl-reAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kf 150 (527)
T KOG0363|consen 72 DNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELL-REAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKF 150 (527)
T ss_pred CCchhhheeccccccccccCCCceehHHHHHHHH-HHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHH
Confidence 789999999999999999999 99999999987 77777666555 999999999999999999987654 22
Q ss_pred HHHHHhhccchhhHHHHHHHHHhhcCCccceeeecC--------CCcceeecccccccccccchhhHhhhhhhcchhhcc
Q psy16434 530 VKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDING--------ENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601 (745)
Q Consensus 530 Pr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~--------~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~ 601 (745)
-..|..- ..+.+.+|+.++|.+.++.+.+|+.. +.++|.+..|+...||++=.|+.+++.+.. ..|++
T Consensus 151 r~DLl~i---arTTL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv-~qpkr 226 (527)
T KOG0363|consen 151 REDLLKI---ARTTLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGV-NQPKR 226 (527)
T ss_pred HHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccccccccccceeccccCC-CCccc
Confidence 3344443 37889999999988877777666322 236999999999999999999999988765 67999
Q ss_pred cccceeeeeccCcccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeE
Q psy16434 602 QTKAKIAVYTCPVDIATTET-KGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMG 680 (745)
Q Consensus 602 IDn~kIlll~~~Le~~k~e~-~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ 680 (745)
+.|++|++-+.|++..|.+. .+.|.+++..++.++...|++.++++|++|.+.|+|+.++++-|.++.+++|..+|||+
T Consensus 227 iena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~a 306 (527)
T KOG0363|consen 227 IENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMA 306 (527)
T ss_pred ccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcce
Confidence 99999999999999999996 79999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccC------ccccccccccc
Q psy16434 681 VRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDR------PAQTCKYLHQN 738 (745)
Q Consensus 681 ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~------~~~~~~~~~~~ 738 (745)
|.+...+-+||++-+||+.|++.||.+...+||+|..+++. |++|.- .-+-|++.-..
T Consensus 307 IEHADFdGiERLalvtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVlrG 372 (527)
T KOG0363|consen 307 IEHADFDGIERLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRG 372 (527)
T ss_pred eecccchhHHHHhhcccceeeeccCCcchhccccchhhHHHhcCccceeeecccccccceEEEEec
Confidence 99999999999999999999999999999999999999984 888762 23467765443
|
|
| >COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-24 Score=241.50 Aligned_cols=267 Identities=22% Similarity=0.211 Sum_probs=225.2
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHHH--H---
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVFV--K--- 531 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~IP--r--- 531 (745)
+||.++++-.+++-|+++.|| |++++|+++.+ ..+..++-+|. |..|.++++.+.+.|+..++.....+- .
T Consensus 63 ehp~akll~eva~~qd~e~GDGTTtavVLa~all-~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~ 141 (524)
T COG0459 63 EHPGAKLLVEVAKKQDDEAGDGTTTAVVLAGALL-KEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEEL 141 (524)
T ss_pred cCchhHHHHHHHHHHHHHhcCchHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhh
Confidence 799999999999999999999 89999999988 77888888998 889999999999999999998765211 0
Q ss_pred --HHHhhccc--hhhHHHHHHHHHhhcCCcccee---eecCCCcceeecccccccccccchhhHhhh-hhhcchhh-ccc
Q psy16434 532 --TLAENTGV--KSNEVISKLYSAHNEGKKTYGF---DINGENSSVIDAAEAGILDLYLTKMWALKY-ATSAANTI-LQQ 602 (745)
Q Consensus 532 --~LaeNAGl--d~~~vlsKL~~~h~~g~~~~GI---Dl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~-A~e~a~mi-l~I 602 (745)
....-++. ...+.+..+....- ...|- |++. +.+.+..++...|+.+++|+++++ ..++..|+ .++
T Consensus 142 ~~~~t~v~sk~~~~~~~i~~lv~~Av---~~v~~~~~d~~~--i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~ 216 (524)
T COG0459 142 KIAITSVASKSANSDEEIGELVVEAV---EKVGKEQSDLDG--IIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRL 216 (524)
T ss_pred hhhhheeeeeeccChHHHHHHHHHHH---HHhcccccccCC--eEEEEecCCCccceEEEeeEEecCCccCCCCCCcccc
Confidence 00000000 01123333322110 00111 3333 488899999999999999999999 88899999 899
Q ss_pred ccceeeeeccCcccccccccceEEecCHHHHHHHHHHHH-HHHHHHHHHHHHcCCc-EEEeCCcccHHHHHHHHHcCCeE
Q psy16434 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEE-NQLEEQIKAIADTGAN-VVVAGAKFGDMALHYLNKYGLMG 680 (745)
Q Consensus 603 Dn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~-~~i~~~V~~I~~~gvn-VVl~~~~I~d~al~~L~k~gIl~ 680 (745)
+||+|++++++|++.+++...++.++++.+|+.|.++|+ +.+..+|+++++.|+| |+++++||+|+++|||.+.+|++
T Consensus 217 e~~~Ili~d~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt 296 (524)
T COG0459 217 ENPKILLLDKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILT 296 (524)
T ss_pred ccceEEEEccccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhccee
Confidence 999999999999999999999999999999999999999 9999999999999999 99999999999999999999999
Q ss_pred EEeCCHHHH-HHHHHHhCCeecccCCCCCCCCCcc--cCCceEe--cccccCccccc
Q psy16434 681 VRLNSKFDL-RRLCKAVNATALPRLVSTYIKMPSF--CPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 681 ir~v~k~dL-eRIaraTGA~ivssld~l~~~~LG~--c~~~~~~--~~e~~~~~~~~ 732 (745)
+++++++|+ +||++++||++++.+++++...+|. |+.+++. +++++.+.+.|
T Consensus 297 ~~~v~~~dl~~~l~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~ 353 (524)
T COG0459 297 GRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQER 353 (524)
T ss_pred cceecchhhHHHHHHccCceEEeecccCceeecCccccceEEEeeccchhhhhhhhh
Confidence 999999999 8999999999999999999999999 9999997 77777655544
|
|
| >cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.7e-24 Score=240.62 Aligned_cols=257 Identities=15% Similarity=0.135 Sum_probs=198.7
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++.+++.-|++++|| |++++|+++.+ ..+..++-.|. |..++++++++.+.++.
T Consensus 48 ~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~GDGTTt~vvLa~~Ll-~~a~~li~~gi~P~~I~~g~~~a~~~~~~ 126 (484)
T cd03342 48 IKLTKDGNVLLSEMQIQHPTASMIARAATAQDDITGDGTTSNVLLIGELL-KQAERYIQEGVHPRIITEGFELAKNKALK 126 (484)
T ss_pred EEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHhCCChhhHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 4445443233332223789999999999999999999 88889999887 66777777787 88999999999999999
Q ss_pred HHHHHHHHHH-----HHH---Hhhccc-h----hhHHHHHHHHHhh--cCCccceeeecCCCcceeecccccccccccch
Q psy16434 521 TFKGITKVFV-----KTL---AENTGV-K----SNEVISKLYSAHN--EGKKTYGFDINGENSSVIDAAEAGILDLYLTK 585 (745)
Q Consensus 521 vlk~~~~~IP-----r~L---aeNAGl-d----~~~vlsKL~~~h~--~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVk 585 (745)
.++.....+. ..| +.-+-- . ..+.++++....- -+...--+|.+. +++.++.|+++.|+.+++
T Consensus 127 ~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~--I~i~ki~ggs~~ds~~i~ 204 (484)
T cd03342 127 FLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPIDLHM--VEIMQMQHKSDSDTKLIR 204 (484)
T ss_pred HHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcCCccChhH--eEEEEecCCChhhceEEe
Confidence 9987654221 112 111100 0 0122222211100 000000234433 489999999999999999
Q ss_pred hhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcc
Q psy16434 586 MWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKF 665 (745)
Q Consensus 586 G~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I 665 (745)
|+++++...+..|++++.|++|+++++||++++++.+.++.++ ||+++++|
T Consensus 205 G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~~~~~~~~~~~~-----------------------------lvi~~~~I 255 (484)
T cd03342 205 GLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYS-----------------------------VVINQKGI 255 (484)
T ss_pred eEEEecCCCCCCCCccccCceEEEEeCCCCCCccccCcEEEEE-----------------------------EEEeCCCc
Confidence 9999999888999999999999999999999999988777654 99999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 666 GDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 666 ~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
+|.|++||.++||+++++++++||+|||++|||+++++++++.+++||+|+.|+++ |.++|.+-+.|
T Consensus 256 ~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~ 324 (484)
T cd03342 256 DPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGV 324 (484)
T ss_pred cHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEEecccccCChhhCcccceEEEEEECCeEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999875 78888765544
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-23 Score=239.02 Aligned_cols=282 Identities=23% Similarity=0.331 Sum_probs=226.7
Q ss_pred eEEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHH
Q psy16434 443 KIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGV 519 (745)
Q Consensus 443 kIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL 519 (745)
++.+++......+.-.-+||.++.+-++..-++.++|| +++++|.++.+ ..+..++-+|. +..+.+.++.+++.++
T Consensus 24 ~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll-~~~~~li~~gi~p~~I~~~~~~~~~~~~ 102 (485)
T PF00118_consen 24 KIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELL-RNALKLIKKGIHPQEIIRGLQEALKIIL 102 (485)
T ss_dssp SEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHH-HHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred CeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchh-hhhhhhhhccccccchhhhhhhhhhhhh
Confidence 45555544333332222788999999999999999999 88888888877 67777777787 8899999999999999
Q ss_pred HHHHHHHHHH------HHHHHhhc---cc--hhhHHHHHHHHHhhcC-CccceeeecCCCcceeecccccccccccchhh
Q psy16434 520 NTFKGITKVF------VKTLAENT---GV--KSNEVISKLYSAHNEG-KKTYGFDINGENSSVIDAAEAGILDLYLTKMW 587 (745)
Q Consensus 520 ~vlk~~~~~I------Pr~LaeNA---Gl--d~~~vlsKL~~~h~~g-~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~ 587 (745)
+.+......+ -..++..+ .+ ...+.++++....... ... .|+... ++.++.++.+.|+.+++|+
T Consensus 103 ~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~--~~~~~i--~i~~i~g~~~~dS~li~Gi 178 (485)
T PF00118_consen 103 EYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSN--FDLDNI--KIIKIPGGSISDSELINGI 178 (485)
T ss_dssp HHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTT--HHGGGE--EEEEEESSSSGGEEEESEE
T ss_pred hhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhccc--ccccch--hhhhhccccccccccccce
Confidence 9997552100 01222211 10 1113333332211100 000 344444 8899999999999999999
Q ss_pred HhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccH
Q psy16434 588 ALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGD 667 (745)
Q Consensus 588 vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d 667 (745)
++++...+..|+++++++++++++++|++.+. .+.++.++++++++.+.++|++++++++++|.+.|++||+++++|++
T Consensus 179 v~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~ 257 (485)
T PF00118_consen 179 VLDKGFSSPNMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDD 257 (485)
T ss_dssp EESSSBSSTTSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTH
T ss_pred eeeccccccccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeeccccc
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccc
Q psy16434 668 MALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQ 730 (745)
Q Consensus 668 ~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~ 730 (745)
.++++|.++||++++++++++|+|||++|||+++++++++.++.+|+|+.+++. +.++|.+-+
T Consensus 258 ~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~ 322 (485)
T PF00118_consen 258 EALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEEREIGNKKYIFIE 322 (485)
T ss_dssp HHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEEEETSSEEEEEE
T ss_pred ccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhhcccccccccccc
Confidence 999999999999999999999999999999999999999998889999999764 777776644
|
Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A .... |
| >cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-22 Score=230.34 Aligned_cols=230 Identities=20% Similarity=0.251 Sum_probs=181.3
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH---H---
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF---V--- 530 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I---P--- 530 (745)
+||.++++.++.+.|++++|| |++++|.++.+ .++..++-+|. |..|+++++++++.+++.++.....+ .
T Consensus 68 ~hP~a~ll~~~a~~q~~~~GDGTtt~vvL~~~Ll-~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~ 146 (480)
T cd03337 68 AHPAAKSMIELSRTQDEEVGDGTTSVIILAGEIL-AVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQ 146 (480)
T ss_pred cChHHHHHHHHHHhHHHHhCCCcchhHhhHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHH
Confidence 789999999999999999999 88899999988 77878888897 89999999999999999998765311 0
Q ss_pred -HHHHhhc---cc--hhhHHHHHHHHHhhc--CCccce----eeecCCCcceeecccccccccccchhhHhhhhhhcchh
Q psy16434 531 -KTLAENT---GV--KSNEVISKLYSAHNE--GKKTYG----FDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANT 598 (745)
Q Consensus 531 -r~LaeNA---Gl--d~~~vlsKL~~~h~~--g~~~~G----IDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~m 598 (745)
..++..+ -. ...+.++++...... +...-| +|++. .+++.+++|+++.|+.+++|+++++.+.+..|
T Consensus 147 l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~-~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m 225 (480)
T cd03337 147 MLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKR-YAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKM 225 (480)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhh-ceEEEEecCCCHHhcccccceEEeccCCCCCC
Confidence 1122211 00 011233333211100 000001 33322 24789999999999999999999999999999
Q ss_pred hcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCC
Q psy16434 599 ILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGL 678 (745)
Q Consensus 599 il~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gI 678 (745)
+.++++++|++++||||+ ||+++++|+|.|++||.++||
T Consensus 226 ~~~~~n~kIlll~~~Le~-----------------------------------------lvi~~k~I~d~al~~L~~~~I 264 (480)
T cd03337 226 RRRIENPRIVLLDCPLEY-----------------------------------------LVITEKGVSDLAQHYLVKAGI 264 (480)
T ss_pred CcEecCCCEEEEecCcce-----------------------------------------EEEeCCCccHHHHHHHHHCCc
Confidence 999999999999999988 999999999999999999999
Q ss_pred eEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcc-cCCceEe--cccccCccccc
Q psy16434 679 MGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSF-CPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 679 l~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~-c~~~~~~--~~e~~~~~~~~ 732 (745)
++++++++++|+|||++|||+++++++++.++.||+ |+.|+++ +.++|.+-..|
T Consensus 265 ~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~ 321 (480)
T cd03337 265 TALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITEC 321 (480)
T ss_pred EEEEeCCHHHHHHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcC
Confidence 999999999999999999999999999999999999 6676765 66666544333
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >cd03333 chaperonin_like chaperonin_like superfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-20 Score=191.29 Aligned_cols=162 Identities=25% Similarity=0.422 Sum_probs=144.1
Q ss_pred ccccceeeeccccccCC-ChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccceeEeeEEEeecccC--Ccee
Q psy16434 362 ENVTKGIKSAIMSKQYG-NEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVEG--DITK 438 (745)
Q Consensus 362 ~~L~~va~tsl~sK~~~-~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~ 438 (745)
+.|.++|+|+++||+ + +.+.|++++++|+..++++. +.++.++|+|+++.||++.||++++|++|++++.+ ||++
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~-~~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~ 79 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDN-RMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKR 79 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccC-CCCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCCeE
Confidence 468899999999999 6 58999999999999998753 25777899999999999999999999999999987 4899
Q ss_pred eeCceEEEeccCCCcc-------cccc-------C---------------------------CCCCcccccccccEEEEE
Q psy16434 439 QTKAKIAVYTCPVDIA-------TTET-------K---------------------------TPPAASELGYADSVAVDE 477 (745)
Q Consensus 439 i~nakIlil~~~Le~~-------k~e~-------k---------------------------~~p~a~~LG~a~~vq~~e 477 (745)
++||+|++++++||+. .... + +++++..||+|+++++.+
T Consensus 80 ~~n~~Ill~~~~le~vii~~~~I~~~al~~l~~~~I~~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~ 159 (209)
T cd03333 80 LENAKILLLDCPLEYVVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETK 159 (209)
T ss_pred cCCCcEEEEeCCeeEEEEecCcccHHHHHHHHHCCCEEEEeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEE
Confidence 9999999999999971 1110 0 677888999999999999
Q ss_pred ECCeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHH
Q psy16434 478 LGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGIT 526 (745)
Q Consensus 478 iGdtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~ 526 (745)
+|++++++|.++.. +.++||++||+++.+++|++|+++||++++++++
T Consensus 160 ~~~~~~~~~~~~~~-~~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~ 207 (209)
T cd03333 160 IGEEKLTFIEGCKG-GKAATILLRGATEVELDEVKRSLHDALCAVRAAV 207 (209)
T ss_pred ECCeEEEEEEcCCC-CCEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998875 7899999999999999999999999999999876
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. |
| >cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-21 Score=218.03 Aligned_cols=246 Identities=28% Similarity=0.453 Sum_probs=186.6
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++-++..-|++++|| |++++|.++.+ .++..++-+|. |..++++++++.+.+++
T Consensus 44 ~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTTt~vvL~~~Ll-~~~~~li~~gi~p~~Ii~g~~~a~~~~~~ 122 (472)
T cd03341 44 LFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTNLVVVLAGELL-EKAEELLRMGLHPSEIIEGYEKALKKALE 122 (472)
T ss_pred EEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhhHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4445443233222222788899999999999999999 88888899887 77777777887 88999999999999999
Q ss_pred HHHHHHHH-H--------HHHHHhhc---c-chhhHHHHHHHHHhh--cCCcc-ceeeecCCCcceeecccccccccccc
Q psy16434 521 TFKGITKV-F--------VKTLAENT---G-VKSNEVISKLYSAHN--EGKKT-YGFDINGENSSVIDAAEAGILDLYLT 584 (745)
Q Consensus 521 vlk~~~~~-I--------Pr~LaeNA---G-ld~~~vlsKL~~~h~--~g~~~-~GIDl~~~~ikI~dm~g~gI~Ds~lV 584 (745)
.++..... + -..+++.+ - ......++++....- -+... --+|++. +++.++.|+++.|+.++
T Consensus 123 ~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~~--i~i~ki~Gg~~~ds~lv 200 (472)
T cd03341 123 ILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDN--IRVVKILGGSLEDSKVV 200 (472)
T ss_pred HHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhhccCCcCChhH--eEEEEecCCCcccceEE
Confidence 99776421 1 01122211 0 001223333321100 00000 0134433 48999999999999999
Q ss_pred hhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCc
Q psy16434 585 KMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAK 664 (745)
Q Consensus 585 kG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~ 664 (745)
+|+++++..+ .+++++++++++++++|||+ |++||+++++
T Consensus 201 ~Giv~~~~~~--~~~~~~~n~~Ili~~~~Le~--------------------------------------g~~lvi~~~~ 240 (472)
T cd03341 201 RGMVFKREPE--GSVKRVKKAKVAVFSCPFDI--------------------------------------GVNVIVAGGS 240 (472)
T ss_pred eeEEEccccC--CCceeccCCcEEEEeccccC--------------------------------------CCeEEEECCC
Confidence 9999986543 45689999999999999998 9999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 665 FGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 665 I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
|+|.+++||+++||++++++++++|+|||++|||+++++++++.++.||+|+.|++. |.++|.+-+.|
T Consensus 241 I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~ 310 (472)
T cd03341 241 VGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQN 310 (472)
T ss_pred CCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCHhHCCCceEEEEEEECCeeEEEEEcc
Confidence 999999999999999999999999999999999999999999999999999999996 67777655444
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >cd00309 chaperonin_type_I_II chaperonin families, type I and type II | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-20 Score=214.71 Aligned_cols=244 Identities=24% Similarity=0.262 Sum_probs=189.8
Q ss_pred eEEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHH
Q psy16434 443 KIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGV 519 (745)
Q Consensus 443 kIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL 519 (745)
++.+++..-...+.-.-+||.++.+-++.+-++.++|| +++++|.++.+ ..+..++-+|. |..++++++++++.++
T Consensus 43 ~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGTtt~viL~~~ll-~~~~~li~~gi~p~~I~~g~~~a~~~~~ 121 (464)
T cd00309 43 DPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGTTTVVVLAGELL-KEAEKLLAAGIHPTEIIRGYEKAVEKAL 121 (464)
T ss_pred CeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCchhHHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 34455544333332222799999999999999999999 88888999887 67777777786 8899999999999999
Q ss_pred HHHHHHHHH--H-----HHHHHhhccch------hhHHHHHHHHHhhcCCcccee---eecCCCcceeeccccccccccc
Q psy16434 520 NTFKGITKV--F-----VKTLAENTGVK------SNEVISKLYSAHNEGKKTYGF---DINGENSSVIDAAEAGILDLYL 583 (745)
Q Consensus 520 ~vlk~~~~~--I-----Pr~LaeNAGld------~~~vlsKL~~~h~~g~~~~GI---Dl~~~~ikI~dm~g~gI~Ds~l 583 (745)
+.+++.... . -..++..+ +. ..+.++++....-. ..+- ..+.+.+++.+..++.+.|+.+
T Consensus 122 ~~L~~~~~~~~~~~~~~l~~ia~ts-l~sK~~~~~~~~l~~l~~~Ai~---~v~~~~~~~~~~~I~i~k~~gg~~~ds~l 197 (464)
T cd00309 122 EILKEIAVPIDVEDREELLKVATTS-LNSKLVSGGDDFLGELVVDAVL---KVGKENGDVDLGVIRVEKKKGGSLEDSEL 197 (464)
T ss_pred HHHHHhcCccCCCCHHHHHHHhHhc-ccccccccchHHHHHHHHHHHH---HhccccCccccceEEEEecCCCCccccee
Confidence 999875531 1 12222211 11 12222222211100 0111 1223446899999999999999
Q ss_pred chhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCC
Q psy16434 584 TKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGA 663 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~ 663 (745)
+.|+++++...+..|+..+++++|+++++|||+ ||++++
T Consensus 198 i~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~-----------------------------------------lIi~~~ 236 (464)
T cd00309 198 VVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY-----------------------------------------VVIAEK 236 (464)
T ss_pred eeeEEEecCCCCCCCceeecCceEEEEecCcce-----------------------------------------EEecCC
Confidence 999999999999999999999999999999998 999999
Q ss_pred cccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 664 KFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 664 ~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
+|+|.|++||.++||++++++++++|+|||++|||+++++++++..+.||+|+.|++. |.++|++-..|
T Consensus 237 ~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~ 307 (464)
T cd00309 237 GIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGC 307 (464)
T ss_pred CcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCcccCccccEEEEEEEcCeeEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999996 67677554433
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. |
| >cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-19 Score=187.90 Aligned_cols=147 Identities=24% Similarity=0.333 Sum_probs=131.5
Q ss_pred ChhhHHHHHHHHHHhhcCCC--CCCCCcc-ceEEEEccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCc
Q psy16434 379 NEDFLTDLITKACVSILPDG--SSSFNVD-NVRITKILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDI 453 (745)
Q Consensus 379 ~~~~ls~LivdAv~~v~~~~--~~~~dl~-~I~I~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~ 453 (745)
+.++|++|+++|+..+.++. ++.+|++ +|+|.+++||++.||++++|++|++.+.+ ||++++||||++++++||+
T Consensus 19 ~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~~Le~ 98 (261)
T cd03334 19 WLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPLEY 98 (261)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEeeeecc
Confidence 36899999999999997542 2468876 59999999999999999999999999876 6999999999999999999
Q ss_pred cccccC--------------------------------------------------------------------------
Q psy16434 454 ATTETK-------------------------------------------------------------------------- 459 (745)
Q Consensus 454 ~k~e~k-------------------------------------------------------------------------- 459 (745)
.+++.+
T Consensus 99 ~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rIa~~tGa~ii~~ 178 (261)
T cd03334 99 QRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERISRCTGADIISS 178 (261)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHHHHHHhCCEEecC
Confidence 886532
Q ss_pred --CCCCcccccccccEEEEEECC-----eeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHH
Q psy16434 460 --TPPAASELGYADSVAVDELGD-----TAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGIT 526 (745)
Q Consensus 460 --~~p~a~~LG~a~~vq~~eiGd-----tsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~ 526 (745)
++++++.||+|+.++++++|+ +++++|+|+.. ++++||++||+|+.+++|++|+++||+++++++.
T Consensus 179 i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~-~~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~ 251 (261)
T cd03334 179 MDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPK-ELGCTILLRGGDLEELKKVKRVVEFMVFAAYHLK 251 (261)
T ss_pred hhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCC-CceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999996 79999999976 7899999999999999999999999999999865
|
Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins. |
| >PRK12849 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-18 Score=201.53 Aligned_cols=234 Identities=16% Similarity=0.162 Sum_probs=177.5
Q ss_pred CCC----CcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH---
Q psy16434 460 TPP----AASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF--- 529 (745)
Q Consensus 460 ~~p----~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I--- 529 (745)
+|| .++++.++++.|++++|| |++++|+|+.+ ..+..++-.|. |..|+++++++++.++..|+.....+
T Consensus 62 ~hp~~~~~a~ll~~~a~~qd~e~GDGTTtvviLageLL-~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~ 140 (542)
T PRK12849 62 EDPFENLGAQLVKEVASKTNDVAGDGTTTATVLAQALV-QEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGS 140 (542)
T ss_pred CCccHhHHHHHHHHHHHhcCCccCCCccHHHHHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 677 789999999999999999 88889999988 77778888887 88999999999999999998765311
Q ss_pred --HHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccc-cccchhhHhhhhhhcch-------hh
Q psy16434 530 --VKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILD-LYLTKMWALKYATSAAN-------TI 599 (745)
Q Consensus 530 --Pr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~D-s~lVkG~vL~~A~e~a~-------mi 599 (745)
-..++..+. ...+.++++....- ..+|-+ +.+.+. .++++.| +.+++|+++++...+.. |+
T Consensus 141 ~~l~~va~ts~-~~~~~l~~lv~~Av---~~v~~~---g~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~ 211 (542)
T PRK12849 141 EEIAQVATISA-NGDEEIGELIAEAM---EKVGKD---GVITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERME 211 (542)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHH---HHhccC---CcEeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCce
Confidence 122333222 12233333322110 011111 111221 4666766 79999999987777663 57
Q ss_pred cccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHc---
Q psy16434 600 LQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKY--- 676 (745)
Q Consensus 600 l~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~--- 676 (745)
..+++++|+++++.+ +++++++ +++++|.+.|++|||++++|+|.|+++|.++
T Consensus 212 ~~~~n~~Ili~d~~i-------------~~~~~~~-----------~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~ 267 (542)
T PRK12849 212 AVLEDPLILLTDKKI-------------SSLQDLL-----------PLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLR 267 (542)
T ss_pred EEeeCcEEEeecCCc-------------CCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhh
Confidence 889999999999954 3444443 3688999999999999999999999999999
Q ss_pred ---CCeEEEeCC-----HHHHHHHHHHhCCeecc-----cCCCCCCCCCcccCCceEecccccCc
Q psy16434 677 ---GLMGVRLNS-----KFDLRRLCKAVNATALP-----RLVSTYIKMPSFCPAPPVQGRERDRP 728 (745)
Q Consensus 677 ---gIl~ir~v~-----k~dLeRIaraTGA~ivs-----sld~l~~~~LG~c~~~~~~~~e~~~~ 728 (745)
||+++++++ +++|+|||++|||++++ +++++.+++||+|+.|++.. ++|..
T Consensus 268 ~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~-~~~~~ 331 (542)
T PRK12849 268 GGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK-DNTTI 331 (542)
T ss_pred ccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee-eeEEE
Confidence 999999998 55699999999999999 68999999999999999853 44443
|
|
| >cd03344 GroEL GroEL_like type I chaperonin | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-18 Score=199.30 Aligned_cols=238 Identities=18% Similarity=0.164 Sum_probs=182.9
Q ss_pred CCC----CcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH---
Q psy16434 460 TPP----AASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF--- 529 (745)
Q Consensus 460 ~~p----~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I--- 529 (745)
+|| .++.+-+++..|++++|| |++++|+++.+ ..+..++-.|. |..++++++.+.+.++..|+.....+
T Consensus 60 ~hp~~~~~a~ll~~~a~~qd~e~GDGTTtvviLa~~Ll-~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~ 138 (520)
T cd03344 60 EDPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAII-KEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTK 138 (520)
T ss_pred CCcchhHHHHHHHHHHhhhccccCCCcchHHHHHHHHH-HHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 677 788999999999999999 88889999988 77777788887 88999999999999999998765311
Q ss_pred --HHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccc-cccchhhHhhhhhhcch-------hh
Q psy16434 530 --VKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILD-LYLTKMWALKYATSAAN-------TI 599 (745)
Q Consensus 530 --Pr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~D-s~lVkG~vL~~A~e~a~-------mi 599 (745)
-..++..+- ...+.++++....-. .+|-+ + .+.-..++++.| +.+++|+++++...+.. |+
T Consensus 139 ~~l~~va~ts~-~~~~~l~~lv~~A~~---~v~~~---~--~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~ 209 (520)
T cd03344 139 EEIAQVATISA-NGDEEIGELIAEAME---KVGKD---G--VITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKME 209 (520)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHH---HhccC---C--cEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCe
Confidence 122333221 223344444322110 11211 2 122246788888 79999999998877665 44
Q ss_pred cccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCC-
Q psy16434 600 LQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGL- 678 (745)
Q Consensus 600 l~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gI- 678 (745)
.++++++|++++++| ++++++.+ ++++|.+.|++|||++++|+|.|+++|.++||
T Consensus 210 ~~~~n~~Ili~d~~l-------------~~~~~l~~-----------~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~ 265 (520)
T cd03344 210 VELENPYILLTDKKI-------------SSIQELLP-----------ILELVAKAGRPLLIIAEDVEGEALATLVVNKLR 265 (520)
T ss_pred EEeeCCEEEEECCCC-------------CCHHHHHH-----------HHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCc
Confidence 678999999999996 44544333 57889999999999999999999999999999
Q ss_pred -----eEEEeC-----CHHHHHHHHHHhCCeecc-----cCCCCCCCCCcccCCceEecccccCccccc
Q psy16434 679 -----MGVRLN-----SKFDLRRLCKAVNATALP-----RLVSTYIKMPSFCPAPPVQGRERDRPAQTC 732 (745)
Q Consensus 679 -----l~ir~v-----~k~dLeRIaraTGA~ivs-----sld~l~~~~LG~c~~~~~~~~e~~~~~~~~ 732 (745)
++++++ ++++|+|||++|||++++ +++++..++||+|+.|++.. ++|.+-..|
T Consensus 266 ~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~-~~~~~i~~~ 333 (520)
T cd03344 266 GGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK-DDTTIIGGA 333 (520)
T ss_pred cCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee-ceEEEEeCC
Confidence 998877 899999999999999999 88899888999999999865 555544444
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. |
| >PRK00013 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-18 Score=199.41 Aligned_cols=239 Identities=17% Similarity=0.165 Sum_probs=184.2
Q ss_pred CCC----CcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH--H
Q psy16434 460 TPP----AASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF--V 530 (745)
Q Consensus 460 ~~p----~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I--P 530 (745)
+|| .++++.+++..|++++|| |++++|.++.+ ..+..++-.|. |..|+++++++++.++..|+.....+ .
T Consensus 62 ~hp~~~~~akll~e~a~~qd~e~GDGTTtvviLa~~LL-~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~ 140 (542)
T PRK00013 62 EDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIV-REGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDK 140 (542)
T ss_pred CCchhhHHHHHHHHHHHhcCcccCCccchHHHHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 677 689999999999999999 88889999988 77778888887 78999999999999999998765311 0
Q ss_pred ---HHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcch-------hhc
Q psy16434 531 ---KTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAAN-------TIL 600 (745)
Q Consensus 531 ---r~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~-------mil 600 (745)
..++..+. ...+.++++....-. .+|-+ +.+.+.+..+ ...|+.+++|+++++...+.. |+.
T Consensus 141 ~~l~~va~ts~-~~~~~ls~lv~~Av~---~v~~~---g~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~ 212 (542)
T PRK00013 141 EEIAQVATISA-NGDEEIGKLIAEAME---KVGKE---GVITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEA 212 (542)
T ss_pred HHHHHHHHhcc-cchHHHHHHHHHHHH---HhCcC---CcEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeE
Confidence 22222221 122333443222110 11211 1235555555 777999999999998877774 478
Q ss_pred ccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcC---
Q psy16434 601 QQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYG--- 677 (745)
Q Consensus 601 ~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~g--- 677 (745)
.++|++|+++++++ ++++++. +++++|++.|++|||++++|+|.|+++|.+++
T Consensus 213 ~~~n~~Ilv~d~~i-------------~~~~~l~-----------~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g 268 (542)
T PRK00013 213 ELENPYILITDKKI-------------SNIQDLL-----------PVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRG 268 (542)
T ss_pred EEecCEEEEEcCcc-------------CCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcc
Confidence 89999999999954 4555544 56888999999999999999999999999997
Q ss_pred ---CeEEEeCC-----HHHHHHHHHHhCCeecc-----cCCCCCCCCCcccCCceEecccccCccccc
Q psy16434 678 ---LMGVRLNS-----KFDLRRLCKAVNATALP-----RLVSTYIKMPSFCPAPPVQGRERDRPAQTC 732 (745)
Q Consensus 678 ---Il~ir~v~-----k~dLeRIaraTGA~ivs-----sld~l~~~~LG~c~~~~~~~~e~~~~~~~~ 732 (745)
|+++|+++ +++|+|||++|||++++ +++++..++||+|+.|++.. ++|.+-..|
T Consensus 269 ~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~-~~~~~i~~~ 335 (542)
T PRK00013 269 TLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK-DNTTIVDGA 335 (542)
T ss_pred cceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec-CEEEEEeCC
Confidence 99999997 88999999999999999 79999999999999999864 555544333
|
|
| >PRK12851 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-18 Score=200.71 Aligned_cols=239 Identities=16% Similarity=0.151 Sum_probs=184.2
Q ss_pred CCC----CcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH---
Q psy16434 460 TPP----AASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF--- 529 (745)
Q Consensus 460 ~~p----~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I--- 529 (745)
+|| .++++-++++.|++++|| |++++|.++.+ ..+..++-.|. |..|+++++++++.++..|+.....+
T Consensus 63 ~hp~~~~~akll~~~a~~qd~e~GDGTTtvviLa~~LL-~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~ 141 (541)
T PRK12851 63 EDKFENMGAQMVREVASKTNDVAGDGTTTATVLAQAIV-REGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTN 141 (541)
T ss_pred CCchhhHHHHHHHHHHHhhhHhhCCCccHHHHHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 677 778999999999999999 88889999988 77777888887 88999999999999999998765421
Q ss_pred --HHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcch-------hhc
Q psy16434 530 --VKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAAN-------TIL 600 (745)
Q Consensus 530 --Pr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~-------mil 600 (745)
...++..+. ...+.++++....-. .+|-+ +.+.+.+.. +...|+.+++|+++++...+.. |+.
T Consensus 142 ~~l~~va~~s~-~~~~~l~~lv~~Av~---~vg~~---g~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~ 213 (541)
T PRK12851 142 AEIAQVATISA-NGDAEIGRLVAEAME---KVGNE---GVITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEA 213 (541)
T ss_pred HHHHHHHHHhc-cChHHHHHHHHHHHH---Hhccc---CceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeE
Confidence 133333332 122333333222110 11211 112444443 5677899999999998887774 899
Q ss_pred ccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCC--
Q psy16434 601 QQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGL-- 678 (745)
Q Consensus 601 ~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gI-- 678 (745)
.+++++|++++++++ +++ .+..+++.|.+.|++|||++++|+|.|+++|.++||
T Consensus 214 ~~~~~~Ilv~d~~i~-------------~~~-----------~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g 269 (541)
T PRK12851 214 ELEDPYILIHEKKIS-------------NLQ-----------DLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRG 269 (541)
T ss_pred EecccEEEEEcCCcC-------------cHH-----------HHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcC
Confidence 999999999999853 222 266779999999999999999999999999999997
Q ss_pred ----eEEEe-----CCHHHHHHHHHHhCCeecc-----cCCCCCCCCCcccCCceEecccccCccccc
Q psy16434 679 ----MGVRL-----NSKFDLRRLCKAVNATALP-----RLVSTYIKMPSFCPAPPVQGRERDRPAQTC 732 (745)
Q Consensus 679 ----l~ir~-----v~k~dLeRIaraTGA~ivs-----sld~l~~~~LG~c~~~~~~~~e~~~~~~~~ 732 (745)
+++++ +++++|+|||++|||++++ +++++.+++||+|+.|+++. |+|.+...|
T Consensus 270 ~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~-~~~~~i~~~ 336 (541)
T PRK12851 270 GLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK-ENTTIIDGA 336 (541)
T ss_pred ceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc-ceEEEEcCC
Confidence 89997 9999999999999999999 78888888999999999966 666544333
|
|
| >TIGR02348 GroEL chaperonin GroL | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-18 Score=196.01 Aligned_cols=233 Identities=16% Similarity=0.160 Sum_probs=177.6
Q ss_pred CCC----CcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH---
Q psy16434 460 TPP----AASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF--- 529 (745)
Q Consensus 460 ~~p----~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I--- 529 (745)
+|| .++.+.+++..|++++|| |++++|+++.+ ..+..++-.|. |..|+++++++++.+++.|+.....+
T Consensus 61 ~hp~~~~~akll~~~a~~qd~e~GDGTTtvviLa~~Ll-~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~ 139 (524)
T TIGR02348 61 EDKFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIV-KEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGK 139 (524)
T ss_pred CChhhHHHHHHHHHHHHccCceeCCCcchHHHHHHHHH-HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 677 789999999999999999 88889999988 77888888887 88999999999999999998764311
Q ss_pred --HHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccc-cccccchhhHhhhhhhcchh-------h
Q psy16434 530 --VKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGI-LDLYLTKMWALKYATSAANT-------I 599 (745)
Q Consensus 530 --Pr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI-~Ds~lVkG~vL~~A~e~a~m-------i 599 (745)
-..++..+. ...+.++++...... .+|-+ +.+.+.+ +++. .|+.+++|+++++...+..| +
T Consensus 140 ~~l~~va~ts~-~~~~~l~~lv~~A~~---~v~~~---~~i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~ 210 (524)
T TIGR02348 140 KEIAQVATISA-NNDEEIGSLIAEAME---KVGKD---GVITVEE--SKSLETELEVVEGMQFDRGYISPYFVTDAEKME 210 (524)
T ss_pred HHHHHHHHHhc-cChHHHHHHHHHHHH---HhCcC---CcEeeec--CCCccccEEEEEeEEEcCCCCCcccccCccCCe
Confidence 122222221 122333333222110 11111 1112222 3444 56899999999988777754 7
Q ss_pred cccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHc---
Q psy16434 600 LQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKY--- 676 (745)
Q Consensus 600 l~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~--- 676 (745)
..+++|+|+++++++ +++++ +..++++|++.|++|||++++|+|.|+++|.++
T Consensus 211 ~~~~n~~Ili~d~~i-------------~~~~~-----------i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~ 266 (524)
T TIGR02348 211 VELENPYILITDKKI-------------SNIKD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLR 266 (524)
T ss_pred EEeeCceeeeccCCc-------------CCHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcc
Confidence 889999999999964 24443 467788999999999999999999999999997
Q ss_pred ---CCeEEEeCCH-----HHHHHHHHHhCCeecc-----cCCCCCCCCCcccCCceEecccccC
Q psy16434 677 ---GLMGVRLNSK-----FDLRRLCKAVNATALP-----RLVSTYIKMPSFCPAPPVQGRERDR 727 (745)
Q Consensus 677 ---gIl~ir~v~k-----~dLeRIaraTGA~ivs-----sld~l~~~~LG~c~~~~~~~~e~~~ 727 (745)
||+++|++++ ++|+|||++|||++++ +++++.+++||+|+.|++.. ++|.
T Consensus 267 ~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~-~~~~ 329 (524)
T TIGR02348 267 GTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK-DNTT 329 (524)
T ss_pred cccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee-cEEE
Confidence 8999998865 8999999999999999 89999999999999999864 3443
|
This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118. |
| >cd03333 chaperonin_like chaperonin_like superfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=5e-18 Score=173.10 Aligned_cols=126 Identities=26% Similarity=0.299 Sum_probs=117.1
Q ss_pred CCcceeecccccccccccchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHH
Q psy16434 566 ENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLE 645 (745)
Q Consensus 566 ~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~ 645 (745)
+.+++++.+|+++.|+.+++|+++++...+..|+.++++|+|+++++|||+
T Consensus 44 ~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~~~n~~Ill~~~~le~----------------------------- 94 (209)
T cd03333 44 GVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRLENAKILLLDCPLEY----------------------------- 94 (209)
T ss_pred HHEEEEEecCcChhhceeEeeEEEeccccCCCCCeEcCCCcEEEEeCCeeE-----------------------------
Confidence 345899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cc
Q psy16434 646 EQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GR 723 (745)
Q Consensus 646 ~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~ 723 (745)
||+++++|++.|++||.++||++++++++++|+|||++|||+++++++++.++.||+|+.|++. |.
T Consensus 95 ------------vii~~~~I~~~al~~l~~~~I~~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~ 162 (209)
T cd03333 95 ------------VVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGE 162 (209)
T ss_pred ------------EEEecCcccHHHHHHHHHCCCEEEEeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999996 56
Q ss_pred cccCccccc
Q psy16434 724 ERDRPAQTC 732 (745)
Q Consensus 724 e~~~~~~~~ 732 (745)
++|.+-..|
T Consensus 163 ~~~~~~~~~ 171 (209)
T cd03333 163 EKLTFIEGC 171 (209)
T ss_pred eEEEEEEcC
Confidence 666544433
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. |
| >PTZ00114 Heat shock protein 60; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.3e-18 Score=195.81 Aligned_cols=228 Identities=14% Similarity=0.085 Sum_probs=181.1
Q ss_pred CCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH-----HHH
Q psy16434 461 PPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF-----VKT 532 (745)
Q Consensus 461 ~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I-----Pr~ 532 (745)
+|.++++-+++..|++++|| |++++|+++.+ ..+..++-.|. |..|+++++++.+.++..|+.....+ -..
T Consensus 79 ~~~a~ll~~~a~~qd~evGDGTTtvvvLa~~LL-~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~ 157 (555)
T PTZ00114 79 NVGAQLIRQVASKTNDKAGDGTTTATILARAIF-REGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILN 157 (555)
T ss_pred hHHHHHHHHHHHhhccccCCcccHHHHHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHH
Confidence 44899999999999999999 88889999988 77777888887 88999999999999999998765421 122
Q ss_pred HHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccccc-ccchhhHhhhhhhcch-------hhccccc
Q psy16434 533 LAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDL-YLTKMWALKYATSAAN-------TILQQTK 604 (745)
Q Consensus 533 LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds-~lVkG~vL~~A~e~a~-------mil~IDn 604 (745)
++..+. ...+.++++....- ..+|-| + .|....++++.|+ .+++|+++++...+.. |+..+++
T Consensus 158 va~ts~-~~~~~l~~li~eAv---~~vg~~---g--~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~ 228 (555)
T PTZ00114 158 VATISA-NGDVEIGSLIADAM---DKVGKD---G--TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELEN 228 (555)
T ss_pred HHHHHc-CChHHHHHHHHHHH---HHhCcC---C--cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecC
Confidence 332221 12233344433211 112211 3 4677788999998 6999999988877665 4788999
Q ss_pred ceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcC------C
Q psy16434 605 AKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYG------L 678 (745)
Q Consensus 605 ~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~g------I 678 (745)
|+|++++++|+ ++++ +..++++|++.|++|+|++++|++.|+++|.+++ |
T Consensus 229 ~~Ili~d~~L~-------------~~~~-----------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i 284 (555)
T PTZ00114 229 PLILVTDKKIS-------------SIQS-----------ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKV 284 (555)
T ss_pred CEEEEEcCCCC-------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEE
Confidence 99999999997 2232 5566789999999999999999999999999996 9
Q ss_pred eEEEe-----CCHHHHHHHHHHhCCeecccC------CCCCCCCCcccCCceEec
Q psy16434 679 MGVRL-----NSKFDLRRLCKAVNATALPRL------VSTYIKMPSFCPAPPVQG 722 (745)
Q Consensus 679 l~ir~-----v~k~dLeRIaraTGA~ivssl------d~l~~~~LG~c~~~~~~~ 722 (745)
+++++ +++++|+|||++|||+++++. +++.++.||+|+.|++..
T Consensus 285 ~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~ 339 (555)
T PTZ00114 285 CAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK 339 (555)
T ss_pred EEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe
Confidence 99988 778999999999999999998 777888899999999976
|
|
| >PRK12850 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-17 Score=193.62 Aligned_cols=237 Identities=16% Similarity=0.153 Sum_probs=178.7
Q ss_pred CCCC----cccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHHH--
Q psy16434 460 TPPA----ASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVFV-- 530 (745)
Q Consensus 460 ~~p~----a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~IP-- 530 (745)
+||. ++++-+++.-|++++|| |++++|.++.+ ..+..++-.|. |..|+++++++++.+++.|+.....+.
T Consensus 63 ~hp~~~~ga~ll~~~a~~qd~e~GDGTTt~viLa~~LL-~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~ 141 (544)
T PRK12850 63 EDKFENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIV-REGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSS 141 (544)
T ss_pred CChhhhHHHHHHHHHHhhhcchhcCCcchHHHHHHHHH-HHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 6788 78888999999999999 88889999988 77778888887 889999999999999999987654110
Q ss_pred ---HHHHhhccchhhHHHHHHHHHhhc--CCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchh-------
Q psy16434 531 ---KTLAENTGVKSNEVISKLYSAHNE--GKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANT------- 598 (745)
Q Consensus 531 ---r~LaeNAGld~~~vlsKL~~~h~~--g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~m------- 598 (745)
..++..+ ....+.++++....-. +... -+|++.+ +..+ .|+.+++|+++++...+..|
T Consensus 142 ~~l~~va~~s-~~~~~~l~~lv~eAv~~vg~~g-~i~v~~~-----~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~ 211 (544)
T PRK12850 142 KEIAQVATIS-ANGDESIGEMIAEAMDKVGKEG-VITVEEA-----KTLG---TELDVVEGMQFDRGYLSPYFVTNPEKM 211 (544)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHHhcccC-ceeeEEc-----cccC---cceEEEEeEEecCccCcCccccccccC
Confidence 1122222 1123334444332110 1000 1222211 1222 68899999999888777654
Q ss_pred hcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCC
Q psy16434 599 ILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGL 678 (745)
Q Consensus 599 il~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gI 678 (745)
+..+++++|+++++.+ ++++ .+..++++|++.|++|||++++|+|.|+++|.++||
T Consensus 212 ~~~~~n~~Ill~d~~i-------------~~~~-----------~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i 267 (544)
T PRK12850 212 RAELEDPYILLHEKKI-------------SNLQ-----------DLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKL 267 (544)
T ss_pred eEEEeCCEEEEEeccc-------------CCHH-----------HHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCC
Confidence 7889999999999954 2222 277789999999999999999999999999999999
Q ss_pred ------eEEEe-----CCHHHHHHHHHHhCCeecc-----cCCCCCCCCCcccCCceEecccccCccccc
Q psy16434 679 ------MGVRL-----NSKFDLRRLCKAVNATALP-----RLVSTYIKMPSFCPAPPVQGRERDRPAQTC 732 (745)
Q Consensus 679 ------l~ir~-----v~k~dLeRIaraTGA~ivs-----sld~l~~~~LG~c~~~~~~~~e~~~~~~~~ 732 (745)
+++++ +++++|+|||++|||++++ +++++.+++||+|+.|++.. ++|.+...|
T Consensus 268 ~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~-~~~~~i~g~ 336 (544)
T PRK12850 268 RGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK-ENTTIIDGA 336 (544)
T ss_pred cccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe-eeEEEEeCC
Confidence 99998 9999999999999999999 78899988999999999864 555544433
|
|
| >KOG0230|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-16 Score=191.02 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=143.4
Q ss_pred eecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHH
Q psy16434 562 DINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEE 641 (745)
Q Consensus 562 Dl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~ 641 (745)
+...+.++++++.++...|+.+++|+|+.+++.+..|..++.+++|+++.++|+|++... ....++.++.||.
T Consensus 358 md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~leyqrisn-------~lsS~etvlqqE~ 430 (1598)
T KOG0230|consen 358 MDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLEYQRISN-------QLSSIETVLQQEK 430 (1598)
T ss_pred cCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchhhhhhhc-------cccchHHHHhhHH
Confidence 333455799999999999999999999999999999999999999999999999999775 3456778888899
Q ss_pred HHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe
Q psy16434 642 NQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ 721 (745)
Q Consensus 642 ~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~ 721 (745)
++++.+|.+|....+|+++++++|++.|+++|...||..+-++|+.-|+||+|+|||.|++++|.+...+||+|+.|++.
T Consensus 431 e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~tga~I~~siDslt~~klg~C~~F~v~ 510 (1598)
T KOG0230|consen 431 EYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRCTGADIVPSVDSLTSQKLGYCELFRVE 510 (1598)
T ss_pred HHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHHhcCceecchhhhhccccCCCccHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999995
|
|
| >PRK12852 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-17 Score=187.03 Aligned_cols=229 Identities=14% Similarity=0.132 Sum_probs=174.4
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH-----HH
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF-----VK 531 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I-----Pr 531 (745)
+||.++++.+++.-|++++|| |++++|+++.+ ..+..++-.|. |..|+++++.+++.+++.|+.....+ ..
T Consensus 67 ~~p~akll~e~a~~q~~e~GDGTTtvvvLa~eLL-~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~ 145 (545)
T PRK12852 67 ENMGAQMVREVASKTNDLAGDGTTTATVLAQAIV-REGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIA 145 (545)
T ss_pred cChHHHHHHHHHhhcCceecCCcchHHHHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHH
Confidence 689999999999999999999 88889999988 77777888887 77899999999999999998765311 12
Q ss_pred HHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccc-cccccchhhHhhhhhhcch-------hhcccc
Q psy16434 532 TLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGI-LDLYLTKMWALKYATSAAN-------TILQQT 603 (745)
Q Consensus 532 ~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI-~Ds~lVkG~vL~~A~e~a~-------mil~ID 603 (745)
.++..+. ...+.+.++...... .+|-+ +.+.+. .++++ .|+.+++|+.+++...+.. |+..++
T Consensus 146 ~va~~s~-~~~~~l~~li~eA~~---~vg~~---g~i~v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~ 216 (545)
T PRK12852 146 QVGTISA-NGDAAIGKMIAQAMQ---KVGNE---GVITVE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELD 216 (545)
T ss_pred HHHhhhc-CChHHHHHHHHHHHH---HhccC---Cceeee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEec
Confidence 2222221 112333333322110 11111 111222 14444 6888999999987766653 788899
Q ss_pred cceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHc------C
Q psy16434 604 KAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKY------G 677 (745)
Q Consensus 604 n~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~------g 677 (745)
+++|+++++.+ ++++ .+..+++.|++.|++|||++++|+|.|+++|..+ +
T Consensus 217 n~~Ili~d~~i-------------~~~~-----------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~ 272 (545)
T PRK12852 217 DAYILLHEKKL-------------SGLQ-----------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLK 272 (545)
T ss_pred CceEEEecCcc-------------CCHH-----------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccce
Confidence 99999998744 2332 5666789999999999999999999999999986 8
Q ss_pred CeEEEeCC-----HHHHHHHHHHhCCeecc-----cCCCCCCCCCcccCCceEec
Q psy16434 678 LMGVRLNS-----KFDLRRLCKAVNATALP-----RLVSTYIKMPSFCPAPPVQG 722 (745)
Q Consensus 678 Il~ir~v~-----k~dLeRIaraTGA~ivs-----sld~l~~~~LG~c~~~~~~~ 722 (745)
|+++|+.+ +++|+|||++|||++++ +++++..++||+|+.|++..
T Consensus 273 i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~ 327 (545)
T PRK12852 273 VAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK 327 (545)
T ss_pred EEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc
Confidence 99999877 99999999999999999 78999989999999999965
|
|
| >PLN03167 Chaperonin-60 beta subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-16 Score=183.53 Aligned_cols=228 Identities=14% Similarity=0.124 Sum_probs=176.1
Q ss_pred CCCC----cccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHHH--
Q psy16434 460 TPPA----ASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVFV-- 530 (745)
Q Consensus 460 ~~p~----a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~IP-- 530 (745)
+||. ++++-+++.-|++++|| |++++|+++.+ ..+..++-.|. |..|+++++++.+.+++.|+.....++
T Consensus 118 ~hP~~~~gakll~~~a~~qd~evGDGTTTvvVLa~~LL-~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~ 196 (600)
T PLN03167 118 EDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLI-AEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDS 196 (600)
T ss_pred CCchhhHHHHHHHHHHHhhhhhhCCCccHHHHHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 5674 78999999999999999 88899999988 77788888887 889999999999999999987643221
Q ss_pred --HHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccccc-ccchhhHhhhhhhcc-------hhhc
Q psy16434 531 --KTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDL-YLTKMWALKYATSAA-------NTIL 600 (745)
Q Consensus 531 --r~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds-~lVkG~vL~~A~e~a-------~mil 600 (745)
..++..+.- ....+.++....- ..+|- .+ .+.--.++++.|+ .+++|+++++...+. .|++
T Consensus 197 ~L~~vA~tS~~-~~~~i~~liaeAv---~~Vg~---~g--~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~ 267 (600)
T PLN03167 197 ELADVAAVSAG-NNYEVGNMIAEAM---SKVGR---KG--VVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSV 267 (600)
T ss_pred HHHHHHHHhcc-CcHHHHHHHHHHH---HHhcc---CC--cEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeE
Confidence 222222211 1123333322111 01121 11 1111146788887 799999999887777 7899
Q ss_pred ccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHH------
Q psy16434 601 QQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLN------ 674 (745)
Q Consensus 601 ~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~------ 674 (745)
.++||+|+++++. +++++++.+++ +++.+.|+++|++.++|++.|+++|.
T Consensus 268 ~l~np~Ill~d~~-------------i~~~~~l~~~l-----------e~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g 323 (600)
T PLN03167 268 EYDNCKLLLVDKK-------------ITNARDLIGIL-----------EDAIRGGYPLLIIAEDIEQEALATLVVNKLRG 323 (600)
T ss_pred EEeCCEEEEEccc-------------cCCHHHHHHHH-----------HHHHHhCcCEEEEcCCCCHHHHHHHHHhhccc
Confidence 9999999999974 46777777765 36777999999999999999999999
Q ss_pred HcCCeEEEeCC-----HHHHHHHHHHhCCeecc-----cCCCCCCCCCcccCCceEe
Q psy16434 675 KYGLMGVRLNS-----KFDLRRLCKAVNATALP-----RLVSTYIKMPSFCPAPPVQ 721 (745)
Q Consensus 675 k~gIl~ir~v~-----k~dLeRIaraTGA~ivs-----sld~l~~~~LG~c~~~~~~ 721 (745)
..+|+++|+.+ +++|+|||++|||++++ +++++..+.||+|+.|++.
T Consensus 324 ~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~ 380 (600)
T PLN03167 324 SLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLT 380 (600)
T ss_pred cceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEe
Confidence 89999999996 88999999999999999 7888888999999999984
|
|
| >PRK14104 chaperonin GroEL; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-16 Score=181.31 Aligned_cols=238 Identities=17% Similarity=0.159 Sum_probs=175.3
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH-----HH
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF-----VK 531 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I-----Pr 531 (745)
+||.++++-+++..|++++|| |++++|+++.+ ..+..++-.|. |..++++++++++.++..|+.....+ ..
T Consensus 67 ~~pgakll~e~a~~qd~e~GDGTTTvvvLa~~LL-~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~ 145 (546)
T PRK14104 67 ENMGAQMVREVASKSADAAGDGTTTATVLAQAIV-REGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIA 145 (546)
T ss_pred cChHHHHHHHHHHhhcccccCcccHHHHHHHHHH-HHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHH
Confidence 589999999999999999999 88899999988 77777888887 77899999999999999998765421 12
Q ss_pred HHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccc-cccccchhhHhhhhhhcchh-------hcccc
Q psy16434 532 TLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGI-LDLYLTKMWALKYATSAANT-------ILQQT 603 (745)
Q Consensus 532 ~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI-~Ds~lVkG~vL~~A~e~a~m-------il~ID 603 (745)
.++..+.- ..+.+.++....- ..+|-+ +.+.+.+ ..+. .|+.+++|+++++...+..| ...++
T Consensus 146 ~va~~s~~-~d~~i~~lv~~Av---~~vg~~---g~i~v~~--~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~ 216 (546)
T PRK14104 146 QVGTISAN-GDAEIGKFLADAM---KKVGNE---GVITVEE--AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMD 216 (546)
T ss_pred HHHHHHhc-CchHHHHHHHHHH---HHhccC---CceeeEe--cccccceEEEEEEEEEeCCCCCcchhcCcccCceeee
Confidence 22222211 1122333322111 011211 1112221 1234 47888999999877776644 56678
Q ss_pred cceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHH------cC
Q psy16434 604 KAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNK------YG 677 (745)
Q Consensus 604 n~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k------~g 677 (745)
+++|++++.. ++++++ +..+++.|.+.|++|||++++|++.|+++|.. .|
T Consensus 217 ~~~Ilv~d~~-------------i~~~~~-----------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~ 272 (546)
T PRK14104 217 DAYILINEKK-------------LSSLNE-----------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLK 272 (546)
T ss_pred CcEEEEehhh-------------hcCHHH-----------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceee
Confidence 8999888722 334432 56779999999999999999999999999995 68
Q ss_pred CeEEEeCC-----HHHHHHHHHHhCCeeccc-----CCCCCCCCCcccCCceEecccccCccccc
Q psy16434 678 LMGVRLNS-----KFDLRRLCKAVNATALPR-----LVSTYIKMPSFCPAPPVQGRERDRPAQTC 732 (745)
Q Consensus 678 Il~ir~v~-----k~dLeRIaraTGA~ivss-----ld~l~~~~LG~c~~~~~~~~e~~~~~~~~ 732 (745)
|+++++++ +++|+|||++|||+++++ ++++..++||+|+.+++ +++++.....|
T Consensus 273 i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~-~~~~~~~i~g~ 336 (546)
T PRK14104 273 VAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMI-DKENTTIVNGA 336 (546)
T ss_pred EEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEE-cCCEEEEEeCC
Confidence 99998888 899999999999999999 89999999999999997 55666655444
|
|
| >CHL00093 groEL chaperonin GroEL | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-16 Score=181.44 Aligned_cols=233 Identities=15% Similarity=0.146 Sum_probs=168.2
Q ss_pred CCCCcc----cccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHHH--
Q psy16434 460 TPPAAS----ELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVFV-- 530 (745)
Q Consensus 460 ~~p~a~----~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~IP-- 530 (745)
+||.++ ++-++..-+++++|| |++++|+++.+ ..+..++-+|. |..|+++++++++.+++.++.....+.
T Consensus 62 ~hp~a~~g~~li~~~a~~~~~e~GDGTTtvvvLa~eLL-~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~ 140 (529)
T CHL00093 62 EDHIENTGVALIRQAASKTNDVAGDGTTTATVLAYAIV-KQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDI 140 (529)
T ss_pred cCHHHHHHHHHHHHHHHhcCceecCCCCHHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 778875 455576666669999 88899999988 77888888887 899999999999999999987653211
Q ss_pred ---HHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecc--cccccccccchhhHhhhhhhcchh---hc--
Q psy16434 531 ---KTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAA--EAGILDLYLTKMWALKYATSAANT---IL-- 600 (745)
Q Consensus 531 ---r~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~--g~gI~Ds~lVkG~vL~~A~e~a~m---il-- 600 (745)
..++..+. ...+.+++|....- ..+|-+ + ..+.. ++...++.+++|+++++...+..| ++
T Consensus 141 ~~L~~VA~ts~-~~~~~l~~lv~eAv---~~vg~~---g---~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~ 210 (529)
T CHL00093 141 QAITQVASISA-GNDEEVGSMIADAI---EKVGRE---G---VISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERM 210 (529)
T ss_pred HHHHHHHHHhc-cChHHHHHHHHHHH---HHhccC---C---ceeecCCCccceeeEEEeeEEecCccCcCccccCCccc
Confidence 11222221 12333333332211 011111 1 11121 223566788999999877665543 33
Q ss_pred --ccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccH--HHHHHHHH-
Q psy16434 601 --QQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGD--MALHYLNK- 675 (745)
Q Consensus 601 --~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d--~al~~L~k- 675 (745)
.++||+|++++++||+.+ ..+..+++.|.+.|+++|+++++|++ ++.+|+++
T Consensus 211 ~~~l~n~~Ili~d~~le~~~-----------------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~ 267 (529)
T CHL00093 211 EVVQENPYILLTDKKITLVQ-----------------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKL 267 (529)
T ss_pred eEEecCceehhhcCCCCchH-----------------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhh
Confidence 489999999999998643 23777889999999999999999999 55555588
Q ss_pred ---cCCeEEEeCC-----HHHHHHHHHHhCCeecc-----cCCCCCCCCCcccCCceEecccccC
Q psy16434 676 ---YGLMGVRLNS-----KFDLRRLCKAVNATALP-----RLVSTYIKMPSFCPAPPVQGRERDR 727 (745)
Q Consensus 676 ---~gIl~ir~v~-----k~dLeRIaraTGA~ivs-----sld~l~~~~LG~c~~~~~~~~e~~~ 727 (745)
+||+++|+++ +++|+|||++|||++++ +++++.+.+||+|+.+++.. ++++
T Consensus 268 ~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~-~~~~ 331 (529)
T CHL00093 268 RGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK-DSTT 331 (529)
T ss_pred cccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec-CEEE
Confidence 5999999995 48899999999999999 79999999999999999863 3443
|
|
| >KOG0357|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.4e-14 Score=147.09 Aligned_cols=83 Identities=27% Similarity=0.334 Sum_probs=79.5
Q ss_pred HHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--
Q psy16434 644 LEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ-- 721 (745)
Q Consensus 644 i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~-- 721 (745)
++++++.+++.|+++++||||+||.|.|+|.+++.-++|||...++|-||.+|||+||+||+++++++||+|+.|++.
T Consensus 144 f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sf 223 (400)
T KOG0357|consen 144 FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISF 223 (400)
T ss_pred HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEec
Confidence 888999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ccccc
Q psy16434 722 GRERD 726 (745)
Q Consensus 722 ~~e~~ 726 (745)
|-+|.
T Consensus 224 gttkd 228 (400)
T KOG0357|consen 224 GTTKD 228 (400)
T ss_pred ccccc
Confidence 55554
|
|
| >KOG0230|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.4e-07 Score=109.74 Aligned_cols=147 Identities=18% Similarity=0.290 Sum_probs=127.1
Q ss_pred ChhhHHHHHHHHHHhhcCCC--CCCCCc-cceEEEEccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCc
Q psy16434 379 NEDFLTDLITKACVSILPDG--SSSFNV-DNVRITKILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDI 453 (745)
Q Consensus 379 ~~~~ls~LivdAv~~v~~~~--~~~~dl-~~I~I~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~ 453 (745)
|.+.+..|+.+|...+.|+. ++.+|+ ++|+|.+|.||+..||+++.|+++.+...+ |..+.++|+|+++.++|++
T Consensus 333 W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~ley 412 (1598)
T KOG0230|consen 333 WLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLEY 412 (1598)
T ss_pred HHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchhh
Confidence 46889999999999998873 455666 799999999999999999999999999876 6889999999999999999
Q ss_pred cccccC--------------------------------------------------------------------------
Q psy16434 454 ATTETK-------------------------------------------------------------------------- 459 (745)
Q Consensus 454 ~k~e~k-------------------------------------------------------------------------- 459 (745)
.+...+
T Consensus 413 qrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~tga~I~~s 492 (1598)
T KOG0230|consen 413 QRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRCTGADIVPS 492 (1598)
T ss_pred hhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHHhcCceecc
Confidence 876432
Q ss_pred -CCCCcccccccccEEEEEEC-----CeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHH
Q psy16434 460 -TPPAASELGYADSVAVDELG-----DTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGIT 526 (745)
Q Consensus 460 -~~p~a~~LG~a~~vq~~eiG-----dtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~ 526 (745)
+.++...||+|..++.+++- .+++++|+||.. ..++||++||....+++++++-++-++-+.-...
T Consensus 493 iDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~-~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~ 564 (1598)
T KOG0230|consen 493 VDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPK-PLGCTILLRGDSLEELKKVKHVVQYLVFAAYHLA 564 (1598)
T ss_pred hhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCC-CCCceEEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777889999999888875 378999999987 8999999999999999999999988887776543
|
|
| >PHA00616 hypothetical protein | Back alignment and domain information |
|---|
Probab=88.47 E-value=0.31 Score=38.06 Aligned_cols=38 Identities=29% Similarity=0.440 Sum_probs=33.1
Q ss_pred eeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEee
Q psy16434 41 TYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVIS 80 (745)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (745)
+|||+.|+. .|...-+-.+|+.+||-..|-.-.+|.|+
T Consensus 1 pYqC~~CG~--~F~~~s~l~~H~r~~hg~~~~~~~~~y~~ 38 (44)
T PHA00616 1 MYQCLRCGG--IFRKKKEVIEHLLSVHKQNKLTLEYFYIY 38 (44)
T ss_pred CCccchhhH--HHhhHHHHHHHHHHhcCCCccceeEEEEE
Confidence 699999986 58899999999999999988877777765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 745 | ||||
| 3iyg_Q | 512 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 6e-75 | ||
| 3iyg_Q | 512 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 3e-38 | ||
| 3p9d_H | 568 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 9e-48 | ||
| 3p9d_H | 568 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 4e-31 | ||
| 3los_A | 543 | Atomic Model Of Mm-Cpn In The Closed State Length = | 3e-26 | ||
| 3los_A | 543 | Atomic Model Of Mm-Cpn In The Closed State Length = | 3e-11 | ||
| 3rus_A | 543 | Crystal Structure Of Cpn-Rls In Complex With Adp Fr | 3e-26 | ||
| 3rus_A | 543 | Crystal Structure Of Cpn-Rls In Complex With Adp Fr | 3e-11 | ||
| 3izi_A | 513 | Mm-Cpn Rls With Atp Length = 513 | 3e-26 | ||
| 3izi_A | 513 | Mm-Cpn Rls With Atp Length = 513 | 3e-11 | ||
| 3izh_A | 513 | Mm-Cpn D386a With Atp Length = 513 | 4e-26 | ||
| 3izh_A | 513 | Mm-Cpn D386a With Atp Length = 513 | 3e-11 | ||
| 3iyf_A | 521 | Atomic Model Of The Lidless Mm-Cpn In The Open Stat | 6e-25 | ||
| 3izk_A | 491 | Mm-Cpn Rls Deltalid With Atp Length = 491 | 6e-25 | ||
| 3j02_A | 491 | Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun | 8e-25 | ||
| 3izn_A | 491 | Mm-Cpn Deltalid With Atp Length = 491 | 8e-25 | ||
| 1a6d_A | 545 | Thermosome From T. Acidophilum Length = 545 | 3e-24 | ||
| 1a6d_A | 545 | Thermosome From T. Acidophilum Length = 545 | 1e-08 | ||
| 1q3s_A | 548 | Crystal Structure Of The Chaperonin From Thermococc | 8e-23 | ||
| 1q3s_A | 548 | Crystal Structure Of The Chaperonin From Thermococc | 4e-14 | ||
| 1q3r_A | 548 | Crystal Structure Of The Chaperonin From Thermococc | 1e-22 | ||
| 1q3r_A | 548 | Crystal Structure Of The Chaperonin From Thermococc | 4e-14 | ||
| 1q2v_A | 548 | Crystal Structure Of The Chaperonin From Thermococc | 2e-22 | ||
| 1q2v_A | 548 | Crystal Structure Of The Chaperonin From Thermococc | 4e-14 | ||
| 3iyg_D | 518 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 1e-21 | ||
| 3ko1_A | 553 | Cystal Structure Of Thermosome From Acidianus Tengc | 3e-21 | ||
| 3ko1_A | 553 | Cystal Structure Of Thermosome From Acidianus Tengc | 1e-07 | ||
| 3iyg_E | 515 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 7e-20 | ||
| 3iyg_E | 515 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 5e-07 | ||
| 1a6d_B | 543 | Thermosome From T. Acidophilum Length = 543 | 1e-19 | ||
| 1a6d_B | 543 | Thermosome From T. Acidophilum Length = 543 | 9e-11 | ||
| 3p9d_D | 528 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 2e-19 | ||
| 3p9d_C | 590 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 2e-18 | ||
| 3iyg_A | 529 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 3e-18 | ||
| 3iyg_A | 529 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 7e-07 | ||
| 3iyg_A | 529 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 9e-07 | ||
| 3iyg_G | 515 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 5e-18 | ||
| 3p9d_E | 562 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 9e-16 | ||
| 3p9d_E | 562 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 9e-07 | ||
| 3p9d_A | 559 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 3e-15 | ||
| 3p9d_A | 559 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 3e-04 | ||
| 3aq1_B | 500 | Open State Monomer Of A Group Ii Chaperonin From Me | 3e-15 | ||
| 3aq1_B | 500 | Open State Monomer Of A Group Ii Chaperonin From Me | 3e-10 | ||
| 3iyg_H | 515 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 3e-14 | ||
| 3iyg_H | 515 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 6e-04 | ||
| 3iyg_B | 513 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 2e-12 | ||
| 3iyg_B | 513 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 2e-04 | ||
| 3p9d_G | 550 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 3e-11 | ||
| 3p9d_G | 550 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 1e-04 | ||
| 1e0r_B | 159 | Beta-Apical Domain Of Thermosome Length = 159 | 7e-11 | ||
| 3p9d_B | 527 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 3e-10 | ||
| 3p9d_B | 527 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 9e-07 | ||
| 3iyg_Z | 517 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 6e-10 | ||
| 3iyg_Z | 517 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 5e-05 | ||
| 1ass_A | 159 | Apical Domain Of The Chaperonin From Thermoplasma A | 8e-09 | ||
| 3p9d_F | 546 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 1e-07 | ||
| 3rtk_A | 546 | Crystal Structure Of Cpn60.2 From Mycobacterium Tub | 2e-04 |
| >pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 | Back alignment and structure |
|
| >pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 | Back alignment and structure |
|
| >pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 | Back alignment and structure |
|
| >pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 | Back alignment and structure |
|
| >pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 | Back alignment and structure |
|
| >pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 | Back alignment and structure |
|
| >pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 | Back alignment and structure |
|
| >pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 | Back alignment and structure |
|
| >pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 | Back alignment and structure |
|
| >pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 | Back alignment and structure |
|
| >pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 | Back alignment and structure |
|
| >pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 | Back alignment and structure |
|
| >pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 | Back alignment and structure |
|
| >pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 | Back alignment and structure |
|
| >pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 | Back alignment and structure |
|
| >pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 | Back alignment and structure |
|
| >pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 | Back alignment and structure |
|
| >pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 | Back alignment and structure |
|
| >pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 | Back alignment and structure |
|
| >pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 | Back alignment and structure |
|
| >pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 | Back alignment and structure |
|
| >pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 | Back alignment and structure |
|
| >pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 | Back alignment and structure |
|
| >pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 | Back alignment and structure |
|
| >pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 | Back alignment and structure |
|
| >pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 | Back alignment and structure |
|
| >pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 | Back alignment and structure |
|
| >pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 | Back alignment and structure |
|
| >pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 | Back alignment and structure |
|
| >pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 | Back alignment and structure |
|
| >pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 | Back alignment and structure |
|
| >pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 | Back alignment and structure |
|
| >pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 | Back alignment and structure |
|
| >pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 | Back alignment and structure |
|
| >pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 | Back alignment and structure |
|
| >pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 | Back alignment and structure |
|
| >pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 | Back alignment and structure |
|
| >pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 | Back alignment and structure |
|
| >pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 | Back alignment and structure |
|
| >pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 | Back alignment and structure |
|
| >pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 | Back alignment and structure |
|
| >pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 | Back alignment and structure |
|
| >pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 | Back alignment and structure |
|
| >pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 | Back alignment and structure |
|
| >pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 | Back alignment and structure |
|
| >pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 | Back alignment and structure |
|
| >pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 | Back alignment and structure |
|
| >pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 | Back alignment and structure |
|
| >pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 | Back alignment and structure |
|
| >pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 | Back alignment and structure |
|
| >pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 | Back alignment and structure |
|
| >pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 | Back alignment and structure |
|
| >pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 | Back alignment and structure |
|
| >pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 | Back alignment and structure |
|
| >pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 | Back alignment and structure |
|
| >pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 | Back alignment and structure |
|
| >pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 | Back alignment and structure |
|---|
Score = 302 bits (777), Expect = 1e-94
Identities = 151/281 (53%), Positives = 190/281 (67%), Gaps = 45/281 (16%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
KHFSGLEEAVYRNI ACK+ A T RTAYGPNGMNK+VINH++KLFVTNDAATI+RELE++
Sbjct: 4 KHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQ 63
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPAAK+I+ M S MQE+
Sbjct: 64 HPAAKMIV---------------------------------MA-----------SHMQEQ 79
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
E+GDGTNFV++FAGALL A+ LLR+GL+ SE++ GY++A K EILP L C K++R
Sbjct: 80 EVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLR 139
Query: 360 NVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN 419
+V+ V+ + +++MSKQYGNE FL LI +ACVSI PD S FNVDN+R+ KILGSG+ +
Sbjct: 140 DVDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFPD-SGHFNVDNIRVCKILGSGVHS 198
Query: 420 SEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETKT 460
S ++ GMVFK+ EGD+T AKIAVY+CP D TETK
Sbjct: 199 SSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKG 239
|
| >3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 4e-40
Identities = 85/220 (38%), Positives = 112/220 (50%), Gaps = 56/220 (25%)
Query: 426 MVFKRSVEGD---ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTA 482
M+ + + + D + K A + E+G+ DSV + E+GDT
Sbjct: 295 MLVRLNSKWDLRRLCKTVGATA--------LPRLNPPVL---EEMGHCDSVYLSEVGDTQ 343
Query: 483 VVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK--------------- 527
VVVFK E + I+T+V+RG+T+N MDDIERAVDDGVNTFK +T+
Sbjct: 344 VVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIEL 403
Query: 528 ---------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYG 560
+ LAEN+GVK+NEVISKLY+ H EG K G
Sbjct: 404 AKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVG 463
Query: 561 FDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
DI E +V D EAG+LD YL K WA+K AT+AA T+L
Sbjct: 464 LDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVL 503
|
| >3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 1e-39
Identities = 75/102 (73%), Positives = 84/102 (82%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIAVY+CP D TETKGTVLIKSA+ELM FS+GEEN ++ Q+KAIADTGANVVV G
Sbjct: 219 KDAKIAVYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTG 278
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
+ DMALHY NKY +M VRLNSK+DLRRLCK V ATALPRL
Sbjct: 279 GRVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRL 320
|
| >3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 | Back alignment and structure |
|---|
Score = 295 bits (758), Expect = 3e-91
Identities = 102/289 (35%), Positives = 159/289 (55%), Gaps = 52/289 (17%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
+S + + ++I+A ++ T+ GP G NKI++NH+ K+ +TNDAAT++REL+I
Sbjct: 19 NSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIV 78
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPA K+++ M ++ Q+
Sbjct: 79 HPAVKVLV---------------------------------MA-----------TEQQKI 94
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
+MGDGTN V+I AG LL ++ L+ MGL+ EI+ GY +A TL+ L + E+ D
Sbjct: 95 DMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKN 154
Query: 360 NVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILP-----DGSSSFNVDNVRITKILG 414
+ + K IK I SK+YG+ED L++L+++A +LP FNVD++R+ KI+G
Sbjct: 155 DKNELLKMIKPVISSKKYGSEDILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMG 214
Query: 415 SGLFNSEIVQGMVFKRSVEGDI---TKQTKAKIAVYTCPVDIATTETKT 460
L NS +++GMVF R EG + ++ K K+AV+TCP+DIA TETK
Sbjct: 215 GSLSNSTVIKGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIANTETKG 263
|
| >3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 2e-40
Identities = 58/102 (56%), Positives = 80/102 (78%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
K K+AV+TCP+DIA TETKGTVL+ +A E++ FS+GEE Q++ +K IAD G +VAG
Sbjct: 243 KKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAG 302
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
A G++ALHYLN+YG++ +++ SKF+LRRLC+ AT LPRL
Sbjct: 303 AGVGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRL 344
|
| >3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 4e-35
Identities = 70/232 (30%), Positives = 98/232 (42%), Gaps = 68/232 (29%)
Query: 426 MVFKRSVEGD---ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTA 482
+V K + + + + A + TP ELG ++V E+G
Sbjct: 319 LVLKVPSKFELRRLCRVCGATP--------LPRLGAPTP---EELGLVETVKTMEIGGDR 367
Query: 483 VVVFKLE-AAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK-------------- 527
V VFK E SR +T+++RGAT+N +DDIERA+DDGV KG+ K
Sbjct: 368 VTVFKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATE 427
Query: 528 ------------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKK 557
V +TLAE G+ NEV+ LY+AHN +
Sbjct: 428 IELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEP 487
Query: 558 T--------YGFDINGE-NSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G DI+GE + V D E I D+ TK +A+ AT AA T+L
Sbjct: 488 GAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVL 539
|
| >3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 2e-46
Identities = 69/278 (24%), Positives = 135/278 (48%), Gaps = 47/278 (16%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
EA+ +I A K A+T++T+ GPNG++K++++ + VTND ATI+ ++++H AKL
Sbjct: 9 LEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKL 68
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ E+ S+ Q++E+GDGT
Sbjct: 69 MV--------EL------------------------------------SKSQDDEIGDGT 84
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
V++ AGALL A+ LL G+ P I +GY+ A +E L ++ + D++N E +
Sbjct: 85 TGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLI 144
Query: 366 KGIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQ 424
+ K+ + SK + + ++ A +++ + + +++ +G L ++++++
Sbjct: 145 QTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIK 204
Query: 425 GMVFK--RSVEGDITKQTKAKIAVYTCPVDIATTETKT 460
G++ S + AKIA+ TCP + +TK
Sbjct: 205 GVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKH 242
|
| >3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 3e-20
Identities = 31/102 (30%), Positives = 49/102 (48%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA+ TCP + +TK + + S ++ + E+ + EE I+ I +TGAN+ V
Sbjct: 222 EDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQ 281
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
F D A H L + L VR ++ + A +PR
Sbjct: 282 WGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRF 323
|
| >3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 2e-15
Identities = 34/224 (15%), Positives = 71/224 (31%), Gaps = 64/224 (28%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELG-- 479
+ V G I T +I + T +LG+A V G
Sbjct: 298 PAVRW-VGGPEIELIAIATGGRI--------VPRFSELTA---EKLGFAGLVKEISFGTT 345
Query: 480 DTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV-------------------- 519
++V + + SR T+ IRG + +++ +R++ D +
Sbjct: 346 KDKMLVIE-QCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAE 404
Query: 520 -----------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAH-NEGK 556
+ + + + LAEN+G+ + ++++ + E
Sbjct: 405 ISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVN 464
Query: 557 KTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G I+ + D +++ + K + AT IL
Sbjct: 465 PALG--IDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMIL 506
|
| >3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 2e-46
Identities = 72/278 (25%), Positives = 136/278 (48%), Gaps = 49/278 (17%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+ + NISA K AD +RT+ GP GM+K++ + + +TND ATI++++++ HPAA++
Sbjct: 10 AQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARM 69
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ E+ S+ Q+ E GDGT
Sbjct: 70 LV--------EL------------------------------------SKAQDIEAGDGT 85
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
V+I AG+LL + LL+ G+ P+ I ++ AL K +EIL ++ V ++ + E +
Sbjct: 86 TSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMS-RPV-ELSDRETLL 143
Query: 366 KGIKSAIMSKQYGNE-DFLTDLITKACVSIL-PDGSSSFNVDNVRITKILGSGLFNSEIV 423
+++ SK L+ + A + ++ P ++S ++ +++I K LG + + E+V
Sbjct: 144 NSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELV 203
Query: 424 QGMVF-KRSVEGDITKQTKAKIAVYTCPVDIATTETKT 460
+G+V ++ IT+ KAKI + + T+
Sbjct: 204 EGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTDMDN 241
|
| >3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 2e-20
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 601 QQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVV- 659
+ KAKI + + T+ +++ ++ + R E + +K I TG NV+
Sbjct: 219 RVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLL 278
Query: 660 ----VAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
+ D+ALH+LNK +M V+ + D+ +CK + + +
Sbjct: 279 IQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHV 327
|
| >3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 8e-18
Identities = 46/222 (20%), Positives = 80/222 (36%), Gaps = 61/222 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVA-VDELGD 480
MV K +E + I K K +A + T LG A+ V G
Sbjct: 302 MVVKD-IEREDIEFICKTIGTKP--------VAHVDQFTA---DMLGSAELAEEVSLNGS 349
Query: 481 TAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV--------------------- 519
++ A+ + T+V+RG+ + +++ ER++ D +
Sbjct: 350 GKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEI 409
Query: 520 ----------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGKKT 558
T G+ + TLAEN G+ +++L + H +G+KT
Sbjct: 410 ELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKT 469
Query: 559 YGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G IN + + E ++ L + AL AT +IL
Sbjct: 470 TG--INVRKGGISNILEELVVQPLLVSVSALTLATETVRSIL 509
|
| >3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 4e-46
Identities = 66/294 (22%), Positives = 133/294 (45%), Gaps = 51/294 (17%)
Query: 171 PAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAA 230
+ +E NI A + AD +RT+ GP GM+K++ ++ ++ND
Sbjct: 4 KVPSNATFKNKEKP-QEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGH 62
Query: 231 TIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLI 290
TI++++ I HP A++++ E+
Sbjct: 63 TILKQMAILHPVARMLV--------EV--------------------------------- 81
Query: 291 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTL 350
S Q+ E GDGT V+I GALL A+ LL G+ P+ I + ++ A ++++IL +
Sbjct: 82 ---SAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEM 138
Query: 351 TCFEVKDVRNVENVTKGIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRI 409
+V + + E + + +++ SK FL L + + I + S + +++++R+
Sbjct: 139 C-HKV-SLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKNVDLNDIRL 196
Query: 410 TKILGSGLFNSEIVQGMVFKRSV---EGDITKQTKAKIAVYTCPVDIATTETKT 460
K +G + ++E++ G+V ++ G T++ KAKI + + +T+
Sbjct: 197 VKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDTEN 250
|
| >3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 3e-19
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVV--- 659
KAKI + + +T+ +++ ++ K + E L K I NV+
Sbjct: 230 EKAKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQ 289
Query: 660 --VAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
+ D+ALH+L+K +M V+ + ++ L K + + +
Sbjct: 290 KSILRDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADI 336
|
| >3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 | Back alignment and structure |
|---|
Score = 88.7 bits (221), Expect = 1e-18
Identities = 48/223 (21%), Positives = 76/223 (34%), Gaps = 62/223 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDT 481
MV K +E + ++K K IA E T L AD V + +
Sbjct: 311 MVVKD-IEREEIEFLSKGLGCKP--------IADIELFTE---DRLDSADLVEEIDSDGS 358
Query: 482 AVVVFK--LEAAESRIATLVIRGATENYMDDIERAVDDGV-------------------- 519
+V ++VIRGA +D+ ER++ D +
Sbjct: 359 KIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPE 418
Query: 520 -----------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGKK 557
+ +G+ TLAEN G+ S +V+++L S H G+
Sbjct: 419 IEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGEL 478
Query: 558 TYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G I+ S + E IL L A+ A+ +IL
Sbjct: 479 NDG--ISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSIL 519
|
| >1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 2e-45
Identities = 76/280 (27%), Positives = 132/280 (47%), Gaps = 53/280 (18%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+ A NI A K AD VRT GP GM+K++++ I + ++ND ATI++E+++EHP AK+
Sbjct: 21 KNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKM 80
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
I+ E+ S+ Q+ +GDGT
Sbjct: 81 IV--------EV------------------------------------SKAQDTAVGDGT 96
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
++ +G LL A+ LL G+ P+ I NGY+LA+ + +I+ + + + +
Sbjct: 97 TTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIA----EKSTDDATLR 152
Query: 366 KGIKSAIMSKQYGNE-DFLTDLITKA--CVSILPDGSSSFNVDNVRITKILGSGLFNSEI 422
K +A+ K G DFL DL+ KA V+ + DG + + N+++ K G + +++
Sbjct: 153 KIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQF 212
Query: 423 VQGMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
+ G+V + AKIA+ ++I TE +
Sbjct: 213 ISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEA 252
|
| >1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 1e-20
Identities = 34/102 (33%), Positives = 51/102 (50%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA+ ++I TE + V I ++ F E N ++ ++ I +GANVV+
Sbjct: 232 KNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQ 291
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL K G+ VR K D+ +L KA A + L
Sbjct: 292 KGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDL 333
|
| >1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 2e-19
Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 61/221 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDT 481
+R V+ + K T AKI + + TP S LG A++V ++GD
Sbjct: 308 YAVRR-VKKSDMEKLAKATGAKI--------VTDLDDLTP---SVLGEAETVEERKIGDD 355
Query: 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---------------------- 519
+ + +++IRG T++ + ++ERA++D +
Sbjct: 356 RMTFVM-GCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAE 414
Query: 520 ---------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGKKTY 559
N+ G ++ + +TLAEN G+ + KL + +G+ +
Sbjct: 415 LAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISV 474
Query: 560 GFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G ++ +N+ V D G++D K AL+ A A IL
Sbjct: 475 G--VDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMIL 513
|
| >3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 4e-45
Identities = 82/278 (29%), Positives = 138/278 (49%), Gaps = 50/278 (17%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+A NI A + A+TVR+ GP GM+K++++ + + VTND TI+RE+ +EHPAAK+
Sbjct: 18 RDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKM 77
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
+I E+ ++ QE+E+GDGT
Sbjct: 78 LI--------EV------------------------------------AKTQEKEVGDGT 93
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
++ AG LL A+ LL + P+ +V GY+ A K E+L T+ EV ++ E +T
Sbjct: 94 TTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIA-CEV-GAQDKEILT 151
Query: 366 KGIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQ 424
K ++I K + L ++I +A VS + D + D ++I K G+ + ++E+++
Sbjct: 152 KIAMTSITGKGAEKAKEKLAEIIVEA-VSAVVDDEGKVDKDLIKIEKKSGASIDDTELIK 210
Query: 425 GMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
G++ + K T AKIA+ C ++I TET
Sbjct: 211 GVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDA 248
|
| >3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 2e-20
Identities = 36/102 (35%), Positives = 54/102 (52%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
T AKIA+ C ++I TET + I +LM+F EE L++ + I +GANV+
Sbjct: 228 TDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQ 287
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL K G++ R K D+ +L KA A + +
Sbjct: 288 KGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAI 329
|
| >3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 9e-18
Identities = 48/222 (21%), Positives = 88/222 (39%), Gaps = 62/222 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDT 481
+ +R V+ + K T A + IA + +LG A V ++
Sbjct: 304 VAARR-VKKSDMEKLAKATGANV--------IAAIAALSA---QDLGDAGLVEERKISGD 351
Query: 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---------------------- 519
+++ + E + T++IRG TE+ ++++ RAVDD V
Sbjct: 352 SMIFVE-ECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVE 410
Query: 520 ---------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAH-NEGKKT 558
G ++ V +TLAEN G+ + E++ K+ +AH + G K
Sbjct: 411 LSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKC 470
Query: 559 YGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G +N +V D E G+++ K A++ A + +L
Sbjct: 471 AG--LNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLL 510
|
| >1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 6e-45
Identities = 66/280 (23%), Positives = 132/280 (47%), Gaps = 51/280 (18%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
++A+ NI A +++VR++ GP GM+K++++ + + +TND TI++E+++EHPAAK+
Sbjct: 20 KDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKM 79
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ E+ S+ Q+ +GDGT
Sbjct: 80 MV--------EV------------------------------------SKTQDSFVGDGT 95
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
+I AG LL A L+ + P+ I GY++A + ++ ++ ++ +
Sbjct: 96 TTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEIS-TKI-GADEKALLL 153
Query: 366 KGIKSAIMSKQYGNE-DFLTDLITKA--CVSILPDGSSSFNVDNVRITKILGSGLFNSEI 422
K ++++ SK D L ++ +A V+ L DG + DN+++ K G + ++++
Sbjct: 154 KMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQL 213
Query: 423 VQGMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
+ G++ + G AKIA+ P++I E T
Sbjct: 214 INGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDT 253
|
| >1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 3e-20
Identities = 36/102 (35%), Positives = 52/102 (50%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA+ P++I E + I+ + KF EEN L E + I GANVV+
Sbjct: 233 KDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQ 292
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
DMA HYL++ G+ VR K D+ +L KA A+ + +
Sbjct: 293 KGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTI 334
|
| >1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 4e-19
Identities = 46/220 (20%), Positives = 88/220 (40%), Gaps = 59/220 (26%)
Query: 426 MVFKRSVEGD---ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTA 482
+R + D + K T A I ++T + + S+LG A+ V ++G+
Sbjct: 309 YAVRRVKKSDMDKLAKATGASI--------VSTIDEISS---SDLGTAERVEQVKVGEDY 357
Query: 483 VVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV----------------------- 519
+ + ++++RG TE+ +D++ER++ D +
Sbjct: 358 MTFVT-GCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEI 416
Query: 520 --------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGKKTYG 560
G ++ + + LAEN G+ +++ KL + H +G KTYG
Sbjct: 417 AFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYG 476
Query: 561 FDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
IN + D + G+++ A++ AT AA IL
Sbjct: 477 --INVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMIL 514
|
| >3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 6e-45
Identities = 70/280 (25%), Positives = 137/280 (48%), Gaps = 51/280 (18%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+EAV NI+A K + +++ YGP GM+K++++ + + +TND ATI+ +++++HPAAKL
Sbjct: 29 KEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKL 88
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ ++ ++ Q+EE DGT
Sbjct: 89 LV--------QI------------------------------------AKGQDEETADGT 104
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
+IF+G L+ A++LL + P+ I++GYK A L+ + L V + + + +
Sbjct: 105 KTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELA-QTV-SINDTDLLR 162
Query: 366 KGIKSAIMSKQYGNE-DFLTDLITKA--CVSILPDGSSSFNVDNVRITKILGSGLFNSEI 422
K +++ SK +++ D++ KA V+ L ++DN++I K G + ++++
Sbjct: 163 KIAMTSLSSKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQL 222
Query: 423 VQGMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
V G+V + V G + AKIA+ +++ E
Sbjct: 223 VYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELDA 262
|
| >3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 2e-20
Identities = 30/102 (29%), Positives = 51/102 (50%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA+ +++ E + I ++ KF EEN ++E++ I TGANV++
Sbjct: 242 ENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQ 301
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
++A YL K G++ VR K DL +L +A + +
Sbjct: 302 KGIDEVAQSYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNI 343
|
| >3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 1e-17
Identities = 46/222 (20%), Positives = 85/222 (38%), Gaps = 62/222 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDT 481
+ +R + + + T ++ ++ + + +LGYA + ++G+
Sbjct: 318 LAVRR-AKKSDLEKLARATGGRV--------VSNIDEISE---QDLGYASLIEERKVGED 365
Query: 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---------------------- 519
+V + A + +++IRG E +D+ ERA+ D +
Sbjct: 366 KMVFVE-GAKNPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEIE 424
Query: 520 ---------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAH-NEGKKT 558
G ++ V L EN G +++ KL S H NE K
Sbjct: 425 IAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKW 484
Query: 559 YGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
YG I+ +D + G+++ L KM A+K AT AA +L
Sbjct: 485 YG--IDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVL 524
|
| >3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 9e-45
Identities = 66/281 (23%), Positives = 123/281 (43%), Gaps = 51/281 (18%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
E +N+ A A+ V+++ GP G++K++++ I + +TND ATI++ LE+EHPAAK+
Sbjct: 9 EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 68
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
+ E+ + +Q++E+GDGT
Sbjct: 69 LC--------EL------------------------------------ADLQDKEVGDGT 84
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
V+I A LL NAD L++ + P+ +++GY+LA + + + D + +
Sbjct: 85 TSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINT-DELGRDCLI 143
Query: 366 KGIKSAIMSKQYGNE-DFLTDLITKACVSI---LPDGSSSFNVDNVRITKILGSGLFNSE 421
K+++ SK G DF +L+ A ++I G + V+++ + K G S
Sbjct: 144 NAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESM 203
Query: 422 IVQGMVFK--RSVEGDITKQTKAKIAVYTCPVDIATTETKT 460
++ G +G + AKIA + +
Sbjct: 204 LINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGV 244
|
| >3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 6e-20
Identities = 34/102 (33%), Positives = 50/102 (49%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA + + V+I ++L + + E + +E+I+ I TGANV++
Sbjct: 224 VNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTT 283
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
DM L Y + G M VR K DL+R+ KA AT L L
Sbjct: 284 GGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATVLSTL 325
|
| >3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 3e-16
Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 69/232 (29%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTP---PAASELGYADSVAVDEL 478
M +R V I K + A + ++T AS LG A+ V + +
Sbjct: 300 MAVRR-VLKRDLKRIAKASGATV--------LSTLANLEGEETFEASMLGQAEEVVQERI 350
Query: 479 GDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV------------------- 519
D +++ K A++++RGA + D++ER++ D +
Sbjct: 351 CDDELILIK-NTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAV 409
Query: 520 ------------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGK 556
+ ++ + TLA N S ++++KL + HNE +
Sbjct: 410 EAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQ 469
Query: 557 --------KTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
K G ++ N D +AG+ + + K+ +LK+AT AA TIL
Sbjct: 470 VNPERKNLKWIG--LDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITIL 519
|
| >1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 7e-44
Identities = 81/280 (28%), Positives = 132/280 (47%), Gaps = 51/280 (18%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+A NI A + A+TVRT GP GM+K++++ + + VTND ATI+ +++++HPAAK+
Sbjct: 22 RDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKM 81
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ E+ ++ Q++E GDGT
Sbjct: 82 MV--------EV------------------------------------AKTQDKEAGDGT 97
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
++ AG LL A+ LL + PS I GY LA K EIL + V D + E +
Sbjct: 98 TTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIA-IRV-DPDDEETLL 155
Query: 366 KGIKSAIMSKQYGNE-DFLTDLITKA--CVSILPDGSSSFNVDNVRITKILGSGLFNSEI 422
K ++I K + + L L +A V+ DG ++DN++ K G G+ SE+
Sbjct: 156 KIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESEL 215
Query: 423 VQGMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
V+G+V + V + AKIA+ +++ TET
Sbjct: 216 VRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDA 255
|
| >1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 4e-21
Identities = 41/102 (40%), Positives = 56/102 (54%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA+ +++ TET + I S D+LM F EE L++ + IA TGANVV
Sbjct: 235 ENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQ 294
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL KYG+M VR K D+ +L KA A + +
Sbjct: 295 KGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNV 336
|
| >1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 3e-20
Identities = 54/221 (24%), Positives = 86/221 (38%), Gaps = 61/221 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDT 481
M +R V+ + K T AKI + + TP +LGYA+ V +L
Sbjct: 311 MAVRR-VKKSDMEKLAKATGAKI--------VTNVKDLTP---EDLGYAEVVEERKLAGE 358
Query: 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---------------------- 519
++ + + T++IRG TE+ +D++ERA++D V
Sbjct: 359 NMIFVE-GCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIE 417
Query: 520 ---------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGKKTY 559
G + + KTLAEN G+ + E++ K+ S H
Sbjct: 418 LAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGI 477
Query: 560 GFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G I+ D E GI++ K A+K A+ AA IL
Sbjct: 478 G--IDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMIL 516
|
| >3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 8e-44
Identities = 59/286 (20%), Positives = 125/286 (43%), Gaps = 55/286 (19%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
EA +I A + A ++T+ GP G++KI+I+ ++ +TND ATI+ ++E+++ AKL
Sbjct: 44 LEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKL 103
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ ++ S+ Q++E+GDGT
Sbjct: 104 LV--------QL------------------------------------SKSQDDEIGDGT 119
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTC-FEVKD-VRNVEN 363
V++ A ALL A L++ G+ P +I NG+ A + L + +
Sbjct: 120 TGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDF 179
Query: 364 VTKGIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEI 422
+ + K+++ SK + D ++ +A ++++ + D +++ +G + +S++
Sbjct: 180 LLRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDSKL 239
Query: 423 VQGMVFKRSV--------EGDITKQTKAKIAVYTCPVDIATTETKT 460
+ G++ + K+A+ TCP + +TK
Sbjct: 240 INGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKPKTKH 285
|
| >3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 7e-20
Identities = 30/101 (29%), Positives = 48/101 (47%)
Query: 604 KAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGA 663
K+A+ TCP + +TK + I S +E K E+++ +E I + GA+VV+
Sbjct: 266 GVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQW 325
Query: 664 KFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
F D A H L + L VR +L + + N +PR
Sbjct: 326 GFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRF 366
|
| >3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 2e-15
Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 64/224 (28%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELG-- 479
+ V G I T +I + + + +LG + E G
Sbjct: 341 PAVRW-VGGQELEHIAISTNGRI--------VPRFQDLSK---DKLGTCSRIYEQEFGTT 388
Query: 480 DTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV-------------------- 519
+++ + ++ E++ T +RG+ + +D+ ERA+ D +
Sbjct: 389 KDRMLIIE-QSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAE 447
Query: 520 -----------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGK- 556
+ +GI + TLAEN+G+ +S L S + K
Sbjct: 448 VTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKI 507
Query: 557 KTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G ++ D E ++D ++ K + AT IL
Sbjct: 508 SNIG--VDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMIL 549
|
| >3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 2e-43
Identities = 63/283 (22%), Positives = 120/283 (42%), Gaps = 53/283 (18%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
++ +N+ A A+ V+++ GP G++K++++ I VTND ATI+ L+++HPA K+
Sbjct: 23 DDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKI 82
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ E+ +Q Q+ E+GDGT
Sbjct: 83 LV--------EL------------------------------------AQQQDREIGDGT 98
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
V+I A LL A+ L++ + P+ I+ G+++AL + + + + V D E +
Sbjct: 99 TSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSV-DTLGKETLI 157
Query: 366 KGIKSAIMSKQYGNE-DFLTDLITKACVSIL---PDGSSSFNVDNVRITKILGSGLFNSE 421
K+++ SK G + DF ++++ A +++ G + V V + K G S
Sbjct: 158 NIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESL 217
Query: 422 IVQGMVFK--RSVEG--DITKQTKAKIAVYTCPVDIATTETKT 460
+V G + + KIA + A
Sbjct: 218 LVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKARMAMGV 260
|
| >3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 8e-20
Identities = 29/105 (27%), Positives = 47/105 (44%)
Query: 600 LQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVV 659
+ KIA + A + I ++L + + E + E++K I D GA VV
Sbjct: 237 IAGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVV 296
Query: 660 VAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
+ D+ L + +MGVR K DLRR+ +A AT + +
Sbjct: 297 LTTKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSM 341
|
| >3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 9e-16
Identities = 44/236 (18%), Positives = 89/236 (37%), Gaps = 73/236 (30%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTP---PAASELGYADSVAVDEL 478
M +R + + I + T A + +++ +S LG D V +
Sbjct: 316 MGVRR-CKKEDLRRIARATGATL--------VSSMSNLEGEETFESSYLGLCDEVVQAKF 366
Query: 479 GDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV------------------- 519
D ++ K ++ +++++RGA + +D++ER++ D +
Sbjct: 367 SDDECILIK-GTSKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCV 425
Query: 520 ------------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGK 556
T ++ + KTLA N S+E+++KL S H +
Sbjct: 426 EAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAASQ 485
Query: 557 ------------KTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
+ YG ++ ++D AG+L+ ++K+ +LK A A IL
Sbjct: 486 MAKPEDVKRRSYRNYG--LDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAIL 539
|
| >3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 2e-43
Identities = 60/282 (21%), Positives = 114/282 (40%), Gaps = 54/282 (19%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+ + NI+AC + ++ GP G + +++ K ++ND ATI++ L++ HPAAK
Sbjct: 23 KGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKT 82
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ ++ S+ Q+ E+GDGT
Sbjct: 83 LV--------DI------------------------------------SRAQDAEVGDGT 98
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTL-TCFEVKDVRNVENV 364
V I AG L+ A L G++ I+ GY+ A++ +E + L + E +
Sbjct: 99 TSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSEKSSGRELL 158
Query: 365 TKGIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIV 423
+ ++A+ SK N DF + A +S+ + + + I KI G + S +
Sbjct: 159 ERCARTAMSSKLIHNNADFFVKMCVDAVLSL---DRNDLDDKLIGIKKIPGGAMEESLFI 215
Query: 424 QGMVFKRSVEGDITKQ-----TKAKIAVYTCPVDIATTETKT 460
G+ FK++ +Q KI +++ +
Sbjct: 216 NGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKDNA 257
|
| >3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 6e-20
Identities = 18/102 (17%), Positives = 42/102 (41%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
KI +++ + V ++ ++ E + E+++ + +TGAN+V++
Sbjct: 237 NNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSK 296
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
GD+A + + S D+ R+ +AV +
Sbjct: 297 LPIGDLATQFFADRNIFCAGRVSADDMNRVIQAVGGSIQSTT 338
|
| >3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 4e-19
Identities = 46/221 (20%), Positives = 81/221 (36%), Gaps = 61/221 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDT 481
R V D + + I +TT P LG ++G
Sbjct: 313 FCAGR-VSADDMNRVIQAVGGSI--------QSTTSDIKP---EHLGTCALFEEMQIGSE 360
Query: 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---------------------- 519
+F+ +++ TL++RG E + ++ER++ D +
Sbjct: 361 RYNLFQ-GCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEME 419
Query: 520 ---------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGKKTY 559
T G ++ + + L EN G + E+++KL AH++G+K Y
Sbjct: 420 VSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEKWY 479
Query: 560 GFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G + E ++ D + + L K+ AL AT A N IL
Sbjct: 480 G--VVFETENIGDNFAKFVWEPALVKINALNSATEATNLIL 518
|
| >3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 | Back alignment and structure |
|---|
Score = 163 bits (416), Expect = 3e-43
Identities = 48/277 (17%), Positives = 111/277 (40%), Gaps = 47/277 (16%)
Query: 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLI 246
A+ N+++ + + T GP G K++++ + +T D ++ E++I+ P A LI
Sbjct: 17 AALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLI 76
Query: 247 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTN 306
+ Q+E GDGT
Sbjct: 77 A--------RA------------------------------------AAAQDEITGDGTT 92
Query: 307 FVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTK 366
V+ G LL A ++ G+ P I +G+++A ++++ L + + E + +
Sbjct: 93 TVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQ 152
Query: 367 GIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQG 425
+S++++K + + LT ++T A +S+ + + ++ V I ++ ++ ++G
Sbjct: 153 VARSSLLTKVDADLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSPKDTTFIKG 212
Query: 426 MVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
+V T+ A + + ++ TE +
Sbjct: 213 LVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEVNS 249
|
| >3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 6e-17
Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 10/112 (8%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIAD--------- 653
A + + ++ TE SAD+ K + E ++ ++K I D
Sbjct: 229 KNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMD 288
Query: 654 -TGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
V++ M+L K+ ++ +R + ++ RL A +
Sbjct: 289 PDKGFVIINQKGIDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSV 340
|
| >3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 1e-16
Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 53/187 (28%)
Query: 464 ASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDG----- 518
LG++ V + +G+ E + + T++I+G+T + + AV DG
Sbjct: 345 PQILGFSGLVYQETIGEEKFTYVT-ENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVA 403
Query: 519 -----------------------------VNTFKGITKVFV-----------KTLAENTG 538
KG TK + KTL +N+G
Sbjct: 404 NVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSG 463
Query: 539 VKSNEVISKLYSAHN-----EGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYAT 593
+V++ + + + + G ++ D GI D Y A+ AT
Sbjct: 464 FDPLDVLAMVEDELDDAQDSDETRYVG--VDLNIGDSCDPTIEGIWDSYRVLRNAITGAT 521
Query: 594 SAANTIL 600
A+ +L
Sbjct: 522 GIASNLL 528
|
| >3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 4e-43
Identities = 65/280 (23%), Positives = 123/280 (43%), Gaps = 52/280 (18%)
Query: 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLI 246
+ NI+A K AD +RT GP M K++++ + + +TND I+RE++++HPAAK +
Sbjct: 9 KVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSM 68
Query: 247 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTN 306
I E+ S+ Q+EE+GDGT
Sbjct: 69 I--------EI------------------------------------SRTQDEEVGDGTT 84
Query: 307 FVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTK 366
VII AG +L A++ L + P+ +++ Y+ AL + L ++ V D N + +
Sbjct: 85 SVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKIS-IPV-DTSNRDTMLN 142
Query: 367 GIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVD---NVRITKILGSGLFNSEI 422
I S+I +K ++ A ++ + + +D R+ KI G + +S +
Sbjct: 143 IINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCV 202
Query: 423 VQGMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
++G++ + V +I + ++ E++T
Sbjct: 203 LRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQT 242
|
| >3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 5e-21
Identities = 20/102 (19%), Positives = 44/102 (43%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
+I + ++ E++ + I ++ + + EE +++ + I +VV+
Sbjct: 222 KNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITE 281
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL + + +R K D R+ +A A + R
Sbjct: 282 KGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRP 323
|
| >3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 3e-16
Identities = 38/223 (17%), Positives = 80/223 (35%), Gaps = 63/223 (28%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVA-VDELGD 480
+R V I + A+I ++ E ++G + + ++GD
Sbjct: 298 TAIRR-VRKTDNNRIARACGARI--------VSRPEELRE---EDVGTGAGLLEIKKIGD 345
Query: 481 TAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV--------------------- 519
E + + T+++RGA++ + ++ER + D +
Sbjct: 346 EYFTFIT-ECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEM 404
Query: 520 ----------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGK-K 557
G+ + +TL +N G + +++ L + H + +
Sbjct: 405 AVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCE 464
Query: 558 TYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
T+G +NGE +++D E GI + K+ K A A +L
Sbjct: 465 TWG--VNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLL 505
|
| >3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 158 bits (403), Expect = 9e-42
Identities = 61/283 (21%), Positives = 115/283 (40%), Gaps = 56/283 (19%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+ NISAC+ A+ VRT GP GM+K++++ K ++ND ATI++ L++ HPAAK
Sbjct: 10 IPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKT 69
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ ++ ++ Q+ E+GDGT
Sbjct: 70 LV--------DI------------------------------------AKSQDAEVGDGT 85
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTC-FEVKD-VRNVEN 363
V + A L + GL P I+ ++ A + + + + +D V +
Sbjct: 86 TSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKL 145
Query: 364 VTKGIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEI 422
+ K +A+ SK + F ++ A + + + + I K+ G L S++
Sbjct: 146 LEKCAMTALSSKLISQQKAFFAKMVVDAVMML----DDLLQLKMIGIKKVQGGALEESQL 201
Query: 423 VQGMVFKRSV-----EGDITKQTKAKIAVYTCPVDIATTETKT 460
V G+ FK++ E K IA+ +++ +
Sbjct: 202 VAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNA 244
|
| >3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 1e-19
Identities = 18/102 (17%), Positives = 41/102 (40%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
IA+ +++ + + + + ++ E N L ++++ I +GA VV++
Sbjct: 224 HNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSK 283
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
GD+A Y + + DL+R A + +
Sbjct: 284 LPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSV 325
|
| >3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 1e-18
Identities = 35/221 (15%), Positives = 73/221 (33%), Gaps = 61/221 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDT 481
R V + I + + LG ++G
Sbjct: 300 FCAGR-VPEEDLKRTMMACGGSI--------QTSVNALSS---DVLGRCQVFEETQIGGE 347
Query: 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---------------------- 519
F +++ T+++RG E +M++ ER++ D +
Sbjct: 348 RYNFFT-GCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEME 406
Query: 520 ---------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGKKTY 559
T G ++ + + L +N G + +++KL + H +G Y
Sbjct: 407 LSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWY 466
Query: 560 GFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G ++ + D EA + + + ++ AL A+ AA I+
Sbjct: 467 G--VDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIV 505
|
| >3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 2e-41
Identities = 64/279 (22%), Positives = 115/279 (41%), Gaps = 53/279 (18%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHI-DKLFVTNDAATIIRELEIEHPAAK 244
E A D V++ GP GM+K++ + + VTND ATI++ + +++PAAK
Sbjct: 16 ENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAK 75
Query: 245 LIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDG 304
+++ + S++Q++E+GDG
Sbjct: 76 VLV--------NI------------------------------------SKVQDDEVGDG 91
Query: 305 TNFVIIFAGALLVNADNLLRMGLT-PSEIVNGYKLALAKTLEILPTL-TCFEVKDVRNVE 362
T V + + LL A+ L+ P I+ GY+LA A L+ L E
Sbjct: 92 TTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFRE 151
Query: 363 NVTKGIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSE 421
++ K+ + SK + D +L T A + + S N+++++I KILG L +S
Sbjct: 152 DLIHIAKTTLSSKILSQDKDHFAELATNAILRL----KGSTNLEHIQIIKILGGKLSDSF 207
Query: 422 IVQGMVF-KRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
+ +G + K+ + AKI + +D +
Sbjct: 208 LDEGFILAKKFGNNQPKRIENAKILIANTTLDTDKVKIF 246
|
| >3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 9e-20
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 1/103 (0%)
Query: 603 TKAKIAVYTCPVDIATTETKGT-VLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVA 661
AKI + +D + GT + S +L + + E +++ +I I+ G N +
Sbjct: 227 ENAKILIANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFIN 286
Query: 662 GAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D G+ + + RL +
Sbjct: 287 RQLIYDYPEQLFTDLGINSIEHADFEGVERLALVTGGEVVSTF 329
|
| >3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 7e-19
Identities = 43/221 (19%), Positives = 81/221 (36%), Gaps = 61/221 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDT 481
+ + + + T ++ ++T + + +LG D + LG+
Sbjct: 304 NSIEH-ADFEGVERLALVTGGEV--------VSTFDEPSK---CKLGECDVIEEIMLGEQ 351
Query: 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---------------------- 519
+ F T+V+RGAT+ +D+ ER++ D +
Sbjct: 352 PFLKFS-GCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMV 410
Query: 520 ---------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGKKTY 559
G + V LA+N G S+E++SKL S+ G T
Sbjct: 411 MSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTS 470
Query: 560 GFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G ++ N ++ D + GI++ Y K + A+ AA +L
Sbjct: 471 G--LDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLL 509
|
| >3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 3e-41
Identities = 61/278 (21%), Positives = 116/278 (41%), Gaps = 53/278 (19%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHI--DKLFVTNDAATIIRELEIEHPAA 243
E A + D V++ GP GM+KI+++ L VTND ATI++ + +++PAA
Sbjct: 9 ETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAA 68
Query: 244 KLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGD 303
K+++ +M S++Q++E+GD
Sbjct: 69 KVLV--------DM------------------------------------SRVQDDEVGD 84
Query: 304 GTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTC-FEVKDVRNVE 362
GT V + A LL A++L+ + P I+ G++ A + L +V+ +
Sbjct: 85 GTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQ 144
Query: 363 NVTKGIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSE 421
++ + + SK + D T L +A + + S N++ + + K LG L +S
Sbjct: 145 DLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHVIKKLGGSLADSY 200
Query: 422 IVQGMVF-KRSVEGDITKQTKAKIAVYTCPVDIATTET 458
+ +G + K+ + AKI + +D +
Sbjct: 201 LDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKI 238
|
| >3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 4e-19
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 1/103 (0%)
Query: 603 TKAKIAVYTCPVDIATTETKGT-VLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVA 661
AKI + +D + G+ V + S ++ + E+ +++E+++ I G N +
Sbjct: 220 ENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFIN 279
Query: 662 GAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
+ G+M + + RL
Sbjct: 280 RQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGEIASTF 322
|
| >3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 | Back alignment and structure |
|---|
Score = 88.7 bits (221), Expect = 2e-18
Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 61/221 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDT 481
M + + + T +I +T + +LG + +G+
Sbjct: 297 MAIEH-ADFVGVERLALVTGGEI--------ASTFDHPEL---VKLGSCKLIEEVMIGED 344
Query: 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---------------------- 519
++ F A T+V+RGAT+ +D+ ER++ D +
Sbjct: 345 KLIHFS-GVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEML 403
Query: 520 ---------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGKKTY 559
+ G V + +A+N G S +++++L +AH+EGK T
Sbjct: 404 MAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTA 463
Query: 560 GFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G ++ + ++ D + GI + + K L A AA IL
Sbjct: 464 G--LDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVIL 502
|
| >3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 | Back alignment and structure |
|---|
Score = 156 bits (398), Expect = 4e-41
Identities = 54/277 (19%), Positives = 107/277 (38%), Gaps = 51/277 (18%)
Query: 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLI 246
A+ NISA + D +RT GP G K++++ + +T D ++ E++I+HP A LI
Sbjct: 10 AALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLI 69
Query: 247 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTN 306
++ + Q++ GDGT
Sbjct: 70 A--------KV------------------------------------ATAQDDITGDGTT 85
Query: 307 FVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTK 366
++ G LL AD + GL P I G++ A K L+ L + V + E +
Sbjct: 86 SNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVK---VSKEMDRETLID 142
Query: 367 GIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQG 425
++++ +K + D LT+ + + + + ++ V I ++ ++ +++G
Sbjct: 143 VARTSLRTKVHAELADVLTEAVVDS-ILAIKKQDEPIDLFMVEIMEMKHKSETDTSLIRG 201
Query: 426 MVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
+V + A I ++ TE +
Sbjct: 202 LVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNS 238
|
| >3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 2e-19
Identities = 40/179 (22%), Positives = 64/179 (35%), Gaps = 45/179 (25%)
Query: 464 ASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---- 519
L V LG+ + + R TL+I+G ++ + I+ A+ DG+
Sbjct: 333 PDCLLGHAGVYEYTLGEEKFTFIE-KCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVK 391
Query: 520 ---------------------------NTFKGITKVFV-----------KTLAENTGVKS 541
+ KG ++ V K LA+N+G
Sbjct: 392 NAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDL 451
Query: 542 NEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
E + K+ + H+E + G ++ + AAEAGI D Y K L T A IL
Sbjct: 452 QETLVKVQAEHSESGQLVG--VDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNIL 508
|
| >3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 3e-18
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
A I ++ TE KSA+E K + E +E+++K I + V
Sbjct: 218 EDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDS 277
Query: 663 AK---------FGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
K +L L K G++ +R + ++ RL A AL L
Sbjct: 278 DKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTLACGGIALNSL 328
|
| >3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 4e-40
Identities = 71/286 (24%), Positives = 124/286 (43%), Gaps = 57/286 (19%)
Query: 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLI 246
+A NI+A K AD +RT GP M K++++ + L +TND I+RE+++ HPAAK +
Sbjct: 19 QAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSM 78
Query: 247 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTN 306
+ S+ Q+EE+GDGT VII AG +L
Sbjct: 79 LELSRTQDEEVGDGTTTVIILAGEILAQC------------------------------- 107
Query: 307 FVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTK 366
A L+ + P I+ K AL LE++ + V DV N + K
Sbjct: 108 ------------APYLIEKNIHPVIIIQALKKALTDALEVIKQV-SKPV-DVENDAAMKK 153
Query: 367 GIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNV---------DNVRITKILGSG 416
I+++I +K + + + +L A ++ D + VR+ KI G
Sbjct: 154 LIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGD 213
Query: 417 LFNSEIVQGMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
+ +S +++G++ + V ++ + CP++ E++T
Sbjct: 214 VLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGESQT 259
|
| >3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 4e-20
Identities = 23/102 (22%), Positives = 47/102 (46%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
++ + CP++ E++ + I+ ++ + + EE Q++ + I +V+
Sbjct: 239 ENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITE 298
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL K G +R K D R+ + AT + R+
Sbjct: 299 KGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRV 340
|
| >3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 531 KTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALK 590
+TL +N G ++S+L + H +G T G I+G+ ++D GI + + K ++K
Sbjct: 510 RTLIQNAGGDPIRLLSQLRAKHAQGNFTTG--IDGDKGKIVDMVSYGIWEPEVIKQQSVK 567
Query: 591 YATSAANTIL 600
A +A +L
Sbjct: 568 TAIESACLLL 577
|
| >3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 3e-32
Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 52/242 (21%)
Query: 225 VTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEH 284
+TND ATI++E++I+HPAAK+I+ E+
Sbjct: 11 ITNDGATILKEMDIQHPAAKMIV--------EV--------------------------- 35
Query: 285 PAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTL 344
S+ Q+ E+GDGT + +G LL A+ L+ G+ + I GY+ A K
Sbjct: 36 ---------SKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISEGYRHAAEKCR 86
Query: 345 EILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNE-DFLTDLITKACVSI---LPDGSS 400
EIL T+T + + + K +AI K + L+ L KA SI DG
Sbjct: 87 EILETIT-IAI-SPDDEAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLK 144
Query: 401 SFNVDNVRITKILGSGLFNSEIVQGMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTET 458
++N++I K G + +SE++ G+V + K AKI + +CPV+ TE
Sbjct: 145 VNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEV 204
Query: 459 KT 460
+
Sbjct: 205 DS 206
|
| >3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 1e-20
Identities = 36/102 (35%), Positives = 51/102 (50%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKI + +CPV+ TE + I S ++ F EE + E + + +GANVV
Sbjct: 186 ENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQ 245
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
DMA +Y+ K G+ VR K DL+RL K AT + L
Sbjct: 246 KGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDL 287
|
| >3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-19
Identities = 45/221 (20%), Positives = 80/221 (36%), Gaps = 61/221 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDT 481
+R V+ ++K T A I I + T ++G A V E+
Sbjct: 262 YAVRR-VKKSDLKRLSKVTGATI--------IQDLDQITT---EDVGTAGLVEEKEVRGG 309
Query: 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---------------------- 519
+ S+ T+++ G TE+ +D ++ A++D +
Sbjct: 310 KMTYVT-GCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVE 368
Query: 520 ---------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGKKTY 559
+T KG ++ V LAEN G+ +++ +L S H +G K
Sbjct: 369 LSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEKGNKNA 428
Query: 560 GFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G +N V+D E +++ K A+ A A IL
Sbjct: 429 G--LNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMIL 467
|
| >1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 2e-23
Identities = 34/102 (33%), Positives = 51/102 (50%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA+ ++I TE + V I ++ F E N ++ ++ I +GANVV+
Sbjct: 20 KNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQ 79
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL K G+ VR K D+ +L KA A + L
Sbjct: 80 KGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDL 121
|
| >1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 3e-22
Identities = 20/102 (19%), Positives = 43/102 (42%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
+I + ++ E++ + I ++ + + EE + + + I +VV+
Sbjct: 26 KNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITE 85
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL + + +R K D R+ +A A + R
Sbjct: 86 KGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRP 127
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 5e-08
Identities = 95/631 (15%), Positives = 195/631 (30%), Gaps = 129/631 (20%)
Query: 176 QY-YDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIV-----INHIDKLFVT--N 227
QY Y S E+A N CKD D ++ ++ I+ ++ +LF T +
Sbjct: 15 QYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 228 DAATIIRE-----LEIEHPAAKLIILGSQMQEEEM---GDGTNFV----IIFAGALLVNA 275
++++ L I + L S ++ E+ ++ ++ +
Sbjct: 74 KQEEMVQKFVEEVLRINYK-----FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 276 DNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIF--AG------ALLVNADNLLRMGL 327
N+ R P KL +++ + V+I G AL V ++ +
Sbjct: 129 YNVSR--LQPYLKLRQALLELRPAK------NVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 328 TPSEI--VN-GYKLALAKTLEILPTLTCFEV-KDVRNVENVTKGIKSAIMSKQYGNEDFL 383
+I +N + LE+L L +++ + + + + IK I S Q L
Sbjct: 181 -DFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 384 TDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAK 443
+ C+ +L NV+ K + + +I ++ R + +T A
Sbjct: 239 KSKPYENCLLVL---------LNVQNAKAWNAFNLSCKI---LLTTRFKQ--VTDFLSAA 284
Query: 444 IAVYTCPVDIATTETKTPPAASELGYAD--SVAVDELGDTAVVVFKLEAAESRIATLVIR 501
+ + T TP L +L + S IA +
Sbjct: 285 TTTHISLDHH--SMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPR--RLSIIAESIRD 339
Query: 502 GAT--ENY----MDDIERAVDDGVNTFK-GITKVFVKTLA---ENTGVKSNEVISKLYSA 551
G +N+ D + ++ +N + + L+ + + + ++S ++
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-ILLSLIW-- 396
Query: 552 HNEGKKTYGFDINGE--NSSVI--DAAEA--GILDLYLTKMWALKYATSAANTILQQTKA 605
+ K+ + + S++ E+ I +YL L+ + +I+
Sbjct: 397 -FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 606 KIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQI--------KAIADTGAN 657
D+ L E L + + I
Sbjct: 456 PKTF--DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 658 VVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPA 717
+G+ L L Y +C N RLV+ + F P
Sbjct: 514 WNASGSILNT--LQQLKFYK------------PYICD--NDPKYERLVNAILD---FLPK 554
Query: 718 PP---VQGRERDRPAQTCKYLHQNALDPDDD 745
+ + D L + AL +D+
Sbjct: 555 IEENLICSKYTD--------LLRIALMAEDE 577
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 9e-05
Identities = 66/467 (14%), Positives = 136/467 (29%), Gaps = 130/467 (27%)
Query: 9 YLTTCRIPSPELASDGQNYQTYGIEKYFTRNQTYQCLVCKNKTLFHDLAEGARHVERHHW 68
+L SPE + Y I+ +T + + + + R
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS------NIKLRIHSIQAELRRLLK 239
Query: 69 DQPDKNSLFVISDRFLCNL---------CGNEYKFRNFIIGRATSN-DTIGTNRTR---- 114
+P +N L V+ + + N C + + R D + T
Sbjct: 240 SKPYENCLLVLLN--VQNAKAWNAFNLSC------KILLTTRFKQVTDFLSAATTTHISL 291
Query: 115 --IACSLYPTDSYVTCAGMMATVPYTGITLLKVVREIRRRGAFRTVYPTIPSPRRTTLPA 172
+ +L P + ++ Y + RE+ +PRR ++ A
Sbjct: 292 DHHSMTLTPDEV----KSLLLK--YLDCRPQDLPREVLTT-----------NPRRLSIIA 334
Query: 173 AI-------FQYYDKHFSGLEEAVYRNISACKDFADT--VRTAYGPNGMNKIVINHIDKL 223
+ + KH + + + I + + + R + D+L
Sbjct: 335 ESIRDGLATWDNW-KHVNC--DKLTTIIESSLNVLEPAEYRKMF-------------DRL 378
Query: 224 FVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIE 283
V +A I P L ++ + + ++ V LV I
Sbjct: 379 SVFPPSAHI--------PTILLSLIWFDVIKSDVMV---VVNKLHKYSLVEKQPKESTIS 427
Query: 284 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRM----GLTPSEIVN----- 334
P+ L + E + +V+ N+ + L P +
Sbjct: 428 IPSIYLELKVKLENEYAL-----------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 335 -GYKLA---LAKTLEILPTLTCF------EVKDVRNVE---NVTKGIKSAIMS-KQYGNE 380
G+ L + + + + F E K +R+ N + I + + K Y +
Sbjct: 477 IGHHLKNIEHPERMTLFRMV--FLDFRFLEQK-IRHDSTAWNASGSILNTLQQLKFY--K 531
Query: 381 DFLTD------LITKACVSILPDGSSSFNVDNVRITKILGSGLFNSE 421
++ D + A + LP N+ + T +L L +
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEE--NLICSKYTDLLRIALMAED 576
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 2e-04
Identities = 38/254 (14%), Positives = 70/254 (27%), Gaps = 76/254 (29%)
Query: 2 LPRETESYLTTCRIPSP-------ELASDG----QNYQTYGIEKYFT-RNQTYQCLVCKN 49
LPRE +P E DG N++ +K T + L
Sbjct: 318 LPREV------LTT-NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 50 -KTLFHDLA---EGARHVERH----HWDQPDKNSLFVISDRF----LCNLCGNEYKFRNF 97
+ +F L+ A H+ W K+ + V+ ++ L E
Sbjct: 371 YRKMFDRLSVFPPSA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-- 427
Query: 98 IIG-----RATSNDTIGTNRTRIA------------CSLYPTDSYVTCAGMMATVPYTGI 140
I + + +R+ + D Y Y+ I
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF----------YSHI 477
Query: 141 TL-LKVVREIRRRGAFRTVY------------PTIPSPRRTTLPAAI--FQYYDKHFSGL 185
LK + R FR V+ + ++ + ++Y +
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 186 EEAVYRNISACKDF 199
+ R ++A DF
Sbjct: 538 DPKYERLVNAILDF 551
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 745 | |||
| 3ko1_A | 553 | Chaperonin; 9-fold symmetry, double ring, ATP hydr | 100.0 | |
| 3ruv_A | 543 | Chaperonin, CPN; double-ring, protein folding mach | 100.0 | |
| 3iyg_Q | 512 | T-complex protein 1 subunit theta; TRIC/CCT, asymm | 100.0 | |
| 3iyg_H | 515 | T-complex protein 1 subunit ETA; TRIC/CCT, asymmet | 100.0 | |
| 3iyg_A | 529 | T-complex protein 1 subunit alpha; TRIC/CCT, asymm | 100.0 | |
| 1q3q_A | 548 | Thermosome alpha subunit; chaperone, chaperonin; H | 100.0 | |
| 1a6d_B | 543 | Thermosome (beta subunit); group II chaperonin, CC | 100.0 | |
| 3iyg_G | 515 | T-complex protein 1 subunit gamma; TRIC/CCT, asymm | 100.0 | |
| 3iyg_B | 513 | T-complex protein 1 subunit beta; TRIC/CCT, asymme | 100.0 | |
| 1a6d_A | 545 | Thermosome (alpha subunit); group II chaperonin, C | 100.0 | |
| 3p9d_H | 568 | T-complex protein 1 subunit theta; HSP60, eukaryot | 100.0 | |
| 3iyg_D | 518 | T-complex protein 1 subunit delta; TRIC/CCT, asymm | 100.0 | |
| 3p9d_G | 550 | T-complex protein 1 subunit ETA; HSP60, eukaryotic | 100.0 | |
| 3p9d_A | 559 | T-complex protein 1 subunit alpha; HSP60, eukaryot | 100.0 | |
| 3iyg_E | 515 | T-complex protein 1 subunit; TRIC/CCT, asymmetric, | 100.0 | |
| 3p9d_D | 528 | T-complex protein 1 subunit delta; HSP60, eukaryot | 100.0 | |
| 3p9d_E | 562 | T-complex protein 1 subunit epsilon; HSP60, eukary | 100.0 | |
| 3iyg_Z | 517 | T-complex protein 1 subunit zeta; TRIC/CCT, asymme | 100.0 | |
| 3p9d_C | 590 | T-complex protein 1 subunit gamma; HSP60, eukaryot | 100.0 | |
| 3p9d_B | 527 | T-complex protein 1 subunit beta; HSP60, eukaryoti | 100.0 | |
| 3p9d_F | 546 | T-complex protein 1 subunit zeta; HSP60, eukaryoti | 100.0 | |
| 3aq1_B | 500 | Thermosome subunit; group II chaperonin, protein f | 100.0 | |
| 1iok_A | 545 | Chaperonin 60; chaperone; 3.20A {Paracoccus denitr | 100.0 | |
| 1we3_A | 543 | CPN60(groel); chaperonin, chaperone, groel, HSP60, | 100.0 | |
| 1kp8_A | 547 | Groel protein; chaperonin, assisted protein foldin | 100.0 | |
| 3rtk_A | 546 | 60 kDa chaperonin 2; heat shock protein, chaperone | 100.0 | |
| 3iyg_G | 515 | T-complex protein 1 subunit gamma; TRIC/CCT, asymm | 99.98 | |
| 1ass_A | 159 | Thermosome; chaperonin, HSP60, TCP1, groel, thermo | 99.98 | |
| 1gml_A | 178 | T-complex protein 1 subunit gamma; chaperone, chap | 99.98 | |
| 3iyg_B | 513 | T-complex protein 1 subunit beta; TRIC/CCT, asymme | 99.97 | |
| 3iyg_H | 515 | T-complex protein 1 subunit ETA; TRIC/CCT, asymmet | 99.97 | |
| 3iyg_A | 529 | T-complex protein 1 subunit alpha; TRIC/CCT, asymm | 99.97 | |
| 3iyg_Z | 517 | T-complex protein 1 subunit zeta; TRIC/CCT, asymme | 99.97 | |
| 3iyg_E | 515 | T-complex protein 1 subunit; TRIC/CCT, asymmetric, | 99.97 | |
| 3aq1_B | 500 | Thermosome subunit; group II chaperonin, protein f | 99.97 | |
| 1a6d_B | 543 | Thermosome (beta subunit); group II chaperonin, CC | 99.97 | |
| 3p9d_H | 568 | T-complex protein 1 subunit theta; HSP60, eukaryot | 99.97 | |
| 3iyg_D | 518 | T-complex protein 1 subunit delta; TRIC/CCT, asymm | 99.96 | |
| 3ruv_A | 543 | Chaperonin, CPN; double-ring, protein folding mach | 99.96 | |
| 1q3q_A | 548 | Thermosome alpha subunit; chaperone, chaperonin; H | 99.96 | |
| 3ko1_A | 553 | Chaperonin; 9-fold symmetry, double ring, ATP hydr | 99.96 | |
| 3p9d_F | 546 | T-complex protein 1 subunit zeta; HSP60, eukaryoti | 99.96 | |
| 3p9d_G | 550 | T-complex protein 1 subunit ETA; HSP60, eukaryotic | 99.96 | |
| 1a6d_A | 545 | Thermosome (alpha subunit); group II chaperonin, C | 99.96 | |
| 3iyg_Q | 512 | T-complex protein 1 subunit theta; TRIC/CCT, asymm | 99.96 | |
| 3p9d_C | 590 | T-complex protein 1 subunit gamma; HSP60, eukaryot | 99.96 | |
| 3p9d_D | 528 | T-complex protein 1 subunit delta; HSP60, eukaryot | 99.96 | |
| 3p9d_A | 559 | T-complex protein 1 subunit alpha; HSP60, eukaryot | 99.95 | |
| 3p9d_E | 562 | T-complex protein 1 subunit epsilon; HSP60, eukary | 99.95 | |
| 3p9d_B | 527 | T-complex protein 1 subunit beta; HSP60, eukaryoti | 99.95 | |
| 1we3_A | 543 | CPN60(groel); chaperonin, chaperone, groel, HSP60, | 99.72 | |
| 3rtk_A | 546 | 60 kDa chaperonin 2; heat shock protein, chaperone | 99.71 | |
| 1iok_A | 545 | Chaperonin 60; chaperone; 3.20A {Paracoccus denitr | 99.7 | |
| 1kp8_A | 547 | Groel protein; chaperonin, assisted protein foldin | 99.7 | |
| 1gml_A | 178 | T-complex protein 1 subunit gamma; chaperone, chap | 99.31 | |
| 1ass_A | 159 | Thermosome; chaperonin, HSP60, TCP1, groel, thermo | 98.59 | |
| 3m6c_A | 194 | 60 kDa chaperonin 1; chaperone, ATP-binding, nucle | 95.82 | |
| 3osx_A | 201 | 60 kDa chaperonin; alpha, beta, apical domain, cha | 93.83 | |
| 1srv_A | 145 | Protein (groel (HSP60 class)); chaperone, cell div | 92.85 | |
| 3m6c_A | 194 | 60 kDa chaperonin 1; chaperone, ATP-binding, nucle | 91.66 | |
| 1srv_A | 145 | Protein (groel (HSP60 class)); chaperone, cell div | 91.37 | |
| 3osx_A | 201 | 60 kDa chaperonin; alpha, beta, apical domain, cha | 91.11 | |
| 1x6e_A | 72 | Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca | 90.77 | |
| 1x5w_A | 70 | Zinc finger protein 64, isoforms 1; ZNF338, nuclea | 90.6 | |
| 2epr_A | 48 | POZ-, at HOOK-, and zinc finger-containing protein | 89.5 | |
| 3uk3_C | 57 | Zinc finger protein 217; transcription factor, DNA | 89.0 | |
| 2eps_A | 54 | POZ-, at HOOK-, and zinc finger-containing protein | 88.35 | |
| 2drp_A | 66 | Protein (tramtrack DNA-binding domain); protein-DN | 88.04 | |
| 2lce_A | 74 | B-cell lymphoma 6 protein; structural genomics, no | 87.93 | |
| 2adr_A | 60 | ADR1; transcription regulation, zinc finger,; NMR | 87.92 | |
| 1bbo_A | 57 | Human enhancer-binding protein MBP-1; DNA-binding | 87.54 | |
| 2cot_A | 77 | Zinc finger protein 435; ADK_LID domain, zinc fing | 85.83 | |
| 2ee8_A | 106 | Protein ODD-skipped-related 2; zinc binding, ZF-C2 | 85.56 | |
| 2kmk_A | 82 | Zinc finger protein GFI-1; tandem repeat zinc fing | 85.31 | |
| 2d9h_A | 78 | Zinc finger protein 692; ZF-C2H2 domain, structura | 85.24 | |
| 1x6h_A | 86 | Transcriptional repressor CTCF; zinc finger protei | 84.89 | |
| 1f2i_G | 73 | Fusion of N-terminal 17-MER peptide extension to Z | 84.23 | |
| 2epq_A | 45 | POZ-, at HOOK-, and zinc finger-containing protein | 83.69 | |
| 4gzn_C | 60 | ZFP-57, zinc finger protein 57; transcription-DNA | 83.5 | |
| 2yt9_A | 95 | Zinc finger-containing protein 1; C2H2, structural | 83.23 | |
| 2ee8_A | 106 | Protein ODD-skipped-related 2; zinc binding, ZF-C2 | 82.64 | |
| 2lv2_A | 85 | Insulinoma-associated protein 1; structural genomi | 81.41 | |
| 2dmd_A | 96 | Zinc finger protein 64, isoforms 1 and 2; ZNF338, | 81.27 | |
| 2ct1_A | 77 | Transcriptional repressor CTCF; CCCTC-BINDING fact | 81.19 | |
| 2dmd_A | 96 | Zinc finger protein 64, isoforms 1 and 2; ZNF338, | 80.98 |
| >3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-72 Score=643.53 Aligned_cols=389 Identities=29% Similarity=0.491 Sum_probs=352.2
Q ss_pred CceeecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHH
Q psy16434 170 LPAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILG 249 (745)
Q Consensus 170 ~~~~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~ 249 (745)
.|..+|+++.++.+| .+++.+|+.||.+|+++|+|||||+||||||+++.|+++|||||+||||+|+++||+|||++++
T Consensus 14 ~~~~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~ 92 (553)
T 3ko1_A 14 IPVIILKEGSSRTYG-KEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQI 92 (553)
T ss_dssp --------------C-HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEEECTTSCEEEECCHHHHHHSSCCCSHHHHHHHHH
T ss_pred CeEEEEecCcccchh-HHHHHHHHHHHHHHHHHHHhccCCcchhhHHHhhccceEEecCccchhhhhhccChhHHHHHHH
Confidence 367789999999999 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCH
Q psy16434 250 SQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTP 329 (745)
Q Consensus 250 s~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP 329 (745)
|++||+++||| |||+|+||++||+++.+++++|+||
T Consensus 93 a~~qd~e~GDG--------------------------------------------TTtvvVLA~eLL~~a~~li~~GihP 128 (553)
T 3ko1_A 93 AKGQDEETADG--------------------------------------------TKTAVIFSGELVKKAEDLLYKDVHP 128 (553)
T ss_dssp HHTCSSSSSTT--------------------------------------------HHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred hhCCcccccCC--------------------------------------------ceeEEEehHHHHHhHHHHHhcCCCc
Confidence 99999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCC--CCCccc
Q psy16434 330 SEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSS--SFNVDN 406 (745)
Q Consensus 330 ~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~--~~dl~~ 406 (745)
+.|++||++|++.+++.|++++++. +..+++.|.++|+|+++||+++. +++|++|+++|+.+++++..+ .+|+++
T Consensus 129 ~~I~~G~~~A~~~a~~~L~~~s~~v--~~~d~e~L~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~G~~~~dl~~ 206 (553)
T 3ko1_A 129 TIIISGYKKAEEVALQTIQELAQTV--SINDTDLLRKIAMTSLSSKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDN 206 (553)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEC--CTTCHHHHHHHHHHHHTTSSCCTTHHHHHHHHHHHHHHHCCCTTSSCCCCGGG
T ss_pred eEEehhhhHHHHHHHHHHHHhcCCC--CCCcHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHHHHHhcCCceEEechh
Confidence 9999999999999999999998773 33478899999999999999985 799999999999999875323 389999
Q ss_pred eEEEEccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC-------------------------
Q psy16434 407 VRITKILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK------------------------- 459 (745)
Q Consensus 407 I~I~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k------------------------- 459 (745)
|+|+++.|+++.||++++||+|++++.| +|++++||||++++++|++.+++.+
T Consensus 207 I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ 286 (553)
T 3ko1_A 207 IQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEK 286 (553)
T ss_dssp EEEEECCCSCGGGCEEESEEEECSCBSCTTSCSCCBSCEEEEECSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCccccceeeEEEEecccccCCCCccccccceEEEecCcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986 5999999999999999999876532
Q ss_pred ---------------------------------------------------------CCCCcccccccccEEEEEECCee
Q psy16434 460 ---------------------------------------------------------TPPAASELGYADSVAVDELGDTA 482 (745)
Q Consensus 460 ---------------------------------------------------------~~p~a~~LG~a~~vq~~eiGdts 482 (745)
+++++++||+|+++++.++|+++
T Consensus 287 vekI~~~g~~vvI~~~~I~~~al~~L~~~gI~~v~~v~k~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~d~ 366 (553)
T 3ko1_A 287 VDKILATGANVIICQKGIDEVAQSYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDK 366 (553)
T ss_dssp HHHHHTTCCSEEECSSCBCSHHHHHHHHHTCEEECCCCHHHHHHHHTTTTCCEESCGGGCCSSSSEECSEEECCCCSSSC
T ss_pred HHHHHhhcceEEEeccChHHHHHHHHHhcchhhhhhhhhhhHHHHHHhhCCeeecccccCChhhcchHHHHHHhhcCcce
Confidence 67888999999999999999999
Q ss_pred EEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-----------------------------------
Q psy16434 483 VVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK----------------------------------- 527 (745)
Q Consensus 483 vti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~----------------------------------- 527 (745)
+++|.|+.. +.++||++||+|+.+++|.+|+++||+++++++++
T Consensus 367 ~~~i~g~~~-~~~~TI~lrG~te~~l~E~er~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~ 445 (553)
T 3ko1_A 367 MVFVEGAKN-PKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLRKYAPQVGGKEQLAVE 445 (553)
T ss_dssp CEEEESCSS-SSCEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHH
T ss_pred EEEeccCCC-CceEEEeeeccHHHHHHHHHHHHHHHHHHHHHHhhcCceecCCceeEeHHHHHHHHhccccCChhHhHHH
Confidence 999999987 89999999999999999999999999999999987
Q ss_pred -------HHHHHHHhhccchhhHHHHHHHHHhhcCC-ccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhh
Q psy16434 528 -------VFVKTLAENTGVKSNEVISKLYSAHNEGK-KTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTI 599 (745)
Q Consensus 528 -------~IPr~LaeNAGld~~~vlsKL~~~h~~g~-~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mi 599 (745)
.+|++|++|||+|+.+++++|++.|.++. .++|||+.++ ++.||...|||||+.|+.++|+.|++.+.|+
T Consensus 446 ~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g--~~~d~~~~gI~dp~~vk~~al~~A~e~a~~i 523 (553)
T 3ko1_A 446 AYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKWYGIDLYAG--QPVDMWQKGVIEPALVKMNAIKAATEAATLV 523 (553)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTCSGGGTTEEEETTTT--EEEESGGGSCEEETTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHhhCcCCceEeEEeecC--CchHHHHhCccchhhhhhhhhhhcchhheEE
Confidence 57899999999999999999999987765 6799999999 9999999999999999999999999999999
Q ss_pred cccccceee
Q psy16434 600 LQQTKAKIA 608 (745)
Q Consensus 600 l~IDn~kIl 608 (745)
+++|++...
T Consensus 524 L~iD~ii~~ 532 (553)
T 3ko1_A 524 LRIDDVVSA 532 (553)
T ss_dssp HHEEEECCC
T ss_pred EehHHHHHh
Confidence 999988654
|
| >3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-72 Score=639.12 Aligned_cols=385 Identities=31% Similarity=0.507 Sum_probs=362.7
Q ss_pred eecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhh
Q psy16434 173 AIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQM 252 (745)
Q Consensus 173 ~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~ 252 (745)
.+|+++.++.+| .+++.+|+.||.+|+++|+|||||+||||||+++.|+++|||||+||||+|+++||+|||++++|++
T Consensus 6 ~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~ 84 (543)
T 3ruv_A 6 GVLPENMKRYMG-RDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKT 84 (543)
T ss_dssp CSSCSSEEEEET-HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTSCEEEECCHHHHHHHSCCCCHHHHHHHHHHHH
T ss_pred eeecCCcchhcc-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHH
Confidence 678999999999 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHH
Q psy16434 253 QEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEI 332 (745)
Q Consensus 253 qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I 332 (745)
||+++||| |||+|+||++||+++.+++++|+||+.|
T Consensus 85 qd~e~GDG--------------------------------------------TTtvvVLA~~Ll~~a~~ll~~GihP~~I 120 (543)
T 3ruv_A 85 QEKEVGDG--------------------------------------------TTTAVVVAGELLRKAEELLDQNVHPTIV 120 (543)
T ss_dssp HHHHTSSC--------------------------------------------HHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHhhhCCC--------------------------------------------cccHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccceEEEE
Q psy16434 333 VNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRITK 411 (745)
Q Consensus 333 ~~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~k 411 (745)
++||++|++.+++.|++++++. +..+++.|.++|+|+++||+.+. +++|++|+++|+.+++++ ++.+|+++|+|++
T Consensus 121 ~~G~~~A~~~a~~~L~~~s~~v--~~~d~~~L~~va~tsl~sK~~~~~~~~i~~livdAv~~V~~~-~g~~dl~~I~V~k 197 (543)
T 3ruv_A 121 VKGYQAAAQKAQELLKTIACEV--GAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDD-EGKVDKDLIKIEK 197 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEC--CTTCHHHHHHHHHHHHHHTCGGGCCHHHHHHHHHHHHHHCCT-TSCCCGGGEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCC--CCCCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcc-CCCcccceEEEEE
Confidence 9999999999999999998773 33478899999999999999974 799999999999999875 3569999999999
Q ss_pred ccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC------------------------------
Q psy16434 412 ILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK------------------------------ 459 (745)
Q Consensus 412 i~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k------------------------------ 459 (745)
+.|+++.||++++||+|++++.| +|++++||||++++++|++.+++.+
T Consensus 198 ~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~~n~kIll~~~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~ 277 (543)
T 3ruv_A 198 KSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIK 277 (543)
T ss_dssp EECSCGGGCEEESSEEESCCCSCTTSCSEEEEEEEEEESSCBSCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcccceeecceEEeccccCccccccccCcEEEEEcccccccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 5999999999999999999876532
Q ss_pred ----------------------------------------------------CCCCcccccccccEEEEEECCeeEEEEE
Q psy16434 460 ----------------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFK 487 (745)
Q Consensus 460 ----------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~ 487 (745)
+++++++||+|+++++.++|++++++|.
T Consensus 278 ~~g~~vvi~~~~I~~~al~~L~~~gI~~v~~v~k~~le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~ 357 (543)
T 3ruv_A 278 ASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVE 357 (543)
T ss_dssp HHTCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEE
T ss_pred HcCCCEEEEeCCccHHHHHHHHHcCcEEEeeCCHHHHHHHHHHhCCceecccccCCHHHCCcccEEEEEEeCCceEEEEE
Confidence 6788899999999999999999999999
Q ss_pred ecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------------------------------
Q psy16434 488 LEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------------------------------- 527 (745)
Q Consensus 488 g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------------------------------- 527 (745)
|+.. +.++||++||+|+.+++|.+|+++||+++++++++
T Consensus 358 g~~~-~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~A 436 (543)
T 3ruv_A 358 ECKH-PKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADA 436 (543)
T ss_dssp CCSS-CSSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred CCCC-CceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 9987 88999999999999999999999999999999987
Q ss_pred --HHHHHHHhhccchhhHHHHHHHHHhh-cCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhccccc
Q psy16434 528 --VFVKTLAENTGVKSNEVISKLYSAHN-EGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTK 604 (745)
Q Consensus 528 --~IPr~LaeNAGld~~~vlsKL~~~h~-~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn 604 (745)
.+|++|++|||+|+.+++++|++.|. ++..++|||+.++ .+.||...|||||+.|+.++|+.|++.+.|++++|+
T Consensus 437 Le~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g--~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ 514 (543)
T 3ruv_A 437 LEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTG--AVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDD 514 (543)
T ss_dssp HTHHHHHHHHHTTCCHHHHHHHHHHHHTTTCCTTEEECTTTC--SEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCceeeeeCCCC--ccccHHHcCCEecHHHHHHHHHHHHHHHHHHHhHHh
Confidence 67999999999999999999999987 6667899999999 999999999999999999999999999999999999
Q ss_pred ceee
Q psy16434 605 AKIA 608 (745)
Q Consensus 605 ~kIl 608 (745)
+...
T Consensus 515 ii~~ 518 (543)
T 3ruv_A 515 VIAA 518 (543)
T ss_dssp EEEE
T ss_pred heec
Confidence 8764
|
| >3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-71 Score=634.45 Aligned_cols=384 Identities=60% Similarity=0.966 Sum_probs=359.7
Q ss_pred cccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhch
Q psy16434 177 YYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEE 256 (745)
Q Consensus 177 ~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~ 256 (745)
+|+++++|.++++.+|+.||.+|+++|+|||||+||||||+++.|+++|||||+||||+|+++||+|||++++|++||++
T Consensus 1 ~~~~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~~ 80 (512)
T 3iyg_Q 1 EGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQE 80 (512)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHHHHHHHHHHHHhhhh
Confidence 46788899779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy16434 257 MGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGY 336 (745)
Q Consensus 257 ~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~ 336 (745)
+||| |||+++||++||+++.+++++|+||+.|++||
T Consensus 81 ~GDG--------------------------------------------TTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~ 116 (512)
T 3iyg_Q 81 VGDG--------------------------------------------TNFVLVFAGALLELAEELLRLGLSVSEVIEGY 116 (512)
T ss_pred hCCC--------------------------------------------hhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 9999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCC
Q psy16434 337 KLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSG 416 (745)
Q Consensus 337 ~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs 416 (745)
++|++.+++.|+++++....+..+++.|.++|+|+++||+.+++++|++|+++|+.+++++ ++.+|+++|+|.|+.|++
T Consensus 117 ~~A~~~a~~~L~~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~i~~livdAv~~V~~~-~~~i~v~~I~i~k~~Ggs 195 (512)
T 3iyg_Q 117 EIACKKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFPD-SGHFNVDNIRVCKILGSG 195 (512)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHhcc-CCcccHhHeeEeeccCCC
Confidence 9999999999999865333445678899999999999999888899999999999999875 357899999999999999
Q ss_pred cccceeEeeEEEeecccCCceeeeCceEEEeccCCCccccccC-------------------------------------
Q psy16434 417 LFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK------------------------------------- 459 (745)
Q Consensus 417 ~~dS~lv~G~~l~~~~~~~~~~i~nakIlil~~~Le~~k~e~k------------------------------------- 459 (745)
+.||++++||+|++++.++|+.++|++|+++++||++.+++.+
T Consensus 196 ~~ds~lv~G~~~dk~~~~~~~~~~n~kI~ll~~~le~~~~e~k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vv 275 (512)
T 3iyg_Q 196 VHSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVV 275 (512)
T ss_pred cccceEEeeEEEecCcCCCCcccccCceEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 9999999999999999999999999999999999988766532
Q ss_pred ---------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEecccccc
Q psy16434 460 ---------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAAESR 494 (745)
Q Consensus 460 ---------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~~~ 494 (745)
+++++++||+|+++++.++|++++++|.+|+++++
T Consensus 276 i~~~~I~~la~~~l~k~~I~av~~~~~~dle~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~~g~~~~~~~~~~~~~~~ 355 (512)
T 3iyg_Q 276 VTGGRVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGA 355 (512)
T ss_pred EECCCccHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCHHHCCcccEEEEEEeCCeEEEEEEcccCCCc
Confidence 67888999999999999999999999999976578
Q ss_pred eeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------------HHHHH
Q psy16434 495 IATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------------VFVKT 532 (745)
Q Consensus 495 a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------------~IPr~ 532 (745)
++||++||+|+.+++|.+|+++||+++++++++ .+|++
T Consensus 356 ~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~ 435 (512)
T 3iyg_Q 356 ISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRA 435 (512)
T ss_pred eEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987 57899
Q ss_pred HHhhccchhhHHHHHHHHHhhcCCccceeeec--CCCcceeecccccccccccchhhHhhhhhhcchhhccccccee
Q psy16434 533 LAENTGVKSNEVISKLYSAHNEGKKTYGFDIN--GENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 533 LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~--~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kI 607 (745)
|++|||+|+.+++++|++.|.++..++|||+. ++ .+.||...|||||+.|+..+++.|++.+.|++++|++..
T Consensus 436 La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~~~g--~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~ 510 (512)
T 3iyg_Q 436 LAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVP--AVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIM 510 (512)
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCCCcEEEecCCCCC--cccchHhccCeEcHHHHHHHHHHHHHHHHHHHhHhHhee
Confidence 99999999999999999999888788999998 45 899999999999999999999999999999999998764
|
| >3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-71 Score=634.49 Aligned_cols=380 Identities=25% Similarity=0.416 Sum_probs=354.2
Q ss_pred ccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhc
Q psy16434 176 QYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEE 255 (745)
Q Consensus 176 ~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~ 255 (745)
++|+++++| .+++.+||.||.+|+++|+|||||+||||||+++.|+++|||||+||||+|+++||+|||++++|++||+
T Consensus 1 ~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~ 79 (515)
T 3iyg_H 1 KEGTDSSQG-IPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDA 79 (515)
T ss_pred CCCccccCc-HHHHHHHHHHHHHHHHHHhhCcCCCCCeEEEECCCCCeEEECCHHHHHHHccCCCHHHHHHHHHHHHhhc
Confidence 467788889 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy16434 256 EMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNG 335 (745)
Q Consensus 256 ~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g 335 (745)
++||| |||+|+||++||++|.+++++|+||+.|++|
T Consensus 80 ~~GDG--------------------------------------------TTtvvVLA~~Ll~~a~~li~~GihP~~I~~G 115 (515)
T 3iyg_H 80 EVGDG--------------------------------------------TTSVTLLAAEFLKQVKPYVEEGLHPQIIIRA 115 (515)
T ss_pred eeCcc--------------------------------------------hhhHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccccCcc--cccccceeeeccccccCC-ChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEc
Q psy16434 336 YKLALAKTLEILPTLTCFEVKDVRN--VENVTKGIKSAIMSKQYG-NEDFLTDLITKACVSILPDGSSSFNVDNVRITKI 412 (745)
Q Consensus 336 ~~~a~~~~l~~L~~~s~~~~~~~~~--~~~L~~va~tsl~sK~~~-~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki 412 (745)
|++|++.+++.|++++++...+..+ ++.|.++|+|+++||+++ ++++|++|+++|+.+++. .+|++.|+|+++
T Consensus 116 ~~~A~~~a~~~L~~~a~~v~~~~~~~~~~~L~~va~tsl~sK~~s~~~~~i~~livdAv~~V~~----~~d~~~I~V~k~ 191 (515)
T 3iyg_H 116 FRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDD----LLQLKMIGIKKV 191 (515)
T ss_pred HHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHhcc----cCCcceEEEEec
Confidence 9999999999999998874321111 677899999999999997 579999999999999963 588889999999
Q ss_pred cCCCcccceeEeeEEEeecccCC-----ceeeeCceEEEeccCCCccccccC----------------------------
Q psy16434 413 LGSGLFNSEIVQGMVFKRSVEGD-----ITKQTKAKIAVYTCPVDIATTETK---------------------------- 459 (745)
Q Consensus 413 ~Ggs~~dS~lv~G~~l~~~~~~~-----~~~i~nakIlil~~~Le~~k~e~k---------------------------- 459 (745)
.|+++.||++++||+|++++.|+ |++++||||++++++||+.+++.+
T Consensus 192 ~Gg~~~ds~lv~G~~~dk~~~~p~~~~~p~~~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~~~~E~~~l~~~le~ 271 (515)
T 3iyg_H 192 QGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEK 271 (515)
T ss_pred CCCCccceEEEeeeEEecCccCcccccCCccccccEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999864 889999999999999999887532
Q ss_pred ------------------------------------------------------CCCCcccccccccEEEEEECCeeEEE
Q psy16434 460 ------------------------------------------------------TPPAASELGYADSVAVDELGDTAVVV 485 (745)
Q Consensus 460 ------------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti 485 (745)
++++++.||+|+++++.++|++++++
T Consensus 272 I~~~g~~vvi~~~~I~dla~~~l~~~gI~~v~~~~k~~leria~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~ 351 (515)
T 3iyg_H 272 IHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNF 351 (515)
T ss_pred HHhcCCcEEEECCcccHHHHHHHHHcCCcccccccHHHHHHHHHHhCCEEeeccccCCHHHCCcccEEEEEEEcCeEEEE
Confidence 77888999999999999999999999
Q ss_pred EEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH--------------------------------------
Q psy16434 486 FKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK-------------------------------------- 527 (745)
Q Consensus 486 ~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~-------------------------------------- 527 (745)
|.|+.. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 352 i~g~~~-~~~~tI~lrG~t~~~l~E~kr~i~DAl~~~r~~v~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a 430 (515)
T 3iyg_H 352 FTGCPK-AKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYA 430 (515)
T ss_pred EecCCC-CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCeecCCcHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 999987 88999999999999999999999999999999987
Q ss_pred ----HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcccc
Q psy16434 528 ----VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQT 603 (745)
Q Consensus 528 ----~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~ID 603 (745)
.+|++||+|||+|+.+++++|++.|.++..++|||+.++ ++.||...|||||+.|+.++++.|++.+.|++++|
T Consensus 431 ~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g--~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~iD 508 (515)
T 3iyg_H 431 KALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDINTE--DIADNFEAFVWEPAMVRINALTAASEAACLIVSVD 508 (515)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccCCCeeEeCCCC--cccccHhccCEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999988777899999999 99999999999999999999999999999999999
Q ss_pred ccee
Q psy16434 604 KAKI 607 (745)
Q Consensus 604 n~kI 607 (745)
++..
T Consensus 509 ~ii~ 512 (515)
T 3iyg_H 509 ETIK 512 (515)
T ss_pred HHhc
Confidence 8754
|
| >3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-71 Score=632.96 Aligned_cols=379 Identities=30% Similarity=0.471 Sum_probs=351.0
Q ss_pred cccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhc
Q psy16434 179 DKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMG 258 (745)
Q Consensus 179 ~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~G 258 (745)
.++.+| .+++.+|+.||.+|+++|+|||||+||+|||+++.|+++|||||+||||+|+++||+|||++++|++||+++|
T Consensus 3 ~~~~~g-~~a~~~ni~a~~~la~~v~ttlGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~e~G 81 (529)
T 3iyg_A 3 GDRSTG-EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVG 81 (529)
T ss_pred cchhch-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCChHHHHHHHHHHHhhhhhC
Confidence 456678 5899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy16434 259 DGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKL 338 (745)
Q Consensus 259 DGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~ 338 (745)
|| |||+|+||++||++|.+++++|+||+.|++||++
T Consensus 82 DG--------------------------------------------TTtvvvLA~eLL~~a~~li~~GihP~~I~~G~~~ 117 (529)
T 3iyg_A 82 DG--------------------------------------------TTSVVIIAAELLKNADELVKQKIHPTSVISGYRL 117 (529)
T ss_pred CC--------------------------------------------hhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99 9999999999999999999999999999999999
Q ss_pred HHHHHHHhccc-ccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcC---CCCCCCCccceEEEEcc
Q psy16434 339 ALAKTLEILPT-LTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILP---DGSSSFNVDNVRITKIL 413 (745)
Q Consensus 339 a~~~~l~~L~~-~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~---~~~~~~dl~~I~I~ki~ 413 (745)
|++.+++.|++ ++++ ++..+++.|.++|+|+++||+.++ +++|++|+++|+.++++ +....+|+++|+|+++.
T Consensus 118 A~~~a~~~L~~~~s~~--v~~~~~e~l~~va~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~g~~~~dv~~I~I~k~~ 195 (529)
T 3iyg_A 118 ACKEAVRYISENLIIN--TDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAH 195 (529)
T ss_pred HHHHHHHHHHHhcccC--CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHhhhccCCCcccccceEEEEEec
Confidence 99999999998 8876 333467899999999999999985 79999999999999973 33346888899999999
Q ss_pred CCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC--------------------------------
Q psy16434 414 GSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK-------------------------------- 459 (745)
Q Consensus 414 Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k-------------------------------- 459 (745)
|+++.||++++||+|++++.+ +|++++||||++++++|++.+++.+
T Consensus 196 G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIlll~~~le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~ 275 (529)
T 3iyg_A 196 GRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILAT 275 (529)
T ss_pred CCCccceEEEeeeEEecCcccccCCcccCCceEEEecCCcccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999976 5999999999999999999877532
Q ss_pred --------------------------------------------------CC------CCcccccccccEEEEEECCeeE
Q psy16434 460 --------------------------------------------------TP------PAASELGYADSVAVDELGDTAV 483 (745)
Q Consensus 460 --------------------------------------------------~~------p~a~~LG~a~~vq~~eiGdtsv 483 (745)
++ +.++.||+|+.+++.++|++++
T Consensus 276 g~nvvi~~~~I~d~al~~L~~~gI~av~~v~k~~leria~~tGa~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~ 355 (529)
T 3iyg_A 276 GANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDEL 355 (529)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCceeccCCHHHHHHHHHHhCCeeecchhcccchhccChhhCccceEEEEEEeCCceE
Confidence 22 3467899999999999999999
Q ss_pred EEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------
Q psy16434 484 VVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------ 527 (745)
Q Consensus 484 ti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------ 527 (745)
++|.|+.. ++++||++||+++.+++|.+|+++||+++++++++
T Consensus 356 ~~~~g~~~-~~~~TI~lrG~t~~~l~E~er~l~Dal~v~r~~v~~~~iVpGGGa~E~~ls~~L~~~~~~~~g~eq~~i~~ 434 (529)
T 3iyg_A 356 ILIKNTKA-RTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAE 434 (529)
T ss_pred EEEEcCCC-CceEEEEECCchHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCcHHHHHHHHHHHHHhhhcCChHHHHHHH
Confidence 99999987 88999999999999999999999999999999987
Q ss_pred ------HHHHHHHhhccchhhHHHHHHHHHhhcCC--------ccceeeecCCCcceeecccccccccccchhhHhhhhh
Q psy16434 528 ------VFVKTLAENTGVKSNEVISKLYSAHNEGK--------KTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYAT 593 (745)
Q Consensus 528 ------~IPr~LaeNAGld~~~vlsKL~~~h~~g~--------~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~ 593 (745)
.||++||+|||+|+.+++++|++.|..+. .++|+|+.++ .+.||...|||||+.||.++++.|+
T Consensus 435 fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~~~~G~d~~~g--~~~d~~~~gV~dp~~vk~~al~~A~ 512 (529)
T 3iyg_A 435 FARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNG--KPRDNKQAGVFEPTIVKVKSLKFAT 512 (529)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccccccccCceeeeeCCCC--CccChhhccCEecHHHHHHHHHHHH
Confidence 67999999999999999999999997765 5799999999 9999999999999999999999999
Q ss_pred hcchhhccccccee
Q psy16434 594 SAANTILQQTKAKI 607 (745)
Q Consensus 594 e~a~mil~IDn~kI 607 (745)
+.+.|+++||++..
T Consensus 513 e~a~~iL~iD~ii~ 526 (529)
T 3iyg_A 513 EAAITILRIDDLIK 526 (529)
T ss_pred HHHHHHHhHHhhhc
Confidence 99999999998754
|
| >1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-71 Score=633.48 Aligned_cols=388 Identities=32% Similarity=0.493 Sum_probs=362.0
Q ss_pred ceeecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHH
Q psy16434 171 PAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGS 250 (745)
Q Consensus 171 ~~~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s 250 (745)
|..+++++.+..+| ++++.+|++||.+|+++|+|||||+||||||+++.|+++|||||+||||+|+++||+|||++++|
T Consensus 8 ~~~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a 86 (548)
T 1q3q_A 8 PVVILPEGTQRYVG-RDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVA 86 (548)
T ss_dssp -CCCSCTTCEEEEH-HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHHHHHHHHHH
T ss_pred CcccccCCcceech-HHHHHHHHHHHHHHHHHHHhccCCCCceEEEEcCCCCeEEECCHHHHHHHhhccchHHHHHHHHH
Confidence 55578889888888 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHH
Q psy16434 251 QMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPS 330 (745)
Q Consensus 251 ~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~ 330 (745)
++||+++||| |||+|+||++||+++.+++++|+||+
T Consensus 87 ~~qd~e~GDG--------------------------------------------TTtvvvLA~~LL~~a~~ll~~GihP~ 122 (548)
T 1q3q_A 87 KTQDKEAGDG--------------------------------------------TTTAVVIAGELLRKAEELLDQNIHPS 122 (548)
T ss_dssp HHHHHHTSSC--------------------------------------------HHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HhcCCEECCC--------------------------------------------hhHHHHHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCC--CCCCccce
Q psy16434 331 EIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGS--SSFNVDNV 407 (745)
Q Consensus 331 ~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~--~~~dl~~I 407 (745)
.|++||++|++.+++.|++++++. +..+++.|.++|+|+++||+.++ +++|++|+++|+.+++++.. ..+|++.|
T Consensus 123 ~I~~G~~~A~~~a~~~L~~~s~~v--~~~d~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~V~~~~~g~~~~d~~~I 200 (548)
T 1q3q_A 123 IITKGYALAAEKAQEILDEIAIRV--DPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNI 200 (548)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEEC--CTTCHHHHHHHHHHHSCSSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhccccCCCccccCCeE
Confidence 999999999999999999998763 33468899999999999999985 79999999999999986522 35888999
Q ss_pred EEEEccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC--------------------------
Q psy16434 408 RITKILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK-------------------------- 459 (745)
Q Consensus 408 ~I~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k-------------------------- 459 (745)
+|+++.|++++||++++||+|++++.+ +|++++||||++++++||+.+++.+
T Consensus 201 ~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~l 280 (548)
T 1q3q_A 201 KFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMV 280 (548)
T ss_dssp EEEEEEBSCGGGCEEESSEEESCCCSSTTSCSEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCccceEEEeeEEEeccCCCCCCcceecCCEEEEEecCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999986 4999999999999999999887632
Q ss_pred --------------------------------------------------------CCCCcccccccccEEEEEECCeeE
Q psy16434 460 --------------------------------------------------------TPPAASELGYADSVAVDELGDTAV 483 (745)
Q Consensus 460 --------------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsv 483 (745)
+++++++||+|+++++.++|++++
T Consensus 281 e~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~ 360 (548)
T 1q3q_A 281 DHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENM 360 (548)
T ss_dssp HHHHHHTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETTEEE
T ss_pred HHHHHhCcCEEEEcCCcCHHHHHHHHHCCcEEEccCCHHHHHHHHHHhCCeEecccccCCHHHCCCceEEEEEEecCceE
Confidence 667888999999999999999999
Q ss_pred EEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------
Q psy16434 484 VVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------ 527 (745)
Q Consensus 484 ti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------ 527 (745)
++|+|+.. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 361 ~~~~g~~~-~~~~TI~lrG~te~~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~ 439 (548)
T 1q3q_A 361 IFVEGCKN-PKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIEN 439 (548)
T ss_dssp EEEECCSS-CSSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEECTTHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEecCCC-CCeEEEEECCCChHHHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHHHHHHHHHHHhhhcCCcHHHHHHH
Confidence 99999986 89999999999999999999999999999999987
Q ss_pred ------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcc
Q psy16434 528 ------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601 (745)
Q Consensus 528 ------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~ 601 (745)
.+|++|++|||+|+.+++++|++.|.++..++|||+.++ .+.||...+||||+.|+..+++.|++.+.|+++
T Consensus 440 ~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g--~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~ 517 (548)
T 1q3q_A 440 FADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEG--KPADMLEKGIIEPLRVKKQAIKSASEAAIMILR 517 (548)
T ss_dssp HHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTEEEETTTT--EEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcceeCCCC--CccchhhcCCEecHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999876666899999999 999999999999999999999999999999999
Q ss_pred cccceee
Q psy16434 602 QTKAKIA 608 (745)
Q Consensus 602 IDn~kIl 608 (745)
+|++...
T Consensus 518 iD~iI~~ 524 (548)
T 1q3q_A 518 IDDVIAA 524 (548)
T ss_dssp CCEEEEC
T ss_pred HHHHHhc
Confidence 9986553
|
| >1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-71 Score=634.27 Aligned_cols=388 Identities=26% Similarity=0.442 Sum_probs=350.8
Q ss_pred ceeecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHH
Q psy16434 171 PAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGS 250 (745)
Q Consensus 171 ~~~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s 250 (745)
|..+++++.+..+| ++++.+|+.||.+|+++|+|||||+||||||+++.|+++|||||+||||+|+++||+|||++++|
T Consensus 6 ~~~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~Akll~e~a 84 (543)
T 1a6d_B 6 PIFILKEGTKRESG-KDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVS 84 (543)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHH
T ss_pred chhhcCCcchhhhh-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHhhccchHHHHHHHHH
Confidence 55678889888899 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHH
Q psy16434 251 QMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPS 330 (745)
Q Consensus 251 ~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~ 330 (745)
++||+++||| |||+++||++||+++.+++++|+||+
T Consensus 85 ~~qd~e~GDG--------------------------------------------TTtvvvLA~~LL~~a~~ll~~GihP~ 120 (543)
T 1a6d_B 85 KTQDSFVGDG--------------------------------------------TTTAVIIAGGLLQQAQGLINQNVHPT 120 (543)
T ss_dssp TCTTCCCTTH--------------------------------------------HHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HhcCCEECCC--------------------------------------------hhHHHHHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCC--CCCccce
Q psy16434 331 EIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSS--SFNVDNV 407 (745)
Q Consensus 331 ~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~--~~dl~~I 407 (745)
.|++||++|++.+++.|++++++. +..+++.|.++|+|+++||+.++ +++|++|+++|+.+++++.++ .+|+++|
T Consensus 121 ~I~~G~~~A~~~a~~~L~~~a~~v--~~~~~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I 198 (543)
T 1a6d_B 121 VISEGYRMASEEAKRVIDEISTKI--GADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNI 198 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEEC--CTTHHHHHHHHHHHHHTTSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHhcccccCCcccccceE
Confidence 999999999999999999998763 33467899999999999999985 799999999999999865222 5888999
Q ss_pred EEEEccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC--------------------------
Q psy16434 408 RITKILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK-------------------------- 459 (745)
Q Consensus 408 ~I~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k-------------------------- 459 (745)
+|+++.|++++||++++||+|++++.+ +|++++||||++++++||+.+++.+
T Consensus 199 ~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~l 278 (543)
T 1a6d_B 199 QVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMV 278 (543)
T ss_dssp EEEEEESSCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCccceeEEccEEEecCCCCCCCcceecCCeEEEEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999986 4999999999999999999876531
Q ss_pred --------------------------------------------------------CCCCcccccccccEEEEEECCeeE
Q psy16434 460 --------------------------------------------------------TPPAASELGYADSVAVDELGDTAV 483 (745)
Q Consensus 460 --------------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsv 483 (745)
++++++.||+|+++++.++|++++
T Consensus 279 e~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~k~~le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~ 358 (543)
T 1a6d_B 279 DKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYM 358 (543)
T ss_dssp HHHHHTTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETTEEE
T ss_pred HHHHHcCCCEEEECCCcCHHHHHHHHHCCeeEeccCCHHHHHHHHHHhCCceecccccCCHHHCCCceEEEEEEecCceE
Confidence 678889999999999999999999
Q ss_pred EEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------
Q psy16434 484 VVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------ 527 (745)
Q Consensus 484 ti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------ 527 (745)
++|+|+.. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 359 ~~~~g~~~-~~~~TI~lrG~t~~~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~s~~L~~~~~~~~g~~q~~i~~ 437 (543)
T 1a6d_B 359 TFVTGCKN-PKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEK 437 (543)
T ss_dssp EEEEEESS-SSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred EEEecCCC-CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHCCCccCCccHHHHHHHHHHHHHhhhcCChHHHHHHH
Confidence 99999987 89999999999999999999999999999999887
Q ss_pred ------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcc
Q psy16434 528 ------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601 (745)
Q Consensus 528 ------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~ 601 (745)
.+|++|++|||+|+.+++++|++.|.++..++|||+.++ .+.||...||+||+.|+..+++.|++.+.|+++
T Consensus 438 ~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g--~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~ 515 (543)
T 1a6d_B 438 FADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTG--EIEDMVKNGVIEPIRVGKQAIESATEAAIMILR 515 (543)
T ss_dssp HHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTT--EEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCeeEeCCCC--cccchhhcCceecHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999987777899999999 999999999999999999999999999999999
Q ss_pred cccceee
Q psy16434 602 QTKAKIA 608 (745)
Q Consensus 602 IDn~kIl 608 (745)
+|++...
T Consensus 516 id~iI~~ 522 (543)
T 1a6d_B 516 IDDVIAT 522 (543)
T ss_dssp EEEEEC-
T ss_pred HHHHHhc
Confidence 9997654
|
| >3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-70 Score=626.76 Aligned_cols=379 Identities=25% Similarity=0.421 Sum_probs=350.8
Q ss_pred cccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhc
Q psy16434 179 DKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMG 258 (745)
Q Consensus 179 ~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~G 258 (745)
+++++| .+++.+|+.||.+|+++|||||||+||||||+++.|+++|||||+||||+|+++||+|||++++|++||+++|
T Consensus 2 ~~~~~g-~~~~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~G 80 (515)
T 3iyg_G 2 TKRESG-RKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVG 80 (515)
T ss_pred Ccccch-HHHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEECCHHHHHHhcccCCHHHHHHHHHHHHhhhhhC
Confidence 456778 5899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy16434 259 DGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKL 338 (745)
Q Consensus 259 DGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~ 338 (745)
|| |||+|+||++||++|.+++++|+||+.|++||++
T Consensus 81 DG--------------------------------------------TTtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~ 116 (515)
T 3iyg_G 81 DG--------------------------------------------TTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRK 116 (515)
T ss_pred CC--------------------------------------------hhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99 9999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCC--CCCccc-eEEEEccC
Q psy16434 339 ALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSS--SFNVDN-VRITKILG 414 (745)
Q Consensus 339 a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~--~~dl~~-I~I~ki~G 414 (745)
|++.+++.|++++++ .+..+++.|.++|+|+++||.++. .+++++++++|+..+.++.++ .+|+++ |+|+++.|
T Consensus 117 A~~~a~~~L~~~s~~--v~~~~~~~l~~va~tsl~sK~i~~~~~~~~~i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~G 194 (515)
T 3iyg_G 117 ALDDMISTLKKISIP--VDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPG 194 (515)
T ss_pred HHHHHHHHHHHhhcc--cCCCCHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHhcccccCCCcccchhheeEEEEecC
Confidence 999999999999877 344567899999999999999974 788999999999998743222 366654 99999999
Q ss_pred CCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC---------------------------------
Q psy16434 415 SGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK--------------------------------- 459 (745)
Q Consensus 415 gs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k--------------------------------- 459 (745)
|+++||++++||+|++++.| ||++++||||++++++||+.+++.+
T Consensus 195 gs~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g 274 (515)
T 3iyg_G 195 GIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLK 274 (515)
T ss_pred CCcccceEEeeEEEeCCCCCCCCcceeeeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999987 5999999999999999999887642
Q ss_pred -------------------------------------------------CCCCcccccc-cccEEEEEECCeeEEEEEec
Q psy16434 460 -------------------------------------------------TPPAASELGY-ADSVAVDELGDTAVVVFKLE 489 (745)
Q Consensus 460 -------------------------------------------------~~p~a~~LG~-a~~vq~~eiGdtsvti~~g~ 489 (745)
++++++.||+ |+.+++.++|++++++|.||
T Consensus 275 ~~vIi~~~~I~~~al~~L~~~~I~av~~~~k~~leria~~tGa~ii~~l~~l~~~~LG~~a~~v~~~~~g~~~~~~i~g~ 354 (515)
T 3iyg_G 275 PDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITEC 354 (515)
T ss_pred CCEEEECCccCHHHHHHHHHCCceeeccCCHHHHHHHHHHhCCeeeccccccChhhcCCcccEEEEEEECCceEEEEeCC
Confidence 6788899999 99999999999999999999
Q ss_pred ccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------------
Q psy16434 490 AAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------------ 527 (745)
Q Consensus 490 ~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------------ 527 (745)
.. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 355 ~~-~~~~TIllrG~t~~~l~E~er~i~Dal~~~r~~~~~~~ivpGGGa~e~~~~~~L~~~~~~~~g~eq~~i~~~a~Ale 433 (515)
T 3iyg_G 355 KD-PKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALE 433 (515)
T ss_pred CC-CCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 87 89999999999999999999999999999999985
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHhhcC-CccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccce
Q psy16434 528 VFVKTLAENTGVKSNEVISKLYSAHNEG-KKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAK 606 (745)
Q Consensus 528 ~IPr~LaeNAGld~~~vlsKL~~~h~~g-~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~k 606 (745)
.+|++||+|||+|+.+++++|++.|..+ ...+|+|+.++ .+.||...|||||+.|+.++++.|++.+.|++++|++.
T Consensus 434 ~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g--~~~d~~~~gi~dp~~vk~~al~~A~e~a~~iL~iD~ii 511 (515)
T 3iyg_G 434 VIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETG--TLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIV 511 (515)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCceeeeCCCC--cccccHHcCCEEcHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 6799999999999999999999998754 45789999999 99999999999999999999999999999999999875
Q ss_pred e
Q psy16434 607 I 607 (745)
Q Consensus 607 I 607 (745)
.
T Consensus 512 ~ 512 (515)
T 3iyg_G 512 S 512 (515)
T ss_pred e
Confidence 4
|
| >3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-70 Score=625.03 Aligned_cols=378 Identities=26% Similarity=0.400 Sum_probs=353.2
Q ss_pred ccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCC--CCeEEecCHHHHHhhccccChhhHHHHHHHhhhhc
Q psy16434 178 YDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHI--DKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEE 255 (745)
Q Consensus 178 ~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~--g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~ 255 (745)
++++.+| .+++.+|+.||..|+++|+|||||+||||||+++. |+++|||||+||||+|+++||+|||++++|++||+
T Consensus 2 ~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~~G~~~iTnDG~tIlk~i~v~hp~Akll~e~a~~qd~ 80 (513)
T 3iyg_B 2 GADEERA-ETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDD 80 (513)
T ss_pred Ccchhhh-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEeecCCCCCCeEEECCHHHHHHHccccCHHHHHHHHHHHHhhh
Confidence 4566778 58999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy16434 256 EMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNG 335 (745)
Q Consensus 256 ~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g 335 (745)
++||| |||+++||++||+++.+++++|+||+.|++|
T Consensus 81 e~GDG--------------------------------------------TTtvvVLA~~LL~~a~~li~~GihP~~I~~G 116 (513)
T 3iyg_B 81 EVGDG--------------------------------------------TTSVTVLAAELLREAESLIAKKIHPQTIIAG 116 (513)
T ss_pred hhCCC--------------------------------------------hhhhHHHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccccC-cccccccceeeeccccccCC-ChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEcc
Q psy16434 336 YKLALAKTLEILPTLTCFEVKDV-RNVENVTKGIKSAIMSKQYG-NEDFLTDLITKACVSILPDGSSSFNVDNVRITKIL 413 (745)
Q Consensus 336 ~~~a~~~~l~~L~~~s~~~~~~~-~~~~~L~~va~tsl~sK~~~-~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~ 413 (745)
|++|++.+++.|++++++...+. .+++.|.++|+|+++||+.+ ++++|++|+++|+.+++++ +|++.|+|+++.
T Consensus 117 ~~~A~~~a~~~L~~~s~~v~~~~~~~~~~l~~va~tslssK~~~~~~~~i~~livdAv~~V~~~----~d~~~I~V~ki~ 192 (513)
T 3iyg_B 117 WREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGS----GNLEAIHVIKKL 192 (513)
T ss_pred HHHHHHHHHHHHHHhCcCcccccccCHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhccc----CCcCeEEEEEeC
Confidence 99999999999999998743221 25788999999999999997 4789999999999999853 788999999999
Q ss_pred CCCcccceeEeeEEEeecccC-CceeeeCceEEEeccCCCccccc-cC--------------------------------
Q psy16434 414 GSGLFNSEIVQGMVFKRSVEG-DITKQTKAKIAVYTCPVDIATTE-TK-------------------------------- 459 (745)
Q Consensus 414 Ggs~~dS~lv~G~~l~~~~~~-~~~~i~nakIlil~~~Le~~k~e-~k-------------------------------- 459 (745)
|+++.||++++||+|++++.+ ||++++||||++++++||+.+++ .+
T Consensus 193 gg~~~ds~lv~G~v~dk~~~~~m~~~~en~kIll~~~~Le~~k~e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~ 272 (513)
T 3iyg_B 193 GGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKH 272 (513)
T ss_pred CCCccceeEEeeEEEeccccCCCceeecCceEEEEcCCcccccccccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999965 69999999999999999998866 21
Q ss_pred --------------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEec
Q psy16434 460 --------------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLE 489 (745)
Q Consensus 460 --------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~ 489 (745)
++++++.||+|+++++..+|++++++|.|+
T Consensus 273 g~~vvi~~~~I~~~al~~L~~~~I~av~~~~~~~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~ 352 (513)
T 3iyg_B 273 GINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGV 352 (513)
T ss_pred CCCEEEEcCCccHHHHHHHHHcCceEEecCCHHHHHHHHHHhCCEEecccccCCHhHCCcccEEEEEEECCeEEEEEecC
Confidence 678889999999999999999999999999
Q ss_pred ccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------------
Q psy16434 490 AAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------------ 527 (745)
Q Consensus 490 ~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------------ 527 (745)
.. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 353 ~~-~~~~tI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe 431 (513)
T 3iyg_B 353 AL-GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALR 431 (513)
T ss_pred CC-CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEeCCcHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 86 78999999999999999999999999999999987
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhccccccee
Q psy16434 528 VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 528 ~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kI 607 (745)
.+|++|++|||+|+.+++++|++.|.++..++|||+.++ .+.||...|||||+.|+.++++.|++.+.|++++|++..
T Consensus 432 ~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g--~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~ 509 (513)
T 3iyg_B 432 MLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEG--TIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIK 509 (513)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeecCCCC--CccchHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999988877899999999 999999999999999999999999999999999998754
|
| >1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-70 Score=630.59 Aligned_cols=386 Identities=29% Similarity=0.479 Sum_probs=353.3
Q ss_pred ceeecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHH
Q psy16434 171 PAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGS 250 (745)
Q Consensus 171 ~~~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s 250 (745)
|..+++++.+..+| ++++.+|+.||.+|+++|+|||||+||||||+++.|+++|||||+||||+|+++||+|||++++|
T Consensus 7 ~~~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a 85 (545)
T 1a6d_A 7 PILVLKEGTQREQG-KNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVS 85 (545)
T ss_dssp ----------CEEH-HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECSSSCEEEECCHHHHHHHSCCCSHHHHHHHGGG
T ss_pred cccccCCcchhhch-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCcHHHHHHhhhccchHHHHHHHHH
Confidence 45578888888888 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHH
Q psy16434 251 QMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPS 330 (745)
Q Consensus 251 ~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~ 330 (745)
++||+++||| |||+|+||++||+++.+++++|+||+
T Consensus 86 ~~qd~e~GDG--------------------------------------------TTtvvvLA~~LL~~a~~ll~~GihP~ 121 (545)
T 1a6d_A 86 KAQDTAVGDG--------------------------------------------TTTAVVLSGELLKQAETLLDQGVHPT 121 (545)
T ss_dssp GCTTTCSTTH--------------------------------------------HHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred HhcCCEECCC--------------------------------------------hhHHHHHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCC--CCCCccce
Q psy16434 331 EIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGS--SSFNVDNV 407 (745)
Q Consensus 331 ~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~--~~~dl~~I 407 (745)
.|++||++|++.+++.|++++++ + .+++.|.++|+|+++||+.++ +++|++|+++|+.+++++.. ..+|++.|
T Consensus 122 ~I~~G~~~A~~~a~~~L~~~s~~---~-~~~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I 197 (545)
T 1a6d_A 122 VISNGYRLAVNEARKIIDEIAEK---S-TDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANI 197 (545)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEE---C-CCHHHHHHHHHHHTTTSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC---C-CCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcccCCCcccccceE
Confidence 99999999999999999999876 2 467899999999999999985 79999999999999986522 35888999
Q ss_pred EEEEccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC--------------------------
Q psy16434 408 RITKILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK-------------------------- 459 (745)
Q Consensus 408 ~I~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k-------------------------- 459 (745)
+|+++.|++++||++++||+|++++.| +|++++||||++++++||+.+++.+
T Consensus 198 ~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~l 277 (545)
T 1a6d_A 198 KVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMV 277 (545)
T ss_dssp EEEECCCSCSTTCEEESEEEESCCCSCTTSCSEEEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCceeeEEEeeEEEeccCCCCCCcceecCCEEEEEecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999986 4999999999999999999887632
Q ss_pred --------------------------------------------------------CCCCcccccccccEEEEEECCeeE
Q psy16434 460 --------------------------------------------------------TPPAASELGYADSVAVDELGDTAV 483 (745)
Q Consensus 460 --------------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsv 483 (745)
+++++++||+|+++++.++|++++
T Consensus 278 e~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~ 357 (545)
T 1a6d_A 278 EKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRM 357 (545)
T ss_dssp HHHHHTTCCEEEESSCBCHHHHHHHHHHTCEEECSCCHHHHHHHHHHHCCCEESSGGGCCGGGCEEEEEEEEEEETTEEE
T ss_pred HHHHHhCCCEEEECCCccHHHHHHHHHCCeeEeccCCHHHHHHHHHHhCCeeecccccCCHHHCCCceEEEEEEecCceE
Confidence 677889999999999999999999
Q ss_pred EEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------
Q psy16434 484 VVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------ 527 (745)
Q Consensus 484 ti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------ 527 (745)
++|.|+.. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 358 ~~~~g~~~-~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~a~~~g~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~ 436 (545)
T 1a6d_A 358 TFVMGCKN-PKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEA 436 (545)
T ss_dssp EEEEEESC-SSCEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred EEEecCCC-CceEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhhccCccHHHHHHH
Confidence 99999986 89999999999999999999999999999999987
Q ss_pred ------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcc
Q psy16434 528 ------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601 (745)
Q Consensus 528 ------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~ 601 (745)
.+|++|++|||+|+.+++++|++.|.++..++|||+.++ .+.||...+||||+.|+..+++.|++.+.|+++
T Consensus 437 ~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g--~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~ 514 (545)
T 1a6d_A 437 FAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNN--GVGDMKAKGVVDPLRVKTHALESAVEVATMILR 514 (545)
T ss_dssp HHHHHTHHHHHHHHHHTSCHHHHHHHHHHHHHTTCTTEEEETTTT--EEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcceecccC--ccccchhcCccccHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999987777899999999 999999999999999999999999999999999
Q ss_pred cccceee
Q psy16434 602 QTKAKIA 608 (745)
Q Consensus 602 IDn~kIl 608 (745)
+|++...
T Consensus 515 id~iI~~ 521 (545)
T 1a6d_A 515 IDDVIAS 521 (545)
T ss_dssp CCEEC--
T ss_pred HHHHHhc
Confidence 9986654
|
| >3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-72 Score=643.06 Aligned_cols=392 Identities=44% Similarity=0.708 Sum_probs=356.0
Q ss_pred eeecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHh
Q psy16434 172 AAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQ 251 (745)
Q Consensus 172 ~~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~ 251 (745)
..+|++|+++++|.++++.+|+.||.+|+++|+|||||+||||||+++.|+++|||||+||||+|+++||+|||++++|+
T Consensus 11 ~~~l~~~~~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP~Akll~e~a~ 90 (568)
T 3p9d_H 11 AGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMATE 90 (568)
T ss_dssp CSSCCSSCCBCCCHHHHHHHHHHHHHHHHHHHHTTSSSSSCEEEEECTTSCEEEESCHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hhhhhcCccccccHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHHHHHHHHHHH
Confidence 55789999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHH
Q psy16434 252 MQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSE 331 (745)
Q Consensus 252 ~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~ 331 (745)
+||+++||| |||+++||++||+++.+++++|+||+.
T Consensus 91 ~qd~e~GDG--------------------------------------------TTtvvvLa~~Ll~~a~~ll~~GihP~~ 126 (568)
T 3p9d_H 91 QQKIDMGDG--------------------------------------------TNLVMILAGELLNVSEKLISMGLSAVE 126 (568)
T ss_dssp HHHTTSSSC--------------------------------------------HHHHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred hhhceeCCC--------------------------------------------ceehHHHHHHHHHHHHHHHHCCCCHHH
Confidence 999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCC-----CCCCCCccc
Q psy16434 332 IVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPD-----GSSSFNVDN 406 (745)
Q Consensus 332 I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~-----~~~~~dl~~ 406 (745)
|++||++|++.++++|++++++...+..+++.|.++|+|+++||+.+++++|++|+++|+.+++++ ....+|++.
T Consensus 127 I~~G~~~A~~~a~e~L~~~a~~v~~~~~~~~~l~~va~tsl~sK~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~dl~~ 206 (568)
T 3p9d_H 127 IIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMIKPVISSKKYGSEDILSELVSEAVSHVLPVAQQAGEIPYFNVDS 206 (568)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSCCCCCCTTHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHTTSCC---------CCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHhhccccccCCcccccce
Confidence 999999999999999999988754455678899999999999999987899999999999999874 223588999
Q ss_pred eEEEEccCCCcccceeEeeEEEeecccCCceeee---CceEEEeccCCCccccccC------------------------
Q psy16434 407 VRITKILGSGLFNSEIVQGMVFKRSVEGDITKQT---KAKIAVYTCPVDIATTETK------------------------ 459 (745)
Q Consensus 407 I~I~ki~Ggs~~dS~lv~G~~l~~~~~~~~~~i~---nakIlil~~~Le~~k~e~k------------------------ 459 (745)
|+|+++.|++++||++++||+|++++.++|++++ ||||++++++||+.+++.+
T Consensus 207 I~I~k~~Ggs~~dS~lv~G~v~dk~~~~m~~~i~~~~n~kIlll~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~ 286 (568)
T 3p9d_H 207 IRVVKIMGGSLSNSTVIKGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDA 286 (568)
T ss_dssp CEEEEEESSCGGGCEEESSCCBSSCBSSGGGSCCCCSSCEEEEECSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHH
T ss_pred EEEEEccCCCcchheeeccEEEeecccCCcEEEecCCcceEEEEccCccccccccCceEEeCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 9999999999999887532
Q ss_pred ----------------------------------------------------------CCCCcccccccccEEEEEECCe
Q psy16434 460 ----------------------------------------------------------TPPAASELGYADSVAVDELGDT 481 (745)
Q Consensus 460 ----------------------------------------------------------~~p~a~~LG~a~~vq~~eiGdt 481 (745)
++++++.||+|+.+++.++|++
T Consensus 287 ~v~~I~~~g~~vvi~~~~I~~~al~~L~~~gI~av~~v~~~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~~ 366 (568)
T 3p9d_H 287 MMKEIADMGVECIVAGAGVGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGD 366 (568)
T ss_dssp HHHHHHHTTCCEEEECSCCCHHHHHHHHHHTCEEECCCCHHHHHHHHHHHSCCCCSSSSCCCGGGCEECSCCCCCEETTE
T ss_pred HHHHHHhcCCeEEEECCCcChHHHHHHHHCCeEEEecCCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEecCc
Confidence 7788899999999999999999
Q ss_pred eEEEEEeccc-ccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH---------------------------------
Q psy16434 482 AVVVFKLEAA-ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK--------------------------------- 527 (745)
Q Consensus 482 svti~~g~~l-~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~--------------------------------- 527 (745)
++++|+|+.. .++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 367 ~~~~~~g~~~l~~~~~TIllrG~t~~~l~E~er~i~DAL~vvr~av~~~d~~iVpGGGa~E~~ls~~L~~~a~~~~g~eq 446 (568)
T 3p9d_H 367 RVTVFKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQ 446 (568)
T ss_dssp ECBCCCCCSSSCCSSCEEEEEESCHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCTTTHHHHHHHHHHHHHHHTCCSTHH
T ss_pred eEEEEecCCCCCCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHhcccCCeEEeCCcHHHHHHHHHHHHHhccCCcHHH
Confidence 9999999872 388999999999999999999999999999998853
Q ss_pred -----------HHHHHHHhhccchhhHHHHHHHHHhhc--------CCccceeeecCCCcc---eeecccccccccccch
Q psy16434 528 -----------VFVKTLAENTGVKSNEVISKLYSAHNE--------GKKTYGFDINGENSS---VIDAAEAGILDLYLTK 585 (745)
Q Consensus 528 -----------~IPr~LaeNAGld~~~vlsKL~~~h~~--------g~~~~GIDl~~~~ik---I~dm~g~gI~Ds~lVk 585 (745)
.+|++||+|||+|+.+++++|++.|.. +..++|||+.++ . +.||...|||||+.|+
T Consensus 447 ~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~~~~G~d~~~g--~~~~~~d~~~~gI~dp~~vk 524 (568)
T 3p9d_H 447 LAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDGE--SDEGVKDIREENIYDMLATK 524 (568)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHTCCHHHHHHHHHHCCCCSSCCCCCCTTSSSCCCHHHH--TCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhcccccccCCCceeEcccCC--CcccccChHHccCEEcHHHH
Confidence 679999999999999999999998865 556799999988 7 9999999999999999
Q ss_pred hhHhhhhhhcchhhcccccceeee
Q psy16434 586 MWALKYATSAANTILQQTKAKIAV 609 (745)
Q Consensus 586 G~vL~~A~e~a~mil~IDn~kIll 609 (745)
..+|+.|++.+.|++++|++....
T Consensus 525 ~~al~~A~e~a~~iL~iD~ii~~~ 548 (568)
T 3p9d_H 525 KFAINVATEAATTVLSIDQIIMAK 548 (568)
T ss_dssp HHHHHCCEECBCCC----------
T ss_pred HHHHHHHHHHHHHHHhHHHHhhcc
Confidence 999999999999999999987643
|
| >3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-70 Score=624.20 Aligned_cols=381 Identities=28% Similarity=0.449 Sum_probs=354.2
Q ss_pred cccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhc
Q psy16434 179 DKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMG 258 (745)
Q Consensus 179 ~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~G 258 (745)
.++++| .+++.+|+.||.+|+++|+|||||+||||||+++.|+++|||||+||||+|+++||+|||++++|++||+++|
T Consensus 4 ~~~~~g-~~~~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~~~G 82 (518)
T 3iyg_D 4 QDRDKP-AQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAG 82 (518)
T ss_pred ccchhh-HHHHHHHHHHHHHHHHHHHhccCCCCCceeeeCCCCCeEEECCHHHHHHHcccchHHHHHHHHHHHHhhhhhC
Confidence 345677 5899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy16434 259 DGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKL 338 (745)
Q Consensus 259 DGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~ 338 (745)
|| |||+++||++||++|.+++++|+||+.|++||++
T Consensus 83 DG--------------------------------------------TTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~ 118 (518)
T 3iyg_D 83 DG--------------------------------------------TTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQK 118 (518)
T ss_pred CC--------------------------------------------ceeHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99 9999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCC-CCCCCCccceEEEEccCCC
Q psy16434 339 ALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPD-GSSSFNVDNVRITKILGSG 416 (745)
Q Consensus 339 a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~-~~~~~dl~~I~I~ki~Ggs 416 (745)
|++.+++.|++++++. +..+++.|.++|+||++||+.++ .++|++|+++|+.++++. ..+.+|+++|+|+++.|++
T Consensus 119 A~~~a~~~L~~~s~~v--~~~~~~~l~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~~~~d~~~I~V~k~~Gg~ 196 (518)
T 3iyg_D 119 ALEKGIEILTDMSRPV--ELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGT 196 (518)
T ss_pred HHHHHHHHHHHheeeC--CCCChHHHHHHhHhhhccccchhhHHHHHHHHHHHHHHhhccccCCCcccceEEEEEcCCCC
Confidence 9999999999998773 34478899999999999999974 799999999999999852 2467999999999999999
Q ss_pred cccceeEeeEEEeeccc-CCceeeeCceEEEeccCCCccccccC------------------------------------
Q psy16434 417 LFNSEIVQGMVFKRSVE-GDITKQTKAKIAVYTCPVDIATTETK------------------------------------ 459 (745)
Q Consensus 417 ~~dS~lv~G~~l~~~~~-~~~~~i~nakIlil~~~Le~~k~e~k------------------------------------ 459 (745)
+.||++++||+|++++. .+|++++||||++++++||+++.+.+
T Consensus 197 ~~ds~lv~G~~~dk~~~~~mp~~i~n~kIlll~~~Le~~k~~~~~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~l 276 (518)
T 3iyg_D 197 IDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNV 276 (518)
T ss_pred hhhheEeccEEEecccccCCCccccCceEEEEEeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 48999999999999999998764310
Q ss_pred ---------------------------------------------------CCCCcccccccccEEEEEECC-eeEEEEE
Q psy16434 460 ---------------------------------------------------TPPAASELGYADSVAVDELGD-TAVVVFK 487 (745)
Q Consensus 460 ---------------------------------------------------~~p~a~~LG~a~~vq~~eiGd-tsvti~~ 487 (745)
++++++.||+|+++++.++|+ +++++|+
T Consensus 277 vi~~k~i~~~~I~~~Al~~L~~~~I~av~~~~~~~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~~g~~~~~~~~~ 356 (518)
T 3iyg_D 277 LLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKIT 356 (518)
T ss_pred EEEeccccccCcCHHHHHHHHHcCcEEEecCCHHHHHHHHHHhCCEEecccccCCHHHCCcCcEEEEEEeCCCceEEEEE
Confidence 677889999999999999999 7999999
Q ss_pred ecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------------------------------
Q psy16434 488 LEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------------------------------- 527 (745)
Q Consensus 488 g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------------------------------- 527 (745)
|++.+++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 357 g~~~~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~A 436 (518)
T 3iyg_D 357 GCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADA 436 (518)
T ss_pred CCCCCCceEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEeecCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 9986578999999999999999999999999999999987
Q ss_pred --HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccc
Q psy16434 528 --VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKA 605 (745)
Q Consensus 528 --~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~ 605 (745)
.+|++|++|||+|+.+++++|++.|..+..++|||+.++ .+.||...|||||+.|+..+++.|++.+.|++++|++
T Consensus 437 Le~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g--~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~i 514 (518)
T 3iyg_D 437 MEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKG--GISNILEELVVQPLLVSVSALTLATETVRSILKIDDV 514 (518)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCceeEeCCCC--cccchhhccCEEcHHHHHHHHHHHHHHHHHHHhhcce
Confidence 578999999999999999999999988777899999999 9999999999999999999999999999999999998
Q ss_pred eee
Q psy16434 606 KIA 608 (745)
Q Consensus 606 kIl 608 (745)
..+
T Consensus 515 i~~ 517 (518)
T 3iyg_D 515 VNT 517 (518)
T ss_pred Eec
Confidence 653
|
| >3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-71 Score=638.44 Aligned_cols=385 Identities=26% Similarity=0.401 Sum_probs=352.9
Q ss_pred ceeecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHH
Q psy16434 171 PAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGS 250 (745)
Q Consensus 171 ~~~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s 250 (745)
|..+|++++++.+| .+++.+|+.||.+|+++|+|||||+||||||+++.|+++|||||+||||+|+++||+|||++++|
T Consensus 9 ~~~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP~Akll~e~a 87 (550)
T 3p9d_G 9 TIVVLKEGTDASQG-KGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTLVDIS 87 (550)
T ss_dssp -------CCCEEES-HHHHHHHHHHHHHHHTTTGGGSTTTCCCEEEECSSSCEEEECCHHHHTTTSCCCSHHHHHHHHHH
T ss_pred chhhhcCCcchhhh-HHHHHHHHHHHHHHHHHHHhccCCCCCcEEEECCCCCeEEECCHHHHHHHccCCCHHHHHHHHHH
Confidence 67789999999999 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHH
Q psy16434 251 QMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPS 330 (745)
Q Consensus 251 ~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~ 330 (745)
++||+++||| |||+|+||++||+++.++++.|+||+
T Consensus 88 ~~qd~e~GDG--------------------------------------------TTtvvVLA~~Ll~~a~~lv~~GihP~ 123 (550)
T 3p9d_G 88 RAQDAEVGDG--------------------------------------------TTSVTILAGELMKEAKPFLEEGISSH 123 (550)
T ss_dssp HHHHTTTSSC--------------------------------------------HHHHHHHHHHHHHTTSHHHHSSSCTT
T ss_pred HHhhhhhCCC--------------------------------------------ceehHHHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccCcc---cccccceeeeccccccCC-ChhhHHHHHHHHHHhhcCCCCCCCCccc
Q psy16434 331 EIVNGYKLALAKTLEILPTLTCFEVKDVRN---VENVTKGIKSAIMSKQYG-NEDFLTDLITKACVSILPDGSSSFNVDN 406 (745)
Q Consensus 331 ~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~---~~~L~~va~tsl~sK~~~-~~~~ls~LivdAv~~v~~~~~~~~dl~~ 406 (745)
.|++||++|++.+++.|++++++.. ..+ ++.|.++|+|+++||+++ ++++|++|+++|+.++++ ..+|+++
T Consensus 124 ~I~~G~~~A~~~a~~~L~~~s~~v~--~~~~~~~~~L~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~---~~~dl~~ 198 (550)
T 3p9d_G 124 LIMKGYRKAVSLAVEKINELAVDIT--SEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLSLDR---NDLDDKL 198 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHSEECCC--CC------CHHHHHHHHHHHTTTGGGHHHHHHHHHHHHHHCCS---SSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCC--CCcchhHHHHHHHHHHhccCccccccHhHHHHHHHHHHHHhCc---cccCchh
Confidence 9999999999999999999987732 223 788999999999999997 579999999999999985 3588999
Q ss_pred eEEEEccCCCcccceeEeeEEEeecccC-----CceeeeCceEEEeccCCCccccccC----------------------
Q psy16434 407 VRITKILGSGLFNSEIVQGMVFKRSVEG-----DITKQTKAKIAVYTCPVDIATTETK---------------------- 459 (745)
Q Consensus 407 I~I~ki~Ggs~~dS~lv~G~~l~~~~~~-----~~~~i~nakIlil~~~Le~~k~e~k---------------------- 459 (745)
|+|+++.|++++||++++||+|++++.| +|++++||||++++++||+.+++.+
T Consensus 199 I~Vikv~Gg~~~ds~lv~G~~~dk~~~s~yf~~~~~~~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l 278 (550)
T 3p9d_G 199 IGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLI 278 (550)
T ss_dssp CCCCBCCSSCGGGCCCCSSEEECCCSSCTTCSCSCSCCSSCCEEEECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHH
T ss_pred eeEEEecCCCccceeEEeeEEEeccccccccccCcccccCceEEEeccccccccccccceeeeCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875 5899999999999999998776531
Q ss_pred ------------------------------------------------------------CCCCcccccccccEEEEEEC
Q psy16434 460 ------------------------------------------------------------TPPAASELGYADSVAVDELG 479 (745)
Q Consensus 460 ------------------------------------------------------------~~p~a~~LG~a~~vq~~eiG 479 (745)
++++++.||+|+.+++.++|
T Consensus 279 ~~~v~~I~~~g~~vVi~~~~I~dla~~~L~~~gI~~v~~v~k~~lerIa~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig 358 (550)
T 3p9d_G 279 FEKLRQVEETGANIVLSKLPIGDLATQFFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIG 358 (550)
T ss_dssp HHHHHHHHTTTCSEEEESSCCCHHHHHTTGGGTCEEEECCCTTHHHHHHHHTCCCCBSSGGGCCGGGCCCCSBCCCCCCS
T ss_pred HHHHHHHHhcCCCEEEECCCccHHHHHHHHHcCCccccCcCHHHHHHHHHHhCCceecchhhCCHHHcCCceEEEEEEeC
Confidence 56788999999999999999
Q ss_pred CeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH--------------------------------
Q psy16434 480 DTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK-------------------------------- 527 (745)
Q Consensus 480 dtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~-------------------------------- 527 (745)
++++++|+|+.. ++++||++||+|+.+++|.+|+++|||++++++++
T Consensus 359 ~e~~~~~~g~~~-~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~ 437 (550)
T 3p9d_G 359 SERYNLFQGCPQ-AKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQM 437 (550)
T ss_dssp SSCCEEEBCCTT-CCCCCCCBCSSSHHHHHHHHHHHHHHHHHHHHHHHSCCEEETTTHHHHHHHHHHHHHHHTCCSTTHH
T ss_pred CeEEEEEecCCC-CceeEEEEeCCcHHHHHHHHHHHHhHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhhcCChHHHH
Confidence 999999999986 88999999999999999999999999999999987
Q ss_pred ----------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcch
Q psy16434 528 ----------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAAN 597 (745)
Q Consensus 528 ----------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~ 597 (745)
.+|++|++|||+|+.+++++|++.|.++..++|||+.++ ++.||...|||||+.|+..+|+.|++.+.
T Consensus 438 ~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g--~~~dm~~~gI~dp~~vk~~al~~A~~~a~ 515 (550)
T 3p9d_G 438 IINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEKWYGVVFETE--NIGDNFAKFVWEPALVKINALNSATEATN 515 (550)
T ss_dssp HHHHHHHHHTHHHHHHHHTSCSCHHHHHHHHHHHHHHSCSCCCBCSSSS--SBCCHHHHTCEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeeeCCCC--cccchHhccCEecHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999977777899999999 99999999999999999999999999999
Q ss_pred hhcccccceee
Q psy16434 598 TILQQTKAKIA 608 (745)
Q Consensus 598 mil~IDn~kIl 608 (745)
|++++|++...
T Consensus 516 ~iL~id~ii~~ 526 (550)
T 3p9d_G 516 LILSVDETITN 526 (550)
T ss_dssp HHHTEEEEECC
T ss_pred HHHhHHHHhhC
Confidence 99999988653
|
| >3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-70 Score=628.51 Aligned_cols=384 Identities=27% Similarity=0.455 Sum_probs=355.5
Q ss_pred cccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhh
Q psy16434 175 FQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQE 254 (745)
Q Consensus 175 ~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd 254 (745)
|+++.+..+| ++++.+|+.||.+|+++|+|||||+||||||+++.|+++|||||+||||+|+++||+|||++++|++||
T Consensus 13 ~~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd 91 (559)
T 3p9d_A 13 LFLGGEKISG-DDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQD 91 (559)
T ss_dssp CCSSCEEEET-HHHHHHHHHHHHHHHHHTTTTSSTTCCEEEECCSSSCCCEECCHHHHHHHHCCCSHHHHHHHHHHHHHH
T ss_pred hhccccccch-HHHHHHHHHHHHHHHHHHHhccCCCCCeeEeEcCCCCEEEECCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 5677888889 689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHH
Q psy16434 255 EEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVN 334 (745)
Q Consensus 255 ~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~ 334 (745)
+++||| |||+|+||++||++|.+++++|+||+.|++
T Consensus 92 ~e~GDG--------------------------------------------TTtvvVLA~~LL~~a~~li~~GihP~~I~~ 127 (559)
T 3p9d_A 92 REIGDG--------------------------------------------TTSVVIIASELLKRANELVKNKIHPTTIIT 127 (559)
T ss_dssp HHTSSC--------------------------------------------HHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHcCCC--------------------------------------------cchHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc-ccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcC-C--CCCCCCccceEE
Q psy16434 335 GYKLALAKTLEILPT-LTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILP-D--GSSSFNVDNVRI 409 (745)
Q Consensus 335 g~~~a~~~~l~~L~~-~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~-~--~~~~~dl~~I~I 409 (745)
||++|++.+++.|++ ++.+. +..+++.|.++|+|+++||++++ +++|++|+++|+.++++ + ..+.+|+++|+|
T Consensus 128 G~~~A~~~a~~~L~~~~s~~v--~~~~~e~L~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~~~~~i~l~~I~I 205 (559)
T 3p9d_A 128 GFRVALREAIRFINEVLSTSV--DTLGKETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNV 205 (559)
T ss_dssp HHHHHHHHHHHHHHHHTGGGS--CC--CTTHHHHHHHTTSSSGGGTTHHHHHHHHHHHHHHHCCEESSSCEECCTTCCCE
T ss_pred HHHHHHHHHHHHHHHhcccCC--CCCCHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcccccCCCCccchhHeEE
Confidence 999999999999999 88773 33467899999999999999985 79999999999999985 2 135789999999
Q ss_pred EEccCCCcccceeEeeEEEeecccC--Cceeee--CceEEEeccCCCccccccC--------------------------
Q psy16434 410 TKILGSGLFNSEIVQGMVFKRSVEG--DITKQT--KAKIAVYTCPVDIATTETK-------------------------- 459 (745)
Q Consensus 410 ~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~--nakIlil~~~Le~~k~e~k-------------------------- 459 (745)
+++.|++++||++++||+|++++.+ +|++++ ||||++++++|++.+++.+
T Consensus 206 ~k~~Ggs~~ds~lv~G~v~dk~~~~~~m~~~ie~~n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~l 285 (559)
T 3p9d_A 206 LKAHGKSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERV 285 (559)
T ss_dssp EEEESSCSSCCBCCSEECCCCCCSSTTSCSEECSSSBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred EEecCCCccceeEeccEEEeecccCCCcceeeccCCceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987 599999 9999999999998776421
Q ss_pred --------------------------------------------------------------CCCCcccccccccEEEEE
Q psy16434 460 --------------------------------------------------------------TPPAASELGYADSVAVDE 477 (745)
Q Consensus 460 --------------------------------------------------------------~~p~a~~LG~a~~vq~~e 477 (745)
++++++.||+|+++++.+
T Consensus 286 e~I~~~g~~lvI~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~TGa~iis~~~~l~~~e~~~~~~LG~a~~v~~~~ 365 (559)
T 3p9d_A 286 KKIIDAGAQVVLTTKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAK 365 (559)
T ss_dssp HHHHTTCCSEEEESSCCCGGGTHHHHHTTCEEESSCCHHHHHHHHHHSSCCCBCCSCCSTTCCCCCTTTSCCEEEEEEEE
T ss_pred HHHHhhCCCEEEEcCCCCHHHHHHHHHcCCceEccCCHHHHHHHHHHhCCEEEeccccccccccCCHhHCccceEEEEEE
Confidence 256788999999999999
Q ss_pred ECCeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------
Q psy16434 478 LGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------ 527 (745)
Q Consensus 478 iGdtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------ 527 (745)
+|++++++|.|+.. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 366 ig~~~~~~~~g~~~-~~~~tI~lrG~te~~l~E~kr~l~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~e 444 (559)
T 3p9d_A 366 FSDDECILIKGTSK-HSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATTVGSRE 444 (559)
T ss_dssp CSSCEEECEEEESS-SCCCCEEEEESCHHHHHHHHHHHHHHHHHHHHHHTSSCEECTTTTHHHHHHHHHHHHHTTSCTTH
T ss_pred EcCceEEEEEcCCC-CCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCEEeCccHHHHHHHHHHHHHhcccChHH
Confidence 99999999999987 88999999999999999999999999999999987
Q ss_pred ------------HHHHHHHhhccchhhHHHHHHHHHhhcCCc------------cceeeecCCCcceeeccccccccccc
Q psy16434 528 ------------VFVKTLAENTGVKSNEVISKLYSAHNEGKK------------TYGFDINGENSSVIDAAEAGILDLYL 583 (745)
Q Consensus 528 ------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~------------~~GIDl~~~~ikI~dm~g~gI~Ds~l 583 (745)
.+|++|++|||+|+.+++++|++.|..+.. ++|||+.++ .+.||...|||||+.
T Consensus 445 q~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~~~~~~~~~~~~~G~d~~~g--~~~dm~~~gI~dp~~ 522 (559)
T 3p9d_A 445 QLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAASQMAKPEDVKRRSYRNYGLDLIRG--KIVDEIHAGVLEPTI 522 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHTTSCCC----CCCCCCCEEECTTSS--SEEESTTSSCCEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhccccccccccccccccceeEECCCC--cEeehhhccCEecHH
Confidence 578999999999999999999999876644 789999999 999999999999999
Q ss_pred chhhHhhhhhhcchhhcccccceee
Q psy16434 584 TKMWALKYATSAANTILQQTKAKIA 608 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~kIl 608 (745)
|+..+|+.|++.+.|++++|++...
T Consensus 523 vk~~al~~A~e~a~~iL~id~ii~~ 547 (559)
T 3p9d_A 523 SKVKSLKSALEACVAILRIDTMITV 547 (559)
T ss_dssp HHHHHHHHHHHHHHHHHTEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhhc
Confidence 9999999999999999999988654
|
| >3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-70 Score=620.11 Aligned_cols=380 Identities=26% Similarity=0.437 Sum_probs=353.0
Q ss_pred ccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcC
Q psy16434 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGD 259 (745)
Q Consensus 180 ~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GD 259 (745)
++.+| .+++.+|+.||..|+++|+|||||+||||||+++.|+++|||||+||||+|+++||+|||++++|++||+++||
T Consensus 4 ~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~g~~~iTnDG~tIlk~i~~~hP~Akll~~~a~~qd~~~GD 82 (515)
T 3iyg_E 4 SRLMG-LEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD 82 (515)
T ss_pred hhhch-HHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEcCCCCeEEeCcHHHHHHHcccCCHHHHHHHHHHHHhhhhhCC
Confidence 45667 58999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q psy16434 260 GTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLA 339 (745)
Q Consensus 260 Gt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a 339 (745)
| |||+++||++||++|.+++++|+||+.|++||++|
T Consensus 83 G--------------------------------------------TTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A 118 (515)
T 3iyg_E 83 G--------------------------------------------TTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQA 118 (515)
T ss_pred c--------------------------------------------hhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcc
Q psy16434 340 LAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLF 418 (745)
Q Consensus 340 ~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~ 418 (745)
++.+++.|++++++...+..+++.|.++|+||++||.++. .++|++++++|+..+.+.....+|+++|+|+++.|+++.
T Consensus 119 ~~~a~~~L~~~s~~v~~~~~~~~~l~~vA~tsl~sK~i~~~~~~l~~l~~dav~~V~~~~~~~~d~~~I~I~k~~Ggs~~ 198 (515)
T 3iyg_E 119 ARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLE 198 (515)
T ss_pred HHHHHHHHHHhceecCCCccCHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhhcccccCCCCcccEEEEEecCCCcc
Confidence 9999999999988754444567889999999999999884 799999999999999764344688999999999999999
Q ss_pred cceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC-------------------------------------
Q psy16434 419 NSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK------------------------------------- 459 (745)
Q Consensus 419 dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k------------------------------------- 459 (745)
||++++||+|++++.| +|+.++||+|++++++|++.+++.+
T Consensus 199 ds~lv~G~~~dk~~~~~~m~~~~~~~kIall~~~le~~k~~~~~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vv 278 (515)
T 3iyg_E 199 DTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLA 278 (515)
T ss_pred cceEEeeEEEecccccccccccCCCceEEEEcCccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999986 5999999999999999998865421
Q ss_pred ---------------------------------------------CCCCcccccccccEEEEEECC--eeEEEEEecccc
Q psy16434 460 ---------------------------------------------TPPAASELGYADSVAVDELGD--TAVVVFKLEAAE 492 (745)
Q Consensus 460 ---------------------------------------------~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~ 492 (745)
+++++++||+|+++++.++|+ +++++|+|+..
T Consensus 279 i~~~~I~~~al~~L~~~~I~~v~~v~k~~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~k~~~~~~~g~~~- 357 (515)
T 3iyg_E 279 VCQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKN- 357 (515)
T ss_pred EEeCCCCHHHHHHHHHCCCEEEeccCHHHHHHHHHHhCCEEecccccCCHHHCCcceEEEEEEeccccceEEEEEcCCC-
Confidence 778889999999999999998 89999999987
Q ss_pred cceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------------HHH
Q psy16434 493 SRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------------VFV 530 (745)
Q Consensus 493 ~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------------~IP 530 (745)
++++||++||+|+.+++|.+|+++||+++++++++ .+|
T Consensus 358 ~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip 437 (515)
T 3iyg_E 358 SRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIP 437 (515)
T ss_pred CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999987 578
Q ss_pred HHHHhhccchhhHHHHHHHHHhhc-CCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhccccccee
Q psy16434 531 KTLAENTGVKSNEVISKLYSAHNE-GKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 531 r~LaeNAGld~~~vlsKL~~~h~~-g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kI 607 (745)
++|++|||+|+.+++++|++.|.. +..++|||+.++ .+.||...|||||+.|+.++|+.|++.+.|++++|++..
T Consensus 438 ~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g--~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~ 513 (515)
T 3iyg_E 438 MALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHK--GTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRK 513 (515)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhccCCCeeeEecCCC--cccchHhccCEEcHHHHHHHHHHHHHHHHHHHhHHHhhc
Confidence 999999999999999999999875 456799999999 999999999999999999999999999999999998754
|
| >3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-71 Score=628.94 Aligned_cols=385 Identities=26% Similarity=0.426 Sum_probs=357.4
Q ss_pred cccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhh
Q psy16434 175 FQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQE 254 (745)
Q Consensus 175 ~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd 254 (745)
+..+.+..+| ++++.+|+.||..|+++|+|||||+||||||+++.|+++|||||+||||+|+++||+|+|++++|++||
T Consensus 8 ~~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~qd 86 (528)
T 3p9d_D 8 NATFKNKEKP-QEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQD 86 (528)
T ss_dssp CCSSCBCCCH-HHHHHHHHHHHHHHHHHHTTTSSTTCCCEEEECSSCCEEEECCHHHHHHHSCCCCTTHHHHHHHHHHHH
T ss_pred ccccchhcch-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEECCHHHHHHHcccCCHHHHHHHHHHHHhh
Confidence 4556667778 689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHH
Q psy16434 255 EEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVN 334 (745)
Q Consensus 255 ~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~ 334 (745)
+++||| |||+++||++||+++.+++++|+||+.|++
T Consensus 87 ~e~GDG--------------------------------------------TTtvvVLA~~Ll~~a~~li~~GihP~~I~~ 122 (528)
T 3p9d_D 87 SEAGDG--------------------------------------------TTSVVILTGALLGAAERLLNKGIHPTIIAD 122 (528)
T ss_dssp HHTCSC--------------------------------------------SHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred hhhCCC--------------------------------------------hhhHHHHHHHHHHHHHHHHHCCCChHHHHH
Confidence 999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCC-ChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEcc
Q psy16434 335 GYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYG-NEDFLTDLITKACVSILPDGSSSFNVDNVRITKIL 413 (745)
Q Consensus 335 g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~-~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~ 413 (745)
||++|++.+++.|++++++. +..+++.|.++|+||++||+++ ++++|++|+++|+.++++...+.+|+++|+|+++.
T Consensus 123 G~~~A~~~a~~~L~~~s~~v--~~~~~e~l~~va~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~~i~v~~I~I~k~~ 200 (528)
T 3p9d_D 123 SFQSAAKRSVDILLEMCHKV--SLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKV 200 (528)
T ss_dssp HHHHHHHHHHHHHHTTCCCC--CSCCHHHHHHHHHHHSCSSSCSTTHHHHHHHHHHHHHTTCCTTTTCCCGGGSBCCCCC
T ss_pred HHHHHHHHHHHHHHHhhCCC--CCCCHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHhccccCCccceEEEEEEEec
Confidence 99999999999999998773 3347889999999999999998 48999999999999998743467999999999999
Q ss_pred CCCcccceeEeeEEEeecccC---CceeeeCceEEEeccCCCccccccC-------------------------------
Q psy16434 414 GSGLFNSEIVQGMVFKRSVEG---DITKQTKAKIAVYTCPVDIATTETK------------------------------- 459 (745)
Q Consensus 414 Ggs~~dS~lv~G~~l~~~~~~---~~~~i~nakIlil~~~Le~~k~e~k------------------------------- 459 (745)
|++++||++++||+|++++.| ||++++||||++++++|++.+++.+
T Consensus 201 Gg~~~ds~lv~G~v~dk~~~~~~~m~~~ien~kIll~~~~le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~ 280 (528)
T 3p9d_D 201 GGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKK 280 (528)
T ss_dssp SSCSCCCEEESSCBCCCCCCCSSSCCSEESSEEEEEECCCSSCCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHH
T ss_pred CCCccceEEEeeeEEeecccCcccCcccccCceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999975 6899999999999999998765311
Q ss_pred --------------------------------------------------------CCCCcccccccccEEEEEECCeeE
Q psy16434 460 --------------------------------------------------------TPPAASELGYADSVAVDELGDTAV 483 (745)
Q Consensus 460 --------------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsv 483 (745)
++++++.||+|+++++.++|++++
T Consensus 281 ~g~~vvi~~~~I~~~a~~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~ii~~~~~l~~~~LG~a~~v~~~~ig~~~~ 360 (528)
T 3p9d_D 281 AKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKI 360 (528)
T ss_dssp TTCCEEEESSCSCTTSCSCHHHHHHTTTSCCEEECCCTHHHHHHHHHHTCCCCSCSTTCCSSSEEEESCEECCEETTEEC
T ss_pred cCCCEEEEeCCcccccCCHHHHHHHHHcCcEEEEeCCHHHHHHHHHHHCCEEecccccCCHHHCCcccEEEEEEECCEEE
Confidence 677889999999999999999999
Q ss_pred EEEEecc--cccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------------------------
Q psy16434 484 VVFKLEA--AESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------------------------- 527 (745)
Q Consensus 484 ti~~g~~--l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------------------------- 527 (745)
++|.|+. ..++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 361 ~~i~g~~~~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i 440 (528)
T 3p9d_D 361 VRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIW 440 (528)
T ss_dssp CBCTTBCCGGGCCCCEEECCCSSTTHHHHHHHHHTTTHHHHHHHHHSSCEEETTTHHHHHHHHHHHHCCTTSCHHHHTTH
T ss_pred EEEEcccccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHHHHhhccChHHHHHH
Confidence 9999986 3267899999999999999999999999999999987
Q ss_pred --------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhh
Q psy16434 528 --------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTI 599 (745)
Q Consensus 528 --------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mi 599 (745)
.+|++||+|||+|+.+++++|++.|.++..++|||+.++ ++.||...|||||+.|+..+++.|++.+.|+
T Consensus 441 ~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g--~~~dm~~~gI~dp~~vk~~al~~A~e~a~~i 518 (528)
T 3p9d_D 441 QEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGELNDGISVRRS--GTTNTYEEHILQPVLVSTSAITLASECVKSI 518 (528)
T ss_dssp HHHHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCSSSCCCCCCSSSS--SCCCHHHHCCEEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCccceecCCC--CccchHhccCeecHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999887777899999999 9999999999999999999999999999999
Q ss_pred cccccceee
Q psy16434 600 LQQTKAKIA 608 (745)
Q Consensus 600 l~IDn~kIl 608 (745)
+++|++..+
T Consensus 519 L~iD~ii~~ 527 (528)
T 3p9d_D 519 LRIDDIAFS 527 (528)
T ss_dssp HHCSCCCBC
T ss_pred HhhhHheec
Confidence 999998653
|
| >3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-69 Score=622.67 Aligned_cols=390 Identities=25% Similarity=0.395 Sum_probs=353.6
Q ss_pred ceeecccc--cccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHH
Q psy16434 171 PAAIFQYY--DKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIIL 248 (745)
Q Consensus 171 ~~~~~~~~--~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~ 248 (745)
|..++.++ .+..+| ++++.+|+.||..|+++|+|||||+||||||+++.|+++|||||+||||+|+++||+|||+++
T Consensus 28 ~~~~~~~~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e 106 (562)
T 3p9d_E 28 PFIIVKDQGNKKRQHG-LEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQ 106 (562)
T ss_dssp --CCCSSBCCCSCSHH-HHHHHHHHHHHHHHHHHTTTSSSTTCCEEEEECSSSCEEEESCHHHHHHHSCCCSHHHHHHHH
T ss_pred CeEEeccCCcceecch-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCEEEECCHHHHHHHccCCCHHHHHHHH
Confidence 44555554 244567 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCC
Q psy16434 249 GSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLT 328 (745)
Q Consensus 249 ~s~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gih 328 (745)
+|++||+++||| |||+++||++||++|.+++++|+|
T Consensus 107 ~a~~qd~e~GDG--------------------------------------------TTtvvVLA~~LL~~a~~li~~Gih 142 (562)
T 3p9d_E 107 LSKSQDDEIGDG--------------------------------------------TTGVVVLASALLDQALELIQKGIH 142 (562)
T ss_dssp HHHHHHHHTSSC--------------------------------------------TTHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhhcCCC--------------------------------------------cccHHHHHHHHHHHHHHHHHCCCC
Confidence 999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccCccc--ccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCcc
Q psy16434 329 PSEIVNGYKLALAKTLEILPTLTCFEVKDVRNV--ENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVD 405 (745)
Q Consensus 329 P~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~--~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~ 405 (745)
|+.|++||++|++.+++.|++++++...+..++ +.|.++|+||++||+++. .++|++++++|+..+.+...+.+|++
T Consensus 143 P~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~e~L~~vA~tSl~sK~i~~~~d~la~l~vdAV~~V~~~~~~~~d~~ 222 (562)
T 3p9d_E 143 PIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDRKDVDFD 222 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTSSSSBCCCSSCHHHHHHHHHHHHSSSTTTTTHHHHHHHHHHHHHTSSTTTCSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcCCCcchhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHheeecccccCCCCcc
Confidence 999999999999999999999987743322222 689999999999999984 79999999999999976434578999
Q ss_pred ceEEEEccCCCcccceeEeeEEEeecccC--Cceee------eCceEEEeccCCCccccccC------------------
Q psy16434 406 NVRITKILGSGLFNSEIVQGMVFKRSVEG--DITKQ------TKAKIAVYTCPVDIATTETK------------------ 459 (745)
Q Consensus 406 ~I~I~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i------~nakIlil~~~Le~~k~e~k------------------ 459 (745)
+|+|+++.|+++.||++++||+|++++.| +|+.+ +|++|++++++|++.+++.+
T Consensus 223 ~I~I~k~~Ggs~~ds~lveGmv~dk~~~sp~m~~~~~~~~~~~~~kIall~~~le~~k~~~~~~~~Iss~~~~~~~~~~E 302 (562)
T 3p9d_E 223 LIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYE 302 (562)
T ss_dssp CCEEEEESSSCGGGCEEESSEEESSCCCTTSCCC-----TTCSSCEECEEESCCSSCCCSSCCCCCCCSSSHHHHHHHHH
T ss_pred cEEEEEecCCChhhhceeeeEEEecCCCCCCcCcccccccccccceEEEecccccccccccCceEEECCHHHHHHHHHHH
Confidence 99999999999999999999999999986 48888 89999999999999876421
Q ss_pred ----------------------------------------------------------------CCCCcccccccccEEE
Q psy16434 460 ----------------------------------------------------------------TPPAASELGYADSVAV 475 (745)
Q Consensus 460 ----------------------------------------------------------------~~p~a~~LG~a~~vq~ 475 (745)
++++++.||+|+++++
T Consensus 303 ~~~l~~~lekI~~~g~~vvI~~~~I~~~Al~~L~~~~I~~v~~v~k~~le~ia~~TGa~iis~l~~l~~~~LG~a~~v~~ 382 (562)
T 3p9d_E 303 QDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYE 382 (562)
T ss_dssp HHHHHHHHHHHHHHTCSCCEECSSCCSHHHHHHHTTTCCCEECCCTTTHHHHHHHHCCCEEESSSCCCTTSCEECSCEEE
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHCCCEEEeccCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEE
Confidence 7788999999999999
Q ss_pred EEECC--eeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH--------------------------
Q psy16434 476 DELGD--TAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK-------------------------- 527 (745)
Q Consensus 476 ~eiGd--tsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~-------------------------- 527 (745)
.++|+ +++++|.|+.. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 383 ~~ig~~~~~~~~i~g~~~-~~~~TIllrG~te~~l~E~kr~i~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~ 461 (562)
T 3p9d_E 383 QEFGTTKDRMLIIEQSKE-TKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEEADKQ 461 (562)
T ss_dssp ECCSSSSCCEEEECCCSC-CSCCEEEEECTTTTTHHHHTHHHHHHHHHHHHHHHSCCEEETTTHHHHHHHHHHHHHHHTT
T ss_pred EEeccCCceEEEEecCCC-CCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCcHHHHHHHHHHHHHhccC
Confidence 99995 89999999987 88999999999999999999999999999999997
Q ss_pred ----------------HHHHHHHhhccchhhHHHHHHHHHhhc-CCccceeeecCCCcceeecccccccccccchhhHhh
Q psy16434 528 ----------------VFVKTLAENTGVKSNEVISKLYSAHNE-GKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALK 590 (745)
Q Consensus 528 ----------------~IPr~LaeNAGld~~~vlsKL~~~h~~-g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~ 590 (745)
.+|++|++|||+|+.+++++|++.|.. +..++|||+.++ .+.||...|||||+.|+..+|+
T Consensus 462 ~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~~G~d~~~g--~~~dm~~~gI~dp~~vk~~al~ 539 (562)
T 3p9d_E 462 RGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGY--GSNDMKELFVVDPFIGKKQQIL 539 (562)
T ss_dssp CTTHHHHHHHHHHHHTHHHHHHHHTTTSCHHHHHHHHHHHHHHTTTSSBCCBTTTT--BCCBTTTTTCEEEHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCceeEecCCC--cccchHhccCEEcHHHHHHHHH
Confidence 679999999999999999999999875 446799999999 9999999999999999999999
Q ss_pred hhhhcchhhcccccceee
Q psy16434 591 YATSAANTILQQTKAKIA 608 (745)
Q Consensus 591 ~A~e~a~mil~IDn~kIl 608 (745)
.|++.+.|++++|++..+
T Consensus 540 ~A~e~a~~iL~iD~ii~~ 557 (562)
T 3p9d_E 540 LATQLCRMILKIDNVIIS 557 (562)
T ss_dssp HHHHHHHHHHTEEEEEEC
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 999999999999998653
|
| >3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-70 Score=619.23 Aligned_cols=373 Identities=26% Similarity=0.384 Sum_probs=348.3
Q ss_pred ccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcCcc
Q psy16434 182 FSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 182 ~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GDGt 261 (745)
.+| .+++.+||.||.+|+++|+|||||+||||||+++.|+++|||||+||||+|+++||+|||++++|++||+++|||
T Consensus 6 ~~~-~~a~~~ni~a~~~la~~vkttlGPkG~~kml~~~~g~~~iTnDG~tIlk~i~v~hp~akll~~~a~~qd~e~GDG- 83 (517)
T 3iyg_Z 6 ARA-QAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDG- 83 (517)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHHHhCCC-
Confidence 455 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+++||++||++|.+++++|+||+.|++||++|++
T Consensus 84 -------------------------------------------TTtvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~A~~ 120 (517)
T 3iyg_Z 84 -------------------------------------------TTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKE 120 (517)
T ss_pred -------------------------------------------ceeHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCC-ChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccc
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYG-NEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNS 420 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~-~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS 420 (745)
.+++.|++++++.. . +++.|.++|+|+++||+.+ +.++|++++++|+..+.+. +..+|+++|+|+|+.||+..||
T Consensus 121 ~a~~~L~~~s~~v~--~-~~~~L~~va~tsl~sKi~~~~~d~la~l~vdaV~~V~~~-~~~~dl~~I~I~k~~Gg~~~ds 196 (517)
T 3iyg_Z 121 KALQFLEQVKVSKE--M-DRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQ-DEPIDLFMVEIMEMKHKSETDT 196 (517)
T ss_pred HHHHHHHhhCcCCC--C-CHHHHHHHHHHHhccccchhHHHHHHHHHHHHhheeccC-CCcCChhHheeeeecCCCcccc
Confidence 99999999987732 1 6788999999999999887 4799999999999998754 3468999999999999999999
Q ss_pred eeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC---------------------------------------
Q psy16434 421 EIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK--------------------------------------- 459 (745)
Q Consensus 421 ~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k--------------------------------------- 459 (745)
++++||+|++++.+ ||++++||||++++++||++|++.+
T Consensus 197 ~lv~G~v~dk~~~~p~m~~~ien~kIll~~~~le~~k~e~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~ 276 (517)
T 3iyg_Z 197 SLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGD 276 (517)
T ss_pred ceEeeEEEeccCCCCCccccccCCeEEEecccccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 99999999999987 5999999999999999987665310
Q ss_pred ----------------------------------------------------CCCCccc-ccccccEEEEEECCeeEEEE
Q psy16434 460 ----------------------------------------------------TPPAASE-LGYADSVAVDELGDTAVVVF 486 (745)
Q Consensus 460 ----------------------------------------------------~~p~a~~-LG~a~~vq~~eiGdtsvti~ 486 (745)
+++++++ ||+|+ +++..+|++++++|
T Consensus 277 ~~~~lvIi~~~~I~d~al~~L~~~gI~~v~~v~~~~leria~~tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~~~~~~~ 355 (517)
T 3iyg_Z 277 SDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAG-VYEYTLGEEKFTFI 355 (517)
T ss_pred cCCceEEEecccCCHHHHHHHHHCCCEEEEecCHHHHHHHHHHhCCEEecchhhCcccccCCcce-EEEEEEcCceEEEE
Confidence 6788888 99999 99999999999999
Q ss_pred EecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH---------------------------------------
Q psy16434 487 KLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK--------------------------------------- 527 (745)
Q Consensus 487 ~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~--------------------------------------- 527 (745)
+|+.. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 356 ~g~~~-~~~~TI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ 434 (517)
T 3iyg_Z 356 EKCNN-PRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFAD 434 (517)
T ss_pred eCCCC-chhheeeecCCcHHHHHHHHHHHHHHHHHHHHHHhcceEecCccHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 99987 88999999999999999999999999999999987
Q ss_pred ---HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhccccc
Q psy16434 528 ---VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTK 604 (745)
Q Consensus 528 ---~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn 604 (745)
.+|++||+|||+|+.+++++|++.|.++..++|||+.++ .+.||...|||||+.|+.++++.|++.+.|+++||+
T Consensus 435 ALe~iP~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g--~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ 512 (517)
T 3iyg_Z 435 ALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLNTG--EPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDE 512 (517)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcEEEeCCCC--cccchhhccCeecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999987777899999999 999999999999999999999999999999999998
Q ss_pred cee
Q psy16434 605 AKI 607 (745)
Q Consensus 605 ~kI 607 (745)
+..
T Consensus 513 ii~ 515 (517)
T 3iyg_Z 513 IMR 515 (517)
T ss_pred Hhh
Confidence 753
|
| >3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-70 Score=627.06 Aligned_cols=387 Identities=26% Similarity=0.427 Sum_probs=353.3
Q ss_pred ceeecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHH
Q psy16434 171 PAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGS 250 (745)
Q Consensus 171 ~~~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s 250 (745)
|..+++++.++.+| .+++.+|+.||..|+++|+|||||+||||||+++.|+++|||||+||||+|+++||+|||++++|
T Consensus 4 ~~~~~~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~~~hP~Akll~e~a 82 (590)
T 3p9d_C 4 PVVFMNASQERTTG-RQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLELS 82 (590)
T ss_dssp --CCSCTTCCBCTT-HHHHHTTHHHHHHHHHHSTTTCSSSCCCCEEECTTTCCBCCCCHHHHHHHSCCCCHHHHTHHHHT
T ss_pred CeEeecCCcchhhH-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECCHHHHHHHhhCCCHHHHHHHHHH
Confidence 67788999999999 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHh-hhCCCCH
Q psy16434 251 QMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNL-LRMGLTP 329 (745)
Q Consensus 251 ~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~l-i~~gihP 329 (745)
++||+++||| |||+++||++||++|.++ +++|+||
T Consensus 83 ~~qd~e~GDG--------------------------------------------TTtvvVLA~eLL~~a~~l~l~~GihP 118 (590)
T 3p9d_C 83 RTQDEEVGDG--------------------------------------------TTTVIILAGEILAQCAPYLIEKNIHP 118 (590)
T ss_dssp TTHHHHCSSC--------------------------------------------HHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HhhhhhhCCC--------------------------------------------ccchHHHHHHHHhhhHHhhhhcCCCH
Confidence 9999999999 999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCC-ChhhHHHHHHHHHHhhcCCCCC--------
Q psy16434 330 SEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYG-NEDFLTDLITKACVSILPDGSS-------- 400 (745)
Q Consensus 330 ~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~-~~~~ls~LivdAv~~v~~~~~~-------- 400 (745)
+.|++||++|++.+++.|++++++ ++..+++.|.++|+|+++||+.+ ++++|++|+++|+.+++++...
T Consensus 119 ~~I~~G~~~A~~~a~~~L~~~s~~--v~~~~~e~L~~vA~tslsSK~~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~~ 196 (590)
T 3p9d_C 119 VIIIQALKKALTDALEVIKQVSKP--VDVENDAAMKKLIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNF 196 (590)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCT--TTTCCTHHHHHHHTTTSTTSTTGGGHHHHHHHHHHHHTTSTTCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--cccCCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 999999999999999999999876 34456788999999999999987 4799999999999999875211
Q ss_pred CCCcc-ceEEEEccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC------------------
Q psy16434 401 SFNVD-NVRITKILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK------------------ 459 (745)
Q Consensus 401 ~~dl~-~I~I~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k------------------ 459 (745)
.+|++ +|+|+++.|+++.||++++||+|++++.+ ||++++||||++++++||++|++.+
T Consensus 197 ~vDl~~~I~I~ki~Ggs~~ds~lv~Gmvfdk~~~~~~m~~~~en~kIll~d~~Le~~K~e~~~~v~Is~~~~l~~il~~E 276 (590)
T 3p9d_C 197 EIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIE 276 (590)
T ss_dssp -CCCSSSSCEEEESSCCGGGCBCCSSEEECCCCSCTTSCSCEESCCEECCCCCCSCCCCTTTEECCBCSTTHHHHHHHHH
T ss_pred ccchhhceEEEEecCCCcccceeeeEEEEecccCCCCCcceeeeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHH
Confidence 34554 79999999999999999999999999876 5999999999999999999885421
Q ss_pred ----------------------------------------------------------------CCCCcccccc-cccEE
Q psy16434 460 ----------------------------------------------------------------TPPAASELGY-ADSVA 474 (745)
Q Consensus 460 ----------------------------------------------------------------~~p~a~~LG~-a~~vq 474 (745)
+++++++||+ |++++
T Consensus 277 ~~~l~~~vekI~~~g~~vII~e~~I~d~Al~~L~k~~I~av~~~~k~~le~ia~~TGa~iis~l~~~~~~~LG~~a~~v~ 356 (590)
T 3p9d_C 277 EEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFK 356 (590)
T ss_dssp HHHHHHHHHHHHTTCCSEECCSSCCCTHHHHHHHHTTCCCCCCCCHHHHHHHHHHHTCCCCSCSTTCCTTSCBCCCSEEE
T ss_pred HHHHHHHHHHHHhcCCcEEEecCCcCHHHHHHHHhccceeeccCCHHHHHHHHHHhCCceeecccCCCHHHhCCcCCEEE
Confidence 7788899999 99999
Q ss_pred EEEECCeeEEEEEecccccce--------------------------------------------------------eEE
Q psy16434 475 VDELGDTAVVVFKLEAAESRI--------------------------------------------------------ATL 498 (745)
Q Consensus 475 ~~eiGdtsvti~~g~~l~~~a--------------------------------------------------------~TI 498 (745)
+..+|++++++|.|+.. +.+ +||
T Consensus 357 ~~~ig~d~~~~i~g~~~-~~~~~~~~~~~~~~~~~k~~~~~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~~~l~ggv~tI 435 (590)
T 3p9d_C 357 VEMIGDEYFSFLDNCKE-PGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHHHHHGSGKACTI 435 (590)
T ss_dssp CCEETTEECEEECC----------------------------------------------------------CCCSCCCE
T ss_pred EEEEcCcEEEEEeCCCC-ccccccccccccccccchhhhhcchhhHHHHHHHHHHHHHHhccCCHHHHHHHhhcCCeeEE
Confidence 99999999999998865 444 999
Q ss_pred EEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------------HHHHHHHhh
Q psy16434 499 VIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------------VFVKTLAEN 536 (745)
Q Consensus 499 IlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------------~IPr~LaeN 536 (745)
++||+|+.+++|.+|+++||+++++++++ .+|++||+|
T Consensus 436 ~lrg~te~~l~E~kr~i~DAl~a~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~N 515 (590)
T 3p9d_C 436 MLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQN 515 (590)
T ss_dssp EEECSSTTTHHHHHHHHHHHHHHHHHHHHCCCEECTTTHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHTTHHHHHHHHT
T ss_pred EEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeCccHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 678999999
Q ss_pred ccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhccccccee
Q psy16434 537 TGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 537 AGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kI 607 (745)
||+|+.+++++|++.|..+..++|||+.++ .+.||...|||||+.|+..+|+.|++.+.|++++|++..
T Consensus 516 aG~d~~~vv~~l~~~h~~~~~~~G~d~~~g--~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~ 584 (590)
T 3p9d_C 516 AGGDPIRLLSQLRAKHAQGNFTTGIDGDKG--KIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVS 584 (590)
T ss_dssp TCSCHHHHHHHHHHHHTTSCTTCBCCTTSS--SCBCTTTTTCCEEHHHHHHHHHHHHHHHHHTTSEEEEEC
T ss_pred cCCCHHHHHHHHHHHHhcCCCCEeEeCCCC--eEeehHHcCCeEcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988777899999999 999999999999999999999999999999999998764
|
| >3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-70 Score=624.34 Aligned_cols=385 Identities=29% Similarity=0.447 Sum_probs=356.3
Q ss_pred eeecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeec-CCCCeEEecCHHHHHhhccccChhhHHHHHHH
Q psy16434 172 AAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVIN-HIDKLFVTNDAATIIRELEIEHPAAKLIILGS 250 (745)
Q Consensus 172 ~~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~-~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s 250 (745)
..+|+++.+..+| ++++.+|+.||.+|+++|+|||||+||||||++ +.|+++|||||+||||+|+++||+|||++++|
T Consensus 3 ~~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~G~~~iTnDG~tIlk~i~~~hP~Akll~e~a 81 (527)
T 3p9d_B 3 VQIFGDQVTEERA-ENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNIS 81 (527)
T ss_dssp CCSSCSCEEEEES-HHHHHHHHHHHHHHHHHHHSCSSSSCCEEEEECTTTCCEECCCCHHHHHHTCCCCCHHHHHHHHHH
T ss_pred eehhcCcchhhhh-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEecCCCCeEEeCCHHHHHHHhccCCHHHHHHHHHH
Confidence 4568899999999 699999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred hhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhC-CCCH
Q psy16434 251 QMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRM-GLTP 329 (745)
Q Consensus 251 ~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~-gihP 329 (745)
++||+++||| |||+++||++||+++.+++++ |+||
T Consensus 82 ~~qd~~~GDG--------------------------------------------TTtavVLA~~Ll~ea~~lv~~~GihP 117 (527)
T 3p9d_B 82 KVQDDEVGDG--------------------------------------------TTSVTVLSAELLREAEKLIDQSKIHP 117 (527)
T ss_dssp HHHHHHTCSC--------------------------------------------TTTTTHHHHHHHHHHHHHTC---CCH
T ss_pred HHhHhhhCCc--------------------------------------------HhHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 9999999999 999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccc-CcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccce
Q psy16434 330 SEIVNGYKLALAKTLEILPTLTCFEVKD-VRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNV 407 (745)
Q Consensus 330 ~~I~~g~~~a~~~~l~~L~~~s~~~~~~-~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I 407 (745)
+.|++||++|++.+++.|++++++...+ ..+++.|.++|+||++||++++ +++|++|+++|+.+++++ + |++.|
T Consensus 118 ~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~~l~~vA~tSl~sK~~~~~~~~i~~li~dAv~~V~~~--~--~~~~I 193 (527)
T 3p9d_B 118 QTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRLKGS--T--NLEHI 193 (527)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCBCCCCCHHHHHHHHHHHHHHHHTTSGGGGGHHHHHHHHHHHHHTTCTT--C--CTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccCCCcchhhHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHhccc--C--CcceE
Confidence 9999999999999999999998773211 0126889999999999999985 689999999999999865 2 67789
Q ss_pred EEEEccCCCcccceeEeeEEEeecccCC-ceeeeCceEEEeccCCCcccccc-C--------------------------
Q psy16434 408 RITKILGSGLFNSEIVQGMVFKRSVEGD-ITKQTKAKIAVYTCPVDIATTET-K-------------------------- 459 (745)
Q Consensus 408 ~I~ki~Ggs~~dS~lv~G~~l~~~~~~~-~~~i~nakIlil~~~Le~~k~e~-k-------------------------- 459 (745)
+|+++.|+++.||++++||+|++++.++ |++++||||++++++||+++++. +
T Consensus 194 ~V~k~~gg~~~ds~lv~G~~~dk~~~~~~p~~~~n~kIlll~~~le~~k~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~l 273 (527)
T 3p9d_B 194 QIIKILGGKLSDSFLDEGFILAKKFGNNQPKRIENAKILIANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKI 273 (527)
T ss_dssp CCCBCCCSSSSCCCEESSCCCSCCCSSSCCSCCSSCEEEEECSCSSCCCCSSCCCBCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCccccEEEEeEEEecccCCCCCeeeecceEEEeccccccccccccCceEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987 89999999999999999987751 1
Q ss_pred --------------------------------------------------------CCCCcccccccccEEEEEECCeeE
Q psy16434 460 --------------------------------------------------------TPPAASELGYADSVAVDELGDTAV 483 (745)
Q Consensus 460 --------------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsv 483 (745)
++++++.||+|+.+++.++|++++
T Consensus 274 ~~I~~~g~~vvi~~~~I~~~al~~L~~~~i~av~~~~~~dle~ia~~tGa~iv~~~~~~~~~~LG~a~~v~~~~ig~~~~ 353 (527)
T 3p9d_B 274 AKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPF 353 (527)
T ss_dssp HHHTTTCCBEEESSCCCTTTHHHHHHHTCBCCCCCCHHHHHHHHHHHTCCCCCSTTSCCTTSCEECSBCCBCCCSSSCCB
T ss_pred HHHHhcCCCEEEECCCCCHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEecchhhCCHHHCCCCcEEEEEEecceEE
Confidence 678889999999999999999999
Q ss_pred EEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------
Q psy16434 484 VVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------ 527 (745)
Q Consensus 484 ti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------ 527 (745)
++|.|+.. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 354 ~~~~g~~~-~~~~tI~lrg~te~~l~E~kr~i~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~ 432 (527)
T 3p9d_B 354 LKFSGCKA-GEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEA 432 (527)
T ss_dssp CCBCSSCC-SCCEECBCCTTCTTHHHHHHTHHHHHHHHHHHHHHCCCEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHH
T ss_pred EEEECCCC-CCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 99999986 88999999999999999999999999999999987
Q ss_pred ------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcc
Q psy16434 528 ------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601 (745)
Q Consensus 528 ------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~ 601 (745)
.+|++|++|||+|+.+++++|++.|.++..++|||+.++ .+.||...|||||+.|+..+++.|++.+.|+++
T Consensus 433 ~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g--~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~ 510 (527)
T 3p9d_B 433 FARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTSGLDLNNG--TIADMRQLGIVESYKLKRAVVSSASEAAEVLLR 510 (527)
T ss_dssp HHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHTCSCCCCCSSST--TCCCHHHHTCEEETTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCceeEECCCC--CCcchHhccCEEcHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999987777899999999 999999999999999999999999999999999
Q ss_pred cccceee
Q psy16434 602 QTKAKIA 608 (745)
Q Consensus 602 IDn~kIl 608 (745)
+|++...
T Consensus 511 id~ii~~ 517 (527)
T 3p9d_B 511 VDNIIRA 517 (527)
T ss_dssp CCEEEEE
T ss_pred HHHHHhc
Confidence 9988664
|
| >3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-70 Score=625.03 Aligned_cols=388 Identities=21% Similarity=0.354 Sum_probs=356.8
Q ss_pred eecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhh
Q psy16434 173 AIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQM 252 (745)
Q Consensus 173 ~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~ 252 (745)
.++.++++..+| .+++.+||.||.+|+++|+|||||+||||||+++.|+++|||||+||||+|+++||+|||++++|++
T Consensus 4 ~~~~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~ 82 (546)
T 3p9d_F 4 QLLNPKAESLRR-DAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAA 82 (546)
T ss_dssp CSSCTTEEEEEH-HHHHHHHHHHHTHHHHHHTTTSSTTCCEEEEECTTSCEEEECCHHHHHHTSCCCCHHHHHHHHHHHH
T ss_pred cccCCCcchhhH-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHH
Confidence 456778888888 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHH
Q psy16434 253 QEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEI 332 (745)
Q Consensus 253 qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I 332 (745)
||+++||| |||+|+||++||++|.+++++|+||+.|
T Consensus 83 qd~e~GDG--------------------------------------------TTtvvVLA~eLL~~a~~li~~GihP~~I 118 (546)
T 3p9d_F 83 QDEITGDG--------------------------------------------TTTVVCLVGELLRQAHRFIQEGVHPRII 118 (546)
T ss_dssp HHHHCSSC--------------------------------------------HHHHHHHHHHHHHHHHHHTTTTBCHHHH
T ss_pred HHHHhCCC--------------------------------------------cccHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCC-ChhhHHHHHHHHHHhhcCCCCCCCCccceEEEE
Q psy16434 333 VNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYG-NEDFLTDLITKACVSILPDGSSSFNVDNVRITK 411 (745)
Q Consensus 333 ~~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~-~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~k 411 (745)
++||++|++.+++.|++++++...+..+++.|.++|+|+++||+.+ +.++|++++++|+..+.+..+..+|+++|+|++
T Consensus 119 ~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~L~~vA~tsl~sKi~~~~~d~la~l~vdaV~~V~~~~~~~~dl~~I~i~k 198 (546)
T 3p9d_F 119 TDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQ 198 (546)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCSSSSTTCHHHHHHHHHHTCSTTHHHHCSSHHHHHHHHHHHTHHHHHTTCCGGGEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhheEeecCCCCcccchheEEEE
Confidence 9999999999999999999874333357889999999999999886 479999999999998864323468999999999
Q ss_pred ccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCcccccc-------------------------------
Q psy16434 412 ILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTET------------------------------- 458 (745)
Q Consensus 412 i~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~------------------------------- 458 (745)
+.|++..||++++||+|++++.+ ||++++||||++++++||+.+++.
T Consensus 199 i~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~en~kIll~~~~Le~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~ 278 (546)
T 3p9d_F 199 MQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKII 278 (546)
T ss_dssp CCCSCTTTCCCCSSCEESCCCCSSSSCSSBCSCCCCEECCCSSSCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCccccEEEeeEEEecccccccCcceecCceEEEecCcccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 599999999999999998776321
Q ss_pred --------------------C-----------------------------------------CCCCcccccccccEEEEE
Q psy16434 459 --------------------K-----------------------------------------TPPAASELGYADSVAVDE 477 (745)
Q Consensus 459 --------------------k-----------------------------------------~~p~a~~LG~a~~vq~~e 477 (745)
+ ++++++.||+|+++++..
T Consensus 279 ~~~~~v~~~~~g~~~vIi~~k~I~~~Al~~L~~~gI~~vr~v~~~~leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ 358 (546)
T 3p9d_F 279 DLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQET 358 (546)
T ss_dssp HCC-----------CEEEESSCCCHHHHHHHTTTTCEEECCCCHHHHHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCC
T ss_pred HHHHHHhhhccCCceEEEecCcCcHHHHHHHHHCCCeeEecCCHHHHHHHHHHhCCEEecchhhCCHhHCCcccEEEEEE
Confidence 0 678889999999999999
Q ss_pred ECCeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------
Q psy16434 478 LGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------ 527 (745)
Q Consensus 478 iGdtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------ 527 (745)
+|++++++|+|+.. +.++||++||+|+.+++|.+|+++||+++++++++
T Consensus 359 ig~~~~~~i~g~~~-~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~~~~ 437 (546)
T 3p9d_F 359 IGEEKFTYVTENTD-PKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAK 437 (546)
T ss_dssp CSSCCCEECSSCSC-CSCEEEECCCSCHHHHHHHHHHHHHHHHHHHHHTTSCCEEETTTHHHHHHHHHHHHHHTTTTTTT
T ss_pred ecCceEEEEecCCC-CceEEEEECCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhhhhhhcCc
Confidence 99999999999987 88999999999999999999999999999998876
Q ss_pred ---------------HHHHHHHhhccchhhHHHHHHHHHhhc-----CCccceeeecCCCcceeecccccccccccchhh
Q psy16434 528 ---------------VFVKTLAENTGVKSNEVISKLYSAHNE-----GKKTYGFDINGENSSVIDAAEAGILDLYLTKMW 587 (745)
Q Consensus 528 ---------------~IPr~LaeNAGld~~~vlsKL~~~h~~-----g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~ 587 (745)
.+|++|++|||+|+.+++++|++.|.. +..++|||+.++ ++.||...|||||+.|+..
T Consensus 438 g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~G~d~~~g--~~~d~~~~gI~dp~~vk~~ 515 (546)
T 3p9d_F 438 GKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQDSDETRYVGVDLNIG--DSCDPTIEGIWDSYRVLRN 515 (546)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHHTTSTTSSCCCCBTTTT--BCCCSGGGTCEEEHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhhcccCCceeeEeCCCC--eecchHhccCEecHHHHHH
Confidence 468999999999999999999998873 445789999999 9999999999999999999
Q ss_pred Hhhhhhhcchhhcccccceee
Q psy16434 588 ALKYATSAANTILQQTKAKIA 608 (745)
Q Consensus 588 vL~~A~e~a~mil~IDn~kIl 608 (745)
+|+.|++.+.|+++||++..+
T Consensus 516 al~~A~~~a~~iL~iD~ii~~ 536 (546)
T 3p9d_F 516 AITGATGIASNLLLCDELLRA 536 (546)
T ss_dssp HHHHHHHHHHHHHTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999998764
|
| >3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-61 Score=545.38 Aligned_cols=345 Identities=28% Similarity=0.444 Sum_probs=273.2
Q ss_pred eeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhc
Q psy16434 215 IVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGS 294 (745)
Q Consensus 215 mIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~ 294 (745)
||+++.|+++|||||+||||+|+++||+|||++++|++||+++|||
T Consensus 1 mlv~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDG---------------------------------- 46 (500)
T 3aq1_B 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDG---------------------------------- 46 (500)
T ss_dssp ------------------------------------------CCHH----------------------------------
T ss_pred CccCCCCCeEEECcHHHHHHhCcCCCHHHHHHHHHHHhhhhhhCCC----------------------------------
Confidence 7899999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhcccccccccccCcccccccceeeecccc
Q psy16434 295 QMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMS 374 (745)
Q Consensus 295 ~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~s 374 (745)
|||+++||++||+++.+++++|+||+.|++||++|++.+++.|++++++. +..+++.|.++|+|+++|
T Consensus 47 ----------TTtvvvLa~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v--~~~d~~~l~~va~tsl~s 114 (500)
T 3aq1_B 47 ----------TTTAAVLSGELLSKAEELIMKGVHSTIISEGYRHAAEKCREILETITIAI--SPDDEAALIKIAGTAITG 114 (500)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEEC--CTTCHHHHHHHHHTTCCS
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCcHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999998873 334688999999999999
Q ss_pred ccCC-ChhhHHHHHHHHHHhhcCCCCC--CCC-ccceEEEEccCCCcccceeEeeEEEeecccC--CceeeeCceEEEec
Q psy16434 375 KQYG-NEDFLTDLITKACVSILPDGSS--SFN-VDNVRITKILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYT 448 (745)
Q Consensus 375 K~~~-~~~~ls~LivdAv~~v~~~~~~--~~d-l~~I~I~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~ 448 (745)
|+.+ ++++|++|+++|+.+++++.++ .+| +++|+|+++.|++++||++++||+|++++.| +|++++||||++++
T Consensus 115 Ki~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~i~n~kIll~~ 194 (500)
T 3aq1_B 115 KGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHPNMPEKVENAKILLLS 194 (500)
T ss_dssp SSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEEESSCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEES
T ss_pred ccccccHHHHHHHHHHHHHHhcccccCCccccccccEEEEEecCCCccceEEEeeeEEeecCCCCCCcccccCCEEEEEe
Confidence 9998 5899999999999999865222 467 7889999999999999999999999999976 59999999999999
Q ss_pred cCCCccccccC---------------------------------------------------------------------
Q psy16434 449 CPVDIATTETK--------------------------------------------------------------------- 459 (745)
Q Consensus 449 ~~Le~~k~e~k--------------------------------------------------------------------- 459 (745)
++||+.+++.+
T Consensus 195 ~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ 274 (500)
T 3aq1_B 195 CPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKR 274 (500)
T ss_dssp SCBCC-------------------------CHHHHHHHHHHTTCCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHH
T ss_pred CCccccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEECCCcCHHHHHHHHHCCEEEEEeCCHHHHHH
Confidence 99998876531
Q ss_pred -------------CCCCcccccccccEEEEEECCeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHH
Q psy16434 460 -------------TPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGIT 526 (745)
Q Consensus 460 -------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~ 526 (745)
++++++.||+|+++++.++|++++++|.|+.. ++++||++||+|+.+++|.+|+++||++++++++
T Consensus 275 ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~TI~lrG~t~~~l~E~er~l~Dal~~~r~~~ 353 (500)
T 3aq1_B 275 LSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTYVTGCQN-SKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVI 353 (500)
T ss_dssp HHHHHCCCCBSCTTCCCSTTCEEEEEEEEEECSSSEEEEEEEETT-CCCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEecccccCCHhHCCCceEEEEEEecCeEEEEEECCCC-CceEEEEecCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999987 8899999999999999999999999999999998
Q ss_pred H------------------------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeec
Q psy16434 527 K------------------------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDIN 564 (745)
Q Consensus 527 ~------------------------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~ 564 (745)
+ .+|++|++|||+|+.+++++|++.|.++..++|+|+.
T Consensus 354 ~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~ 433 (500)
T 3aq1_B 354 EDGKVVVGGGSSEVELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEKGNKNAGLNVY 433 (500)
T ss_dssp HHSEEEETTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTCTTEEECTT
T ss_pred HCCCCCCCCcHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCeeEeCC
Confidence 7 6799999999999999999999999877778999999
Q ss_pred CCCcceeecccccccccccchhhHhhhhhhcchhhcccccceee
Q psy16434 565 GENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKIA 608 (745)
Q Consensus 565 ~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kIl 608 (745)
++ .+.||...|||||+.|+..+++.|++.+.|++++|++...
T Consensus 434 ~g--~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~ 475 (500)
T 3aq1_B 434 TG--EVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVVAS 475 (500)
T ss_dssp TC--CEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHCC------
T ss_pred CC--CccchHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99 9999999999999999999999999999999999997654
|
| >1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-60 Score=539.93 Aligned_cols=353 Identities=21% Similarity=0.300 Sum_probs=315.8
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccCh----hhHHHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHP----AAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP----~akll~~~s~~qd~~~GDGt 261 (745)
++++.+|++||..|+++|+|||||+||||||++++|+++|||||+||||+|+++|| +|||++++|++||+++|||
T Consensus 10 ~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~e~GDG- 88 (545)
T 1iok_A 10 SDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDG- 88 (545)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHGGGGCSTH-
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECCCCCeEEeCCHHHHHHHhccCChhhHHHHHHHHHHHHhhccccCCC-
Confidence 68999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+++||++||+++.+++++|+||+.|++||++|++
T Consensus 89 -------------------------------------------TTtvvVLA~~Ll~ea~~li~~GihP~~I~~G~~~A~~ 125 (545)
T 1iok_A 89 -------------------------------------------TTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATA 125 (545)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -------------------------------------------cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccc-
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNS- 420 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS- 420 (745)
.+++.|++++.+. .+++.|.++|++++++ +++|++|+++|+.+++++ +. |+|+ .|+++++|
T Consensus 126 ~a~~~L~~~s~~v----~~~e~l~~va~iS~~~-----~~~i~~li~dAv~~V~~~--g~-----I~Ve--~G~~~~ds~ 187 (545)
T 1iok_A 126 KVVEAIKSAARPV----NDSSEVAQVGTISANG-----ESFIGQQIAEAMQRVGNE--GV-----ITVE--ENKGMETEV 187 (545)
T ss_dssp HHHHHHHTTCBCC----CSTTTTTHHHHHTTTT-----CHHHHHHHHHHHHHHCTT--SC-----CCCE--ECSSSCCEE
T ss_pred HHHHHHHHhcccC----CCHHHHHHHHHhhcCC-----chhHHHHHHHHHHHhccC--Ce-----EEEE--eCCccccce
Confidence 9999999998773 3578899999988763 689999999999999865 33 5554 79999999
Q ss_pred eeEeeEEEeecccC---------CceeeeCceEEEeccCCCccccccC--------------------------------
Q psy16434 421 EIVQGMVFKRSVEG---------DITKQTKAKIAVYTCPVDIATTETK-------------------------------- 459 (745)
Q Consensus 421 ~lv~G~~l~~~~~~---------~~~~i~nakIlil~~~Le~~k~e~k-------------------------------- 459 (745)
++++||+|++++.+ ++++++|||||+++++++..+.-..
T Consensus 188 ~lveG~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~I~~~~~l~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~i 267 (545)
T 1iok_A 188 EVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKL 267 (545)
T ss_dssp EEECCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBCCCCC-----------CCCCEEEESCBC------------
T ss_pred EEEecEEEecCccccccccCcccCceeecCCeEEEEcCCcCCHHHHHHHHHHHHhcCCCEEEECCCcCHHHHHHHHHccc
Confidence 99999999999876 4667999999999998775433100
Q ss_pred ------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEeccc------
Q psy16434 460 ------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAA------ 491 (745)
Q Consensus 460 ------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l------ 491 (745)
+++++++||+|+++++ +++++++|.|+..
T Consensus 268 rg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ 344 (545)
T 1iok_A 268 RGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSI---NKDNTTIVDGAGEKAEIEA 344 (545)
T ss_dssp -----CEEEECSCCTTHHHHHHHHHHHHHTC---------------CTTSEEEEEEEE---CSSCEEEESCCCCHHHHHH
T ss_pred cccceeEEEecchhhhccHHHHHHHHHhcCCeeecccccCCcccCCHHHcCcCcEEEE---ecCEEEEEeCCCCHHHHHH
Confidence 4456778999999965 5699999998763
Q ss_pred ----------------------------ccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------
Q psy16434 492 ----------------------------ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------- 527 (745)
Q Consensus 492 ----------------------------~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------- 527 (745)
+++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 345 r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av~~giVpGGGa~e~~~s~ 424 (545)
T 1iok_A 345 RVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAK 424 (545)
T ss_dssp HHHHHHHHHTTCCCSSHHHHHHHHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHCEEETTTHHHHHHGG
T ss_pred HHHHHHHHHhccCchhhHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHH
Confidence 247899999999999999999999999999999987
Q ss_pred ------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccccccc
Q psy16434 528 ------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYL 583 (745)
Q Consensus 528 ------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~l 583 (745)
.+|++|++|||+|+.+++++|++.| ..++|||+.++ ++.||...|||||+.
T Consensus 425 ~L~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~~---~~~~G~d~~~g--~~~dm~~~gI~dp~~ 499 (545)
T 1iok_A 425 VLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESS---DKAFGFNAQTE--EYGDMFKFGVIDPAK 499 (545)
T ss_dssp GGGSCCCSSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHSCC---STTEEEETTTT--EEEEHHHHTCEEEHH
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCeeEeCCCC--cccchHhcCcEEccH
Confidence 6789999999999999999999765 35789999999 999999999999999
Q ss_pred chhhHhhhhhhcchhhcccccceee
Q psy16434 584 TKMWALKYATSAANTILQQTKAKIA 608 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~kIl 608 (745)
|+..+++.|++.+.|++++|++...
T Consensus 500 vk~~al~~A~~~A~~iL~id~iI~~ 524 (545)
T 1iok_A 500 VVRTALEDAASVAGLLITTEAMIAE 524 (545)
T ss_dssp HHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhcc
Confidence 9999999999999999999986553
|
| >1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-59 Score=538.58 Aligned_cols=352 Identities=19% Similarity=0.259 Sum_probs=318.1
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccCh----hhHHHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHP----AAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP----~akll~~~s~~qd~~~GDGt 261 (745)
++++.+|++||..|+++|+|||||+||||||++++|+++|||||+||||+|+++|| +|||++++|++||+++|||
T Consensus 9 ~~ar~~~~~~~~~la~~vkttLGPkG~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~e~GDG- 87 (543)
T 1we3_A 9 EAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDG- 87 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHcccCChHHhHHHHHHHHHHHhhheecCCC-
Confidence 68999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+++||++||+++.+++++|+||+.|++||++|++
T Consensus 88 -------------------------------------------TTtvvVLA~~LL~ea~~li~~GihP~~I~~G~~~A~~ 124 (543)
T 1we3_A 88 -------------------------------------------TTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVE 124 (543)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -------------------------------------------cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccc-
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNS- 420 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS- 420 (745)
.+++.|++++.+. .+++.|.++|+++++ +++|++|+++|+.+++++ + .|+|+ .|+++++|
T Consensus 125 ~a~~~L~~~s~~v----~~~~~l~~vA~iS~~------~~~i~~li~dAv~~V~~~--g-----~I~Ve--~G~~~~ds~ 185 (543)
T 1we3_A 125 AAVEKIKALAIPV----EDRKAIEEVATISAN------DPEVGKLIADAMEKVGKE--G-----IITVE--ESKSLETEL 185 (543)
T ss_dssp HHHHHHHHTCBCC----CSHHHHHHHHHHHHT------CHHHHHHHHHHHHTTCTT--S-----EEEEE--ECSSSSCEE
T ss_pred HHHHHHHHhcccC----CCHHHHHHhhhhhcC------CHHHHHHHHHHHHHhCcC--C-----cEEEe--cCCccccce
Confidence 9999999998773 367889999998886 488999999999999754 2 26676 79999998
Q ss_pred eeEeeEEEeecccC---------CceeeeCceEEEeccCCCcccccc---------C-----------------------
Q psy16434 421 EIVQGMVFKRSVEG---------DITKQTKAKIAVYTCPVDIATTET---------K----------------------- 459 (745)
Q Consensus 421 ~lv~G~~l~~~~~~---------~~~~i~nakIlil~~~Le~~k~e~---------k----------------------- 459 (745)
++++||+|++++.+ ++++++||+||+++++++..+.-. +
T Consensus 186 ~lv~G~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~Is~~~~l~~~le~i~~~g~~lvii~~~I~~~Al~~L~~n~i 265 (543)
T 1we3_A 186 KFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKL 265 (543)
T ss_dssp EEECSEEESCCBSSGGGCSBTTTTBCCEEEEEEEEESSCBCCHHHHHHHHHHHHTTTCCEEEEESCBCHHHHHHHHHHHH
T ss_pred EEEcCEEEecCccccccccCcccCceeecCceEEEECCCcCCHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHhcc
Confidence 99999999999876 356799999999999876433200 0
Q ss_pred ------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEeccc------
Q psy16434 460 ------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAA------ 491 (745)
Q Consensus 460 ------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l------ 491 (745)
+++++++||+|+++++ +++++++|.|+..
T Consensus 266 rg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ 342 (543)
T 1we3_A 266 RGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRI---TKDETTIVGGKGKKEDIEA 342 (543)
T ss_dssp HTSCCEEEEECSSSHHHHHHHHHHHHHHHCCCCBCTTTTCCGGGCCGGGCEEEEEEEE---CSSCEEEEEECCCHHHHHH
T ss_pred ccceeEEEEeccchhhhhHHHHHHHHHHhCCceeeccccCCcccCCHHHCCCceEEEE---EcCEEEEEcCCCCHHHHHH
Confidence 3456778999999965 5699999998763
Q ss_pred ----------------------------ccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------
Q psy16434 492 ----------------------------ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------- 527 (745)
Q Consensus 492 ----------------------------~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------- 527 (745)
+++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 343 r~~~i~~~~~~~~s~~~~e~l~erlakl~~~~~tI~lrG~te~~l~E~~r~i~DAl~~~r~av~~giVpGGGa~e~~~s~ 422 (543)
T 1we3_A 343 RINGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAIS 422 (543)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHCEEETTTHHHHHHHH
T ss_pred HHHHHHHHhhccCchhHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCCccHHHHHHHH
Confidence 237899999999999999999999999999999987
Q ss_pred -------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccc
Q psy16434 528 -------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLY 582 (745)
Q Consensus 528 -------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~ 582 (745)
.+|++|++|||+|+.+++++|++.|. ..++|||+.++ ++.||...|||||+
T Consensus 423 ~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~--~~~~G~d~~~g--~~~dm~~~gI~dp~ 498 (543)
T 1we3_A 423 AVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETK--NPRYGFNAATG--EFVDMVEAGIVDPA 498 (543)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHCCS--CTTEEEETTTT--EEEETTTTTCEEEH
T ss_pred HHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhcC--CCCEEEeCCCC--eecccccCCcCccH
Confidence 67899999999999999999998773 45789999999 99999999999999
Q ss_pred cchhhHhhhhhhcchhhccccccee
Q psy16434 583 LTKMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 583 lVkG~vL~~A~e~a~mil~IDn~kI 607 (745)
.|+..+++.|++.+.|++++|++..
T Consensus 499 ~vk~~al~~A~e~a~~iL~id~iI~ 523 (543)
T 1we3_A 499 KVTRSALQNAASIGALILTTEAVVA 523 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998665
|
| >1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-59 Score=534.80 Aligned_cols=351 Identities=19% Similarity=0.299 Sum_probs=318.0
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccCh----hhHHHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHP----AAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP----~akll~~~s~~qd~~~GDGt 261 (745)
++++.+|++||..|+++|+|||||+||||||++++|+++|||||+||+|+|+++|| +|||++++|++||+++|||
T Consensus 9 ~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~e~GDG- 87 (547)
T 1kp8_A 9 NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDG- 87 (547)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHHhhccccCCC-
Confidence 68999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+++||++||+++.+++++|+||+.|++||++|++
T Consensus 88 -------------------------------------------TTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~ 124 (547)
T 1kp8_A 88 -------------------------------------------TTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVT 124 (547)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -------------------------------------------cchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccc-
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNS- 420 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS- 420 (745)
.+++.|++++++. .+++.|.++|++++++ +++|++|+++|+.+++++ + .|+|+ .|+++++|
T Consensus 125 ~a~~~L~~~s~~v----~~~e~l~~vA~iS~~~-----~~~i~~liadAv~~V~~d--g-----~I~Ve--~G~~~~ds~ 186 (547)
T 1kp8_A 125 VAVEELKALSVPC----SDSKAIAQVGTISANS-----DETVGKLIAEAMDKVGKE--G-----VITVE--DGTGLQDEL 186 (547)
T ss_dssp HHHHHHHHHCBCC----CSHHHHHHHHHHHTTS-----CHHHHHHHHHHHHHHCTT--S-----EEEEE--CCSSSSCEE
T ss_pred HHHHHHHHhCcCC----CCHHHHHHHHHHhccc-----hhHHHHHHHHHHHHhCcC--C-----cEEEE--eCCcccccc
Confidence 9999999998773 3678899999988763 689999999999999864 2 26776 89999999
Q ss_pred eeEeeEEEeecccC---------CceeeeCceEEEeccCCCccccccC--------------------------------
Q psy16434 421 EIVQGMVFKRSVEG---------DITKQTKAKIAVYTCPVDIATTETK-------------------------------- 459 (745)
Q Consensus 421 ~lv~G~~l~~~~~~---------~~~~i~nakIlil~~~Le~~k~e~k-------------------------------- 459 (745)
++++||+|+++|.+ ++++++||+||+++++++..+.-..
T Consensus 187 ~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~Is~~~~l~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~i 266 (547)
T 1kp8_A 187 DVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTM 266 (547)
T ss_dssp EEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESEECCGGGTHHHHHHHHGGGCCEEEEESEECHHHHHHHHHHGG
T ss_pred EEEecEEEecCccccccccCcccCceEecCceEEEEcCcCCCHHHHHHHHHHHHhcCCCEEEECCCcCHHHHHHHHhccc
Confidence 99999999999876 3667999999999998775432100
Q ss_pred ------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEeccc------
Q psy16434 460 ------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAA------ 491 (745)
Q Consensus 460 ------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l------ 491 (745)
+++++++||+|+++++ +++++++|.|+..
T Consensus 267 rg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ 343 (547)
T 1kp8_A 267 RGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVI---NKDTTTIIDGVGEEAAIQG 343 (547)
T ss_dssp GTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEEEEEEEE---CSSCEEEEEECCCHHHHHH
T ss_pred ccceeEEEEeccccccccHHHHHHHHHHhCCeEecccccCCcccCCHHHCCceeEEEE---ccceEEEEcCCCCHHHHHH
Confidence 5667789999999965 5699999999863
Q ss_pred ----------------------------ccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------
Q psy16434 492 ----------------------------ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------- 527 (745)
Q Consensus 492 ----------------------------~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------- 527 (745)
+++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 344 r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl~~~r~av~~giVpGGGa~e~~~s~ 423 (547)
T 1kp8_A 344 RVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVAS 423 (547)
T ss_dssp HHHHHHHHHHSCCSHHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHCEEETTTHHHHHHHH
T ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHHHHHHHhccCCEEeCCcHHHHHHHH
Confidence 137899999999999999999999999999999887
Q ss_pred ------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccccccc
Q psy16434 528 ------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYL 583 (745)
Q Consensus 528 ------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~l 583 (745)
.+|++|++|||+|+.+++++|++. ..++|||+.++ .+.||...|||||+.
T Consensus 424 ~L~~~~~~~g~~q~~i~~~a~ALe~ip~~la~NaG~d~~~vv~~l~~~----~~~~G~d~~~g--~~~dm~~~gI~Dp~~ 497 (547)
T 1kp8_A 424 KLADLRGQNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGG----DGNYGYNAATE--EYGNMIDMGILDPTK 497 (547)
T ss_dssp HTTTCCCSSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHS----CTTEEEETTTT--EEEETTTTTCEEEHH
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc----CCCEeEeCCCC--ccccchhcCceechH
Confidence 578999999999999999999864 25789999999 999999999999999
Q ss_pred chhhHhhhhhhcchhhccccccee
Q psy16434 584 TKMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~kI 607 (745)
|+..+|+.|++.+.|++++|++..
T Consensus 498 vk~~al~~A~~~A~~iL~id~iI~ 521 (547)
T 1kp8_A 498 VTRSALQYAASVAGLMITTECMVT 521 (547)
T ss_dssp HHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHhHhheee
Confidence 999999999999999999998665
|
| >3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-60 Score=538.26 Aligned_cols=354 Identities=21% Similarity=0.229 Sum_probs=253.7
Q ss_pred cChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChh----hHHHHHHHhhhhchhc
Q psy16434 183 SGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPA----AKLIILGSQMQEEEMG 258 (745)
Q Consensus 183 ~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~----akll~~~s~~qd~~~G 258 (745)
+| +++|.+|+.||.+|+++|+|||||+||||||+++.|+++|||||+||||+|+++||+ |||++++|++||+++|
T Consensus 7 ~~-~~ar~~~~~~~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hp~~n~gAkll~e~a~~qd~e~G 85 (546)
T 3rtk_A 7 YD-EEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAG 85 (546)
T ss_dssp -------------------------------------------------------CCCHHHHHHHHHHHHHHTSCC----
T ss_pred cc-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECcHHHHHHHccCCChhhhHHHHHHHHHHHhhhhhhC
Confidence 44 689999999999999999999999999999999999999999999999999999998 8999999999999999
Q ss_pred CccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy16434 259 DGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKL 338 (745)
Q Consensus 259 DGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~ 338 (745)
|| |||+++||++||+++.+++++|+||+.|++||++
T Consensus 86 DG--------------------------------------------TTtvvVLAgeLL~ea~~li~~GihP~~I~~G~~~ 121 (546)
T 3rtk_A 86 DG--------------------------------------------TTTATVLAQALVREGLRNVAAGANPLGLKRGIEK 121 (546)
T ss_dssp -----------------------------------------------CHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CC--------------------------------------------cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99 9999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcc
Q psy16434 339 ALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLF 418 (745)
Q Consensus 339 a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~ 418 (745)
|++.+++.|++++++. .+++.|.++|++|++ +++|++|+++|+.+++++ + .|+|++.. +...
T Consensus 122 A~~~a~e~L~~~s~~v----~~~e~L~~vA~iS~~------~~~i~~liadAv~~V~~d--g-----vI~Ve~~~-~~~~ 183 (546)
T 3rtk_A 122 AVEKVTETLLKGAKEV----ETKEQIAATAAISAG------DQSIGDLIAEAMDKVGNE--G-----VITVEESN-TFGL 183 (546)
T ss_dssp HHHHHHHHHHHTCBCC----CSHHHHHHHHHHHHT------CHHHHHHHHHHHHHSCTT--S-----EEEEECCS-SSSC
T ss_pred HHHHHHHHHHHhcccC----CChHHHHhHeEEeCC------chHHHHHHHHHHHHhccC--C-----ceEEEecC-Cccc
Confidence 9999999999998763 367889999998886 468999999999999864 3 27777643 4557
Q ss_pred cceeEeeEEEeecccC---------CceeeeCceEEEeccCCCcccccc-----------C-------------------
Q psy16434 419 NSEIVQGMVFKRSVEG---------DITKQTKAKIAVYTCPVDIATTET-----------K------------------- 459 (745)
Q Consensus 419 dS~lv~G~~l~~~~~~---------~~~~i~nakIlil~~~Le~~k~e~-----------k------------------- 459 (745)
||++++||+|++++.+ +|++++|||||+++++++..+.-. +
T Consensus 184 ds~lveGm~fdkg~~sp~~vt~~e~m~~~len~kIll~d~kIs~~~~l~~~le~I~~~g~~lvIi~~~I~~~Al~~L~~n 263 (546)
T 3rtk_A 184 QLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVN 263 (546)
T ss_dssp EEEEECEEEESCCBSSGGGCSBTTTTBEEEESCEEEEBSSEECCSTTTHHHHHHHHTTTCCEEEEESEECHHHHHHHHHH
T ss_pred ceEEeeeEEEcCCccCcccccCcccCeeEecccEEEEECCccCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHh
Confidence 8999999999999865 478999999999999765433210 0
Q ss_pred --------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEeccc----
Q psy16434 460 --------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAA---- 491 (745)
Q Consensus 460 --------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l---- 491 (745)
+++++++||+|++++ +|++++++|.|+..
T Consensus 264 ~lrg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~---i~~d~~~~i~g~~~~~~i 340 (546)
T 3rtk_A 264 KIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVV---VTKDETTIVEGAGDTDAI 340 (546)
T ss_dssp HHHSSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCSSSSCCSTTCCTTTSEEEEEEE---ECSSCEEEEEECSCHHHH
T ss_pred CCCCceEEEEeccccccccchhhHHHHHHHhCCEEeeccccCccccCCHhhCCeeEEEE---EcCCeEEEEcCCCCHHHH
Confidence 467788999999996 68899999998753
Q ss_pred ------------------------------ccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH--------------
Q psy16434 492 ------------------------------ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK-------------- 527 (745)
Q Consensus 492 ------------------------------~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~-------------- 527 (745)
+++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 341 ~~r~~~i~~~~~~~~s~~~~ekl~erlakl~g~~atI~vrG~te~~l~E~er~l~DAl~a~r~av~~giVpGGGa~e~~~ 420 (546)
T 3rtk_A 341 AGRVAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVTLLQA 420 (546)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCEEEEECCCCSSTHHHHHHHHHHHHHHHHHHHHHHCEEETTTHHHHTT
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccCCcHHHHHH
Confidence 235799999999999999999999999999999987
Q ss_pred -------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccc
Q psy16434 528 -------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLY 582 (745)
Q Consensus 528 -------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~ 582 (745)
.+|++|++|||+|+.+++++|++. . ..+|||+.++ ++.||...|||||+
T Consensus 421 s~~L~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~-~---~~~G~d~~~g--~~~Dm~~~gI~dp~ 494 (546)
T 3rtk_A 421 APTLDELKLEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNL-P---AGHGLNAQTG--VYEDLLAAGVADPV 494 (546)
T ss_dssp GGGSTTSCCCTTHHHHHHHHHHHTTHHHHHHHTTTTCCHHHHHHHHHHS-C---TTEECCSSSC--CCEETTTTTCEEEH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh-c---CCEeEcCCCC--cEeeHHHcCCEecH
Confidence 578999999999999999999874 2 2389999999 99999999999999
Q ss_pred cchhhHhhhhhhcchhhcccccceee
Q psy16434 583 LTKMWALKYATSAANTILQQTKAKIA 608 (745)
Q Consensus 583 lVkG~vL~~A~e~a~mil~IDn~kIl 608 (745)
.|+.++|+.|++.+.|++++|++...
T Consensus 495 ~vk~~al~~A~e~A~~iL~id~iI~~ 520 (546)
T 3rtk_A 495 KVTRSALQNAASIAGLFLTTEAVVAD 520 (546)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988653
|
| >3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.6e-34 Score=326.47 Aligned_cols=268 Identities=18% Similarity=0.205 Sum_probs=226.2
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHHH----HH
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVFV----KT 532 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~IP----r~ 532 (745)
+||.++++.++++.|++++|| |++++|+|+.+ ..+..++-+|. |..|.++++.+++.|++.++.....+. ..
T Consensus 61 ~hP~Akll~e~a~~qd~e~GDGTTtvvvLAgeLL-~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~ 139 (515)
T 3iyg_G 61 QHPAAKSMIEISRTQDEEVGDGTTSVIILAGEML-SVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSNRDT 139 (515)
T ss_pred CCHHHHHHHHHHHHhhhhhCCChhhHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHH
Confidence 789999999999999999999 88889999988 77888888897 889999999999999999987653111 12
Q ss_pred HHhhccchhhHHHHHHHHHhhcCC----------------ccceeeecCCCcceeecccccccccccchhhHhhhhhhcc
Q psy16434 533 LAENTGVKSNEVISKLYSAHNEGK----------------KTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAA 596 (745)
Q Consensus 533 LaeNAGld~~~vlsKL~~~h~~g~----------------~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a 596 (745)
|..-| .+.+.+|+...+.+.. ....+|+.+ .++|++++|+++.|+.+|+|++|++...+.
T Consensus 140 l~~va---~tsl~sK~i~~~~~~~~~i~vdav~~V~~~~~~~~~~dl~~-~I~I~ki~Ggs~~ds~lv~G~v~dk~~~~~ 215 (515)
T 3iyg_G 140 MLNII---NSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKK-YARVEKIPGGIIEDSCVLRGVMINKDVTHP 215 (515)
T ss_pred HHHHH---HHHhcCCchhhHHHHHHHHHHHHHHhcccccCCCcccchhh-eeEEEEecCCCcccceEEeeEEEeCCCCCC
Confidence 22111 1112222211111100 011133322 158999999999999999999999999999
Q ss_pred hhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHc
Q psy16434 597 NTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKY 676 (745)
Q Consensus 597 ~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~ 676 (745)
.|+++++||+|++++|||||+++++++++.+++++++++++++|+++++++|++|++.|+||||++++|+|+|+|||.++
T Consensus 216 ~m~~~ien~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~ 295 (515)
T 3iyg_G 216 RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRA 295 (515)
T ss_pred CCcceeeeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcc-cCCceEe--cccccCccccc
Q psy16434 677 GLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSF-CPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 677 gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~-c~~~~~~--~~e~~~~~~~~ 732 (745)
||++++++++++|+|||++|||+++++++++.+++||+ |+.|++. |+++|++.+.|
T Consensus 296 ~I~av~~~~k~~leria~~tGa~ii~~l~~l~~~~LG~~a~~v~~~~~g~~~~~~i~g~ 354 (515)
T 3iyg_G 296 NITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITEC 354 (515)
T ss_pred CceeeccCCHHHHHHHHHHhCCeeeccccccChhhcCCcccEEEEEEECCceEEEEeCC
Confidence 99999999999999999999999999999999999999 9999985 77888765544
|
| >1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.8e-33 Score=272.85 Aligned_cols=154 Identities=25% Similarity=0.321 Sum_probs=147.0
Q ss_pred chhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCC
Q psy16434 584 TKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGA 663 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~ 663 (745)
|+|+++++.+.+..|++++.||+|++++||||++++++++++.++++++++++.++|+++++++|++|+++|+||||++|
T Consensus 1 i~Gvv~~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k 80 (159)
T 1ass_A 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQK 80 (159)
T ss_dssp CCCEEESCCCSCTTSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEESS
T ss_pred CceEEEecccCCCCCCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEEECC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCcccccccccc
Q psy16434 664 KFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTCKYLHQ 737 (745)
Q Consensus 664 ~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~~~~~~ 737 (745)
+|+|+|+|||.++||++++|++++||+|||++|||+++++++++.++.||+|+.|+++ |+++|++-+.|+--|.
T Consensus 81 ~I~d~a~~~l~k~gI~~v~~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~v~e~~ig~~~~~~~~g~~~~~~ 156 (159)
T 1ass_A 81 GIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNHHH 156 (159)
T ss_dssp CBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEESCC----
T ss_pred ccCHHHHHHHHHCCCEEEccCCHHHHHHHHHHhCCeeeCccccCCcccCccceEEEEEEECCeEEEEEECCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999996 9999999999987664
|
| >1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A | Back alignment and structure |
|---|
Probab=99.98 E-value=4.9e-33 Score=275.94 Aligned_cols=155 Identities=15% Similarity=0.201 Sum_probs=134.2
Q ss_pred ccccccchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q psy16434 578 ILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGAN 657 (745)
Q Consensus 578 I~Ds~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvn 657 (745)
+.||.+++|+++++.+.+..|++++.|++|++++||||++++++++++.++++++++++.++|+++++++|++|+++|+|
T Consensus 1 ~~dS~lv~Gvvl~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~n 80 (178)
T 1gml_A 1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPD 80 (178)
T ss_dssp --CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEEEEEeccccCCCCCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcc-cCCceEe--cccccCccccc
Q psy16434 658 VVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSF-CPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 658 VVl~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~-c~~~~~~--~~e~~~~~~~~ 732 (745)
|||++|+|+|+|+|||.++||++++|++++||+|||++|||+++++++++.+++||+ |+.|+++ |+++|.+-+.|
T Consensus 81 VVl~~k~I~d~a~~~l~k~gI~~vr~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~~v~~~~ig~~~~~~~~gc 158 (178)
T 1gml_A 81 VVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDC 158 (178)
T ss_dssp EEEESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEECCcccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCeEeCChhhCChhhhCCcccEEEEEEECCeEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999 9999985 88998655544
|
| >3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-33 Score=316.71 Aligned_cols=268 Identities=17% Similarity=0.179 Sum_probs=225.0
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHHH------
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVFV------ 530 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~IP------ 530 (745)
+||.++++.++++.|++++|| |++++|+|+.+ ..+..++-+|. |..+.++++.+++.|++.++.....+.
T Consensus 64 ~hp~Akll~e~a~~qd~e~GDGTTtvvVLA~~LL-~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~ 142 (513)
T 3iyg_B 64 DNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELL-REAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKF 142 (513)
T ss_pred cCHHHHHHHHHHHHhhhhhCCChhhhHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCcccccccC
Confidence 789999999999999999999 88999999988 77888888897 889999999999999999987653221
Q ss_pred -HHHHhhccchhhHHHHHHHHHhhcCC--------ccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcc
Q psy16434 531 -KTLAENTGVKSNEVISKLYSAHNEGK--------KTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601 (745)
Q Consensus 531 -r~LaeNAGld~~~vlsKL~~~h~~g~--------~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~ 601 (745)
..|.+-| .+.+.+|+.+.+.+.. ..+|-+++.+.+++.++.++++.|+.+++|++|++...+. |+++
T Consensus 143 ~~~l~~va---~tslssK~~~~~~~~i~~livdAv~~V~~~~d~~~I~V~ki~gg~~~ds~lv~G~v~dk~~~~~-m~~~ 218 (513)
T 3iyg_B 143 RQDLMNIA---GTTLSSKLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVN-QPKR 218 (513)
T ss_pred HHHHHHHH---HhhhcccccccchHHHHHHHHHHHHHhcccCCcCeEEEEEeCCCCccceeEEeeEEEeccccCC-Ccee
Confidence 1222211 1122222211111100 0112122224458999999999999999999999988776 9999
Q ss_pred cccceeeeeccCccccccc-ccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeE
Q psy16434 602 QTKAKIAVYTCPVDIATTE-TKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMG 680 (745)
Q Consensus 602 IDn~kIlll~~~Le~~k~e-~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ 680 (745)
++||+|+++++||||++++ +++++.++++++++++.++|++++++++++|+++|+||||++++|+|+|+|||.++||++
T Consensus 219 ~en~kIll~~~~Le~~k~e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~al~~L~~~~I~a 298 (513)
T 3iyg_B 219 IENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMA 298 (513)
T ss_pred ecCceEEEEcCCcccccccccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHcCceE
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 681 VRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 681 ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
++++++++|+|||++|||+++++++++.+++||+|++|++. |+|+|.+-..|
T Consensus 299 v~~~~~~~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~ 352 (513)
T 3iyg_B 299 IEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGV 352 (513)
T ss_pred EecCCHHHHHHHHHHhCCEEecccccCCHhHCCcccEEEEEEECCeEEEEEecC
Confidence 99999999999999999999999999999999999999984 88988765544
|
| >3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-33 Score=315.83 Aligned_cols=285 Identities=18% Similarity=0.179 Sum_probs=231.3
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.++|..-...+.-.-+||.++++.++++.|++++|| |++++|+|+.+ ..+..++-+|. |..+.++++.+++.|++
T Consensus 47 ~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~~~GDGTTtvvVLA~~Ll-~~a~~li~~GihP~~I~~G~~~A~~~a~~ 125 (515)
T 3iyg_H 47 ATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFL-KQVKPYVEEGLHPQIIIRAFRTATQLAVN 125 (515)
T ss_pred eEEECCHHHHHHHccCCCHHHHHHHHHHHHhhceeCcchhhHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 3444433233332223789999999999999999999 88999999988 78888888897 88999999999999999
Q ss_pred HHHHHHHHH--------HHHHHhhccchhhHHHHHHHHHhhcCCc--------cceeeecCCCcceeecccccccccccc
Q psy16434 521 TFKGITKVF--------VKTLAENTGVKSNEVISKLYSAHNEGKK--------TYGFDINGENSSVIDAAEAGILDLYLT 584 (745)
Q Consensus 521 vlk~~~~~I--------Pr~LaeNAGld~~~vlsKL~~~h~~g~~--------~~GIDl~~~~ikI~dm~g~gI~Ds~lV 584 (745)
.++.....+ ...|.+-| .+.+.+|+.+.+.+... .+|-+++.+.++|.++.|+.+.|+.++
T Consensus 126 ~L~~~a~~v~~~~~~~~~~~L~~va---~tsl~sK~~s~~~~~i~~livdAv~~V~~~~d~~~I~V~k~~Gg~~~ds~lv 202 (515)
T 3iyg_H 126 KIKEIAVTVKKEDKVEQRKLLEKCA---MTALSSKLISQQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEESQLV 202 (515)
T ss_pred HHHHhhcccccCChHHHHHHHHHHH---HHHhcCCcccccHHHHHHHHHHHHHHhcccCCcceEEEEecCCCCccceEEE
Confidence 998765322 11111111 12222222211111100 112122234458999999999999999
Q ss_pred hhhHhhhhhhcch---hhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEe
Q psy16434 585 KMWALKYATSAAN---TILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVA 661 (745)
Q Consensus 585 kG~vL~~A~e~a~---mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~ 661 (745)
+|++|++...+.. |+++++||+|+++++|||++++++++++.+++++++++++++|++++++++++|++.|++|||+
T Consensus 203 ~G~~~dk~~~~p~~~~~p~~~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~ 282 (515)
T 3iyg_H 203 AGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLS 282 (515)
T ss_pred eeeEEecCccCcccccCCccccccEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 9999999988775 4789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 662 GAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 662 ~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
+++|+|+|+|||+++||++++++++++|+|||++|||+++++++++.+++||+|+.|++. |+++|++.+.|
T Consensus 283 ~~~I~dla~~~l~~~gI~~v~~~~k~~leria~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~g~ 355 (515)
T 3iyg_H 283 KLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGC 355 (515)
T ss_pred CCcccHHHHHHHHHcCCcccccccHHHHHHHHHHhCCEEeeccccCCHHHCCcccEEEEEEEcCeEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999996 78888766554
|
| >3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-33 Score=317.89 Aligned_cols=268 Identities=22% Similarity=0.257 Sum_probs=224.7
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHH-HHHHH----HH
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKG-ITKVF----VK 531 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~-~~~~I----Pr 531 (745)
+||.++++.++++.|++++|| |++++|+|+.+ ..+..++-+|. |..|.++++.+++.|++.++. ....+ ..
T Consensus 62 ~hP~akll~~~a~~qd~e~GDGTTtvvvLA~eLL-~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e 140 (529)
T 3iyg_A 62 EHPAAKVLCELADLQDKEVGDGTTSVVIIAAELL-KNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRD 140 (529)
T ss_pred CChHHHHHHHHHHHhhhhhCCChhhHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHH
Confidence 789999999999999999999 88899999988 77888888897 889999999999999999987 43211 11
Q ss_pred HHHhhcc--c------hhhHHHHHHHHHh--------hcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhc
Q psy16434 532 TLAENTG--V------KSNEVISKLYSAH--------NEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSA 595 (745)
Q Consensus 532 ~LaeNAG--l------d~~~vlsKL~~~h--------~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~ 595 (745)
.|..-|. + ...+.+.++.... .++. ..+|+.+ +++.++.|+++.|+.+++|++|++...+
T Consensus 141 ~l~~va~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~g~--~~~dv~~--I~I~k~~G~~~~ds~lv~G~v~dk~~~~ 216 (529)
T 3iyg_A 141 CLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQ--PRYPVNS--INVLKAHGRSQMESMLINGYALNCVVGS 216 (529)
T ss_pred HHHHHHHHHhccCcccccHHHHHHHHHHHHHHHhhhccCCC--cccccce--EEEEEecCCCccceEEEeeeEEecCccc
Confidence 2221110 0 0112222222110 0111 1234433 4889999999999999999999999999
Q ss_pred chhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHH
Q psy16434 596 ANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNK 675 (745)
Q Consensus 596 a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k 675 (745)
..|+++++|++|++++||||++++++++++.++++++++.+.++|++++++++++|+++|+||||++++|+|+|+|||.+
T Consensus 217 ~~m~~~ien~kIlll~~~le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~ 296 (529)
T 3iyg_A 217 QGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVE 296 (529)
T ss_pred ccCCcccCCceEEEecCCcccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEeCCHHHHHHHHHHhCCeecccCCCCC------CCCCcccCCceEe--cccccCccccc
Q psy16434 676 YGLMGVRLNSKFDLRRLCKAVNATALPRLVSTY------IKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 676 ~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~------~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
+||++++++++++|+|||++|||+++++++++. +++||+|+.|+++ |+++|.+.+.|
T Consensus 297 ~gI~av~~v~k~~leria~~tGa~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~ 361 (529)
T 3iyg_A 297 AGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNT 361 (529)
T ss_pred cCCceeccCCHHHHHHHHHHhCCeeecchhcccchhccChhhCccceEEEEEEeCCceEEEEEcC
Confidence 999999999999999999999999999998765 5789999999975 88888766554
|
| >3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-33 Score=315.90 Aligned_cols=267 Identities=18% Similarity=0.197 Sum_probs=226.3
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVFV---KTL 533 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~IP---r~L 533 (745)
+||.++++.++++.|++++|| |++++|+|+.+ ..+..++-+|. |..|.++++++++.|++.++.....++ ..|
T Consensus 62 ~hp~akll~~~a~~qd~e~GDGTTtvvvLa~~Ll-~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~L 140 (517)
T 3iyg_Z 62 QHPTASLIAKVATAQDDITGDGTTSNVLIIGELL-KQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETL 140 (517)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCceeHHHHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhCcCCCCCHHHH
Confidence 789999999999999999999 88888999988 78888888998 889999999999999999987653211 122
Q ss_pred HhhccchhhHHHHHHHHHhhcCCcc-------------ceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhc
Q psy16434 534 AENTGVKSNEVISKLYSAHNEGKKT-------------YGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600 (745)
Q Consensus 534 aeNAGld~~~vlsKL~~~h~~g~~~-------------~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil 600 (745)
.+-| .+++.+|+...+++.+.. -.+|++. ++|.++.|+.+.|+.+++|++|++...+..|++
T Consensus 141 ~~va---~tsl~sKi~~~~~d~la~l~vdaV~~V~~~~~~~dl~~--I~I~k~~Gg~~~ds~lv~G~v~dk~~~~p~m~~ 215 (517)
T 3iyg_Z 141 IDVA---RTSLRTKVHAELADVLTEAVVDSILAIKKQDEPIDLFM--VEIMEMKHKSETDTSLIRGLVLDHGARHPDMKK 215 (517)
T ss_pred HHHH---HHHhccccchhHHHHHHHHHHHHhheeccCCCcCChhH--heeeeecCCCccccceEeeEEEeccCCCCCccc
Confidence 2211 122222222222111111 1234433 599999999999999999999999999999999
Q ss_pred ccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCc---------EEEeCCcccHHHHH
Q psy16434 601 QQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGAN---------VVVAGAKFGDMALH 671 (745)
Q Consensus 601 ~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvn---------VVl~~~~I~d~al~ 671 (745)
+++||+|+++++||||+++++++++.++++++++++.++|+++++++|++|+.+|++ |||++++|+|+|+|
T Consensus 216 ~ien~kIll~~~~le~~k~e~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~al~ 295 (517)
T 3iyg_Z 216 RVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLD 295 (517)
T ss_pred cccCCeEEEecccccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCceEEEecccCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988 49999999999999
Q ss_pred HHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCC-CcccCCceEe--cccccCcccccc
Q psy16434 672 YLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKM-PSFCPAPPVQ--GRERDRPAQTCK 733 (745)
Q Consensus 672 ~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~-LG~c~~~~~~--~~e~~~~~~~~~ 733 (745)
||.++||++++++++++|+|||++|||+++++++++.+++ ||+|+ |++. |+++|++.+.|.
T Consensus 296 ~L~~~gI~~v~~v~~~~leria~~tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~~~~~~~~g~~ 359 (517)
T 3iyg_Z 296 ALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAG-VYEYTLGEEKFTFIEKCN 359 (517)
T ss_pred HHHHCCCEEEEecCHHHHHHHHHHhCCEEecchhhCcccccCCcce-EEEEEEcCceEEEEeCCC
Confidence 9999999999999999999999999999999999999999 99999 9875 888887766553
|
| >3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-32 Score=310.57 Aligned_cols=270 Identities=22% Similarity=0.251 Sum_probs=225.8
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH------H
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF------V 530 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I------P 530 (745)
+||.++++.++++.|++++|| |++++|+++.+ ..+..++-.|. |..+.++++.+++.|++.++.....+ .
T Consensus 62 ~hP~Akll~~~a~~qd~~~GDGTTtvvVLA~~Ll-~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~ 140 (515)
T 3iyg_E 62 DHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALL-EEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNT 140 (515)
T ss_pred CCHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhceecCCCccCH
Confidence 789999999999999999999 88999999988 77888888897 88999999999999999998765322 1
Q ss_pred HHHHhhccc--------hhhHHHHHHHHHhh---cCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhh
Q psy16434 531 KTLAENTGV--------KSNEVISKLYSAHN---EGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTI 599 (745)
Q Consensus 531 r~LaeNAGl--------d~~~vlsKL~~~h~---~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mi 599 (745)
..|++-|.. ...+.++++-...- .....-.+|+ +.++|.++.|+++.|+.+++|++|++...+..|+
T Consensus 141 ~~l~~vA~tsl~sK~i~~~~~~l~~l~~dav~~V~~~~~~~~d~--~~I~I~k~~Ggs~~ds~lv~G~~~dk~~~~~~m~ 218 (515)
T 3iyg_E 141 EPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDF--ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP 218 (515)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhhcccccCCCCc--ccEEEEEecCCCcccceEEeeEEEeccccccccc
Confidence 223222100 01122222211100 0000001333 3359999999999999999999999999999999
Q ss_pred cccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCe
Q psy16434 600 LQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLM 679 (745)
Q Consensus 600 l~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl 679 (745)
++++++++++++|||++.++++++++.+++++++++|.++|+++++.++++|++.|++|||++++|+++|+|||.++||+
T Consensus 219 ~~~~~~kIall~~~le~~k~~~~~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vvi~~~~I~~~al~~L~~~~I~ 298 (515)
T 3iyg_E 219 KQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLP 298 (515)
T ss_pred ccCCCceEEEEcCccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cc--cccCccccc
Q psy16434 680 GVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GR--ERDRPAQTC 732 (745)
Q Consensus 680 ~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~--e~~~~~~~~ 732 (745)
+++++++++|+|||++|||+++++++++.+++||+|++|++. |. ++|.+.+.|
T Consensus 299 ~v~~v~k~~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~k~~~~~~~g~ 355 (515)
T 3iyg_E 299 AVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQC 355 (515)
T ss_pred EEeccCHHHHHHHHHHhCCEEecccccCCHHHCCcceEEEEEEeccccceEEEEEcC
Confidence 999999999999999999999999999999999999999995 44 677665544
|
| >3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-32 Score=309.15 Aligned_cols=273 Identities=24% Similarity=0.257 Sum_probs=188.2
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH----H--
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF----V-- 530 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I----P-- 530 (745)
+||.++++.++++.|++++|| |++++|+|+.+ ..+..++-+|. |..|.++++++++.|++.++.....+ .
T Consensus 25 ~hP~Akll~e~a~~qd~e~GDGTTtvvvLa~~LL-~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~ 103 (500)
T 3aq1_B 25 QHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELL-SKAEELIMKGVHSTIISEGYRHAAEKCREILETITIAISPDDEAA 103 (500)
T ss_dssp ------------------CCHHHHHHHHHHHHHH-HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHH
T ss_pred CCHHHHHHHHHHHhhhhhhCCChHHHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHH
Confidence 789999999999999999999 89999999988 77777888887 88999999999999999998765311 1
Q ss_pred -HHHHhhc---cc--hhhHHHHHHHHHhhcCCccc--ee-eec-CCCcceeecccccccccccchhhHhhhhhhcchhhc
Q psy16434 531 -KTLAENT---GV--KSNEVISKLYSAHNEGKKTY--GF-DIN-GENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600 (745)
Q Consensus 531 -r~LaeNA---Gl--d~~~vlsKL~~~h~~g~~~~--GI-Dl~-~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil 600 (745)
..++..+ -. ...+.+.++....-..-..- |. +++ .+++++.++.|+++.|+.+++|++|++...+..|++
T Consensus 104 l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~ 183 (500)
T 3aq1_B 104 LIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHPNMPE 183 (500)
T ss_dssp HHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEEESSCGGGCEEESEEEESCCCSSTTSCS
T ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHHHHhcccccCCccccccccEEEEEecCCCccceEEEeeeEEeecCCCCCCcc
Confidence 2222211 00 12344445433221110000 11 111 122588899999999999999999999999999999
Q ss_pred ccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeE
Q psy16434 601 QQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMG 680 (745)
Q Consensus 601 ~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ 680 (745)
+++||+|++++++||++++++++++.++++++++.+.++|+++++.++++|+++|+||||++++|+++|+|||.++||++
T Consensus 184 ~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~a 263 (500)
T 3aq1_B 184 KVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKGIDDMAQYYIEKAGIYA 263 (500)
T ss_dssp EEEEEEEEEESSCBCC-------------------------CHHHHHHHHHHTTCCSEEEESSCBCHHHHHHHHHTTCEE
T ss_pred cccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEECCCcCHHHHHHHHHCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCcccccc
Q psy16434 681 VRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTCK 733 (745)
Q Consensus 681 ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~~ 733 (745)
++++++++|+|||++|||+++++++++.+++||+|++|++. |+++|++.+.|.
T Consensus 264 v~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~ 318 (500)
T 3aq1_B 264 VRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTYVTGCQ 318 (500)
T ss_dssp ECSCCHHHHHHHHHHHCCCCBSCTTCCCSTTCEEEEEEEEEECSSSEEEEEEEET
T ss_pred EEeCCHHHHHHHHHHhCCeEecccccCCHhHCCCceEEEEEEecCeEEEEEECCC
Confidence 99999999999999999999999999999999999999996 789988766653
|
| >1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-33 Score=317.51 Aligned_cols=271 Identities=21% Similarity=0.240 Sum_probs=228.8
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH----HHH
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF----VKT 532 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I----Pr~ 532 (745)
+||.++++.++++.|++++|| |++++|+|+.+ ..+..++-+|. |..|.++++++++.|++.++.....+ ...
T Consensus 73 ~hP~Akll~e~a~~qd~e~GDGTTtvvvLA~~LL-~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~ 151 (543)
T 1a6d_B 73 EHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLL-QQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEKAL 151 (543)
T ss_dssp CSHHHHHHHHHHTCTTCCCTTHHHHHHHHHHHHH-HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTHHHH
T ss_pred cchHHHHHHHHHHhcCCEECCChhHHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 789999999999999999999 89999999988 77778888897 88999999999999999998765311 111
Q ss_pred HHhhcc------c--hhhHHHHHHHHHh-----hcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhh
Q psy16434 533 LAENTG------V--KSNEVISKLYSAH-----NEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTI 599 (745)
Q Consensus 533 LaeNAG------l--d~~~vlsKL~~~h-----~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mi 599 (745)
|..-|. . ...+.+.++.... .+.....-+|++ .+++.++.|+++.|+.+++|++|++...+..|+
T Consensus 152 l~~va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~--~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~ 229 (543)
T 1a6d_B 152 LLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFD--NIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMP 229 (543)
T ss_dssp HHHHHHHHHTTSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECGG--GEEEEEEESSCGGGCEEESEEEESCCCSSTTSC
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHhcccccCCcccccc--eEEEEEecCCCccceeEEccEEEecCCCCCCCc
Confidence 211110 0 1123333332211 000000113432 358999999999999999999999999999999
Q ss_pred cccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCe
Q psy16434 600 LQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLM 679 (745)
Q Consensus 600 l~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl 679 (745)
++++|++|++++++||++++++++++.++++++++.|.++|+++++.++++|+++|++|||++++|+++|+|||.++||+
T Consensus 230 ~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~ 309 (543)
T 1a6d_B 230 DVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIY 309 (543)
T ss_dssp SEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHTTCE
T ss_pred ceecCCeEEEEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCHHHHHHHHHCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCcccccc
Q psy16434 680 GVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTCK 733 (745)
Q Consensus 680 ~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~~ 733 (745)
+++++++++|+|||++|||+++++++++.+++||+|+.|++. |+++|.+.+.|.
T Consensus 310 av~~v~k~~le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~ 365 (543)
T 1a6d_B 310 AVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCK 365 (543)
T ss_dssp EECSCCHHHHHHHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEEES
T ss_pred EeccCCHHHHHHHHHHhCCceecccccCCHHHCCCceEEEEEEecCceEEEEecCC
Confidence 999999999999999999999999999999999999999996 889988766653
|
| >3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=308.07 Aligned_cols=283 Identities=28% Similarity=0.428 Sum_probs=232.7
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.++|..-...+.-.-+||.++++.++++.|++++|| |++++|+++.+ ..+..++-+|. |..|.++++.+++.|++
T Consensus 62 ~~ITnDG~TIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLa~~Ll-~~a~~ll~~GihP~~I~~G~~~A~~~a~e 140 (568)
T 3p9d_H 62 IIITNDAATMLRELDIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELL-NVSEKLISMGLSAVEIIQGYNMARKFTLK 140 (568)
T ss_dssp EEEESCHHHHTTTCCCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH-HHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEeCCHHHHHHHcccCCHHHHHHHHHHHhhhceeCCCceehHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 4445543233332223789999999999999999999 88999999988 77777778887 88899999999999999
Q ss_pred HHHHHHHHH------H---HHHHhhc------cchhhHHHHHHHHHhhcC--C------ccceeeecCCCcceeeccccc
Q psy16434 521 TFKGITKVF------V---KTLAENT------GVKSNEVISKLYSAHNEG--K------KTYGFDINGENSSVIDAAEAG 577 (745)
Q Consensus 521 vlk~~~~~I------P---r~LaeNA------Gld~~~vlsKL~~~h~~g--~------~~~GIDl~~~~ikI~dm~g~g 577 (745)
.++.....+ . ..++..+ +.+ +.+.++....-.. . ..-.+|+.. ++|.++.|++
T Consensus 141 ~L~~~a~~v~~~~~~~~~l~~va~tsl~sK~~~~~--~~i~~livdAv~~V~~~~~~~~~~~~~dl~~--I~I~k~~Ggs 216 (568)
T 3p9d_H 141 ELDEMVVGEITDKNDKNELLKMIKPVISSKKYGSE--DILSELVSEAVSHVLPVAQQAGEIPYFNVDS--IRVVKIMGGS 216 (568)
T ss_dssp HHHHHCCSCCCCCCTTHHHHHHHHHHHTTTSTTCH--HHHHHHHHHHHTTSCC---------CCCGGG--CEEEEEESSC
T ss_pred HHHHhccccCCCCCCHHHHHHHHHHHhhccCcchH--HHHHHHHHHHHHHHhhccccccCCcccccce--EEEEEccCCC
Confidence 998765311 0 1122211 212 4445544322110 0 001245443 4999999999
Q ss_pred ccccccchhhHhhhhhhcchhhcccc---cceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy16434 578 ILDLYLTKMWALKYATSAANTILQQT---KAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADT 654 (745)
Q Consensus 578 I~Ds~lVkG~vL~~A~e~a~mil~ID---n~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~ 654 (745)
+.|+.+++|++|++..+ .|+++++ +++|++++|+||++++++++++.+++++++++|.++|++++++++++|+++
T Consensus 217 ~~dS~lv~G~v~dk~~~--~m~~~i~~~~n~kIlll~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~ 294 (568)
T 3p9d_H 217 LSNSTVIKGMVFNREPE--GHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADM 294 (568)
T ss_dssp GGGCEEESSCCBSSCBS--SGGGSCCCCSSCEEEEECSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchheeeccEEEeeccc--CCcEEEecCCcceEEEEccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998764 7999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 655 GANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 655 gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
|+||||++++|+|+|+|||.++||++++++++++|+|||++|||+++++++++.+++||+|+.|++. |.++|++.+.|
T Consensus 295 g~~vvi~~~~I~~~al~~L~~~gI~av~~v~~~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~ 374 (568)
T 3p9d_H 295 GVECIVAGAGVGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQE 374 (568)
T ss_dssp TCCEEEECSCCCHHHHHHHHHHTCEEECCCCHHHHHHHHHHHSCCCCSSSSCCCGGGCEECSCCCCCEETTEECBCCCCC
T ss_pred CCeEEEECCCcChHHHHHHHHCCeEEEecCCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEecCceEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999985 78899887776
Q ss_pred c
Q psy16434 733 K 733 (745)
Q Consensus 733 ~ 733 (745)
.
T Consensus 375 ~ 375 (568)
T 3p9d_H 375 Q 375 (568)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-31 Score=305.51 Aligned_cols=270 Identities=19% Similarity=0.255 Sum_probs=224.4
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHHH----HH
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVFV----KT 532 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~IP----r~ 532 (745)
+||.++++.++++.|++++|| |++++|+|+.+ ..+..++-+|. |..+.++++.+++.|++.++.....+. ..
T Consensus 63 ~hP~akll~~~a~~qd~~~GDGTTtvvVLA~~Ll-~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~ 141 (518)
T 3iyg_D 63 LHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLL-DSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSDRET 141 (518)
T ss_pred chHHHHHHHHHHHHhhhhhCCCceeHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHheeeCCCCChHH
Confidence 789999999999999999999 88899999988 77888888897 889999999999999999988654211 22
Q ss_pred HHhhcc--chh------hHHHHHHHHHhhc--CCc--cceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhc
Q psy16434 533 LAENTG--VKS------NEVISKLYSAHNE--GKK--TYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600 (745)
Q Consensus 533 LaeNAG--ld~------~~vlsKL~~~h~~--g~~--~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil 600 (745)
|.+-|. +.. .+.+.++....-. +.. .--+|+.. ++|.++.|+.+.|+.+++|++|++...+ .|+.
T Consensus 142 l~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~~~~d~~~--I~V~k~~Gg~~~ds~lv~G~~~dk~~~~-~mp~ 218 (518)
T 3iyg_D 142 LLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRD--IKIVKKLGGTIDDCELVEGLVLTQKVAN-SGIT 218 (518)
T ss_pred HHHHhHhhhccccchhhHHHHHHHHHHHHHHhhccccCCCcccce--EEEEEcCCCChhhheEeccEEEeccccc-CCCc
Confidence 222110 000 1222222211000 000 00134432 4889999999999999999999999888 9999
Q ss_pred ccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEe-----CCcccHHHHHHHHH
Q psy16434 601 QQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVA-----GAKFGDMALHYLNK 675 (745)
Q Consensus 601 ~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~-----~~~I~d~al~~L~k 675 (745)
+++|+++++++|+||++++++++++.+++++++++|.++|++++.+++++|++.|+||||+ +++|+++|+|||.+
T Consensus 219 ~i~n~kIlll~~~Le~~k~~~~~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~lvi~~k~i~~~~I~~~Al~~L~~ 298 (518)
T 3iyg_D 219 RVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNK 298 (518)
T ss_pred cccCceEEEEEeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred cCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cc-cccCcccccc
Q psy16434 676 YGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GR-ERDRPAQTCK 733 (745)
Q Consensus 676 ~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~-e~~~~~~~~~ 733 (745)
+||++++++++.+|+|||++|||+++++++++.+++||+|+.|++. +. ++|.+.+.|+
T Consensus 299 ~~I~av~~~~~~~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~~g~~~~~~~~~g~~ 359 (518)
T 3iyg_D 299 MKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCA 359 (518)
T ss_pred cCcEEEecCCHHHHHHHHHHhCCEEecccccCCHHHCCcCcEEEEEEeCCCceEEEEECCC
Confidence 9999999999999999999999999999999999999999999985 65 6776555553
|
| >3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-32 Score=313.94 Aligned_cols=270 Identities=23% Similarity=0.272 Sum_probs=227.0
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH----HHH
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF----VKT 532 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I----Pr~ 532 (745)
+||.++++.++++.|++++|| |++++|+++.+ ..+..++-+|. |..|.++++.+++.|++.++.....+ ...
T Consensus 71 ~hP~Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll-~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~ 149 (543)
T 3ruv_A 71 EHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELL-RKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEI 149 (543)
T ss_dssp CCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH-HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHH
T ss_pred cCHHHHHHHHHHHHHHhhhCCCcccHHHHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHH
Confidence 789999999999999999999 88999999988 77777888887 88999999999999999998754311 111
Q ss_pred HHhhcc--ch------hhHHHHHHHHHhhc--CCccce-eeecCCCcceeecccccccccccchhhHhhhhhhcchhhcc
Q psy16434 533 LAENTG--VK------SNEVISKLYSAHNE--GKKTYG-FDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601 (745)
Q Consensus 533 LaeNAG--ld------~~~vlsKL~~~h~~--g~~~~G-IDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~ 601 (745)
|..-|. +. ..+.+.++....-. +.. -| +|++. ++|.+..|+++.|+.+++|++|++...+..|+++
T Consensus 150 L~~va~tsl~sK~~~~~~~~i~~livdAv~~V~~~-~g~~dl~~--I~V~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~ 226 (543)
T 3ruv_A 150 LTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDD-EGKVDKDL--IKIEKKSGASIDDTELIKGVLVDKERVSAQMPKK 226 (543)
T ss_dssp HHHHHHHHHHHTCGGGCCHHHHHHHHHHHHHHCCT-TSCCCGGG--EEEEEEECSCGGGCEEESSEEESCCCSCTTSCSE
T ss_pred HHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcc-CCCcccce--EEEEEcCCCCcccceeecceEEeccccCcccccc
Confidence 211110 00 01223333221100 000 02 45443 4889999999999999999999999999999999
Q ss_pred cccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEE
Q psy16434 602 QTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGV 681 (745)
Q Consensus 602 IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~i 681 (745)
++|++|+++++|||++++++++++.+++++++++++++|++++++++++|+++|+||||++++|+++|+|||.++||+++
T Consensus 227 ~~n~kIll~~~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~I~~~al~~L~~~gI~~v 306 (543)
T 3ruv_A 227 VTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAA 306 (543)
T ss_dssp EEEEEEEEESSCBSCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSCBCHHHHHHHHHTTCEEE
T ss_pred ccCcEEEEEcccccccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHcCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCcccccc
Q psy16434 682 RLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTCK 733 (745)
Q Consensus 682 r~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~~ 733 (745)
+++++++|+|||++|||+++++++++..++||+|+.|++. |+++|.+.+.|.
T Consensus 307 ~~v~k~~le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~ 360 (543)
T 3ruv_A 307 RRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECK 360 (543)
T ss_dssp CSCCHHHHHHHHHHHCCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEECCS
T ss_pred eeCCHHHHHHHHHHhCCceecccccCCHHHCCcccEEEEEEeCCceEEEEECCC
Confidence 9999999999999999999999999999999999999996 788887666553
|
| >1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-32 Score=309.37 Aligned_cols=287 Identities=25% Similarity=0.286 Sum_probs=234.9
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.++|..-...+.-.-+||.++++.++++.|++++|| |++++|+++.+ ..+..++-+|. |..|.++++.+++.|++
T Consensus 59 ~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLA~~LL-~~a~~ll~~GihP~~I~~G~~~A~~~a~~ 137 (548)
T 1q3q_A 59 IVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELL-RKAEELLDQNIHPSIITKGYALAAEKAQE 137 (548)
T ss_dssp EEEESCHHHHHHHSCCCSHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH-HHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEECCHHHHHHHhhccchHHHHHHHHHHhcCCEECCChhHHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 4444433233332223789999999999999999999 89999999988 77778888887 88999999999999999
Q ss_pred HHHHHHHHH----H---HHHHhhc---cc--hhhHHHHHHHHHhhc--CCc---cceeeecCCCcceeeccccccccccc
Q psy16434 521 TFKGITKVF----V---KTLAENT---GV--KSNEVISKLYSAHNE--GKK---TYGFDINGENSSVIDAAEAGILDLYL 583 (745)
Q Consensus 521 vlk~~~~~I----P---r~LaeNA---Gl--d~~~vlsKL~~~h~~--g~~---~~GIDl~~~~ikI~dm~g~gI~Ds~l 583 (745)
.++.....+ . ..++..+ -. ...+.+.++....-. +.. ..-+|+ +.++|.++.|+++.|+.+
T Consensus 138 ~L~~~s~~v~~~d~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~V~~~~~g~~~~d~--~~I~V~k~~G~~~~ds~l 215 (548)
T 1q3q_A 138 ILDEIAIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDL--DNIKFEKKAGEGVEESEL 215 (548)
T ss_dssp HHHHHCEECCTTCHHHHHHHHHHHSCSSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCG--GGEEEEEEEBSCGGGCEE
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhccccCCCccccC--CeEEEEEecCCCccceEE
Confidence 998765311 1 1222211 00 112333333221100 000 011333 345899999999999999
Q ss_pred chhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCC
Q psy16434 584 TKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGA 663 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~ 663 (745)
++|++|++...+..|+++++|++|++++++||++++++++++.++++++++.+.++|+++++.++++|+++|++|||+++
T Consensus 216 v~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~ 295 (548)
T 1q3q_A 216 VRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQK 295 (548)
T ss_dssp ESSEEESCCCSSTTSCSEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESS
T ss_pred EeeEEEeccCCCCCCcceecCCEEEEEecCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCcccccc
Q psy16434 664 KFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTCK 733 (745)
Q Consensus 664 ~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~~ 733 (745)
+|+|+|+|||.++||++++++++++|+|||++|||+++++++++.+++||+|+.|++. |+++|++.+.|.
T Consensus 296 ~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~ 367 (548)
T 1q3q_A 296 GIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCK 367 (548)
T ss_dssp CBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEECCS
T ss_pred CcCHHHHHHHHHCCcEEEccCCHHHHHHHHHHhCCeEecccccCCHHHCCCceEEEEEEecCceEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999996 889988766553
|
| >3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-31 Score=308.25 Aligned_cols=270 Identities=19% Similarity=0.274 Sum_probs=227.7
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH----H--
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF----V-- 530 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I----P-- 530 (745)
+||.++++.++++.|++++|| |++++|+++.+ ..+..++-+|. |..|.++++.+++.|++.|+.....+ .
T Consensus 82 ~hP~Akll~e~a~~qd~e~GDGTTtvvVLA~eLL-~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~e~ 160 (553)
T 3ko1_A 82 QHPAAKLLVQIAKGQDEETADGTKTAVIFSGELV-KKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSINDTDL 160 (553)
T ss_dssp CSHHHHHHHHHHHTCSSSSSTTHHHHHHHHHHHH-HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCEECCTTCHHH
T ss_pred cChhHHHHHHHhhCCcccccCCceeEEEehHHHH-HhHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhcCCCCCCcHHH
Confidence 789999999999999999999 88999999988 77888888887 88999999999999999998654200 0
Q ss_pred -HHHHhhc--c-c--hhhHHHHHHHHHh-----hcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhh
Q psy16434 531 -KTLAENT--G-V--KSNEVISKLYSAH-----NEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTI 599 (745)
Q Consensus 531 -r~LaeNA--G-l--d~~~vlsKL~~~h-----~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mi 599 (745)
..++..+ | . ...+.+.++.... .+......+|+++ ++|.++.|+++.|+.+++|++|++...+..|+
T Consensus 161 L~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~G~~~~dl~~--I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~ 238 (553)
T 3ko1_A 161 LRKIAMTSLSSKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDN--IQIVKKAGGSINDTQLVYGIVVDKEVVHPGMP 238 (553)
T ss_dssp HHHHHHHHHTTSSCCTTHHHHHHHHHHHHHHHCCCTTSSCCCCGGG--EEEEECCCSCGGGCEEESEEEECSCBSCTTSC
T ss_pred HHHHHHHHhhHHhhhhHHHHHHHHHHHHHHHHHHhcCCceEEechh--HHHHHHhCCccccceeeEEEEecccccCCCCc
Confidence 1122111 0 0 0123333332211 1100111245543 48999999999999999999999999999999
Q ss_pred cccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCe
Q psy16434 600 LQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLM 679 (745)
Q Consensus 600 l~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl 679 (745)
++++|++|+++++|||++++++++++.+++++++++++++|++++++++++|+++|+||||++++|+|+|+|||.++||+
T Consensus 239 ~~ien~kIll~d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~I~~~al~~L~~~gI~ 318 (553)
T 3ko1_A 239 KRLENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVL 318 (553)
T ss_dssp SCCBSCEEEEECSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSCBCSHHHHHHHHHTCE
T ss_pred cccccceEEEecCcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEeccChHHHHHHHHHhcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 680 GVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 680 ~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
+++++++++|+|||++|||+++++++++.+++||+|+.|++. |+++|.+.+.|
T Consensus 319 ~v~~v~k~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~d~~~~i~g~ 373 (553)
T 3ko1_A 319 AVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGA 373 (553)
T ss_dssp EECCCCHHHHHHHHTTTTCCEESCGGGCCSSSSEECSEEECCCCSSSCCEEEESC
T ss_pred hhhhhhhhhHHHHHHhhCCeeecccccCChhhcchHHHHHHhhcCcceEEEeccC
Confidence 999999999999999999999999999999999999999996 78888766555
|
| >3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-32 Score=314.78 Aligned_cols=267 Identities=16% Similarity=0.177 Sum_probs=224.6
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH------H
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF------V 530 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I------P 530 (745)
+||.++++.++++.|++++|| |++++|+|+.+ ..+..++-+|. |..|.++++++++.|++.++.....+ .
T Consensus 69 ~hP~akll~e~a~~qd~e~GDGTTtvvVLA~eLL-~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~ 147 (546)
T 3p9d_F 69 QSPTAVLIARAAAAQDEITGDGTTTVVCLVGELL-RQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDR 147 (546)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH-HHHHHHTTTTBCHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSTTC
T ss_pred cCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhccccccccCH
Confidence 789999999999999999999 89999999988 77777888887 88999999999999999998764311 0
Q ss_pred HHHHhhccchhhHHHHHHHHHhhcCCccc--------------eeeecCCCcceeecccccccccccchhhHhhhhhhcc
Q psy16434 531 KTLAENTGVKSNEVISKLYSAHNEGKKTY--------------GFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAA 596 (745)
Q Consensus 531 r~LaeNAGld~~~vlsKL~~~h~~g~~~~--------------GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a 596 (745)
..|..-| .+++.+|+.+.+++.+..+ .+|++. ++++++.|+.+.|+.+++|++|++...+.
T Consensus 148 ~~L~~vA---~tsl~sKi~~~~~d~la~l~vdaV~~V~~~~~~~~dl~~--I~i~ki~Gg~~~ds~lv~G~v~dk~~~~~ 222 (546)
T 3p9d_F 148 EFLLQVA---RSSLLTKVDADLTEVLTPIVTDAVLSVYDAQADNLDLHM--VEIMQMQHLSPKDTTFIKGLVLDHGGRHP 222 (546)
T ss_dssp HHHHHHH---HHHTCSTTHHHHCSSHHHHHHHHHHHTHHHHHTTCCGGG--EEEECCCCSCTTTCCCCSSCEESCCCCSS
T ss_pred HHHHHHH---HHHhCCCcchhHHHHHHHHHHHhheEeecCCCCcccchh--eEEEEecCCCccccEEEeeEEEecccccc
Confidence 1222111 1111122222222222111 134433 48999999999999999999999999999
Q ss_pred hhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcC----------CcEEEeCCccc
Q psy16434 597 NTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTG----------ANVVVAGAKFG 666 (745)
Q Consensus 597 ~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~g----------vnVVl~~~~I~ 666 (745)
.|+++++||+|++++|||||+++++++++.++++++++.|.++|++++++++++|+.++ ++|||++++|+
T Consensus 223 ~m~~~~en~kIll~~~~Le~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~ 302 (546)
T 3p9d_F 223 DMPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGID 302 (546)
T ss_dssp SSCSSBCSCCCCEECCCSSSCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCCC
T ss_pred cCcceecCceEEEecCcccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceEEEecCcCc
Confidence 99999999999999999999999999999999999999999999999999999999876 34999999999
Q ss_pred HHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 667 DMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 667 d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
|+|+|||.++||+++|++++++|+|||++|||+++++++++.+++||+|+.|++. |+++|++...|
T Consensus 303 ~~Al~~L~~~gI~~vr~v~~~~leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~ 370 (546)
T 3p9d_F 303 PMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTEN 370 (546)
T ss_dssp HHHHHHHTTTTCEEECCCCHHHHHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSSCCCEECSSC
T ss_pred HHHHHHHHHCCCeeEecCCHHHHHHHHHHhCCEEecchhhCCHhHCCcccEEEEEEecCceEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999875 88888765554
|
| >3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-32 Score=311.11 Aligned_cols=286 Identities=16% Similarity=0.184 Sum_probs=231.3
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.++|..-...+.-.-+||.++++.++++.|++++|| |++++|+++.+ ..+..++-+|. |..|.++++.+++.|++
T Consensus 60 ~~ITnDG~TIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll-~~a~~lv~~GihP~~I~~G~~~A~~~a~~ 138 (550)
T 3p9d_G 60 TTISNDGATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELM-KEAKPFLEEGISSHLIMKGYRKAVSLAVE 138 (550)
T ss_dssp EEEECCHHHHTTTSCCCSHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHH-HTTSHHHHSSSCTTHHHHHHHHHHHHHHH
T ss_pred eEEECCHHHHHHHccCCCHHHHHHHHHHHHhhhhhCCCceehHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 4455543333333233789999999999999999999 88999999988 78888888897 88999999999999999
Q ss_pred HHHHHHHHH-------HHHHHhhcc--c------hhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccch
Q psy16434 521 TFKGITKVF-------VKTLAENTG--V------KSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTK 585 (745)
Q Consensus 521 vlk~~~~~I-------Pr~LaeNAG--l------d~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVk 585 (745)
.++.....+ ...|..-|. + ...+.+.++....-..-..-.+|++. ++|.++.|+++.|+.+++
T Consensus 139 ~L~~~s~~v~~~~~~~~~~L~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~dl~~--I~Vikv~Gg~~~ds~lv~ 216 (550)
T 3p9d_G 139 KINELAVDITSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLSLDRNDLDDKL--IGIKKIPGGAMEESLFIN 216 (550)
T ss_dssp HHHHSEECCCCC------CHHHHHHHHHHHTTTGGGHHHHHHHHHHHHHHCCSSSCCGGG--CCCCBCCSSCGGGCCCCS
T ss_pred HHHHhcccCCCCcchhHHHHHHHHHHhccCccccccHhHHHHHHHHHHHHhCccccCchh--eeEEEecCCCccceeEEe
Confidence 998643211 111211110 0 01122333322110000000144443 488999999999999999
Q ss_pred hhHhhhhhhcc---hhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeC
Q psy16434 586 MWALKYATSAA---NTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662 (745)
Q Consensus 586 G~vL~~A~e~a---~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~ 662 (745)
|++|++...+. .|+++++||+|++++++||++++++++++.+++++++++++++|++++++++++|++.|++||+++
T Consensus 217 G~~~dk~~~s~yf~~~~~~~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~ 296 (550)
T 3p9d_G 217 GVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSK 296 (550)
T ss_dssp SEEECCCSSCTTCSCSCSCCSSCCEEEECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEES
T ss_pred eEEEeccccccccccCcccccCceEEEeccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEC
Confidence 99999887765 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 663 ~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
++|+|+|+|||+++||++++++++++|+|||++|||+++++++++.++.||+|+.|+++ +.|+|.+-..|
T Consensus 297 ~~I~dla~~~L~~~gI~~v~~v~k~~lerIa~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~e~~~~~~g~ 368 (550)
T 3p9d_G 297 LPIGDLATQFFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGC 368 (550)
T ss_dssp SCCCHHHHHTTGGGTCEEEECCCTTHHHHHHHHTCCCCBSSGGGCCGGGCCCCSBCCCCCCSSSCCEEEBCC
T ss_pred CCccHHHHHHHHHcCCccccCcCHHHHHHHHHHhCCceecchhhCCHHHcCCceEEEEEEeCCeEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999996 88898766554
|
| >1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-31 Score=301.28 Aligned_cols=287 Identities=22% Similarity=0.242 Sum_probs=233.7
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.++|..-...+.-.-+||.++++.++++.|++++|| |++++|+++.+ ..+..++-+|. |..|.++++.+++.|++
T Consensus 58 ~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLA~~LL-~~a~~ll~~GihP~~I~~G~~~A~~~a~~ 136 (545)
T 1a6d_A 58 IIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELL-KQAETLLDQGVHPTVISNGYRLAVNEARK 136 (545)
T ss_dssp EEEECCHHHHHHHSCCCSHHHHHHHGGGGCTTTCSTTHHHHHHHHHHHHH-HHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEeCcHHHHHHhhhccchHHHHHHHHHHhcCCEECCChhHHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 4444433233332223789999999999999999999 89999999988 77777888887 88999999999999999
Q ss_pred HHHHHHHH-----HHHHHHhhc---cc--hhhHHHHHHHHHhhc--CCc---cceeeecCCCcceeecccccccccccch
Q psy16434 521 TFKGITKV-----FVKTLAENT---GV--KSNEVISKLYSAHNE--GKK---TYGFDINGENSSVIDAAEAGILDLYLTK 585 (745)
Q Consensus 521 vlk~~~~~-----IPr~LaeNA---Gl--d~~~vlsKL~~~h~~--g~~---~~GIDl~~~~ikI~dm~g~gI~Ds~lVk 585 (745)
.++..... .-..++..+ -. ...+.+.++....-. +.. ..-+|+ +.++|.++.|+++.|+.+++
T Consensus 137 ~L~~~s~~~~~~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~--~~I~V~k~~G~~~~ds~lv~ 214 (545)
T 1a6d_A 137 IIDEIAEKSTDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDT--ANIKVDKKNGGSVNDTQFIS 214 (545)
T ss_dssp HHHHHCEECCCHHHHHHHHHHHTTTSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCG--GGEEEEECCCSCSTTCEEES
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcccCCCccccc--ceEEEEEecCCCceeeEEEe
Confidence 99875411 001222211 00 112333333221100 000 011333 34589999999999999999
Q ss_pred hhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcc
Q psy16434 586 MWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKF 665 (745)
Q Consensus 586 G~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I 665 (745)
|++|++...+..|+++++|++|++++++||++++++++++.++++++++.+.++|+++++.++++|+++|++|||++++|
T Consensus 215 G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I 294 (545)
T 1a6d_A 215 GIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGI 294 (545)
T ss_dssp EEEESCCCSCTTSCSEEEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCB
T ss_pred eEEEeccCCCCCCcceecCCEEEEEecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCcccccc
Q psy16434 666 GDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTCK 733 (745)
Q Consensus 666 ~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~~ 733 (745)
+|+|+|||.++||++++++++++|+|||++|||+++++++++.+++||+|+.|++. |+++|++.+.|.
T Consensus 295 ~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~ 364 (545)
T 1a6d_A 295 DDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCK 364 (545)
T ss_dssp CHHHHHHHHHHTCEEECSCCHHHHHHHHHHHCCCEESSGGGCCGGGCEEEEEEEEEEETTEEEEEEEEES
T ss_pred cHHHHHHHHHCCeeEeccCCHHHHHHHHHHhCCeeecccccCCHHHCCCceEEEEEEecCceEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999996 789988766553
|
| >3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-30 Score=295.66 Aligned_cols=269 Identities=37% Similarity=0.499 Sum_probs=224.0
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHH--HHH----
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITK--VFV---- 530 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~--~IP---- 530 (745)
+||.++++.++++.|++++|| |++++|+++.+ ..+..++-+|. |..+.++++.+++.|++.++.... ..|
T Consensus 63 ~hP~Akll~e~a~~qd~~~GDGTTtvvVLA~~Ll-~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~~~~~~~~~~~~ 141 (512)
T 3iyg_Q 63 QHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALL-ELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDV 141 (512)
T ss_pred CCHHHHHHHHHHHHhhhhhCCChhHHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCH
Confidence 789999999999999999999 88999999988 77878888887 889999999999999999988632 111
Q ss_pred HHHHh---hc----cchhhHHHHHHHHHhhc--CCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcc
Q psy16434 531 KTLAE---NT----GVKSNEVISKLYSAHNE--GKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601 (745)
Q Consensus 531 r~Lae---NA----Gld~~~vlsKL~~~h~~--g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~ 601 (745)
..|.+ .+ .....+.+.++....-. +...--+|+.. +++.+++|+++.|+.+++|++|++...+ |+++
T Consensus 142 ~~l~~va~tsl~sK~~~~~~~i~~livdAv~~V~~~~~~i~v~~--I~i~k~~Ggs~~ds~lv~G~~~dk~~~~--~~~~ 217 (512)
T 3iyg_Q 142 DEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFPDSGHFNVDN--IRVCKILGSGVHSSSVLHGMVFKKETEG--DVTS 217 (512)
T ss_pred HHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHhccCCcccHhH--eeEeeccCCCcccceEEeeEEEecCcCC--CCcc
Confidence 12211 11 00012333333221100 00000145443 4899999999999999999999988754 9999
Q ss_pred cccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEE
Q psy16434 602 QTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGV 681 (745)
Q Consensus 602 IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~i 681 (745)
+++++++++++||++.+++.++++.++++++++++.++|++++++++++|+++|++||+++++|+++++|||.++||+++
T Consensus 218 ~~n~kI~ll~~~le~~~~e~k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~la~~~l~k~~I~av 297 (512)
T 3iyg_Q 218 VKDAKIAVYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLV 297 (512)
T ss_pred cccCceEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCcccccc
Q psy16434 682 RLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTCK 733 (745)
Q Consensus 682 r~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~~ 733 (745)
+++++.||+|||++|||+++++++++.+++||+|++|++. |+++|.+-..|+
T Consensus 298 ~~~~~~dle~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~~g~~~~~~~~~~~ 351 (512)
T 3iyg_Q 298 RLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEK 351 (512)
T ss_pred EeCCHHHHHHHHHHhCCEEecccccCCHHHCCcccEEEEEEeCCeEEEEEEccc
Confidence 9999999999999999999999999999999999999996 788886544443
|
| >3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-31 Score=303.83 Aligned_cols=272 Identities=19% Similarity=0.251 Sum_probs=229.6
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEE-EEcCC-chhhHHHHHHHHHHHHHHHHHHHHHHH----H
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATL-VIRGA-TENYMDDIERAVDDGVNTFKGITKVFV----K 531 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TI-IlrG~-t~~IldE~eral~DAL~vlk~~~~~IP----r 531 (745)
+||.++++.++++.|++++|| |++++|+|+.+ ..+..+ +-+|. |..|.++++.+++.|+..++.....+. .
T Consensus 71 ~hP~Akll~e~a~~qd~e~GDGTTtvvVLA~eLL-~~a~~l~l~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~e 149 (590)
T 3p9d_C 71 AHPAAKSMLELSRTQDEEVGDGTTTVIILAGEIL-AQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDVENDA 149 (590)
T ss_dssp CCHHHHTHHHHTTTHHHHCSSCHHHHHHHHHHHH-HHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHCCTTTTCCTH
T ss_pred CCHHHHHHHHHHHhhhhhhCCCccchHHHHHHHH-hhhHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhccccCCHH
Confidence 788999999999999999999 88999999988 778888 88897 889999999999999999987653111 1
Q ss_pred HHHhhcc--c------hhhHHHHHHHHHhhcC--C-c--------cceeeecCCCcceeecccccccccccchhhHhhhh
Q psy16434 532 TLAENTG--V------KSNEVISKLYSAHNEG--K-K--------TYGFDINGENSSVIDAAEAGILDLYLTKMWALKYA 592 (745)
Q Consensus 532 ~LaeNAG--l------d~~~vlsKL~~~h~~g--~-~--------~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A 592 (745)
.|..-|. + ...+.+.++....-.. . . .+.+|+.. +++|.+++|+++.|+.+++|++|++.
T Consensus 150 ~L~~vA~tslsSK~~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~~~vDl~~-~I~I~ki~Ggs~~ds~lv~Gmvfdk~ 228 (590)
T 3p9d_C 150 AMKKLIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKR-YVRVEKIPGGDVLDSRVLKGVLLNKD 228 (590)
T ss_dssp HHHHHHTTTSTTSTTGGGHHHHHHHHHHHHTTSTTCC-----------CCCSS-SSCEEEESSCCGGGCBCCSSEEECCC
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHHhcccccCccccccccccchhh-ceEEEEecCCCcccceeeeEEEEecc
Confidence 2222111 1 1234455554322110 0 0 11233332 35899999999999999999999999
Q ss_pred hhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHH
Q psy16434 593 TSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHY 672 (745)
Q Consensus 593 ~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~ 672 (745)
+.+..|+++++||+|++++||||++|+++++++.+++++++++++++|+++++++|++|++.||+|||++++|+|+|+||
T Consensus 229 ~~~~~m~~~~en~kIll~d~~Le~~K~e~~~~v~Is~~~~l~~il~~E~~~l~~~vekI~~~g~~vII~e~~I~d~Al~~ 308 (590)
T 3p9d_C 229 VVHPKMSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHY 308 (590)
T ss_dssp CSCTTSCSCEESCCEECCCCCCSCCCCTTTEECCBCSTTHHHHHHHHHHHHHHHHHHHHHTTCCSEECCSSCCCTHHHHH
T ss_pred cCCCCCcceeeeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcc-cCCceEe--cccccCcccccc
Q psy16434 673 LNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSF-CPAPPVQ--GRERDRPAQTCK 733 (745)
Q Consensus 673 L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~-c~~~~~~--~~e~~~~~~~~~ 733 (745)
|.++||++++++++++|+|||++|||+++++++++..++||+ |++|++. |.|+|++.+.|.
T Consensus 309 L~k~~I~av~~~~k~~le~ia~~TGa~iis~l~~~~~~~LG~~a~~v~~~~ig~d~~~~i~g~~ 372 (590)
T 3p9d_C 309 LLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCK 372 (590)
T ss_dssp HHHTTCCCCCCCCHHHHHHHHHHHTCCCCSCSTTCCTTSCBCCCSEEECCEETTEECEEECC--
T ss_pred HHhccceeeccCCHHHHHHHHHHhCCceeecccCCCHHHhCCcCCEEEEEEEcCcEEEEEeCCC
Confidence 999999999999999999999999999999999999999999 9999874 889998887774
|
| >3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-30 Score=295.92 Aligned_cols=287 Identities=16% Similarity=0.163 Sum_probs=233.4
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.++|..-...+.-.-+||.++++.++++.|++++|| |++++|+|+.+ ..+..++-+|. |..+.++++.+++.|++
T Consensus 55 ~~iTnDG~tIlk~i~v~hP~akll~e~a~~qd~e~GDGTTtvvVLA~~Ll-~~a~~li~~GihP~~I~~G~~~A~~~a~~ 133 (528)
T 3p9d_D 55 IIISNDGHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALL-GAAERLLNKGIHPTIIADSFQSAAKRSVD 133 (528)
T ss_dssp EEEECCHHHHHHHSCCCCTTHHHHHHHHHHHHHHTCSCSHHHHHHHHHHH-HHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEECCHHHHHHHcccCCHHHHHHHHHHHHhhhhhCCChhhHHHHHHHHH-HHHHHHHHCCCChHHHHHHHHHHHHHHHH
Confidence 4444433223332223789999999999999999999 88999999988 77777788887 88999999999999999
Q ss_pred HHHHHHHHH-------HHHHHhhcc---c--hhhHHHHHHHHHhhc--CCc-cceeeecCCCcceeecccccccccccch
Q psy16434 521 TFKGITKVF-------VKTLAENTG---V--KSNEVISKLYSAHNE--GKK-TYGFDINGENSSVIDAAEAGILDLYLTK 585 (745)
Q Consensus 521 vlk~~~~~I-------Pr~LaeNAG---l--d~~~vlsKL~~~h~~--g~~-~~GIDl~~~~ikI~dm~g~gI~Ds~lVk 585 (745)
.++.....+ -..++..+- . ...+.+.++....-. +.. .=-+|+.. +++.+++|+++.|+.+++
T Consensus 134 ~L~~~s~~v~~~~~e~l~~va~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~~i~v~~--I~I~k~~Gg~~~ds~lv~ 211 (528)
T 3p9d_D 134 ILLEMCHKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKNVDLND--IRLVKKVGGTIDDTEMID 211 (528)
T ss_dssp HHHTTCCCCCSCCHHHHHHHHHHHSCSSSCSTTHHHHHHHHHHHHHTTCCTTTTCCCGGG--SBCCCCCSSCSCCCEEES
T ss_pred HHHHhhCCCCCCCHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHhccccCCccceEE--EEEEEecCCCccceEEEe
Confidence 998654211 011222110 0 012344444322110 100 00244443 489999999999999999
Q ss_pred hhHhhhhhhcch-hhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCc
Q psy16434 586 MWALKYATSAAN-TILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAK 664 (745)
Q Consensus 586 G~vL~~A~e~a~-mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~ 664 (745)
|++|++...+.. |+++++|++|++++++|+++++++++++.++++++++++.++|++++..++++|++.|++|||++++
T Consensus 212 G~v~dk~~~~~~~m~~~ien~kIll~~~~le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~ 291 (528)
T 3p9d_D 212 GVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKS 291 (528)
T ss_dssp SCBCCCCCCCSSSCCSEESSEEEEEECCCSSCCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEEESSC
T ss_pred eeEEeecccCcccCcccccCceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999998887 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-----cHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCcccccc
Q psy16434 665 F-----GDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTCK 733 (745)
Q Consensus 665 I-----~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~~ 733 (745)
| +++|+|||.++||++++++++++|+|||++|||+++++++++.+++||+|+.|++. +.++|.+-+.|.
T Consensus 292 I~~~a~~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~ii~~~~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~ 367 (528)
T 3p9d_D 292 ILRDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIR 367 (528)
T ss_dssp SCTTSCSCHHHHHHTTTSCCEEECCCTHHHHHHHHHHTCCCCSCSTTCCSSSEEEESCEECCEETTEECCBCTTBC
T ss_pred cccccCCHHHHHHHHHcCcEEEEeCCHHHHHHHHHHHCCEEecccccCCHHHCCcccEEEEEEECCEEEEEEEccc
Confidence 9 99999999999999999999999999999999999999999999999999999985 788887666554
|
| >3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-31 Score=306.44 Aligned_cols=270 Identities=19% Similarity=0.244 Sum_probs=227.5
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHH-HHHHH------
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKG-ITKVF------ 529 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~-~~~~I------ 529 (745)
+||.++++.++++.|++++|| |++++|+++.+ ..+..++-+|. |..|.++++.+++.|++.++. ....+
T Consensus 76 ~hP~Akll~e~a~~qd~e~GDGTTtvvVLA~~LL-~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e 154 (559)
T 3p9d_A 76 QHPAGKILVELAQQQDREIGDGTTSVVIIASELL-KRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKE 154 (559)
T ss_dssp CSHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH-HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGSCC--CT
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHH
Confidence 789999999999999999999 89999999988 77777888887 889999999999999999998 43211
Q ss_pred -HHHHHhhcc---c--hhhHHHHHHHHHhhc--CC---c-cceeeecCCCcceeecccccccccccchhhHhhhhhhcch
Q psy16434 530 -VKTLAENTG---V--KSNEVISKLYSAHNE--GK---K-TYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAAN 597 (745)
Q Consensus 530 -Pr~LaeNAG---l--d~~~vlsKL~~~h~~--g~---~-~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~ 597 (745)
-..++..+- + ...+.+.+|....-. +. . .--+|+.. ++|.++.|+++.|+.+++|++|++...+..
T Consensus 155 ~L~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~~~~~i~l~~--I~I~k~~Ggs~~ds~lv~G~v~dk~~~~~~ 232 (559)
T 3p9d_A 155 TLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKA--VNVLKAHGKSATESLLVPGYALNCTVASQA 232 (559)
T ss_dssp THHHHHHHTTSSSGGGTTHHHHHHHHHHHHHHHCCEESSSCEECCTTC--CCEEEEESSCSSCCBCCSEECCCCCCSSTT
T ss_pred HHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcccccCCCCccchhH--eEEEEecCCCccceeEeccEEEeecccCCC
Confidence 012222110 0 012334343221100 10 0 01244443 599999999999999999999999999999
Q ss_pred hhcccc--cceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHH
Q psy16434 598 TILQQT--KAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNK 675 (745)
Q Consensus 598 mil~ID--n~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k 675 (745)
|+.+++ +++|++++++|+++++++++++.++++++++++.++|++++..++++|+++|++|||++++|+++|+|||.+
T Consensus 233 m~~~ie~~n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~I~~~al~~L~~ 312 (559)
T 3p9d_A 233 MPKRIAGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVE 312 (559)
T ss_dssp SCSEECSSSBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCCCGGGTHHHHH
T ss_pred cceeeccCCceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHH
Confidence 999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEeCCHHHHHHHHHHhCCeecccC------CCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 676 YGLMGVRLNSKFDLRRLCKAVNATALPRL------VSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 676 ~gIl~ir~v~k~dLeRIaraTGA~ivssl------d~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
+||++++++++++|+|||++|||++++++ +++.+++||+|+.|++. ++++|.+.+.|
T Consensus 313 ~~I~av~~~~k~~le~ia~~TGa~iis~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~ 377 (559)
T 3p9d_A 313 AKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGT 377 (559)
T ss_dssp TTCEEESSCCHHHHHHHHHHSSCCCBCCSCCSTTCCCCCTTTSCCEEEEEEEECSSCEEECEEEE
T ss_pred cCCceEccCCHHHHHHHHHHhCCEEEeccccccccccCCHhHCccceEEEEEEEcCceEEEEEcC
Confidence 99999999999999999999999999999 78899999999999985 88888776655
|
| >3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-31 Score=308.86 Aligned_cols=286 Identities=20% Similarity=0.226 Sum_probs=228.4
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.++|..-...+.-.-+||.++++.++++.|++++|| |++++|+|+.+ ..+..++-+|. |..|.++++.+++.|++
T Consensus 81 ~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvVLA~~LL-~~a~~li~~GihP~~I~~G~~~A~~~a~~ 159 (562)
T 3p9d_E 81 ITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALL-DQALELIQKGIHPIKIANGFDEAAKLAIS 159 (562)
T ss_dssp EEEESCHHHHHHHSCCCSHHHHHHHHHHHHHHHHTSSCTTHHHHHHHHHH-HHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHccCCCHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 4444433223332223789999999999999999999 88999999988 77777888897 88999999999999999
Q ss_pred HHHHHHHHHH--------HHHHhhc------cc--hhhHHHHHHHHHhh---cCCccceeeecCCCcceeeccccccccc
Q psy16434 521 TFKGITKVFV--------KTLAENT------GV--KSNEVISKLYSAHN---EGKKTYGFDINGENSSVIDAAEAGILDL 581 (745)
Q Consensus 521 vlk~~~~~IP--------r~LaeNA------Gl--d~~~vlsKL~~~h~---~g~~~~GIDl~~~~ikI~dm~g~gI~Ds 581 (745)
.|+.....+. ..|+.-| -. ...+.++++....- .....-.+|+. .++|.++.|+++.|+
T Consensus 160 ~L~~~s~~v~~~~~~~~~e~L~~vA~tSl~sK~i~~~~d~la~l~vdAV~~V~~~~~~~~d~~--~I~I~k~~Ggs~~ds 237 (562)
T 3p9d_E 160 KLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDRKDVDFD--LIKMQGRVGGSISDS 237 (562)
T ss_dssp HTTTTTSSSSBCCCSSCHHHHHHHHHHHHSSSTTTTTHHHHHHHHHHHHHTSSTTTCSCCCCC--CCEEEEESSSCGGGC
T ss_pred HHHHhccCcCCCcchhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHheeecccccCCCCcc--cEEEEEecCCChhhh
Confidence 9876432110 1122111 00 01233333322110 00000123443 359999999999999
Q ss_pred ccchhhHhhhhhhcchhhccc------ccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy16434 582 YLTKMWALKYATSAANTILQQ------TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTG 655 (745)
Q Consensus 582 ~lVkG~vL~~A~e~a~mil~I------Dn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~g 655 (745)
.+|+|++|++...+..|++++ .++++++++|||++.++++++++.+++++++++|.++|+++++.++++|++.|
T Consensus 238 ~lveGmv~dk~~~sp~m~~~~~~~~~~~~~kIall~~~le~~k~~~~~~~~Iss~~~~~~~~~~E~~~l~~~lekI~~~g 317 (562)
T 3p9d_E 238 KLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAG 317 (562)
T ss_dssp EEESSEEESSCCCTTSCCC-----TTCSSCEECEEESCCSSCCCSSCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceeeeEEEecCCCCCCcCcccccccccccceEEEecccccccccccCceEEECCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--c--ccccCcccc
Q psy16434 656 ANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--G--RERDRPAQT 731 (745)
Q Consensus 656 vnVVl~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~--~e~~~~~~~ 731 (745)
++|||++++|+|+|+|||.++||++++++++++|+|||++|||+++++++++.+++||+|+.|+++ | +++|++...
T Consensus 318 ~~vvI~~~~I~~~Al~~L~~~~I~~v~~v~k~~le~ia~~TGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~i~g 397 (562)
T 3p9d_E 318 ADVVICQWGFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQ 397 (562)
T ss_dssp CSCCEECSSCCSHHHHHHHTTTCCCEECCCTTTHHHHHHHHCCCEEESSSCCCTTSCEECSCEEEECCSSSSCCEEEECC
T ss_pred CcEEEEeCCCCHHHHHHHHHCCCEEEeccCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEeccCCceEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999996 4 477765443
Q ss_pred c
Q psy16434 732 C 732 (745)
Q Consensus 732 ~ 732 (745)
|
T Consensus 398 ~ 398 (562)
T 3p9d_E 398 S 398 (562)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-30 Score=296.59 Aligned_cols=269 Identities=16% Similarity=0.168 Sum_probs=221.8
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEc-CC-chhhHHHHHHHHHHHHHHHHHHHHHH------
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIR-GA-TENYMDDIERAVDDGVNTFKGITKVF------ 529 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlr-G~-t~~IldE~eral~DAL~vlk~~~~~I------ 529 (745)
+||.++++.++++.|++++|| |++++|+++.+ ..+..++-. |. |..+.++++.+++.|++.++.....+
T Consensus 70 ~hP~Akll~e~a~~qd~~~GDGTTtavVLA~~Ll-~ea~~lv~~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~ 148 (527)
T 3p9d_B 70 DNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELL-REAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTM 148 (527)
T ss_dssp CCHHHHHHHHHHHHHHHHTCSCTTTTTHHHHHHH-HHHHHHTC---CCHHHHHHHHHHHHHHHHHHHHHTCBCCCCCHHH
T ss_pred CCHHHHHHHHHHHHhHhhhCCcHhHHHHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCccCCCcchh
Confidence 789999999999999999999 89999999988 777777778 87 88999999999999999998643200
Q ss_pred -HHHHHhhccc--h------hhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhc
Q psy16434 530 -VKTLAENTGV--K------SNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600 (745)
Q Consensus 530 -Pr~LaeNAGl--d------~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil 600 (745)
...|++-|.. . ..+.+.+|....-. .+|-+.+.+.++|.++.|+.+.|+.+++|++|++...+.. ++
T Consensus 149 ~~~~l~~vA~tSl~sK~~~~~~~~i~~li~dAv~---~V~~~~~~~~I~V~k~~gg~~~ds~lv~G~~~dk~~~~~~-p~ 224 (527)
T 3p9d_B 149 FREDLIHIAKTTLSSKILSQDKDHFAELATNAIL---RLKGSTNLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQ-PK 224 (527)
T ss_dssp HHHHHHHHHHHHHTTSGGGGGHHHHHHHHHHHHH---TTCTTCCTTSSCCCBCCCSSSSCCCEESSCCCSCCCSSSC-CS
T ss_pred hHHHHHHHHHhccccCcccchHHHHHHHHHHHHH---HhcccCCcceEEEEEcCCCCccccEEEEeEEEecccCCCC-Ce
Confidence 1222221100 0 02333333322111 1111111123588888999999999999999998887775 88
Q ss_pred ccccceeeeeccCccccccc-ccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCe
Q psy16434 601 QQTKAKIAVYTCPVDIATTE-TKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLM 679 (745)
Q Consensus 601 ~IDn~kIlll~~~Le~~k~e-~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl 679 (745)
+++|++|++++|+||+++++ +++++.++++++++++.++|++++++++++|++.|++||+++++|+++|+|||.++||+
T Consensus 225 ~~~n~kIlll~~~le~~k~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~l~~I~~~g~~vvi~~~~I~~~al~~L~~~~i~ 304 (527)
T 3p9d_B 225 RIENAKILIANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGIN 304 (527)
T ss_dssp CCSSCEEEEECSCSSCCCCSSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCBEEESSCCCTTTHHHHHHHTCBC
T ss_pred eeecceEEEeccccccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHCCCE
Confidence 99999999999999999999 69999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCcccccc
Q psy16434 680 GVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTCK 733 (745)
Q Consensus 680 ~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~~ 733 (745)
+++++++.||+|||++|||+++++++++.+++||+|+.|++. |.|+|.+-..|.
T Consensus 305 av~~~~~~dle~ia~~tGa~iv~~~~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~ 360 (527)
T 3p9d_B 305 SIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCK 360 (527)
T ss_dssp CCCCCHHHHHHHHHHHTCCCCCSTTSCCTTSCEECSBCCBCCCSSSCCBCCBCSSC
T ss_pred EEecCCHHHHHHHHHHhCCEEecchhhCCHHHCCCCcEEEEEEecceEEEEEECCC
Confidence 999999999999999999999999999999999999999985 888988766553
|
| >1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.6e-20 Score=208.62 Aligned_cols=240 Identities=17% Similarity=0.145 Sum_probs=184.8
Q ss_pred CCC----CcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH--H
Q psy16434 460 TPP----AASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF--V 530 (745)
Q Consensus 460 ~~p----~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I--P 530 (745)
+|| .++++-++++.|++++|| |++++|+++.+ ..+..++-+|. |..|.++++.+++.|++.++.....+ .
T Consensus 62 ~hp~en~~Akll~e~a~~qd~e~GDGTTtvvVLA~~LL-~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~ 140 (543)
T 1we3_A 62 EDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIV-REGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVEDR 140 (543)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH-HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCSH
T ss_pred CChHHhHHHHHHHHHHHhhheecCCCcchHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCH
Confidence 778 999999999999999999 89999999988 77777888887 88999999999999999998765311 1
Q ss_pred HHHHhhccchh-hHHHHHHHHHhhcCCccceeeecCCCcceeeccccccccc-ccchhhHhhhhhhcch-------hhcc
Q psy16434 531 KTLAENTGVKS-NEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDL-YLTKMWALKYATSAAN-------TILQ 601 (745)
Q Consensus 531 r~LaeNAGld~-~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds-~lVkG~vL~~A~e~a~-------mil~ 601 (745)
..|.+-|.... .+.+.++....-. .+|-| +.+.+. .++++.|+ .+++|++|++...+.. |...
T Consensus 141 ~~l~~vA~iS~~~~~i~~li~dAv~---~V~~~---g~I~Ve--~G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m~~~ 212 (543)
T 1we3_A 141 KAIEEVATISANDPEVGKLIADAME---KVGKE---GIITVE--ESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAV 212 (543)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH---TTCTT---SEEEEE--ECSSSSCEEEEECSEEESCCBSSGGGCSBTTTTBCC
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHH---HhCcC---CcEEEe--cCCccccceEEEcCEEEecCccccccccCcccCcee
Confidence 12221111100 2334444322111 11111 212443 67888998 9999999998877664 6667
Q ss_pred cccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHH------
Q psy16434 602 QTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNK------ 675 (745)
Q Consensus 602 IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k------ 675 (745)
++||+|+++++++ ++++++ ..++++|++.|++|||++++|+++|++||.+
T Consensus 213 ~en~~Ill~d~~I-------------s~~~~l-----------~~~le~i~~~g~~lvii~~~I~~~Al~~L~~n~irg~ 268 (543)
T 1we3_A 213 LEDAFILIVEKKV-------------SNVREL-----------LPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGT 268 (543)
T ss_dssp EEEEEEEEESSCB-------------CCHHHH-----------HHHHHHHHTTTCCEEEEESCBCHHHHHHHHHHHHHTS
T ss_pred ecCceEEEECCCc-------------CCHHHH-----------HHHHHHHHhcCCCEEEEcCCccHHHHHHHHHhccccc
Confidence 9999999999964 455554 3568889999999999999999999999998
Q ss_pred cCCeEEE-----eCCHHHHHHHHHHhCCeeccc-----CCCCCCCCCcccCCceEecccccCcccccc
Q psy16434 676 YGLMGVR-----LNSKFDLRRLCKAVNATALPR-----LVSTYIKMPSFCPAPPVQGRERDRPAQTCK 733 (745)
Q Consensus 676 ~gIl~ir-----~v~k~dLeRIaraTGA~ivss-----ld~l~~~~LG~c~~~~~~~~e~~~~~~~~~ 733 (745)
.+|++++ ++++.+|+|||++|||+++++ ++++..++||+|+.|++ +++++++...|.
T Consensus 269 ~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~g~~l~~~~~~~LG~a~~v~~-~~~~~~~i~g~~ 335 (543)
T 1we3_A 269 LSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRI-TKDETTIVGGKG 335 (543)
T ss_dssp CCEEEEECSSSHHHHHHHHHHHHHHHCCCCBCTTTTCCGGGCCGGGCEEEEEEEE-CSSCEEEEEECC
T ss_pred eeEEEEeccchhhhhHHHHHHHHHHhCCceeeccccCCcccCCHHHCCCceEEEE-EcCEEEEEcCCC
Confidence 5678888 889999999999999999996 89999999999999987 467777766654
|
| >3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-19 Score=203.05 Aligned_cols=239 Identities=15% Similarity=0.124 Sum_probs=173.9
Q ss_pred CCCC----cccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH--H
Q psy16434 460 TPPA----ASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF--V 530 (745)
Q Consensus 460 ~~p~----a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I--P 530 (745)
+||. ++++.++++.|++++|| |++++|+++.+ ..+..++-.|. |..|.++++++++.|++.|+.....+ +
T Consensus 62 ~hp~~n~gAkll~e~a~~qd~e~GDGTTtvvVLAgeLL-~ea~~li~~GihP~~I~~G~~~A~~~a~e~L~~~s~~v~~~ 140 (546)
T 3rtk_A 62 EDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALV-REGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETK 140 (546)
T ss_dssp CCHHHHHHHHHHHHHHTSCC-------CHHHHHHHHHH-HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCSH
T ss_pred CChhhhHHHHHHHHHHHhhhhhhCCCcchHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCh
Confidence 6776 78999999999999999 88999999988 77777888888 88999999999999999998754311 1
Q ss_pred H---HHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcc-------hhhc
Q psy16434 531 K---TLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAA-------NTIL 600 (745)
Q Consensus 531 r---~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a-------~mil 600 (745)
. .++..+. . .+.+.++....- ..+|-| +.+++.+. .+...|+.+++|++|++...+. .|+.
T Consensus 141 e~L~~vA~iS~-~-~~~i~~liadAv---~~V~~d---gvI~Ve~~-~~~~~ds~lveGm~fdkg~~sp~~vt~~e~m~~ 211 (546)
T 3rtk_A 141 EQIAATAAISA-G-DQSIGDLIAEAM---DKVGNE---GVITVEES-NTFGLQLELTEGMRFDKGYISGYFVTDPERQEA 211 (546)
T ss_dssp HHHHHHHHHHH-T-CHHHHHHHHHHH---HHSCTT---SEEEEECC-SSSSCEEEEECEEEESCCBSSGGGCSBTTTTBE
T ss_pred HHHHhHeEEeC-C-chHHHHHHHHHH---HHhccC---CceEEEec-CCcccceEEeeeEEEcCCccCcccccCcccCee
Confidence 1 1221111 0 233344432211 011111 11244432 2445799999999999887765 6788
Q ss_pred ccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcC---
Q psy16434 601 QQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYG--- 677 (745)
Q Consensus 601 ~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~g--- 677 (745)
+++||+|++++++ +++++++. .++++|++.|++|||++++|+++|++||..++
T Consensus 212 ~len~kIll~d~k-------------Is~~~~l~-----------~~le~I~~~g~~lvIi~~~I~~~Al~~L~~n~lrg 267 (546)
T 3rtk_A 212 VLEDPYILLVSSK-------------VSTVKDLL-----------PLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRG 267 (546)
T ss_dssp EEESCEEEEBSSE-------------ECCSTTTH-----------HHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHHS
T ss_pred EecccEEEEECCc-------------cCCHHHHH-----------HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHhCCCC
Confidence 9999999999985 34555543 45889999999999999999999999999754
Q ss_pred ---CeEEEe-----CCHHHHHHHHHHhCCeecc-----cCCCCCCCCCcccCCceEecccccCcccccc
Q psy16434 678 ---LMGVRL-----NSKFDLRRLCKAVNATALP-----RLVSTYIKMPSFCPAPPVQGRERDRPAQTCK 733 (745)
Q Consensus 678 ---Il~ir~-----v~k~dLeRIaraTGA~ivs-----sld~l~~~~LG~c~~~~~~~~e~~~~~~~~~ 733 (745)
+++++. ..+++|+|||++|||++++ +++++..+.||+|++|++ +++++++.+.|.
T Consensus 268 ~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~i-~~d~~~~i~g~~ 335 (546)
T 3rtk_A 268 TFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVV-TKDETTIVEGAG 335 (546)
T ss_dssp SCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCSSSSCCSTTCCTTTSEEEEEEEE-CSSCEEEEEECS
T ss_pred ceEEEEeccccccccchhhHHHHHHHhCCEEeeccccCccccCCHhhCCeeEEEEE-cCCeEEEEcCCC
Confidence 455543 3488999999999999999 699999999999999986 777887766654
|
| >1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-19 Score=207.54 Aligned_cols=239 Identities=13% Similarity=0.112 Sum_probs=156.8
Q ss_pred CCC----CcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHHH--
Q psy16434 460 TPP----AASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVFV-- 530 (745)
Q Consensus 460 ~~p----~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~IP-- 530 (745)
+|| .++++-++++.|++++|| |++++|+++.+ ..+..++-+|. |..|.++++.+++.|++.|+.....+.
T Consensus 63 ~hp~en~~Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll-~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~ 141 (545)
T 1iok_A 63 SDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIV-REGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDS 141 (545)
T ss_dssp SSHHHHHHHHHHHHHHHHGGGGCSTHHHHHHHHHHHHH-HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCBCCCST
T ss_pred CChhhHHHHHHHHHHHHhhccccCCCcchHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCH
Confidence 678 999999999999999999 89999999988 77777888887 889999999999999999987553110
Q ss_pred ---HHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccccc-ccchhhHhhhhhhcch-------hh
Q psy16434 531 ---KTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDL-YLTKMWALKYATSAAN-------TI 599 (745)
Q Consensus 531 ---r~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds-~lVkG~vL~~A~e~a~-------mi 599 (745)
..++..+ ....+.+.++....- ..+|-| +.+++. .++++.|+ .+++|++|++...+.. |+
T Consensus 142 e~l~~va~iS-~~~~~~i~~li~dAv---~~V~~~---g~I~Ve--~G~~~~ds~~lveG~~~dkg~~~p~~vt~~~~m~ 212 (545)
T 1iok_A 142 SEVAQVGTIS-ANGESFIGQQIAEAM---QRVGNE---GVITVE--ENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMI 212 (545)
T ss_dssp TTTTHHHHHT-TTTCHHHHHHHHHHH---HHHCTT---SCCCCE--ECSSSCCEEEEECCEECSCCCSCGGGCCCSSSSC
T ss_pred HHHHHHHHhh-cCCchhHHHHHHHHH---HHhccC---CeEEEE--eCCccccceEEEecEEEecCccccccccCcccCc
Confidence 1112111 111223333322110 011111 223444 67889999 9999999998877654 66
Q ss_pred cccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHc---
Q psy16434 600 LQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKY--- 676 (745)
Q Consensus 600 l~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~--- 676 (745)
..++||+|++++++++ +++++ ..++++|++.|++|||++++|+++|+|||.++
T Consensus 213 ~~~en~~Ill~d~~I~-------------~~~~l-----------~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~ir 268 (545)
T 1iok_A 213 AELEDAYILLHEKKLS-------------SLQPM-----------VPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLR 268 (545)
T ss_dssp EEEEEEEEEECSSCBC-------------CCCC----------------------CCCCEEEESCBC-------------
T ss_pred eeecCCeEEEEcCCcC-------------CHHHH-----------HHHHHHHHhcCCCEEEECCCcCHHHHHHHHHcccc
Confidence 6799999999999864 23332 35688899999999999999999999999995
Q ss_pred ---CCeEEE-----eCCHHHHHHHHHHhCCeeccc-----CCCCCCCCCcccCCceEecccccCcccccc
Q psy16434 677 ---GLMGVR-----LNSKFDLRRLCKAVNATALPR-----LVSTYIKMPSFCPAPPVQGRERDRPAQTCK 733 (745)
Q Consensus 677 ---gIl~ir-----~v~k~dLeRIaraTGA~ivss-----ld~l~~~~LG~c~~~~~~~~e~~~~~~~~~ 733 (745)
+|++++ ++++.+|+|||++|||+++++ ++++.+++||+|+.|++ ++|+|++...|.
T Consensus 269 g~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~~~~l~~~~~~~LG~a~~v~~-~~~~~~~i~g~~ 337 (545)
T 1iok_A 269 GGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSI-NKDNTTIVDGAG 337 (545)
T ss_dssp ----CEEEECSCCTTHHHHHHHHHHHHHTC---------------CTTSEEEEEEEE-CSSCEEEESCCC
T ss_pred ccceeEEEecchhhhccHHHHHHHHHhcCCeeecccccCCcccCCHHHcCcCcEEEE-ecCEEEEEeCCC
Confidence 567887 999999999999999999997 99999999999999988 467887776664
|
| >1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... | Back alignment and structure |
|---|
Probab=99.70 E-value=4.1e-19 Score=203.39 Aligned_cols=240 Identities=16% Similarity=0.151 Sum_probs=184.1
Q ss_pred CCC----CcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH--H
Q psy16434 460 TPP----AASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF--V 530 (745)
Q Consensus 460 ~~p----~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I--P 530 (745)
+|| .++++-++++.|++++|| |++++|+++.+ ..+..++-+|. |..+.++++.+++.|++.|+.....+ .
T Consensus 62 ~hp~en~~Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll-~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~ 140 (547)
T 1kp8_A 62 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAII-TEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDS 140 (547)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH-HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCCCSH
T ss_pred cChhhhHHHHHHHHHHHhhccccCCCcchhHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCH
Confidence 678 999999999999999999 89999999988 77777888887 88999999999999999998765311 0
Q ss_pred HHHHhhcc--chhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccccc-ccchhhHhhhhhhcch-------hhc
Q psy16434 531 KTLAENTG--VKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDL-YLTKMWALKYATSAAN-------TIL 600 (745)
Q Consensus 531 r~LaeNAG--ld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds-~lVkG~vL~~A~e~a~-------mil 600 (745)
..|.+-|. ....+.+.++....- ..+|-| +.+++. .++++.|+ .+++|++|++...+.. |+.
T Consensus 141 e~l~~vA~iS~~~~~~i~~liadAv---~~V~~d---g~I~Ve--~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~ 212 (547)
T 1kp8_A 141 KAIAQVGTISANSDETVGKLIAEAM---DKVGKE---GVITVE--DGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAV 212 (547)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHH---HHHCTT---SEEEEE--CCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBE
T ss_pred HHHHHHHHHhccchhHHHHHHHHHH---HHhCcC---CcEEEE--eCCccccccEEEecEEEecCccccccccCcccCce
Confidence 12221111 111233333322110 011111 212443 67889999 9999999998877653 677
Q ss_pred ccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHc----
Q psy16434 601 QQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKY---- 676 (745)
Q Consensus 601 ~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~---- 676 (745)
.++||+|+++++++ ++++++ ..++++|++.|++|||++++|+++|+|||.++
T Consensus 213 ~lenp~Ill~d~~I-------------s~~~~l-----------~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg 268 (547)
T 1kp8_A 213 ELESPFILLADKKI-------------SNIREM-----------LPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRG 268 (547)
T ss_dssp EEESCEEECEESEE-------------CCGGGT-----------HHHHHHHHGGGCCEEEEESEECHHHHHHHHHHGGGT
T ss_pred EecCceEEEEcCcC-------------CCHHHH-----------HHHHHHHHhcCCCEEEECCCcCHHHHHHHHhccccc
Confidence 79999999999964 344443 35688899999999999999999999999995
Q ss_pred --CCeEEE-----eCCHHHHHHHHHHhCCeeccc-----CCCCCCCCCcccCCceEecccccCcccccc
Q psy16434 677 --GLMGVR-----LNSKFDLRRLCKAVNATALPR-----LVSTYIKMPSFCPAPPVQGRERDRPAQTCK 733 (745)
Q Consensus 677 --gIl~ir-----~v~k~dLeRIaraTGA~ivss-----ld~l~~~~LG~c~~~~~~~~e~~~~~~~~~ 733 (745)
+|++++ ++++.+|+|||++|||+++++ ++++..++||+|+.|++ ++++|++..-|.
T Consensus 269 ~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a~~v~~-~~~~~~~i~g~~ 336 (547)
T 1kp8_A 269 IVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVI-NKDTTTIIDGVG 336 (547)
T ss_dssp SSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEEEEEEEE-CSSCEEEEEECC
T ss_pred ceeEEEEeccccccccHHHHHHHHHHhCCeEecccccCCcccCCHHHCCceeEEEE-ccceEEEEcCCC
Confidence 567888 899999999999999999996 99999999999999988 467777766654
|
| >1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3.7e-12 Score=126.04 Aligned_cols=89 Identities=15% Similarity=0.306 Sum_probs=74.3
Q ss_pred cccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC-----------------------------------
Q psy16434 417 LFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK----------------------------------- 459 (745)
Q Consensus 417 ~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k----------------------------------- 459 (745)
++||++++|++|++++.+ ||++++||||++++++||+++++.+
T Consensus 1 ~~dS~lv~Gvvl~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~n 80 (178)
T 1gml_A 1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPD 80 (178)
T ss_dssp --CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEEEEEeccccCCCCCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 368999999999999987 5999999999999999999987642
Q ss_pred -----------------------------------------------CCCCcccccc-cccEEEEEECCeeEEEEEeccc
Q psy16434 460 -----------------------------------------------TPPAASELGY-ADSVAVDELGDTAVVVFKLEAA 491 (745)
Q Consensus 460 -----------------------------------------------~~p~a~~LG~-a~~vq~~eiGdtsvti~~g~~l 491 (745)
++++++.||+ |+.+++.++|++++++|+||+.
T Consensus 81 VVl~~k~I~d~a~~~l~k~gI~~vr~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~~v~~~~ig~~~~~~~~gc~~ 160 (178)
T 1gml_A 81 VVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKD 160 (178)
T ss_dssp EEEESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEEESS
T ss_pred EEEECCcccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCeEeCChhhCChhhhCCcccEEEEEEECCeEEEEEECCCC
Confidence 7788899999 9999999999999999999987
Q ss_pred ccceeEEEEcCCchh
Q psy16434 492 ESRIATLVIRGATEN 506 (745)
Q Consensus 492 ~~~a~TIIlrG~t~~ 506 (745)
++++||++||++..
T Consensus 161 -~~~~TIllRG~~~~ 174 (178)
T 1gml_A 161 -PKACTILLRGASHH 174 (178)
T ss_dssp -TTSCEEEEEC----
T ss_pred -CCEEEEEEECCCcc
Confidence 89999999998643
|
| >1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A | Back alignment and structure |
|---|
Probab=98.59 E-value=3.3e-08 Score=95.97 Aligned_cols=69 Identities=23% Similarity=0.268 Sum_probs=62.5
Q ss_pred EeeEEEeecccC--CceeeeCceEEEeccCCCccccccC-----------------------------------------
Q psy16434 423 VQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK----------------------------------------- 459 (745)
Q Consensus 423 v~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k----------------------------------------- 459 (745)
++|++|++++.+ ||++++||||++++++||+++++.+
T Consensus 1 i~Gvv~~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k 80 (159)
T 1ass_A 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQK 80 (159)
T ss_dssp CCCEEESCCCSCTTSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEESS
T ss_pred CceEEEecccCCCCCCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEEECC
Confidence 579999999988 7999999999999999999887531
Q ss_pred -----------------------------------------CCCCcccccccccEEEEEECCeeEEEEEeccc
Q psy16434 460 -----------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAA 491 (745)
Q Consensus 460 -----------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l 491 (745)
++++++.||+|+.+++.++|++++++|+||+.
T Consensus 81 ~I~d~a~~~l~k~gI~~v~~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~v~e~~ig~~~~~~~~g~~~ 153 (159)
T 1ass_A 81 GIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKN 153 (159)
T ss_dssp CBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEESCC-
T ss_pred ccCHHHHHHHHHCCCEEEccCCHHHHHHHHHHhCCeeeCccccCCcccCccceEEEEEEECCeEEEEEECCCC
Confidence 78899999999999999999999999999975
|
| >3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0072 Score=59.81 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=30.2
Q ss_pred ceeEeeEEEeecccCC---------ceeeeCceEEEeccCCCcccc
Q psy16434 420 SEIVQGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIATT 456 (745)
Q Consensus 420 S~lv~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k~ 456 (745)
.++++||.|++||.++ ...++||+||+++.+++..+.
T Consensus 2 levvEGmqfDrGYiSpyfvtd~~~m~~~le~p~ILitdkKIs~i~~ 47 (194)
T 3m6c_A 2 LEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPD 47 (194)
T ss_dssp CCCCSSEEESCCBSCGGGCSBTTTTBEEEEEEEEEEBSSEECCHHH
T ss_pred eEEEeeeEccCcccCceeeeccCCcEEEEecceEEEEcCccCCHHH
Confidence 4689999999999764 567999999999988775443
|
| >3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A | Back alignment and structure |
|---|
Probab=93.83 E-value=0.061 Score=53.41 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=26.3
Q ss_pred eeEEEeecccCC---------ceeeeCceEEEeccCCCccc
Q psy16434 424 QGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIAT 455 (745)
Q Consensus 424 ~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k 455 (745)
+||.||++|.++ ...++||+||+++.+++..+
T Consensus 13 ~~~qfDrGYiSPYfvtd~e~m~~~le~p~ILitdkKIs~i~ 53 (201)
T 3osx_A 13 EGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKISNIR 53 (201)
T ss_dssp CCEEESCCBSCGGGCSBTTTTBEEEESCEEEEEEEEECCHH
T ss_pred cccEecCccCChheeecccCCEEEecCCeEEEEcCccCCHH
Confidence 699999999774 55799999999998776444
|
| >1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 | Back alignment and structure |
|---|
Probab=92.85 E-value=0.036 Score=52.48 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=25.6
Q ss_pred eEEEeecccCC---------ceeeeCceEEEeccCCCccc
Q psy16434 425 GMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIAT 455 (745)
Q Consensus 425 G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k 455 (745)
||.|+++|.++ ...++||+||+++.+++..+
T Consensus 1 GmqfDrGYlSpYfvtd~e~m~~~le~p~ILitdkKIs~i~ 40 (145)
T 1srv_A 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVR 40 (145)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEECCHH
T ss_pred CccccCCccCceeecCccccEEEeeccEEEEecccccCHH
Confidence 89999999763 56789999999998877544
|
| >3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.66 E-value=0.69 Score=45.74 Aligned_cols=102 Identities=18% Similarity=0.100 Sum_probs=75.9
Q ss_pred cchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHH
Q psy16434 595 AANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLN 674 (745)
Q Consensus 595 ~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~ 674 (745)
...|.-.++||.|++.+-. +++..++.++++ ++.+.|--+++.-..|+..|+.-|.
T Consensus 23 ~~~m~~~le~p~ILitdkK-------------Is~i~~ilP~LE-----------~~~~~~kpLlIIAedvegeaLatLv 78 (194)
T 3m6c_A 23 FDNQQAVLEDALILLHQDK-------------ISSLPDLLPLLE-----------KVAGTGKPLLIVAEDVEGEALATLV 78 (194)
T ss_dssp TTTTBEEEEEEEEEEBSSE-------------ECCHHHHHHHHH-----------HHHHHTCCEEEEESEECHHHHHHHH
T ss_pred cCCcEEEEecceEEEEcCc-------------cCCHHHHHHHHH-----------HHHHhCCCeEEEecccccchhhhhh
Confidence 4456677889999987644 467777777665 3445565577777799999998664
Q ss_pred H------cCCeEEEeCC-----HHHHHHHHHHhCCeecc-----cCCCCCCCCCcccCCceE
Q psy16434 675 K------YGLMGVRLNS-----KFDLRRLCKAVNATALP-----RLVSTYIKMPSFCPAPPV 720 (745)
Q Consensus 675 k------~gIl~ir~v~-----k~dLeRIaraTGA~ivs-----sld~l~~~~LG~c~~~~~ 720 (745)
- .++.|++-.. +.-|+-||-.|||++++ ++++...+.||+|+++.+
T Consensus 79 vNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~v 140 (194)
T 3m6c_A 79 VNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARRVVV 140 (194)
T ss_dssp HHHHHTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEE
T ss_pred hhhccceEEEEEEECCCCchhhhhhhHhHHHhcCCeEEeccCCcccccCCHHHCCCccEEEE
Confidence 3 3455666654 56789999999999987 445677789999999988
|
| >1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 | Back alignment and structure |
|---|
Probab=91.37 E-value=0.58 Score=44.26 Aligned_cols=103 Identities=15% Similarity=0.146 Sum_probs=77.0
Q ss_pred cchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHH
Q psy16434 595 AANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLN 674 (745)
Q Consensus 595 ~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~ 674 (745)
...|.-.++||.|++.+-. +++..++.++++ ++++.|--+++.-..|+..|+.-|.
T Consensus 17 ~e~m~~~le~p~ILitdkK-------------Is~i~~llP~LE-----------~v~~~~~pLlIIAedvegeaLatLv 72 (145)
T 1srv_A 17 PETMEAVLEDAFILIVEKK-------------VSNVRELLPILE-----------QVAQTGKPLLIIAEDVEGEALATLV 72 (145)
T ss_dssp TTTTBEEEEEEEEEEESSE-------------ECCHHHHHHHHH-----------HHHTTTCCEEEEESEECHHHHHHHH
T ss_pred ccccEEEeeccEEEEeccc-------------ccCHHHHHHHHH-----------HHHHHCCCEEEEecccchhhhhhhh
Confidence 4567777889999997644 567888887765 4566776677777899999998775
Q ss_pred H------cCCeEEEeC-----CHHHHHHHHHHhCCeecccC-----CCCCCCCCcccCCceEe
Q psy16434 675 K------YGLMGVRLN-----SKFDLRRLCKAVNATALPRL-----VSTYIKMPSFCPAPPVQ 721 (745)
Q Consensus 675 k------~gIl~ir~v-----~k~dLeRIaraTGA~ivssl-----d~l~~~~LG~c~~~~~~ 721 (745)
- .++.|++-. .+.-|+-||-.|||++++.- ++...+.||+|+++.+.
T Consensus 73 vNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~vt 135 (145)
T 1srv_A 73 VNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRIT 135 (145)
T ss_dssp HHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEEC
T ss_pred hhhhcccceEEEEeCCCcchhhHHHHHHHHHHhCCEEEccccCCccccCCHhHCCccCEEEEc
Confidence 4 344556655 36688999999999999653 34566789999999883
|
| >3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A | Back alignment and structure |
|---|
Probab=91.11 E-value=0.7 Score=45.88 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=76.4
Q ss_pred cchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHH
Q psy16434 595 AANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLN 674 (745)
Q Consensus 595 ~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~ 674 (745)
...|.-.++||.|++.+-. ++++.++.++++ ++.+.|--+++.-..|+..|+.-|.
T Consensus 30 ~e~m~~~le~p~ILitdkK-------------Is~i~~ilP~LE-----------~v~~~~rpLlIIAEDvegEALatLv 85 (201)
T 3osx_A 30 PESGSVELENPYILLVDKK-------------ISNIRELLPVLE-----------GVAKASKPLVIIAEDVEGEALATLV 85 (201)
T ss_dssp TTTTBEEEESCEEEEEEEE-------------ECCHHHHHHHHH-----------HHHTSSCCEEEEEEEECHHHHHHHH
T ss_pred ccCCEEEecCCeEEEEcCc-------------cCCHHHHHHHHH-----------HHHHhCCCeEEEeccccchhhhHHH
Confidence 4456677889999997644 467777777655 4556676677777799999998664
Q ss_pred H------cCCeEEEeCC-----HHHHHHHHHHhCCeeccc-----CCCCCCCCCcccCCceE
Q psy16434 675 K------YGLMGVRLNS-----KFDLRRLCKAVNATALPR-----LVSTYIKMPSFCPAPPV 720 (745)
Q Consensus 675 k------~gIl~ir~v~-----k~dLeRIaraTGA~ivss-----ld~l~~~~LG~c~~~~~ 720 (745)
- ..+.|++-.. +.-|+-||-.|||++++. +++...+.||+|+++.+
T Consensus 86 vNklrg~l~v~AVKAPgFGdrRk~~L~DIAilTGg~visee~g~~Le~~~~~~LG~a~~V~v 147 (201)
T 3osx_A 86 VNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELEKATLEDLGQAKRVVI 147 (201)
T ss_dssp HHHHHTSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEE
T ss_pred HhhccceEEEEEEeCCCCccchhhhhHhHHHHhCCEEEecccCCccccCCHhhCCCccEEEE
Confidence 4 3455666665 556899999999998864 34567788999999988
|
| >1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=90.77 E-value=0.075 Score=42.85 Aligned_cols=46 Identities=22% Similarity=0.572 Sum_probs=34.7
Q ss_pred eccceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccce
Q psy16434 37 TRNQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKFR 95 (745)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (745)
+...+|+|.+|... |-....-.+|+..|+.+.| |.|..||..|..+
T Consensus 10 ~~~k~~~C~~C~k~--f~~~~~L~~H~~~h~~~~~-----------~~C~~C~~~f~~~ 55 (72)
T 1x6e_A 10 SGEKPYGCVECGKA--FSRSSILVQHQRVHTGEKP-----------YKCLECGKAFSQN 55 (72)
T ss_dssp TTCCCEECSSSCCE--ESSHHHHHHHHHGGGCSCC-----------EECSSSCCEESSH
T ss_pred CCCCCccCCCCCCc--cCCHHHHHHHHHhcCCCCC-----------eECCCCCcccCCH
Confidence 45678999999764 4455556789999886654 8899999887643
|
| >1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=90.60 E-value=0.078 Score=42.42 Aligned_cols=45 Identities=27% Similarity=0.424 Sum_probs=33.3
Q ss_pred ccceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccce
Q psy16434 38 RNQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKFR 95 (745)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (745)
...+|+|.+|... |-....-.+|+..|+-+.| |.|+.||..|..+
T Consensus 6 ~~~~~~C~~C~k~--f~~~~~L~~H~~~H~~~~~-----------~~C~~C~~~f~~~ 50 (70)
T 1x5w_A 6 SGHPEKCSECSYS--CSSKAALRIHERIHCTDRP-----------FKCNYCSFDTKQP 50 (70)
T ss_dssp CCCSEECSSSSCE--ESSHHHHHHHHGGGCCSCS-----------EECSSSSCEESSH
T ss_pred CCCCeECCCCCcc--cCCHHHHHHHHHHcCCCCC-----------EeCCCCCCccCCH
Confidence 3578999999764 4445556789988876544 7899999887643
|
| >2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 | Back alignment and structure |
|---|
Probab=89.50 E-value=0.12 Score=38.15 Aligned_cols=40 Identities=20% Similarity=0.422 Sum_probs=30.7
Q ss_pred ccceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccC
Q psy16434 38 RNQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGN 90 (745)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (745)
...+|+|.+|... |.....-.+|+..|+-+.| |.|+.||+
T Consensus 9 ~~k~~~C~~C~k~--f~~~~~L~~H~~~H~~~k~-----------~~C~~C~k 48 (48)
T 2epr_A 9 TRKQVACEICGKI--FRDVYHLNRHKLSHSGEKP-----------YSSGPSSG 48 (48)
T ss_dssp CCCSEEETTTTEE--ESSHHHHHHHGGGSCSCCC-----------CCSCCCCC
T ss_pred CCcCeeCCCCCcc--cCCHHHHHHHHHhcCCCCC-----------ccCCCCCC
Confidence 4578999999653 6666667789988876654 78999985
|
| >3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.00 E-value=0.074 Score=40.46 Aligned_cols=43 Identities=19% Similarity=0.426 Sum_probs=31.3
Q ss_pred cceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccc
Q psy16434 39 NQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKF 94 (745)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (745)
..+|+|.+|+.. |.....-.+|+..|+.+.| |.|..||..|..
T Consensus 2 ~~~~~C~~C~~~--f~~~~~l~~H~~~h~~~~~-----------~~C~~C~~~f~~ 44 (57)
T 3uk3_C 2 SSSRECSYCGKF--FRSNYYLNIHLRTHTGEKP-----------YKCEFCEYAAAQ 44 (57)
T ss_dssp ---CBCTTTCCB--CSCHHHHHHHHHHHHCCCC-----------EECSSSSCEESS
T ss_pred CCCccCCCCcch--hCChHHHHHHHHHcCCCCC-----------cCCCCCcchhCC
Confidence 358999999754 5555666789999987654 789999987754
|
| >2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 | Back alignment and structure |
|---|
Probab=88.35 E-value=0.18 Score=38.36 Aligned_cols=43 Identities=19% Similarity=0.393 Sum_probs=31.1
Q ss_pred ccceeeEeeecCcchhhhhhhhhhhhh-hccCCCCCCCceEEeecchhhccccCccc
Q psy16434 38 RNQTYQCLVCKNKTLFHDLAEGARHVE-RHHWDQPDKNSLFVISDRFLCNLCGNEYK 93 (745)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (745)
...+|+|.+|... |.....-.+|+. .|+.+.| |.|..||..|.
T Consensus 9 ~~k~~~C~~C~k~--f~~~~~L~~H~~~~H~~~k~-----------~~C~~C~k~F~ 52 (54)
T 2eps_A 9 VGKPYICQSCGKG--FSRPDHLNGHIKQVHTSERP-----------HKCQVWVSGPS 52 (54)
T ss_dssp SSCCEECSSSCCE--ESSHHHHHHHHHHTSCCCCC-----------CCSSSSCCSSC
T ss_pred CCCCeECCCCCcc--cCCHHHHHHHHHHhcCCCCC-----------ccCCCCCCCCC
Confidence 4568999999764 555555678887 6765544 78999998763
|
| >2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=88.04 E-value=0.16 Score=39.79 Aligned_cols=51 Identities=24% Similarity=0.466 Sum_probs=35.2
Q ss_pred eeeeeccceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccc
Q psy16434 33 EKYFTRNQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKF 94 (745)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (745)
+.--+...+|+|..|+.. |-....-.+|+..||.... ..|.|+.||..|..
T Consensus 2 ~~~h~~~k~~~C~~C~k~--f~~~~~l~~H~~~~H~~~~---------~~~~C~~C~k~f~~ 52 (66)
T 2drp_A 2 EFTKEGEHTYRCKVCSRV--YTHISNFCRHYVTSHKRNV---------KVYPCPFCFKEFTR 52 (66)
T ss_dssp -CEEEETTEEECTTTCCE--ESSHHHHHHHHHHHSSSSC---------CCEECTTTCCEESC
T ss_pred ccccCCCcceECCCCcch--hCCHHHHHHHHHHHcCCCC---------cCeECCCCCCccCC
Confidence 344566789999999854 5555666789988663211 23899999988754
|
| >2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.93 E-value=0.11 Score=41.92 Aligned_cols=44 Identities=27% Similarity=0.692 Sum_probs=32.9
Q ss_pred cceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccce
Q psy16434 39 NQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKFR 95 (745)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (745)
..+|+|..|+.. |-....-.+|+..|+.+.| |.|+.||..|..+
T Consensus 15 ~~~~~C~~C~k~--f~~~~~l~~H~~~H~~~~~-----------~~C~~C~k~f~~~ 58 (74)
T 2lce_A 15 DKPYKCDRCQAS--FRYKGNLASHKTVHTGEKP-----------YRCNICGAQFNRP 58 (74)
T ss_dssp CCSBCCTTSSCC--BSCHHHHHHHHHHHCCCCS-----------EECTTTCCEESCH
T ss_pred CCCeECCCCCce--eCCHHHHHHHHHHcCCCCC-----------EECCCCCchhCCH
Confidence 568999999864 4444555789988876543 8899999887653
|
| >2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=87.92 E-value=0.12 Score=39.83 Aligned_cols=43 Identities=28% Similarity=0.709 Sum_probs=31.8
Q ss_pred ceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccce
Q psy16434 40 QTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKFR 95 (745)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (745)
.+|+|..|+.. |-....-.+|+..|+.+.| |.|+.||..|.-+
T Consensus 1 k~~~C~~C~~~--f~~~~~l~~H~~~h~~~~~-----------~~C~~C~~~f~~~ 43 (60)
T 2adr_A 1 RSFVCEVCTRA--FARQEHLKRHYRSHTNEKP-----------YPCGLCNRAFTRR 43 (60)
T ss_dssp CCBCCTTTCCC--BSCHHHHHHHHHTTTSSCS-----------EECTTTCCEESSH
T ss_pred CcCcCCCCccc--cCCHHHHHHHHHHhCCCCC-----------ccCCCCCCccCCH
Confidence 37999999764 5555566789988876543 7899999877543
|
| >1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A | Back alignment and structure |
|---|
Probab=87.54 E-value=0.13 Score=39.06 Aligned_cols=42 Identities=21% Similarity=0.542 Sum_probs=31.3
Q ss_pred eeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccce
Q psy16434 41 TYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKFR 95 (745)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (745)
+|+|..|+.. |-....-.+|+..|+.+.| |.|+.||..|..+
T Consensus 1 p~~C~~C~~~--f~~~~~l~~H~~~h~~~~~-----------~~C~~C~~~f~~~ 42 (57)
T 1bbo_A 1 KYICEECGIR--XKKPSMLKKHIRTHTDVRP-----------YHCTYCNFSFKTK 42 (57)
T ss_dssp CCBCTTTCCB--CSSHHHHHHHHHHTSSCCC-----------EECSSSSCEESSH
T ss_pred CCcCCCCcCc--CCCHHHHHHHHHhcCCCCC-----------ccCCCCCchhcCH
Confidence 5899999754 4455556789988886654 8899999877543
|
| >2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=85.83 E-value=0.19 Score=40.91 Aligned_cols=45 Identities=24% Similarity=0.682 Sum_probs=33.3
Q ss_pred ccceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccce
Q psy16434 38 RNQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKFR 95 (745)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (745)
...+|+|.+|+.. |.....-.+|+..|+.+.| |.|+.||..|..+
T Consensus 15 ~~~~~~C~~C~~~--f~~~~~l~~H~~~h~~~~~-----------~~C~~C~~~f~~~ 59 (77)
T 2cot_A 15 ERRRYKCDECGKS--FSHSSDLSKHRRTHTGEKP-----------YKCDECGKAFIQR 59 (77)
T ss_dssp CSCSSBCSSSCCB--CSCHHHHHHHHTTTCCSCS-----------EECSSSCCEESSH
T ss_pred CCCCEECCCCCcc--cCCHHHHHHHHHHcCCCcC-----------eeCCCCCCccCCH
Confidence 4578999999854 4445556789888876543 8899999887654
|
| >2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=85.56 E-value=0.3 Score=41.98 Aligned_cols=44 Identities=25% Similarity=0.597 Sum_probs=29.5
Q ss_pred ccceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccc
Q psy16434 38 RNQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKF 94 (745)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (745)
...+|+|.+|... |-....-.+|+..|+.+.| |.|..||..|..
T Consensus 42 ~~~~~~C~~C~~~--f~~~~~l~~H~~~h~~~~~-----------~~C~~C~~~f~~ 85 (106)
T 2ee8_A 42 DERPYTCDICHKA--FRRQDHLRDHRYIHSKEKP-----------FKCQECGKGFCQ 85 (106)
T ss_dssp CSCCCBCSSSCCB--CSCHHHHHHHGGGSCCCCT-----------TSCSSSCCCCSS
T ss_pred CCCCcCCCCccch--hCCHHHHHHHHHHhCCCCC-----------eECCCcCCcccC
Confidence 3467888888653 4444555677777776544 788888877654
|
| >2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=85.31 E-value=0.21 Score=40.51 Aligned_cols=44 Identities=25% Similarity=0.705 Sum_probs=33.0
Q ss_pred ccceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccc
Q psy16434 38 RNQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKF 94 (745)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (745)
...+|+|.+|+.. |-....-.+|+..|+.+.| |.|+.||..|..
T Consensus 26 ~~~~~~C~~C~~~--f~~~~~l~~H~~~h~~~~~-----------~~C~~C~~~f~~ 69 (82)
T 2kmk_A 26 DTRPYPCQYCGKR--FHQKSDMKKHTFIHTGEKP-----------HKCQVCGKAFSQ 69 (82)
T ss_dssp TCCCEECSSSCCE--ESSHHHHHHHHHHHHTCCC-----------EECTTTSCEESS
T ss_pred CCCCeeCCcCChh--hCCHHHHHHHHHHhcCCCC-----------CcCCCcchhhCC
Confidence 3568999999854 5555666789988887654 889999987653
|
| >2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.24 E-value=0.17 Score=41.14 Aligned_cols=48 Identities=23% Similarity=0.459 Sum_probs=34.0
Q ss_pred ccceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccce
Q psy16434 38 RNQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKFR 95 (745)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (745)
...+|+|.+|+.. |-....-.+|+..|+-....+ .|.|..||..|..+
T Consensus 4 ~~k~~~C~~C~k~--f~~~~~L~~H~~~h~~~~~~~--------~~~C~~C~k~f~~~ 51 (78)
T 2d9h_A 4 GSSGLQCEICGFT--CRQKASLNWHQRKHAETVAAL--------RFPCEFCGKRFEKP 51 (78)
T ss_dssp SCCCEECSSSCCE--ESSHHHHHHHHHHHHHHTTTC--------CEECTTTCCEESSH
T ss_pred CCcCeECCCCCCe--eCCHHHHHHHHHHhhccCCCc--------ccCCCCCCchhCCH
Confidence 4578999999864 555556678988887532221 38899999887654
|
| >1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=84.89 E-value=0.31 Score=39.98 Aligned_cols=50 Identities=26% Similarity=0.513 Sum_probs=35.3
Q ss_pred eccceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccce
Q psy16434 37 TRNQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKFR 95 (745)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (745)
+...+|+|.+|... |.....-.+|+.+||..... ...|.|..||..|..+
T Consensus 11 ~~~k~~~C~~C~~~--f~~~~~l~~H~~~~~~~~~~-------~~~~~C~~C~~~f~~~ 60 (86)
T 1x6h_A 11 TGEKPYACSHCDKT--FRQKQLLDMHFKRYHDPNFV-------PAAFVCSKCGKTFTRR 60 (86)
T ss_dssp CCCCCEECSSSSCE--ESSHHHHHHHHHHTTCSSCC-------CCCEECSSSCCEESCH
T ss_pred cCCCCCcCCCCCCc--cCCHHHHHHHHHHhcCCcCC-------CcceECCCCCChhCCH
Confidence 34678999999765 44445567899999976421 1158899999887654
|
| >1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=84.23 E-value=0.27 Score=39.31 Aligned_cols=46 Identities=26% Similarity=0.662 Sum_probs=34.0
Q ss_pred eccceeeEe--eecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccce
Q psy16434 37 TRNQTYQCL--VCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKFR 95 (745)
Q Consensus 37 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (745)
+...+|+|. .|+.. |-.-..-.+|+..|+.+.| |.|+.||..|..+
T Consensus 15 ~~~~~~~C~~~~C~k~--f~~~~~l~~H~~~h~~~~~-----------~~C~~C~~~f~~~ 62 (73)
T 1f2i_G 15 PKMRPYACPVESCDRR--FSRSDELTRHIRIHTGQKP-----------FQCRICMRNFSRS 62 (73)
T ss_dssp CCCCCEECSSTTBCCE--ESSHHHHHHHHHHHHCCCC-----------EECTTTCCEESCH
T ss_pred CCCCccCCcCCCCCCc--cCCHHHHHHHHHhhCCCCC-----------eECCCCCchhCCH
Confidence 456789998 49754 5555566789988887654 7899999987643
|
| >2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 | Back alignment and structure |
|---|
Probab=83.69 E-value=0.27 Score=35.59 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=29.6
Q ss_pred eccceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhcccc
Q psy16434 37 TRNQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCG 89 (745)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (745)
+...+|+|.+|... |-.-..-.+|+..|+.+.| |.|+.||
T Consensus 6 ~~~k~~~C~~C~k~--f~~~~~l~~H~~~H~~~~~-----------~~C~~cg 45 (45)
T 2epq_A 6 SGEKPYSCPVCGLR--FKRKDRMSYHVRSHDGSVG-----------KSGPSSG 45 (45)
T ss_dssp SSCCSSEETTTTEE--CSCHHHHHHHHHHHSCCCC-----------CCCCCCC
T ss_pred CCCCCCcCCCCCcc--cCCHHHHHHHHHHccCCCC-----------CCCcCCC
Confidence 34568999999864 4555556789988886654 6788887
|
| >4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus} | Back alignment and structure |
|---|
Probab=83.50 E-value=0.25 Score=39.40 Aligned_cols=43 Identities=23% Similarity=0.530 Sum_probs=33.9
Q ss_pred ceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccce
Q psy16434 40 QTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKFR 95 (745)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (745)
.||+|.+|+.. |-....-.+|+..|.-+.| |.|+.||+.|..+
T Consensus 3 Kpy~C~~C~k~--F~~~~~L~~H~~~Ht~ekp-----------~~C~~C~k~F~~~ 45 (60)
T 4gzn_C 3 RPFFCNFCGKT--YRDASGLSRHRRAHLGYRP-----------RSCPECGKCFRDQ 45 (60)
T ss_dssp CCEECTTTCCE--ESSHHHHHHHHHHHHTCCC-----------EECTTTCCEESSH
T ss_pred CCccCCCCCCE--eCCHHHHHHHHHHhCCCcC-----------eECCCCCCCcCCH
Confidence 58999999854 5566666789999977655 7899999988654
|
| >2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=83.23 E-value=0.33 Score=40.68 Aligned_cols=27 Identities=30% Similarity=0.561 Sum_probs=12.1
Q ss_pred ceeeEeeecCcchhhhhhhhhhhhhhccC
Q psy16434 40 QTYQCLVCKNKTLFHDLAEGARHVERHHW 68 (745)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (745)
.+|+|.+|... |-....-.+|+..|+-
T Consensus 34 ~~~~C~~C~~~--f~~~~~l~~H~~~h~~ 60 (95)
T 2yt9_A 34 KPYSCPVCGLR--FKRKDRMSYHVRSHDG 60 (95)
T ss_dssp CSEECSSSCCE--ESCHHHHHHHHHHHCC
T ss_pred CCCcCCCCCCc--cCCHHHHHHHHHHhcC
Confidence 44555555432 2233333455555543
|
| >2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=82.64 E-value=0.39 Score=41.18 Aligned_cols=45 Identities=18% Similarity=0.561 Sum_probs=34.4
Q ss_pred ccceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccce
Q psy16434 38 RNQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKFR 95 (745)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (745)
...+|+|..|... |.....-.+|+..|+...| |.|..|+..|..+
T Consensus 14 ~~~~~~C~~C~~~--f~~~~~l~~H~~~h~~~~~-----------~~C~~C~~~f~~~ 58 (106)
T 2ee8_A 14 TKKEFICKFCGRH--FTKSYNLLIHERTHTDERP-----------YTCDICHKAFRRQ 58 (106)
T ss_dssp CCCCCBCSSSCCB--CSSHHHHHHHHHHHCCSCC-----------CBCSSSCCBCSCH
T ss_pred CCcCeECCCCCCc--cCCHHHHHHHHHHcCCCCC-----------cCCCCccchhCCH
Confidence 4568999999754 5566666789999886544 8999999887643
|
| >2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.41 E-value=0.4 Score=41.00 Aligned_cols=46 Identities=24% Similarity=0.464 Sum_probs=34.9
Q ss_pred eccceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccce
Q psy16434 37 TRNQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKFR 95 (745)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (745)
...++|.|.+|+.. |-....-.+|+..|+=+.| |.|+.||..|.-+
T Consensus 24 ~~~~~h~C~~Cgk~--F~~~~~L~~H~~~H~~~k~-----------~~C~~C~k~F~~~ 69 (85)
T 2lv2_A 24 ASAECHLCPVCGES--FASKGAQERHLRLLHAAQV-----------FPCKYCPATFYSS 69 (85)
T ss_dssp CCCTTEECTTSCCE--ESSHHHHHHHHHTTSCSSS-----------EECTTSSCEESSH
T ss_pred CCCCCEECCCCCCC--cCcHHHHhhhhhhccCCCc-----------cCCCCCCCEeCCH
Confidence 35678999999864 5556666789999875543 8899999987643
|
| >2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=81.27 E-value=0.38 Score=40.38 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=12.1
Q ss_pred ceeeEeeecCcchhhhhhhhhhhhhhccC
Q psy16434 40 QTYQCLVCKNKTLFHDLAEGARHVERHHW 68 (745)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (745)
.+|+|.+|... |.....-.+|+..|+.
T Consensus 35 ~~~~C~~C~~~--f~~~~~l~~H~~~h~~ 61 (96)
T 2dmd_A 35 KPYKCKTCDYA--AADSSSLNKHLRIHSD 61 (96)
T ss_dssp CSEECSSSCCE--ESSHHHHHHHHHHSCC
T ss_pred CCEeCCCCCCc--cCCHHHHHHHHHHhCC
Confidence 45555555432 2333333455555543
|
| >2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=81.19 E-value=0.42 Score=38.74 Aligned_cols=48 Identities=19% Similarity=0.551 Sum_probs=33.4
Q ss_pred eccceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccce
Q psy16434 37 TRNQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKFR 95 (745)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (745)
+...+|+|.+|... |-....-.+|+.++|.... ..|.|..||..|..+
T Consensus 11 ~~~k~~~C~~C~k~--f~~~~~L~~H~~~~h~~~~---------~~~~C~~C~~~f~~~ 58 (77)
T 2ct1_A 11 SGEKPYECYICHAR--FTQSGTMKMHILQKHTENV---------AKFHCPHCDTVIARK 58 (77)
T ss_dssp SCCCSEECTTTCCE--ESCHHHHHHHHHHHSSSSC---------SSEECSSSSCEESSH
T ss_pred CCCCCeECCCcCch--hCCHHHHHHHHHHhcCCCC---------CccCCCCCCCccCCH
Confidence 34578999999764 4455566789886665421 148999999877643
|
| >2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=80.98 E-value=0.47 Score=39.81 Aligned_cols=44 Identities=20% Similarity=0.395 Sum_probs=30.9
Q ss_pred ccceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccc
Q psy16434 38 RNQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKF 94 (745)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (745)
...+|+|.+|.. .|.....-.+|+..|+...| |.|..||..|..
T Consensus 5 ~~~~~~C~~C~~--~f~~~~~l~~H~~~h~~~~~-----------~~C~~C~~~f~~ 48 (96)
T 2dmd_A 5 SSGPHKCEVCGK--CFSRKDKLKTHMRCHTGVKP-----------YKCKTCDYAAAD 48 (96)
T ss_dssp CCCCCCBTTTTB--CCCCHHHHHHHGGGCCCCCS-----------EECSSSCCEESS
T ss_pred CCcCeECCCCCC--ccCCHHHHHHHHHhcCCCCC-----------EeCCCCCCccCC
Confidence 356899999975 45566666789998886543 567777766643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 745 | ||||
| d1a6da1 | 245 | a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai | 7e-28 | |
| d1a6da1 | 245 | a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai | 2e-12 | |
| d1a6db1 | 243 | a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai | 3e-23 | |
| d1a6db1 | 243 | a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai | 9e-13 | |
| d1q3qa2 | 153 | c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon | 8e-22 | |
| d1q3qa1 | 258 | a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain | 1e-21 | |
| d1q3qa1 | 258 | a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain | 3e-08 | |
| d1a6db2 | 152 | c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon | 5e-21 | |
| d1assa_ | 152 | c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo | 8e-19 | |
| d1gmla_ | 168 | c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc | 2e-17 | |
| d1gmla_ | 168 | c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc | 0.002 | |
| d1q3qa3 | 107 | d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai | 8e-16 | |
| d1kp8a1 | 252 | a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc | 2e-14 | |
| d1a6da3 | 105 | d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai | 1e-13 | |
| d1ioka1 | 252 | a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par | 3e-13 | |
| d1we3a1 | 255 | a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The | 9e-10 | |
| d1we3a1 | 255 | a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The | 9e-05 | |
| d1a6db3 | 107 | d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai | 1e-08 | |
| d1sjpa1 | 180 | a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My | 7e-05 | |
| d1sjpa1 | 180 | a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My | 1e-04 |
| >d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Score = 110 bits (276), Expect = 7e-28
Identities = 65/277 (23%), Positives = 113/277 (40%), Gaps = 50/277 (18%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+ A NI A K AD VRT GP GM+K++++ I + ++ND ATI++E++
Sbjct: 5 KNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMD-------- 56
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
+EHP AK+I+ S+ Q+ +GDGT
Sbjct: 57 ------------------------------------VEHPTAKMIVEVSKAQDTAVGDGT 80
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
++ +G LL A+ LL G+ P+ I NGY+LA+ + +I+ +
Sbjct: 81 TTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAE 140
Query: 366 KGIKSAIMSKQYGNEDFLT-DLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQ 424
++ A + G + L + KA I + + +D + L + I
Sbjct: 141 LAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISV 200
Query: 425 GMVFKRSVEGDITKQ-----TKAKIAVYTCPVDIATT 456
G+ + GD+ + + K V++AT
Sbjct: 201 GVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATM 237
|
| >d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Score = 65.5 bits (159), Expect = 2e-12
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 503 ATENYMDDIERAVDDGVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFD 562
Y + + + F ++ +TLAEN G+ + KL + +G+ + G D
Sbjct: 144 RLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVD 203
Query: 563 INGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
+ +N+ V D G++D K AL+ A A IL
Sbjct: 204 L--DNNGVGDMKAKGVVDPLRVKTHALESAVEVATMIL 239
|
| >d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Score = 97.5 bits (242), Expect = 3e-23
Identities = 38/100 (38%), Positives = 67/100 (67%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
++A+ NI A +++VR++ GP GM+K++++ + + +TND TI++E+++EHPAAK+
Sbjct: 1 KDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKM 60
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHP 285
++ S+ Q+ +GDGT +I AG LL A L+ HP
Sbjct: 61 MVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHP 100
|
| >d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Score = 66.7 bits (162), Expect = 9e-13
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 503 ATENYMDDIERAVDDGVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFD 562
+Y I + F + + LAEN G+ +++ KL + H +G KTYG
Sbjct: 141 RLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYG-- 198
Query: 563 INGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
IN + D + G+++ A++ AT AA IL
Sbjct: 199 INVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMIL 236
|
| >d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Score = 90.4 bits (224), Expect = 8e-22
Identities = 41/102 (40%), Positives = 56/102 (54%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA+ +++ TET + I S D+LM F EE L++ + IA TGANVV
Sbjct: 19 ENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQ 78
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL KYG+M VR K D+ +L KA A + +
Sbjct: 79 KGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNV 120
|
| >d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Score = 93.3 bits (231), Expect = 1e-21
Identities = 65/262 (24%), Positives = 110/262 (41%), Gaps = 52/262 (19%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
+ + G +A NI A + A+TVRT GP GM+K++++ + + VTND ATI+ +++
Sbjct: 9 QRYVG-RDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKID-- 65
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
++HPAAK+++ ++ Q++
Sbjct: 66 ------------------------------------------LQHPAAKMMVEVAKTQDK 83
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
E GDGT ++ AG LL A+ LL + PS I GY LA K EIL + V
Sbjct: 84 EAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRAVLPAG 143
Query: 360 NVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPD------GSSSFNVDNVRITKIL 413
+ I+ +KQ G ++ L + I+P G + + I++
Sbjct: 144 GAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHK 203
Query: 414 GSGL-FNSEIVQGMVFKRSVEG 434
GL ++ +G +G
Sbjct: 204 NRGLGIGIDVFEGKPADMLEKG 225
|
| >d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Score = 53.3 bits (127), Expect = 3e-08
Identities = 33/156 (21%), Positives = 54/156 (34%), Gaps = 5/156 (3%)
Query: 445 AVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGAT 504
+ ++ A A + L + A+ I +
Sbjct: 98 ELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRAVLPAGGAPEIE---LAIRL 154
Query: 505 ENYMDDIERAVDDGVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDIN 564
+ Y + + F K+ KTLAEN G+ + E++ K+ S H G D+
Sbjct: 155 DEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDV- 213
Query: 565 GENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
D E GI++ K A+K A+ AA IL
Sbjct: 214 -FEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMIL 248
|
| >d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Score = 87.8 bits (217), Expect = 5e-21
Identities = 36/102 (35%), Positives = 52/102 (50%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA+ P++I E + I+ + KF EEN L E + I GANVV+
Sbjct: 18 KDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQ 77
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
DMA HYL++ G+ VR K D+ +L KA A+ + +
Sbjct: 78 KGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTI 119
|
| >d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Score = 81.6 bits (201), Expect = 8e-19
Identities = 34/102 (33%), Positives = 51/102 (50%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA+ ++I TE + V I ++ F E N ++ ++ I +GANVV+
Sbjct: 20 KNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQ 79
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL K G+ VR K D+ +L KA A + L
Sbjct: 80 KGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDL 121
|
| >d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Mouse (Mus musculus), gamma chain [TaxId: 10090]
Score = 78.2 bits (192), Expect = 2e-17
Identities = 20/102 (19%), Positives = 43/102 (42%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
+I + ++ E++ + I ++ + + EE + + + I +VV+
Sbjct: 24 KNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITE 83
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL + + +R K D R+ +A A + R
Sbjct: 84 KGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRP 125
|
| >d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Mouse (Mus musculus), gamma chain [TaxId: 10090]
Score = 37.3 bits (86), Expect = 0.002
Identities = 7/61 (11%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 419 NSEIVQGMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVD 476
+S +++G++ + V +I + ++ E++T + +
Sbjct: 1 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 60
Query: 477 E 477
E
Sbjct: 61 E 61
|
| >d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Score = 71.5 bits (175), Expect = 8e-16
Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
Query: 357 DVRNVENVTKGIKSAIMSKQYGNE-DFLTDLITKACVSILP--DGSSSFNVDNVRITKIL 413
D + E + K ++I K + + L L +A + DG ++DN++ K
Sbjct: 2 DPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKA 61
Query: 414 GSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
G G+ SE+V+ + G + + A+ +
Sbjct: 62 GEGVEESELVKAVTILIR-GGTEHVIDEVERALEDAVKVVKDVMED 106
|
| >d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Escherichia coli [TaxId: 562]
Score = 71.3 bits (174), Expect = 2e-14
Identities = 46/283 (16%), Positives = 90/283 (31%), Gaps = 54/283 (19%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+A + + AD V+ GP G N ++ +T D ++ RE+E+E
Sbjct: 9 NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDK---- 64
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
E+ A+++ + + GDGT
Sbjct: 65 ------------------------------------FENMGAQMVKEVASKANDAAGDGT 88
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
+ A A++ + G+ P ++ G A+ +E L V V
Sbjct: 89 TTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVE---ELKALSVGVVAGGGVAL 145
Query: 366 KGIKSAIMSKQYGNED------FLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN 419
+ S + + N D + I+ + +V + G+ +N
Sbjct: 146 IRVASKLADLRGQNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYN 205
Query: 420 S-EIVQGMVFKRSVEGDITKQTKAKI--AVYTCPVDIATTETK 459
+ G + + D TK T++ + A + + TTE
Sbjct: 206 AATEEYGNMIDMGI-LDPTKVTRSALQYAASVAGL-MITTECM 246
|
| >d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Score = 65.3 bits (159), Expect = 1e-13
Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 360 NVENVTKGIKSAIMSKQYGNE-DFLTDLITKACVSILP--DGSSSFNVDNVRITKILGSG 416
+ + K +A+ K G DFL DL+ KA ++ DG + + N+++ K G
Sbjct: 2 DDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGS 61
Query: 417 LFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
+ +++ + + G ++ + A+ +A T+
Sbjct: 62 VNDTQFISAVSILIR-GGTDHVVSEVERALNDAIRVVAITKED 103
|
| >d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Paracoccus denitrificans [TaxId: 266]
Score = 68.3 bits (166), Expect = 3e-13
Identities = 45/282 (15%), Positives = 91/282 (32%), Gaps = 51/282 (18%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+A R + AD V+ GP G N ++ +T D ++ +E+E+
Sbjct: 9 SDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDK---- 64
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
E+ A+++ + +E GDGT
Sbjct: 65 ------------------------------------FENMGAQMVREVASRTNDEAGDGT 88
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
+ A A++ + G+ P ++ G +A AK +E + + V
Sbjct: 89 TTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARGIVVGGGVALVQG 148
Query: 366 KGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQ- 424
+ + ++D +I +A + + + + VD + + +
Sbjct: 149 AKVLEGLSGAN-SDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNA 207
Query: 425 -----GMVFKRSVEGDITKQTKAKI--AVYTCPVDIATTETK 459
G +FK V D K + + A + + TTE
Sbjct: 208 QTEEYGDMFKFGVI-DPAKVVRTALEDAASVAGL-LITTEAM 247
|
| >d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Thermus thermophilus [TaxId: 274]
Score = 57.6 bits (138), Expect = 9e-10
Identities = 47/290 (16%), Positives = 87/290 (30%), Gaps = 51/290 (17%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
K E A A+ V+ GP G N ++ +T D T+ +E+E+E
Sbjct: 2 KILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELE 61
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
+E+ A+L+ + +
Sbjct: 62 DH----------------------------------------LENIGAQLLKEVASKTND 81
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLT--CFEVKD 357
GDGT + A A++ + G P + G + A+ +E + L V
Sbjct: 82 VAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVGIVPG 141
Query: 358 VRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGL 417
++ K G+E ++ +A + + + I + + +
Sbjct: 142 GGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAET 201
Query: 418 FNSE----IVQGMVFKRSVEG--DITKQTKAKI--AVYTCPVDIATTETK 459
N G G D K T++ + A + I TTE
Sbjct: 202 KNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGAL-ILTTEAV 250
|
| >d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Thermus thermophilus [TaxId: 274]
Score = 42.6 bits (99), Expect = 9e-05
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 518 GVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAG 577
G + + + +AEN G + + ++ ++ + + N +D EAG
Sbjct: 167 GAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNP----RYGFNAATGEFVDMVEAG 222
Query: 578 ILDLYLTKMWALKYATSAANTILQQTKAKIA 608
I+D AL+ A S IL T+A +A
Sbjct: 223 IVDPAKVTRSALQNAASIGALIL-TTEAVVA 252
|
| >d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Score = 51.0 bits (122), Expect = 1e-08
Identities = 16/102 (15%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 360 NVENVTKGIKSAIMSKQYGNE-DFLTDLITKACVSILP--DGSSSFNVDNVRITKILGSG 416
+ K ++++ SK D L ++ +A S+ DG + DN+++ K G
Sbjct: 4 EKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGA 63
Query: 417 LFNSEIVQGMVF------KRSVEGDITKQTKAKIAVYTCPVD 452
+ +++++ V V ++ + + V ++
Sbjct: 64 IDDTQLINKAVSILVRGETEHVVDEMERSITDSLHVVASALE 105
|
| >d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Score = 42.1 bits (98), Expect = 7e-05
Identities = 17/96 (17%), Positives = 32/96 (33%)
Query: 282 IEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341
E A+L+ ++ ++ GDGT + A AL+ + G P + G + A+
Sbjct: 3 YEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVE 62
Query: 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQY 377
K E L + + +
Sbjct: 63 KVTETLLKGAKIVAGGGVTLLQAAPTLDELKLEGDE 98
|
| >d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Score = 41.3 bits (96), Expect = 1e-04
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 508 MDDIERAVDDGVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGEN 567
+E G N K + +K +A N+G++ V K+ + G +N +
Sbjct: 91 ELKLEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLP------AGHGLNAQT 144
Query: 568 SSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
D AG+ D AL+ A S A L
Sbjct: 145 GVYEDLLAAGVADPVKVTRSALQNAASIAGLFL 177
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 745 | |||
| d1q3qa1 | 258 | Thermosome, E domain {Archaeon Thermococcus sp. ks | 100.0 | |
| d1a6db1 | 243 | Thermosome, E domain {Archaeon Thermoplasma acidop | 100.0 | |
| d1a6da1 | 245 | Thermosome, E domain {Archaeon Thermoplasma acidop | 100.0 | |
| d1q3qa2 | 153 | Thermosome, A-domain {Archaeon Thermococcus sp. ks | 99.97 | |
| d1assa_ | 152 | Thermosome, A-domain {Archaeon Thermoplasma acidop | 99.97 | |
| d1a6db2 | 152 | Thermosome, A-domain {Archaeon Thermoplasma acidop | 99.96 | |
| d1gmla_ | 168 | Thermosome, A-domain {Mouse (Mus musculus), gamma | 99.96 | |
| d1kp8a1 | 252 | GroEL, E domain {Escherichia coli [TaxId: 562]} | 99.94 | |
| d1ioka1 | 252 | GroEL, E domain {Paracoccus denitrificans [TaxId: | 99.94 | |
| d1we3a1 | 255 | GroEL, E domain {Thermus thermophilus [TaxId: 274] | 99.93 | |
| d1sjpa1 | 180 | GroEL, E domain {Mycobacterium tuberculosis, GroEL | 99.71 | |
| d1q3qa3 | 107 | Thermosome, I domain {Archaeon Thermococcus sp. ks | 99.38 | |
| d1a6da3 | 105 | Thermosome, I domain {Archaeon Thermoplasma acidop | 99.35 | |
| d1a6db3 | 107 | Thermosome, I domain {Archaeon Thermoplasma acidop | 99.19 | |
| d1gmla_ | 168 | Thermosome, A-domain {Mouse (Mus musculus), gamma | 98.95 | |
| d1assa_ | 152 | Thermosome, A-domain {Archaeon Thermoplasma acidop | 98.47 | |
| d1q3qa2 | 153 | Thermosome, A-domain {Archaeon Thermococcus sp. ks | 98.42 | |
| d1a6db2 | 152 | Thermosome, A-domain {Archaeon Thermoplasma acidop | 98.41 | |
| d1ioka3 | 97 | GroEL, I domain {Paracoccus denitrificans [TaxId: | 97.22 | |
| d1q3qa3 | 107 | Thermosome, I domain {Archaeon Thermococcus sp. ks | 97.17 | |
| d1kp8a3 | 97 | GroEL, I domain {Escherichia coli [TaxId: 562]} | 96.91 | |
| d1a6da3 | 105 | Thermosome, I domain {Archaeon Thermoplasma acidop | 96.8 | |
| d1sjpa3 | 89 | GroEL, I domain {Mycobacterium tuberculosis, GroEL | 96.61 | |
| d1a6db3 | 107 | Thermosome, I domain {Archaeon Thermoplasma acidop | 96.0 | |
| d1sjpa2 | 184 | GroEL, A domain {Mycobacterium tuberculosis, GroEL | 95.39 | |
| d1ioka2 | 176 | GroEL, A domain {Paracoccus denitrificans [TaxId: | 95.1 | |
| d1kida_ | 193 | GroEL, A domain {Escherichia coli [TaxId: 562]} | 95.09 | |
| d1kida_ | 193 | GroEL, A domain {Escherichia coli [TaxId: 562]} | 94.86 | |
| d1srva_ | 145 | GroEL, A domain {Thermus thermophilus [TaxId: 274] | 94.39 | |
| d1we3a3 | 86 | GroEL, I domain {Thermus thermophilus [TaxId: 274] | 94.03 | |
| d1sjpa2 | 184 | GroEL, A domain {Mycobacterium tuberculosis, GroEL | 93.54 | |
| d1ioka2 | 176 | GroEL, A domain {Paracoccus denitrificans [TaxId: | 92.44 | |
| d1srva_ | 145 | GroEL, A domain {Thermus thermophilus [TaxId: 274] | 92.03 |
| >d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=100.00 E-value=1.9e-39 Score=337.18 Aligned_cols=255 Identities=32% Similarity=0.475 Sum_probs=215.3
Q ss_pred eecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhh
Q psy16434 173 AIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQM 252 (745)
Q Consensus 173 ~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~ 252 (745)
.+|++|+++.+| ++++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||+|+++++||+++|+++++++
T Consensus 2 ~~~~~~~~~~~g-~~a~~~~~~a~~~ia~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~a~~~~~~a~~ 80 (258)
T d1q3qa1 2 VILPEGTQRYVG-RDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKT 80 (258)
T ss_dssp CCSCTTCEEEEH-HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHHHHHHHHHHHH
T ss_pred EEeCCCCccccC-HHHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEeccHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 478999999999 6899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHH
Q psy16434 253 QEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEI 332 (745)
Q Consensus 253 qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I 332 (745)
|++++||| |||+++|+++||+++.++++.|+||..|
T Consensus 81 ~~~~~GDG--------------------------------------------ttt~~vLa~~ll~~~~~li~~G~~p~~i 116 (258)
T d1q3qa1 81 QDKEAGDG--------------------------------------------TTTAVVIAGELLRKAEELLDQNIHPSII 116 (258)
T ss_dssp HHHHTSSC--------------------------------------------HHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHccc--------------------------------------------cchhHHhHHHHHhhhHHHHhcCCChhHH
Confidence 99999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEc
Q psy16434 333 VNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKI 412 (745)
Q Consensus 333 ~~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki 412 (745)
++||+.|.+.+++.|+++++....+..+...+.....+ .+.-.
T Consensus 117 ~~g~~~a~~~~~~~l~~~~~~~~~~~~g~~ei~~a~~l-----------------~~~a~-------------------- 159 (258)
T d1q3qa1 117 TKGYALAAEKAQEILDEIAIRAVLPAGGAPEIELAIRL-----------------DEYAK-------------------- 159 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEEEEECTTHHHHHHHHHH-----------------HHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCchHHHHHHHHH-----------------Hhhhc--------------------
Confidence 99999999999999998775421111111111100000 00000
Q ss_pred cCCCcccceeEeeEEEeecccCCceeeeCceEEEeccCCCccccccCCCCCcccccccccEEEEEECCeeEEEEEecccc
Q psy16434 413 LGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAE 492 (745)
Q Consensus 413 ~Ggs~~dS~lv~G~~l~~~~~~~~~~i~nakIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~ 492 (745)
T Consensus 160 -------------------------------------------------------------------------------- 159 (258)
T d1q3qa1 160 -------------------------------------------------------------------------------- 159 (258)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceee
Q psy16434 493 SRIATLVIRGATENYMDDIERAVDDGVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVID 572 (745)
Q Consensus 493 ~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~d 572 (745)
.....-..|..++..++..+|++|++|+|+|+.+++++++..|..+..+.|+|+..| .+.|
T Consensus 160 -----------------~~~~~~~~a~~~~a~Al~~Ip~~la~N~G~d~i~~v~~l~~~~~~~~~~~gvdv~~G--~~~D 220 (258)
T d1q3qa1 160 -----------------QVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEG--KPAD 220 (258)
T ss_dssp -----------------HHCHHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTEEEETTTT--EEEE
T ss_pred -----------------ccchHHHHHHHHHHHhccchhhhhhhhcCCccceehhhhhhhcccCCCceEEEEECC--EEeE
Confidence 000011234455555666889999999999999999999999988778899999999 9999
Q ss_pred cccccccccccchhhHhhhhhhcchhhcccccceee
Q psy16434 573 AAEAGILDLYLTKMWALKYATSAANTILQQTKAKIA 608 (745)
Q Consensus 573 m~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kIl 608 (745)
+...|++||+.|+...+..|++.+.+++++|+...+
T Consensus 221 ~~~~Gii~p~~vk~~~l~~A~e~a~~IL~iD~iI~a 256 (258)
T d1q3qa1 221 MLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAA 256 (258)
T ss_dssp TTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred chHcCccccHHHHHHHHHHHHHHhCcceeEccEEee
Confidence 999999999999999999999999999999987654
|
| >d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Probab=100.00 E-value=2.1e-38 Score=326.50 Aligned_cols=241 Identities=28% Similarity=0.462 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcCccchhhh
Q psy16434 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVII 266 (745)
Q Consensus 187 ~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GDGt~~~~~ 266 (745)
++++.|+++|..|+++++|||||+||+|||+++.|+++|||||+||+|++.++||.++++++++++|++++|||
T Consensus 2 ~a~~~ni~a~~~i~~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~a~~~~~~~~~~~~~~GDG------ 75 (243)
T d1a6db1 2 DAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDG------ 75 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHHTCTTCCCTTH------
T ss_pred hHHHHHHHHHHHHHHHHhCCcCCCCCeEEEECCCCCeEEecchhhHhhhhhccchHHHHHHHHHHHHHHHhhcC------
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHh
Q psy16434 267 FAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEI 346 (745)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~~~l~~ 346 (745)
|||+++|+++||+++.+++..|+||..|++||+.|++.+++.
T Consensus 76 --------------------------------------ttt~~vl~~~ll~~~~~~i~~G~~p~~I~~g~~~a~~~~~~~ 117 (243)
T d1a6db1 76 --------------------------------------TTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRV 117 (243)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------CcchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999
Q ss_pred cccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccceeEeeE
Q psy16434 347 LPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGM 426 (745)
Q Consensus 347 L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~lv~G~ 426 (745)
|++++.+.... .-.+. -.-.++..+.+....+.
T Consensus 118 L~~~a~~v~~~-------------~ggGa---~e~~~a~~l~~~a~~~~------------------------------- 150 (243)
T d1a6db1 118 IDEISTKIAYA-------------AGGGA---TAAEIAFRLRSYAQKIG------------------------------- 150 (243)
T ss_dssp HHHHCEECEEE-------------ETTTH---HHHHHHHHHHHHHHHTC-------------------------------
T ss_pred HHhhccccccc-------------cCCCc---hhHHHHHHHhhhhhccC-------------------------------
Confidence 99877652110 00000 01112222221111110
Q ss_pred EEeecccCCceeeeCceEEEeccCCCccccccCCCCCcccccccccEEEEEECCeeEEEEEecccccceeEEEEcCCchh
Q psy16434 427 VFKRSVEGDITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATEN 506 (745)
Q Consensus 427 ~l~~~~~~~~~~i~nakIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~~~a~TIIlrG~t~~ 506 (745)
|
T Consensus 151 ---------------------------------------------------------------------------g---- 151 (243)
T d1a6db1 151 ---------------------------------------------------------------------------G---- 151 (243)
T ss_dssp ---------------------------------------------------------------------------S----
T ss_pred ---------------------------------------------------------------------------C----
Confidence 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchh
Q psy16434 507 YMDDIERAVDDGVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKM 586 (745)
Q Consensus 507 IldE~eral~DAL~vlk~~~~~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG 586 (745)
.-+-+++++..+++.+|++|++|+|+|+.+++.+|+..|..+..++|+|+.++ .+.||...+||||+.++.
T Consensus 152 -------~~q~~i~~~a~Ale~ip~~LaeNaG~d~~~~i~~l~~~h~~~~~~~Gvd~~~g--~i~d~~~~gV~dp~~vk~ 222 (243)
T d1a6db1 152 -------RQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTG--EIEDMVKNGVIEPIRVGK 222 (243)
T ss_dssp -------SHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTT--EEEETTTTTCEEEHHHHH
T ss_pred -------HHHHHHHHHHHHhhccCccccccCCCChhHHHHHHHHHHhCCCCceeEECcCC--EEeehHhcccEecHHHHH
Confidence 01235566666677899999999999999999999999999888999999999 999999999999999999
Q ss_pred hHhhhhhhcchhhcccccce
Q psy16434 587 WALKYATSAANTILQQTKAK 606 (745)
Q Consensus 587 ~vL~~A~e~a~mil~IDn~k 606 (745)
++++.|++.+.|+++||++.
T Consensus 223 ~ai~~A~e~a~~iL~iD~ii 242 (243)
T d1a6db1 223 QAIESATEAAIMILRIDDVI 242 (243)
T ss_dssp HHHHHHHHHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999853
|
| >d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Probab=100.00 E-value=1.5e-38 Score=328.02 Aligned_cols=243 Identities=32% Similarity=0.509 Sum_probs=204.5
Q ss_pred ccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcCcc
Q psy16434 182 FSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 182 ~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GDGt 261 (745)
.+| .+|+..|++||.+|+++++|||||+||+|||+++.|+++|||||+||+|++.++||.++|+++++++|+.++|||
T Consensus 2 ~~g-~~a~~~~~~~~~~i~~~v~~tlGP~G~~~~i~~~~g~~~it~Dg~ti~~~~~~~~~~a~~~~~~~~~~~~~~GDG- 79 (245)
T d1a6da1 2 EQG-KNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDG- 79 (245)
T ss_dssp EEH-HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECSSSCEEEECCHHHHHHHSCCCSHHHHHHHGGGGCTTTCSTTH-
T ss_pred Cch-HHHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCCCCeEEeccHhHHhhhcchhhHHHHHHHHHHHhhHHhhccc-
Confidence 345 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+++|+++||+++.+++..|+||..|++||+.|++
T Consensus 80 -------------------------------------------ttt~ivla~~ll~~~~~ll~~G~~p~~i~~g~~~a~~ 116 (245)
T d1a6da1 80 -------------------------------------------TTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVN 116 (245)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred -------------------------------------------chhhHHHHHHHHHHHHHHHHCCCCchhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccce
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSE 421 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~ 421 (745)
.+++.|++++.+......+.. .-.++.-+......+ .
T Consensus 117 ~a~~~L~~~a~~~~v~g~ga~-----------------e~~l~~~l~~~a~~~------------------~-------- 153 (245)
T d1a6da1 117 EARKIIDEIAEKSFLWGGGAV-----------------EAELAMRLAKYANSV------------------G-------- 153 (245)
T ss_dssp HHHHHHHHHCEECEEETTTHH-----------------HHHHHHHHHHHHHTS------------------C--------
T ss_pred HHHHHHHhhccceeecCchhH-----------------HHHHHHHHHHHHhcc------------------C--------
Confidence 999999987654211100000 001111111100000 0
Q ss_pred eEeeEEEeecccCCceeeeCceEEEeccCCCccccccCCCCCcccccccccEEEEEECCeeEEEEEecccccceeEEEEc
Q psy16434 422 IVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIR 501 (745)
Q Consensus 422 lv~G~~l~~~~~~~~~~i~nakIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~~~a~TIIlr 501 (745)
|
T Consensus 154 ---g---------------------------------------------------------------------------- 154 (245)
T d1a6da1 154 ---G---------------------------------------------------------------------------- 154 (245)
T ss_dssp ---H----------------------------------------------------------------------------
T ss_pred ---C----------------------------------------------------------------------------
Confidence 0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccccc
Q psy16434 502 GATENYMDDIERAVDDGVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDL 581 (745)
Q Consensus 502 G~t~~IldE~eral~DAL~vlk~~~~~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds 581 (745)
.-+-+..++..+++.+|++|++|+|+|+.+++.+++..|.++...+|+|+.++ .+.++...+|+||
T Consensus 155 ------------~eq~a~~~~a~Ale~ip~~laeNaG~D~i~iv~~l~~~~~~~~~~~Gv~~~~g--~i~d~~~~gV~dp 220 (245)
T d1a6da1 155 ------------REQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNN--GVGDMKAKGVVDP 220 (245)
T ss_dssp ------------HHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHHHHTTCTTEEEETTTT--EEEEHHHHTCEEE
T ss_pred ------------HHHHHHHHHHHHHhhhhhhhhccCCCCchhhhhhhhcccccCCceeeEEccCC--eEeehHhcCcccc
Confidence 00124556666666899999999999999999999999998888899999999 9999999999999
Q ss_pred ccchhhHhhhhhhcchhhcccccc
Q psy16434 582 YLTKMWALKYATSAANTILQQTKA 605 (745)
Q Consensus 582 ~lVkG~vL~~A~e~a~mil~IDn~ 605 (745)
+.++.++++.|++.+.|+++||++
T Consensus 221 ~~vk~~~l~~A~e~a~~iL~iD~i 244 (245)
T d1a6da1 221 LRVKTHALESAVEVATMILRIDDV 244 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhcee
Confidence 999999999999999999999986
|
| >d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=99.97 E-value=2.9e-31 Score=254.76 Aligned_cols=149 Identities=30% Similarity=0.391 Sum_probs=143.9
Q ss_pred hhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCc
Q psy16434 585 KMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAK 664 (745)
Q Consensus 585 kG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~ 664 (745)
||+++++.+.+..|+++++|++|++++||||++++++++++.++++++++.|.++|+++++++|++|+++|+||||++++
T Consensus 1 kGvv~~k~~~~~~mp~~i~n~kIlll~~~Le~~k~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~nvvl~~k~ 80 (153)
T d1q3qa2 1 RGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKG 80 (153)
T ss_dssp SSEEESCCCSSTTSCSEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSC
T ss_pred CeEEEeCCCCCccCCcccCCccEEEEecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHhccCccceeecCC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCcccccc
Q psy16434 665 FGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTCK 733 (745)
Q Consensus 665 I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~~ 733 (745)
|+|.|+|||.++||+++++++++||+|||++|||+++++++++.+++||+|+.|+++ |.++|.+-.-|+
T Consensus 81 I~~~a~~~l~~~gI~~v~~v~~~dl~ria~~tGa~iv~si~~l~~~~LG~~~~~~~~~~g~~~~~~~~gc~ 151 (153)
T d1q3qa2 81 IDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCK 151 (153)
T ss_dssp BCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEECCS
T ss_pred CcHHHHHHHHHcCCceeccCCHHHHHHHHHhhCCEEecchhhCCcccCeeeEEEEEEEECCeeEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999986 888888777664
|
| >d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Probab=99.97 E-value=1.9e-31 Score=255.77 Aligned_cols=150 Identities=25% Similarity=0.321 Sum_probs=145.6
Q ss_pred chhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCC
Q psy16434 584 TKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGA 663 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~ 663 (745)
|+|+++++.+.+..|++++++++|++++||||+++++.++++.+++++++++|.++|++++++++++|+++||||||+++
T Consensus 1 i~Gvv~~k~~~~~~mp~~i~~~kI~ll~~~Le~~k~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~nvvl~~~ 80 (152)
T d1assa_ 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQK 80 (152)
T ss_dssp CCCEEESCCCSCTTSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEESS
T ss_pred CeEEEEeCccCCCCCCccccCceEEEEecccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEec
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCcccccc
Q psy16434 664 KFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTCK 733 (745)
Q Consensus 664 ~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~~ 733 (745)
+|+|+|+|||.++||+++++++++||+|||++|||+++++++++.+++||+|+.|+++ |.++|++-.-|+
T Consensus 81 ~I~~~a~~~l~k~gI~~v~~v~~~dl~ria~atGa~iv~s~~~l~~~~LG~~~~v~~~~ig~~~~~~~~GCk 152 (152)
T d1assa_ 81 GIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCK 152 (152)
T ss_dssp CBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEESCC
T ss_pred cccHHHHHHHHHcCCccccCCCHHHHHHHHHHhCCceeCCcccCCcccCeeeeEEEEEEECCEEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999996 888998888775
|
| >d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Probab=99.96 E-value=5.2e-31 Score=252.72 Aligned_cols=148 Identities=26% Similarity=0.316 Sum_probs=143.2
Q ss_pred hhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcc
Q psy16434 586 MWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKF 665 (745)
Q Consensus 586 G~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I 665 (745)
|+++++.+.+..|++++++++|++++||||++++++++++.+++++++++|.++|+++++++|++|+++|+||||++++|
T Consensus 1 Gvv~~k~~~~~~mpk~i~~~kIlll~~~Le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~nvv~~~k~I 80 (152)
T d1a6db2 1 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGI 80 (152)
T ss_dssp EEEESCCCSSTTSCSEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCB
T ss_pred CEEEeccCCCCCCCCcccCCcEEEEecccccccccccceeeecCHHHHHHHHHHHHHHHHHHHHHHhccCCceEEecCCC
Confidence 56788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCcccccc
Q psy16434 666 GDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTCK 733 (745)
Q Consensus 666 ~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~~ 733 (745)
+|+|+|||.++||+++++++++||+|||++|||+++++++++.+++||+|+.|++. |.++|.+-..|+
T Consensus 81 dd~a~~~l~k~gI~~v~~v~~~dl~rla~~tGa~iv~s~~~l~~~~LG~~~~v~~~~~g~~~~~~~~gc~ 150 (152)
T d1a6db2 81 DDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCK 150 (152)
T ss_dssp CHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEEES
T ss_pred cHHHHHHHHHcCcchhccCCHHHHHHHHHHhCCeeecchhhCCcccCcCceEEEEEEECCEEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999986 888888888775
|
| >d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Mouse (Mus musculus), gamma chain [TaxId: 10090]
Probab=99.96 E-value=4.5e-30 Score=249.98 Aligned_cols=153 Identities=16% Similarity=0.204 Sum_probs=130.8
Q ss_pred ccccchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEE
Q psy16434 580 DLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVV 659 (745)
Q Consensus 580 Ds~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVV 659 (745)
||++++|+++++.+.+..|++++++++|++++|||++++++.++++.++++++++.|.++|+++++++|++|+++|||||
T Consensus 1 DS~li~Gvvi~k~~~~~~m~~~i~~~kIlll~~~le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vv 80 (168)
T d1gmla_ 1 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVV 80 (168)
T ss_dssp CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSEE
T ss_pred CcEEEEEEEEecccCCcCCccccCCceEEEEeccccccccccccceecCCHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcc-cCCceEe--cccccCccccc
Q psy16434 660 VAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSF-CPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 660 l~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~-c~~~~~~--~~e~~~~~~~~ 732 (745)
+++++|||+|+|||.++||++++|++++||+|||++|||+++++++++++++||+ |+.++++ |.++|.+.+.|
T Consensus 81 ~~~~~I~~~a~~~L~~~gI~~~~rv~~~dl~ria~~tga~iv~si~~l~~~~lG~~~~~~~~~~~~~~~~~~~~~~ 156 (168)
T d1gmla_ 81 ITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDC 156 (168)
T ss_dssp EESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEEE
T ss_pred EEcCCCCHHHHHHHHHCCCeeeccCCHHHHHHHHHHHCCceeCchhhcCcccccccccEEEEEEECCeEEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999 5666664 77777654443
|
| >d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=2.2e-27 Score=245.05 Aligned_cols=234 Identities=20% Similarity=0.296 Sum_probs=188.6
Q ss_pred cChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccCh----hhHHHHHHHhhhhchhc
Q psy16434 183 SGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHP----AAKLIILGSQMQEEEMG 258 (745)
Q Consensus 183 ~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP----~akll~~~s~~qd~~~G 258 (745)
+| +++|..+++++..|++.+++||||+|++|||.+..|.+.|||||+||++++.++|| .++++++++.++++.+|
T Consensus 7 fg-~dar~~ll~gi~~la~~v~~TLGP~g~~~~i~~~~g~~~iTkDg~ti~~~i~~~d~~e~~~a~~~~~~a~~~~~~~G 85 (252)
T d1kp8a1 7 FG-NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAG 85 (252)
T ss_dssp EH-HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CC-HHHHHHHHHHHHHHHhhHHhccCCCCCeEEEEcCCCCeEEEecchheeecccccchHHHHHHHHHHHHHHhhhHHhc
Confidence 44 58999999999999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred CccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy16434 259 DGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKL 338 (745)
Q Consensus 259 DGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~ 338 (745)
|| ||++++|++++|+++.+++..|+||..|++||+.
T Consensus 86 Dg--------------------------------------------ttt~~vla~~ll~~~~~~i~~G~~p~~i~~gi~~ 121 (252)
T d1kp8a1 86 DG--------------------------------------------TTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 121 (252)
T ss_dssp SC--------------------------------------------HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cc--------------------------------------------cchhHHHHHHHHHHHHHHHHcCCcchhhhhhhhh
Confidence 99 9999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcc
Q psy16434 339 ALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLF 418 (745)
Q Consensus 339 a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~ 418 (745)
|.+.+++.|++++.+... .+...+..++.+....|..+.++.++
T Consensus 122 a~~~v~~~L~~~s~~i~~--~~~~~~v~~~~~~~~~k~~n~d~~iG---------------------------------- 165 (252)
T d1kp8a1 122 AVTVAVEELKALSVGVVA--GGGVALIRVASKLADLRGQNADQNVG---------------------------------- 165 (252)
T ss_dssp HHHHHHHHHHHHCBCEEE--TTTHHHHHHHHHTTTCCCSSHHHHHH----------------------------------
T ss_pred HHHHHHHHHHhcceeecc--CchhhhhHHHHHhhhhcccCccHHHh----------------------------------
Confidence 999999999998876321 11222222222222222211111111
Q ss_pred cceeEeeEEEeecccCCceeeeCceEEEeccCCCccccccCCCCCcccccccccEEEEEECCeeEEEEEecccccceeEE
Q psy16434 419 NSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATL 498 (745)
Q Consensus 419 dS~lv~G~~l~~~~~~~~~~i~nakIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~~~a~TI 498 (745)
T Consensus 166 -------------------------------------------------------------------------------- 165 (252)
T d1kp8a1 166 -------------------------------------------------------------------------------- 165 (252)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccc
Q psy16434 499 VIRGATENYMDDIERAVDDGVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGI 578 (745)
Q Consensus 499 IlrG~t~~IldE~eral~DAL~vlk~~~~~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI 578 (745)
..+++.++...-+++++|+|.++..++.++... ....|+|...+ .+.++++.|+
T Consensus 166 --------------------~~Iv~~Al~~p~~~i~~nag~~g~~~~~~v~~~----~~~~g~~~~~~--~~g~~~~~G~ 219 (252)
T d1kp8a1 166 --------------------IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGG----DGNYGYNAATE--EYGNMIDMGI 219 (252)
T ss_dssp --------------------HHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHS----CTTEEEETTTT--EEEETTTTTC
T ss_pred --------------------HHHHHHHHHHHHHHHHHhhhhcccccceeeeec----CCCeeEEEEEE--EEEEEEeecc
Confidence 112222221122778899999999999887542 34679999888 8899999999
Q ss_pred cccccchhhHhhhhhhcchhhcccc
Q psy16434 579 LDLYLTKMWALKYATSAANTILQQT 603 (745)
Q Consensus 579 ~Ds~lVkG~vL~~A~e~a~mil~ID 603 (745)
.||+.|....+..|...+.+++..+
T Consensus 220 idP~~Vt~~al~~a~~~~~~iL~te 244 (252)
T d1kp8a1 220 LDPTKVTRSALQYAASVAGLMITTE 244 (252)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHTEE
T ss_pred CCcceeccHhhhhheeccceeEeec
Confidence 9999999999999999888887654
|
| >d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=1e-26 Score=239.99 Aligned_cols=234 Identities=22% Similarity=0.311 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccCh----hhHHHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHP----AAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP----~akll~~~s~~qd~~~GDGt 261 (745)
+++|..+++++..|++.+++||||+|++|||.+..|.+.|||||+||++++.+.|| .++++.+++.++++++|||
T Consensus 9 ~~ar~~~l~gi~~l~~~v~~tlGp~G~~v~i~~~~g~~~ITkDg~TI~~~i~~~~~~e~~~a~l~~~~a~~~~~~~gDg- 87 (252)
T d1ioka1 9 SDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDG- 87 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHGGGGCSTH-
T ss_pred HHHHHHHHHHHHHHHHhHHhccCCCcCeEEEEcCCCCceEEcCCceeeeccccCChHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 58999999999999999999999999999999999999999999999999999999 6999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||.++|+.+|++++.+++..|+||..|.+|++.+.+
T Consensus 88 -------------------------------------------ttt~~vla~~ll~~g~~~l~~G~~p~~i~~g~~~a~~ 124 (252)
T d1ioka1 88 -------------------------------------------TTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATA 124 (252)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -------------------------------------------hchhHHHHHHHHHHHHHHHHcCCCcchhhhhHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccce
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSE 421 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~ 421 (745)
.+++.|++++.+... .+...+.+++.+....+..+.++.
T Consensus 125 ~v~~~l~~~a~~i~~--~g~~al~~~~~~l~~~~~~~~d~~--------------------------------------- 163 (252)
T d1ioka1 125 KVVEAIKSAARGIVV--GGGVALVQGAKVLEGLSGANSDQD--------------------------------------- 163 (252)
T ss_dssp HHHHHHHTTCBCEEE--TTTHHHHHHGGGGGSCCCSSHHHH---------------------------------------
T ss_pred HHHHHHHHhcCCCCC--chHHhhHHHHHHHHhhhcccchHH---------------------------------------
Confidence 999999988765321 122222222221111110000000
Q ss_pred eEeeEEEeecccCCceeeeCceEEEeccCCCccccccCCCCCcccccccccEEEEEECCeeEEEEEecccccceeEEEEc
Q psy16434 422 IVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIR 501 (745)
Q Consensus 422 lv~G~~l~~~~~~~~~~i~nakIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~~~a~TIIlr 501 (745)
T Consensus 164 -------------------------------------------------------------------------------- 163 (252)
T d1ioka1 164 -------------------------------------------------------------------------------- 163 (252)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccccc
Q psy16434 502 GATENYMDDIERAVDDGVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDL 581 (745)
Q Consensus 502 G~t~~IldE~eral~DAL~vlk~~~~~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds 581 (745)
-+..++..++....+++++|+|.+...++.+.... .....|+|...+ .+.+++..|+.||
T Consensus 164 ---------------~G~~iv~~Al~~p~~~i~~naG~dg~~vv~~~~~~---~~~~~g~~~~~~--~~g~~~~~GiidP 223 (252)
T d1ioka1 164 ---------------AGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRES---SDKAFGFNAQTE--EYGDMFKFGVIDP 223 (252)
T ss_dssp ---------------HHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHSC---CSTTEEEETTTT--EEEEHHHHTCEEE
T ss_pred ---------------HHHHHHHHHHHHHHHHHHhccCCCcceEEEeeccc---CcCCEEEEceee--eEeeeecccccCc
Confidence 01233333333333788999999999999887543 235689999988 8899999999999
Q ss_pred ccchhhHhhhhhhcchhhccccc
Q psy16434 582 YLTKMWALKYATSAANTILQQTK 604 (745)
Q Consensus 582 ~lVkG~vL~~A~e~a~mil~IDn 604 (745)
+.|...++..|.+.+.++++.+-
T Consensus 224 ~kVt~~al~~A~sva~~lltte~ 246 (252)
T d1ioka1 224 AKVVRTALEDAASVAGLLITTEA 246 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHTEEE
T ss_pred HHHHHHHHHHHHhhhhHHHhhce
Confidence 99999999999999999988664
|
| >d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=2.6e-25 Score=229.42 Aligned_cols=240 Identities=22% Similarity=0.299 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccc----cChhhHHHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEI----EHPAAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~----~hP~akll~~~s~~qd~~~GDGt 261 (745)
+++|...++++..|++++++||||+|+++||.++.|.+.|||||.||++++++ +||.++++.+++.++++..|||
T Consensus 8 ~~ar~~l~~gv~~la~av~~tlGP~G~~v~i~~~~g~~~itkdg~ti~~~i~l~d~~e~~~a~~~~~~~~~~~~~~gDg- 86 (255)
T d1we3a1 8 EAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDG- 86 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred HHHHHHHHHhHHHHHHHHhcccCCCcCeEEEEcCCCCceEecchhhhhhhccccchhhhhHHHHHHHhhhhhHHHhhcc-
Confidence 68999999999999999999999999999999999999999999999999998 5788999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
||+.++|++++++++..++..|.||..|++|++.|.+
T Consensus 87 -------------------------------------------ttt~~vl~~~~l~~~~~~i~~G~~~~~i~~g~~~a~~ 123 (255)
T d1we3a1 87 -------------------------------------------TTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVE 123 (255)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -------------------------------------------hhHHHHHHHHHHHhhhhHHhcCCccchhhhhhhhhhH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHH-hhcCCCCCCCCccceEEEEccCCCcccc
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACV-SILPDGSSSFNVDNVRITKILGSGLFNS 420 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~-~v~~~~~~~~dl~~I~I~ki~Ggs~~dS 420 (745)
.+++.|++++.+..... + ...+.+...... .....
T Consensus 124 ~al~~l~~~~~~~~~v~---------------g------gg~~~~~~~~~~~~~~~~----------------------- 159 (255)
T d1we3a1 124 AAVEKIKALAIPVGIVP---------------G------GGVTLLRAISAVEELIKK----------------------- 159 (255)
T ss_dssp HHHHHHHHTCBCCCEEE---------------T------TTHHHHHHHHHHHHHHTT-----------------------
T ss_pred HHHHHHHHHhhhcceec---------------c------chhhhhhhhhhhHhhccC-----------------------
Confidence 99999988765421000 0 000000000000 00000
Q ss_pred eeEeeEEEeecccCCceeeeCceEEEeccCCCccccccCCCCCcccccccccEEEEEECCeeEEEEEecccccceeEEEE
Q psy16434 421 EIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVI 500 (745)
Q Consensus 421 ~lv~G~~l~~~~~~~~~~i~nakIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~~~a~TIIl 500 (745)
.+|
T Consensus 160 --~~g--------------------------------------------------------------------------- 162 (255)
T d1we3a1 160 --LEG--------------------------------------------------------------------------- 162 (255)
T ss_dssp --CCH---------------------------------------------------------------------------
T ss_pred --CCh---------------------------------------------------------------------------
Confidence 000
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccc
Q psy16434 501 RGATENYMDDIERAVDDGVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILD 580 (745)
Q Consensus 501 rG~t~~IldE~eral~DAL~vlk~~~~~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~D 580 (745)
.-+-+.+++..++..+|+++++|+|.++..+..++...+. +..+|+|..++ .+.||...|++|
T Consensus 163 -------------~~~~g~~iva~Al~~~~~~~~~nag~~~~~~~~~~~~~~~--~~~~g~d~~~g--~~~D~~e~Giid 225 (255)
T d1we3a1 163 -------------DEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETK--NPRYGFNAATG--EFVDMVEAGIVD 225 (255)
T ss_dssp -------------HHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHCCS--CTTEEEETTTT--EEEETTTTTCEE
T ss_pred -------------HHHHHHHHHHHHHhhhHHHHHhhcccccceeeeeeeeccc--CCceeEEeecc--EEeehhhcCCcC
Confidence 0112345556666678899999999999888877766443 45689999999 999999999999
Q ss_pred cccchhhHhhhhhhcchhhccccccee
Q psy16434 581 LYLTKMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 581 s~lVkG~vL~~A~e~a~mil~IDn~kI 607 (745)
|+.|+...+..|.+.+.+++++|....
T Consensus 226 p~~V~~~a~~~A~~~a~~iL~~d~~I~ 252 (255)
T d1we3a1 226 PAKVTRSALQNAASIGALILTTEAVVA 252 (255)
T ss_dssp EHHHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred chHhhHHHHHHHHHHhchHhhcchhhh
Confidence 999999999999999999999997654
|
| >d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Probab=99.71 E-value=1.4e-17 Score=162.95 Aligned_cols=175 Identities=21% Similarity=0.209 Sum_probs=124.1
Q ss_pred chhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhcccccccccccCccccc
Q psy16434 284 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVEN 363 (745)
Q Consensus 284 ~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~ 363 (745)
|+.|+|+.+.+..+++++||||||+++|++++++++.+++..|.||..|.+||+.|++.+++.|++.+.+.... +..
T Consensus 5 ~~ga~lv~~~a~~~~~~~GDGTTTatVLa~~i~~e~~~~i~~g~~p~~i~~Gi~~A~~~v~~~L~~~a~~v~g~--~~~- 81 (180)
T d1sjpa1 5 KIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKIVAGG--GVT- 81 (180)
T ss_dssp HHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBEEETT--TTT-
T ss_pred hHhHHHHHHHHHhhHHHcCCCchHHHHHHHHHHHHHHHHhhCCCChHHHHhhHHHHHHHHHHHHHHHHhhhcch--hhh-
Confidence 34444444444444444444499999999999999999999999999999999999999999999887653211 000
Q ss_pred ccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccceeEeeEEEeecccCCceeeeCce
Q psy16434 364 VTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAK 443 (745)
Q Consensus 364 L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~lv~G~~l~~~~~~~~~~i~nak 443 (745)
+.. +...+.. . .
T Consensus 82 ~l~-a~~al~~----------------------~------------------~--------------------------- 93 (180)
T d1sjpa1 82 LLQ-AAPTLDE----------------------L------------------K--------------------------- 93 (180)
T ss_dssp TTT-TGGGGGG----------------------S------------------C---------------------------
T ss_pred HHH-HHHHHhh----------------------h------------------h---------------------------
Confidence 000 0000000 0 0
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECCeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFK 523 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk 523 (745)
. ++ .=+-+.+++.
T Consensus 94 -------~---------------------------------------------------------~~---~e~~g~~i~~ 106 (180)
T d1sjpa1 94 -------L---------------------------------------------------------EG---DEATGANIVK 106 (180)
T ss_dssp -------C---------------------------------------------------------CT---HHHHHHHHHH
T ss_pred -------h---------------------------------------------------------hh---HHHHHHHHHH
Confidence 0 00 0022456666
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhccc
Q psy16434 524 GITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQ 602 (745)
Q Consensus 524 ~~~~~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~I 602 (745)
.+++.+|++|++|||+++..++.+++.. ..++|||..++ ++.||...||+||..|...+|..|.+.++|+++.
T Consensus 107 ~Al~~p~~~I~~NaG~~~~~v~~~~~~~----~~~~G~d~~~~--~~~dm~e~GIiDP~kV~~~AL~~A~s~a~~~ltt 179 (180)
T d1sjpa1 107 VALEAPLKQIAFNSGLEPGVVAEKVRNL----PAGHGLNAQTG--VYEDLLAAGVADPVKVTRSALQNAASIAGLFLTT 179 (180)
T ss_dssp HHTTHHHHHHHHTTTSCHHHHHHHHHTS----CTTEECCTTTC--CCEETTTTTCEEEHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCCchhhhhhhhcc----ccccCcccccc--ccccHHHcCCcCcHHHHHHHHHhHHHHHHHHHhC
Confidence 6666777999999999999999988653 35789999999 9999999999999999999999999999998864
|
| >d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=99.38 E-value=3.9e-15 Score=133.43 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=88.1
Q ss_pred cCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCC--CCCCCccceEEEEccCCCcccceeEeeEEEeeccc
Q psy16434 357 DVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDG--SSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVE 433 (745)
Q Consensus 357 ~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~--~~~~dl~~I~I~ki~Ggs~~dS~lv~G~~l~~~~~ 433 (745)
+.+|++.|.++|+|+|+||+.+. .++|++|+++|+..+.+.. +..+|+++|+|+|+.||++.||++++|++|++.+
T Consensus 2 d~~D~e~L~~va~Tsl~~K~~~~~~d~la~l~v~Av~~v~~~~~~~~~~d~~~Iki~K~~Ggsv~dS~lv~G~vl~k~~- 80 (107)
T d1q3qa3 2 DPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVKAVTILIRG- 80 (107)
T ss_dssp CTTCHHHHHHHHHHHSCSSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGCEEESSEEEEEEE-
T ss_pred CccHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhcccCCCcccchHHEEEEEecCCChhhCEEEccEEEEccC-
Confidence 34678899999999999999974 6999999999999997642 2347888999999999999999999999999865
Q ss_pred CCceeeeCceEEEeccCCCccccc
Q psy16434 434 GDITKQTKAKIAVYTCPVDIATTE 457 (745)
Q Consensus 434 ~~~~~i~nakIlil~~~Le~~k~e 457 (745)
.+|+.++|+||++++++|++...+
T Consensus 81 ~mp~~i~n~ki~lld~~le~~~~~ 104 (107)
T d1q3qa3 81 GTEHVIDEVERALEDAVKVVKDVM 104 (107)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCcCEeeccCcHHHHhhc
Confidence 789999999999999999987654
|
| >d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Probab=99.35 E-value=1.9e-14 Score=128.52 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=86.8
Q ss_pred ccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCC--CCCCCccceEEEEccCCCcccceeEeeEEEeecccCCc
Q psy16434 360 NVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDG--SSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGDI 436 (745)
Q Consensus 360 ~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~--~~~~dl~~I~I~ki~Ggs~~dS~lv~G~~l~~~~~~~~ 436 (745)
|++.|.++|+|+|+||+.+. .++|++|+++|+..+.+.. ...+|+++|+|.++.||++.||++++|+++++.+ .+|
T Consensus 2 D~e~L~~va~Tsl~~K~~~~~~d~ls~l~vdAv~~v~~~~~g~~~~d~~~I~i~k~~Ggs~~dS~lv~G~vl~k~~-~mp 80 (105)
T d1a6da3 2 DDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISAVSILIRG-GTD 80 (105)
T ss_dssp CHHHHHHHHHHHTTTSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTCEEESCEEEEECC-SSS
T ss_pred cHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHhccccCCCceecHHHhhhhhccCCChhheeeeeccceeccC-CCC
Confidence 56789999999999999975 6999999999999997542 2348999999999999999999999999998854 689
Q ss_pred eeeeCceEEEeccCCCcccccc
Q psy16434 437 TKQTKAKIAVYTCPVDIATTET 458 (745)
Q Consensus 437 ~~i~nakIlil~~~Le~~k~e~ 458 (745)
+.++|+||++++++++..+++.
T Consensus 81 ~~~~~~kialld~~~~~~~te~ 102 (105)
T d1a6da3 81 HVVSEVERALNDAIRVVAITKE 102 (105)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcCeeEecchhhcccccc
Confidence 9999999999999999887653
|
| >d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Probab=99.19 E-value=7.7e-14 Score=124.86 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=78.9
Q ss_pred cccccccceeeeccccccCC-ChhhHHHHHHHHHHhhcCCC--CCCCCccceEEEEccCCCcccceeEeeEEE---eecc
Q psy16434 359 RNVENVTKGIKSAIMSKQYG-NEDFLTDLITKACVSILPDG--SSSFNVDNVRITKILGSGLFNSEIVQGMVF---KRSV 432 (745)
Q Consensus 359 ~~~~~L~~va~tsl~sK~~~-~~~~ls~LivdAv~~v~~~~--~~~~dl~~I~I~ki~Ggs~~dS~lv~G~~l---~~~~ 432 (745)
+|++.|.++|+|+|+||+.+ +.++||+|+++|+..+.+.. ...+|+++|+|+|+.||++.||++++|+++ +++.
T Consensus 3 ~D~e~L~~va~Tsl~~K~~~~~~d~la~l~v~Av~~v~~~~~~~~~~d~~~IkI~k~~Ggs~~dS~li~G~v~~~~~~~k 82 (107)
T d1a6db3 3 DEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINKAVSILVRGET 82 (107)
T ss_dssp THHHHHHHHHHHHHTTSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGCEEESSCEEEEEEESS
T ss_pred chHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHhhcccCCCcccCHHHeEEEeecCCChhhcEEEeccceeeccCCc
Confidence 46788999999999999987 47999999999999997542 235788899999999999999999999766 3333
Q ss_pred ----cCCceeeeCceEEEeccCCC
Q psy16434 433 ----EGDITKQTKAKIAVYTCPVD 452 (745)
Q Consensus 433 ----~~~~~~i~nakIlil~~~Le 452 (745)
..||++++|+ |++++|+||
T Consensus 83 ~~~~~~Mpk~i~n~-I~lld~~LE 105 (107)
T d1a6db3 83 EHVVDEMERSITDS-LHVVASALE 105 (107)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred eeccCCCCccccCc-EEEEecCCc
Confidence 2479999998 999999986
|
| >d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Mouse (Mus musculus), gamma chain [TaxId: 10090]
Probab=98.95 E-value=7.1e-10 Score=106.16 Aligned_cols=83 Identities=14% Similarity=0.310 Sum_probs=71.3
Q ss_pred cceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC-------------------------------------
Q psy16434 419 NSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK------------------------------------- 459 (745)
Q Consensus 419 dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k------------------------------------- 459 (745)
||++++|++|++.+.+ ||+.++||||++++++|++.+++.+
T Consensus 1 DS~li~Gvvi~k~~~~~~m~~~i~~~kIlll~~~le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vv 80 (168)
T d1gmla_ 1 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVV 80 (168)
T ss_dssp CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSEE
T ss_pred CcEEEEEEEEecccCCcCCccccCCceEEEEeccccccccccccceecCCHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence 7899999999999876 5999999999999999999988642
Q ss_pred ---------------------------------------------CCCCcccccc-cccEEEEEECCeeEEEEEeccccc
Q psy16434 460 ---------------------------------------------TPPAASELGY-ADSVAVDELGDTAVVVFKLEAAES 493 (745)
Q Consensus 460 ---------------------------------------------~~p~a~~LG~-a~~vq~~eiGdtsvti~~g~~l~~ 493 (745)
+++++.+||. |+.++++.+|++.+++|+|++. +
T Consensus 81 ~~~~~I~~~a~~~L~~~gI~~~~rv~~~dl~ria~~tga~iv~si~~l~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-~ 159 (168)
T d1gmla_ 81 ITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKD-P 159 (168)
T ss_dssp EESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEEESS-T
T ss_pred EEcCCCCHHHHHHHHHCCCeeeccCCHHHHHHHHHHHCCceeCchhhcCcccccccccEEEEEEECCeEEEEEEecCC-C
Confidence 7788999999 4667788999999999999987 7
Q ss_pred ceeEEEEcC
Q psy16434 494 RIATLVIRG 502 (745)
Q Consensus 494 ~a~TIIlrG 502 (745)
.++||++||
T Consensus 160 ~~~TIllRG 168 (168)
T d1gmla_ 160 KACTILLRG 168 (168)
T ss_dssp TSCEEEEEC
T ss_pred CEEEEEEeC
Confidence 899999998
|
| >d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Probab=98.47 E-value=4.7e-08 Score=91.81 Aligned_cols=68 Identities=24% Similarity=0.273 Sum_probs=61.4
Q ss_pred EeeEEEeecccC--CceeeeCceEEEeccCCCccccccC-----------------------------------------
Q psy16434 423 VQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK----------------------------------------- 459 (745)
Q Consensus 423 v~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k----------------------------------------- 459 (745)
++|++|++.+.| ||++++||||++++++||+.+++.+
T Consensus 1 i~Gvv~~k~~~~~~mp~~i~~~kI~ll~~~Le~~k~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~nvvl~~~ 80 (152)
T d1assa_ 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQK 80 (152)
T ss_dssp CCCEEESCCCSCTTSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEESS
T ss_pred CeEEEEeCccCCCCCCccccCceEEEEecccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEec
Confidence 579999999865 6999999999999999999887421
Q ss_pred -----------------------------------------CCCCcccccccccEEEEEECCeeEEEEEecc
Q psy16434 460 -----------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEA 490 (745)
Q Consensus 460 -----------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~ 490 (745)
++++++.||+|+.++++++|++++++|+||+
T Consensus 81 ~I~~~a~~~l~k~gI~~v~~v~~~dl~ria~atGa~iv~s~~~l~~~~LG~~~~v~~~~ig~~~~~~~~GCk 152 (152)
T d1assa_ 81 GIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCK 152 (152)
T ss_dssp CBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEESCC
T ss_pred cccHHHHHHHHHcCCccccCCCHHHHHHHHHHhCCceeCCcccCCcccCeeeeEEEEEEECCEEEEEEecCC
Confidence 7889999999999999999999999999985
|
| >d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=98.42 E-value=1.5e-07 Score=88.33 Aligned_cols=68 Identities=24% Similarity=0.341 Sum_probs=61.9
Q ss_pred eeEEEeecccC--CceeeeCceEEEeccCCCccccccC------------------------------------------
Q psy16434 424 QGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK------------------------------------------ 459 (745)
Q Consensus 424 ~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k------------------------------------------ 459 (745)
+|++|++.+.| ||++++||||++++++||+.+++.+
T Consensus 1 kGvv~~k~~~~~~mp~~i~n~kIlll~~~Le~~k~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~nvvl~~k~ 80 (153)
T d1q3qa2 1 RGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKG 80 (153)
T ss_dssp SSEEESCCCSSTTSCSEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSC
T ss_pred CeEEEeCCCCCccCCcccCCccEEEEecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHhccCccceeecCC
Confidence 49999999865 6999999999999999999998643
Q ss_pred ----------------------------------------CCCCcccccccccEEEEEECCeeEEEEEeccc
Q psy16434 460 ----------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAA 491 (745)
Q Consensus 460 ----------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l 491 (745)
+++++..||.|+.++++++|++++++|+||+.
T Consensus 81 I~~~a~~~l~~~gI~~v~~v~~~dl~ria~~tGa~iv~si~~l~~~~LG~~~~~~~~~~g~~~~~~~~gc~~ 152 (153)
T d1q3qa2 81 IDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKN 152 (153)
T ss_dssp BCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEECCSS
T ss_pred CcHHHHHHHHHcCCceeccCCHHHHHHHHHhhCCEEecchhhCCcccCeeeEEEEEEEECCeeEEEEeCCCC
Confidence 77899999999999999999999999999974
|
| >d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Probab=98.41 E-value=1.4e-07 Score=88.50 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=61.3
Q ss_pred eEEEeecccC--CceeeeCceEEEeccCCCccccccC-------------------------------------------
Q psy16434 425 GMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK------------------------------------------- 459 (745)
Q Consensus 425 G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k------------------------------------------- 459 (745)
|++|++++.| ||++++|||||+++++||+.+++.+
T Consensus 1 Gvv~~k~~~~~~mpk~i~~~kIlll~~~Le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~nvv~~~k~I 80 (152)
T d1a6db2 1 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGI 80 (152)
T ss_dssp EEEESCCCSSTTSCSEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCB
T ss_pred CEEEeccCCCCCCCCcccCCcEEEEecccccccccccceeeecCHHHHHHHHHHHHHHHHHHHHHHhccCCceEEecCCC
Confidence 8999999975 6999999999999999999988642
Q ss_pred ---------------------------------------CCCCcccccccccEEEEEECCeeEEEEEeccc
Q psy16434 460 ---------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAA 491 (745)
Q Consensus 460 ---------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l 491 (745)
+++++++||+|+.+++.++|++++++|+||+.
T Consensus 81 dd~a~~~l~k~gI~~v~~v~~~dl~rla~~tGa~iv~s~~~l~~~~LG~~~~v~~~~~g~~~~~~~~gc~n 151 (152)
T d1a6db2 81 DDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKN 151 (152)
T ss_dssp CHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESS
T ss_pred cHHHHHHHHHcCcchhccCCHHHHHHHHHHhCCeeecchhhCCcccCcCceEEEEEEECCEEEEEEeCCCC
Confidence 77899999999999999999999999999974
|
| >d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.22 E-value=0.00017 Score=61.95 Aligned_cols=92 Identities=17% Similarity=0.262 Sum_probs=69.1
Q ss_pred cccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccc-eeEeeEEEeecccCCce
Q psy16434 359 RNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNS-EIVQGMVFKRSVEGDIT 437 (745)
Q Consensus 359 ~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS-~lv~G~~l~~~~~~~~~ 437 (745)
.+.+.+.++|..|.|+ ++.+++|+.+|+.+++.+ |. |.|++ |.+.+.+ ++++||.|+++
T Consensus 3 ~~~~~i~~VAtISan~-----d~~IG~lIa~a~~~Vg~~--Gv-----itvEe--~~~~~t~~~ivEG~~~~~G------ 62 (97)
T d1ioka3 3 NDSSEVAQVGTISANG-----ESFIGQQIAEAMQRVGNE--GV-----ITVEE--NKGMETEVEVVERVAKLAG------ 62 (97)
T ss_dssp CSTTTTTHHHHHTTTT-----CHHHHHHHHHHHHHHCTT--SC-----CCCEE--CSSSCCEEEEEHHHHTTSS------
T ss_pred CCHHHhheeeeeecCC-----chHHHHHHHHHHHHhCCC--ce-----EEecc--ccchhhhhhHhhhhhhhhc------
Confidence 3566789999988775 678999999999999976 44 44443 3344443 78888855433
Q ss_pred eeeCceEEEeccCCCccccccCCCCCcccccccccEEEEEECCeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHH
Q psy16434 438 KQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDD 517 (745)
Q Consensus 438 ~i~nakIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~D 517 (745)
....+.+.+.+..+++|.+..++|
T Consensus 63 --------------------------------------------------------yiS~~fv~~~t~~E~~ekk~~veD 86 (97)
T d1ioka3 63 --------------------------------------------------------GVAVIRVGGMTEIEVKERKDRVDD 86 (97)
T ss_dssp --------------------------------------------------------CEEEEEECCSSHHHHHHHHHHHHH
T ss_pred --------------------------------------------------------cccccccCCCceeeeeeccceeec
Confidence 334455667788999999999999
Q ss_pred HHHHHHHHH
Q psy16434 518 GVNTFKGIT 526 (745)
Q Consensus 518 AL~vlk~~~ 526 (745)
||+++|+++
T Consensus 87 Al~a~raa~ 95 (97)
T d1ioka3 87 ALNATRAAV 95 (97)
T ss_dssp HHHHHHHHH
T ss_pred CHHHHHHHh
Confidence 999999876
|
| >d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=97.17 E-value=8e-06 Score=71.89 Aligned_cols=57 Identities=12% Similarity=0.052 Sum_probs=50.2
Q ss_pred eeecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccceeeeeccCccccccccc
Q psy16434 561 FDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETK 622 (745)
Q Consensus 561 IDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~ 622 (745)
+|+.+ +++.++.|+++.||.+++|+++.+ +..|+++++++++++++||||+..++++
T Consensus 50 ~d~~~--Iki~K~~Ggsv~dS~lv~G~vl~k---~~~mp~~i~n~ki~lld~~le~~~~~~~ 106 (107)
T d1q3qa3 50 VDLDN--IKFEKKAGEGVEESELVKAVTILI---RGGTEHVIDEVERALEDAVKVVKDVMED 106 (107)
T ss_dssp CCGGG--EEEEEEEBSCGGGCEEESSEEEEE---EESSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cchHH--EEEEEecCCChhhCEEEccEEEEc---cCCCCcccCCcCEeeccCcHHHHhhccC
Confidence 45443 599999999999999999999986 5689999999999999999999887764
|
| >d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.00034 Score=60.14 Aligned_cols=93 Identities=16% Similarity=0.255 Sum_probs=69.8
Q ss_pred cccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCccc-ceeEeeEEEeecccCCce
Q psy16434 359 RNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN-SEIVQGMVFKRSVEGDIT 437 (745)
Q Consensus 359 ~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~d-S~lv~G~~l~~~~~~~~~ 437 (745)
.+.+.+.++|..|.|+ ++.+++|+++|+.+++.+ |. |.|+. |.+..+ .++++||.|++++
T Consensus 3 ~~~~~i~~VAtISan~-----D~~iG~lIa~a~~~vg~d--Gv-----itvee--~~~~~~~~~ivEG~~~d~G~----- 63 (97)
T d1kp8a3 3 SDSKAIAQVGTISANS-----DETVGKLIAEAMDKVGKE--GV-----ITVED--GTGLQDELDVVERVAKLAGG----- 63 (97)
T ss_dssp CSHHHHHHHHHHHTTS-----CHHHHHHHHHHHHHHCTT--SE-----EEEEC--CSSSSCEEEEEHHHHHHHHC-----
T ss_pred CCHHHHhhheeEecCC-----cHHHHHHHHHHHHHhccc--ce-----EEEec--cccchhHHHHHHHHHhhcCC-----
Confidence 3567889999999875 788999999999999976 44 55653 444444 3788898666544
Q ss_pred eeeCceEEEeccCCCccccccCCCCCcccccccccEEEEEECCeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHH
Q psy16434 438 KQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDD 517 (745)
Q Consensus 438 ~i~nakIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~D 517 (745)
...+.+.+.++..+++.+..++|
T Consensus 64 ---------------------------------------------------------vS~~fvt~~te~E~~ekk~~veD 86 (97)
T d1kp8a3 64 ---------------------------------------------------------VAVIKVGAATEVEMKEKKARVED 86 (97)
T ss_dssp ---------------------------------------------------------EEEEECCCSSHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------ccceeecCcchhhhhhceeEEec
Confidence 23334445577889999999999
Q ss_pred HHHHHHHHHH
Q psy16434 518 GVNTFKGITK 527 (745)
Q Consensus 518 AL~vlk~~~~ 527 (745)
||++++++++
T Consensus 87 aL~a~~aA~~ 96 (97)
T d1kp8a3 87 ALHATRAAVE 96 (97)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHhc
Confidence 9999998763
|
| >d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Probab=96.80 E-value=2.8e-05 Score=68.14 Aligned_cols=58 Identities=14% Similarity=0.062 Sum_probs=51.4
Q ss_pred eeecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccceeeeeccCcccccccccc
Q psy16434 561 FDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKG 623 (745)
Q Consensus 561 IDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~ 623 (745)
+|+++ +++.++.|+++.||.+|+|+++.+ +..|++++.+++|+++++++++.++++++
T Consensus 47 ~d~~~--I~i~k~~Ggs~~dS~lv~G~vl~k---~~~mp~~~~~~kialld~~~~~~~te~~~ 104 (105)
T d1a6da3 47 VDTAN--IKVDKKNGGSVNDTQFISAVSILI---RGGTDHVVSEVERALNDAIRVVAITKEDG 104 (105)
T ss_dssp CCGGG--EEEEECCCSCSTTCEEESCEEEEE---CCSSSTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ecHHH--hhhhhccCCChhheeeeeccceec---cCCCCcccCCcCeeEecchhhcccccccC
Confidence 45554 499999999999999999999975 56899999999999999999999988764
|
| >d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Probab=96.61 E-value=0.00011 Score=62.37 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=55.2
Q ss_pred cccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcc-cceeEeeEEEeecccCC--
Q psy16434 359 RNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLF-NSEIVQGMVFKRSVEGD-- 435 (745)
Q Consensus 359 ~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~-dS~lv~G~~l~~~~~~~-- 435 (745)
.+++.+.++|..|.+ ++.+++|+++|+.+++++ |. |.++... +.. ..++++|+.|++++.++
T Consensus 3 ~~~e~i~~VAtISa~------D~~iG~lIa~A~~kVG~d--Gv-----ItvEe~~--~~~t~le~veG~~~d~Gy~Sp~f 67 (89)
T d1sjpa3 3 ETKEQIAATAAISAG------DQSIGDLIAEAMDKVGNE--GV-----ITVEESN--TFGLQLELTEVAVIKAGAATEVE 67 (89)
T ss_dssp CSHHHHHHHHHHHTT------CHHHHHHHHHHHHHSCTT--SC-----EEEEEES--SSSEEEEEESEEEEEEECSSHHH
T ss_pred CCHHHHHHhhheecC------CHHHHHHHHHHHHhcCCC--Cc-----eEEEecc--ccceEEEEEEEEEecCCccCceE
Confidence 355678888887754 578999999999999976 44 6666544 344 45899999999999875
Q ss_pred ----ce----eeeCceEEEec
Q psy16434 436 ----IT----KQTKAKIAVYT 448 (745)
Q Consensus 436 ----~~----~i~nakIlil~ 448 (745)
+. .++||+||+.+
T Consensus 68 vtd~k~r~e~~l~~p~ili~d 88 (89)
T d1sjpa3 68 LKERKHRIEDAVRNAKAAVEE 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred EcccHHhhHHHHhCceEeeec
Confidence 12 26678877654
|
| >d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Probab=96.00 E-value=0.00027 Score=61.80 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=44.6
Q ss_pred eeeecCCCcceeecccccccccccchhhHh-----hhhhhcchhhcccccceeeeeccCcc
Q psy16434 560 GFDINGENSSVIDAAEAGILDLYLTKMWAL-----KYATSAANTILQQTKAKIAVYTCPVD 615 (745)
Q Consensus 560 GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL-----~~A~e~a~mil~IDn~kIlll~~~Le 615 (745)
-+|..+ ++|.++.|+++.||++|+|+++ .+...+..|+++++|+ |++++||||
T Consensus 48 ~~d~~~--IkI~k~~Ggs~~dS~li~G~v~~~~~~~k~~~~~~Mpk~i~n~-I~lld~~LE 105 (107)
T d1a6db3 48 YVDFDN--IQVVKKQGGAIDDTQLINKAVSILVRGETEHVVDEMERSITDS-LHVVASALE 105 (107)
T ss_dssp EECGGG--EEEEEEESSCGGGCEEESSCEEEEEEESSHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred ccCHHH--eEEEeecCCChhhcEEEeccceeeccCCceeccCCCCccccCc-EEEEecCCc
Confidence 345544 4999999999999999999887 4555568999999998 999999997
|
| >d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Probab=95.39 E-value=0.024 Score=53.59 Aligned_cols=102 Identities=12% Similarity=0.127 Sum_probs=77.8
Q ss_pred cchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHH
Q psy16434 595 AANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLN 674 (745)
Q Consensus 595 ~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~ 674 (745)
...|--.++||.|++.+..+ ++.+++.+++ +...+.+--+++.-.+|+..|+..|.
T Consensus 17 ~~~~~~~~~~p~ili~d~ki-------------~~~~~i~p~L-----------e~~~~~~rPLlIIA~di~~~aL~~Lv 72 (184)
T d1sjpa2 17 PERQEAVLEDPYILLVSSKV-------------STVKDLLPLL-----------EKVIGAGKPLLIIAEDVEGEALSTLV 72 (184)
T ss_dssp TTTTBEEEESCEEEEESSCB-------------CCSTTTHHHH-----------HHHHTTTCCEEEEESCBCHHHHHHHH
T ss_pred CCCCEEEecCCEEEEecCcc-------------CcHHHHHHHH-----------HHhhccCCcEEEEcchhhHHHHHHHH
Confidence 34556677899999999876 3445555554 34555665688888899999999987
Q ss_pred Hc------CCeEEEeCC-----HHHHHHHHHHhCCeecc-----cCCCCCCCCCcccCCceE
Q psy16434 675 KY------GLMGVRLNS-----KFDLRRLCKAVNATALP-----RLVSTYIKMPSFCPAPPV 720 (745)
Q Consensus 675 k~------gIl~ir~v~-----k~dLeRIaraTGA~ivs-----sld~l~~~~LG~c~~~~~ 720 (745)
.+ .+.+|+-.. ++-|+-||-.|||++++ .+++...+.||+|+++.+
T Consensus 73 ~N~~~g~l~v~aVkaPgfG~~r~~~L~DlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~kv~i 134 (184)
T d1sjpa2 73 VNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVV 134 (184)
T ss_dssp HHHHTTSSCCEEEECSSCHHHHHHHHHHHHHHHTCCEEBTTTTBCSSSCCTTTSEEEEEEEE
T ss_pred HHHhcCchheecccCCCCCcchHHHHHHHHHHhCCEEecccccccccccchhhCCeeeEEEE
Confidence 63 356677655 67799999999999997 556778889999999988
|
| >d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.10 E-value=0.015 Score=54.67 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=27.0
Q ss_pred eeEEEeecccCC---------ceeeeCceEEEeccCCCcccc
Q psy16434 424 QGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIATT 456 (745)
Q Consensus 424 ~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k~ 456 (745)
+||.|++||.++ ...++||+||+++.+|+..+.
T Consensus 1 EG~~~d~Gy~SpyFvtd~~~~~~~l~np~ILi~d~kI~~~~~ 42 (176)
T d1ioka2 1 EGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQP 42 (176)
T ss_dssp CCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBCCCCC
T ss_pred CCcccccCccCccceeCCcCCEEEeeCcEEEEEccccCcHHH
Confidence 699999999764 457899999999998776544
|
| >d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.015 Score=55.43 Aligned_cols=102 Identities=12% Similarity=0.131 Sum_probs=76.6
Q ss_pred cchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHH
Q psy16434 595 AANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLN 674 (745)
Q Consensus 595 ~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~ 674 (745)
...|.-..++|.|++.+..+ ++.+++.++++. ..+.+--+++.-.+|++.|+..|.
T Consensus 25 ~~~~~~~l~~p~ILitd~kI-------------~~~~~i~p~Le~-----------~~~~~~pLlIIA~di~~~aL~~Lv 80 (193)
T d1kida_ 25 PETGAVELESPFILLADKKI-------------SNIREMLPVLEA-----------VAKAGKPLLIIAEDVEGEALATLV 80 (193)
T ss_dssp TTTTBEEEESCEEEEBSSEE-------------CCHHHHHHHHHH-----------HHHHTCCEEEEESEECHHHHHHHH
T ss_pred CCCCEEEecCcEEEEEcCCc-------------ccHHHHHHHHHH-----------HHhhCCcEEEEeccccHHHHHHHH
Confidence 34556678899999988764 677788777663 333444577777799999999987
Q ss_pred Hc------CCeEEEeCC-----HHHHHHHHHHhCCeeccc-----CCCCCCCCCcccCCceE
Q psy16434 675 KY------GLMGVRLNS-----KFDLRRLCKAVNATALPR-----LVSTYIKMPSFCPAPPV 720 (745)
Q Consensus 675 k~------gIl~ir~v~-----k~dLeRIaraTGA~ivss-----ld~l~~~~LG~c~~~~~ 720 (745)
.+ .+-||+-.. ++.|+.||-.|||++++. +++...+.||+|+++.+
T Consensus 81 ~N~~kg~l~v~aVkaPgfG~~r~~~LeDlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~kv~i 142 (193)
T d1kida_ 81 VNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVI 142 (193)
T ss_dssp HHHHTTSCCEEEEECCSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEE
T ss_pred HhhhccCcceeeccCCCcChhHHHHHHHHHHHcCCEEechhcccccccCCHhHcCcccEEEE
Confidence 64 345555533 467999999999999985 45677788999999987
|
| >d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Escherichia coli [TaxId: 562]
Probab=94.86 E-value=0.012 Score=56.18 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=29.7
Q ss_pred ceeEeeEEEeecccCC---------ceeeeCceEEEeccCCCccc
Q psy16434 420 SEIVQGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIAT 455 (745)
Q Consensus 420 S~lv~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k 455 (745)
-++.+||.|++||.++ ...++||+||+++.+++..+
T Consensus 4 ~~~tEG~~~d~Gy~SpyFvtd~~~~~~~l~~p~ILitd~kI~~~~ 48 (193)
T d1kida_ 4 PRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIR 48 (193)
T ss_dssp CSCCCCEEESCCCSCGGGCCBTTTTBEEEESCEEEEBSSEECCHH
T ss_pred ccccCCeeecCCcCCccceeCCCCCEEEecCcEEEEEcCCcccHH
Confidence 4678999999999764 55789999999999877544
|
| >d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Thermus thermophilus [TaxId: 274]
Probab=94.39 E-value=0.049 Score=49.54 Aligned_cols=102 Identities=17% Similarity=0.168 Sum_probs=76.7
Q ss_pred cchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHH
Q psy16434 595 AANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLN 674 (745)
Q Consensus 595 ~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~ 674 (745)
...|.-..+||.|++.+..+ ++.+++.++++ ...+.+--+++.-.+|++.|+..|.
T Consensus 17 ~~~~~~~l~~p~ILi~d~kI-------------~~~~~ilp~Le-----------~~~~~~rPLlIIA~di~~eaL~~Lv 72 (145)
T d1srva_ 17 PETMEAVLEDAFILIVEKKV-------------SNVRELLPILE-----------QVAQTGKPLLIIAEDVEGEALATLV 72 (145)
T ss_dssp TTTTBEEEEEEEEEEESSEE-------------CCHHHHHHHHH-----------HHHTTTCCEEEEESEECHHHHHHHH
T ss_pred cccCEEEecCceeeeccccc-------------ccHHHHHHHHH-----------HHHHhCCcEEEEeCccCHHHHHHHH
Confidence 34566678899999988764 56677766655 3444554466666799999999998
Q ss_pred Hc------CCeEEEeCC-----HHHHHHHHHHhCCeeccc-----CCCCCCCCCcccCCceE
Q psy16434 675 KY------GLMGVRLNS-----KFDLRRLCKAVNATALPR-----LVSTYIKMPSFCPAPPV 720 (745)
Q Consensus 675 k~------gIl~ir~v~-----k~dLeRIaraTGA~ivss-----ld~l~~~~LG~c~~~~~ 720 (745)
.+ .+-||+-.. ++.|+.||-.|||++++. +++...+.||+|+++.+
T Consensus 73 ~N~~~g~l~v~aVkaP~fG~~r~~~L~DlAi~tGa~v~~~~~g~~l~~~~~~~LGsa~kv~v 134 (145)
T d1srva_ 73 VNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRI 134 (145)
T ss_dssp HHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEE
T ss_pred HHHhcCceEEEEEeCCCccHHHHHHHhhhhhhhCCEeeccccCcccccCCHHHCCcccEEEE
Confidence 53 356677665 678999999999999854 44567788999999987
|
| >d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Thermus thermophilus [TaxId: 274]
Probab=94.03 E-value=0.014 Score=48.57 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=44.5
Q ss_pred ccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCccc-ceeEeeEEEeeccc
Q psy16434 360 NVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN-SEIVQGMVFKRSVE 433 (745)
Q Consensus 360 ~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~d-S~lv~G~~l~~~~~ 433 (745)
+++.|.++|..|.| ++.+++|+++|+.+++++ |. |.|+. |.+... .++++|+.+++++.
T Consensus 2 d~~~i~~VAtISAn------D~~iG~lIAeA~~kVG~d--Gv-----ItVEe--s~t~~t~levveG~~~~~s~~ 61 (86)
T d1we3a3 2 DRKAIEEVATISAN------DPEVGKLIADAMEKVGKE--GI-----ITVEE--SKSLETELKFVGVAVIRVGAA 61 (86)
T ss_dssp SHHHHHHHHHHHHT------CHHHHHHHHHHHHTTCTT--SE-----EEEEE--CSSSSCEEEEECEEEEEECCS
T ss_pred CHHHHhhheeeecC------CHHHHHHHHHHHHHcCCC--ce-----EEEEe--cCCCCeEEEEEEeeeccccee
Confidence 45678888887764 578999999999999987 54 66664 444443 48999999987763
|
| >d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Probab=93.54 E-value=0.079 Score=49.92 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=26.3
Q ss_pred eEEEeecccCC---------ceeeeCceEEEeccCCCcccc
Q psy16434 425 GMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIATT 456 (745)
Q Consensus 425 G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k~ 456 (745)
||.|++||.++ ...++||+||+++.+++..+.
T Consensus 1 G~~~d~Gy~Sp~Fvt~~~~~~~~~~~p~ili~d~ki~~~~~ 41 (184)
T d1sjpa2 1 GMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKD 41 (184)
T ss_dssp EEEESCCBSCGGGCSBTTTTBEEEESCEEEEESSCBCCSTT
T ss_pred CCccCcCccCcccccCCCCCEEEecCCEEEEecCccCcHHH
Confidence 89999999763 567899999999998876554
|
| >d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Paracoccus denitrificans [TaxId: 266]
Probab=92.44 E-value=0.035 Score=52.10 Aligned_cols=102 Identities=14% Similarity=0.144 Sum_probs=53.1
Q ss_pred cchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHH
Q psy16434 595 AANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLN 674 (745)
Q Consensus 595 ~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~ 674 (745)
...|.-.++||.|++.+..++ +++++.++++ ...+.+--+++.-.+|+..|+..|.
T Consensus 18 ~~~~~~~l~np~ILi~d~kI~-------------~~~~i~p~Le-----------~~~~~~~PLlIIA~di~~~aL~~Lv 73 (176)
T d1ioka2 18 ADKMIAELEDAYILLHEKKLS-------------SLQPMVPLLE-----------SVIQSQKPLLIVAEDVEGEALATLV 73 (176)
T ss_dssp SSSSCEEEEEEEEEECSSCBC-------------CCCC----------------------CCCCEEEESCBC--------
T ss_pred CcCCEEEeeCcEEEEEccccC-------------cHHHHHHHHH-----------HHHhcCCcEEEEecCCCHHHHHHHH
Confidence 345666788999999998874 3344555443 2333444566666799999999998
Q ss_pred HcC------CeEEEeCC-----HHHHHHHHHHhCCeeccc-----CCCCCCCCCcccCCceE
Q psy16434 675 KYG------LMGVRLNS-----KFDLRRLCKAVNATALPR-----LVSTYIKMPSFCPAPPV 720 (745)
Q Consensus 675 k~g------Il~ir~v~-----k~dLeRIaraTGA~ivss-----ld~l~~~~LG~c~~~~~ 720 (745)
.+. +.+|+-.. ++-|+-||-+|||++++. ++....+.||+|+++.+
T Consensus 74 ~N~~~g~l~v~aVkaP~fG~~r~~~LeDlA~~tGa~vi~~~~g~~l~~~~~~~LG~a~kv~v 135 (176)
T d1ioka2 74 VNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSI 135 (176)
T ss_dssp ---------CEEEECSCCTTHHHHHHHHHHHHHTC---------------CTTSEEEEEEEE
T ss_pred HHHhcCCceEEEEeCCCCCcHHHHHHHHHHHhhCCEEEecccCCChhhCCHHHCceeeEEEE
Confidence 763 34555443 567999999999999965 56678889999999988
|
| >d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Thermus thermophilus [TaxId: 274]
Probab=92.03 E-value=0.024 Score=51.63 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=25.4
Q ss_pred eEEEeecccCC---------ceeeeCceEEEeccCCCccc
Q psy16434 425 GMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIAT 455 (745)
Q Consensus 425 G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k 455 (745)
||.|++||.++ ..+++||+||+++.+|+..+
T Consensus 1 G~~~d~Gy~Sp~Fvtd~~~~~~~l~~p~ILi~d~kI~~~~ 40 (145)
T d1srva_ 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVR 40 (145)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEECCHH
T ss_pred CCccccCccCCccccCcccCEEEecCceeeecccccccHH
Confidence 88999999763 56799999999998877444
|