Psyllid ID: psy16436

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
Protein Sequence
MTLAVYNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDYPKVDGEDMLPIPCTNIAIVGLSVEANSPKGWVKLLESSHCCITKQAGPVPPGIF
Secondary Structure (PSIPRED)
ccEEEEccccccEEEEEccccccccEEEEEEEEEEEcccccccccccccccccccccEEccHHHccccccHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccEEEcccccccccEEEEEEccEEccccccccccccccccccccEEEEEEEEEccccccHHHHHcccccEEEccccccccccc
Coil and Loop (DISEMBL)
mtlavynlesdslrlqplgydrnqsaFWYFYGtrlyredypkvdgedmlpipctniaIVGLSveanspkgWVKLLESShccitkqagpvppgif
Flexible Loop (DISEMBL)
mtlavynlesdslrlqplgydrnqSAFWYFYGTRLYREDYPKVDGEDMLPIPCTNIAIVGLSVEANSPKGWVKLLESSHccitkqagpvppgif
Low Complexity Region (SEG)
MTLAVYNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDYPKVDGEDMLPIPCTNIAIVGLSVEANSPKGWVKLLESSHCCITKQAGPVPPGIF
Disordered region (IsUnstruct)
*****Y******LRLQPLGYDRNQSAFWYFYGTRLYREDYPKVDGEDMLPIPCTNIAIVGLSVEANSPKGWVKLLESSHCCITK**********
Disordered Region (DISOPRED)
***A***LESDSLRLQPLGYDRNQSAFWYFYGTRLY***************************************************P*P****
Disordered Region (DISEMBL)
MTLAVYNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDYPKVDGEDMLPIPCTNIAIVGLSVEANSPKGWVKLLESSHCCITKQAGPVPPGIF
Disordered Region (DISPRO)
*TLAVYNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDYPKVDGEDMLPIPCTNIAIVGLSVEANSPKGWVKLLESSHCCITKQAGPVPPGIF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTLAVYNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDYPKVDGEDMLPIPCTNIAIVGLSVEANSPKGWVKLLESSHCCITKQAGPVPPGIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	94	2.2.26 [Sep-21-2011]
Q9BXF3	1484	Cat eye syndrome critical	yes	N/A	0.372	0.023	0.542	3e-06

>sp|Q9BXF3|CECR2_HUMAN Cat eye syndrome critical region protein 2 OS=Homo sapiens GN=CECR2 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 29/35 (82%)

Query: 5   VYNLESDSLRLQPLGYDRNQSAFWYFYGTRLYRED 39
           +  L++DSLR++PLG D + + +WYFYGTR+Y+ED
Sbjct: 134 LKGLDADSLRVEPLGEDNSGALYWYFYGTRMYKED 168

Part of the CERF (CECR2-containing-remodeling factor) complex, which facilitates the perturbation of chromatin structure in an ATP-dependent manner. May be involved through its interaction with LRPPRC in the integration of cytoskeletal network with vesicular trafficking, nucleocytosolic shuttling, transcription, chromosome remodeling and cytokinesis.
Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
193674159	1560	PREDICTED: hypothetical protein LOC10016	0.393	0.023	0.756	3e-10
332021653	2230	Cat eye syndrome critical region protein	0.393	0.016	0.729	5e-10
322788429	2208	hypothetical protein SINV_15111 [Solenop	0.393	0.016	0.729	5e-10
307176633	2192	Cat eye syndrome critical region protein	0.393	0.016	0.729	5e-10
307208900	2300	Cat eye syndrome critical region protein	0.393	0.016	0.729	5e-10
383853313	2216	PREDICTED: uncharacterized protein LOC10	0.393	0.016	0.729	6e-10
270003689	1867	hypothetical protein TcasGA2_TC002957 [T	0.361	0.018	0.794	6e-10
91078952	1789	PREDICTED: similar to dikar CG32393-PA [	0.361	0.019	0.794	6e-10
328790182	1710	PREDICTED: hypothetical protein LOC40950	0.393	0.021	0.729	7e-10
242022306	1788	conserved hypothetical protein [Pediculu	0.372	0.019	0.771	7e-10

>gi|193674159|ref|XP_001950556.1| PREDICTED: hypothetical protein LOC100163939 [Acyrthosiphon pisum]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 34/37 (91%)

Query: 4   AVYNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDY 40
           ++ NL+SDSLR+ PLGYD N+SA+WYFYGTRLYREDY
Sbjct: 128 SLKNLDSDSLRVHPLGYDENKSAYWYFYGTRLYREDY 164

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021653|gb|EGI62012.1| Cat eye syndrome critical region protein 2 [Acromyrmex echinatior]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 34/37 (91%)

Query: 4   AVYNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDY 40
           ++ NL+SDSLR++PLG+DR  SA+WYFYGTRLYREDY
Sbjct: 131 SLSNLDSDSLRVEPLGHDRKNSAYWYFYGTRLYREDY 167

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322788429|gb|EFZ14100.1| hypothetical protein SINV_15111 [Solenopsis invicta]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 34/37 (91%)

Query: 4   AVYNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDY 40
           ++ NL+SDSLR++PLG+DR  SA+WYFYGTRLYREDY
Sbjct: 129 SLSNLDSDSLRVEPLGHDRKNSAYWYFYGTRLYREDY 165

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176633|gb|EFN66101.1| Cat eye syndrome critical region protein 2 [Camponotus floridanus]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 34/37 (91%)

Query: 4   AVYNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDY 40
           ++ NL+SDSLR++PLG+DR  SA+WYFYGTRLYREDY
Sbjct: 136 SLSNLDSDSLRVEPLGHDRKNSAYWYFYGTRLYREDY 172

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208900|gb|EFN86115.1| Cat eye syndrome critical region protein 2 [Harpegnathos saltator]

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 34/37 (91%)

Query: 4   AVYNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDY 40
           ++ NL+SDSLR++PLG+DR  SA+WYFYGTRLYREDY
Sbjct: 137 SLSNLDSDSLRVEPLGHDRKNSAYWYFYGTRLYREDY 173

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853313|ref|XP_003702167.1| PREDICTED: uncharacterized protein LOC100877127 [Megachile rotundata]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 34/37 (91%)

Query: 4   AVYNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDY 40
           ++ NL+SDSLR++PLG+DR  SA+WYFYGTRLYREDY
Sbjct: 150 SLSNLDSDSLRVEPLGHDRKNSAYWYFYGTRLYREDY 186

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003689|gb|EFA00137.1| hypothetical protein TcasGA2_TC002957 [Tribolium castaneum]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 27/34 (79%), Positives = 33/34 (97%)

Query: 7   NLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDY 40
           NLE+DSLR++PLGYD N+SA+WYFYGTRLYRED+
Sbjct: 136 NLEADSLRVEPLGYDSNESAYWYFYGTRLYREDF 169

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078952|ref|XP_974145.1| PREDICTED: similar to dikar CG32393-PA [Tribolium castaneum]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 27/34 (79%), Positives = 33/34 (97%)

Query: 7   NLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDY 40
           NLE+DSLR++PLGYD N+SA+WYFYGTRLYRED+
Sbjct: 136 NLEADSLRVEPLGYDSNESAYWYFYGTRLYREDF 169

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790182|ref|XP_393011.4| PREDICTED: hypothetical protein LOC409504 [Apis mellifera]

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 34/37 (91%)

Query: 4   AVYNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDY 40
           ++ NL+SDSLR++PLG+DR  SA+WYFYGTRLYREDY
Sbjct: 146 SLNNLDSDSLRVEPLGHDRKNSAYWYFYGTRLYREDY 182

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022306|ref|XP_002431581.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212516889|gb|EEB18843.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/35 (77%), Positives = 33/35 (94%)

Query: 7   NLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDYP 41
           NLESDSLR++PLG+D  +SA+WYFYGTRLYRED+P
Sbjct: 128 NLESDSLRVEPLGHDEKKSAYWYFYGTRLYREDFP 162

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
UNIPROTKB|F1MSA7	1399	F1MSA7 "Uncharacterized protei	0.340	0.022	0.593	3.4e-08
RGD|1564182	1390	Cecr2 "cat eye syndrome chromo	0.340	0.023	0.593	3.7e-07
UNIPROTKB|F1NJP2	1435	CECR2 "Uncharacterized protein	0.414	0.027	0.536	2e-06
UNIPROTKB|Q9BXF3	1484	CECR2 "Cat eye syndrome critic	0.414	0.026	0.536	3.4e-06

UNIPROTKB|F1MSA7 F1MSA7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 120 (47.3 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
 Identities = 19/32 (59%), Positives = 28/32 (87%)

Query:     8 LESDSLRLQPLGYDRNQSAFWYFYGTRLYRED 39
             L++DSLR++PLG D + + +WYFYGTR+Y+ED
Sbjct:    95 LDADSLRVEPLGEDSSGALYWYFYGTRMYKED 126

GO:0021915 "neural tube development" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005719 "nuclear euchromatin" evidence=IEA

RGD|1564182 Cecr2 "cat eye syndrome chromosome region, candidate 2" [Rattus norvegicus (taxid:10116)]

 Score = 121 (47.7 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
 Identities = 19/32 (59%), Positives = 28/32 (87%)

Query:     8 LESDSLRLQPLGYDRNQSAFWYFYGTRLYRED 39
             L++DSLR++PLG D + + +WYFYGTR+Y+ED
Sbjct:    99 LDADSLRVEPLGEDNSGALYWYFYGTRMYKED 130

GO:0001842 "neural fold formation" evidence=ISO

GO:0001843 "neural tube closure" evidence=ISO

GO:0005719 "nuclear euchromatin" evidence=ISO

GO:0021915 "neural tube development" evidence=ISO

GO:0060122 "inner ear receptor stereocilium organization" evidence=ISO

GO:0090102 "cochlea development" evidence=ISO

UNIPROTKB|F1NJP2 CECR2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 124 (48.7 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 22/41 (53%), Positives = 32/41 (78%)

Query:     8 LESDSLRLQPLGYDRNQSAFWYFYGTRLYRED--YPKVDGE 46
             L++DSLR++PLG D + + +WYFYGTR+Y+ED    K +GE
Sbjct:    95 LDADSLRVEPLGEDSSGALYWYFYGTRMYKEDPVQAKTNGE 135

GO:0005719 "nuclear euchromatin" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

UNIPROTKB|Q9BXF3 CECR2 "Cat eye syndrome critical region protein 2" [Homo sapiens (taxid:9606)]

 Score = 122 (48.0 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 22/41 (53%), Positives = 32/41 (78%)

Query:     8 LESDSLRLQPLGYDRNQSAFWYFYGTRLYRED--YPKVDGE 46
             L++DSLR++PLG D + + +WYFYGTR+Y+ED    K +GE
Sbjct:   137 LDADSLRVEPLGEDNSGALYWYFYGTRMYKEDPVQGKSNGE 177


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.139   0.447    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       94        94   0.00091  102 3  11 22  0.38    30
                                                     29  0.42    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  565 (60 KB)
  Total size of DFA:  121 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.50u 0.10s 9.60t   Elapsed:  00:00:01
  Total cpu time:  9.50u 0.10s 9.60t   Elapsed:  00:00:01
  Start:  Thu Aug 15 11:41:36 2013   End:  Thu Aug 15 11:41:37 2013

GO:0005719 "nuclear euchromatin" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=NAS

GO:0000910 "cytokinesis" evidence=NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0043044 "ATP-dependent chromatin remodeling" evidence=IDA

GO:0090537 "CERF complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006309 "apoptotic DNA fragmentation" evidence=TAS

GO:0006915 "apoptotic process" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	94
PF15613	38	WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2	97.93
KOG1472|consensus	720		90.23

>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2

Probab=97.93  E-value=1.2e-05  Score=47.81  Aligned_cols=17  Identities=53%  Similarity=1.253  Sum_probs=16.6

Q ss_pred             eeeeceecCCCceEEEE
Q psy16436         14 RLQPLGYDRNQSAFWYF   30 (94)
Q Consensus        14 RvePLG~D~ngs~YWYF   30 (94)
                      |++|||.|+.++.||+|
T Consensus         1 R~~pLG~DR~~NrYwwf   17 (38)
T PF15613_consen    1 RLKPLGKDRYGNRYWWF   17 (38)
T ss_pred             CcccccccCCCceEEEE
Confidence            78999999999999999

>KOG1472|consensus

Probab=90.23  E-value=0.031  Score=49.68  Aligned_cols=45  Identities=27%  Similarity=0.321  Sum_probs=39.5

Q ss_pred             hhccCCCCceeeeeceecCCCceEEEEeeeeeeeecCCCCCCCCccc
Q psy16436          4 AVYNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDYPKVDGEDMLP   50 (94)
Q Consensus         4 ~lk~LdaDsLRvePLG~D~ngs~YWYFyGTRLYrEdp~~~~~~~~l~   50 (94)
                      .+++.+.|+++.+||+.+..  .+|||+|||.+.+++......+.+.
T Consensus        10 ~~~~~~~~~~~~~~l~e~~~--l~~~~~~~~~~~l~~vs~~~~~~~~   54 (720)
T KOG1472|consen   10 LLKPRDDDSLIAEPLNELCS--LCWHFLGTRISHLDNVSGKSNNELL   54 (720)
T ss_pred             cCCCchhhhhhcchhhhhhh--hhhhhhhhhhhcccccchhhhhhhH
Confidence            46788999999999999988  9999999999999998887766553

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00