Psyllid ID: psy16462

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520--

VSIKDDNSAGRCEYCREKLDDPGLTLFQGHPNEAREHLIALTDPSLCVFDETSDEIDDAPLSRITCFSVYDQNGHLCPFDTGLVEKNVILNFSGYLKCITSEDPTPEGGIPVKEVGPINGWCINGYDGGEQATISLTTDFSEIVLMEPSEEYRPFMKTVMEKIYLVKLVIELCREDENATFEDLLNTLQTATLPASVGVLSEDQLLRHAQFICDQVLGFDDASEGTDETQLIVTPCIRTLIQLAGVTFGQRKKLIASERGRVKPVAAQKPTWSKATTTSLVRDVFENFFKGQLNEKHEGPRKKRCGVCEACQQPDCGTCTACLDMVKFGGTGKAKQACIKRRCPNKAVQDAEDSDIELDGDEVEEKVVKATTKPSWKIKVTGSGKKQIEWQGEGEEMDSKLYYKSALIGGEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEELSDPQELFLLEACDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVPNEMFSSGIDKYCFSCDKAEEEEALSTPNLRNLTEQGTTHEYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFLGSVSKGKGKGKNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKILQRVIDNEVWGKGKNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFDPTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQREMRKHVEKPTIISDHICKDMAPLVQARIKHIPTGEGSDWRDLPNIEVRLKDGTYTKKLQYTHNDMKNGKSSTGALRGVCSCATSAKTPCDPLARQFGTLIPWCLPHTGNRHNNWCGLYGRLQWNGFFSTTITNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEQKGKEETEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD

cccccccccccHHHHHHHccccccccccccccHHHHHHHHccccccccccccccccccccccccccEEEEcccccccccccccccccEEEEEEEEEEEEcccccccccccccEEccccEEEEEEEEcccccEEEEEEccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHcccccccHHHHHHcccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEccEEEEcccEEEEEcccccccccEEEEEEEEEEccccEEEEEEEEEEccccHHHHccccccccEEEEccccccccccEEEEEEEEEEccccHHHHccccccccccccccccccEEEEEEEccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccEEEEEEEEEccEEEEccEEEccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccEEEEEEcccccccccccEEEEEEEccccccccccccccccccccEEEEcccccccccccEEEEEEEEEEcccccccccccccccccEEEEEEccccccccccccHHHHHcccccccccccccccccccccccccccccccccccEEcccccccccccccccccccEEEEEEEccHHHHHHHHcccccccEEEcccHHHHccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccEEEEEcccHHHHHHHHHHcccccEEcccHHHHHHHHHHHHHccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEcccHHHHccccHHHHHHHHHHHHHcccEEEEEEEEccccccccccEEEEccccccccccccEEEEccccccccccEEEEcccHHHHccccHHHHHHHHHHHHHccEEEEEEEEEccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccHHHHHHHcccccccEEEccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccc

ccccccccccHHHHHHHHccccccHHcccccccHccccHEccccEEEEEcccccccccccccEEEEEEEEcccccEEEcccccEEEcEEEEEEEEEEEcccccccccccccccccccccEEEEEccccccEEEEEEEccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccHHccccccccEEEcHHHHHHHHHccccHHHHHHHHHHHccccccHHHcccccccccHHHHHHHHHHHHHHHHccccccccHHccccccEccccccccccccHHHHHHcccccccHHHHHHcccccccHEccccccccccccccccccccccccccccccEEccccEEEEEEcccEEccccEEEEEEEEccEEEEEccEEEEEccccccccEEEEEEEEEEccccccccEEEEEEEEEccccEccccccccEEEEEcccccccHHHHEEEEEEEEccccHHHHHcccccccHHHcccccccEEEEEEEccHccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccEEEEEEEEccEEEEcccEEEEcccHccccccccccccccccccccHHHcHHHHHHccHHccccccccccccEEEEEEEEEEcccccccccccEEEEEEEEEccccccccccHHHHccccEEEEccccccccHHHEEEEEEEEEcccccccHHcccccccccEEEEEEEccccccccccccHccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHccccccEEEEcccHHHHHHHHHcccccEEEcccHHHHHHHHHHHcccccccccccccccHHHHcccccccccccEEEEEcccccccHHHHHccccEEEEEEcccHHHHHHHHHcccccEEccccHHHHHHHHHHHcccccccccccccccEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEcccccEEccccHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEccccHEEccccHHHHHHHHHHHHcccEEEEEEEEcccccccHHHHEEEEEEcccccccccccccccEEEccccccccEccccEEEEcccccccccccEEEHHHHHccccccccccccccccccccccHHHHHHHHcccccccEEccccccHccHHHHHHHHccccccccccccccccEEEcccccEcccEEEcccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccEEcccccccEEEEccccccccccEEccccccEEEEEHHHHHccccccEEEEccHHHHHEEccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccHHHccccHHcHHcccccccccccccccHHHHHcccccccc

vsikddnsagrceycreklddpgltlfqghpneAREHLialtdpslcvfdetsdeiddaplsritcfsvydqnghlcpfdtglvEKNVILNFSGYlkcitsedptpeggipvkevgpingwcingydggeqaTISLTTDFseivlmepseeyrpFMKTVMEKIYLVKLVIELCREDENATFEDLLNTLQTatlpasvgvlsedQLLRHAQFICDqvlgfddasegtdetqlIVTPCIRTLIQLAGVTFGQRKKLIasergrvkpvaaqkptwskattTSLVRDVFENFFKgqlnekhegprkkrcgvceacqqpdcgtctacldmvkfggtgkakqacikrrcpnkavqdaedsdieldgdeVEEKVVKAttkpswkikvtgsgkkqiewqgegeemdsKLYYKSAliggeevkvgDYVMvesddpnnpppvgkvcYMYEDMKNFKTRKCHILWFARGQETvleelsdpqELFLLEACDDVSLNAVANlcqvkhfpisenwamqggcpqptppvdredersfyyrqtydplharfcdvpnemfssgidkycfscdkaeeeealstpnlrnlteqgttheyyncvsyegeqyklkscvyvnpdcfkfkskpqsavqnnkrpvedeelyPEAYRKLSDymkgsnaytpapfgIGYIVAIFKKkgkknvsasdVFLTVkkfyrpenthrsveFTYQLDlnklywsdeeeqvslsdvqgkcfvvcednlqistdrwssrgphrfyfneaynskteeftnlptealflgsvskgkgkgknqtnkpeekdeitewpsiarplRCLEVFAgagglsrgldksgvarstwAIEFDSAAAAAFkmnnpgctvfVDDCNKILQRVIDnevwgkgknqtnkpeekdeitewpsiarplRCLEVFAgagglsrgldksgvarstwAIEFDSAAATAfkmnnpgctvfVDDCNKILQRVIdnevcddkkqklprkgevemlcggppcqgfsgmnrfnqrqYSAFKNSLIVSYLSYcdyyrprfflLENVRNFVAFKNSMVLKMTMRCLTQIGyqctfgtlqaghfdptpcycigcctrgssafkNSLIVSYLSYcdyyrprfflLENVRNFVAFKNSMVLKMTMRCLTQIgyqctfgtlqaghfgvsQTRRRAIVLAaapgevlpkypepwtvfsprtsqlnvtisKKTYVStckwtqsapyrtitVRDVMsdlpeiqngckmeelpykENALSHFQREMrkhvekptiisdhiCKDMAPLVQARIkhiptgegsdwrdlpnievrlkdgtytkkLQYThndmkngksstgalrgvcscatsaktpcdplarqfgtlipwclphtgnrhnnwcglygrlqwngffsttitnpepmgkqgrvlhpeqhRVVSVRecarsqgfpdhhkfhGTILEKHrqvgnavpppmgEALGREIKRALAEKEKKVEEKKKAEEESVKQTEEEqkgkeetekeepiqedekegneevmredenkenddrkkgeiedkeedgkenkssetsadQEIDEVmtadetkd

vsikddnsagrcEYCREKLDDPGLTLFQGHPNEAREHLIALTDPSLCVFDETSDEIDDAPLSRITCFSVYDQNGHLCPFDTGLVEKNVILNFSGYLKCITSEDPTPEGGIPVKEVGPINGWCINGYDGGEQATISLTTDFSEIVLMEPSEEYRPFMKTVMEKIYLVKLVIELCREDENATFEDLLNTLQTATLPASVGVLSEDQLLRHAQFICDQVLGFDDASEGTDETQLIVTPCIRTLIQLAGVTFGQRKKliasergrvkpvaaqkptwskatttslvRDVFENFFkgqlnekhegprKKRCGVCEACQQPDCGTCTACLDMVKFGGTGKAkqacikrrcpnkavqdaedsdieldgdeveekvvkattkpswkikvtgsgkkqiewqgegeemdSKLYYKSALIGGEEVKVGDYVMVEsddpnnpppvGKVCYMYEDMKNFKTRKCHILWFARGQETVLEELSDPQELFLLEACDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVPNEMFSSGIDKYCFSCDKAEeeealstpnlrnlteqgtTHEYYNCVSYEGEQYKLKSCVYVNPDCfkfkskpqsavqnnkrpvedeelyPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVkkfyrpenthrsvefTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQistdrwssrgphRFYFNEAYNSKTEEFTNLPTEALFLgsvskgkgkgknqtnkpeekdeitewpsiarpLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKILQRVidnevwgkgknqtnkpeekdeitewpsiarpLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVidnevcddkkqklprkgevemLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFDPTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAapgevlpkypepwtvfsprtsqlnvtiskktyvstckwtqsapyrtitvRDVMSDLPEIQNGCKMEELPYKENALSHFQREMRKHVEKPTIISDHICKDMAPLVQARIKHiptgegsdwrdlpnIEVRLKDGTYTKKLqythndmkngksstGALRGVCSCATSAKTPCDPLARQFGTLIPWCLPHTGNRHNNWCGLYGRLQWNGFFSTTITNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRALAEKekkveekkkaeeesvkqteeeqkgkeetekeepiqedekegneevmredenkenddrkkgeiedkeedgkenkssetsadqeidevmtadetkd

VSIKDDNSAGRCEYCREKLDDPGLTLFQGHPNEAREHLIALTDPSLCVFDETSDEIDDAPLSRITCFSVYDQNGHLCPFDTGLVEKNVILNFSGYLKCITSEDPTPEGGIPVKEVGPINGWCINGYDGGEQATISLTTDFSEIVLMEPSEEYRPFMKTVMEKIYLVKLVIELCREDENATFEDLLNTLQTATLPASVGVLSEDQLLRHAQFICDQVLGFDDASEGTDETQLIVTPCIRTLIQLAGVTFGQRKKLIASERGRVKPVAAQKPTWSKATTTSLVRDVFENFFKGQLNEKHEGPRKKRCGVCEACQQPDCGTCTACLDMVKFGGTGKAKQACIKRRCPNKAVQDAEDSDIELDGDEVEEKVVKATTKPSWKIKVTGSGKKQIEWQGEGEEMDSKLYYKSALIGGEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEELSDPQELFLLEACDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVPNEMFSSGIDKYCFSCDKAEEEEALSTPNLRNLTEQGTTHEYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFLgsvskgkgkgkNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSaaaaaFKMNNPGCTVFVDDCNKILQRVIDNEVWGKGKNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFDPTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQREMRKHVEKPTIISDHICKDMAPLVQARIKHIPTGEGSDWRDLPNIEVRLKDGTYTKKLQYTHNDMKNGKSSTGALRGVCSCATSAKTPCDPLARQFGTLIPWCLPHTGNRHNNWCGLYGRLQWNGFFSTTITNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRALaekekkveekkkaeeesvkqteeeqkgkeetekeepiqedekeGNEEVMREDENKENddrkkgeiedkeedgkenkSSETSADQEIDEVMTADETKD

***********CEYCREKLDDPGLTLFQGHPNEAREHLIALTDPSLCVFDETSDEIDDAPLSRITCFSVYDQNGHLCPFDTGLVEKNVILNFSGYLKCITSEDPTPEGGIPVKEVGPINGWCINGYDGGEQATISLTTDFSEIVLMEPSEEYRPFMKTVMEKIYLVKLVIELCREDENATFEDLLNTLQTATLPASVGVLSEDQLLRHAQFICDQVLGFDDASEGTDETQLIVTPCIRTLIQLAGVTFGQRKKLIASERGRVKPVAAQKPTWSKATTTSLVRDVFENFFKGQLN*******KKRCGVCEACQQPDCGTCTACLDMVKFGGTGKAKQACIKRRC********************************WKIKV******************SKLYYKSALIGGEEVKVGDYVMV**********VGKVCYMYEDMKNFKTRKCHILWFARGQETVLEELSDPQELFLLEACDDVSLNAVANLCQVKHFPISENWAMQGG**************SFYYRQTYDPLHARFCDVPNEMFSSGIDKYCFSCDK**************LTEQGTTHEYYNCVSYEGEQYKLKSCVYVNPDCFKF***********************AYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFL************************EWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKILQRVIDNEVWGK*************ITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDK********EVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFDPTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYK**ALSHF******HVEKPTIISDHICKDMAPLVQARIKHIPTGEGSDWRDLPNIEVRLKDGTYTKKLQY*********************************RQFGTLIPWCLPHTGNRHNNWCGLYGRLQWNGFFSTTIT******************VVSVREC*********HKFHGTIL***************************************************************************************************************************

************EYCREKLDDPGLTLFQGHPNEAREHLIALTDPSLCVFDETSDEIDDAPLSRITCFSVYDQNGHLCPFDTGLVEKNVILNFSGYLKCITS**********VKEVGPINGWCINGYDGGEQATISLTTDFSEIVLMEPSEEYRPFMKTVMEKIYLVKLVIELCREDENATFEDLLNTLQTATLPASVGVLSEDQLLRHAQFICDQVLGFDDASEGTDETQLIVTPCIRTLIQLAGVTF******************************SLVRDVFENF***************************CGTCTA*******************************DSDIELDGDEVEE******************************EMDSKLYYKSALIGGEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEELSDPQELFLLEACDDVSLNAVANLCQVKHFPISENWAM*************EDERSFYYRQTYDPLHARFCDVP*********KYC**CDK***************TEQGTTHEYYNCVSYEGEQYKLKSCVYVNPDCFK*******************ELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKK*****SASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNL***************************************LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKILQRVIDNEVWGKGKNQ*****************RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFDPTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQREMRKHVEKPTIISDHICKDMAPLVQARIKHIPTGEGSDWRDLPNIEVRLKDGTYTKKLQYTHNDMKNGKSSTGALRGVCSCATSAKTPCDPLARQFGTLIPWCLPHTGNRHNNWCGLYGRLQWNGFFSTTITNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRAL*************************************************************************************************

*********GRCEYCREKLDDPGLTLFQGHPNEAREHLIALTDPSLCVFDETSDEIDDAPLSRITCFSVYDQNGHLCPFDTGLVEKNVILNFSGYLKCITSEDPTPEGGIPVKEVGPINGWCINGYDGGEQATISLTTDFSEIVLMEPSEEYRPFMKTVMEKIYLVKLVIELCREDENATFEDLLNTLQTATLPASVGVLSEDQLLRHAQFICDQVLGFDDASEGTDETQLIVTPCIRTLIQLAGVTFGQRKKLIASERGRVKPVAAQKPTWSKATTTSLVRDVFENFFKGQLNE**********GVCEACQQPDCGTCTACLDMVKFGG************************DIELDGDEVEEKVVKATTKPSWKI***********WQGEGEEMDSKLYYKSALIGGEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEELSDPQELFLLEACDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVPNEMFSSGIDKYCFSCDKAEEEEALSTPNLRNLTEQGTTHEYYNCVSYEGEQYKLKSCVYVNPDCFKFKSK*************DEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFLGSVSK*****************ITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKILQRVIDNEVWGKG************ITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFDPTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQREMRKHVEKPTIISDHICKDMAPLVQARIKHIPTGEGSDWRDLPNIEVRLKDGTYTKKLQYTHNDMKNGKSSTGALRGVCSCATSAKTPCDPLARQFGTLIPWCLPHTGNRHNNWCGLYGRLQWNGFFSTTITNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRALA************************************************************************************IDEVMTADETKD

*******SAGRCEYCREKLDDPGLTLFQGHPNEAREHLIALTDPSLCVFDETSDEIDDAPLSRITCFSVYDQNGHLCPFDTGLVEKNVILNFSGYLKCITSEDPTPEGGIPVKEVGPINGWCINGYDGGEQATISLTTDFSEIVLMEPSEEYRPFMKTVMEKIYLVKLVIELCREDENATFEDLLNTLQTATLPASVGVLSEDQLLRHAQFICDQVLGFDDASEGTDETQLIVTPCIRTLIQLAGVTFGQRKKLIASER*RVKPV**QKPTWSKATTTSLVRDVFENFFKGQLNEKHEGPRKKRCGVCEACQQPDCGTCTACLDMVKFGGTGKAKQACIKRRCPNKAVQ****************************IKVTGSGKKQIEWQGEGEEMDSKLYYKSALIGGEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEELSDPQELFLLEACDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVPNEMFSSGIDKYCFSCDKAEEEEALSTPNLRNLTEQGTTHEYYNCVSYEGEQYKLKSCVYVNPDCFKFK************PVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPT***********************************RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKILQRVIDNEVWG**********E*D**TEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFDPTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQREMRKHVEKPTIISDHICKDMAPLVQARIKHIPTGEGSDWRDLPNIEVRLKDGTYTKKLQYTHNDMKNGKSSTGALRGVCSCATSAKTPCDPLARQFGTLIPWCLPHTGNRHNNWCGLYGRLQWNGFFSTTITNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREIKRALAEK**********************************************************************************************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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VSIKDDNSAGRCEYCREKLDDPGLTLFQGHPNEAREHLIALTDPSLCVFDETSDEIDDAPLSRITCFSVYDQNGHLCPFDTGLVEKNVILNFSGYLKCITSEDPTPEGGIPVKEVGPINGWCINGYDGGEQATISLTTDFSEIVLMEPSEEYRPFMKTVMEKIYLVKLVIELCREDENATFEDLLNTLQTATLPASVGVLSEDQLLRHAQFICDQVLGFDDASEGTDETQLIVTPCIRTLIQLAGVTFGQRKKLIASERGRVKPVAAQKPTWSKATTTSLVRDVFENFFKGQLNEKHEGPRKKRCGVCEACQQPDCGTCTACLDMVKFGGTGKAKQACIKRRCPNKAVQDAEDSDIELDGDEVEEKVVKATTKPSWKIKVTGSGKKQIEWQGEGEEMDSKLYYKSALIGGEEVKVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEELSDPQELFLLEACDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVPNEMFSSGIDKYCFSCDKAEEEEALSTPNLRNLTEQGTTHEYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFLGSVSKGKGKGKNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAAAFKMNNPGCTVFVDDCNKILQRVIDNEVWGKGKNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFDPTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQREMRKHVEKPTIISDHICKDMAPLVQARIKHIPTGEGSDWRDLPNIEVRLKDGTYTKKLQYTHNDMKNGKSSTGALRGVCSCATSAKTPCDPLARQFGTLIPWCLPHTGNRHNNWCGLYGRLQWNGFFSTTITNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKEEPIQEDEKEGNEEVMREDENKENDDRKKGEIEDKEEDGKENKSSETSADQEIDEVMTADETKD

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1522	2.2.26 [Sep-21-2011]
Q27746		1612	DNA (cytosine-5)-methyltr	N/A	N/A	0.546	0.516	0.429	0.0
Q92072		1537	DNA (cytosine-5)-methyltr	yes	N/A	0.540	0.534	0.422	0.0
P13864		1620	DNA (cytosine-5)-methyltr	yes	N/A	0.545	0.512	0.419	1e-180
Q9Z330		1622	DNA (cytosine-5)-methyltr	yes	N/A	0.544	0.511	0.419	1e-177
Q24K09		1611	DNA (cytosine-5)-methyltr	yes	N/A	0.551	0.520	0.407	1e-177
P26358		1616	DNA (cytosine-5)-methyltr	yes	N/A	0.545	0.513	0.408	1e-173
Q7Y1I7		1527	DNA (cytosine-5)-methyltr	yes	N/A	0.202	0.201	0.443	8e-90
P34881		1534	DNA (cytosine-5)-methyltr	yes	N/A	0.203	0.201	0.453	6e-89
B1Q3J6		1529	DNA (cytosine-5)-methyltr	no	N/A	0.203	0.202	0.438	1e-87
Q94F88		839	DNA (cytosine-5)-methyltr	no	N/A	0.203	0.369	0.273	1e-34

>sp\|Q27746\|DNMT1_PARLI DNA (cytosine-5)-methyltransferase PliMCI OS=Paracentrotus lividus GN=DNMT PE=2 SV=1	Back alignment and function desciption

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/874 (42%), Positives = 530/874 (60%), Gaps = 42/874 (4%)

Query: 11   RCEYCREKLDDPGLTLFQGHPNEAREHLIALTDPSLCVFDETSDE-----IDDAPLSRIT 65
            RC+ CR+ LDDP L +F G P +ARE  I LTDP L +   T DE      D+    +IT
Sbjct: 338  RCKECRQLLDDPDLKIFPGDPEDAREEYITLTDPRLSLL--TGDEGDAMSYDERLQHKIT 395

Query: 66   CFSVYDQNGHLCPFDTGLVEKNVILNFSGYLKCITSEDPTPEGGIPVKEVGPINGWCING 125
             F VYD++ H+C FD G++EKN  L FSGY+K I  ++P+ EGGIP K +GPIN W   G
Sbjct: 396  NFCVYDKSTHICAFDRGMIEKNKELYFSGYVKPIYDDNPSTEGGIPTKRIGPINEWYTTG 455

Query: 126  YDGGEQATISLTTDFSEIVLMEPSEEYRPFMKTVMEKIYLVKLVIELCREDENATFEDLL 185
            +DGG +A I  +T F+E ++M PSEEY+PF   V EKIY+ K++IE  + + +  +EDLL
Sbjct: 456  FDGGHKALIGFSTAFAEYIVMSPSEEYKPFWTAVQEKIYMSKILIEFLQNNVDPVYEDLL 515

Query: 186  NTLQTATLPASVGVLSEDQLLRHAQFICDQVLGFDDASEGTDETQLIVTPCIRTLIQLAG 245
              ++T   P      +ED LLRHAQF+ +QV  +DDA++  DE  LI  PC+R LI+LAG
Sbjct: 516  TQIETTVPPEGCNRFTEDSLLRHAQFVVEQVESYDDAAD-RDEVLLITMPCMRDLIKLAG 574

Query: 246  VTFGQRKKLIASERGRVKPVAAQKPTWSKATTTSLVRDVFENFFKGQLNEKHEGP---RK 302
            VT G+R+    +          +KP ++ AT T LV  +F+  FK Q+ ++ +     RK
Sbjct: 575  VTLGKRRAARKAAAV----KKDKKPVFTMATVTPLVSHIFDAIFKDQIADEMKAAASERK 630

Query: 303  KRCGVCEACQQPDCGTCTACLDMVKFGGTGKAKQACIKRRCPNKAVQDAEDSDI-ELDGD 361
            KRCGVCE CQ PDCG CTAC DM+KFGG+GKAKQAC  RRCPN AVQ+A+++DI E+D  
Sbjct: 631  KRCGVCEICQAPDCGKCTACKDMIKFGGSGKAKQACKDRRCPNMAVQEADENDIDEMDNS 690

Query: 362  EVEEKVVKATTKPSWKIKVTGSGKK--QIEWQGEGEEM-DSKLYYKSALIGGEEVKVGDY 418
              +E   +   K   K++     KK  ++ W  E  E+ + + YYK+A++  E++++GD 
Sbjct: 691  SNKENKDEKKAKKGRKLETPLKKKKRAKVTWLDEPTEVTEERAYYKAAMLDDEKIEIGDC 750

Query: 419  VMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEELSDPQELFLLEAC 478
            V++  DDP  P  + +V YM+++ +       H  WF  G ETVL E SDP E+F ++ C
Sbjct: 751  VLIHPDDPTKPLFMARVIYMWQESQG--EMMFHAQWFVYGSETVLGETSDPLEVFPIDEC 808

Query: 479  DDVSLNAVANLCQVKHFPISENWAMQGGCPQP-TPPVDREDE-RSFYYRQTYDPLHARFC 536
             D  L +V   C V +     +W+M GG   P T  V +ED+ ++F+Y++ YDP  ARF 
Sbjct: 809  QDTYLGSVNAKCTVIYKAPPNDWSMIGGIDDPETDHVIKEDDGKTFFYQKWYDPELARFE 868

Query: 537  DVPNEMFSSGI--DKYCFSCDKAE--EEEALSTPNLRNLTEQGTTHEYYNCVSYEGEQYK 592
            D    M    I   ++C  C K E  +E+  + P  +   +  ++   Y+   Y+G +++
Sbjct: 869  DYEVLMAPDDIPAHRFCSCCLKNERAQEKETARPGAKLEDQDDSSKVLYSSWHYKGNEFQ 928

Query: 593  LKSCVYVNPDCFKFKSKPQSAVQNNKRPVE----DEELYPEAYRKLSDYMKGSNAYTPAP 648
            +   VY+ P+ F F  K Q  V   K+PV     DE+LYPE YRK S+Y+KGSN   P P
Sbjct: 929  IGDGVYLLPEVFSFNIK-QKVV--TKKPVSKKDVDEDLYPENYRKSSEYVKGSNLECPEP 985

Query: 649  FGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQV 708
            F IG I++I+  K     S S V L V K YRPE+TH+     YQ DLN LYWS+EE   
Sbjct: 986  FRIGKIISIYTTK-----SNSTVRLRVNKMYRPEDTHKGRTAAYQADLNVLYWSEEEAVT 1040

Query: 709  SLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFLGSVSK 768
             L  VQGKC VVC ++L +STD +S+ GPH+FYF EAY+S+ + F + P+++       K
Sbjct: 1041 ELEVVQGKCSVVCAEDLNVSTDEYSAGGPHKFYFREAYDSERKCFEDPPSKSRSTRMKGK 1100

Query: 769  GKGKGKNQTNKPEEKDEITEWPSIARP---LRCLEVFAGAGGLSRGLDKSGVARSTWAIE 825
            GKGKGK +       ++  E  S   P   L+CL+VFAG GGLS G  ++G+  S+WAIE
Sbjct: 1101 GKGKGKGKAKGKIAVEKEEEKESTETPFNKLKCLDVFAGCGGLSEGFHQAGICESSWAIE 1160

Query: 826  FDSAAAAAFKMNNPGCTVFVDDCNKILQRVIDNE 859
             +  AA A+++NNPG TVF DDCN++L+ V+  E
Sbjct: 1161 KEEPAAQAYRLNNPGSTVFSDDCNELLRLVMQGE 1194

Methylates CpG residues.
Paracentrotus lividus (taxid: 7656)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp\|Q92072\|DNMT1_CHICK DNA (cytosine-5)-methyltransferase 1 OS=Gallus gallus GN=DNMT1 PE=1 SV=1	Back alignment and function description

>sp\|P13864\|DNMT1_MOUSE DNA (cytosine-5)-methyltransferase 1 OS=Mus musculus GN=Dnmt1 PE=1 SV=5	Back alignment and function description

>sp\|Q9Z330\|DNMT1_RAT DNA (cytosine-5)-methyltransferase 1 OS=Rattus norvegicus GN=Dnmt1 PE=1 SV=2	Back alignment and function description

>sp\|Q24K09\|DNMT1_BOVIN DNA (cytosine-5)-methyltransferase 1 OS=Bos taurus GN=DNMT1 PE=2 SV=1	Back alignment and function description

>sp\|P26358\|DNMT1_HUMAN DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens GN=DNMT1 PE=1 SV=2	Back alignment and function description

>sp\|Q7Y1I7\|DNM1A_ORYSJ DNA (cytosine-5)-methyltransferase 1A OS=Oryza sativa subsp. japonica GN=MET1A PE=2 SV=1	Back alignment and function description

>sp\|P34881\|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana GN=DMT1 PE=1 SV=1	Back alignment and function description

>sp\|B1Q3J6\|DNM1B_ORYSJ DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica GN=MET1B PE=2 SV=1	Back alignment and function description

>sp\|Q94F88\|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana GN=CMT3 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1522
350422372		1368	PREDICTED: DNA (cytosine-5)-methyltransf	0.555	0.618	0.454	0.0
283549178		1366	DNA methyltransferase 1a [Apis mellifera	0.551	0.614	0.457	0.0
383852983		1698	PREDICTED: DNA (cytosine-5)-methyltransf	0.552	0.495	0.451	0.0
307193684		1460	DNA (cytosine-5)-methyltransferase 1 [Ha	0.554	0.578	0.450	0.0
383862947		1440	PREDICTED: DNA (cytosine-5)-methyltransf	0.545	0.576	0.428	0.0
340719551		1442	PREDICTED: DNA (cytosine-5)-methyltransf	0.548	0.579	0.427	0.0
350410581		1441	PREDICTED: DNA (cytosine-5)-methyltransf	0.552	0.583	0.436	0.0
110765384		1427	PREDICTED: DNA (cytosine-5)-methyltransf	0.549	0.586	0.436	0.0
332023953		1449	DNA (cytosine-5)-methyltransferase PliMC	0.549	0.576	0.443	0.0
405116965		1592	DNA cytosine-5-methyltransferase 1 [Pati	0.545	0.521	0.443	0.0

>gi\|350422372\|ref\|XP_003493144.1\| PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Bombus impatiens]	Back alignment and taxonomy information

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/878 (45%), Positives = 555/878 (63%), Gaps = 32/878 (3%)

Query: 3   IKDDNS-AGRCEYCREKLDDPGLTLFQGHPNEAREHLIALTDPSLCVFDETSD---EIDD 58
           IK  N+   +CEYCR+KL+D  + ++QGHPN A +  IALTDP LC+F+ +     E D 
Sbjct: 91  IKSTNTFHSKCEYCRQKLND-DIKIYQGHPNGAVDEDIALTDPKLCLFNGSESFIHESDQ 149

Query: 59  APLSRITCFSVYDQNGHLCPFDTGLVEKNVILNFSGYLKCITSEDPTPEGGIPVKEVGPI 118
            P +++T FSVYD+NGHLC FDTGL+EKNV+L FSGY+K I  ED +PE G+P K++GPI
Sbjct: 150 RPQNKLTYFSVYDKNGHLCAFDTGLIEKNVMLYFSGYIKAIYEEDASPENGVPAKDMGPI 209

Query: 119 NGWCINGYDGGEQATISLTTDFSEIVLMEPSEEYRPFMKTVMEKIYLVKLVIELCREDEN 178
           N W ++G+DGGE A I   T F E +LM+PSEEY PFM  V EKIY+ KL+IE   ++ N
Sbjct: 210 NEWYVSGFDGGELALIGFNTAFCEYILMDPSEEYTPFMDVVREKIYMSKLIIEFLLDEIN 269

Query: 179 ATFEDLLNTLQTATLPASVGVLSEDQLLRHAQFICDQVLGFDDASEGTDETQLIVTPCIR 238
            ++EDLLN LQT   P  +   +ED LLRHAQFICDQVL FDD++   D T LI +PC+R
Sbjct: 270 PSYEDLLNKLQTIVPPKGITKFTEDSLLRHAQFICDQVLSFDDSASAED-TLLITSPCMR 328

Query: 239 TLIQLAGVTFGQRKKLIASERGRVKPVAAQKPTWSKATTTSLVRDVFENFFKGQLNEKHE 298
            L  LAGVT G+R   ++  + R++    +KP W+KATTT LV ++FEN F  QL + ++
Sbjct: 329 ALANLAGVTLGKR---VSLRQMRLREQKVRKPAWTKATTTQLVNNMFENIFADQLTKHND 385

Query: 299 ----GPRKKRCGVCEACQQPDCGTCTACLDMVKFGGTGKAKQACIKRRCPNKAVQDAEDS 354
               GP+++RCGVCE CQQPDCG C AC DM+KFGGTG+ KQACIKRRCPN A+Q+A+DS
Sbjct: 386 TITMGPKRQRCGVCEHCQQPDCGLCNACKDMIKFGGTGRGKQACIKRRCPNMAIQEADDS 445

Query: 355 DIELDGDEVEEKVVKATTKPSWKIKVTGSGKKQIEWQGEGEEMDS-KLYYKSALIGGEEV 413
           D E   +E +   ++   +   + KV    KK I W G+    ++ K +YKS ++G E++
Sbjct: 446 DPE---NEDQYDTLRIEVEECRR-KVFKELKKDIVWIGDQIASNNLKTFYKSVIVGDEKI 501

Query: 414 KVGDYVMVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEELSDPQELF 473
           ++ DYV+VE  +P  P  V KV YM+E+    K  + H  W  RG +T+L E SDP ELF
Sbjct: 502 EINDYVLVEPRNPAIPSHVAKVIYMWENKNGIK--QFHANWLHRGNDTILGETSDPIELF 559

Query: 474 LLEACDDVSLNAVANLCQVKHFPISENWAMQGGCPQPTP-PVDREDERSFYYRQTYDPLH 532
           L + CDDV   +V + C V    + +NWA  G     +   +   D ++F+Y++ Y P  
Sbjct: 560 LSDDCDDVPFKSVRSKCTVIFKNVPKNWAELGNMDLNSENEIKDLDGKTFFYQKRYTPAT 619

Query: 533 ARFCDV---PNEMFSSGIDKYCFSCDKAEEEEALSTPNLRNLTEQGTTHE-YYNCVSYEG 588
           ARF D    P  +      ++C +C    E E  + P +    E+ +T E  Y  V Y+G
Sbjct: 620 ARFEDPLPDPKCLPKENRHRFCPACAHLREVEQFNMPKVYERIEEKSTKEVIYGLVKYKG 679

Query: 589 EQYKLKSCVYVNPDCFKFKSK-PQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPA 647
           E Y++ + V++ P  F FK K     +Q  K+   DE++YPE YRK SD++KGSN  TP 
Sbjct: 680 EDYRVGTTVFLQPKAFNFKYKIIHQDIQKLKQENVDEDMYPEFYRKSSDHVKGSNFDTPD 739

Query: 648 PFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQ 707
           PF IGYI  I+       V+ SD+ + V K YRPENTH++V    Q DLN +YWSDE   
Sbjct: 740 PFCIGYINEIYVSTNDMLVAPSDIKIKVNKLYRPENTHKNVTLMEQADLNMVYWSDEVCN 799

Query: 708 VSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFLGSVS 767
           +   +V GKC++   +NL  + D W++ GP+RFYFNEAYN++ + F   P  A+ +G   
Sbjct: 800 IKFIEVVGKCYLAYSENLNQTVDEWTAEGPNRFYFNEAYNAQEKTFNEPPYHAISIGKSG 859

Query: 768 KGKGKGKNQTNKPEEKDEIT------EWPSIARPLRCLEVFAGAGGLSRGLDKSGVARST 821
           K KG  K +  K EE ++        E+  I++ L+ L+VFAG GGLS GL ++G+A + 
Sbjct: 860 KSKGNLKFKGKKTEESEKRAFVSRPIEYNKISKKLKTLDVFAGCGGLSEGLHQAGIAENL 919

Query: 822 WAIEFDSAAAAAFKMNNPGCTVFVDDCNKILQRVIDNE 859
           WAIE + AAA A+++NNP  TVF DDCN +L++V+D E
Sbjct: 920 WAIEKEEAAANAYRLNNPNTTVFTDDCNILLKKVMDGE 957

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|283549178\|ref\|NP_001164522.1\| DNA methyltransferase 1a [Apis mellifera]	Back alignment and taxonomy information

>gi\|383852983\|ref\|XP_003702004.1\| PREDICTED: DNA (cytosine-5)-methyltransferase PliMCI-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|307193684\|gb\|EFN76367.1\| DNA (cytosine-5)-methyltransferase 1 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|383862947\|ref\|XP_003706944.1\| PREDICTED: DNA (cytosine-5)-methyltransferase PliMCI-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|340719551\|ref\|XP_003398214.1\| PREDICTED: DNA (cytosine-5)-methyltransferase PliMCI-like [Bombus terrestris]	Back alignment and taxonomy information

>gi\|350410581\|ref\|XP_003489082.1\| PREDICTED: DNA (cytosine-5)-methyltransferase PliMCI-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|110765384\|ref\|XP_001122269.1\| PREDICTED: DNA (cytosine-5)-methyltransferase PliMCI [Apis mellifera]	Back alignment and taxonomy information

>gi\|332023953\|gb\|EGI64171.1\| DNA (cytosine-5)-methyltransferase PliMCI [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|405116965\|gb\|AFR91943.1\| DNA cytosine-5-methyltransferase 1 [Patiria pectinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1522
ZFIN\|ZDB-GENE-990714-15		1500	dnmt1 "DNA (cytosine-5-)-methy	0.547	0.556	0.428	0.0
UNIPROTKB\|Q92072		1537	DNMT1 "DNA (cytosine-5)-methyl	0.545	0.540	0.419	0.0
MGI\|MGI:94912		1620	Dnmt1 "DNA methyltransferase (	0.544	0.511	0.423	0.0
UNIPROTKB\|P26358		1616	DNMT1 "DNA (cytosine-5)-methyl	0.546	0.514	0.412	1.60000000004e-314
UNIPROTKB\|Q24K09		1611	DNMT1 "DNA (cytosine-5)-methyl	0.553	0.523	0.410	1.99999999993e-314
UNIPROTKB\|F5GX68		1619	DNMT1 "Cytosine-specific methy	0.546	0.513	0.412	8.79999999998e-314
UNIPROTKB\|F1S3I5		1611	DNMT1 "Cytosine-specific methy	0.552	0.522	0.414	2.6e-312
UNIPROTKB\|E2RHC6		1613	DNMT1 "Cytosine-specific methy	0.545	0.514	0.412	1e-310
RGD\|620979		1622	Dnmt1 "DNA (cytosine-5-)-methy	0.547	0.514	0.416	3.3e-303
UNIPROTKB\|Q9Z330		1622	Dnmt1 "DNA (cytosine-5)-methyl	0.547	0.514	0.416	3.3e-303

ZFIN\|ZDB-GENE-990714-15 dnmt1 "DNA (cytosine-5-)-methyltransferase 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 1757 (623.6 bits), Expect = 0., Sum P(2) = 0.
 Identities = 373/870 (42%), Positives = 534/870 (61%)

Query:    11 RCEYCREKLDDPGLTLFQGHPNEAREHLIALTDPSLCVFDETSD---EIDDAPLSRITCF 67
             +C  CR+ LDD  L  FQG P++A +    LTD  L +FD   D     +D P  +IT F
Sbjct:   232 KCPDCRQYLDDSDLKFFQGDPDDALDEPEMLTDERLSLFDSNEDGFESYEDLPQHKITNF 291

Query:    68 SVYDQNGHLCPFDTGLVEKNVILNFSGYLKCITSEDPTPEGGIPVKEVGPINGWCINGYD 127
             SVYD+ GHLCPFD+GL+EKNV L FS  +K I  ++P  +GG+P K++GPIN W I G+D
Sbjct:   292 SVYDKRGHLCPFDSGLIEKNVELYFSCAVKPIYDDNPCMDGGVPAKKLGPINAWWITGFD 351

Query:   128 GGEQATISLTTDFSEIVLMEPSEEYRPFMKTVMEKIYLVKLVIELCREDENATFEDLLNT 187
             GGE+A I  TT F++ +LM+PSEEY      + EKIY+ K+V+E  +++++AT+EDLLN 
Sbjct:   352 GGEKALIGFTTAFADYILMDPSEEYSAIFALMQEKIYMSKIVVEFLQKNQDATYEDLLNK 411

Query:   188 LQTATLPASVGV--LSEDQLLRHAQFICDQVLGFDDASEGTDETQLIVTPCIRTLIQLAG 245
             ++T   PA +     +ED LLRHAQF+ +QV  +D+A + +DE  +I+TPC+R LI+LAG
Sbjct:   412 IETTVPPAGLNFNRFTEDTLLRHAQFVVEQVESYDEAGD-SDEQPIIITPCMRDLIKLAG 470

Query:   246 VTFGQRKKLIASERGRVK-PVAAQKPTW--SKATTTSLVRDVFENFFKGQL--NEKHEGP 300
             VT G+R+   A+ R  V+ P   +K     +KATTT LV  +F+ FF  Q+  N K  G 
Sbjct:   471 VTLGKRR---AARRQAVRHPTKIEKDNKGPTKATTTKLVYLIFDTFFSDQIDQNNKDGGV 527

Query:   301 RKKRCGVCEACQQPDCGTCTACLDMVKFGGTGKAKQACIKRRCPNKAVQDAEDSDIELDG 360
             +++RCGVCE CQ PDCG C+AC DM+KFGG+G++KQAC KRRCPN AV++AED D  +D 
Sbjct:   528 KRQRCGVCEVCQAPDCGKCSACKDMIKFGGSGRSKQACQKRRCPNLAVKEAED-DENMDE 586

Query:   361 DEVEEKVVKATTKPSWKIKVTGSGKKQIEWQGEGEEMDSKL-YYKSALIGGEEVKVGDYV 419
             ++V    VK T K S + K     K +I W GE  + + K  YY    +  E ++VGD V
Sbjct:   587 EDVLP--VKDTKKMS-QTKKKKQTKNKISWVGEPLKTEGKKEYYMKVRVENEVLEVGDCV 643

Query:   420 MVESDDPNNPPPVGKVCYMYEDMKNFKTRKCHILWFARGQETVLEELSDPQELFLLEACD 479
              V  DDP++P  + ++  +++D +    +  H  WF RG +TVL E SDP ELFL++ C+
Sbjct:   644 SVSPDDPSHPLYLARITALWDDGE----KMFHAHWFCRGTDTVLGESSDPLELFLVDECE 699

Query:   480 DVSLNAVANLCQVKHFPISENWAMQGGCPQPTPPVDREDERSFYYRQTYDPLHARFCDVP 539
             D+ L+ +     V +   SENW M+GG  +    +D +D  SF+Y+  Y+   ARF + P
Sbjct:   700 DMQLSFIHGKVNVFYKAPSENWYMEGGMDEDIKVID-DDGESFFYQLHYEGECARF-ETP 757

Query:   540 NEMFSSGIDKY--CFSCDKAEEEEALSTPNLRNLTE--QGTTHEYYNCVSYEGEQYKLKS 595
              ++  S   KY  C SC + +E EA S P+     E  +  +  +Y  V+Y+GEQYK+  
Sbjct:   758 PKVTPSEDCKYKFCASCTRNKEREAESVPHAYEPLEDEESDSKVFYGLVNYKGEQYKVGD 817

Query:   596 CVYVNPDCFKFKSKPQSAVQNNKRPVE-DEELYPEAYRKLSDYMKGSNAYTPAPFGIGYI 654
              VY+ P+ F F  K  S V+ + R  + DE+LYPE YRK SDY+KGSN   P PF IG I
Sbjct:   818 SVYLPPEAFNFVVKAASPVKRSHRKDDVDEDLYPEYYRKSSDYIKGSNLDAPQPFRIGRI 877

Query:   655 VAIF-KKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDV 713
               IF  K+       S++ L + KFYRPENTH+  +  Y  D+N+LYWSDEE  VS+++V
Sbjct:   878 KEIFCNKRSNGKPDTSEIKLRLYKFYRPENTHKGPKGAYHSDINQLYWSDEEATVSMTEV 937

Query:   714 QGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFLXXXXXXXXXX 773
               +C V   ++L  S   +S++GP RFYF EAYN+KT+ F + P  A             
Sbjct:   938 LTRCRVEYAEDLVESVQDYSNKGPDRFYFLEAYNAKTKSFEDPPNHARSAVNKGKGKGKG 997

Query:   774 XNQTN---KPEE-KDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSX 829
               +      P+E +D+  + P + + LR L+VF+G GGLS G  ++G++ + WAIE    
Sbjct:   998 KGKGKGKAAPQEPQDQEPQEPVVPK-LRTLDVFSGCGGLSEGFHQAGISETHWAIEMWDP 1056

Query:   830 XXXXFKMNNPGCTVFVDDCNKILQRVIDNE 859
                 F++NNPG TVF +DCN +L+ V+  E
Sbjct:  1057 AAQAFRLNNPGTTVFTEDCNVLLKLVMSGE 1086

GO:0003677 "DNA binding" evidence=IEA

GO:0090116 "C-5 methylation of cytosine" evidence=IEA

GO:0006306 "DNA methylation" evidence=IEA;IMP

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003886 "DNA (cytosine-5-)-methyltransferase activity" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0032776 "DNA methylation on cytosine" evidence=IMP

GO:0035622 "intrahepatic bile duct development" evidence=IMP

GO:0044030 "regulation of DNA methylation" evidence=IMP

GO:0031017 "exocrine pancreas development" evidence=IMP

GO:0048565 "digestive tract development" evidence=IMP

GO:0010842 "retina layer formation" evidence=IMP

GO:0051216 "cartilage development" evidence=IMP

GO:0002088 "lens development in camera-type eye" evidence=IMP

GO:0060042 "retina morphogenesis in camera-type eye" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB\|Q92072 DNMT1 "DNA (cytosine-5)-methyltransferase 1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:94912 Dnmt1 "DNA methyltransferase (cytosine-5) 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|P26358 DNMT1 "DNA (cytosine-5)-methyltransferase 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q24K09 DNMT1 "DNA (cytosine-5)-methyltransferase 1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F5GX68 DNMT1 "Cytosine-specific methyltransferase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S3I5 DNMT1 "Cytosine-specific methyltransferase" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RHC6 DNMT1 "Cytosine-specific methyltransferase" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

RGD\|620979 Dnmt1 "DNA (cytosine-5-)-methyltransferase 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Z330 Dnmt1 "DNA (cytosine-5)-methyltransferase 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1.37	0.824
3rd Layer	2.1.1	0.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		1522
cd04711		137	cd04711, BAH_Dnmt1_II, BAH, or Bromo Adjacent Homo	4e-50
pfam12047		143	pfam12047, DNMT1-RFD, Cytosine specific DNA methyl	5e-30
cd04760		124	cd04760, BAH_Dnmt1_I, BAH, or Bromo Adjacent Homol	8e-30
COG0270		328	COG0270, Dcm, Site-specific DNA methylase [DNA rep	2e-20
pfam00145		320	pfam00145, DNA_methylase, C-5 cytosine-specific DN	7e-20
cd00315		275	cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specifi	7e-20
smart00439		121	smart00439, BAH, Bromo adjacent homology domain	1e-19
smart00439		121	smart00439, BAH, Bromo adjacent homology domain	3e-18
pfam02008		47	pfam02008, zf-CXXC, CXXC zinc finger domain	7e-18
pfam01426		120	pfam01426, BAH, BAH domain	9e-18
pfam01426		120	pfam01426, BAH, BAH domain	3e-17
COG0270		328	COG0270, Dcm, Site-specific DNA methylase [DNA rep	2e-15
pfam00145		320	pfam00145, DNA_methylase, C-5 cytosine-specific DN	2e-15
TIGR00675		315	TIGR00675, dcm, DNA-methyltransferase (dcm)	2e-14
cd04370		123	cd04370, BAH, BAH, or Bromo Adjacent Homology doma	2e-13
cd04370		123	cd04370, BAH, BAH, or Bromo Adjacent Homology doma	4e-12
cd04708		202	cd04708, BAH_plantDCM_II, BAH, or Bromo Adjacent H	4e-12
cd00315		275	cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specifi	2e-11
TIGR00675		315	TIGR00675, dcm, DNA-methyltransferase (dcm)	2e-11
cd04712		130	cd04712, BAH_DCM_I, BAH, or Bromo Adjacent Homolog	5e-11
cd00315		275	cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specifi	3e-09
pfam00145		320	pfam00145, DNA_methylase, C-5 cytosine-specific DN	2e-08
COG0270		328	COG0270, Dcm, Site-specific DNA methylase [DNA rep	3e-08
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-06
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-06
cd04719		128	cd04719, BAH_Orc1p_animal, BAH, or Bromo Adjacent	4e-06
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-06
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-06
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-06
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	9e-06
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	9e-06
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	9e-06
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-05
TIGR00675		315	TIGR00675, dcm, DNA-methyltransferase (dcm)	2e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
pfam08432		182	pfam08432, DUF1742, Fungal protein of unknown func	2e-05
COG4499		434	COG4499, COG4499, Predicted membrane protein [Func	2e-05
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-05
cd04714		121	cd04714, BAH_BAHCC1, BAH, or Bromo Adjacent Homolo	7e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	9e-05
pfam03247		106	pfam03247, Prothymosin, Prothymosin/parathymosin f	9e-05
cd04760		124	cd04760, BAH_Dnmt1_I, BAH, or Bromo Adjacent Homol	1e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
pfam09805		134	pfam09805, Nop25, Nucleolar protein 12 (25kDa)	2e-04
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-04
pfam09073		424	pfam09073, BUD22, BUD22	2e-04
COG5271		4600	COG5271, MDN1, AAA ATPase containing von Willebran	2e-04
PRK04195		482	PRK04195, PRK04195, replication factor C large sub	2e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
COG4499		434	COG4499, COG4499, Predicted membrane protein [Func	3e-04
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	3e-04
PRK04195		482	PRK04195, PRK04195, replication factor C large sub	3e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	3e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	3e-04
pfam07133		164	pfam07133, Merozoite_SPAM, Merozoite surface prote	3e-04
cd00315		275	cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specifi	4e-04
cd04710		135	cd04710, BAH_fungalPHD, BAH, or Bromo Adjacent Hom	4e-04
pfam09756		189	pfam09756, DDRGK, DDRGK domain	6e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-04
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	7e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-04
PRK12704		520	PRK12704, PRK12704, phosphodiesterase; Provisional	8e-04
pfam03247		106	pfam03247, Prothymosin, Prothymosin/parathymosin f	9e-04
pfam14153		185	pfam14153, Spore_coat_CotO, Spore coat protein Cot	9e-04
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.001
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.001
PRK04195		482	PRK04195, PRK04195, replication factor C large sub	0.001
pfam04615		728	pfam04615, Utp14, Utp14 protein	0.001
pfam06213		282	pfam06213, CobT, Cobalamin biosynthesis protein Co	0.001
pfam09507		427	pfam09507, CDC27, DNA polymerase subunit Cdc27	0.001
COG5137		279	COG5137, COG5137, Histone chaperone involved in ge	0.001
pfam07423		214	pfam07423, DUF1510, Protein of unknown function (D	0.001
TIGR02794		346	TIGR02794, tolA_full, TolA protein	0.001
PRK14160		211	PRK14160, PRK14160, heat shock protein GrpE; Provi	0.001
pfam00145		320	pfam00145, DNA_methylase, C-5 cytosine-specific DN	0.002
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.002
COG5271		4600	COG5271, MDN1, AAA ATPase containing von Willebran	0.002
pfam07133		164	pfam07133, Merozoite_SPAM, Merozoite surface prote	0.002
COG5137		279	COG5137, COG5137, Histone chaperone involved in ge	0.002
TIGR02794		346	TIGR02794, tolA_full, TolA protein	0.002
COG3064		387	COG3064, TolA, Membrane protein involved in colici	0.002
pfam07423		214	pfam07423, DUF1510, Protein of unknown function (D	0.003
COG3064		387	COG3064, TolA, Membrane protein involved in colici	0.003
pfam05672		171	pfam05672, MAP7, MAP7 (E-MAP-115) family	0.003
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.003
cd04715		159	cd04715, BAH_Orc1p_like, BAH, or Bromo Adjacent Ho	0.003
PRK04195		482	PRK04195, PRK04195, replication factor C large sub	0.004
pfam09756		189	pfam09756, DDRGK, DDRGK domain	0.004
PRK09510		387	PRK09510, tolA, cell envelope integrity inner memb	0.004
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
pfam08208		193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	0.004

>gnl\|CDD\|240062 cd04711, BAH_Dnmt1_II, BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins	Back alignment and domain information

 Score =  173 bits (440), Expect = 4e-50
 Identities = 72/136 (52%), Positives = 88/136 (64%), Gaps = 1/136 (0%)

Query: 623 DEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIF-KKKGKKNVSASDVFLTVKKFYRP 681
           DE+LYPE YRK SDY+KGSN   P PF IG I  IF  K+     + SD+ L + KFYRP
Sbjct: 1   DEDLYPEYYRKSSDYIKGSNLDAPEPFRIGRIKEIFCAKRSNGKPNESDIKLRINKFYRP 60

Query: 682 ENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFY 741
           ENTH+  + TY  D+N LYWSDEE  V  S VQG+C V   ++L  S   +S  GP RFY
Sbjct: 61  ENTHKGFKATYHADINMLYWSDEEATVDFSAVQGRCTVEYGEDLPESVQEYSGGGPDRFY 120

Query: 742 FNEAYNSKTEEFTNLP 757
           F EAYN+KT+ F + P
Sbjct: 121 FLEAYNAKTKSFEDPP 136

DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions. Length = 137

>gnl\|CDD\|221394 pfam12047, DNMT1-RFD, Cytosine specific DNA methyltransferase replication foci domain	Back alignment and domain information

>gnl\|CDD\|240107 cd04760, BAH_Dnmt1_I, BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins	Back alignment and domain information

>gnl\|CDD\|223348 COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|215747 pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase	Back alignment and domain information

>gnl\|CDD\|238192 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology	Back alignment and domain information

>gnl\|CDD\|214664 smart00439, BAH, Bromo adjacent homology domain	Back alignment and domain information

>gnl\|CDD\|214664 smart00439, BAH, Bromo adjacent homology domain	Back alignment and domain information

>gnl\|CDD\|202085 pfam02008, zf-CXXC, CXXC zinc finger domain	Back alignment and domain information

>gnl\|CDD\|216495 pfam01426, BAH, BAH domain	Back alignment and domain information

>gnl\|CDD\|216495 pfam01426, BAH, BAH domain	Back alignment and domain information

>gnl\|CDD\|223348 COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|215747 pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase	Back alignment and domain information

>gnl\|CDD\|233085 TIGR00675, dcm, DNA-methyltransferase (dcm)	Back alignment and domain information

>gnl\|CDD\|239835 cd04370, BAH, BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif)	Back alignment and domain information

>gnl\|CDD\|239835 cd04370, BAH, BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif)	Back alignment and domain information

>gnl\|CDD\|240059 cd04708, BAH_plantDCM_II, BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants	Back alignment and domain information

>gnl\|CDD\|238192 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology	Back alignment and domain information

>gnl\|CDD\|233085 TIGR00675, dcm, DNA-methyltransferase (dcm)	Back alignment and domain information

>gnl\|CDD\|240063 cd04712, BAH_DCM_I, BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1	Back alignment and domain information

>gnl\|CDD\|238192 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology	Back alignment and domain information

>gnl\|CDD\|215747 pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase	Back alignment and domain information

>gnl\|CDD\|223348 COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|240070 cd04719, BAH_Orc1p_animal, BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|233085 TIGR00675, dcm, DNA-methyltransferase (dcm)	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)	Back alignment and domain information

>gnl\|CDD\|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|240065 cd04714, BAH_BAHCC1, BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family	Back alignment and domain information

>gnl\|CDD\|240107 cd04760, BAH_Dnmt1_I, BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa)	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>gnl\|CDD\|220102 pfam09073, BUD22, BUD22	Back alignment and domain information

>gnl\|CDD\|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM)	Back alignment and domain information

>gnl\|CDD\|238192 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology	Back alignment and domain information

>gnl\|CDD\|240061 cd04710, BAH_fungalPHD, BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains	Back alignment and domain information

>gnl\|CDD\|220383 pfam09756, DDRGK, DDRGK domain	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|237177 PRK12704, PRK12704, phosphodiesterase; Provisional	Back alignment and domain information

>gnl\|CDD\|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family	Back alignment and domain information

>gnl\|CDD\|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>gnl\|CDD\|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|218177 pfam04615, Utp14, Utp14 protein	Back alignment and domain information

>gnl\|CDD\|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT	Back alignment and domain information

>gnl\|CDD\|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27	Back alignment and domain information

>gnl\|CDD\|227466 COG5137, COG5137, Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional	Back alignment and domain information

>gnl\|CDD\|215747 pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM)	Back alignment and domain information

>gnl\|CDD\|227466 COG5137, COG5137, Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)	Back alignment and domain information

>gnl\|CDD\|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|240066 cd04715, BAH_Orc1p_like, BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins	Back alignment and domain information

>gnl\|CDD\|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|220383 pfam09756, DDRGK, DDRGK domain	Back alignment and domain information

>gnl\|CDD\|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1522
TIGR00675		315	dcm DNA-methyltransferase (dcm). All proteins in t	100.0
PF00145		335	DNA_methylase: C-5 cytosine-specific DNA methylase	100.0
COG0270		328	Dcm Site-specific DNA methylase [DNA replication,	100.0
cd00315		275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	100.0
PRK10458		467	DNA cytosine methylase; Provisional	100.0
cd04708		202	BAH_plantDCM_II BAH, or Bromo Adjacent Homology do	100.0
cd04711		137	BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domai	100.0
cd04760		124	BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain	100.0
PF12047		146	DNMT1-RFD: Cytosine specific DNA methyltransferase	99.96
cd04712		130	BAH_DCM_I BAH, or Bromo Adjacent Homology domain,	99.95
cd04716		122	BAH_plantDCM_I BAH, or Bromo Adjacent Homology dom	99.93
KOG0919\|consensus		338		99.92
cd04710		135	BAH_fungalPHD BAH, or Bromo Adjacent Homology doma	99.9
cd04713		146	BAH_plant_3 BAH, or Bromo Adjacent Homology domain	99.88
cd04716		122	BAH_plantDCM_I BAH, or Bromo Adjacent Homology dom	99.88
cd04709		164	BAH_MTA BAH, or Bromo Adjacent Homology domain, as	99.87
cd04714		121	BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain,	99.87
cd04717		121	BAH_polybromo BAH, or Bromo Adjacent Homology doma	99.86
PF01426		119	BAH: BAH domain; InterPro: IPR001025 The BAH (brom	99.85
cd04713		146	BAH_plant_3 BAH, or Bromo Adjacent Homology domain	99.85
cd04370		123	BAH BAH, or Bromo Adjacent Homology domain (also c	99.84
smart00439		120	BAH Bromo adjacent homology domain.	99.83
PF01426		119	BAH: BAH domain; InterPro: IPR001025 The BAH (brom	99.83
cd04717		121	BAH_polybromo BAH, or Bromo Adjacent Homology doma	99.82
cd04715		159	BAH_Orc1p_like BAH, or Bromo Adjacent Homology dom	99.8
cd04370		123	BAH BAH, or Bromo Adjacent Homology domain (also c	99.8
cd04714		121	BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain,	99.8
smart00439		120	BAH Bromo adjacent homology domain.	99.79
cd04710		135	BAH_fungalPHD BAH, or Bromo Adjacent Homology doma	99.79
cd04709		164	BAH_MTA BAH, or Bromo Adjacent Homology domain, as	99.74
cd04721		130	BAH_plant_1 BAH, or Bromo Adjacent Homology domain	99.74
cd04708		202	BAH_plantDCM_II BAH, or Bromo Adjacent Homology do	99.73
cd04718		148	BAH_plant_2 BAH, or Bromo Adjacent Homology domain	99.71
cd04715		159	BAH_Orc1p_like BAH, or Bromo Adjacent Homology dom	99.7
cd04721		130	BAH_plant_1 BAH, or Bromo Adjacent Homology domain	99.67
cd04719		128	BAH_Orc1p_animal BAH, or Bromo Adjacent Homology d	99.66
cd04712		130	BAH_DCM_I BAH, or Bromo Adjacent Homology domain,	99.64
cd04760		124	BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain	99.61
cd04718		148	BAH_plant_2 BAH, or Bromo Adjacent Homology domain	99.61
cd04720		179	BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology do	99.49
cd04711		137	BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domai	99.49
KOG1886\|consensus		464		99.47
cd04720		179	BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology do	99.41
KOG1827\|consensus		629		99.36
PF02008		47	zf-CXXC: CXXC zinc finger domain; InterPro: IPR002	99.35
cd04719		128	BAH_Orc1p_animal BAH, or Bromo Adjacent Homology d	99.32
PF00145		335	DNA_methylase: C-5 cytosine-specific DNA methylase	99.31
COG0270		328	Dcm Site-specific DNA methylase [DNA replication,	99.28
TIGR00675		315	dcm DNA-methyltransferase (dcm). All proteins in t	99.17
KOG1886\|consensus		464		99.13
cd00315		275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	99.05
KOG1827\|consensus		629		99.02
PRK10458		467	DNA cytosine methylase; Provisional	98.91
KOG3554\|consensus		693		98.34
KOG3554\|consensus		693		96.41
KOG0919\|consensus		338		96.01
PF13659		117	Methyltransf_26: Methyltransferase domain; PDB: 3G	95.97
PF09445		163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	95.89
PF03602		183	Cons_hypoth95: Conserved hypothetical protein 95;	95.49
COG2263		198	Predicted RNA methylase [Translation, ribosomal st	95.37
PF02475		200	Met_10: Met-10+ like-protein; InterPro: IPR003402	95.17
TIGR00095		189	RNA methyltransferase, RsmD family. This model rep	94.96
COG2520		341	Predicted methyltransferase [General function pred	94.89
TIGR03704		251	PrmC_rel_meth putative protein-(glutamine-N5) meth	94.84
COG0742		187	N6-adenine-specific methylase [DNA replication, re	94.78
TIGR00095		189	RNA methyltransferase, RsmD family. This model rep	94.68
PRK10909		199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	94.63
TIGR02085		374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	94.6
PRK11783		702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	94.56
KOG3420\|consensus		185		94.53
COG2520		341	Predicted methyltransferase [General function pred	94.52
PF02475		200	Met_10: Met-10+ like-protein; InterPro: IPR003402	94.52
PHA03411		279	putative methyltransferase; Provisional	94.47
PF03602		183	Cons_hypoth95: Conserved hypothetical protein 95;	94.38
PRK03522		315	rumB 23S rRNA methyluridine methyltransferase; Rev	94.18
PHA03412		241	putative methyltransferase; Provisional	94.15
PRK15128		396	23S rRNA m(5)C1962 methyltransferase; Provisional	93.98
COG2263		198	Predicted RNA methylase [Translation, ribosomal st	93.46
TIGR00479		431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	93.46
PF09445		163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	93.36
COG0742		187	N6-adenine-specific methylase [DNA replication, re	93.07
COG2265		432	TrmA SAM-dependent methyltransferases related to t	92.63
TIGR00308		374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	92.51
PF13659		117	Methyltransf_26: Methyltransferase domain; PDB: 3G	92.14
PRK10909		199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	92.07
PF05175		170	MTS: Methyltransferase small domain; InterPro: IPR	91.53
TIGR00446		264	nop2p NOL1/NOP2/sun family putative RNA methylase.	91.41
PRK10901		427	16S rRNA methyltransferase B; Provisional	91.32
PRK13168		443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	90.69
TIGR02085		374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	90.47
cd02440		107	AdoMet_MTases S-adenosylmethionine-dependent methy	90.41
PRK15128		396	23S rRNA m(5)C1962 methyltransferase; Provisional	90.4
PRK05031		362	tRNA (uracil-5-)-methyltransferase; Validated	90.27
PRK05031		362	tRNA (uracil-5-)-methyltransferase; Validated	90.14
PRK04338		382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	90.11
TIGR03533		284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	90.09
smart00650		169	rADc Ribosomal RNA adenine dimethylases.	89.96
PRK14904		445	16S rRNA methyltransferase B; Provisional	89.83
TIGR00537		179	hemK_rel_arch HemK-related putative methylase. The	89.82
PRK04338		382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	89.75
PRK14901		434	16S rRNA methyltransferase B; Provisional	89.53
PF05958		352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	89.29
PHA03411		279	putative methyltransferase; Provisional	89.2
COG4123		248	Predicted O-methyltransferase [General function pr	88.89
PRK11783		702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	88.67
PRK14902		444	16S rRNA methyltransferase B; Provisional	88.64
TIGR00308		374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	88.35
TIGR02143		353	trmA_only tRNA (uracil-5-)-methyltransferase. This	88.07
PRK03522		315	rumB 23S rRNA methyluridine methyltransferase; Rev	87.4
KOG3420\|consensus		185		86.9
KOG1227\|consensus		351		86.7
COG2265		432	TrmA SAM-dependent methyltransferases related to t	85.99
TIGR01177		329	conserved hypothetical protein TIGR01177. This fam	85.98
TIGR00536		284	hemK_fam HemK family putative methylases. The gene	85.87
COG2890		280	HemK Methylase of polypeptide chain release factor	85.87
TIGR02143		353	trmA_only tRNA (uracil-5-)-methyltransferase. This	85.35
PRK14967		223	putative methyltransferase; Provisional	84.98
PRK11805		307	N5-glutamine S-adenosyl-L-methionine-dependent met	84.49
TIGR00479		431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	84.2
PRK09328		275	N5-glutamine S-adenosyl-L-methionine-dependent met	83.74
smart00650		169	rADc Ribosomal RNA adenine dimethylases.	83.67
KOG2730\|consensus		263		83.66
TIGR00563		426	rsmB ribosomal RNA small subunit methyltransferase	83.63
TIGR03704		251	PrmC_rel_meth putative protein-(glutamine-N5) meth	83.08
PF13847		152	Methyltransf_31: Methyltransferase domain; PDB: 3T	82.98
PF02005		377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	82.88
PF05958		352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	82.7
PHA03412		241	putative methyltransferase; Provisional	82.53
KOG1227\|consensus		351		81.28
PRK07402		196	precorrin-6B methylase; Provisional	80.81
PRK14903		431	16S rRNA methyltransferase B; Provisional	80.6

>TIGR00675 dcm DNA-methyltransferase (dcm)	Back alignment and domain information

Probab=100.00  E-value=2.8e-57  Score=531.04  Aligned_cols=308  Identities=26%  Similarity=0.448  Sum_probs=223.0

Q ss_pred             eeeeeeccCCCCcccccCCCceEEEEEcccHHHHHHHHHhCCCCceeccchHHHHHHhhcccccccccccCCCCCcccEE
Q psy16462        889 CLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEML  968 (1522)
Q Consensus       889 ~iDLFsG~GGls~G~~~aG~~~~v~AvE~d~~A~~ty~~N~p~~~~~~~Di~~l~~~v~~g~i~~~~~~~lp~~g~vDvL  968 (1522)
                      ++||||||||+|+||++||+ ++++|+|+|+.|++||++|||+ .++.+||.++..            ..+|   ++|+|
T Consensus         1 vidLF~G~GG~~~Gl~~aG~-~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~------------~~~~---~~dvl   63 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGF-KCVFASEIDKYAQKTYEANFGN-KVPFGDITKISP------------SDIP---DFDIL   63 (315)
T ss_pred             CEEEecCccHHHHHHHHcCC-eEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhh------------hhCC---CcCEE
Confidence            58999999999999999997 9999999999999999999998 667788887631            1233   69999


Q ss_pred             EeCCCCCccccccccCccccccchhhhHHHHHHHHHhhCCCEEEEEecchhhhccchhHHHHHHHhhhhccccccccccc
Q psy16462        969 CGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQ 1048 (1522)
Q Consensus       969 ~GGPPCQgFS~agr~~~~~~~d~rn~L~~~~lr~I~~~rPk~FvmENV~g~ls~~~~~~~~~~~~~l~~~gy~~~~~~l~ 1048 (1522)
                      +||||||+||.+|+.  ++.+|.|+.|+++|+++|+.++|++|+||||+||++.+++                       
T Consensus        64 ~gg~PCq~fS~ag~~--~~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV~~l~~~~~~-----------------------  118 (315)
T TIGR00675        64 LGGFPCQPFSIAGKR--KGFEDTRGTLFFEIVRILKEKKPKFFLLENVKGLVSHDKG-----------------------  118 (315)
T ss_pred             EecCCCcccchhccc--CCCCCchhhHHHHHHHHHhhcCCCEEEeeccHHHHhcccc-----------------------
Confidence            999999999999974  3567899999999999999999999999999999875432                       


Q ss_pred             CCCCCCCCCcccccccCCCCcccchhhhhhhccccccCCccceeccchhhhhhhhhHHHHHHHHHHHhCCceeEEEEEec
Q psy16462       1049 AGHFDPTPCYCIGCCTRGSSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQA 1128 (1522)
Q Consensus      1049 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~p~~~~lEnV~~~~~~~~~~~~~~il~~L~~lGY~v~~~vLnA 1128 (1522)
                                                                              ..|+.+++.|..+||++.+.+|||
T Consensus       119 --------------------------------------------------------~~~~~i~~~l~~~GY~v~~~~l~a  142 (315)
T TIGR00675       119 --------------------------------------------------------RTFKVIIETLEELGYKVYYKVLNA  142 (315)
T ss_pred             --------------------------------------------------------hHHHHHHHHHHhCCCEEEEEEEcH
Confidence                                                                    345677888899999999999999


Q ss_pred             CCCCCCCCCCEEEEEEec-CCCC-CCCCCCCCcccCCCccccccccccccccccccccCCCCCCcccHHHHhcCCCCCcC
Q psy16462       1129 GHFGVSQTRRRAIVLAAA-PGEV-LPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQN 1206 (1522)
Q Consensus      1129 ~~yGVPQ~R~RvfIVg~r-~g~~-lp~fP~PtH~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~vTv~dAI~DLp~~~~ 1206 (1522)
                      ++|||||+|+|+|+||++ .+.. .+.||.|+|.                            ....+++|++..++....
T Consensus       143 ~dyGvPQ~R~R~f~ia~r~~~~~~~~~~p~~~~~----------------------------~~~~~l~d~~~~~~~~~~  194 (315)
T TIGR00675       143 KDFGVPQNRERIYIVGFRDFDDKLNFEFPKPIYV----------------------------AKKKRIGDLLDLSVDLEE  194 (315)
T ss_pred             HHCCCCCCccEEEEEEEeCCCcCcCCCCCCCccc----------------------------ccccchHHhcccccCcCC
Confidence            999999999999999998 4432 2457776651                            011255665544332110


Q ss_pred             CCCccccCcccccchHHHHHHhhccCCCcccccCccccCcHHHHHHHhcCCCCCCCCCCCCCchhhhccCCccccccccc
Q psy16462       1207 GCKMEELPYKENALSHFQREMRKHVEKPTIISDHICKDMAPLVQARIKHIPTGEGSDWRDLPNIEVRLKDGTYTKKLQYT 1286 (1522)
Q Consensus      1207 g~~~~~~~y~~~p~s~fq~~iR~~~~~~~~l~~h~~~~~~~~~~~Ri~~Ip~~~G~~~~dlp~~~v~l~~g~~~~~l~~~ 1286 (1522)
                             .|                            ..+....+++..++  ++..|.+....       .    +   
T Consensus       195 -------~~----------------------------~~~~~~~~~~~~~~--~~~~~~~~~~~-------~----~---  223 (315)
T TIGR00675       195 -------KY----------------------------YLSEEKKNGLLLLL--ENMRKKEGTGE-------Q----I---  223 (315)
T ss_pred             -------cE----------------------------EeCHHHHHHHHHHh--hcccccccccc-------c----c---
Confidence                   00                            01222344555444  23333320000       0    0   


Q ss_pred             cccccCCCCCCCcccccccccCCCCCCCCccccccccccCccCCCCCCCCCccccccceecc-----CCCcceeecCCCC
Q psy16462       1287 HNDMKNGKSSTGALRGVCSCATSAKTPCDPLARQFGTLIPWCLPHTGNRHNNWCGLYGRLQW-----NGFFSTTITNPEP 1361 (1522)
Q Consensus      1287 ~~d~k~g~~~~~~lrg~~~~~~~~g~~~~p~~~~~~~l~p~~~p~~~~r~~~~~~~YgRL~~-----d~~~sttiT~~~~ 1361 (1522)
                       ..                                           ..+...|...+.++.|     +.+.++..+.. .
T Consensus       224 -~~-------------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~t~~~~~-~  258 (315)
T TIGR00675       224 -GS-------------------------------------------FYNRESKSSIIRTLSARGYTFVKGGKSVLIVP-H  258 (315)
T ss_pred             -ce-------------------------------------------eeccCCccceeeeeeccccccCCCCcceeecc-c
Confidence             00                                           0001112233444444     22212211111 1


Q ss_pred             CCCCCccccCCCCccCcHHHHHHhcCCCCCcccccCHhhHhhheecccCHHHHHHHHHHH
Q psy16462       1362 MGKQGRVLHPEQHRVVSVRECARSQGFPDHHKFHGTILEKHRQVGNAVPPPMGEALGREI 1421 (1522)
Q Consensus      1362 ~~k~g~~iHP~q~R~LTvREaARLQgFPD~y~F~Gs~~~~yrQIGNAVPP~la~aIg~~I 1421 (1522)
                        .. ..+||.++|.||||||||||||||+|+|.|+.+++|+||||||||+||++||++|
T Consensus       259 --~~-~~~hp~~~R~lT~RE~aRLQ~FPd~f~f~~s~~~~~~qiGNAVPp~la~~I~~~i  315 (315)
T TIGR00675       259 --KS-TVVHPGRIRRLTPRECARLQGFPDDFKFPVSDSQLYKQAGNAVVVPVIEAIAKQI  315 (315)
T ss_pred             --cc-eeccCCceeeCCHHHHHHHcCCCcccEeCCCHHHHHhhhCCcccHHHHHHHHhhC
Confidence              11 2389999999999999999999999999999999999999999999999999875

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2	Back alignment and domain information

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]	Back alignment and domain information

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology	Back alignment and domain information

>PRK10458 DNA cytosine methylase; Provisional	Back alignment and domain information

>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants	Back alignment and domain information

>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins	Back alignment and domain information

>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins	Back alignment and domain information

>PF12047 DNMT1-RFD: Cytosine specific DNA methyltransferase replication foci domain; InterPro: IPR022702 This domain is part of a cytosine specific DNA methyltransferase enzyme	Back alignment and domain information

>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1	Back alignment and domain information

>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants	Back alignment and domain information

>KOG0919\|consensus	Back alignment and domain information

>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains	Back alignment and domain information

>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function	Back alignment and domain information

>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants	Back alignment and domain information

>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins	Back alignment and domain information

>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins	Back alignment and domain information

>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2	Back alignment and domain information

>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation	Back alignment and domain information

>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function	Back alignment and domain information

>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif)	Back alignment and domain information

>smart00439 BAH Bromo adjacent homology domain	Back alignment and domain information

>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation	Back alignment and domain information

>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2	Back alignment and domain information

>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins	Back alignment and domain information

>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif)	Back alignment and domain information

>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins	Back alignment and domain information

>smart00439 BAH Bromo adjacent homology domain	Back alignment and domain information

>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains	Back alignment and domain information

>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins	Back alignment and domain information

>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function	Back alignment and domain information

>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants	Back alignment and domain information

>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function	Back alignment and domain information

>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins	Back alignment and domain information

>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function	Back alignment and domain information

>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p	Back alignment and domain information

>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1	Back alignment and domain information

>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins	Back alignment and domain information

>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function	Back alignment and domain information

>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p	Back alignment and domain information

>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins	Back alignment and domain information

>KOG1886\|consensus	Back alignment and domain information

>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p	Back alignment and domain information

>KOG1827\|consensus	Back alignment and domain information

>PF02008 zf-CXXC: CXXC zinc finger domain; InterPro: IPR002857 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p	Back alignment and domain information

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2	Back alignment and domain information

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00675 dcm DNA-methyltransferase (dcm)	Back alignment and domain information

>KOG1886\|consensus	Back alignment and domain information

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology	Back alignment and domain information

>KOG1827\|consensus	Back alignment and domain information

>PRK10458 DNA cytosine methylase; Provisional	Back alignment and domain information

>KOG3554\|consensus	Back alignment and domain information

>KOG3554\|consensus	Back alignment and domain information

>KOG0919\|consensus	Back alignment and domain information

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A	Back alignment and domain information

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Back alignment and domain information

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH	Back alignment and domain information

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family	Back alignment and domain information

>TIGR00095 RNA methyltransferase, RsmD family	Back alignment and domain information

>COG2520 Predicted methyltransferase [General function prediction only]	Back alignment and domain information

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific	Back alignment and domain information

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00095 RNA methyltransferase, RsmD family	Back alignment and domain information

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional	Back alignment and domain information

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB	Back alignment and domain information

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional	Back alignment and domain information

>KOG3420\|consensus	Back alignment and domain information

>COG2520 Predicted methyltransferase [General function prediction only]	Back alignment and domain information

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family	Back alignment and domain information

>PHA03411 putative methyltransferase; Provisional	Back alignment and domain information

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH	Back alignment and domain information

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed	Back alignment and domain information

>PHA03412 putative methyltransferase; Provisional	Back alignment and domain information

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional	Back alignment and domain information

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA	Back alignment and domain information

Back alignment and domain information

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]	Back alignment and domain information

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase	Back alignment and domain information

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A	Back alignment and domain information

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional	Back alignment and domain information

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases	Back alignment and domain information

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase	Back alignment and domain information

>PRK10901 16S rRNA methyltransferase B; Provisional	Back alignment and domain information

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed	Back alignment and domain information

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB	Back alignment and domain information

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)	Back alignment and domain information

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional	Back alignment and domain information

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated	Back alignment and domain information

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated	Back alignment and domain information

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional	Back alignment and domain information

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific	Back alignment and domain information

>smart00650 rADc Ribosomal RNA adenine dimethylases	Back alignment and domain information

>PRK14904 16S rRNA methyltransferase B; Provisional	Back alignment and domain information

>TIGR00537 hemK_rel_arch HemK-related putative methylase	Back alignment and domain information

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional	Back alignment and domain information

>PRK14901 16S rRNA methyltransferase B; Provisional	Back alignment and domain information

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2	Back alignment and domain information

>PHA03411 putative methyltransferase; Provisional	Back alignment and domain information

>COG4123 Predicted O-methyltransferase [General function prediction only]	Back alignment and domain information

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional	Back alignment and domain information

>PRK14902 16S rRNA methyltransferase B; Provisional	Back alignment and domain information

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase	Back alignment and domain information

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase	Back alignment and domain information

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed	Back alignment and domain information

>KOG3420\|consensus	Back alignment and domain information

>KOG1227\|consensus	Back alignment and domain information

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR01177 conserved hypothetical protein TIGR01177	Back alignment and domain information

>TIGR00536 hemK_fam HemK family putative methylases	Back alignment and domain information

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase	Back alignment and domain information

>PRK14967 putative methyltransferase; Provisional	Back alignment and domain information

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	Back alignment and domain information

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA	Back alignment and domain information

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	Back alignment and domain information

>smart00650 rADc Ribosomal RNA adenine dimethylases	Back alignment and domain information

>KOG2730\|consensus	Back alignment and domain information

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB	Back alignment and domain information

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific	Back alignment and domain information

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A	Back alignment and domain information

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2	Back alignment and domain information

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2	Back alignment and domain information

>PHA03412 putative methyltransferase; Provisional	Back alignment and domain information

>KOG1227\|consensus	Back alignment and domain information

>PRK07402 precorrin-6B methylase; Provisional	Back alignment and domain information

>PRK14903 16S rRNA methyltransferase B; Provisional	Back alignment and domain information

Homologous Structure Templates