Psyllid ID: psy16472

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630
MKLASETESSHRKFSAPRHGSMGFYPKKRSARHRVKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVHSNASCAKYFKSLG
cccccccccccccccccccccccEEccccccccccccccccccccccccccccccHHHccccccccccccccccccccEEEEEcccccccEEEEEccccccccccccEEEEEEEEEEccccEEEEEEEEEEcccccEEcEEEEcccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccEEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHcccccccccEEccccEEEEEEEEEcccEEEEEEEEEEEEcccccccEEEEEEcccccHHHHHHHHHHcccccccccccccccEEEEEEEEEEccEEEcEEccccccccccccccccccccccccccccccccccccccccccEEEEEEcEEEEEccccccccccccccccccEEcccccccccccccccccccccccEEEEEEccccccccccEEEcccEEEEEccccccccccccccccccccccccccEEEEccccEEEEEcccccccEEEEEEEEEEccccccccccEEEEEEEcccHHHHHHHHHHHHccccccccccccccEEEEEEEEEcccccEEEEccccccccccccc
ccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccHHHHHHccccEccccccccccccEEEHEEEEEEEEEEEEEccccccccccccccEEEEEEEEcccEEEEEEEEEEEEccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccEEEEEEEEccccccccccccccccccccccccccccccEEEEEEcccHccccccccEEEEEEEccccHHHHHHHHHHHHcccccHHHHHccccEEEEEEEEcccccccEEEcccccccccHHccHEEEEEcccccHHHHHHHHHHHcccccHHHHcccccHEEEEEEEcccccccEEEccccccccccccccccccccccccccccccccccccEEccccEEEEEEEEEEEEEEEcccccccEEEEEccccEcccccccccccccccccccccccccccccccEEccccEEEEEccEEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHccccccEEEEEEEEcHcccccccccccEEEEEEccccHHHHHHHHHHHHcccccHHHHHccccEEEEEEEEcccccccEEcccHHHHHHccccc
mklasetesshrkfsaprhgsmgfypkkrsaRHRVKkashrkfsaprhgsmgfypkkrsarhrgkvkcfpkddptkpvhlTAFIGYKAGMTHIVreadrpgskinkKEIVEAVtiletppmvIVGVIGyvetphglrSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHqnqqshtkdqpiqsnvnktqpdsheSHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHleqpipvgqvfaqdemidcigvtkgkgfkGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHleqpipvgqvfaqdemidcigvtkgkgfkgvtsrwhtkklprkthkglrkvacigawhpsrVQFTVAragqkgyhhrtELNKKIYRMGagihtkdgkvsvtsrwhtkklprkthkglrkvacigawhpsrVQFTVAragqkgyhhrtelFLCKKKYLSMVIKnnastdydlteksitpmggfphygevnndflmikgccmgpkkRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHleqpipvgqvfaqdemidcigvtkgkgfkeCVHSNASCAKYFKSLG
mklasetesshrkfsaprhgsmgfypkkrsarhrvkkashrkfsaprhgsmgfypkkrsarhrgkvkcfpkddptkpvHLTAFIGYKAGMTHIVReadrpgskinkKEIVEavtiletppmvIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVtkgkgfkgvtsrwhtkklprkthkglrKVACIGAWHPSRVQFTvaragqkgyhhrTELNKKIYRMGAgihtkdgkvsvtsrwhtkklprkthkglrKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVHSNASCAKYFKSLG
MKLASETESSHRKFSAPRHGSMGFYPKKRSARHRVKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTqnqqqslhqnqqshTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIgvtkgkgfkgvtSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITlrkmkllkkrqkkAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVHSNASCAKYFKSLG
***************************************************************************KPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAH**************************************************LMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVHSNASCAKYF****
**********************************************RHGSMGFYPKKRS**************PTKPVHLTAFIGYKAGMTHIVREA*********KEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKA********************LRKMAKYCKVIRVIAHTQNQQQS**********************PDSHESHVQMKL**K*QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLL*********MEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWH*****************IGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVSVTSRWHTKKLPRK***********GAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVHSNASCA**FK***
*****************RHGSMGFYPKK*****************PRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSR*************KLGKKTIAQDLRKMAKYCKVIRVIAHTQ**********************************************AHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVHSNASCAKYFKSLG
********************************************************KRSA*HRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQ***TKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVI*NNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVHSNASCAKYF****
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MKLASETESSHRKFSAPRHGSMGFYPKKRSARHRVKKASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGKVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSITPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKECVHSNASCAKYFKSLG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query630 2.2.26 [Sep-21-2011]
O16797416 60S ribosomal protein L3 yes N/A 0.363 0.550 0.690 1e-106
P39023403 60S ribosomal protein L3 yes N/A 0.363 0.568 0.667 1e-101
P21531403 60S ribosomal protein L3 yes N/A 0.363 0.568 0.664 1e-101
Q4R5Q0403 60S ribosomal protein L3 N/A N/A 0.363 0.568 0.664 1e-101
P27659403 60S ribosomal protein L3 yes N/A 0.363 0.568 0.660 1e-101
P39872403 60S ribosomal protein L3 yes N/A 0.363 0.568 0.660 1e-100
P49149402 60S ribosomal protein L3 N/A N/A 0.363 0.569 0.656 1e-99
P50880401 60S ribosomal protein L3 yes N/A 0.363 0.571 0.611 3e-92
Q9NBK4401 60S ribosomal protein L3 N/A N/A 0.363 0.571 0.607 4e-92
P36584388 60S ribosomal protein L3- yes N/A 0.465 0.755 0.467 2e-86
>sp|O16797|RL3_DROME 60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=2 SV=3 Back     alignment and function desciption
 Score =  387 bits (995), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/265 (69%), Positives = 208/265 (78%), Gaps = 36/265 (13%)

Query: 39  SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
           SHRKFSAPRHGSM FYPKKRSARHRGKVK FPKDD +KPVHLT FIGYKAGMTHIVREAD
Sbjct: 2   SHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREAD 61

Query: 99  RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
           RPGSKINKKE+VEAVT+LETPPM++VG +GY+ETP GLR+   VWA+HLS+ECRRRFYKN
Sbjct: 62  RPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 121

Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
           WYKS++KAFTKASKKW D LGKK+I  D RKM +YCKVIRVIAH+               
Sbjct: 122 WYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHS--------------- 166

Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
                                Q++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI
Sbjct: 167 ---------------------QIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPI 205

Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
            V  VF QDEMIDC+GVTKGKGFKG
Sbjct: 206 QVSNVFGQDEMIDCVGVTKGKGFKG 230
The L3 protein is a component of the large subunit of cytoplasmic ribosomes.
Drosophila melanogaster (taxid: 7227)
>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2 Back     alignment and function description
>sp|P21531|RL3_RAT 60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3 Back     alignment and function description
>sp|Q4R5Q0|RL3_MACFA 60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3 Back     alignment and function description
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=3 Back     alignment and function description
>sp|P39872|RL3_BOVIN 60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2 Back     alignment and function description
>sp|P49149|RL3_TOXCA 60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2 Back     alignment and function description
>sp|P50880|RL3_CAEEL 60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=2 SV=1 Back     alignment and function description
>sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2 Back     alignment and function description
>sp|P36584|RL3B_SCHPO 60S ribosomal protein L3-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl3b PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query630
70909601410 ribosomal protein L3e [Scarabaeus latico 0.363 0.558 0.732 1e-111
189240524409 PREDICTED: similar to ribosomal protein 0.363 0.559 0.732 1e-111
62083393412 ribosomal protein L3 [Lysiphlebus testac 0.363 0.555 0.720 1e-109
380012028415 PREDICTED: 60S ribosomal protein L3-like 0.363 0.551 0.698 1e-108
112982798413 ribosomal protein L3 [Bombyx mori] gi|54 0.363 0.554 0.709 1e-108
66566113415 PREDICTED: 60S ribosomal protein L3 [Api 0.363 0.551 0.698 1e-108
350424727414 PREDICTED: 60S ribosomal protein L3-like 0.363 0.553 0.694 1e-107
332028947484 60S ribosomal protein L3 [Acromyrmex ech 0.363 0.473 0.694 1e-107
340724650414 PREDICTED: 60S ribosomal protein L3-like 0.363 0.553 0.690 1e-107
383848395432 PREDICTED: 60S ribosomal protein L3-like 0.363 0.530 0.690 1e-107
>gi|70909601|emb|CAJ17226.1| ribosomal protein L3e [Scarabaeus laticollis] Back     alignment and taxonomy information
 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/265 (73%), Positives = 219/265 (82%), Gaps = 36/265 (13%)

Query: 39  SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
           SHRKFSAPRHGSMGFYPKKRS RHRGKVK FP+DDP+KPVHLTAFIGYKAGMTH++READ
Sbjct: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPEDDPSKPVHLTAFIGYKAGMTHVLREAD 61

Query: 99  RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
           RPGSKINKKEIVEAVTILETPPMVIVGV+GY+ETPHGLR+  TVWAEHLS++CRRRFYKN
Sbjct: 62  RPGSKINKKEIVEAVTILETPPMVIVGVVGYIETPHGLRALATVWAEHLSEDCRRRFYKN 121

Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
           WYKS++KAFTKASKKWQD+LGKK+I +DL+K+ KYCKV+RVIAHT               
Sbjct: 122 WYKSKKKAFTKASKKWQDELGKKSIERDLKKIVKYCKVVRVIAHT--------------- 166

Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
                                QMKLLK+RQKKAH+MEIQLNGG++ DK+ WAR+HLE+PI
Sbjct: 167 ---------------------QMKLLKQRQKKAHIMEIQLNGGTIDDKVKWAREHLEKPI 205

Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
           PV  VFAQDEMIDCIGVTKGKG+KG
Sbjct: 206 PVNNVFAQDEMIDCIGVTKGKGYKG 230

Source: Scarabaeus laticollis

Species: Scarabaeus laticollis

Genus: Scarabaeus

Family: Scarabaeidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|189240524|ref|XP_971875.2| PREDICTED: similar to ribosomal protein L3e [Tribolium castaneum] gi|270011378|gb|EFA07826.1| hypothetical protein TcasGA2_TC005395 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|62083393|gb|AAX62421.1| ribosomal protein L3 [Lysiphlebus testaceipes] gi|62083395|gb|AAX62422.1| ribosomal protein L3 variant 1 [Lysiphlebus testaceipes] Back     alignment and taxonomy information
>gi|380012028|ref|XP_003690092.1| PREDICTED: 60S ribosomal protein L3-like [Apis florea] Back     alignment and taxonomy information
>gi|112982798|ref|NP_001037126.1| ribosomal protein L3 [Bombyx mori] gi|54609193|gb|AAV34812.1| ribosomal protein L3 [Bombyx mori] Back     alignment and taxonomy information
>gi|66566113|ref|XP_624821.1| PREDICTED: 60S ribosomal protein L3 [Apis mellifera] Back     alignment and taxonomy information
>gi|350424727|ref|XP_003493892.1| PREDICTED: 60S ribosomal protein L3-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|332028947|gb|EGI68965.1| 60S ribosomal protein L3 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|340724650|ref|XP_003400694.1| PREDICTED: 60S ribosomal protein L3-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383848395|ref|XP_003699836.1| PREDICTED: 60S ribosomal protein L3-like [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query630
FB|FBgn0020910416 RpL3 "Ribosomal protein L3" [D 0.261 0.396 0.818 2.3e-131
RGD|735105403 Rpl3 "ribosomal protein L3" [R 0.261 0.409 0.775 2.4e-123
UNIPROTKB|P39023403 RPL3 "60S ribosomal protein L3 0.261 0.409 0.781 3.1e-123
UNIPROTKB|F1NEM8403 RPL3 "Uncharacterized protein" 0.261 0.409 0.775 1.3e-122
UNIPROTKB|F1NLW1402 RPL3 "Uncharacterized protein" 0.261 0.410 0.775 1.3e-122
MGI|MGI:1351605403 Rpl3 "ribosomal protein L3" [M 0.261 0.409 0.769 1.7e-122
UNIPROTKB|F1SNY2403 RPL3 "60S ribosomal protein L3 0.261 0.409 0.775 2.2e-122
UNIPROTKB|F1PLN2403 RPL3 "Uncharacterized protein" 0.261 0.409 0.769 3.5e-122
ZFIN|ZDB-GENE-030131-1291403 rpl3 "ribosomal protein L3" [D 0.261 0.409 0.745 3.5e-122
UNIPROTKB|P39872403 RPL3 "60S ribosomal protein L3 0.261 0.409 0.775 4.5e-122
FB|FBgn0020910 RpL3 "Ribosomal protein L3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 758 (271.9 bits), Expect = 2.3e-131, Sum P(2) = 2.3e-131
 Identities = 135/165 (81%), Positives = 150/165 (90%)

Query:    39 SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
             SHRKFSAPRHGSM FYPKKRSARHRGKVK FPKDD +KPVHLT FIGYKAGMTHIVREAD
Sbjct:     2 SHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREAD 61

Query:    99 RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
             RPGSKINKKE+VEAVT+LETPPM++VG +GY+ETP GLR+   VWA+HLS+ECRRRFYKN
Sbjct:    62 RPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 121

Query:   159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHT 203
             WYKS++KAFTKASKKW D LGKK+I  D RKM +YCKVIRVIAH+
Sbjct:   122 WYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHS 166
GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS;NAS
GO:0006412 "translation" evidence=ISS;NAS
GO:0003735 "structural constituent of ribosome" evidence=ISS;NAS
GO:0022626 "cytosolic ribosome" evidence=NAS
GO:0000022 "mitotic spindle elongation" evidence=IMP
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0051297 "centrosome organization" evidence=IMP
GO:0051298 "centrosome duplication" evidence=IMP
RGD|735105 Rpl3 "ribosomal protein L3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P39023 RPL3 "60S ribosomal protein L3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NEM8 RPL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NLW1 RPL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1351605 Rpl3 "ribosomal protein L3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SNY2 RPL3 "60S ribosomal protein L3" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PLN2 RPL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1291 rpl3 "ribosomal protein L3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P39872 RPL3 "60S ribosomal protein L3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6FTJ2RL3_CANGANo assigned EC number0.54330.36030.5865yesN/A
P35684RL3_ORYSJNo assigned EC number0.57730.36500.5912yesN/A
P39872RL3_BOVINNo assigned EC number0.66030.36340.5682yesN/A
Q6BXM5RL3_DEBHANo assigned EC number0.53960.36030.5835yesN/A
P22738RL32_ARATHNo assigned EC number0.58490.36500.5897yesN/A
P39023RL3_HUMANNo assigned EC number0.66790.36340.5682yesN/A
Q8NKF4RL3_ASPFUNo assigned EC number0.57730.36190.5816yesN/A
P50880RL3_CAEELNo assigned EC number0.61130.36340.5710yesN/A
P14126RL3_YEASTNo assigned EC number0.54510.35870.5839yesN/A
P34113RL3_DICDINo assigned EC number0.54880.36340.5753yesN/A
Q759R7RL3_ASHGONo assigned EC number0.55260.35870.5839yesN/A
O16797RL3_DROMENo assigned EC number0.69050.36340.5504yesN/A
P27659RL3_MOUSENo assigned EC number0.66030.36340.5682yesN/A
Q6CJR7RL3_KLULANo assigned EC number0.53580.36030.5865yesN/A
P21531RL3_RATNo assigned EC number0.66410.36340.5682yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query630
PTZ00103390 PTZ00103, PTZ00103, 60S ribosomal protein L3; Prov 1e-118
PTZ00103390 PTZ00103, PTZ00103, 60S ribosomal protein L3; Prov 4e-64
PTZ00103390 PTZ00103, PTZ00103, 60S ribosomal protein L3; Prov 3e-58
PRK04231337 PRK04231, rpl3p, 50S ribosomal protein L3P; Review 3e-50
pfam00297199 pfam00297, Ribosomal_L3, Ribosomal protein L3 1e-42
TIGR03626330 TIGR03626, L3_arch, archaeal ribosomal protein L3 4e-42
PRK04231337 PRK04231, rpl3p, 50S ribosomal protein L3P; Review 5e-36
TIGR03626330 TIGR03626, L3_arch, archaeal ribosomal protein L3 1e-33
COG0087218 COG0087, RplC, Ribosomal protein L3 [Translation, 6e-31
PRK04231337 PRK04231, rpl3p, 50S ribosomal protein L3P; Review 2e-26
TIGR03626330 TIGR03626, L3_arch, archaeal ribosomal protein L3 1e-25
pfam00297199 pfam00297, Ribosomal_L3, Ribosomal protein L3 4e-23
pfam00297199 pfam00297, Ribosomal_L3, Ribosomal protein L3 3e-22
PTZ00103 390 PTZ00103, PTZ00103, 60S ribosomal protein L3; Prov 6e-21
COG0087218 COG0087, RplC, Ribosomal protein L3 [Translation, 4e-13
pfam00297199 pfam00297, Ribosomal_L3, Ribosomal protein L3 5e-10
PRK04231 337 PRK04231, rpl3p, 50S ribosomal protein L3P; Review 8e-10
COG0087218 COG0087, RplC, Ribosomal protein L3 [Translation, 4e-09
COG0087218 COG0087, RplC, Ribosomal protein L3 [Translation, 3e-08
TIGR03626 330 TIGR03626, L3_arch, archaeal ribosomal protein L3 4e-08
COG0087218 COG0087, RplC, Ribosomal protein L3 [Translation, 2e-07
TIGR03625202 TIGR03625, L3_bact, 50S ribosomal protein L3, bact 7e-04
PRK00001210 PRK00001, rplC, 50S ribosomal protein L3; Validate 9e-04
>gnl|CDD|240267 PTZ00103, PTZ00103, 60S ribosomal protein L3; Provisional Back     alignment and domain information 
 Score =  356 bits (916), Expect = e-118
 Identities = 153/281 (54%), Positives = 190/281 (67%), Gaps = 40/281 (14%)

Query: 39  SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
           SHRKF  PRHGS+GF P+KR  RHRG+++ FPKDDPT+P HLTAF+GYKAGMTHIVR+ D
Sbjct: 2   SHRKFEHPRHGSLGFLPRKRCRRHRGRIRSFPKDDPTQPPHLTAFMGYKAGMTHIVRDVD 61

Query: 99  RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
           RPGSK++KKE+VEAVTI+E PPMV+VG++GY ETP GLR+  TVWA HLS E RRRFYKN
Sbjct: 62  RPGSKLHKKEVVEAVTIIEAPPMVVVGIVGYRETPRGLRALTTVWAHHLSDEFRRRFYKN 121

Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHT 218
           WYKS++KAFTK  K       KK   + L+++ KYC VIRVIAHT               
Sbjct: 122 WYKSKKKAFTKYKKFAAT---KKAEERTLKRIKKYCSVIRVIAHT--------------- 163

Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
                                Q   L   QKKAH+MEIQ+NGGSVA+K+ +A+  LE+ +
Sbjct: 164 ---------------------QPSKLPLGQKKAHVMEIQVNGGSVAEKVDFAKSLLEKEV 202

Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH 319
           PV  VF Q+EMID IGVTKG GF+G ++    + +  +K H
Sbjct: 203 PVDSVFQQNEMIDVIGVTKGHGFEG-VVKRWGVTRLPRKTH 242

Length = 390
>gnl|CDD|240267 PTZ00103, PTZ00103, 60S ribosomal protein L3; Provisional Back     alignment and domain information
>gnl|CDD|240267 PTZ00103, PTZ00103, 60S ribosomal protein L3; Provisional Back     alignment and domain information
>gnl|CDD|235260 PRK04231, rpl3p, 50S ribosomal protein L3P; Reviewed Back     alignment and domain information
>gnl|CDD|144036 pfam00297, Ribosomal_L3, Ribosomal protein L3 Back     alignment and domain information
>gnl|CDD|234286 TIGR03626, L3_arch, archaeal ribosomal protein L3 Back     alignment and domain information
>gnl|CDD|235260 PRK04231, rpl3p, 50S ribosomal protein L3P; Reviewed Back     alignment and domain information
>gnl|CDD|234286 TIGR03626, L3_arch, archaeal ribosomal protein L3 Back     alignment and domain information
>gnl|CDD|223165 COG0087, RplC, Ribosomal protein L3 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235260 PRK04231, rpl3p, 50S ribosomal protein L3P; Reviewed Back     alignment and domain information
>gnl|CDD|234286 TIGR03626, L3_arch, archaeal ribosomal protein L3 Back     alignment and domain information
>gnl|CDD|144036 pfam00297, Ribosomal_L3, Ribosomal protein L3 Back     alignment and domain information
>gnl|CDD|144036 pfam00297, Ribosomal_L3, Ribosomal protein L3 Back     alignment and domain information
>gnl|CDD|240267 PTZ00103, PTZ00103, 60S ribosomal protein L3; Provisional Back     alignment and domain information
>gnl|CDD|223165 COG0087, RplC, Ribosomal protein L3 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|144036 pfam00297, Ribosomal_L3, Ribosomal protein L3 Back     alignment and domain information
>gnl|CDD|235260 PRK04231, rpl3p, 50S ribosomal protein L3P; Reviewed Back     alignment and domain information
>gnl|CDD|223165 COG0087, RplC, Ribosomal protein L3 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|223165 COG0087, RplC, Ribosomal protein L3 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234286 TIGR03626, L3_arch, archaeal ribosomal protein L3 Back     alignment and domain information
>gnl|CDD|223165 COG0087, RplC, Ribosomal protein L3 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234285 TIGR03625, L3_bact, 50S ribosomal protein L3, bacterial Back     alignment and domain information
>gnl|CDD|234564 PRK00001, rplC, 50S ribosomal protein L3; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 630
PTZ00103390 60S ribosomal protein L3; Provisional 100.0
KOG0746|consensus384 100.0
PRK04231337 rpl3p 50S ribosomal protein L3P; Reviewed 100.0
TIGR03626330 L3_arch archaeal ribosomal protein L3. This model 100.0
PF00297263 Ribosomal_L3: Ribosomal protein L3; InterPro: IPR0 100.0
COG0087218 RplC Ribosomal protein L3 [Translation, ribosomal 100.0
CHL00143207 rpl3 ribosomal protein L3; Validated 100.0
TIGR03625202 L3_bact 50S ribosomal protein L3, bacterial. This 100.0
PRK00001210 rplC 50S ribosomal protein L3; Validated 100.0
PTZ00103390 60S ribosomal protein L3; Provisional 100.0
KOG3141|consensus310 100.0
PRK04231337 rpl3p 50S ribosomal protein L3P; Reviewed 100.0
TIGR03626330 L3_arch archaeal ribosomal protein L3. This model 100.0
PF00297263 Ribosomal_L3: Ribosomal protein L3; InterPro: IPR0 99.98
TIGR03625202 L3_bact 50S ribosomal protein L3, bacterial. This 99.96
CHL00143207 rpl3 ribosomal protein L3; Validated 99.96
PRK00001210 rplC 50S ribosomal protein L3; Validated 99.96
KOG3141|consensus310 99.92
KOG0746|consensus384 99.92
COG0087218 RplC Ribosomal protein L3 [Translation, ribosomal 99.73
>PTZ00103 60S ribosomal protein L3; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4e-123  Score=967.31  Aligned_cols=373  Identities=65%  Similarity=1.096  Sum_probs=348.9

Q ss_pred             cccCCCCCCCccCccccccccccccCCcccccccCCCCCCcEEeeeeeeeccCeEEEEeecCCCCCCCCceEEEEEEeee
Q psy16472         38 ASHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILE  117 (630)
Q Consensus        38 ~~~rk~s~Prhgslgf~prkrs~~~~~~v~~~pk~~~~~p~~l~~f~GyKagmthiv~~~~r~~s~~~~ke~~~~vTi~e  117 (630)
                      ||||||++||||||||+|||||++++|+|++||+||.++|+||+||+|||||||||++++|||+|+++++|+++||||||
T Consensus         1 MshRk~~~PR~GSLgf~PRKRa~~~~~rvrswP~dd~~~~p~L~aF~GyKAGMTHvv~~~drp~S~~~~kEv~~~VTIiE   80 (390)
T PTZ00103          1 MSHRKFEHPRHGSLGFLPRKRCRRHRGRIRSFPKDDPTQPPHLTAFMGYKAGMTHIVRDVDRPGSKLHKKEVVEAVTIIE   80 (390)
T ss_pred             CCCCCCCCCCCCcCCcCCccccccCCCCcccCCCcCCCCCceEeeeeeeccCCeEEEEecCCCCCCcCCCeEEeeeEEEe
Confidence            89999999999999999999999999999999999998888999999999999999999999999999999999999999


Q ss_pred             cCcEEEEEEEEEeeCCCCcchhhhhhccccChHHHhhhhhhhhhhHHHHhHHhhhhhhhhhhhHHHHHHHHHhhccceEE
Q psy16472        118 TPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVI  197 (630)
Q Consensus       118 ~pp~~vvg~~~y~~~~~gl~~~~~~~a~~~~~~~~r~~~k~~~k~~~ka~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i  197 (630)
                      ||||+|+|+++|.+||+||++++||||++|++||.|+|||||++|+++||+++.++|.+   ++++++.++.|.++|.+|
T Consensus        81 tPPm~V~GirgY~~tp~Gl~~l~~vwA~~l~~e~~rr~yk~~~~s~k~af~k~~~~~~~---~~~~~~~~~~l~k~~~~I  157 (390)
T PTZ00103         81 APPMVVVGIVGYRETPRGLRALTTVWAHHLSDEFRRRFYKNWYKSKKKAFTKYKKFAAT---KKAEERTLKRIKKYCSVI  157 (390)
T ss_pred             CCCeEEEEEEEEEECCCCcEEeEEEeeccCcHHHhhhhccccchhhhhhhhhhhhhhcc---hhhHHHHHHHHhhcccEE
Confidence            99999999999999999999999999999999999999999999999999999887765   456777788888899999


Q ss_pred             EEEEeecchhhccccccccCCCCcccccccCCCCCCCchhhHHHHHhhhhhhhceEeEEEecCCchhhHHHHHHHhhcCc
Q psy16472        198 RVIAHTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP  277 (630)
Q Consensus       198 r~i~~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~qKkah~me~q~ngG~i~~Kv~wa~~~lEkq  277 (630)
                      |+|+||||                                    ++++                                
T Consensus       158 Rvi~hTqp------------------------------------~~~~--------------------------------  169 (390)
T PTZ00103        158 RVIAHTQP------------------------------------SKLP--------------------------------  169 (390)
T ss_pred             EEEEEcch------------------------------------hhcC--------------------------------
Confidence            99999996                                    4444                                


Q ss_pred             cccceeeccceeeEEeeeecccccchhhhhhhhhhcccCCceEEEEEeCCCChhhhhHHhhhcCCceecccccccCCcEE
Q psy16472        278 IPVGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI  357 (630)
Q Consensus       278 vPV~~Vf~qde~idvigvtKgkGy~g~m~g~kllg~~~KK~~i~Eiqv~gg~~~~~~e~A~~lLGKkIgmtqVF~~Ge~V  357 (630)
                                                         ++|||||||||||||+++++|+|||+++||++|++++||++||+|
T Consensus       170 -----------------------------------l~kKkp~imEiqv~GGsv~~k~d~a~~llgk~i~v~dvF~~ge~V  214 (390)
T PTZ00103        170 -----------------------------------LGQKKAHVMEIQVNGGSVAEKVDFAKSLLEKEVPVDSVFQQNEMI  214 (390)
T ss_pred             -----------------------------------cCCcCccEEEEeecCCCHHHHHHHHHHHhcCeechhhhccCCCEe
Confidence                                               567788888888888888888999999999999999999999999


Q ss_pred             EEEEEeeccceeeeEEeeccCCCCCcCcCCcccccccCCCCCcceEEeEeecCcCCCeeeeEEeceEEEeeeeeecCCCc
Q psy16472        358 DCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDGK  437 (630)
Q Consensus       358 DVTgVTKGKGYqGVqkRwG~kk~p~KthkGhRk~GsIG~~~P~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~~vdvgkGf  437 (630)
                      ||+|||||+|||||++|||++++|+++|++||++||||+|+|+||+++++|+||||||++|++|++|+++|...|     
T Consensus       215 DVigvTKGKGfqGvvKRwg~~~~p~ktH~~~RkvGsiG~w~P~RV~~~v~~aGQmG~h~rTe~Nk~I~rI~~~~~-----  289 (390)
T PTZ00103        215 DVIGVTKGHGFEGVVKRWGVTRLPRKTHRGLRKVACIGAWHPARVQYTVPRAGQHGYHHRTELNKKIYRIGVAED-----  289 (390)
T ss_pred             eeEEEEcCCccccCeeccccCCCCccccCCCCCCCccCCCCCCcccCCCccCcCCCCceEEEeccEEEEEcCCCC-----
Confidence            999999999999999999999999779999999999999999999999999999999999999999999995211     


Q ss_pred             eeeeeccccCCCCCCCCCCCCCCCccCCCCCCCcccCCCCCCcCCCeEEEEEeeccccchhhhhcCCCccccccceEEEe
Q psy16472        438 VSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSIT  517 (630)
Q Consensus       438 ~Gv~KR~~f~~~p~shg~~hR~~GsiG~~~P~rV~~g~km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~~I~  517 (630)
                                                                                      .++++|+|||+..+||
T Consensus       290 ----------------------------------------------------------------~~~~~t~~~~~~~~It  305 (390)
T PTZ00103        290 ----------------------------------------------------------------PNNATTEADLTEKTIT  305 (390)
T ss_pred             ----------------------------------------------------------------cccccccccccccccc
Confidence                                                                            1457789999999999


Q ss_pred             cCCCCCcccccCCcEEEEecccccCcCcEEEEEechhhhhhhhhcccCCceEEEEEccccccccccccCC
Q psy16472        518 PMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ  587 (630)
Q Consensus       518 p~ggf~~yg~V~~n~i~vKGsVpG~k~~~v~ir~~il~~~R~kk~~l~eiqLk~IstsSK~GhgrfqLek  587 (630)
                      |||||+|||+|+|||||||||||||++++|+||++++++  +++.++++|+|+|||||||+||||||+.+
T Consensus       306 P~GGF~hYG~V~~d~imiKGsVpGp~kr~v~lR~ai~~~--~~~~~~~~~~lkfidtssk~ghgrfqt~~  373 (390)
T PTZ00103        306 PMGGFPHYGTVRNDFLMLKGCVVGPKKRVITLRKSLVPQ--TSRKALEKITLKFIDTSSKIGHGRFQTKE  373 (390)
T ss_pred             cCCCccccceecCCEEEEeccccCCCCceEEEehhhccc--cccccccccceeEeecccccCcccccChH
Confidence            999999999999999999999999999999999999877  55689999999999999999999999853

>KOG0746|consensus Back     alignment and domain information
>PRK04231 rpl3p 50S ribosomal protein L3P; Reviewed Back     alignment and domain information
>TIGR03626 L3_arch archaeal ribosomal protein L3 Back     alignment and domain information
>PF00297 Ribosomal_L3: Ribosomal protein L3; InterPro: IPR000597 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>COG0087 RplC Ribosomal protein L3 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00143 rpl3 ribosomal protein L3; Validated Back     alignment and domain information
>TIGR03625 L3_bact 50S ribosomal protein L3, bacterial Back     alignment and domain information
>PRK00001 rplC 50S ribosomal protein L3; Validated Back     alignment and domain information
>PTZ00103 60S ribosomal protein L3; Provisional Back     alignment and domain information
>KOG3141|consensus Back     alignment and domain information
>PRK04231 rpl3p 50S ribosomal protein L3P; Reviewed Back     alignment and domain information
>TIGR03626 L3_arch archaeal ribosomal protein L3 Back     alignment and domain information
>PF00297 Ribosomal_L3: Ribosomal protein L3; InterPro: IPR000597 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>TIGR03625 L3_bact 50S ribosomal protein L3, bacterial Back     alignment and domain information
>CHL00143 rpl3 ribosomal protein L3; Validated Back     alignment and domain information
>PRK00001 rplC 50S ribosomal protein L3; Validated Back     alignment and domain information
>KOG3141|consensus Back     alignment and domain information
>KOG0746|consensus Back     alignment and domain information
>COG0087 RplC Ribosomal protein L3 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query630
2zkr_b403 Structure Of A Mammalian Ribosomal 60s Subunit With 1e-101
2zkr_b403 Structure Of A Mammalian Ribosomal 60s Subunit With 1e-50
2zkr_b403 Structure Of A Mammalian Ribosomal 60s Subunit With 5e-45
2zkr_b 403 Structure Of A Mammalian Ribosomal 60s Subunit With 1e-18
3izr_C389 Localization Of The Large Subunit Ribosomal Protein 8e-81
3izr_C389 Localization Of The Large Subunit Ribosomal Protein 7e-39
3izr_C 389 Localization Of The Large Subunit Ribosomal Protein 3e-13
4a17_B391 T.Thermophila 60s Ribosomal Subunit In Complex With 2e-68
4a17_B391 T.Thermophila 60s Ribosomal Subunit In Complex With 2e-35
4a17_B 391 T.Thermophila 60s Ribosomal Subunit In Complex With 3e-12
1s1i_C386 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 1e-66
1s1i_C386 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 3e-39
1s1i_C386 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 2e-34
1s1i_C 386 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 6e-15
3o58_C387 Yeast 80s Ribosome. This Entry Consists Of The 60s 1e-66
3o58_C387 Yeast 80s Ribosome. This Entry Consists Of The 60s 3e-39
3o58_C387 Yeast 80s Ribosome. This Entry Consists Of The 60s 2e-34
3o58_C 387 Yeast 80s Ribosome. This Entry Consists Of The 60s 6e-15
3izs_C388 Localization Of The Large Subunit Ribosomal Protein 1e-66
3izs_C388 Localization Of The Large Subunit Ribosomal Protein 3e-39
3izs_C388 Localization Of The Large Subunit Ribosomal Protein 2e-34
3izs_C 388 Localization Of The Large Subunit Ribosomal Protein 7e-15
3jyw_C362 Structure Of The 60s Proteins For Eukaryotic Riboso 7e-65
3jyw_C362 Structure Of The 60s Proteins For Eukaryotic Riboso 3e-39
3jyw_C362 Structure Of The 60s Proteins For Eukaryotic Riboso 2e-34
3jyw_C 362 Structure Of The 60s Proteins For Eukaryotic Riboso 7e-15
3zf7_f429 High-resolution Cryo-electron Microscopy Structure 3e-62
3zf7_f429 High-resolution Cryo-electron Microscopy Structure 2e-34
3zf7_f 429 High-resolution Cryo-electron Microscopy Structure 7e-08
1ml5_e338 Crystal Structure Of The Ribosome At 5.5 A Resoluti 1e-21
1ml5_e338 Crystal Structure Of The Ribosome At 5.5 A Resoluti 2e-12
3j21_C365 Promiscuous Behavior Of Proteins In Archaeal Riboso 6e-21
3j21_C365 Promiscuous Behavior Of Proteins In Archaeal Riboso 6e-21
3j21_C 365 Promiscuous Behavior Of Proteins In Archaeal Riboso 6e-04
1s72_B338 Refined Crystal Structure Of The Haloarcula Marismo 1e-20
1s72_B338 Refined Crystal Structure Of The Haloarcula Marismo 2e-12
1jj2_B337 Fully Refined Crystal Structure Of The Haloarcula M 1e-20
1jj2_B337 Fully Refined Crystal Structure Of The Haloarcula M 2e-12
1ffk_B337 Crystal Structure Of The Large Ribosomal Subunit Fr 2e-20
1ffk_B337 Crystal Structure Of The Large Ribosomal Subunit Fr 2e-12
>pdb|2ZKR|BB Chain b, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 403 Back     alignment and structure 
Iteration: 1

 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/265 (66%), Positives = 205/265 (77%), Gaps = 36/265 (13%)
Query: 39  SHRKFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREAD 98
           SHRKFSAPRHGS+GF P+KRS+RHRGKVK FPKDD +KPVHLTAF+GYKAGMTHIVRE D
Sbjct: 2   SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 99  RPGSKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKN 158
           RPGSK+NKKE+VEAVTI+ETPPMVIVG++GYVETP GLR+FKT++AEH+S EC+RRFYKN
Sbjct: 62  RPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKN 121
Query: 159 WYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTXXXXXXXXXXXXXXT 218
           W+KS++KAFTK  KKWQD  GKK + +D   M KYC+VIRVIAHT               
Sbjct: 122 WHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHT--------------- 166
Query: 219 KDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 278
                                QM+LL  RQKKAHLME+Q+NGG+VA+K+ WAR+ LEQ +
Sbjct: 167 ---------------------QMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQV 205
Query: 279 PVGQVFAQDEMIDCIGVTKGKGFKG 303
           PV QVF QDEMID IGVTKGKG+KG
Sbjct: 206 PVSQVFGQDEMIDVIGVTKGKGYKG 230
>pdb|2ZKR|BB Chain b, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 403 Back     alignment and structure
>pdb|2ZKR|BB Chain b, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 403 Back     alignment and structure
>pdb|2ZKR|BB Chain b, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 403 Back     alignment and structure
>pdb|3IZR|C Chain C, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 389 Back     alignment and structure
>pdb|3IZR|C Chain C, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 389 Back     alignment and structure
>pdb|3IZR|C Chain C, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 389 Back     alignment and structure
>pdb|4A17|B Chain B, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 391 Back     alignment and structure
>pdb|4A17|B Chain B, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 391 Back     alignment and structure
>pdb|4A17|B Chain B, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 391 Back     alignment and structure
>pdb|1S1I|C Chain C, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 386 Back     alignment and structure
>pdb|1S1I|C Chain C, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 386 Back     alignment and structure
>pdb|1S1I|C Chain C, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 386 Back     alignment and structure
>pdb|1S1I|C Chain C, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 386 Back     alignment and structure
>pdb|3O58|C Chain C, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The First 80s In The Asymmetric Unit. Length = 387 Back     alignment and structure
>pdb|3O58|C Chain C, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The First 80s In The Asymmetric Unit. Length = 387 Back     alignment and structure
>pdb|3O58|C Chain C, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The First 80s In The Asymmetric Unit. Length = 387 Back     alignment and structure
>pdb|3O58|C Chain C, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The First 80s In The Asymmetric Unit. Length = 387 Back     alignment and structure
>pdb|3IZS|C Chain C, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 388 Back     alignment and structure
>pdb|3IZS|C Chain C, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 388 Back     alignment and structure
>pdb|3IZS|C Chain C, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 388 Back     alignment and structure
>pdb|3IZS|C Chain C, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 388 Back     alignment and structure
>pdb|3JYW|C Chain C, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 362 Back     alignment and structure
>pdb|3JYW|C Chain C, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 362 Back     alignment and structure
>pdb|3JYW|C Chain C, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 362 Back     alignment and structure
>pdb|3JYW|C Chain C, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 362 Back     alignment and structure
>pdb|3ZF7|FF Chain f, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 429 Back     alignment and structure
>pdb|3ZF7|FF Chain f, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 429 Back     alignment and structure
>pdb|3ZF7|FF Chain f, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 429 Back     alignment and structure
>pdb|1ML5|EE Chain e, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 338 Back     alignment and structure
>pdb|1ML5|EE Chain e, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 338 Back     alignment and structure
>pdb|3J21|C Chain C, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 365 Back     alignment and structure
>pdb|3J21|C Chain C, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 365 Back     alignment and structure
>pdb|3J21|C Chain C, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 365 Back     alignment and structure
>pdb|1S72|B Chain B, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 338 Back     alignment and structure
>pdb|1S72|B Chain B, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 338 Back     alignment and structure
>pdb|1JJ2|B Chain B, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 337 Back     alignment and structure
>pdb|1JJ2|B Chain B, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 337 Back     alignment and structure
>pdb|1FFK|B Chain B, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 337 Back     alignment and structure
>pdb|1FFK|B Chain B, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 337 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query630
3iz5_C389 60S ribosomal protein L3 (L3P); eukaryotic ribosom 1e-78
3iz5_C389 60S ribosomal protein L3 (L3P); eukaryotic ribosom 4e-37
3iz5_C389 60S ribosomal protein L3 (L3P); eukaryotic ribosom 9e-37
3iz5_C 389 60S ribosomal protein L3 (L3P); eukaryotic ribosom 6e-10
2zkr_b403 60S ribosomal protein L3; protein-RNA complex, 60S 1e-76
2zkr_b403 60S ribosomal protein L3; protein-RNA complex, 60S 4e-37
2zkr_b403 60S ribosomal protein L3; protein-RNA complex, 60S 2e-36
2zkr_b 403 60S ribosomal protein L3; protein-RNA complex, 60S 6e-10
3u5e_B387 60S ribosomal protein L3; translation, ribosome, r 5e-73
3u5e_B387 60S ribosomal protein L3; translation, ribosome, r 9e-36
3u5e_B387 60S ribosomal protein L3; translation, ribosome, r 1e-35
3u5e_B 387 60S ribosomal protein L3; translation, ribosome, r 3e-10
4a17_B391 RPL3, ribosomal protein L3; eukaryotic ribosome, r 2e-69
4a17_B391 RPL3, ribosomal protein L3; eukaryotic ribosome, r 9e-39
4a17_B391 RPL3, ribosomal protein L3; eukaryotic ribosome, r 2e-34
4a17_B 391 RPL3, ribosomal protein L3; eukaryotic ribosome, r 2e-07
1vq8_B338 50S ribosomal protein L3P; ribosome 50S, protein-p 1e-61
1vq8_B338 50S ribosomal protein L3P; ribosome 50S, protein-p 4e-36
1vq8_B338 50S ribosomal protein L3P; ribosome 50S, protein-p 3e-32
1vq8_B 338 50S ribosomal protein L3P; ribosome 50S, protein-p 2e-07
2ftc_C211 L3MT, MRP-L3, mitochondrial 39S ribosomal protein 9e-07
2zjr_B211 50S ribosomal protein L3; ribosome, large ribosoma 4e-05
3v2d_E206 50S ribosomal protein L3; ribosome associated inhi 4e-05
3r8s_D209 50S ribosomal protein L3; protein biosynthesis, RN 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
3bbo_F259 Ribosomal protein L3; large ribosomal subunit, spi 8e-05
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 403 Back     alignment and structure
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 403 Back     alignment and structure
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 403 Back     alignment and structure
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 403 Back     alignment and structure
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B 3izc_C 3izs_C 1s1i_C 3jyw_C Length = 387 Back     alignment and structure
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B 3izc_C 3izs_C 1s1i_C 3jyw_C Length = 387 Back     alignment and structure
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B 3izc_C 3izs_C 1s1i_C 3jyw_C Length = 387 Back     alignment and structure
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B 3izc_C 3izs_C 1s1i_C 3jyw_C Length = 387 Back     alignment and structure
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_B 4a1c_B 4a1e_B Length = 391 Back     alignment and structure
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_B 4a1c_B 4a1e_B Length = 391 Back     alignment and structure
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_B 4a1c_B 4a1e_B Length = 391 Back     alignment and structure
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_B 4a1c_B 4a1e_B Length = 391 Back     alignment and structure
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ... Length = 338 Back     alignment and structure
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ... Length = 338 Back     alignment and structure
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ... Length = 338 Back     alignment and structure
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ... Length = 338 Back     alignment and structure
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 211 Back     alignment and structure
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B* 1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B 3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B 1vor_E 1vou_E 1vow_E 1voy_E ... Length = 211 Back     alignment and structure
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E 2wrj_E 2wrl_E 2wro_E 2wrr_E ... Length = 206 Back     alignment and structure
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B 1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D ... Length = 209 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 259 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query630
3iz5_C389 60S ribosomal protein L3 (L3P); eukaryotic ribosom 100.0
3u5e_B387 60S ribosomal protein L3; translation, ribosome, r 100.0
4a17_B391 RPL3, ribosomal protein L3; eukaryotic ribosome, r 100.0
2zkr_b403 60S ribosomal protein L3; protein-RNA complex, 60S 100.0
3j21_C365 50S ribosomal protein L3P; archaea, archaeal, KINK 100.0
1vq8_B338 50S ribosomal protein L3P; ribosome 50S, protein-p 100.0
2ftc_C211 L3MT, MRP-L3, mitochondrial 39S ribosomal protein 100.0
3r8s_D209 50S ribosomal protein L3; protein biosynthesis, RN 100.0
3v2d_E206 50S ribosomal protein L3; ribosome associated inhi 100.0
3iz5_C389 60S ribosomal protein L3 (L3P); eukaryotic ribosom 100.0
2zjr_B211 50S ribosomal protein L3; ribosome, large ribosoma 100.0
3bbo_F259 Ribosomal protein L3; large ribosomal subunit, spi 100.0
3u5e_B387 60S ribosomal protein L3; translation, ribosome, r 100.0
4a17_B391 RPL3, ribosomal protein L3; eukaryotic ribosome, r 100.0
2zkr_b403 60S ribosomal protein L3; protein-RNA complex, 60S 100.0
3j21_C365 50S ribosomal protein L3P; archaea, archaeal, KINK 100.0
2zjr_B211 50S ribosomal protein L3; ribosome, large ribosoma 100.0
3bbo_F259 Ribosomal protein L3; large ribosomal subunit, spi 100.0
2ftc_C211 L3MT, MRP-L3, mitochondrial 39S ribosomal protein 100.0
3r8s_D209 50S ribosomal protein L3; protein biosynthesis, RN 99.97
1vq8_B338 50S ribosomal protein L3P; ribosome 50S, protein-p 99.97
3v2d_E206 50S ribosomal protein L3; ribosome associated inhi 99.97
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B 4b6a_B 3izc_C 3izs_C 1s1i_C 3jyw_C Back     alignment and structure
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_B 4a1c_B 4a1e_B Back     alignment and structure
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3j21_C 50S ribosomal protein L3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ... Back     alignment and structure
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Back     alignment and structure
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B 1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D ... Back     alignment and structure
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E 2wrj_E 2wrl_E 2wro_E 2wrr_E ... Back     alignment and structure
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B* 1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B 3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B 1vor_E 1vou_E 1vow_E 1voy_E ... Back     alignment and structure
>3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B 4b6a_B 3izc_C 3izs_C 1s1i_C 3jyw_C Back     alignment and structure
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_B 4a1c_B 4a1e_B Back     alignment and structure
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3j21_C 50S ribosomal protein L3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B* 1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B 3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B 1vor_E 1vou_E 1vow_E 1voy_E ... Back     alignment and structure
>3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Back     alignment and structure
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B 1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D ... Back     alignment and structure
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ... Back     alignment and structure
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E 2wrj_E 2wrl_E 2wro_E 2wrr_E ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 630
d1vqob1337 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon 2e-53
d1vqob1337 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon 4e-21
d1vqob1337 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon 4e-20
d1vqob1 337 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon 6e-06
d2gycb1209 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherich 8e-16
d2gycb1209 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherich 1e-07
d2gycb1209 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherich 1e-05
d2j01e1205 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus t 2e-13
d2j01e1205 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus t 2e-05
d2j01e1205 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus t 3e-04
d2zjrb1205 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococc 9e-12
d2zjrb1205 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococc 2e-05
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 337 Back     information, alignment and structure

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Ribosomal protein L3
domain: Ribosomal protein L3
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  184 bits (467), Expect = 2e-53
 Identities = 76/280 (27%), Positives = 108/280 (38%), Gaps = 54/280 (19%)

Query: 42  KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPG 101
           + S PR GS+GF P+KRS     +   +P DD      +  F GYKAGMTH+V   D P 
Sbjct: 2   QPSRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQP--GVQGFAGYKAGMTHVVLVNDEPN 59

Query: 102 SKINKKEIVEAVTILETPPMVIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYK 161
           S     E    VT++ETPPM  V +  Y +TP+G R    VW +    E  R        
Sbjct: 60  SPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDH 119

Query: 162 SRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIAHTQNQQQSLHQNQQSHTKDQ 221
               A  +                     A     +R+I HT                  
Sbjct: 120 DPDAAEEQIRDA---------------HEAGDLGDLRLITHTVPD--------------- 149

Query: 222 PIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP--IP 279
                                +    +KK  +ME ++ GGSV+D++  A   +E      
Sbjct: 150 --------------------AVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHA 189

Query: 280 VGQVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAH 319
           +  +F   E  D  GVTKGKG +G +    + K++ K A 
Sbjct: 190 MNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHAR 229
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 337 Back     information, alignment and structure
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 337 Back     information, alignment and structure
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 337 Back     information, alignment and structure
>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli [TaxId: 562]} Length = 209 Back     information, alignment and structure
>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli [TaxId: 562]} Length = 209 Back     information, alignment and structure
>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli [TaxId: 562]} Length = 209 Back     information, alignment and structure
>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus thermophilus [TaxId: 274]} Length = 205 Back     information, alignment and structure
>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus thermophilus [TaxId: 274]} Length = 205 Back     information, alignment and structure
>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus thermophilus [TaxId: 274]} Length = 205 Back     information, alignment and structure
>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus radiodurans [TaxId: 1299]} Length = 205 Back     information, alignment and structure
>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus radiodurans [TaxId: 1299]} Length = 205 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query630
d1vqob1337 Ribosomal protein L3 {Archaeon Haloarcula marismor 100.0
d2zjrb1205 Ribosomal protein L3 {Deinococcus radiodurans [Tax 100.0
d2j01e1205 Ribosomal protein L3 {Thermus thermophilus [TaxId: 100.0
d2gycb1209 Ribosomal protein L3 {Escherichia coli [TaxId: 562 100.0
d2gycb1209 Ribosomal protein L3 {Escherichia coli [TaxId: 562 99.97
d1vqob1337 Ribosomal protein L3 {Archaeon Haloarcula marismor 99.97
d2zjrb1205 Ribosomal protein L3 {Deinococcus radiodurans [Tax 99.97
d2j01e1205 Ribosomal protein L3 {Thermus thermophilus [TaxId: 99.95
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Ribosomal protein L3
domain: Ribosomal protein L3
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=3.9e-87  Score=691.24  Aligned_cols=331  Identities=35%  Similarity=0.581  Sum_probs=298.5

Q ss_pred             CCCCCCccCccccccccccccCCcccccccCCCCCCcEEeeeeeeeccCeEEEEeecCCCCCCCCceEEEEEEeeecCcE
Q psy16472         42 KFSAPRHGSMGFYPKKRSARHRGKVKCFPKDDPTKPVHLTAFIGYKAGMTHIVREADRPGSKINKKEIVEAVTILETPPM  121 (630)
Q Consensus        42 k~s~Prhgslgf~prkrs~~~~~~v~~~pk~~~~~p~~l~~f~GyKagmthiv~~~~r~~s~~~~ke~~~~vTi~e~pp~  121 (630)
                      |+|+||||||||+|||||++++++|++||+++. .| +++||+|||+|||||+++++||+|+++++|++.||||||+|||
T Consensus         2 k~~~PR~GSl~f~PRkRa~~~~~rv~s~p~~~~-~~-~~~G~iG~KvGMT~v~~~d~~~~S~~~gk~i~vPVTVIe~~p~   79 (337)
T d1vqob1           2 QPSRPRKGSLGFGPRKRSTSETPRFNSWPSDDG-QP-GVQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPM   79 (337)
T ss_dssp             CCCCCCSSCSSSCSCCCCSCSSCCCSCCCCSCS-SC-EECCEEEEEEEEEEEEEECCCTTSTTTTSEEEEEEEEEECCCE
T ss_pred             CCCCCCcccCCcCccccccccCCCcccCcccCC-Cc-ceEEEEEEccCceEEEEeCCCcCCcccCceeEeeeEEEEcCCc
Confidence            679999999999999999999999999999975 45 9999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEEeeCCCCcchhhhhhccccChHHHhhhhhhhhhhHHHHhHHhhhhhhhhhhhHHHHHHHHHhhccceEEEEEE
Q psy16472        122 VIVGVIGYVETPHGLRSFKTVWAEHLSQECRRRFYKNWYKSRQKAFTKASKKWQDKLGKKTIAQDLRKMAKYCKVIRVIA  201 (630)
Q Consensus       122 ~vvg~~~y~~~~~gl~~~~~~~a~~~~~~~~r~~~k~~~k~~~ka~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ir~i~  201 (630)
                      +|+++..|..+++++..+.++|++++++++.|++++.|....+++++.+.              .+.+ .+.+..||+|+
T Consensus        80 ~V~~vkt~e~dgy~a~qlg~~~~~~~~~~~~r~~~~~~~~~~k~~~~~~k--------------~~~~-~~~~~~vrvi~  144 (337)
T d1vqob1          80 RAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDHDPDAAEEQIR--------------DAHE-AGDLGDLRLIT  144 (337)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSCCCTTGGGTSCCCSSCCHHHHHHHHH--------------HHHH-HTCEEEEEEEE
T ss_pred             eEEEEEEEecCCCceEEEEEEEccccchhhhcccchhhccchhhcchhhh--------------hhhh-hcccceEEEEe
Confidence            99999999999999999999999999999999998877655555543221              1222 24678999999


Q ss_pred             eecchhhccccccccCCCCcccccccCCCCCCCchhhHHHHHhhhhhhhceEeEEEecCCchhhHHHHHHHhhcCccccc
Q psy16472        202 HTQNQQQSLHQNQQSHTKDQPIQSNVNKTQPDSHESHVQMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG  281 (630)
Q Consensus       202 ~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~qKkah~me~q~ngG~i~~Kv~wa~~~lEkqvPV~  281 (630)
                      ||||                                    .+++                                    
T Consensus       145 ~tqp------------------------------------~~~~------------------------------------  152 (337)
T d1vqob1         145 HTVP------------------------------------DAVP------------------------------------  152 (337)
T ss_dssp             ECCG------------------------------------GGCT------------------------------------
T ss_pred             eecc------------------------------------cccc------------------------------------
Confidence            9996                                    2333                                    


Q ss_pred             eeeccceeeEEeeeecccccchhhhhhhhhhcccCCceEEEEEeCCCChhhhhHHhhhcC--CceecccccccCCcEEEE
Q psy16472        282 QVFAQDEMIDCIGVTKGKGFKGEMIAMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHL--EQPIPVGQVFAQDEMIDC  359 (630)
Q Consensus       282 ~Vf~qde~idvigvtKgkGy~g~m~g~kllg~~~KK~~i~Eiqv~gg~~~~~~e~A~~lL--GKkIgmtqVF~~Ge~VDV  359 (630)
                                                    ++++||+||+||+|+|++++++++||.+.+  |++|.+.++|++||+|||
T Consensus       153 ------------------------------~~~~KKp~v~E~~v~Gg~~~e~~~~~~~~~~~G~ei~v~dvF~~G~~VDV  202 (337)
T d1vqob1         153 ------------------------------SVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADV  202 (337)
T ss_dssp             ------------------------------TSCCCSCCEEEEEEESSCHHHHHHHHHHHHHHTCEECGGGTCCTTCEEEE
T ss_pred             ------------------------------ccccccchheeeeccCCchhhhhhhhhhhhccccEEEeeheecCCCEEEE
Confidence                                          578999999999999999999999998876  999999999999999999


Q ss_pred             EEEeeccceeeeEEeeccCCCCCcCcC---CcccccccCCCCCcceEEeEeecCcCCCeeeeEEeceEEEeeeeeecCCC
Q psy16472        360 IGVTKGKGFKGVTSRWHTKKLPRKTHK---GLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELNKKIYRMGAGIHTKDG  436 (630)
Q Consensus       360 TgVTKGKGYqGVqkRwG~kk~p~Kthk---GhRk~GsIG~~~P~RVlkEvRmaGQmGy~~GTEiNvdIFKIG~~vdvgkG  436 (630)
                      +|+|||+||||||+||||+++| ++|+   .||++||||+|+|+||+++++|||||||+.+|++|++|++|++.      
T Consensus       203 ~g~TKGKGFqGvvKR~gf~~~p-~sHg~~~~hR~~GsiG~~~PgRV~kg~kmaGqmG~~~rT~~Nl~IvkI~~~------  275 (337)
T d1vqob1         203 AGVTKGKGTQGPVKRWGVQKRK-GKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEG------  275 (337)
T ss_dssp             EEECCCCCEECHHHHHCCCCCC-GGGGSSSCSSCCSCSCCSSSSSCCTTSCCCEECSCCEEEEEEEEEEEEEEE------
T ss_pred             EEEecccccccceEeeeecccc-cccCCCccccCCcccCCCCCCceecccccCCccCCccEEEeCcEEEEEccc------
Confidence            9999999999999999999998 6665   58999999999999999999999999999999999999999851      


Q ss_pred             ceeeeeccccCCCCCCCCCCCCCCCccCCCCCCCcccCCCCCCcCCCeEEEEEeeccccchhhhhcCCCccccccceEEE
Q psy16472        437 KVSVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTELFLCKKKYLSMVIKNNASTDYDLTEKSI  516 (630)
Q Consensus       437 f~Gv~KR~~f~~~p~shg~~hR~~GsiG~~~P~rV~~g~km~G~mG~~~~T~~~~~~~~~~~~~~~n~~~t~~~L~~~~I  516 (630)
                                                                                                   .+|
T Consensus       276 -----------------------------------------------------------------------------~~i  278 (337)
T d1vqob1         276 -----------------------------------------------------------------------------DEP  278 (337)
T ss_dssp             -----------------------------------------------------------------------------STT
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         148


Q ss_pred             ecCCCCCcccccCCcEEEEecccccCcCcEEEEEechhhhhhhhhcccCCceEEEEEcccccc
Q psy16472        517 TPMGGFPHYGEVNNDFLMIKGCCMGPKKRVITLRKMKLLKKRQKKAHLMEIQLNGGSVADKIA  579 (630)
Q Consensus       517 ~p~ggf~~yg~V~~n~i~vKGsVpG~k~~~v~ir~~il~~~R~kk~~l~eiqLk~IstsSK~G  579 (630)
                      ||+|||+|||++++||||||||||||++++|+||+++++.    +....+++|+||||+||||
T Consensus       279 ~~~gGf~~ygdve~~~ilVKGsVPG~~~~~V~ir~aik~~----~~~~~~~~i~~is~~Sk~g  337 (337)
T d1vqob1         279 TVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAVRPN----DQPRLDPEVRYVSNESNQG  337 (337)
T ss_dssp             CCTTCBTTTBCCCEEEEEEESCCSSCTTCEEEEEECSSCS----SCCCCSCCEEEECCCCSCC
T ss_pred             cccCCceeeeeccCCEEEEEecccCCCCcEEEEeccccCC----CCccCCCcceEEeccCcCC
Confidence            9999999999999999999999999999999999999655    3456689999999999997
>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure