Psyllid ID: psy16837

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MLCCCCCIPTGSGGQWPCLEYKAANKRRSHPRLTARHGDTPLPTIVSAQPPSGGAFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILMGAPGPSSSLPGGGASTCSSDSQSTTSSSSSTGGGAGD
Secondary Structure (PSIPRED)
ccEEEEEEEccccccccHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccEEEcccEEccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccEEEEcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccEEEccccccccccccEEEEcccccccEEEccccccHHHHHHHHHHHHcccHHHHHHHHccccccccccEcccccccccccccccEEEEEccEEcccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mlccccciptgsggqwpcleykaankrrshprltarhgdtplptivsaqppsggafyNYLSawstndalsygasqcslrpepkpwlhvsndyelkipksapliyaqipvslnnlyttrdiTELITQVRGICdefeskglpnypsgIIFYFWQQFSQFKMYFFLAILmgapgpssslpgggastcssdsqsttssssstgggagd
Flexible Loop (DISEMBL)
mlccccciptgsggqwpCLEYKAANKRRSHPrltarhgdtplptIVSAQPPSGGAFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILMGAPGPSSSLPGGGASTcssdsqsttssssstgggagd
Low Complexity Region (SEG)
MLCCCCCIPTGSGGQWPCLEYKAANKRRSHPRLTARHGDTPLPTIVSAQPPSGGAFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILMgapgpssslpgggastcssdsqsttssssstgggagd
Disordered region (IsUnstruct)
*LCCCCCIPTGSGGQWPCLEYKA*****************************GGAFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILMG************************************
Disordered Region (DISOPRED)
MLCCCCCIPTGSGGQWPCLEYKAANKRRSHPRLTARHGDTPLPTIVSAQPPSGGAFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILMGAPGPSSSLPGGGA***********************
Disordered Region (DISEMBL)
MLCCCCCIPTGSGGQWPCLEYKAANKRRSHPRLTARHGDTPLPTIVSAQPPSGGAFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILMGAPGPS*******************************
Disordered Region (DISPRO)
MLCCCCCIPTGSGGQWPCLEYKAANKRRSHPRLTARHGDTPLPTIVSAQPPSGGAFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILMGAPGP********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLCCCCCIPTGSGGQWPCLEYKAANKRRSHPRLTARHGDTPLPTIVSAQPPSGGAFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILMGAPGPSSSLPGGGASTCSSDSQSTTSSSSSTGGGAGD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
P18502	1286	Protein patched OS=Drosop	yes	N/A	0.509	0.080	0.548	1e-28
Q61115	1434	Protein patched homolog 1	yes	N/A	0.544	0.077	0.434	7e-23
Q90693	1442	Protein patched homolog 1	yes	N/A	0.549	0.077	0.422	9e-23
Q98864	1220	Protein patched homolog 1	no	N/A	0.558	0.093	0.428	1e-22
Q13635	1447	Protein patched homolog 1	yes	N/A	0.544	0.076	0.434	3e-22
Q09614	1408	Protein patched homolog 1	yes	N/A	0.485	0.070	0.444	3e-19
O35595	1182	Protein patched homolog 2	no	N/A	0.539	0.093	0.389	1e-15
Q9Y6C5	1203	Protein patched homolog 2	no	N/A	0.539	0.091	0.389	3e-15

>sp|P18502|PTC_DROME Protein patched OS=Drosophila melanogaster GN=ptc PE=2 SV=2

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 73/104 (70%)

Query: 55  AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNL 114
           AFYNYLSAW+TND  +YGASQ  L PEP+ + H  N+Y+LKIPKS PL+YAQ+P  L+ L
Sbjct: 850 AFYNYLSAWATNDVFAYGASQGKLYPEPRQYFHQPNEYDLKIPKSLPLVYAQMPFYLHGL 909

Query: 115 YTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFK 158
             T  I  LI  +R +  ++E  GLPNYPSGI F FW+Q+   +
Sbjct: 910 TDTSQIKTLIGHIRDLSVKYEGFGLPNYPSGIPFIFWEQYMTLR 953

Segmentation polarity protein. Acts as a receptor for the hedgehog protein (HH). Associates with the smoothened protein (SMO) to transduce the hedgehog signal leading to the activation of wingless, decapentaplegic and patched itself. Participates in cell interactions that establish pattern within the segment and the imaginal disks during development. In the absence of HH, represses the constitutive signaling activity of smo through fused (FU).
Drosophila melanogaster (taxid: 7227)

>sp|Q61115|PTC1_MOUSE Protein patched homolog 1 OS=Mus musculus GN=Ptch1 PE=2 SV=1

 Score =  107 bits (266), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 70/115 (60%), Gaps = 4/115 (3%)

Query: 55   AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDY----ELKIPKSAPLIYAQIPVS 110
            AFY YL+AW +ND ++Y ASQ ++RP    W+H   DY     L+IP + P+ YAQ P  
Sbjct: 904  AFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFY 963

Query: 111  LNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
            LN L  T D  E I +VR IC+ + S GL +YP+G  F FW+Q+   + +  L+I
Sbjct: 964  LNGLRDTSDFVEAIEKVRVICNNYTSLGLSSYPNGYPFLFWEQYISLRHWLLLSI 1018

Acts as a receptor for sonic hedgehog (SHH), indian hedgehog (IHH) and desert hedgehog (DHH). Associates with the smoothened protein (SMO) to transduce the hedgehog's proteins signal. Seems to have a tumor suppressor function, as inactivation of this protein is probably a necessary, if not sufficient step for tumorigenesis.

Mus musculus (taxid: 10090)

>sp|Q90693|PTC1_CHICK Protein patched homolog 1 OS=Gallus gallus GN=PTCH1 PE=1 SV=1

 Score =  106 bits (265), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 4/116 (3%)

Query: 54   GAFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDY----ELKIPKSAPLIYAQIPV 109
             AFY YL+AW +ND ++Y ASQ ++RP    W+H   DY     L+IP + P+ YAQ P 
Sbjct: 916  NAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPF 975

Query: 110  SLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
             LN L  T D  E I +VR IC+ + S G+ +YP+G  F FW+Q+   + +  L+I
Sbjct: 976  YLNGLRETSDFVEAIEKVRAICNNYTSLGIASYPNGYPFLFWEQYIGLRHWLLLSI 1031

Acts as a receptor for sonic hedgehog (SHH), indian hedgehog (IHH) and desert hedgehog (DHH). Associates with the smoothened protein (SMO) to transduce the hedgehog's proteins signal.

Gallus gallus (taxid: 9031)

>sp|Q98864|PTC1_DANRE Protein patched homolog 1 OS=Danio rerio GN=ptch1 PE=2 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 68/119 (57%), Gaps = 5/119 (4%)

Query: 50   PPSGGAFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSND---YELKIPKSAPLIYAQ 106
            PP    FY YL+ W +ND L Y ASQ +  P P+ W+H   D     L+IP + PL +AQ
Sbjct: 905  PPE--VFYIYLTVWVSNDPLGYAASQANFYPHPREWIHDKYDTTGENLRIPAAEPLEFAQ 962

Query: 107  IPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
             P  LN L    D  E I  VR IC+EF  +G+ NYP+G  F FW+Q+   + +F L+I
Sbjct: 963  FPFYLNGLRQASDFIEAIESVRTICEEFMRQGIKNYPNGYPFLFWEQYIGLRHWFLLSI 1021

Acts as a receptor for sonic hedgehog (SHH), indian hedgehog (IHH) and desert hedgehog (DHH). Associates with the smoothened protein (SMO) to transduce the hedgehog's proteins signal.

Danio rerio (taxid: 7955)

>sp|Q13635|PTC1_HUMAN Protein patched homolog 1 OS=Homo sapiens GN=PTCH1 PE=1 SV=2

 Score =  104 bits (260), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 68/115 (59%), Gaps = 4/115 (3%)

Query: 55   AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDY----ELKIPKSAPLIYAQIPVS 110
            AFY YL+AW +ND ++Y ASQ ++RP    W+H   DY     L+IP + P+ YAQ P  
Sbjct: 918  AFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFY 977

Query: 111  LNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
            LN L  T D  E I +VR IC  + S GL +YP+G  F FW+Q+   + +  L I
Sbjct: 978  LNGLRDTSDFVEAIEKVRTICSNYTSLGLSSYPNGYPFLFWEQYIGLRHWLLLFI 1032

Acts as a receptor for sonic hedgehog (SHH), indian hedgehog (IHH) and desert hedgehog (DHH). Associates with the smoothened protein (SMO) to transduce the hedgehog's proteins signal. Seems to have a tumor suppressor function, as inactivation of this protein is probably a necessary, if not sufficient step for tumorigenesis.

Homo sapiens (taxid: 9606)

>sp|Q09614|PTC1_CAEEL Protein patched homolog 1 OS=Caenorhabditis elegans GN=ptc-1 PE=1 SV=2

 Score = 95.1 bits (235), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 56/99 (56%)

Query: 56   FYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNLY 115
            FYNYL+AW   D + Y  SQ S  P P  W    N  E  IP + PL Y+QIP  L  L 
Sbjct: 1078 FYNYLTAWFNVDHMMYYVSQASFFPTPPKWELSKNHTENFIPAAEPLAYSQIPFYLTGLT 1137

Query: 116  TTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQF 154
             T  I + I  +R +C+ F  +GLPN+P GI F FW+Q+
Sbjct: 1138 DTAVIVDAIKDIRSVCERFTDQGLPNFPQGIAFTFWEQY 1176

Required but not essential for cytokinesis of mitotically proliferating germ cells.

Caenorhabditis elegans (taxid: 6239)

>sp|O35595|PTC2_MOUSE Protein patched homolog 2 OS=Mus musculus GN=Ptch2 PE=2 SV=2

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 57/113 (50%), Gaps = 3/113 (2%)

Query: 56  FYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSND---YELKIPKSAPLIYAQIPVSLN 112
           FY  L+ W ++D L   ASQ +  P P  WLH   D     L+IP + PL +AQ P  L+
Sbjct: 856 FYMGLTVWVSSDPLGLAASQANFYPPPPEWLHDKYDTTGENLRIPAAQPLEFAQFPFLLH 915

Query: 113 NLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
            L  T D  E I   R  C E    G+  YPSG  F FW+Q+   +  F LA+
Sbjct: 916 GLQKTADFVEAIEGARAACTEAGQAGVHAYPSGSPFLFWEQYLGLRRCFLLAV 968

May have a role in epidermal development. May act as a receptor for Sonic hedgehog (SHH).

Mus musculus (taxid: 10090)

>sp|Q9Y6C5|PTC2_HUMAN Protein patched homolog 2 OS=Homo sapiens GN=PTCH2 PE=2 SV=2

 Score = 82.0 bits (201), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 56/113 (49%), Gaps = 3/113 (2%)

Query: 56  FYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSND---YELKIPKSAPLIYAQIPVSLN 112
           FY  L+ W ++D L   ASQ +  P P  WLH   D     L+IP + PL +AQ P  L 
Sbjct: 856 FYMGLTVWVSSDPLGLAASQANFYPPPPEWLHDKYDTTGENLRIPPAQPLEFAQFPFLLR 915

Query: 113 NLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
            L  T D  E I   R  C E    G+  YPSG  F FW+Q+   +  F LA+
Sbjct: 916 GLQKTADFVEAIEGARAACAEAGQAGVHAYPSGSPFLFWEQYLGLRRCFLLAV 968

May have a role in epidermal development. May act as a receptor for Sonic hedgehog (SHH).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
321479419	1285	putative hedgehog receptor patched [Daph	0.544	0.086	0.621	2e-37
242015824	1320	patched 1, putative [Pediculus humanus c	0.549	0.084	0.616	4e-37
322790929	952	hypothetical protein SINV_80439 [Solenop	0.544	0.116	0.598	4e-35
332030584	1114	Protein patched [Acromyrmex echinatior]	0.598	0.109	0.572	4e-35
340727459	1292	PREDICTED: protein patched-like [Bombus	0.544	0.085	0.580	5e-33
170033498	1211	patched [Culex quinquefasciatus] gi|1678	0.544	0.091	0.576	5e-33
307181007	1207	Protein patched [Camponotus floridanus]	0.544	0.091	0.580	6e-33
380011471	1327	PREDICTED: LOW QUALITY PROTEIN: protein	0.544	0.083	0.580	8e-33
312373266	1344	hypothetical protein AND_17673 [Anophele	0.509	0.077	0.605	9e-33
350421906	1011	PREDICTED: protein patched-like [Bombus	0.544	0.109	0.580	1e-32

>gi|321479419|gb|EFX90375.1| putative hedgehog receptor patched [Daphnia pulex]

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/111 (62%), Positives = 89/111 (80%)

Query: 55  AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNL 114
           AFYNYL+AW TNDAL+Y ASQ SLRP+P+ W H + D ELKIPKS P+IYAQ+P  LNNL
Sbjct: 846 AFYNYLTAWVTNDALAYSASQTSLRPQPRQWYHNAADVELKIPKSQPIIYAQLPFYLNNL 905

Query: 115 YTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
            +T DIT++I QVRGIC +FE +GLPN+P+GI F FW+Q+ + + + FLA+
Sbjct: 906 GSTEDITDMIEQVRGICKKFEDRGLPNFPAGIPFTFWEQYLKLRFFLFLAL 956

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015824|ref|XP_002428547.1| patched 1, putative [Pediculus humanus corporis] gi|212513181|gb|EEB15809.1| patched 1, putative [Pediculus humanus corporis]

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 69/112 (61%), Positives = 88/112 (78%)

Query: 55  AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNL 114
           AFYNYLSAWS NDAL+YGASQ +LRPEP+ W H ++DYELKIPKSAPL+Y Q+P  L+ L
Sbjct: 881 AFYNYLSAWSWNDALAYGASQANLRPEPRQWYHTASDYELKIPKSAPLVYTQLPFYLSGL 940

Query: 115 YTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAIL 166
             T+ IT LI++VR IC +FE +GLPN+PSGI F FW+Q+   +  F LA++
Sbjct: 941 GDTQKITNLISEVRAICQKFEDRGLPNFPSGIPFLFWEQYLALRQNFGLALI 992

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322790929|gb|EFZ15595.1| hypothetical protein SINV_80439 [Solenopsis invicta]

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 67/112 (59%), Positives = 88/112 (78%), Gaps = 1/112 (0%)

Query: 55  AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNL 114
           AFYNYLSAW++NDAL+YGASQ +LRPEP+ W++ SND+ELKIPKS PL YAQ+P  L+ L
Sbjct: 567 AFYNYLSAWASNDALAYGASQANLRPEPRQWIY-SNDHELKIPKSMPLTYAQMPFYLHRL 625

Query: 115 YTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAIL 166
             T+DITELI  VR +C +FE +GLPN+PSGI F FW+Q+   +    +A++
Sbjct: 626 TNTQDITELIGNVRQLCKKFEERGLPNFPSGIPFLFWEQYMDLRFSMSIALM 677

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030584|gb|EGI70272.1| Protein patched [Acromyrmex echinatior]

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/124 (57%), Positives = 95/124 (76%), Gaps = 2/124 (1%)

Query: 55  AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNL 114
           AFYNYLSAW++NDAL+YGASQ +LRPEP+ W+++ ND+ELKIPKS PL YAQ+P  L+ L
Sbjct: 688 AFYNYLSAWASNDALAYGASQANLRPEPRQWIYI-NDHELKIPKSMPLTYAQMPFYLHRL 746

Query: 115 YTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILMGAPGPSS 174
             T+DITELI+ VR +C +FE +GLPN+PSGI+F FW+Q+   +    +A L+ A G S 
Sbjct: 747 TNTQDITELISSVRELCKKFEERGLPNFPSGILFLFWEQYMNLRTSMCIA-LVAALGVSI 805

Query: 175 SLPG 178
            + G
Sbjct: 806 LVVG 809

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727459|ref|XP_003402061.1| PREDICTED: protein patched-like [Bombus terrestris]

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 65/112 (58%), Positives = 86/112 (76%), Gaps = 1/112 (0%)

Query: 55  AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNL 114
           AFYNYLSAW +ND L+YGASQ +LRPEP+ W++ +ND+ELKIPKS PL YAQ+P  L+ L
Sbjct: 862 AFYNYLSAWVSNDVLAYGASQANLRPEPRQWIY-TNDHELKIPKSMPLTYAQMPFYLHKL 920

Query: 115 YTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAIL 166
             T++ITELI  VR +C +FE +GLPN+PSGI F FW+Q+   +    +A+L
Sbjct: 921 TDTQEITELIGNVRKLCKKFEERGLPNFPSGIPFLFWEQYMDLRNCLVIALL 972

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170033498|ref|XP_001844614.1| patched [Culex quinquefasciatus] gi|167874462|gb|EDS37845.1| patched [Culex quinquefasciatus]

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 64/111 (57%), Positives = 80/111 (72%)

Query: 55  AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNL 114
           AFYNYLSAW+ ND L+YGASQ +LRPEP+ W H  +D+ELKIPKSAPL Y Q+P  L+ L
Sbjct: 789 AFYNYLSAWAWNDGLAYGASQGNLRPEPREWFHSPSDFELKIPKSAPLTYTQLPFYLHGL 848

Query: 115 YTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
             T+DI  +I Q+R +   FE +GLPNYPSGI F FW+Q+   +   F AI
Sbjct: 849 SDTQDIKTMIGQIRELSRRFEQRGLPNYPSGIPFLFWEQYMNLRPCLFKAI 899

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307181007|gb|EFN68781.1| Protein patched [Camponotus floridanus]

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/112 (58%), Positives = 88/112 (78%), Gaps = 1/112 (0%)

Query: 55  AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNL 114
           AFYNYLSAW++NDAL+YGASQ +LRPEP+ W++ +ND+ELKIPKS PL YAQ+P  L+ L
Sbjct: 778 AFYNYLSAWASNDALAYGASQANLRPEPRQWIY-TNDHELKIPKSMPLTYAQMPFYLHKL 836

Query: 115 YTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAIL 166
             T++ITELI  +R +C +FE +GLPN+PSGI F FW+Q+   +    +A+L
Sbjct: 837 TDTQEITELIGSIRKLCKKFEERGLPNFPSGIPFLFWEQYMDLRSCLGIALL 888

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011471|ref|XP_003689826.1| PREDICTED: LOW QUALITY PROTEIN: protein patched-like [Apis florea]

 Score =  145 bits (367), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 65/112 (58%), Positives = 87/112 (77%), Gaps = 1/112 (0%)

Query: 55   AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNL 114
            AFYNYLSAW +ND L+YGASQ +LRPEP+ W++ +ND+ELKIPKS PL YAQ+P  L+ L
Sbjct: 896  AFYNYLSAWVSNDVLAYGASQANLRPEPRQWIY-TNDHELKIPKSMPLTYAQMPFYLHKL 954

Query: 115  YTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAIL 166
              T++ITELI+ VR +C +FE +GLPN+PSGI F FW+Q+   +    +A+L
Sbjct: 955  TDTQEITELISSVRKLCKKFEERGLPNFPSGIPFLFWEQYMDLRNCLGIALL 1006

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373266|gb|EFR21041.1| hypothetical protein AND_17673 [Anopheles darlingi]

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 63/104 (60%), Positives = 81/104 (77%)

Query: 55  AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNL 114
           AFYNYLSAW+ ND L+YGASQ +LRPEP+ W+H  +D+ELKIPKSAPL Y Q+P  L+ L
Sbjct: 804 AFYNYLSAWAWNDVLAYGASQGNLRPEPREWVHTPSDFELKIPKSAPLTYTQLPFYLHGL 863

Query: 115 YTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFK 158
             T DI  +I+Q+R +C +FE++GLPNYPSGI F FWQQ+   +
Sbjct: 864 SDTADIKMMISQIRELCSKFEARGLPNYPSGIPFIFWQQYMNLR 907

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350421906|ref|XP_003492995.1| PREDICTED: protein patched-like [Bombus impatiens]

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/112 (58%), Positives = 86/112 (76%), Gaps = 1/112 (0%)

Query: 55  AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNL 114
           AFYNYLSAW +ND L+YGASQ +LRPEP+ W++ +ND+ELKIPKS PL YAQ+P  L+ L
Sbjct: 581 AFYNYLSAWVSNDVLAYGASQANLRPEPRQWIY-TNDHELKIPKSMPLTYAQMPFYLHKL 639

Query: 115 YTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAIL 166
             T++ITELI  VR +C +FE +GLPN+PSGI F FW+Q+   +    +A+L
Sbjct: 640 TDTQEITELIGNVRKLCKKFEERGLPNFPSGIPFLFWEQYMDLRNCLGIALL 691

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
FB|FBgn0003892	1286	ptc "patched" [Drosophila mela	0.490	0.077	0.57	7.7e-28
ZFIN|ZDB-GENE-980526-196	1475	ptch1 "patched 1" [Danio rerio	0.544	0.075	0.452	9.8e-22
UNIPROTKB|F1MVV4	584	PTCH1 "Uncharacterized protein	0.544	0.190	0.434	1.8e-21
UNIPROTKB|Q6UY90	1434	Ptch1 "Protein Ptch1" [Rattus	0.544	0.077	0.443	3.2e-21
MGI|MGI:105373	1434	Ptch1 "patched homolog 1" [Mus	0.544	0.077	0.434	6.7e-21
UNIPROTKB|F1PNE0	1449	PTCH1 "Uncharacterized protein	0.544	0.076	0.426	6.8e-21
UNIPROTKB|Q90693	1442	PTCH1 "Protein patched homolog	0.544	0.076	0.426	8.6e-21
ZFIN|ZDB-GENE-980526-44	1442	ptch2 "patched 2" [Danio rerio	0.558	0.079	0.428	8.6e-21
UNIPROTKB|I3LVF2	1453	PTCH1 "Uncharacterized protein	0.544	0.076	0.434	8.7e-21
UNIPROTKB|Q13635	1447	PTCH1 "Protein patched homolog	0.544	0.076	0.434	2.3e-20

FB|FBgn0003892 ptc "patched" [Drosophila melanogaster (taxid:7227)]

 Score = 313 (115.2 bits), Expect = 7.7e-28, Sum P(2) = 7.7e-28
 Identities = 57/100 (57%), Positives = 72/100 (72%)

Query:    55 AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNL 114
             AFYNYLSAW+TND  +YGASQ  L PEP+ + H  N+Y+LKIPKS PL+YAQ+P  L+ L
Sbjct:   850 AFYNYLSAWATNDVFAYGASQGKLYPEPRQYFHQPNEYDLKIPKSLPLVYAQMPFYLHGL 909

Query:   115 YTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQF 154
               T  I  LI  +R +  ++E  GLPNYPSGI F FW+Q+
Sbjct:   910 TDTSQIKTLIGHIRDLSVKYEGFGLPNYPSGIPFIFWEQY 949

GO:0008158 "hedgehog receptor activity" evidence=IMP;TAS

GO:0005887 "integral to plasma membrane" evidence=NAS;TAS

GO:0007224 "smoothened signaling pathway" evidence=IGI;NAS;IMP;TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0045169 "fusome" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0048477 "oogenesis" evidence=IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0045879 "negative regulation of smoothened signaling pathway" evidence=IGI;TAS

GO:0048099 "anterior/posterior lineage restriction, imaginal disc" evidence=TAS

GO:0007350 "blastoderm segmentation" evidence=NAS

GO:0001746 "Bolwig's organ morphogenesis" evidence=IMP

GO:0030707 "ovarian follicle cell development" evidence=TAS

GO:0007422 "peripheral nervous system development" evidence=TAS

GO:0016021 "integral to membrane" evidence=IEA;TAS

GO:0009880 "embryonic pattern specification" evidence=TAS

GO:0007346 "regulation of mitotic cell cycle" evidence=IMP

GO:0004888 "transmembrane signaling receptor activity" evidence=NAS

GO:0048100 "wing disc anterior/posterior pattern formation" evidence=TAS

GO:0007455 "eye-antennal disc morphogenesis" evidence=IMP

GO:0016311 "dephosphorylation" evidence=TAS

GO:0006508 "proteolysis" evidence=TAS

GO:0009952 "anterior/posterior pattern specification" evidence=NAS

GO:0048103 "somatic stem cell division" evidence=TAS

GO:0042078 "germ-line stem cell division" evidence=TAS

GO:0042306 "regulation of protein import into nucleus" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0035225 "determination of genital disc primordium" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0055088 "lipid homeostasis" evidence=IMP

GO:0030228 "lipoprotein particle receptor activity" evidence=IDA

GO:0008406 "gonad development" evidence=IMP

ZFIN|ZDB-GENE-980526-196 ptch1 "patched 1" [Danio rerio (taxid:7955)]

 Score = 268 (99.4 bits), Expect = 9.8e-22, P = 9.8e-22
 Identities = 52/115 (45%), Positives = 68/115 (59%)

Query:    55 AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDY----ELKIPKSAPLIYAQIPVS 110
             AFY YLSAW +ND ++Y ASQ ++RP P  WLH   D      L IP + P+ YAQ P  
Sbjct:   932 AFYIYLSAWVSNDPVAYAASQANIRPHPPEWLHDRTDSIPASRLNIPAAEPIEYAQFPFY 991

Query:   111 LNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
             LN L  T    E I  VR IC+ F  +GLP+YP+G  F FW+Q+   + +  L+I
Sbjct:   992 LNGLRETPQFVEAIESVRAICNNFSRQGLPSYPNGYPFLFWEQYVGLRHWLLLSI 1046

GO:0016020 "membrane" evidence=IEA

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0048635 "negative regulation of muscle organ development" evidence=IGI

GO:0010002 "cardioblast differentiation" evidence=IGI

GO:0060042 "retina morphogenesis in camera-type eye" evidence=IMP

GO:0001957 "intramembranous ossification" evidence=IMP

GO:0001649 "osteoblast differentiation" evidence=IMP

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0045879 "negative regulation of smoothened signaling pathway" evidence=IMP

UNIPROTKB|F1MVV4 PTCH1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 259 (96.2 bits), Expect = 1.8e-21, P = 1.8e-21
 Identities = 50/115 (43%), Positives = 70/115 (60%)

Query:    55 AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDY----ELKIPKSAPLIYAQIPVS 110
             AFY YL+AW +ND ++Y ASQ ++RP    W+H   DY     L+IP + P+ YAQ P  
Sbjct:   353 AFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFY 412

Query:   111 LNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
             LN L  T D  E I +VR IC+ + S GL +YP+G  F FW+Q+   + +  L+I
Sbjct:   413 LNGLRDTSDFVEAIEKVRTICNNYTSLGLSSYPNGYPFLFWEQYIGLRHWLLLSI 467

GO:0016020 "membrane" evidence=IEA

GO:0008158 "hedgehog receptor activity" evidence=IEA

UNIPROTKB|Q6UY90 Ptch1 "Protein Ptch1" [Rattus norvegicus (taxid:10116)]

 Score = 263 (97.6 bits), Expect = 3.2e-21, P = 3.2e-21
 Identities = 51/115 (44%), Positives = 70/115 (60%)

Query:    55 AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDY----ELKIPKSAPLIYAQIPVS 110
             AFY YL+AW +ND ++Y ASQ ++RP    W+H   DY     L+IP + P+ YAQ P  
Sbjct:   904 AFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFY 963

Query:   111 LNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
             LN L  T D  E I +VR IC+ + S GL +YP+G  F FW+Q+   + +  LAI
Sbjct:   964 LNGLRDTSDFVEAIEKVRVICNNYTSLGLSSYPNGYPFLFWEQYISLRHWLLLAI 1018

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0003007 "heart morphogenesis" evidence=IEA

GO:0005113 "patched binding" evidence=IEA

GO:0005119 "smoothened binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=ISS

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0008544 "epidermis development" evidence=IEA

GO:0008589 "regulation of smoothened signaling pathway" evidence=ISS

GO:0009887 "organ morphogenesis" evidence=ISS

GO:0009953 "dorsal/ventral pattern formation" evidence=ISS

GO:0010157 "response to chlorate" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0015485 "cholesterol binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016485 "protein processing" evidence=ISS

GO:0021904 "dorsal/ventral neural tube patterning" evidence=IEA

GO:0021997 "neural plate axis specification" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=ISS

GO:0030332 "cyclin binding" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0035137 "hindlimb morphogenesis" evidence=IEA

GO:0040015 "negative regulation of multicellular organism growth" evidence=ISS

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043616 "keratinocyte proliferation" evidence=IEA

GO:0045668 "negative regulation of osteoblast differentiation" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IEA

GO:0051782 "negative regulation of cell division" evidence=IEA

GO:0060037 "pharyngeal system development" evidence=IEA

GO:0060603 "mammary gland duct morphogenesis" evidence=IEA

GO:0060644 "mammary gland epithelial cell differentiation" evidence=IEA

GO:0061005 "cell differentiation involved in kidney development" evidence=IEA

GO:0061053 "somite development" evidence=IEA

GO:0071397 "cellular response to cholesterol" evidence=IEA

GO:0072203 "cell proliferation involved in metanephros development" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0097108 "hedgehog family protein binding" evidence=IEA

MGI|MGI:105373 Ptch1 "patched homolog 1" [Mus musculus (taxid:10090)]

 Score = 260 (96.6 bits), Expect = 6.7e-21, P = 6.7e-21
 Identities = 50/115 (43%), Positives = 70/115 (60%)

Query:    55 AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDY----ELKIPKSAPLIYAQIPVS 110
             AFY YL+AW +ND ++Y ASQ ++RP    W+H   DY     L+IP + P+ YAQ P  
Sbjct:   904 AFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFY 963

Query:   111 LNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
             LN L  T D  E I +VR IC+ + S GL +YP+G  F FW+Q+   + +  L+I
Sbjct:   964 LNGLRDTSDFVEAIEKVRVICNNYTSLGLSSYPNGYPFLFWEQYISLRHWLLLSI 1018

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IMP

GO:0001841 "neural tube formation" evidence=IDA

GO:0001843 "neural tube closure" evidence=IMP

GO:0003007 "heart morphogenesis" evidence=IMP

GO:0005113 "patched binding" evidence=IDA

GO:0005119 "smoothened binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=TAS

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0005901 "caveola" evidence=ISO

GO:0007165 "signal transduction" evidence=IDA;TAS

GO:0007224 "smoothened signaling pathway" evidence=IGI;IDA

GO:0007346 "regulation of mitotic cell cycle" evidence=IMP

GO:0007389 "pattern specification process" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0008158 "hedgehog receptor activity" evidence=TAS

GO:0008201 "heparin binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=NAS

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0008544 "epidermis development" evidence=IMP

GO:0008589 "regulation of smoothened signaling pathway" evidence=IGI;IMP

GO:0009887 "organ morphogenesis" evidence=IMP

GO:0009953 "dorsal/ventral pattern formation" evidence=IGI

GO:0010157 "response to chlorate" evidence=IDA

GO:0010875 "positive regulation of cholesterol efflux" evidence=ISO

GO:0014069 "postsynaptic density" evidence=ISO

GO:0015485 "cholesterol binding" evidence=ISO;TAS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016485 "protein processing" evidence=IMP

GO:0021522 "spinal cord motor neuron differentiation" evidence=IGI

GO:0021532 "neural tube patterning" evidence=ISO

GO:0021904 "dorsal/ventral neural tube patterning" evidence=IMP

GO:0021997 "neural plate axis specification" evidence=IMP

GO:0030326 "embryonic limb morphogenesis" evidence=IGI;IMP

GO:0030332 "cyclin binding" evidence=ISO;IPI

GO:0030496 "midbody" evidence=IDA

GO:0030879 "mammary gland development" evidence=IMP

GO:0032403 "protein complex binding" evidence=IDA

GO:0032880 "regulation of protein localization" evidence=IDA;IMP

GO:0035108 "limb morphogenesis" evidence=ISO

GO:0035137 "hindlimb morphogenesis" evidence=IMP

GO:0040008 "regulation of growth" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0042593 "glucose homeostasis" evidence=IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0043616 "keratinocyte proliferation" evidence=IMP

GO:0044294 "dendritic growth cone" evidence=ISO

GO:0044295 "axonal growth cone" evidence=ISO

GO:0045668 "negative regulation of osteoblast differentiation" evidence=ISO

GO:0045879 "negative regulation of smoothened signaling pathway" evidence=IGI;NAS;IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IMP

GO:0051782 "negative regulation of cell division" evidence=IMP

GO:0060037 "pharyngeal system development" evidence=ISO

GO:0060603 "mammary gland duct morphogenesis" evidence=IMP

GO:0060644 "mammary gland epithelial cell differentiation" evidence=IMP

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=IMP

GO:0061005 "cell differentiation involved in kidney development" evidence=IGI

GO:0061053 "somite development" evidence=ISO;IMP

GO:0071397 "cellular response to cholesterol" evidence=ISO

GO:0072203 "cell proliferation involved in metanephros development" evidence=IMP

GO:0072372 "primary cilium" evidence=IDA

GO:0072661 "protein targeting to plasma membrane" evidence=ISO

GO:0097108 "hedgehog family protein binding" evidence=ISO

UNIPROTKB|F1PNE0 PTCH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 260 (96.6 bits), Expect = 6.8e-21, P = 6.8e-21
 Identities = 49/115 (42%), Positives = 70/115 (60%)

Query:    55 AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDY----ELKIPKSAPLIYAQIPVS 110
             AFY YL+AW +ND ++Y ASQ ++RP    W+H   DY     L+IP + P+ YAQ P  
Sbjct:   915 AFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFY 974

Query:   111 LNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
             LN L  T D  E I +VR IC+ + S GL +YP+G  F FW+Q+   + +  L++
Sbjct:   975 LNGLRDTSDFVEAIEKVRSICNNYTSLGLSSYPNGYPFLFWEQYIGLRHWLLLSV 1029

GO:0016021 "integral to membrane" evidence=IEA

GO:0008158 "hedgehog receptor activity" evidence=IEA

UNIPROTKB|Q90693 PTCH1 "Protein patched homolog 1" [Gallus gallus (taxid:9031)]

 Score = 259 (96.2 bits), Expect = 8.6e-21, P = 8.6e-21
 Identities = 49/115 (42%), Positives = 70/115 (60%)

Query:    55 AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDY----ELKIPKSAPLIYAQIPVS 110
             AFY YL+AW +ND ++Y ASQ ++RP    W+H   DY     L+IP + P+ YAQ P  
Sbjct:   917 AFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFY 976

Query:   111 LNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
             LN L  T D  E I +VR IC+ + S G+ +YP+G  F FW+Q+   + +  L+I
Sbjct:   977 LNGLRETSDFVEAIEKVRAICNNYTSLGIASYPNGYPFLFWEQYIGLRHWLLLSI 1031

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

ZFIN|ZDB-GENE-980526-44 ptch2 "patched 2" [Danio rerio (taxid:7955)]

 Score = 259 (96.2 bits), Expect = 8.6e-21, P = 8.6e-21
 Identities = 51/119 (42%), Positives = 68/119 (57%)

Query:    50 PPSGGAFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDY---ELKIPKSAPLIYAQ 106
             PP    FY YL+ W +ND L Y ASQ +  P P+ W+H   D     L+IP + PL +AQ
Sbjct:   905 PPE--VFYIYLTVWVSNDPLGYAASQANFYPHPREWIHDKYDTTGENLRIPAAEPLEFAQ 962

Query:   107 IPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
              P  LN L    D  E I  VR IC+EF  +G+ NYP+G  F FW+Q+   + +F L+I
Sbjct:   963 FPFYLNGLRQASDFIEAIESVRTICEEFMRQGIKNYPNGYPFLFWEQYIGLRHWFLLSI 1021

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0048635 "negative regulation of muscle organ development" evidence=IGI

GO:0010002 "cardioblast differentiation" evidence=IGI

GO:0001649 "osteoblast differentiation" evidence=IMP

GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IMP

GO:0043010 "camera-type eye development" evidence=IMP

GO:0007224 "smoothened signaling pathway" evidence=IMP

UNIPROTKB|I3LVF2 PTCH1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 259 (96.2 bits), Expect = 8.7e-21, P = 8.7e-21
 Identities = 50/115 (43%), Positives = 70/115 (60%)

Query:    55 AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDY----ELKIPKSAPLIYAQIPVS 110
             AFY YL+AW +ND ++Y ASQ ++RP    W+H   DY     L+IP + P+ YAQ P  
Sbjct:   921 AFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFY 980

Query:   111 LNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
             LN L  T D  E I +VR IC+ + S GL +YP+G  F FW+Q+   + +  L+I
Sbjct:   981 LNGLRDTSDFVEAIEKVRTICNNYTSLGLSSYPNGYPFLFWEQYIGLRHWLLLSI 1035

GO:0097108 "hedgehog family protein binding" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0072203 "cell proliferation involved in metanephros development" evidence=IEA

GO:0071397 "cellular response to cholesterol" evidence=IEA

GO:0061053 "somite development" evidence=IEA

GO:0061005 "cell differentiation involved in kidney development" evidence=IEA

GO:0060644 "mammary gland epithelial cell differentiation" evidence=IEA

GO:0060603 "mammary gland duct morphogenesis" evidence=IEA

GO:0060037 "pharyngeal system development" evidence=IEA

GO:0051782 "negative regulation of cell division" evidence=IEA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0045668 "negative regulation of osteoblast differentiation" evidence=IEA

GO:0043616 "keratinocyte proliferation" evidence=IEA

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0040015 "negative regulation of multicellular organism growth" evidence=IEA

GO:0035137 "hindlimb morphogenesis" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030332 "cyclin binding" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0021997 "neural plate axis specification" evidence=IEA

GO:0021904 "dorsal/ventral neural tube patterning" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0015485 "cholesterol binding" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0010157 "response to chlorate" evidence=IEA

GO:0008589 "regulation of smoothened signaling pathway" evidence=IEA

GO:0008544 "epidermis development" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005119 "smoothened binding" evidence=IEA

GO:0005113 "patched binding" evidence=IEA

GO:0003007 "heart morphogenesis" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008158 "hedgehog receptor activity" evidence=IEA

UNIPROTKB|Q13635 PTCH1 "Protein patched homolog 1" [Homo sapiens (taxid:9606)]

 Score = 255 (94.8 bits), Expect = 2.3e-20, P = 2.3e-20
 Identities = 50/115 (43%), Positives = 68/115 (59%)

Query:    55 AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDY----ELKIPKSAPLIYAQIPVS 110
             AFY YL+AW +ND ++Y ASQ ++RP    W+H   DY     L+IP + P+ YAQ P  
Sbjct:   918 AFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFY 977

Query:   111 LNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
             LN L  T D  E I +VR IC  + S GL +YP+G  F FW+Q+   + +  L I
Sbjct:   978 LNGLRDTSDFVEAIEKVRTICSNYTSLGLSSYPNGYPFLFWEQYIGLRHWLLLFI 1032

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0008544 "epidermis development" evidence=IEA

GO:0010157 "response to chlorate" evidence=IEA

GO:0021904 "dorsal/ventral neural tube patterning" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0035137 "hindlimb morphogenesis" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0043616 "keratinocyte proliferation" evidence=IEA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IEA

GO:0051782 "negative regulation of cell division" evidence=IEA

GO:0060603 "mammary gland duct morphogenesis" evidence=IEA

GO:0060644 "mammary gland epithelial cell differentiation" evidence=IEA

GO:0061005 "cell differentiation involved in kidney development" evidence=IEA

GO:0072203 "cell proliferation involved in metanephros development" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0003007 "heart morphogenesis" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEP;ISS

GO:0009887 "organ morphogenesis" evidence=ISS

GO:0009953 "dorsal/ventral pattern formation" evidence=ISS

GO:0016485 "protein processing" evidence=ISS

GO:0030326 "embryonic limb morphogenesis" evidence=ISS

GO:0040015 "negative regulation of multicellular organism growth" evidence=ISS

GO:0008589 "regulation of smoothened signaling pathway" evidence=ISS

GO:0072001 "renal system development" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005113 "patched binding" evidence=IPI

GO:0097108 "hedgehog family protein binding" evidence=IPI

GO:0005119 "smoothened binding" evidence=IPI

GO:0030332 "cyclin binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0045668 "negative regulation of osteoblast differentiation" evidence=IMP

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0045879 "negative regulation of smoothened signaling pathway" evidence=ISS;TAS

GO:0071397 "cellular response to cholesterol" evidence=ISS;IMP

GO:0010875 "positive regulation of cholesterol efflux" evidence=IDA

GO:0015485 "cholesterol binding" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0072661 "protein targeting to plasma membrane" evidence=IDA

GO:0005901 "caveola" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0021997 "neural plate axis specification" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0060037 "pharyngeal system development" evidence=IMP

GO:0021532 "neural tube patterning" evidence=IMP

GO:0061053 "somite development" evidence=IMP

GO:0035108 "limb morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P18502	PTC_DROME	No assigned EC number	0.5480	0.5098	0.0808	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	204
TIGR00918	1145	TIGR00918, 2A060602, The Eukaryotic (Putative) Ste	1e-37

>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter (EST) Family

 Score =  138 bits (348), Expect = 1e-37
 Identities = 55/114 (48%), Positives = 70/114 (61%), Gaps = 3/114 (2%)

Query: 55  AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDY---ELKIPKSAPLIYAQIPVSL 111
           AFY YLSAW +ND ++Y ASQ ++ P P  WLH  NDY    L+IP + PL YAQ P  L
Sbjct: 858 AFYIYLSAWVSNDPVAYAASQANIYPHPPEWLHDKNDYDPENLRIPAAEPLEYAQFPFYL 917

Query: 112 NNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
           N L  T    E I  VR IC+ +E  GLP+YPSG  F FW+Q+   + +  L+I
Sbjct: 918 NGLRETSQFVEAIEHVRAICNNYEGFGLPSYPSGYPFLFWEQYMGLRHWLLLSI 971

Length = 1145

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
KOG1935|consensus	1143		100.0
TIGR00918	1145	2A060602 The Eukaryotic (Putative) Sterol Transpor	99.97
TIGR00917	1204	2A060601 Niemann-Pick C type protein family. The m	99.17
PF02460	798	Patched: Patched family; InterPro: IPR003392 The t	96.99
KOG1933|consensus	1201		86.17
KOG1934|consensus	868		80.31

>KOG1935|consensus

Probab=100.00  E-value=3.6e-51  Score=401.64  Aligned_cols=138  Identities=41%  Similarity=0.677  Sum_probs=133.4

Q ss_pred             cceeecCCCCCCCCCccccC-------CCCchhhhhhhhccccCCCcccccccCCCCCCCCCCcccCCccccccCCCCCe
Q psy16837         30 HPRLTARHGDTPLPTIVSAQ-------PPSGGAFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPL  102 (204)
Q Consensus        30 ~LLvQTG~~~~Pin~~~l~~-------~I~p~aFYnYLTaW~snD~l~Y~aSQan~~P~Pp~W~h~~~d~~l~IP~A~PL  102 (204)
                      +|++|||+.+|  |.+||++       +|||++||||||||+|||+|+|+||||++||+||+|.|+ ++++..||++|||
T Consensus       785 kL~~qtG~~~~--~~~~l~k~rlVd~giInp~~FYnyLTaW~~~D~~~y~aSQa~~yP~pP~w~h~-~~~~~~iP~aePl  861 (1143)
T KOG1935|consen  785 KLLCQTGSLDN--DAGRLGKIRLVDAGIINPEAFYNYLTAWFNNDPMAYYASQASFYPTPPEWEHD-NDYAKEIPAAEPL  861 (1143)
T ss_pred             HHHHhcCCccc--hhHhhhhhhhhhccccCHHHHHHhhhhhcccchHHhhhhccCCCCCCcccccc-ccccccccccccc
Confidence            59999999999  8888876       499999999999999999999999999999999999999 9999999999999


Q ss_pred             eeeecceeecCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhhhHhHhHHHHHHHHhhhccc
Q psy16837        103 IYAQIPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILMGAP  170 (204)
Q Consensus       103 ~yaQ~PFYL~gL~~T~diveaI~~VRaICdeyt~~GlpnyPsG~PF~FWEQYL~LR~~L~lAI~iia~  170 (204)
                      +|+||||||+||++|++|+|+|++||++|++|+.+||||||+|+||+|||||+.||++|+++|+|++.
T Consensus       862 ~yaQmPFyL~gL~dTa~Ivk~I~~iR~~c~~~~s~Gl~nyPsGiPF~FWEQYl~Lrg~l~~~IcIil~  929 (1143)
T KOG1935|consen  862 EYAQMPFYLNGLTDTADIVKAIESIRASCEEYTSLGLPNYPSGIPFTFWEQYLTLRGNLLQAICIILL  929 (1143)
T ss_pred             hhccCchHHhhhhhHHHHHHHHHHHHHHHhhcccCCCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999864

>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family

Probab=99.97  E-value=4.2e-31  Score=266.51  Aligned_cols=138  Identities=42%  Similarity=0.804  Sum_probs=129.3

Q ss_pred             cceeecCCCCCCCCCccccC--------CCCchhhhhhhhccccCCCcccccccCCCCCCCCCCcccCCccc---cccCC
Q psy16837         30 HPRLTARHGDTPLPTIVSAQ--------PPSGGAFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYE---LKIPK   98 (204)
Q Consensus        30 ~LLvQTG~~~~Pin~~~l~~--------~I~p~aFYnYLTaW~snD~l~Y~aSQan~~P~Pp~W~h~~~d~~---l~IP~   98 (204)
                      +|++|||+.++|+|++++++        +++|++||+||++|+++|+++|++||++++|+||+|.|++++.+   ++||+
T Consensus       825 ~l~~qtg~~~~p~~~~~~~~~r~v~~~g~~~~~~F~~yL~~wl~~~~~~y~~sq~~~~p~~~~~~~~~~~~~~~~~~I~a  904 (1145)
T TIGR00918       825 KLLVQTGHRDKPVDKEQLTTQRLVNADGIINPNAFYIYLSAWVSNDPVAYAASQANIYPHPPEWLHDKNDYDPENLRIPA  904 (1145)
T ss_pred             hhcccccccCCccccccccccccccccCCCCHHHHHHHHHHHHcCCcchhhcccccccCCcchhcccccccccccccccc
Confidence            58999999999999998654        48899999999999999999999999999999999999987642   67999


Q ss_pred             CCCeeeeecceeecCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhhhHhHhHHHHHHHHhhh
Q psy16837         99 SAPLIYAQIPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILM  167 (204)
Q Consensus        99 A~PL~yaQ~PFYL~gL~~T~diveaI~~VRaICdeyt~~GlpnyPsG~PF~FWEQYL~LR~~L~lAI~i  167 (204)
                      ++|++|+||+||+++|++++|++++++++|+|+++++..|++.||.|++|+|||||+.++..+++.+++
T Consensus       905 s~~i~~~~F~fy~~~L~~~~d~i~al~~~R~Ia~~~~~~~~~vf~~g~~fvf~eQy~~i~~~~~~~l~~  973 (1145)
T TIGR00918       905 AEPLEYAQFPFYLNGLRETSQFVEAIEHVRAICNNYEGFGLPSYPSGYPFLFWEQYMGLRHWLLLSISV  973 (1145)
T ss_pred             cccchhheeeEEEcCCCCHHHHHHHHHHHHHHHHhhhhcCceeccCCCceeHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999989999999999999999999999998777666

>TIGR00917 2A060601 Niemann-Pick C type protein family

Probab=99.17  E-value=6e-11  Score=121.44  Aligned_cols=108  Identities=15%  Similarity=0.192  Sum_probs=84.0

Q ss_pred             CCchhhhhhhhccccCCCcccccccCCCCCCCCCCcccCCccccccCCCCCeeeeecceeecCCCCchHHHHHHHHHHHH
Q psy16837         51 PSGGAFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNLYTTRDITELITQVRGI  130 (204)
Q Consensus        51 I~p~aFYnYLTaW~snD~l~Y~aSQan~~P~Pp~W~h~~~d~~l~IP~A~PL~yaQ~PFYL~gL~~T~diveaI~~VRaI  130 (204)
                      .+++.||+||..|++.++-.+-+.++.      .|+++.-+  +.-....-+.-++|.+|++.|++++|+++++|+.|.|
T Consensus       947 p~~~~F~~~l~~fl~~~~~~~c~~gg~------~~y~~~v~--~~~~~~~~I~aS~f~~~h~~l~~~~d~i~a~~~~R~i 1018 (1204)
T TIGR00917       947 PSTTQFKEYLPFFLNDNPSADCAKGGH------AAYSSAVD--LQGHANTIIQASYFMTYHTPLNTQADFINALRAAREI 1018 (1204)
T ss_pred             CCHHHHHHHHHHHhcCCCccccccccc------cccccceE--eecCCCceEEEEEEEEeccCCCCHHHHHHHHHHHHHH
Confidence            346889999999999888777777665      22221111  0000011267789999999999999999999999999


Q ss_pred             HHHHHh-cCCCCCCcccchhhhhHhHhHHHHHHHHhh
Q psy16837        131 CDEFES-KGLPNYPSGIIFYFWQQFSQFKMYFFLAIL  166 (204)
Q Consensus       131 Cdeyt~-~GlpnyPsG~PF~FWEQYL~LR~~L~lAI~  166 (204)
                      ++++++ .+++.||-+..|.|||||+.++..++..++
T Consensus      1019 a~~i~~~~~~~vfpys~~~vf~eQY~~i~~~~~~~l~ 1055 (1204)
T TIGR00917      1019 SANVTRSLKMEVFPYSVFYVFFEQYLTIWSDALINLG 1055 (1204)
T ss_pred             HHHhhhccCCccccCcCceehhHHHHHHHHHHHHHHH
Confidence            999985 699999999999999999999987765543

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.

>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog

Probab=96.99  E-value=0.00066  Score=66.44  Aligned_cols=69  Identities=17%  Similarity=0.235  Sum_probs=57.5

Q ss_pred             CCCCeeeeecceeecCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhhhHhHhHHHHHHHHhhhc
Q psy16837         98 KSAPLIYAQIPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILMG  168 (204)
Q Consensus        98 ~A~PL~yaQ~PFYL~gL~~T~diveaI~~VRaICdeyt~~GlpnyPsG~PF~FWEQYL~LR~~L~lAI~ii  168 (204)
                      ....+.-.++.+.++++.++.+.++++++.|+|++++.+.++-.|.  ..|.|||||+.++...+..+++.
T Consensus       586 ~~~~I~a~rf~~~~~~~~~~~~~~~~~~~~R~i~~~~~~~~~~~~~--~~~~~~dq~~~i~~~~~~~~~~a  654 (798)
T PF02460_consen  586 DTTQISAFRFTTQLKNLSDWSDRIEAMKDWRQIADKYSDFNVFVFS--PFFIFYDQYLSIVPETIQNIGIA  654 (798)
T ss_pred             CccceeeEEEEEEccCCCCHHHHHHHHHHHHHhhhcceecceEeec--cchhhHhhhhhcchHHHHHHHHH
Confidence            3446777888888899999999999999999999999987776665  56778999999999887765543

In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane

>KOG1933|consensus

Probab=86.17  E-value=0.81  Score=48.87  Aligned_cols=62  Identities=13%  Similarity=0.280  Sum_probs=55.4

Q ss_pred             CeeeeecceeecCCCCchHHHHHHHHHHHHHHHHHh--cCCCCCCcccchhhhhHhHhHHHHHH
Q psy16837        101 PLIYAQIPVSLNNLYTTRDITELITQVRGICDEFES--KGLPNYPSGIIFYFWQQFSQFKMYFF  162 (204)
Q Consensus       101 PL~yaQ~PFYL~gL~~T~diveaI~~VRaICdeyt~--~GlpnyPsG~PF~FWEQYL~LR~~L~  162 (204)
                      -++-+++=-|.+.|.+..||+++.+..|.+..+.++  +|+..||--.-|.|-|||+.+-.+.+
T Consensus       959 ~iqas~F~tyh~~l~ns~d~~~alr~ar~~s~~i~r~~~~~~vfpys~fy~fyEqylti~~~~~ 1022 (1201)
T KOG1933|consen  959 GIQASYFMTYHTPLSNSSDFIKALRAARKLSADITRSLKGVEVFPYSVFYSFYEQYLTIWTDTL 1022 (1201)
T ss_pred             cchhhhhhhhccccccHHHHHHHHHHhhhhhhhhhhcccccceeeeeeehhHHHHHHHHhhhhh
Confidence            466778888999999999999999999999999887  59999999999999999999876654

>KOG1934|consensus

Probab=80.31  E-value=3.8  Score=42.46  Aligned_cols=65  Identities=20%  Similarity=0.309  Sum_probs=52.7

Q ss_pred             CeeeeecceeecCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhhhHhHhHHHHHHHHhhh
Q psy16837        101 PLIYAQIPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILM  167 (204)
Q Consensus       101 PL~yaQ~PFYL~gL~~T~diveaI~~VRaICdeyt~~GlpnyPsG~PF~FWEQYL~LR~~L~lAI~i  167 (204)
                      .+.-.++.+=++++.+..+-.++.++.|.|+++|.+-.+-.|=.  -|.|-+||+.+....+..+++
T Consensus       621 ~i~~f~f~~~~~~~~~~~~~~~~~~~~R~ia~~~~~fnvtvf~~--~~~f~Dq~~~v~~~ti~~~~~  685 (868)
T KOG1934|consen  621 IIFAFRFTIGLTNLTKWNERTRLLETWRKIADEYSDFNVTVFDP--SFVFLDQYLSVVPVTIQSIVI  685 (868)
T ss_pred             eEEEEEEEEEEeccCCHHHHHHHHHHHHHHHhhccCCCeEEecC--chHHHHHHHHhccHHHHHHHH
Confidence            67788888999999999999999999999999997666622211  178999999998887766554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00