Psyllid ID: psy1670

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERKVS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKakkgfmtpeRKKKLRLLLRKKAAEELKKEQERKVS
Flexible Loop (DISEMBL)
maddaakkakqaeidrkraevrKRMEeaskakkakkgfmtperkkkLRLLLRKKAAeelkkeqerkvs
Low Complexity Region (SEG)
MaddaakkakqaEIDRKRAEVRKRMEEASkakkakkGFMTPerkkklrlllrkkaaeelkkeqerkVS
Disordered region (IsUnstruct)
********************************************************************
Disordered Region (DISOPRED)
*********************************************KLRLLL*****************
Disordered Region (DISEMBL)
*************************************FMTPERKKKLRLLLRKKAAE***********
Disordered Region (DISPRO)
************************************GFMTPERKKKLRLLLRKKAAEELKKEQE****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKKAKKGFMTPERKKxxxxxxxxxxxxxxxxxxxxxVS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	68	2.2.26 [Sep-21-2011]
P36188	269	Troponin I OS=Drosophila	no	N/A	0.926	0.234	0.952	1e-12
O44572	194	Troponin I 4 OS=Caenorhab	yes	N/A	0.926	0.324	0.671	3e-12
Q20334	250	Troponin I 1 OS=Caenorhab	no	N/A	0.911	0.248	0.630	3e-10
Q9XUN9	260	Troponin I 3 OS=Caenorhab	no	N/A	0.867	0.226	0.672	2e-09
Q9GYF1	242	Troponin I 2 OS=Caenorhab	no	N/A	0.882	0.247	0.661	4e-09
P05547	201	Troponin I OS=Pontastacus	N/A	N/A	0.838	0.283	0.827	5e-09

>sp|P36188|TNNI_DROME Troponin I OS=Drosophila melanogaster GN=wupA PE=2 SV=3

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 6   AKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQER 65
           AKKAKQAEI+RKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQER
Sbjct: 67  AKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQER 126

Query: 66  KVS 68
           K +
Sbjct: 127 KAA 129

Troponin I is the ATPase inhibitory subunit of troponin in the thin filament regulatory complex. Involved in the development and maintenance of muscle and nervous system. May also be involved in the cytoskeletal apparatus.
Drosophila melanogaster (taxid: 7227)

>sp|O44572|TNNI4_CAEEL Troponin I 4 OS=Caenorhabditis elegans GN=tni-4 PE=2 SV=2

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)

Query: 1  MAD-DAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEEL 59
          M+D DA +  K AE +RK+ EVRKR+EEAS+ KKAKKGF+TPERKKKLR LL  KAAE+L
Sbjct: 1  MSDVDADEARKMAERERKKEEVRKRLEEASRMKKAKKGFLTPERKKKLRKLLMMKAAEDL 60

Query: 60 KKEQ 63
          K++Q
Sbjct: 61 KQQQ 64

Troponin I is the inhibitory subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to muscle actomyosin ATPase activity.

Caenorhabditis elegans (taxid: 6239)

>sp|Q20334|TNNI1_CAEEL Troponin I 1 OS=Caenorhabditis elegans GN=tni-1 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 51/65 (78%), Gaps = 3/65 (4%)

Query: 2  ADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKK 61
           +DA +KA++ E   K+AEVRKR+EEA + KK KKGF+TPERKKKLR LL  KAAE+LK 
Sbjct: 19 GEDAQRKAQEREA--KKAEVRKRLEEAGQ-KKQKKGFLTPERKKKLRKLLMNKAAEDLKT 75

Query: 62 EQERK 66
          +Q RK
Sbjct: 76 QQLRK 80

Troponin I is the inhibitory subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to muscle actomyosin ATPase activity.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9XUN9|TNNI3_CAEEL Troponin I 3 OS=Caenorhabditis elegans GN=tni-3 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/61 (67%), Positives = 51/61 (83%), Gaps = 2/61 (3%)

Query: 3  DDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKE 62
          DDAA+KA++ E+  K+AEVRKRMEEA+K    KKGF+TPERKKKLR LL  KAAE+LK++
Sbjct: 19 DDAARKAQEREL--KKAEVRKRMEEAAKKGSKKKGFLTPERKKKLRKLLMMKAAEDLKQQ 76

Query: 63 Q 63
          Q
Sbjct: 77 Q 77

Troponin I is the inhibitory subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to muscle actomyosin ATPase activity.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9GYF1|TNNI2_CAEEL Troponin I 2 OS=Caenorhabditis elegans GN=unc-27 PE=2 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 50/62 (80%), Gaps = 2/62 (3%)

Query: 2  ADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKK 61
           +DA +KA  AE + K+AEVRKR+EEA   KKAKKGF+TPERKKKLR LL  KAAE+LK+
Sbjct: 6  GEDAQRKA--AEREAKKAEVRKRLEEAGNKKKAKKGFLTPERKKKLRKLLMVKAAEDLKR 63

Query: 62 EQ 63
          +Q
Sbjct: 64 QQ 65

Troponin I is the inhibitory subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to muscle actomyosin ATPase activity.

Caenorhabditis elegans (taxid: 6239)

>sp|P05547|TNNI_PONLE Troponin I OS=Pontastacus leptodactylus PE=1 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/58 (82%), Positives = 51/58 (87%), Gaps = 1/58 (1%)

Query: 11 QAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERKVS 68
          Q +IDRK+AEVRKR+EE S  KK KKGFMTPERKKKLRLLLRKKAAEELKKEQERK  
Sbjct: 14 QDDIDRKKAEVRKRLEEQS-LKKQKKGFMTPERKKKLRLLLRKKAAEELKKEQERKAG 70

Troponin I is the actomyosin ATPase inhibitory subunit present in the thin filament regulatory complex.

Pontastacus leptodactylus (taxid: 6717)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
110671496	203	putative troponin I [Diaphorina citri]	1.0	0.334	0.970	8e-15
227072221	199	troponin I variant D [Bombyx mandarina]	1.0	0.341	0.955	4e-14
328701103	434	PREDICTED: hypothetical protein LOC10016	0.970	0.152	0.969	5e-14
239793611	207	ACYPI005885 [Acyrthosiphon pisum]	1.0	0.328	0.941	1e-13
158293951	197	AGAP001053-PC [Anopheles gambiae str. PE	1.0	0.345	0.941	2e-13
347965042	210	AGAP001053-PD [Anopheles gambiae str. PE	1.0	0.323	0.941	2e-13
157127587	197	troponin i [Aedes aegypti] gi|108872889|	1.0	0.345	0.941	2e-13
386764652	199	wings up A, isoform I [Drosophila melano	1.0	0.341	0.941	2e-13
157127595	207	troponin i [Aedes aegypti] gi|108872893|	1.0	0.328	0.941	2e-13
386764654	199	wings up A, isoform J [Drosophila melano	1.0	0.341	0.941	2e-13

>gi|110671496|gb|ABG81999.1| putative troponin I [Diaphorina citri]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 67/68 (98%)

Query: 1  MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK 60
          MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK
Sbjct: 1  MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK 60

Query: 61 KEQERKVS 68
          KEQERK +
Sbjct: 61 KEQERKAA 68

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|227072221|gb|ACP19273.1| troponin I variant D [Bombyx mandarina]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/68 (95%), Positives = 66/68 (97%)

Query: 1  MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK 60
          MADD AKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK
Sbjct: 1  MADDEAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK 60

Query: 61 KEQERKVS 68
          KEQERK +
Sbjct: 61 KEQERKAA 68

Source: Bombyx mandarina

Species: Bombyx mandarina

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701103|ref|XP_001947440.2| PREDICTED: hypothetical protein LOC100164905 [Acyrthosiphon pisum]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/66 (96%), Positives = 65/66 (98%)

Query: 1  MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK 60
          MADD AKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP+RKKKLRLLLRKKAAEELK
Sbjct: 1  MADDEAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPDRKKKLRLLLRKKAAEELK 60

Query: 61 KEQERK 66
          KEQERK
Sbjct: 61 KEQERK 66

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239793611|dbj|BAH72914.1| ACYPI005885 [Acyrthosiphon pisum]

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/68 (94%), Positives = 66/68 (97%)

Query: 1  MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK 60
          MADD AKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP+RKKKLRLLLRKKAAEELK
Sbjct: 1  MADDEAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPDRKKKLRLLLRKKAAEELK 60

Query: 61 KEQERKVS 68
          KEQERK +
Sbjct: 61 KEQERKAA 68

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158293951|ref|XP_001688628.1| AGAP001053-PC [Anopheles gambiae str. PEST] gi|78101795|tpg|DAA05513.1| TPA_inf: troponin I isoform 6b1 [Anopheles gambiae str. PEST] gi|157016469|gb|EDO63969.1| AGAP001053-PC [Anopheles gambiae str. PEST]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/68 (94%), Positives = 66/68 (97%)

Query: 1  MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK 60
          MADD AKKAKQAEI+RKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK
Sbjct: 1  MADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK 60

Query: 61 KEQERKVS 68
          KEQERK +
Sbjct: 61 KEQERKAA 68

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347965042|ref|XP_003437191.1| AGAP001053-PD [Anopheles gambiae str. PEST] gi|347965044|ref|XP_003437192.1| AGAP001053-PG [Anopheles gambiae str. PEST] gi|333469361|gb|EGK97268.1| AGAP001053-PD [Anopheles gambiae str. PEST] gi|333469364|gb|EGK97271.1| AGAP001053-PG [Anopheles gambiae str. PEST]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/68 (94%), Positives = 66/68 (97%)

Query: 1  MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK 60
          MADD AKKAKQAEI+RKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK
Sbjct: 1  MADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK 60

Query: 61 KEQERKVS 68
          KEQERK +
Sbjct: 61 KEQERKAA 68

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157127587|ref|XP_001661103.1| troponin i [Aedes aegypti] gi|108872889|gb|EAT37114.1| AAEL010850-PD [Aedes aegypti]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/68 (94%), Positives = 66/68 (97%)

Query: 1  MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK 60
          MADD AKKAKQAEI+RKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK
Sbjct: 1  MADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK 60

Query: 61 KEQERKVS 68
          KEQERK +
Sbjct: 61 KEQERKAA 68

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386764652|ref|NP_001245733.1| wings up A, isoform I [Drosophila melanogaster] gi|383293465|gb|AFH07446.1| wings up A, isoform I [Drosophila melanogaster]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/68 (94%), Positives = 66/68 (97%)

Query: 1  MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK 60
          MADD AKKAKQAEI+RKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK
Sbjct: 1  MADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK 60

Query: 61 KEQERKVS 68
          KEQERK +
Sbjct: 61 KEQERKAA 68

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157127595|ref|XP_001661107.1| troponin i [Aedes aegypti] gi|108872893|gb|EAT37118.1| AAEL010850-PI [Aedes aegypti]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/68 (94%), Positives = 66/68 (97%)

Query: 1  MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK 60
          MADD AKKAKQAEI+RKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK
Sbjct: 1  MADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK 60

Query: 61 KEQERKVS 68
          KEQERK +
Sbjct: 61 KEQERKAA 68

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386764654|ref|NP_001245734.1| wings up A, isoform J [Drosophila melanogaster] gi|383293466|gb|AFH07447.1| wings up A, isoform J [Drosophila melanogaster]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/68 (94%), Positives = 66/68 (97%)

Query: 1  MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK 60
          MADD AKKAKQAEI+RKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK
Sbjct: 1  MADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK 60

Query: 61 KEQERKVS 68
          KEQERK +
Sbjct: 61 KEQERKAA 68

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
FB|FBgn0004028	269	wupA "wings up A" [Drosophila	0.426	0.107	0.724	5.8e-05

FB|FBgn0004028 wupA "wings up A" [Drosophila melanogaster (taxid:7227)]

 Score = 101 (40.6 bits), Expect = 5.8e-05, P = 5.8e-05
 Identities = 21/29 (72%), Positives = 22/29 (75%)

Query:    13 EIDRKRAEVRKRMEEASXXXXXXXGFMTP 41
             EI+RKRAEVRKRMEEAS       GFMTP
Sbjct:    74 EIERKRAEVRKRMEEASKAKKAKKGFMTP 102


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.127   0.331    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       68        25   0.00091  102 3  10 22  0.45    21
                                                     29  0.44    22


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  270 (29 KB)
  Total size of DFA:  41 KB (2055 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.89u 0.09s 7.98t   Elapsed:  00:00:01
  Total cpu time:  7.89u 0.09s 7.98t   Elapsed:  00:00:01
  Start:  Thu Aug 15 16:11:47 2013   End:  Thu Aug 15 16:11:48 2013

GO:0046716 "muscle cell homeostasis" evidence=IMP

GO:0007399 "nervous system development" evidence=NAS;IMP

GO:0007517 "muscle organ development" evidence=NAS;IMP

GO:0007519 "skeletal muscle tissue development" evidence=IMP

GO:0005861 "troponin complex" evidence=IEA;NAS

GO:0003779 "actin binding" evidence=NAS

GO:0005523 "tropomyosin binding" evidence=NAS

GO:0045214 "sarcomere organization" evidence=IMP

GO:0030239 "myofibril assembly" evidence=IMP

GO:0048738 "cardiac muscle tissue development" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0000280 "nuclear division" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P36188	TNNI_DROME	No assigned EC number	0.9523	0.9264	0.2342	no	N/A
O44572	TNNI4_CAEEL	No assigned EC number	0.6718	0.9264	0.3247	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
KOG3977|consensus	221		99.86
PF00992	132	Troponin: Troponin; InterPro: IPR001978 The tropon	93.79

>KOG3977|consensus

Probab=99.86  E-value=6.6e-22  Score=146.13  Aligned_cols=67  Identities=58%  Similarity=0.738  Sum_probs=64.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1670           1 MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERKV   67 (68)
Q Consensus         1 m~d~~~~~rk~~E~erKkAEvrkrleea~~~kK~kkGflTpErKKkLr~Llm~KAAEelK~eq~~k~   67 (68)
                      |.|+++.+|+.++++.+++|||+||++|+..++.|+||+||+||++||+|||++|||||++||++++
T Consensus         1 ~~dg~~~~rka~~re~kk~evrkrleeA~~~~~~KKgfltpeRKkkLrkLlm~kAaedLkqqq~~kE   67 (221)
T KOG3977|consen    1 EVDGDDAARKAQEREAKKAEVRKRLEEAGMPKKEKKGFLTPERKKKLRKLLMQKAAEDLKQQQELKE   67 (221)
T ss_pred             CCccchhhhhccchhHHHHHHHHHHHHhcccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788889999999999999999999999999999999999999999999999999999999999875

>PF00992 Troponin: Troponin; InterPro: IPR001978 The troponin (Tn) complex regulates Ca2+ induced muscle contraction

Probab=93.79  E-value=0.11  Score=34.98  Aligned_cols=24  Identities=46%  Similarity=0.404  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh
Q psy1670          44 KKKLRLLLRKKAAEELKKEQERKV   67 (68)
Q Consensus        44 KKkLr~Llm~KAAEelK~eq~~k~   67 (68)
                      |++|+.|++.+|+++|..+|+.++
T Consensus         1 K~~lK~L~~~kA~~el~~e~~~ke   24 (132)
T PF00992_consen    1 KRMLKDLLLLKAKIELHFEQRKKE   24 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999999998765

Tn contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin [, , ].; PDB: 1J1D_C 1MXL_I 1LXF_I 2KRD_I 1J1E_F 2L1R_B 2KGB_I 1YTZ_I 1YV0_I 1VDJ_A ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	68
1j1d_C	133	Troponin I, TNI; THIN filament, muscle regulation,	98.98
1j1e_C	180	Troponin I, TNI; THIN filament, muscle regulation,	98.94
1ytz_I	182	Troponin I; muscle, THIN filament, actin binding,	98.73
1a2x_B	47	Troponin I; muscle contraction regulation, complex	97.65

>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2

Probab=98.98  E-value=4.9e-10  Score=75.99  Aligned_cols=34  Identities=35%  Similarity=0.479  Sum_probs=31.8

Q ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1670          34 AKKGFMTPERKKKLRLLLRKKAAEELKKEQERKV   67 (68)
Q Consensus        34 ~kkGflTpErKKkLr~Llm~KAAEelK~eq~~k~   67 (68)
                      .++|||||+||++||.||+++|+|+|++||++++
T Consensus         6 ~~k~~mt~~Rk~~Lk~lll~kA~e~l~kE~e~k~   39 (133)
T 1j1d_C            6 KKKSKISASRKLQLKTLLLQIAKQELEREAEERR   39 (133)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4679999999999999999999999999999875

>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2

Probab=98.94  E-value=7.6e-10  Score=78.35  Aligned_cols=34  Identities=35%  Similarity=0.479  Sum_probs=31.9

Q ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1670          34 AKKGFMTPERKKKLRLLLRKKAAEELKKEQERKV   67 (68)
Q Consensus        34 ~kkGflTpErKKkLr~Llm~KAAEelK~eq~~k~   67 (68)
                      .++|||||+||++||.||+++|||+|++||++++
T Consensus         6 ~kk~~mt~~Rk~~Lk~lll~kA~e~L~~E~e~k~   39 (180)
T 1j1e_C            6 KKKSKISASRKLQLKTLLLQIAKQELEREAEERR   39 (180)
T ss_dssp             CCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999875

>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A

Probab=98.73  E-value=4e-09  Score=74.85  Aligned_cols=34  Identities=26%  Similarity=0.319  Sum_probs=31.4

Q ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1670          34 AKKGFMTPERKKKLRLLLRKKAAEELKKEQERKV   67 (68)
Q Consensus        34 ~kkGflTpErKKkLr~Llm~KAAEelK~eq~~k~   67 (68)
                      .++|||||+||++||.||+++|||+|++||++++
T Consensus         4 ~~k~kmt~~Rk~~Lk~lll~kA~e~L~~E~e~k~   37 (182)
T 1ytz_I            4 EKKRRAATARRQHLKSAMLQLAVTEIEKEAAAKE   37 (182)
T ss_dssp             CSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999875

>1a2x_B Troponin I; muscle contraction regulation, complex (skeletal muscle/muscle protein); 2.30A {Oryctolagus cuniculus} SCOP: j.22.1.1

Probab=97.65  E-value=1.1e-05  Score=46.76  Aligned_cols=31  Identities=29%  Similarity=0.416  Sum_probs=25.4

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1670          37 GFMTPERKKKLRLLLRKKAAEELKKEQERKV   67 (68)
Q Consensus        37 GflTpErKKkLr~Llm~KAAEelK~eq~~k~   67 (68)
                      .+||+.||..|+.|++++|+++|++|+..++
T Consensus         7 ~kms~sRK~~LKslmL~~A~~~Le~E~~~k~   37 (47)
T 1a2x_B            7 NRAITARRQHLKSVMLQIAATELEKEEGRRE   37 (47)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3599999999999999999999999887654

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00