Psyllid ID: psy16692
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1149 | 2.2.26 [Sep-21-2011] | |||||||
| Q5GLZ8 | 1057 | Probable E3 ubiquitin-pro | yes | N/A | 0.296 | 0.322 | 0.320 | 7e-43 | |
| Q6PAV2 | 1057 | Probable E3 ubiquitin-pro | yes | N/A | 0.295 | 0.320 | 0.306 | 2e-42 | |
| Q5PQN1 | 1057 | Probable E3 ubiquitin-pro | yes | N/A | 0.295 | 0.320 | 0.309 | 5e-42 | |
| Q15034 | 1050 | Probable E3 ubiquitin-pro | no | N/A | 0.298 | 0.326 | 0.308 | 2e-41 | |
| F2Z461 | 1003 | E3 ISG15--protein ligase | no | N/A | 0.173 | 0.198 | 0.305 | 2e-27 | |
| Q8IVU3 | 1022 | Probable E3 ubiquitin-pro | no | N/A | 0.275 | 0.309 | 0.272 | 4e-25 | |
| Q9UII4 | 1024 | E3 ISG15--protein ligase | no | N/A | 0.243 | 0.273 | 0.275 | 2e-24 | |
| Q15751 | 4861 | Probable E3 ubiquitin-pro | no | N/A | 0.170 | 0.040 | 0.319 | 2e-20 | |
| Q6P798 | 551 | RCC1 and BTB domain-conta | no | N/A | 0.152 | 0.317 | 0.316 | 3e-19 | |
| Q99LJ7 | 551 | RCC1 and BTB domain-conta | no | N/A | 0.164 | 0.343 | 0.306 | 7e-19 |
| >sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 | Back alignment and function desciption |
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Score = 176 bits (447), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 131/409 (32%), Positives = 190/409 (46%), Gaps = 68/409 (16%)
Query: 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCL 62
G H+LALND G+V+ WG D+ GQLGL ++ + +P+ +K L+ + +VQ GY
Sbjct: 92 GEAHTLALNDKGQVYAWGLDSDGQLGLVGSE-ECIRVPRNIKSLSDIQIVQVACGY---- 146
Query: 63 VLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACA 122
+HSLAL+ EVF WG + +GQLGL D K Q+ P+ +K L + +Q A
Sbjct: 147 --------YHSLALSKASEVFCWGQNKYGQLGL-GTDCKKQTSPQLLKSLLGIPFMQVAA 197
Query: 123 GYSHCLVLTSSGVV----------------TCTHKENGCGSDPSQGVQSNLVQDSHTTIT 166
G +H VLT SG + + N S SQ + + HT
Sbjct: 198 GGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHT--A 255
Query: 167 SLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVS 226
+L G ++T+G YGQ+G +NS + P++V L+ + IACG H+ S
Sbjct: 256 ALTKEGGVFTFGAGGYGQLG-HNSTSHEINPRKVFELMGSIVTEIACGRQHTSAFVPSSG 314
Query: 227 RLYAFGIGSAVQLDS-PKSVHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSG 285
R+Y+FG+G QL + S K+P + G W DS VK+I+SG
Sbjct: 315 RIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWYPYNGQCLPDIDS----EEYFCVKRIFSG 370
Query: 286 GDHSIVTVTKSSDGVLSDDFRVLNPATQILDVNFERLKECEREVEQLKSDETLDQDLLLY 345
GD S + + DDFR NP QI VN E L Q L Y
Sbjct: 371 GDQSFSHYSSPQNCGPPDDFRCPNPTKQIWTVN-----------------EALIQKWLSY 413
Query: 346 ------------LETVFLSPGCMNGSFLQVENDEHFSCNSKKFSFIKLS 382
++ F S GC+NGSFL V ND+H+ + +FS + ++
Sbjct: 414 PSGRFPVEIANEIDGTFSSSGCLNGSFLAVSNDDHYRTGT-RFSGVDMN 461
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Probable E3 ubiquitin-protein ligase involved in either protein trafficking or in the distribution of cellular structures. Required for spermatozoon maturation and fertility, and for the removal of the cytoplasmic droplet of the spermatozoon. E3 ubiquitin-protein ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer it to targeted substrates. Homo sapiens (taxid: 9606) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 | Back alignment and function description |
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| >sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8IVU3|HERC6_HUMAN Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9UII4|HERC5_HUMAN E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6P798|RCBT2_RAT RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q99LJ7|RCBT2_MOUSE RCC1 and BTB domain-containing protein 2 OS=Mus musculus GN=Rcbtb2 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1149 | ||||||
| 340729980 | 1104 | PREDICTED: probable E3 ubiquitin-protein | 0.219 | 0.228 | 0.466 | 2e-62 | |
| 328784403 | 1081 | PREDICTED: probable E3 ubiquitin-protein | 0.210 | 0.223 | 0.452 | 1e-60 | |
| 345494372 | 1083 | PREDICTED: probable E3 ubiquitin-protein | 0.208 | 0.220 | 0.464 | 2e-60 | |
| 380018521 | 1081 | PREDICTED: probable E3 ubiquitin-protein | 0.210 | 0.223 | 0.455 | 2e-60 | |
| 350396381 | 1088 | PREDICTED: probable E3 ubiquitin-protein | 0.208 | 0.220 | 0.455 | 2e-59 | |
| 321474724 | 1052 | hypothetical protein DAPPUDRAFT_98215 [D | 0.217 | 0.237 | 0.415 | 3e-59 | |
| 242008674 | 1044 | hect E3 ubiquitin ligase, putative [Pedi | 0.207 | 0.227 | 0.447 | 1e-57 | |
| 270002050 | 1042 | hypothetical protein TcasGA2_TC000997 [T | 0.214 | 0.236 | 0.436 | 8e-55 | |
| 157111251 | 1057 | hect E3 ubiquitin ligase [Aedes aegypti] | 0.221 | 0.240 | 0.401 | 1e-52 | |
| 307178981 | 1048 | Probable E3 ubiquitin-protein ligase HER | 0.205 | 0.225 | 0.434 | 2e-52 |
| >gi|340729980|ref|XP_003403270.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Bombus terrestris] | Back alignment and taxonomy information |
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Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 140/300 (46%), Positives = 180/300 (60%), Gaps = 48/300 (16%)
Query: 797 ILDYREPDLEDVFGITFRNWYLLMSDDYFERLILIFKQCLIYLLQQPGVVDSTNGDITFN 856
IL+ R LE V +NW+L YFERL+ + K +++ ++Q + N I ++
Sbjct: 589 ILESRPEVLEIV-----KNWWLEAPSHYFERLVRVHKSVVLHYVKQ----SNPNKGILWD 639
Query: 857 RKLSFCLQVLQKLNSLNNETLTSSISAGGRTVSNIRTPAPHGGRKVAYTAFYMPDLATVC 916
L L L L+ LNNE G KV Y+ F++P+L +
Sbjct: 640 ATLQDILDSLGLLHKLNNED--------------------SEGNKVPYSTFHLPELVELI 679
Query: 917 DIRIDYFRWISGRPNGSTRDFLCNYPFIFDAKAKTTLLEMDQRIQMEHAMNQTNFY---- 972
DIR DY +WIS R + S R C+YPF+ DA AK LLE DQ IQM+ AMN+
Sbjct: 680 DIRADYIKWISERESFSHRKVFCHYPFLLDANAKIILLETDQAIQMQSAMNEAATRAVMN 739
Query: 973 -LFLQTF--NPHTLNQYLEVEVSRDNIVEDTIRELAQYTTNDFKKPLKVNDTSPIYLAPQ 1029
+FL F +P NQ++ + VSR+NIV DT+RELAQY ++D KKPL+V
Sbjct: 740 QIFLDPFSVDPRHHNQFVILNVSRENIVADTLRELAQYNSSDLKKPLRV----------- 788
Query: 1030 VKFRGEEAEDAGGVRREFLMLLLKEILDPKYGMFKEYEETRSIWFSEDTFEDQNMYFLIG 1089
KF GEEAEDAGGVR+EF MLLL+EILDPKYGMFK+YEETR IWFSED+FED+NMYFLIG
Sbjct: 789 -KFHGEEAEDAGGVRKEFFMLLLREILDPKYGMFKQYEETRVIWFSEDSFEDENMYFLIG 847
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Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328784403|ref|XP_395217.4| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|345494372|ref|XP_001602409.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Nasonia vitripennis] | Back alignment and taxonomy information |
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| >gi|380018521|ref|XP_003693176.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Apis florea] | Back alignment and taxonomy information |
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| >gi|350396381|ref|XP_003484535.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|321474724|gb|EFX85688.1| hypothetical protein DAPPUDRAFT_98215 [Daphnia pulex] | Back alignment and taxonomy information |
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| >gi|242008674|ref|XP_002425127.1| hect E3 ubiquitin ligase, putative [Pediculus humanus corporis] gi|212508801|gb|EEB12389.1| hect E3 ubiquitin ligase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
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| >gi|270002050|gb|EEZ98497.1| hypothetical protein TcasGA2_TC000997 [Tribolium castaneum] | Back alignment and taxonomy information |
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| >gi|157111251|ref|XP_001651453.1| hect E3 ubiquitin ligase [Aedes aegypti] gi|108878447|gb|EAT42672.1| AAEL005820-PA [Aedes aegypti] | Back alignment and taxonomy information |
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| >gi|307178981|gb|EFN67497.1| Probable E3 ubiquitin-protein ligase HERC4 [Camponotus floridanus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1149 | ||||||
| FB|FBgn0035207 | 1058 | CG9153 [Drosophila melanogaste | 0.298 | 0.324 | 0.365 | 7.8e-111 | |
| MGI|MGI:1914595 | 1057 | Herc4 "hect domain and RLD 4" | 0.304 | 0.331 | 0.312 | 9.6e-86 | |
| RGD|1310971 | 1057 | Herc4 "HECT and RLD domain con | 0.304 | 0.331 | 0.314 | 3.6e-85 | |
| UNIPROTKB|F1NCH3 | 1048 | HERC4 "Uncharacterized protein | 0.302 | 0.332 | 0.315 | 1.8e-84 | |
| UNIPROTKB|F1NBC5 | 1050 | HERC3 "Uncharacterized protein | 0.297 | 0.325 | 0.320 | 3.7e-83 | |
| UNIPROTKB|E1C514 | 1050 | HERC3 "Uncharacterized protein | 0.297 | 0.325 | 0.320 | 3.7e-83 | |
| UNIPROTKB|F1RW66 | 1050 | HERC3 "Uncharacterized protein | 0.298 | 0.326 | 0.310 | 7.5e-82 | |
| UNIPROTKB|E2RMB0 | 1050 | HERC3 "Uncharacterized protein | 0.298 | 0.326 | 0.310 | 7.6e-82 | |
| UNIPROTKB|A2VDP7 | 1050 | HERC3 "HERC3 protein" [Bos tau | 0.298 | 0.326 | 0.310 | 2.1e-81 | |
| UNIPROTKB|Q15034 | 1050 | HERC3 "Probable E3 ubiquitin-p | 0.298 | 0.326 | 0.310 | 5.8e-81 |
| FB|FBgn0035207 CG9153 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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Score = 524 (189.5 bits), Expect = 7.8e-111, Sum P(4) = 7.8e-111
Identities = 143/391 (36%), Positives = 210/391 (53%)
Query: 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCL 62
G HSLAL+D G+V +WG + GQLG + DK+ +PK V+ L + +VVQ G +H L
Sbjct: 98 GSRHSLALSDWGQVLSWGDNDCGQLG-HATDKEIVQLPKVVRQLVTKTVVQIACGNNHSL 156
Query: 63 VLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQ-SIPKRVKGLASVSVVQAC 121
LTS CGE+++WG + +GQLG+ S + + + P R+ L + +
Sbjct: 157 ALTS------------CGELYSWGSNIYGQLGVNSPNDLTHCNYPLRLTTLLGIPLAAIA 204
Query: 122 AGYSHCLVLTSSGVVTCTHKENGCG----------SDPSQ-------GVQSNLVQDSHTT 164
G +H +++ SG V + N CG S P+Q GV+ D +
Sbjct: 205 CGGNHSFLISKSGAVFGWGRNN-CGQLGLNDETNRSYPTQLKTLRTLGVRFVACGDEFSV 263
Query: 165 ITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKS 224
L + G ++T G YGQ+G S+ + P+ V L+ I +ACG H+ L S
Sbjct: 264 F--LTNEGGVFTCGAGAYGQLGHGFSSNEML-PRMVMELMGSTITQVACGNRHTLALVPS 320
Query: 225 VSRLYAFGIGSAVQLD--SPKSVHKTPQLIHGPWIA-SPVAMTAGEDSLVSHSGGLVVKK 281
R+YAFG+GS+ QL S KS+ PQ++ GPW++ S A+ DS VS LV+++
Sbjct: 321 RGRVYAFGLGSSGQLGTRSTKSL-MLPQVVIGPWVSPSGSALLQSNDSQVS----LVIRQ 375
Query: 282 IYSGGDHSIVTVTKSSDGVLSDDFRVLNPATQILDVNFERLKECEREVEQLKSDETLDQD 341
I+SGGD SIVT T D V +DFR NP +QIL + E K+C + + L+SD D
Sbjct: 376 IFSGGDQSIVTTTLFVDKVPPEDFRNYNPKSQILTLTAEVTKQCAQCKQGLQSD----MD 431
Query: 342 LLLYLETVFLSPGCMNGSFLQVENDEHFSCN 372
LL +E +F S C NGSFL +++D HF C+
Sbjct: 432 LLSSIELIFRSQACWNGSFL-LDHDRHFGCS 461
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| MGI|MGI:1914595 Herc4 "hect domain and RLD 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|1310971 Herc4 "HECT and RLD domain containing E3 ubiquitin protein ligase 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NCH3 HERC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NBC5 HERC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C514 HERC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RW66 HERC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RMB0 HERC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A2VDP7 HERC3 "HERC3 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q15034 HERC3 "Probable E3 ubiquitin-protein ligase HERC3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1149 | |||
| cd00078 | 352 | cd00078, HECTc, HECT domain; C-terminal catalytic | 3e-21 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 7e-18 | |
| pfam00632 | 298 | pfam00632, HECT, HECT-domain (ubiquitin-transferas | 3e-17 | |
| cd00078 | 352 | cd00078, HECTc, HECT domain; C-terminal catalytic | 2e-16 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 4e-16 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 6e-15 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 2e-13 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 2e-13 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 8e-13 | |
| smart00119 | 328 | smart00119, HECTc, Domain Homologous to E6-AP Carb | 4e-11 | |
| smart00119 | 328 | smart00119, HECTc, Domain Homologous to E6-AP Carb | 2e-10 | |
| COG5021 | 872 | COG5021, HUL4, Ubiquitin-protein ligase [Posttrans | 2e-10 | |
| COG5021 | 872 | COG5021, HUL4, Ubiquitin-protein ligase [Posttrans | 6e-10 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 4e-05 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 4e-04 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 4e-04 |
| >gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 3e-21
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 51/154 (33%)
Query: 987 LEVEVSRDNIVEDTIRELAQYTTNDFKKPLKVNDTSPIYLAPQVKFRGEEAEDAGGVRRE 1046
L++ V RD I+ED +R+L++ +++D KK L+V +F GEE DAGGV RE
Sbjct: 1 LKITVRRDRILEDALRQLSKVSSSDLKKVLEV------------EFVGEEGIDAGGVTRE 48
Query: 1047 FLMLLLKEILDPKYGMFKEYEETRS-IWFSEDTFEDQNMYFLIGKEYVPCTYISKYSMFK 1105
F L+ KE+ +P YG+F+ + ++ + +F D
Sbjct: 49 FFTLVSKELFNPSYGLFRYTPDDSGLLYPNPSSFAD------------------------ 84
Query: 1106 EYEETRSIWFSEDTFEDQNMYFLIGTLCGLAIYN 1139
+ ++ +G L G A+Y
Sbjct: 85 --------------EDHLKLFRFLGRLLGKALYE 104
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It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352 |
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
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| >gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase) | Back alignment and domain information |
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| >gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) | Back alignment and domain information |
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| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
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| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
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| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
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| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
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| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
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| >gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with | Back alignment and domain information |
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| >gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with | Back alignment and domain information |
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| >gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
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| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
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| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1149 | |||
| KOG0941|consensus | 850 | 100.0 | ||
| KOG0941|consensus | 850 | 100.0 | ||
| COG5184 | 476 | ATS1 Alpha-tubulin suppressor and related RCC1 dom | 100.0 | |
| COG5184 | 476 | ATS1 Alpha-tubulin suppressor and related RCC1 dom | 100.0 | |
| KOG1427|consensus | 443 | 99.97 | ||
| KOG1427|consensus | 443 | 99.96 | ||
| KOG0942|consensus | 1001 | 99.93 | ||
| COG5021 | 872 | HUL4 Ubiquitin-protein ligase [Posttranslational m | 99.92 | |
| KOG0942|consensus | 1001 | 99.87 | ||
| KOG4427|consensus | 1096 | 99.87 | ||
| KOG0783|consensus | 1267 | 99.84 | ||
| COG5021 | 872 | HUL4 Ubiquitin-protein ligase [Posttranslational m | 99.83 | |
| cd00078 | 352 | HECTc HECT domain; C-terminal catalytic domain of | 99.83 | |
| KOG0939|consensus | 720 | 99.81 | ||
| KOG4427|consensus | 1096 | 99.79 | ||
| KOG0783|consensus | 1267 | 99.78 | ||
| KOG1428|consensus | 3738 | 99.78 | ||
| KOG0939|consensus | 720 | 99.77 | ||
| cd00078 | 352 | HECTc HECT domain; C-terminal catalytic domain of | 99.73 | |
| KOG1428|consensus | 3738 | 99.67 | ||
| smart00119 | 336 | HECTc Domain Homologous to E6-AP Carboxyl Terminus | 99.64 | |
| KOG0940|consensus | 358 | 99.59 | ||
| KOG0170|consensus | 621 | 99.52 | ||
| smart00119 | 336 | HECTc Domain Homologous to E6-AP Carboxyl Terminus | 99.51 | |
| PF00632 | 317 | HECT: HECT-domain (ubiquitin-transferase); InterPr | 99.34 | |
| KOG0940|consensus | 358 | 99.25 | ||
| KOG0170|consensus | 621 | 99.12 | ||
| PF00415 | 51 | RCC1: Regulator of chromosome condensation (RCC1) | 98.95 | |
| PF00415 | 51 | RCC1: Regulator of chromosome condensation (RCC1) | 98.92 | |
| PF13540 | 30 | RCC1_2: Regulator of chromosome condensation (RCC1 | 98.59 | |
| PF13540 | 30 | RCC1_2: Regulator of chromosome condensation (RCC1 | 98.46 | |
| PF00632 | 317 | HECT: HECT-domain (ubiquitin-transferase); InterPr | 97.65 | |
| KOG0943|consensus | 3015 | 95.31 | ||
| KOG0315|consensus | 311 | 83.97 | ||
| KOG0943|consensus | 3015 | 83.9 |
| >KOG0941|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-76 Score=693.94 Aligned_cols=604 Identities=30% Similarity=0.509 Sum_probs=501.6
Q ss_pred cceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEE
Q psy16692 39 IPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVV 118 (1149)
Q Consensus 39 ~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~ 118 (1149)
.|..+..+...++.|++||. +|+++++..|++|+||.|.+||+|.+. ...+.. |..++++.|.+..
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn------------~hclal~~~g~~~~wg~~~~g~~~~~~-~~~~~~-p~~~~sl~g~p~a 69 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGN------------NHCLALSCAGELFVWGMNNNGQLGRAL-YFPDAK-PEPVESLKGVPLA 69 (850)
T ss_pred hhHHHHHHhhhhhhhhcccc------------HHHHhhhccCCeeeccCCccchhhhhc-cCCCCC-CccchhhcCCcHH
Confidence 45556666667899999999 999999999999999999999999994 444445 9999999999999
Q ss_pred EEEeCCCeeEEEecCceEEEecCCCCCCCCCCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccE
Q psy16692 119 QACAGYSHCLVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQ 198 (1149)
Q Consensus 119 ~Ia~G~~hs~aLT~~G~Vy~wG~n~qlG~~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~ 198 (1149)
+|+||.+|+++++. |+++ +|.+|.++++|++..||+||+...+.. .|.
T Consensus 70 ~v~~g~~hs~~lS~-----------------------------~~~~--lt~e~~~fs~Ga~~~~q~~h~~~~~~~-~~~ 117 (850)
T KOG0941|consen 70 QVSAGEAHSFALSS-----------------------------HTVL--LTDEGKVFSFGAGSTGQLGHSLTENEV-LPL 117 (850)
T ss_pred HHhcCCCcchhhhh-----------------------------chhh--cchhccccccCCccccccccccccccc-ccH
Confidence 99999999999762 8888 999999999999999999997666666 899
Q ss_pred EecccCCCCEEEEEecCCeEEEEEecCCcEEEEecCCCCCCCCCCC-CcccceEecCCCcCCccccccCccccccccCCc
Q psy16692 199 RVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQLDSPKS-VHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGL 277 (1149)
Q Consensus 199 ~V~~l~~~~V~~Ia~G~~hs~alt~~~G~Vy~wG~N~~GQLG~g~~-~~~~P~~V~~p~~~~~~~~~~~~~~~~~~~~~~ 277 (1149)
.+..+.+..+++|+||..||++....-|++|.+|.+..| .+.- ....+. .+.......+.
T Consensus 118 ~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG---k~~i~s~s~~~----------------~l~~~d~~~~~ 178 (850)
T KOG0941|consen 118 LVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG---KGVIVSLSGED----------------LLRDHDSEKDH 178 (850)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC---Cceeeccchhh----------------hcccccHHHHH
Confidence 998889999999999999999988888999999998887 0000 000000 00011122345
Q ss_pred ceEEEeecCCeEEEEEecCCCCCCCcccccccccCcccccCH-HHHHHHHHHhhhccccccccHHHHHHHHhhcCchhhh
Q psy16692 278 VVKKIYSGGDHSIVTVTKSSDGVLSDDFRVLNPATQILDVNF-ERLKECEREVEQLKSDETLDQDLLLYLETVFLSPGCM 356 (1149)
Q Consensus 278 ~V~~IaaG~~hS~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~l~~~~~~~~~~~~~~~~~~~l~~~l~~vfSS~acl 356 (1149)
.+..+++|+++++.+........++++++..++...+.++.. .++..|... .......++++.++.+|||++|.
T Consensus 179 ~~~~~~~g~dq~~~l~~~~~~~~~~~d~~n~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~l~~~~~llss~a~~ 253 (850)
T KOG0941|consen 179 RCSLAFAGGDQTFSLSSKGENSQGDNDLSNLNPSDHYVDLIAERRVALLLKK-----LEKGDNTAILNAIELLLSSLACD 253 (850)
T ss_pred HHHHHhcCCCceEEEEeecccccccchhhhcCCcccceechhhhhHHHHHhh-----cccchHHHHHHHHHHHhhhHhhc
Confidence 567789999999999999999999999999988888877763 445555442 12345567788888899999999
Q ss_pred cccccccccccccccCCccchhhhhhHHHHHHhhhcccccccccccCCCccCCCCCCccchhhhhhcCCCCCCCCccccc
Q psy16692 357 NGSFLQVENDEHFSCNSKKFSFIKLSLINWFMKLHFSIFGQGFGCVCPTVLGDCVPKSWLYLETVFLSPGCMNGSFLQVE 436 (1149)
Q Consensus 357 n~~~~~~~~~~h~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~ 436 (1149)
|++|+ ...
T Consensus 254 ~~s~l------------------------------------------------------------------------~k~ 261 (850)
T KOG0941|consen 254 NTSFL------------------------------------------------------------------------DKS 261 (850)
T ss_pred cchhh------------------------------------------------------------------------hhh
Confidence 88444 333
Q ss_pred CCcccccCCCCCCCchhhhHHHhhHHHhhhhhhHHHHHH-HHHHHhhhhcccccccCCCchHHHHHHHHhchhhhcccCc
Q psy16692 437 NDEHFSCNSKNPGVDMQLCQDCYDTIARIERESVRSLVS-NLAILASHAHLVKSLWNTPPDAEALRMFLTLPLYHEFMNP 515 (1149)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~l~~-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 515 (1149)
.+.++.|....+++|++.++..|..++......+.+.+. ++ ...+++.|...++++|.+++++.||+++.+...
T Consensus 262 ~~~~~~c~~~~~~ld~~~~~~~f~~l~~~~~~~~~~~l~~~~-----~~~L~~~~s~~~~d~e~~~i~l~l~~~~~~~~s 336 (850)
T KOG0941|consen 262 RDCNVFCSFQIHGLDLNLARPAFLELTLPLFCKILSELLVAI-----QKRLIRLWSKYPADQEALYILLLLPLIPLNVLS 336 (850)
T ss_pred hccccccceecccccHHHHHHHHHHHhhhhHHHHHHHHHHHH-----HHHHHhhhhhCCcHHHHHHHHHHcccchHHHHH
Confidence 344555666677899999999999999866666666554 55 578888899899999999999999999887776
Q ss_pred cceeEEEecccccCccceeeccccccccccCccchhhHHHHHHHHhhhhhhhhcccceeeeeeeeccccccccccccCCC
Q psy16692 516 RQHEILHMPFAGALPAFWIVVFGSLIGICGLGHLDFYRELLLSISNFCDRLFLVGNSVLLVLCVLMFYPLSHIHRFRTPG 595 (1149)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~n~~~~~~l~~~~fy~~~~~~~~~~~~ 595 (1149)
..+.++.+|++++++
T Consensus 337 ~~~~s~~vp~~~~i~----------------------------------------------------------------- 351 (850)
T KOG0941|consen 337 NEYNSLNVPFADAIC----------------------------------------------------------------- 351 (850)
T ss_pred HHHHhccCcHHHHHH-----------------------------------------------------------------
Confidence 555555555553322
Q ss_pred CeeeccCCCCeEEeeccCcccCccccccccccccccccchhhhhhhhhhcccCCcCCceEEEEEeCCCchhHhHhhhhcc
Q psy16692 596 PIVLMHGTLPLVIYCDQYFFPCPSCYTLALMEPRSTLTGTLKRASVIVCGLTGLVLSQFYVLQRDRTFELVGITVLLLVV 675 (1149)
Q Consensus 596 ~~~~~~~~~~~f~~C~~~~f~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~VrR~~~l~~ds~~~l~l 675 (1149)
T Consensus 352 -------------------------------------------------------------------------------- 351 (850)
T KOG0941|consen 352 -------------------------------------------------------------------------------- 351 (850)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEehhhHHHHHHhhcCCCCCcCCCCCCccccCCCccccccceeecCCCeEEcCCCcccchhhHHHHHHHHHHhh
Q psy16692 676 PYPLRMLATSLASLILFTAMRNSSVDVFPDFPIVAAYPKNGINHYGITEYEETRSIWFSEDTFEDQNMCFLIGTLCGLAI 755 (1149)
Q Consensus 676 ~~~l~v~~~~e~~~~l~~~~~~~~~~~f~~f~ge~~~d~gG~~~yglf~~~~~~~~~~~~~s~~~~~~f~~iG~l~glAl 755 (1149)
T Consensus 352 -------------------------------------------------------------------------------- 351 (850)
T KOG0941|consen 352 -------------------------------------------------------------------------------- 351 (850)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCceeccCCcHHHHHHHhCCCCCccchhhhCHHHHHHHHHHHhCCCCCchhhhcceehhhhhccCchhhHHHHhhhccE
Q psy16692 756 YNYTIINMPFPLALYKKILDEPILLQDLKDLSPTLAKSLQDILDYREPDLEDVFGITFRNWYLLMSDDYFERLILIFKQC 835 (1149)
Q Consensus 756 y~~~~ld~~F~~~fykkLLg~~~~l~DL~~ldp~l~~sL~~ll~~~~~dv~~~~~ltF~~wws~l~~~~F~rLV~~~k~~ 835 (1149)
.+.++ .++.-..||+.+.+++|.+++.+|+.+
T Consensus 352 ----------------------------------------~~~~~--------~~~~l~~~~~~~~~k~~~~~v~~f~~~ 383 (850)
T KOG0941|consen 352 ----------------------------------------IVAEN--------KRLKLVEYWNQLSPKYFRKLVSMFKEA 383 (850)
T ss_pred ----------------------------------------Hhhcc--------hHHHHHHHHHHhchhhcchhhhchhhH
Confidence 00000 222346799999999999999999999
Q ss_pred EEEEecCCCcccCCCCccccchhHHHHHHHHHHHHHhhccccccccccCCccccccCCCCCCCCCCCCCCcccccccccc
Q psy16692 836 LIYLLQQPGVVDSTNGDITFNRKLSFCLQVLQKLNSLNNETLTSSISAGGRTVSNIRTPAPHGGRKVAYTAFYMPDLATV 915 (1149)
Q Consensus 836 I~~~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fy~~~l~~~ 915 (1149)
|..+++..+..... ++.+.+++.+|++||++|.+. +.||+++||++++++.
T Consensus 384 V~~~l~~~~~~~~e------~~~i~~~l~~~~lly~vN~~~-----------------------~lip~e~FY~~~l~~~ 434 (850)
T KOG0941|consen 384 VTEILKFSKELAEE------NKGIRSALKLLELLYKVNCRK-----------------------GLIPYEEFYNEELNDR 434 (850)
T ss_pred HHHhhhccchhhhh------ccchhhHHHHHHHHHHHhccC-----------------------CCCCHHHhhhHHHHhH
Confidence 99999887666543 789999999999999999665 6799999999999999
Q ss_pred cchHHHHHHHhcCCCCCCcceeecccCeeeehhhHHHHhhHHHHHHHHHHhhhhhhhhhhhhcCCCCCCCceEEEEccCc
Q psy16692 916 CDIRIDYFRWISGRPNGSTRDFLCNYPFIFDAKAKTTLLEMDQRIQMEHAMNQTNFYLFLQTFNPHTLNQYLEVEVSRDN 995 (1149)
Q Consensus 916 ~~~~~d~~~w~~~~~~~~~~~~~~~~PF~~~~~~K~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~R~~ 995 (1149)
+|+++||..|+....+ .|+||+|||||+..+|++++++|++++|+.+++++++.......+ ...+||+.|+|||++
T Consensus 435 id~~~dy~~w~~~~~~---~fsfc~ypFIL~~~aK~~lL~yD~rlrM~~~~~~a~~~s~~~~~~-~~~~p~l~l~VrR~~ 510 (850)
T KOG0941|consen 435 IDMKEDYVHWRTKQMN---CFSFCNYPFILNAVAKIELLQYDARLRMESERRKAFLSSLFQGLQ-LLVSPYLKLTVRRDH 510 (850)
T ss_pred HHHHHHHHHHHHHhcc---cceeecCCeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCcEEEEEehhh
Confidence 9999999999987642 799999999999999999999999999999999999987666555 337899999999999
Q ss_pred hHHHHHHHHhcCCcccccCceEEecCCCcccCCcccccCccccCCCchHHHHHHHHHHHhcCCCCCceEEccCCceeecC
Q psy16692 996 IVEDTIRELAQYTTNDFKKPLKVNDTSPIYLAPQVKFRGEEAEDAGGVRREFLMLLLKEILDPKYGMFKEYEETRSIWFS 1075 (1149)
Q Consensus 996 i~~d~~~~~~~~~~~~l~~~l~v~~~~~~~~~~~~~f~~E~g~d~GG~~~Eff~ll~~e~~~p~~g~f~~~~~~~~~~~~ 1075 (1149)
|++||+++|+..+..||||+|+| +|.||+|+|+|||+||||+||++|+|+|+||||+++|+++.+||+
T Consensus 511 lv~Dsl~~l~~~~~~Dl~K~L~V------------~F~gE~g~DaGGv~kEfF~ll~~ei~~p~~GmF~~~e~s~~~WF~ 578 (850)
T KOG0941|consen 511 LVEDALRQLSMISMSDLKKQLKV------------EFVGEEGVDAGGVRKEFFQLLVEEIFNPEYGMFTYDEESSLLWFN 578 (850)
T ss_pred hHHHHHHHHHhhhhhhhhcceEE------------EECCCcccccCchHHHHHHHHHHHHcCccccCeecccccceeeec
Confidence 99999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhhhhhccccccccccccccccchhhhhhcccccccCCccccchhhhhhHHHHHHHhcCcc---cCCCCC
Q psy16692 1076 EDTFEDQNMYFLIGKEYVPCTYISKYSMFKEYEETRSIWFSEDTFEDQNMYFLIGTLCGLAIYNYTV---RFPART 1148 (1149)
Q Consensus 1076 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~g~aiy~~~~---~fP~a~ 1148 (1149)
+ .+++..++|+++|++||+||||.++ |||+|+
T Consensus 579 ~-----------------------------------------~~~~~~~~y~liGil~GLAIyN~~ildlpFPlAl 613 (850)
T KOG0941|consen 579 P-----------------------------------------SPFEEEKQYHLIGILCGLAIYNNTILDLPFPLAL 613 (850)
T ss_pred C-----------------------------------------CCCCccceeeehhHHHHHHHhccceecCCCcHHH
Confidence 9 4566677999999999999999999 999885
|
|
| >KOG0941|consensus | Back alignment and domain information |
|---|
| >COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1427|consensus | Back alignment and domain information |
|---|
| >KOG1427|consensus | Back alignment and domain information |
|---|
| >KOG0942|consensus | Back alignment and domain information |
|---|
| >COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0942|consensus | Back alignment and domain information |
|---|
| >KOG4427|consensus | Back alignment and domain information |
|---|
| >KOG0783|consensus | Back alignment and domain information |
|---|
| >COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) | Back alignment and domain information |
|---|
| >KOG0939|consensus | Back alignment and domain information |
|---|
| >KOG4427|consensus | Back alignment and domain information |
|---|
| >KOG0783|consensus | Back alignment and domain information |
|---|
| >KOG1428|consensus | Back alignment and domain information |
|---|
| >KOG0939|consensus | Back alignment and domain information |
|---|
| >cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) | Back alignment and domain information |
|---|
| >KOG1428|consensus | Back alignment and domain information |
|---|
| >smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with | Back alignment and domain information |
|---|
| >KOG0940|consensus | Back alignment and domain information |
|---|
| >KOG0170|consensus | Back alignment and domain information |
|---|
| >smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with | Back alignment and domain information |
|---|
| >PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] | Back alignment and domain information |
|---|
| >KOG0940|consensus | Back alignment and domain information |
|---|
| >KOG0170|consensus | Back alignment and domain information |
|---|
| >PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) | Back alignment and domain information |
|---|
| >PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) | Back alignment and domain information |
|---|
| >PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B | Back alignment and domain information |
|---|
| >PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B | Back alignment and domain information |
|---|
| >PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] | Back alignment and domain information |
|---|
| >KOG0943|consensus | Back alignment and domain information |
|---|
| >KOG0315|consensus | Back alignment and domain information |
|---|
| >KOG0943|consensus | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1149 | ||||
| 4dnu_A | 372 | Crystal Structure Of The W285a Mutant Of Uvb-Resist | 2e-18 | ||
| 4dnv_A | 370 | Crystal Structure Of The W285f Mutant Of Uvb-Resist | 3e-16 | ||
| 4dnw_A | 374 | Crystal Structure Of Uvb-Resistance Protein Uvr8 Le | 4e-16 | ||
| 4d9s_A | 406 | Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv | 6e-16 | ||
| 3kci_A | 389 | The Third Rld Domain Of Herc2 Length = 389 | 1e-15 | ||
| 1c4z_A | 358 | Structure Of E6ap: Insights Into Ubiquitination Pat | 3e-12 | ||
| 1c4z_A | 358 | Structure Of E6ap: Insights Into Ubiquitination Pat | 8e-12 | ||
| 3of7_A | 473 | The Crystal Structure Of Prp20p From Saccharomyces | 3e-11 | ||
| 1zvd_A | 380 | Regulation Of Smurf2 Ubiquitin Ligase Activity By A | 1e-07 | ||
| 1a12_A | 413 | Regulator Of Chromosome Condensation (Rcc1) Of Huma | 2e-07 | ||
| 1i2m_B | 402 | Ran-Rcc1-So4 Complex Length = 402 | 2e-07 | ||
| 3h1d_A | 405 | Structure Of The Huwe1 Hect Domain Length = 405 | 6e-07 | ||
| 3g1n_A | 388 | Catalytic Domain Of The Human E3 Ubiquitin-Protein | 7e-07 | ||
| 3olm_A | 429 | Structure And Function Of A Ubiquitin Binding Site | 2e-06 | ||
| 1jtd_B | 273 | Crystal Structure Of Beta-Lactamase Inhibitor Prote | 4e-06 | ||
| 3qhy_B | 282 | Structural, Thermodynamic And Kinetic Analysis Of T | 4e-06 | ||
| 3mvd_K | 423 | Crystal Structure Of The Chromatin Factor Rcc1 In C | 3e-05 | ||
| 1nd7_A | 374 | Conformational Flexibility Underlies Ubiquitin Liga | 5e-05 | ||
| 3tug_A | 398 | Crystal Structure Of The Hect Domain Of Itch E3 Ubi | 2e-04 | ||
| 2xbb_A | 386 | Nedd4 Hect:ub Complex Length = 386 | 3e-04 | ||
| 3jw0_C | 385 | E2~ubiquitin-Hect Length = 385 | 5e-04 | ||
| 3jvz_C | 385 | E2~ubiquitin-Hect Length = 385 | 5e-04 |
| >pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 | Back alignment and structure |
|
| >pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 | Back alignment and structure |
| >pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 | Back alignment and structure |
| >pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 | Back alignment and structure |
| >pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 | Back alignment and structure |
| >pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 358 | Back alignment and structure |
| >pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 358 | Back alignment and structure |
| >pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 | Back alignment and structure |
| >pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The E2 To The Hect Domain Length = 380 | Back alignment and structure |
| >pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 | Back alignment and structure |
| >pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 | Back alignment and structure |
| >pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain Length = 405 | Back alignment and structure |
| >pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase Huwe1 Length = 388 | Back alignment and structure |
| >pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 429 | Back alignment and structure |
| >pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii In Complex With Tem-1 Beta-Lactamase Length = 273 | Back alignment and structure |
| >pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The Picomolar Binding Affinity Interaction Of The Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With Class A Beta-Lactamases Length = 282 | Back alignment and structure |
| >pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 | Back alignment and structure |
| >pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation Mediated By The Wwp1 Hect Domain E3 Ligase Length = 374 | Back alignment and structure |
| >pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin Ligase Length = 398 | Back alignment and structure |
| >pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex Length = 386 | Back alignment and structure |
| >pdb|3JW0|C Chain C, E2~ubiquitin-Hect Length = 385 | Back alignment and structure |
| >pdb|3JVZ|C Chain C, E2~ubiquitin-Hect Length = 385 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 6e-57
Identities = 65/291 (22%), Positives = 109/291 (37%), Gaps = 76/291 (26%)
Query: 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQ-ACAGYSHC 61
G HS + G+++TWG +G+LG +D + Q PK V+ L VV AC
Sbjct: 167 GGAHSACVTAAGDLYTWGKGRYGRLGH--SDSEDQLKPKLVEALQGHRVVDIACGS---- 220
Query: 62 LVLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQAC 121
G +L L D V++WG +G+LG +P ++ L + VV+
Sbjct: 221 -------GDAQTLCLTDDDTVWSWGDGDYGKLGR--GGSDGCKVPMKIDSLTGLGVVKVE 271
Query: 122 AGYSHCLVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNE 181
G + LT S G +YTWG +
Sbjct: 272 CGSQFSVALTKS--------------------------------------GAVYTWGKGD 293
Query: 182 YGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQL-D 240
Y ++G + S+ V +P++V+ L + IA G+ H ++ +Y +G QL D
Sbjct: 294 YHRLG-HGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTED-GEVYTWGDNDEGQLGD 351
Query: 241 SPKSVHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIV 291
+ + P+L+ G V ++ G H++
Sbjct: 352 GTTNAIQRPRLVAAL-------------------QGKKVNRVACGSAHTLA 383
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 | Back alignment and structure |
|---|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 | Back alignment and structure |
|---|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 | Back alignment and structure |
|---|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 | Back alignment and structure |
|---|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 | Back alignment and structure |
|---|
| >1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 | Back alignment and structure |
|---|
| >3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 | Back alignment and structure |
|---|
| >3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 | Back alignment and structure |
|---|
| >1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 | Back alignment and structure |
|---|
| >1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 | Back alignment and structure |
|---|
| >2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 | Back alignment and structure |
|---|
| >2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 | Back alignment and structure |
|---|
| >1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 | Back alignment and structure |
|---|
| >1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 | Back alignment and structure |
|---|
| >3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 | Back alignment and structure |
|---|
| >3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1149 | |||
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 100.0 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 100.0 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 100.0 | |
| 3mvd_K | 423 | Regulator of chromosome condensation; protein-DNA | 100.0 | |
| 1a12_A | 413 | RCC1, regulator of chromosome condensation 1; guan | 100.0 | |
| 3of7_A | 473 | Regulator of chromosome condensation; beta-propell | 100.0 | |
| 1a12_A | 413 | RCC1, regulator of chromosome condensation 1; guan | 100.0 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 100.0 | |
| 3mvd_K | 423 | Regulator of chromosome condensation; protein-DNA | 100.0 | |
| 3of7_A | 473 | Regulator of chromosome condensation; beta-propell | 100.0 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 100.0 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 100.0 | |
| 1c4z_A | 358 | E6AP, ubiquitin-protein ligase E3A; bilobal struct | 99.94 | |
| 3h1d_A | 405 | E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, | 99.92 | |
| 3olm_A | 429 | E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S | 99.92 | |
| 1zvd_A | 380 | SMAD ubiquitination regulatory factor 2; ubiquitin | 99.91 | |
| 1nd7_A | 374 | WW domain-containing protein 1; HECT, ubiquitin, l | 99.91 | |
| 2oni_A | 392 | E3 ubiquitin-protein ligase NEDD4-like protein; al | 99.9 | |
| 3h1d_A | 405 | E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, | 99.89 | |
| 1c4z_A | 358 | E6AP, ubiquitin-protein ligase E3A; bilobal struct | 99.87 | |
| 2oni_A | 392 | E3 ubiquitin-protein ligase NEDD4-like protein; al | 99.86 | |
| 3olm_A | 429 | E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S | 99.86 | |
| 1nd7_A | 374 | WW domain-containing protein 1; HECT, ubiquitin, l | 99.86 | |
| 1zvd_A | 380 | SMAD ubiquitination regulatory factor 2; ubiquitin | 99.85 | |
| 4gbf_A | 400 | Phikz131; 7-bladed beta-propeller, possibly partic | 94.73 | |
| 4gbf_A | 400 | Phikz131; 7-bladed beta-propeller, possibly partic | 89.86 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 82.37 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 80.79 |
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=449.97 Aligned_cols=286 Identities=24% Similarity=0.382 Sum_probs=260.9
Q ss_pred CCCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCccccccc--------------
Q psy16692 1 MTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTS-------------- 66 (1149)
Q Consensus 1 AcG~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~-------------- 66 (1149)
|||..|++||+++|+||+||.|.+||||.+... ....|..+..+.+.+|++|+||..|+++++.
T Consensus 22 a~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~--~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~G 99 (406)
T 4d9s_A 22 SAGASHSVALLSGDIVCSWGRGEDGQLGHGDAE--DRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 99 (406)
T ss_dssp EECSSEEEEEETTTEEEEEECCTTSTTCSSSCC--CEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGG
T ss_pred ecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcc--cCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCc
Confidence 699999999999999999999999999999864 5678999999998899999999999998864
Q ss_pred ---------------------------ccCccEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEE
Q psy16692 67 ---------------------------TTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQ 119 (1149)
Q Consensus 67 ---------------------------S~G~~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~ 119 (1149)
+||..|+++|+++|+||+||.|.+||||.+. ......|+.+..+.+.+|++
T Consensus 100 qLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~--~~~~~~p~~v~~~~~~~i~~ 177 (406)
T 4d9s_A 100 RLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGD--TEDSLVPQKIQAFEGIRIKM 177 (406)
T ss_dssp TTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS--CCCEEEEEECGGGTTCCEEE
T ss_pred CCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCC--CCCcccceEecccCCCcEEE
Confidence 4799999999999999999999999999997 45667899999999999999
Q ss_pred EEeCCCeeEEEecCceEEEecCCC--CCCCC--------------CCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCC
Q psy16692 120 ACAGYSHCLVLTSSGVVTCTHKEN--GCGSD--------------PSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYG 183 (1149)
Q Consensus 120 Ia~G~~hs~aLT~~G~Vy~wG~n~--qlG~~--------------~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~G 183 (1149)
|+||..|+++|+++|+||+||.|. |+|.+ ...+|++|+||..|+++ ++++|+||+||.|.+|
T Consensus 178 va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~--l~~~G~v~~wG~n~~G 255 (406)
T 4d9s_A 178 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTIS--VSYSGALYTYGWSKYG 255 (406)
T ss_dssp EEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEE--EETTCCEEEEECCTTS
T ss_pred EecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEE--EcCCCCEEEeeCCCCC
Confidence 999999999999999999999998 88875 34689999999999999 9999999999999999
Q ss_pred CcccCCCCCcccccEEecccCCCCEEEEEecCCeEEEEEecCCcEEEEecCCCCCCCCCCC-CcccceEecCCCcCCccc
Q psy16692 184 QMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQLDSPKS-VHKTPQLIHGPWIASPVA 262 (1149)
Q Consensus 184 QLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~alt~~~G~Vy~wG~N~~GQLG~g~~-~~~~P~~V~~p~~~~~~~ 262 (1149)
|||+++..... .|+++..+.+.+|++|+||.+|++|++++ |+||+||.|.+||||.+.. +...|++|..+.
T Consensus 256 qlG~g~~~~~~-~p~~v~~~~~~~v~~i~~G~~hs~alt~~-G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~------ 327 (406)
T 4d9s_A 256 QLGHGDLEDHL-IPHKLEALSNSFISQISGGWRHTMALTSD-GKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD------ 327 (406)
T ss_dssp TTCSSSCCCEE-EEEECGGGTTSCEEEEEECSSEEEEEETT-SCEEEEECCTTSTTCSSSSSCEEEEEEECCGG------
T ss_pred CCCCCCCcCcc-ccEEecccCCCCEEEEEecCCEEEEEcCC-CeEEEeeCCCCCCCCCCCCCCCccCEEEeccC------
Confidence 99999877666 89999999888999999999999999998 9999999999999999998 888888887432
Q ss_pred cccCccccccccCCcceEEEeecCCeEEEEEecCCC-CCCCcccccccccCc
Q psy16692 263 MTAGEDSLVSHSGGLVVKKIYSGGDHSIVTVTKSSD-GVLSDDFRVLNPATQ 313 (1149)
Q Consensus 263 ~~~~~~~~~~~~~~~~V~~IaaG~~hS~~l~~~~~~-~~~~~~~~~~~~~~~ 313 (1149)
..+|.+|+||.+|+++++.++.. .|+.+++++++....
T Consensus 328 -------------~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~ 366 (406)
T 4d9s_A 328 -------------DQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGES 366 (406)
T ss_dssp -------------GCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC
T ss_pred -------------CCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCC
Confidence 23589999999999999999887 999999999987654
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B | Back alignment and structure |
|---|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
| >1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A | Back alignment and structure |
|---|
| >3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A | Back alignment and structure |
|---|
| >3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A | Back alignment and structure |
|---|
| >2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A | Back alignment and structure |
|---|
| >3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A | Back alignment and structure |
|---|
| >1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A | Back alignment and structure |
|---|
| >2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A | Back alignment and structure |
|---|
| >3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A | Back alignment and structure |
|---|
| >1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} | Back alignment and structure |
|---|
| >4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} | Back alignment and structure |
|---|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1149 | ||||
| d1nd7a_ | 374 | d.148.1.1 (A:) WW domain-containing protein 1, WWP | 3e-22 | |
| d1nd7a_ | 374 | d.148.1.1 (A:) WW domain-containing protein 1, WWP | 7e-09 | |
| d1c4za_ | 350 | d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) | 5e-22 | |
| d1c4za_ | 350 | d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) | 6e-10 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 3e-19 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 9e-18 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 3e-13 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 5e-13 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 1e-07 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 1e-06 |
| >d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Hect, E3 ligase catalytic domain superfamily: Hect, E3 ligase catalytic domain family: Hect, E3 ligase catalytic domain domain: WW domain-containing protein 1, WWP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.9 bits (243), Expect = 3e-22
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 19/134 (14%)
Query: 961 QMEHAMNQTNFYLFLQTFNPHTLNQYLEVEVSRDNIVEDTIRELAQYTTNDFKKPLKVND 1020
M +F Q+ + L ++++ VSR + ED+ +++ D ++ L V
Sbjct: 1 HMGFRWKLAHFRYLCQS---NALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYV-- 55
Query: 1021 TSPIYLAPQVKFRGEEAEDAGGVRREFLMLLLKEILDPKYGMFKEYEETRSIWF----SE 1076
FRGEE D GG+ RE+ LL E+L+P Y +F+ + S
Sbjct: 56 ----------IFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPAST 105
Query: 1077 DTFEDQNMYFLIGK 1090
+ + + IG+
Sbjct: 106 INPDHLSYFCFIGR 119
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| >d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 | Back information, alignment and structure |
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| >d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 | Back information, alignment and structure |
|---|
| >d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
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| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
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| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
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| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
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| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
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| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
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Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1149 | |||
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 100.0 | |
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 100.0 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 99.96 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 99.94 | |
| d1c4za_ | 350 | Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s | 99.84 | |
| d1nd7a_ | 374 | WW domain-containing protein 1, WWP1 {Human (Homo | 99.83 | |
| d1nd7a_ | 374 | WW domain-containing protein 1, WWP1 {Human (Homo | 99.81 | |
| d1c4za_ | 350 | Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s | 99.79 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 94.7 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 92.67 |
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.1e-40 Score=378.86 Aligned_cols=274 Identities=27% Similarity=0.429 Sum_probs=231.3
Q ss_pred CCCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCccccccc--------------
Q psy16692 1 MTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTS-------------- 66 (1149)
Q Consensus 1 AcG~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~-------------- 66 (1149)
|||..|++||+++|+||+||.|.+||||.+.........|. ......+|++|+||..|+++++.
T Consensus 53 a~G~~h~~al~~~G~vy~wG~n~~GQLG~g~~~~~~~~~~~--~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~ 130 (401)
T d1a12a_ 53 EAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPG--KVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNN 130 (401)
T ss_dssp EECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCE--ECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETT
T ss_pred EeCCCEEEEEeCCCEEEEEeCCCCCCCCccccccccccccc--ccccccceeeecccccceeeccccccceecccccccc
Confidence 68999999999999999999999999999986433444444 44556689999999999998777
Q ss_pred ---------------------------ccCccEEEEEeeCCcEEEEECCCCCCCCCCCCCCc---------ccccceEec
Q psy16692 67 ---------------------------TTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKK---------SQSIPKRVK 110 (1149)
Q Consensus 67 ---------------------------S~G~~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~---------~~~~P~~V~ 110 (1149)
++|..|+++++.+|++|+||.|.+||||.+..... ....|..+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~ 210 (401)
T d1a12a_ 131 GVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVM 210 (401)
T ss_dssp EEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECC
T ss_pred ccccccCCccccceeeeeccCCceeEEEecccceeeeecCCcccccccCCccccCCCCccccccCCccccccccccceee
Confidence 35789999999999999999999999997652111 122344443
Q ss_pred -----cCCCCcEEEEEeCCCeeEEEecCceEEEecCCC--CCCCC----------------CCCCeEEEEecCCeeEEEE
Q psy16692 111 -----GLASVSVVQACAGYSHCLVLTSSGVVTCTHKEN--GCGSD----------------PSQGVQSNLVQDSHTTITS 167 (1149)
Q Consensus 111 -----~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~--qlG~~----------------~~~~V~~Is~G~~hs~a~~ 167 (1149)
.....+|.+|+||..|+++|+++|++|+||.+. ++|.. ....++.+++|..|+++
T Consensus 211 ~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~-- 288 (401)
T d1a12a_ 211 LKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVC-- 288 (401)
T ss_dssp CBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEE--
T ss_pred ccccCCCCCceEEEEEecCCeEEEEecCCeEeeecccceecccccccccceeccccccccccceeEEEEeeeccceee--
Confidence 234568999999999999999999999999988 66653 34669999999999999
Q ss_pred eCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEecCCeEEEEEecCCcEEEEecCCCCCCCCCCC-Cc
Q psy16692 168 LNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQLDSPKS-VH 246 (1149)
Q Consensus 168 Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~alt~~~G~Vy~wG~N~~GQLG~g~~-~~ 246 (1149)
++++|+||+||.|.+||||.++.......|+.++.+. +|++|+||.+|++|++++ |+||+||.|.+||||.|.+ +.
T Consensus 289 l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i~~~~--~i~~Is~G~~hs~alt~d-G~v~~WG~n~~GQLG~G~~~~~ 365 (401)
T d1a12a_ 289 MDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKD-GRVFAWGMGTNYQLGTGQDEDA 365 (401)
T ss_dssp EETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEEEETT-SCEEEEECCTTSTTCSSSCSCE
T ss_pred eccCCCEEEecccccCccCCCcccccccCCEEcCCCC--CeEEEEeeCCEEEEEeCC-CeEEEEecCCCCCCCCCCCCCE
Confidence 9999999999999999999998777766899988653 599999999999999999 9999999999999999998 88
Q ss_pred ccceEecCCCcCCccccccCccccccccCCcceEEEeecCCeEEEEEecCCC
Q psy16692 247 KTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIVTVTKSSD 298 (1149)
Q Consensus 247 ~~P~~V~~p~~~~~~~~~~~~~~~~~~~~~~~V~~IaaG~~hS~~l~~~~~~ 298 (1149)
..|++|..+. ..+.+|.+|+||++||++++.+++.
T Consensus 366 ~~P~~v~~~~-----------------~~~~~v~~v~~G~~hs~~l~~d~~~ 400 (401)
T d1a12a_ 366 WSPVEMMGKQ-----------------LENRVVLSVSSGGQHTVLLVKDKEQ 400 (401)
T ss_dssp EEEEECCSTT-----------------TTTEEEEEEEECSSEEEEEEEECSC
T ss_pred ecCEEeeccC-----------------CCCCEEEEEEEccceEEEEEECCcc
Confidence 8888886422 2456799999999999999998864
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
| >d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|