Psyllid ID: psy1694

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
Protein Sequence
MHISLLYQHLIIYSIICISGITGEFFTLSGIAIAAGIAYFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSGERYITIH
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHcccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHcccccccccccccccEEEEEEccccHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEccHHcccccHHHHHHHHcccccccccccHHcEEEEEEcccHHHHHHHHHHHHHHccccHHHcc
Coil and Loop (DISEMBL)
MHISLLYQHLIIYSIICIsgitgefftLSGIAIAAGIayfspsiinskflngfgggeactdkfiqsSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISlhglpgtgknyvtDFIVSSIFKRykdkgtsrfvhkfnsrihfpnenhVSLYRLQLTNWIISNVTACDRAIFIfdevdkfpkglldviipfidhhavynqISFQNTIFLFLSNSGGTEIMNTFLELRKSgeryitih
Flexible Loop (DISEMBL)
MHISLLYQHLIIYSIICISGITGEFFTLSGIAIAAGIAYFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHkfnsrihfpnenHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLelrksgeryitih
Low Complexity Region (SEG)
MHISLLYQHLiiysiicisgiTGEFFTLSGIAIAAGIAYFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSGERYITIH
Disordered region (IsUnstruct)
**ISLLYQHLIIYSIICISGITGEFFTLSGIAIAAGIAYFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRK*********
Disordered Region (DISOPRED)
*HISLLYQHLIIYSIICISGITGEFFTLSGIAIAAGIAYFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNH*****HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRK*********
Disordered Region (DISEMBL)
MHISLLYQHLIIYSIICISGITGEFFTLSGIAIAAGIAYFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSGERYITIH
Disordered Region (DISPRO)
MHISLLYQHLIIYSIICISGITGEFFTLSGIAIAAGIAYFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSGE******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHISLLYQHLIIYSIICISGITGEFFTLSGIAIAAGIAYFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSGERYITIH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	247	2.2.26 [Sep-21-2011]
Q9ERA9	273	Torsin-1A (Fragment) OS=C	N/A	N/A	0.732	0.663	0.406	8e-33
Q9ER41	336	Torsin-1B OS=Mus musculus	yes	N/A	0.846	0.622	0.374	9e-33
O14657	336	Torsin-1B OS=Homo sapiens	yes	N/A	0.829	0.610	0.378	9e-33
Q9ER39	333	Torsin-1A OS=Mus musculus	no	N/A	0.732	0.543	0.390	1e-31
O14656	332	Torsin-1A OS=Homo sapiens	no	N/A	0.732	0.545	0.395	1e-31
Q60HG2	332	Torsin-1A OS=Macaca fasci	N/A	N/A	0.732	0.545	0.401	1e-31
A4FUH1	321	Torsin-2A OS=Bos taurus G	no	N/A	0.789	0.607	0.362	8e-30
Q8R1J9	321	Torsin-2A OS=Mus musculus	no	N/A	0.663	0.510	0.392	1e-29
Q5JU69	321	Torsin-2A OS=Homo sapiens	no	N/A	0.663	0.510	0.398	2e-29
Q6AYR4	321	Torsin-2A OS=Rattus norve	no	N/A	0.663	0.510	0.386	9e-29

>sp|Q9ERA9|TOR1A_CRICR Torsin-1A (Fragment) OS=Cricetus cricetus GN=TOR1A PE=2 SV=1

 Score =  140 bits (353), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 76/187 (40%), Positives = 112/187 (59%), Gaps = 6/187 (3%)

Query: 56  GEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGL 115
            E C  K  +S +   L++ L   + GQ LA   I  A+     N     K L +SLHG 
Sbjct: 1   AECCGQK--RSLSREALQKDLDDKLFGQHLAKKVILNAVSGFLSNP-KPKKPLTLSLHGW 57

Query: 116 PGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT 175
            GTGKN+ +  I  +I   Y+    S +VH F + +HFP+ ++V+LY+ QL  WI  NV+
Sbjct: 58  TGTGKNFASKIIAENI---YEGGLNSDYVHLFVATLHFPHASNVTLYKDQLQMWIRGNVS 114

Query: 176 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 235
           AC R+IFIFDE+DK   GL+D I PF+D++ V +++S+Q  IF+FLSN+G   I +  L+
Sbjct: 115 ACARSIFIFDEMDKMHAGLIDAIKPFLDYYDVVDEVSYQKAIFIFLSNAGAERITDVALD 174

Query: 236 LRKSGER 242
             KSG++
Sbjct: 175 FWKSGKQ 181

May serve as a molecular chaperone assisting in the proper folding of secreted and/or membrane proteins (By similarity). In the nucleus, displaces the nuclear membrane proteins SUN2, SYNE2 and nesprin-3, leaving nuclear pores and SUN1 unchanged.
Cricetus cricetus (taxid: 10034)

>sp|Q9ER41|TOR1B_MOUSE Torsin-1B OS=Mus musculus GN=Tor1b PE=2 SV=2

 Score =  140 bits (353), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 130/227 (57%), Gaps = 18/227 (7%)

Query: 21  ITGEFFTLS-GIAIAAGIA---YFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQL 76
           + G F  +S GIAI A  A   Y S +    +F       E C ++  +  N   L+  L
Sbjct: 21  VAGAFEPVSVGIAIGAVSALTGYLSYTDFYCRFT------ECCHEE--RPLNTSALKLDL 72

Query: 77  KQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK 136
           ++ + GQ LA   I  AL   F+N  ++ K L +SLHG  GTGKN+++  +  +++    
Sbjct: 73  EEKLFGQHLATEVILKALTG-FRNNKNSKKPLTLSLHGWAGTGKNFISQIVAENLYP--- 128

Query: 137 DKG-TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLL 195
            KG  S FVH F S +HFP+E  + +Y+ QL  WI  NV+AC  ++FIFDE+DK   G++
Sbjct: 129 -KGLKSNFVHLFVSTLHFPHEQKIKVYQDQLQKWIRGNVSACGSSVFIFDEMDKLHPGII 187

Query: 196 DVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSGER 242
           D I PF+D++   + IS++  IF+FLSN+GG  I  T L+  ++G +
Sbjct: 188 DAIKPFLDYYEQVDGISYRRAIFIFLSNAGGDLITKTALDFWRAGRK 234

May serve as a molecular chaperone assisting in the proper folding of secreted and/or membrane proteins.

Mus musculus (taxid: 10090)

>sp|O14657|TOR1B_HUMAN Torsin-1B OS=Homo sapiens GN=TOR1B PE=1 SV=2

 Score =  140 bits (353), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 125/222 (56%), Gaps = 17/222 (7%)

Query: 30  GIAIAAGIA---YFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELA 86
           G+AI A  A   Y S + I  +F       E C ++  +  N   L+  L++ + GQ LA
Sbjct: 31  GLAIGAASAITGYLSYNDIYCRF------AECCREE--RPLNASALKLDLEEKLFGQHLA 82

Query: 87  ISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVH 145
              I  AL   F+N  +  K L +SLHG  GTGKN+V+  +  ++      KG  S FVH
Sbjct: 83  TEVIFKALTG-FRNNKNPKKPLTLSLHGWAGTGKNFVSQIVAENLHP----KGLKSNFVH 137

Query: 146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHH 205
            F S +HFP+E  + LY+ QL  WI  NV+AC  ++FIFDE+DK   G++D I PF+D++
Sbjct: 138 LFVSTLHFPHEQKIKLYQDQLQKWIRGNVSACANSVFIFDEMDKLHPGIIDAIKPFLDYY 197

Query: 206 AVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSGERYITIH 247
              + +S++  IF+FLSN+GG  I  T L+  ++G +   I 
Sbjct: 198 EQVDGVSYRKAIFIFLSNAGGDLITKTALDFWRAGRKREDIQ 239

May serve as a molecular chaperone assisting in the proper folding of secreted and/or membrane proteins.

Homo sapiens (taxid: 9606)

>sp|Q9ER39|TOR1A_MOUSE Torsin-1A OS=Mus musculus GN=Tor1a PE=1 SV=1

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/187 (39%), Positives = 111/187 (59%), Gaps = 6/187 (3%)

Query: 56  GEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGL 115
            E C    ++S +   L++ L   + GQ LA   I  A+     N     K L +SLHG 
Sbjct: 48  AECCGQ--MRSLSREALQKDLDNKLFGQHLAKKVILNAVSGFLSNP-KPKKPLTLSLHGW 104

Query: 116 PGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT 175
            GTGKN+ +  I  +I   Y+    S +VH F + +HFP+ ++++ Y+ QL  WI  NV+
Sbjct: 105 TGTGKNFASKIIAENI---YEGGLNSDYVHLFVATLHFPHASNITQYKDQLQMWIRGNVS 161

Query: 176 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 235
           AC R+IFIFDE+DK   GL+D I PF+D++ V +++S+Q  IF+FLSN+G   I +  L+
Sbjct: 162 ACARSIFIFDEMDKMHAGLIDAIKPFLDYYDVVDEVSYQKAIFIFLSNAGAERITDVALD 221

Query: 236 LRKSGER 242
             KSG++
Sbjct: 222 FWKSGKQ 228

May serve as a molecular chaperone assisting in the proper folding of secreted and/or membrane proteins (By similarity). In the nucleus, displaces the nuclear membrane proteins SUN2, SYNE2 and nesprin-3, leaving nuclear pores and SUN1 unchanged.

Mus musculus (taxid: 10090)

>sp|O14656|TOR1A_HUMAN Torsin-1A OS=Homo sapiens GN=TOR1A PE=1 SV=1

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/187 (39%), Positives = 114/187 (60%), Gaps = 6/187 (3%)

Query: 56  GEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGL 115
            E C  K  +S +   L++ L  ++ GQ LA   I  A+   F N     K L +SLHG 
Sbjct: 47  AECCGQK--RSLSREALQKDLDDNLFGQHLAKKIILNAVFG-FINNPKPKKPLTLSLHGW 103

Query: 116 PGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT 175
            GTGKN+V+  I  +I   Y+    S +VH F + +HFP+ ++++LY+ QL  WI  NV+
Sbjct: 104 TGTGKNFVSKIIAENI---YEGGLNSDYVHLFVATLHFPHASNITLYKDQLQLWIRGNVS 160

Query: 176 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 235
           AC R+IFIFDE+DK   GL+D I PF+D++ + + +S+Q  +F+FLSN+G   I +  L+
Sbjct: 161 ACARSIFIFDEMDKMHAGLIDAIKPFLDYYDLVDGVSYQKAMFIFLSNAGAERITDVALD 220

Query: 236 LRKSGER 242
             +SG++
Sbjct: 221 FWRSGKQ 227

May serve as a molecular chaperone assisting in the proper folding of secreted and/or membrane proteins. In the nucleus, displaces the nuclear membrane proteins SUN2, SYNE2 and nesprin-3/C14orf49, leaving nuclear pores and SUN1 unchanged.

Homo sapiens (taxid: 9606)

>sp|Q60HG2|TOR1A_MACFA Torsin-1A OS=Macaca fascicularis GN=TOR1A PE=2 SV=1

 Score =  136 bits (343), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/187 (40%), Positives = 113/187 (60%), Gaps = 6/187 (3%)

Query: 56  GEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGL 115
            E C  K  +S +   L++ L   + GQ LA   I  A+   F N     K L +SLHG 
Sbjct: 47  AECCGQK--RSLSREALQKDLDNKLFGQHLAKKIILNAVFG-FINNPKPKKPLTLSLHGW 103

Query: 116 PGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT 175
            GTGKN+V+  I  +I   Y+    S +VH F + +HFP+ ++++LY+ QL  WI  NV+
Sbjct: 104 TGTGKNFVSKIIAENI---YEGGLNSDYVHLFVATLHFPHASNITLYKDQLQLWIRGNVS 160

Query: 176 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 235
           AC R+IFIFDE+DK   GL+D I PF+D++ + + +S+Q  IF+FLSN+G   I +  L+
Sbjct: 161 ACARSIFIFDEMDKMHAGLIDAIKPFLDYYDLVDGVSYQKAIFIFLSNAGAERITDVALD 220

Query: 236 LRKSGER 242
             +SG++
Sbjct: 221 FWRSGKQ 227

May serve as a molecular chaperone assisting in the proper folding of secreted and/or membrane proteins (By similarity). In the nucleus, displaces the nuclear membrane proteins SUN2, SYNE2 and nesprin-3, leaving nuclear pores and SUN1 unchanged.

Macaca fascicularis (taxid: 9541)

>sp|A4FUH1|TOR2A_BOVIN Torsin-2A OS=Bos taurus GN=TOR2A PE=2 SV=1

 Score =  130 bits (327), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 75/207 (36%), Positives = 114/207 (55%), Gaps = 12/207 (5%)

Query: 33  IAAGIAYFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICG 92
           ++A  A +  S +   F      G  C   F    + + LE  L QH+ GQ LA S +  
Sbjct: 21  VSAAAASWDLSSLRCNF------GSFCECDF--QPDFQGLECDLAQHLAGQHLARSLVVK 72

Query: 93  ALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH 152
           ALK   Q+    TK L +SLHG  GTGK+YV+  +   +F+   D   S  VH F+  IH
Sbjct: 73  ALKAFLQDPA-PTKPLVLSLHGWTGTGKSYVSSLLAHYLFR---DGLRSPHVHHFSPVIH 128

Query: 153 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQIS 212
           FP+ +H+  Y+  L +W+  N+T C R++F+FDE+DK   GL++V+ PF+    V    +
Sbjct: 129 FPHPSHLERYKKDLKSWVQGNLTVCSRSLFLFDEMDKLAPGLIEVLRPFLGSSWVVYGTN 188

Query: 213 FQNTIFLFLSNSGGTEIMNTFLELRKS 239
           ++  IF+F+SN+GG +I    LE  +S
Sbjct: 189 YRKAIFIFISNTGGEQINQVVLEAWRS 215

Bos taurus (taxid: 9913)

>sp|Q8R1J9|TOR2A_MOUSE Torsin-2A OS=Mus musculus GN=Tor2a PE=2 SV=1

 Score =  129 bits (325), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 102/168 (60%), Gaps = 4/168 (2%)

Query: 72  LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 131
           LE  L QH+ GQ LA + +  +LK   Q+    +K L +SLHG  GTGK+YV+  +   +
Sbjct: 52  LECDLAQHLAGQHLAKALVVKSLKAFVQDPA-PSKPLVLSLHGWTGTGKSYVSSLLAQHL 110

Query: 132 FKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP 191
           F+   D   S  VH F+  IHFP+ +    Y+ +L +W+  N+TAC R++F+FDE+DK P
Sbjct: 111 FR---DGLRSPHVHHFSPIIHFPHPSRTEQYKKELKSWVQGNLTACGRSLFLFDEMDKLP 167

Query: 192 KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKS 239
            GL++V+ PF+    V    +++  IF+F+SN+GG +I    LE  +S
Sbjct: 168 PGLMEVLQPFLGPSWVVYGTNYRKAIFIFISNAGGEQINQVALEAWRS 215

Mus musculus (taxid: 10090)

>sp|Q5JU69|TOR2A_HUMAN Torsin-2A OS=Homo sapiens GN=TOR2A PE=2 SV=1

 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 101/168 (60%), Gaps = 4/168 (2%)

Query: 72  LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 131
           LE  L QH+ GQ LA + +  ALK  F      TK L +SLHG  GTGK+YV+  +   +
Sbjct: 52  LECDLAQHLAGQHLAKALVVKALKA-FVRDPAPTKPLVLSLHGWTGTGKSYVSSLLAHYL 110

Query: 132 FKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP 191
           F+       S  VH F+  +HFP+ +H+  Y+  L +W+  N+TAC R++F+FDE+DK P
Sbjct: 111 FQ---GGLRSPRVHHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRSLFLFDEMDKMP 167

Query: 192 KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKS 239
            GL++V+ PF+    V    +++  IF+F+SN+GG +I    LE  +S
Sbjct: 168 PGLMEVLRPFLGSSWVVYGTNYRKAIFIFISNTGGKQINQVALEAWRS 215

Homo sapiens (taxid: 9606)

>sp|Q6AYR4|TOR2A_RAT Torsin-2A OS=Rattus norvegicus GN=Tor2a PE=2 SV=1

 Score =  127 bits (318), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 102/168 (60%), Gaps = 4/168 (2%)

Query: 72  LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 131
           LE  L +H+ GQ LA + +  +LK   Q+    +K L +SLHG  GTGK+YV+  +   +
Sbjct: 52  LECDLARHLAGQHLAKALVVKSLKAFVQDPA-PSKPLVLSLHGWTGTGKSYVSSLLAQYL 110

Query: 132 FKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP 191
           F+       S  VH F+  IHFP+ +H   Y+ +L +W+  N+TAC R++F+FDE+DK P
Sbjct: 111 FR---GGLRSPHVHHFSPIIHFPHPSHTEQYKNELKSWVQGNLTACGRSLFLFDEMDKLP 167

Query: 192 KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKS 239
            GL++V+ PF+    V    +++  IF+F+SN+GG +I    LE  +S
Sbjct: 168 PGLMEVLKPFLGPSWVVYGTNYRKAIFIFISNTGGEQINQVALEAWRS 215

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
443708149	348	hypothetical protein CAPTEDRAFT_168452 [	0.842	0.597	0.396	1e-35
91076772	341	PREDICTED: similar to Torsin family prot	0.724	0.524	0.415	2e-34
348570402	332	PREDICTED: torsin-1A-like [Cavia porcell	0.728	0.542	0.413	5e-33
126297832	338	PREDICTED: torsin-1B-like [Monodelphis d	0.834	0.609	0.384	5e-33
194033707	336	PREDICTED: torsin-1B-like [Sus scrofa]	0.829	0.610	0.387	5e-33
324518625	296	Torsin-1B [Ascaris suum]	0.668	0.557	0.438	8e-33
410979366	327	PREDICTED: torsin-1B [Felis catus]	0.829	0.626	0.382	8e-33
344271670	336	PREDICTED: torsin-1B-like [Loxodonta afr	0.947	0.696	0.357	2e-32
348524336	337	PREDICTED: torsin-1B-like [Oreochromis n	0.906	0.664	0.377	4e-32
359320466	336	PREDICTED: torsin-1B-like [Canis lupus f	0.829	0.610	0.387	4e-32

>gi|443708149|gb|ELU03404.1| hypothetical protein CAPTEDRAFT_168452 [Capitella teleta]

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 129/222 (58%), Gaps = 14/222 (6%)

Query: 21  ITGEFFTLSGIAIAAGIAYFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHV 80
           IT    +++ I I+   A F    I SKFL      E+C D +++  + + L+  L   +
Sbjct: 35  ITTGVASITAIGISTLAANFGS--IKSKFL------ESCDDNWLKK-DTQGLKNDLSTRL 85

Query: 81  HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT 140
           HGQ L I ++  A++ H   R+  +KAL +S HG  G GKNYV  FI   +   Y     
Sbjct: 86  HGQHLVIENVVKAIQAH--KRHLPSKALVMSFHGWTGCGKNYVGRFIAEHL---YHQGMK 140

Query: 141 SRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIP 200
           S+FVH F +  HFP+ + +  Y+ Q+ +WI  N+TAC +++FIFDEVDK P GLLD+I+P
Sbjct: 141 SKFVHLFVATHHFPHASRIETYKDQVRDWIKGNITACPQSMFIFDEVDKMPPGLLDIILP 200

Query: 201 FIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSGER 242
           FIDHH   N + ++++IFLFLSN+GG  I     E    G +
Sbjct: 201 FIDHHEEINGVDYRHSIFLFLSNTGGNLINRKTHEYWSQGRK 242

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|91076772|ref|XP_973777.1| PREDICTED: similar to Torsin family protein [Tribolium castaneum] gi|270001920|gb|EEZ98367.1| hypothetical protein TcasGA2_TC000824 [Tribolium castaneum]

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/183 (41%), Positives = 115/183 (62%), Gaps = 4/183 (2%)

Query: 57  EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 116
           E C++  I + +   LE+ LK+H++GQ L +  +  AL++H+ + +   KAL +S HG P
Sbjct: 46  ECCSEHSIHA-DFDGLEDALKKHIYGQHLVLDIVTNALRSHWADNHKPQKALTLSFHGWP 104

Query: 117 GTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA 176
           G+GKNYVT FIV +++K Y  K  S+FVH F  R+HF +EN V  Y+  L  WI  N T 
Sbjct: 105 GSGKNYVTKFIVENMYK-YGSK--SKFVHHFIGRMHFSSENKVKEYQENLQEWIKGNTTN 161

Query: 177 CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL 236
           C + +FIFDEVDK P  +L++I P ID+    + + +++ +F+FLSN+G   I    LE+
Sbjct: 162 CGKQLFIFDEVDKMPSRVLNIIKPMIDYRDDVDGVDYRDCVFIFLSNTGADLINEHVLEM 221

Query: 237 RKS 239
            K 
Sbjct: 222 WKE 224

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348570402|ref|XP_003470986.1| PREDICTED: torsin-1A-like [Cavia porcellus]

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 113/186 (60%), Gaps = 6/186 (3%)

Query: 56  GEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGL 115
            E C  +  +S +   L++ L   + GQ LA   I  A+     N     K L +SLHG 
Sbjct: 48  AECCGQR--RSLSREALQKDLDNRLFGQHLAKKVILNAVTGFLSNP-KPKKPLTLSLHGW 104

Query: 116 PGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT 175
            GTGKN+V+  I  +I   Y+    S +VH F + +HFP+ ++V+LY+ QL  WI  NV+
Sbjct: 105 TGTGKNFVSKIIAENI---YEGGLNSDYVHLFVATLHFPHASNVTLYKDQLQLWIRGNVS 161

Query: 176 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 235
           AC R+IFIFDE+DK P GL+D I PF+D++ V +++S+Q  IF+FLSN+G   IM+  L+
Sbjct: 162 ACARSIFIFDEMDKMPAGLIDAIKPFLDYYDVVDEVSYQRAIFIFLSNAGAERIMDVALD 221

Query: 236 LRKSGE 241
             +SG 
Sbjct: 222 FWRSGR 227

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|126297832|ref|XP_001369279.1| PREDICTED: torsin-1B-like [Monodelphis domestica]

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 127/221 (57%), Gaps = 15/221 (6%)

Query: 30  GIAIAAG---IAYFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELA 86
           GIAI A      YFS   +  +F+      E C ++  Q  N   L+  L++ + GQ LA
Sbjct: 33  GIAIGAASVLTGYFSYPDLYCRFV------ECCREE--QPLNASALKLDLEEKLFGQHLA 84

Query: 87  ISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK 146
              I  AL   F+N  +  K L +SLHG  GTGKN+V+  +  ++   + +   S FVH 
Sbjct: 85  REVILKALTG-FRNNKNPKKPLTLSLHGWAGTGKNFVSQIVAKNL---HPEGLKSNFVHL 140

Query: 147 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA 206
           F S +HFP+E  + LY+ QL  WI  NV++C R++FIFDE+DK  +GL+D I PF+D++ 
Sbjct: 141 FVSTLHFPHEQKIKLYQEQLQKWIRGNVSSCARSVFIFDEMDKLHRGLIDAIKPFLDYYE 200

Query: 207 VYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSGERYITIH 247
             + IS++  IF+FLSN+GG  I    L+  K+G++   I 
Sbjct: 201 QVDGISYRKAIFIFLSNAGGDLITRMALDFWKAGKKREDIQ 241

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194033707|ref|XP_001929298.1| PREDICTED: torsin-1B-like [Sus scrofa]

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 126/222 (56%), Gaps = 17/222 (7%)

Query: 30  GIAIAAG---IAYFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELA 86
           GIAI        Y S + +  +F       E C ++  Q  N    + +L++ + GQ LA
Sbjct: 31  GIAIGTASVLTGYLSYTELFCRF------AECCREE--QPLNASAFKLELEERLFGQHLA 82

Query: 87  ISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVH 145
              +  AL   F+N  +  KAL +SLHG  GTGKN+V+  +  ++ +    KG  S FVH
Sbjct: 83  TEVLLKALTG-FRNNKNPKKALTLSLHGWAGTGKNFVSQIVAENLHR----KGLKSNFVH 137

Query: 146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHH 205
            F S +HFP+E HV LY+ QL  WI  NV+AC  ++FIFDE+DK   GL+D I PF+D++
Sbjct: 138 LFVSTLHFPHEQHVKLYQDQLQRWIRGNVSACANSVFIFDEMDKLHPGLIDAIKPFLDYY 197

Query: 206 AVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSGERYITIH 247
              + +S++  IF+FLSN+GG  I  T L+  ++G R   I 
Sbjct: 198 EQIDGVSYRKAIFIFLSNAGGDLITKTALDFWRAGRRREDIQ 239

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|324518625|gb|ADY47157.1| Torsin-1B [Ascaris suum]

 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 75/171 (43%), Positives = 106/171 (61%), Gaps = 6/171 (3%)

Query: 72  LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 131
           L   ++Q ++GQ LA   +  AL++HF N  +  KAL IS HG  G GKNY+T  I  ++
Sbjct: 6   LRRTMRQRLYGQHLAQETVLPALQSHFNNE-NPKKALVISFHGWTGCGKNYLTSMIAENM 64

Query: 132 FKRYKDKG-TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF 190
           FK    KG  S +VH F S +HF N N ++ Y+  L  WI  NV+ C+R++FIFDEVDK 
Sbjct: 65  FK----KGMKSEYVHLFISTLHFANPNEIATYQQNLREWIHGNVSLCERSLFIFDEVDKM 120

Query: 191 PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSGE 241
           P  ++D I PFIDH+     + ++ +IF+FLSNSGG EI    L   ++G+
Sbjct: 121 PPKVMDAIKPFIDHYDNLEGVDYRKSIFIFLSNSGGNEITEKTLRHYQAGK 171

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|410979366|ref|XP_003996056.1| PREDICTED: torsin-1B [Felis catus]

 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 127/222 (57%), Gaps = 17/222 (7%)

Query: 30  GIAIAAGIA---YFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELA 86
           GIA+ A  A   Y S + +  +F       E C ++  Q  N   L+ +L++ + GQ LA
Sbjct: 22  GIALGAASALTGYLSYTDLYCRF------AECCREE--QRLNASALKLELEEKLFGQHLA 73

Query: 87  ISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVH 145
              I  AL   F+N  +  K L +SLHG  GTGKN+V+  +  ++      KG  S FVH
Sbjct: 74  TEVILKALTG-FKNNKNPKKPLTLSLHGWAGTGKNFVSQIVAENL----HSKGLKSNFVH 128

Query: 146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHH 205
            F S +HFP+E H+ LY+ QL  WI  NV+AC  ++FIFDE+DK   G++D I PF+D++
Sbjct: 129 LFVSTLHFPHEQHIKLYQDQLQGWIRGNVSACASSVFIFDEMDKLHPGVIDAIKPFLDYY 188

Query: 206 AVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSGERYITIH 247
              + +S++  IF+FLSN+GG  I  T L+  ++G +   I 
Sbjct: 189 EQVDGVSYRKAIFMFLSNAGGDLITKTALDFWRAGRKREDIQ 230

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344271670|ref|XP_003407660.1| PREDICTED: torsin-1B-like [Loxodonta africana]

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/252 (35%), Positives = 138/252 (54%), Gaps = 18/252 (7%)

Query: 1   MHISLLYQHLIIYSIICISGITGEFFTLS-GIAIAAGIA---YFSPSIINSKFLNGFGGG 56
           M ++     + +  ++  + +   F  +S GIAI A  A   Y S +    +F       
Sbjct: 1   MQLAGRLAGVAVLRLLLAAQVVSAFEPISVGIAIGAASALTGYLSYTDFYCRF------A 54

Query: 57  EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 116
           E C  +  Q  N   L+  L++ + GQ LA   I  AL   F+N  +  KAL +SLHG  
Sbjct: 55  ECCRAE--QPLNASALKLDLEEKLFGQHLATEVILKALIG-FKNNKNPKKALTLSLHGWA 111

Query: 117 GTGKNYVTDFIVSSIFKRYKDKG-TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT 175
           GTGKN+V+  +  +++     KG  S FVH F S +HFP+E  + LY+ QL NWI  NV+
Sbjct: 112 GTGKNFVSQIVAENLYS----KGLKSNFVHLFVSTLHFPHEQKIKLYQDQLQNWIRGNVS 167

Query: 176 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 235
           AC  ++FIFDE+DK   GL+D I PF+D++   + +S++  IF+FLSN+GG  I    L+
Sbjct: 168 ACAGSVFIFDEMDKLHPGLIDAIKPFLDYYEQVDGVSYRKAIFIFLSNAGGDLITKMALD 227

Query: 236 LRKSGERYITIH 247
             ++G++   I 
Sbjct: 228 FWRAGKKREDIQ 239

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348524336|ref|XP_003449679.1| PREDICTED: torsin-1B-like [Oreochromis niloticus]

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 88/233 (37%), Positives = 134/233 (57%), Gaps = 9/233 (3%)

Query: 10  LIIYSIICISGITGEFFTLSGIAIAAGIAYFSPSIINSKFLNGFGG-GEACTDKFIQSSN 68
           L+++ ++C SG T     +S   IA G+A     I+ +++ N F    E C  ++I S N
Sbjct: 9   LLLWMLVC-SGTTQAIEPIS-TTIAVGMAAALTGIL-ARYQNIFYYFHECCRPEWI-SFN 64

Query: 69  VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIV 128
              L   L   + GQ +A   I  A+     N  +  K L +SLHG  GTGKN+V+  I 
Sbjct: 65  KTGLRNDLDTKLFGQHIASRIILKAVSGFMSNE-NPKKPLVLSLHGWTGTGKNFVSKLIA 123

Query: 129 SSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD 188
            +I+K   D   S FVH F S +HFP+++  + Y+ QL  WI  NVT C+R++FIFDE+D
Sbjct: 124 ENIYKEGMD---SSFVHVFTSTLHFPHQSQKATYKSQLQQWIKGNVTNCERSMFIFDEMD 180

Query: 189 KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSGE 241
           K   GL+D I P++D++   + +S++ +IF+FLSN+GG  I+ T L+  K G 
Sbjct: 181 KMHPGLIDSIKPYLDYYDKLDGVSYRKSIFIFLSNAGGESIIQTVLDFWKQGR 233

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|359320466|ref|XP_003639349.1| PREDICTED: torsin-1B-like [Canis lupus familiaris]

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 126/222 (56%), Gaps = 17/222 (7%)

Query: 30  GIAIAAGIA---YFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELA 86
           GIAIAA  A   Y S + +  +F       E C ++  Q  N   L+ +L++ + GQ LA
Sbjct: 31  GIAIAAASALTGYLSYTDLFCRF------AECCLEE--QRLNASALKLELEEKLFGQHLA 82

Query: 87  ISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVH 145
              I  AL   F+N  +  K L +SLHG  GTGKN+V+  +  ++      KG  S FVH
Sbjct: 83  TEVILKALTG-FKNNKNPKKPLTLSLHGWAGTGKNFVSQIVAENL----HSKGLKSNFVH 137

Query: 146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHH 205
            F S +HFP+E  + LY+ QL  WI  NV+AC  ++FIFDE+DK   G++D I PF+D++
Sbjct: 138 LFVSTLHFPHEQQIKLYQDQLQAWIRGNVSACASSVFIFDEMDKLHPGIIDAIKPFLDYY 197

Query: 206 AVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSGERYITIH 247
              + +SF+  IF+FLSN+GG  I    L+  ++G +   I 
Sbjct: 198 EQVDGVSFRKAIFIFLSNAGGDLITKIALDFWRAGRKREDIQ 239

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
UNIPROTKB|F1S0Y7	336	TOR1B "Uncharacterized protein	0.821	0.604	0.392	1.3e-34
UNIPROTKB|F1PD54	342	TOR1B "Uncharacterized protein	0.809	0.584	0.391	5.2e-33
RGD|1308431	336	Tor1b "torsin family 1, member	0.821	0.604	0.387	5.2e-33
MGI|MGI:1353605	336	Tor1b "torsin family 1, member	0.850	0.625	0.373	6.7e-33
UNIPROTKB|F1P2B1	344	TOR1A "Uncharacterized protein	0.834	0.598	0.377	8.5e-33
UNIPROTKB|O14657	336	TOR1B "Torsin-1B" [Homo sapien	0.809	0.595	0.382	2.3e-32
UNIPROTKB|D4A7J2	336	Tor1b "Protein Tor1b" [Rattus	0.821	0.604	0.383	2.3e-32
UNIPROTKB|F1MBM5	270	TOR1B "Uncharacterized protein	0.672	0.614	0.418	2.9e-32
UNIPROTKB|Q68G38	333	Dyt1 "Dystonia 1" [Rattus norv	0.728	0.540	0.397	2e-31
UNIPROTKB|A5PK75	333	TOR1A "Uncharacterized protein	0.728	0.540	0.397	4.2e-31

UNIPROTKB|F1S0Y7 TOR1B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 84/214 (39%), Positives = 125/214 (58%)

Query:    33 IAAGIAYFSPSIINS--KFLNGFGG-GEACTDKFIQSSNVRVLEEQLKQHVHGQELAISH 89
             I  GIA  + S++     +   F    E C ++  Q  N    + +L++ + GQ LA   
Sbjct:    28 ITLGIAIGTASVLTGYLSYTELFCRFAECCREE--QPLNASAFKLELEERLFGQHLATEV 85

Query:    90 ICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT-SRFVHKFN 148
             +  AL   F+N  +  KAL +SLHG  GTGKN+V+  +  ++ +    KG  S FVH F 
Sbjct:    86 LLKALTG-FRNNKNPKKALTLSLHGWAGTGKNFVSQIVAENLHR----KGLKSNFVHLFV 140

Query:   149 SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY 208
             S +HFP+E HV LY+ QL  WI  NV+AC  ++FIFDE+DK   GL+D I PF+D++   
Sbjct:   141 STLHFPHEQHVKLYQDQLQRWIRGNVSACANSVFIFDEMDKLHPGLIDAIKPFLDYYEQI 200

Query:   209 NQISFQNTIFLFLSNSGGTEIMNTFLELRKSGER 242
             + +S++  IF+FLSN+GG  I  T L+  ++G R
Sbjct:   201 DGVSYRKAIFIFLSNAGGDLITKTALDFWRAGRR 234

GO:0071763 "nuclear membrane organization" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1PD54 TOR1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 85/217 (39%), Positives = 125/217 (57%)

Query:    30 GIAIAAGIA---YFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELA 86
             GIAIAA  A   Y S + +  +F       E C ++  Q  N   L+ +L++ + GQ LA
Sbjct:    37 GIAIAAASALTGYLSYTDLFCRF------AECCLEE--QRLNASALKLELEEKLFGQHLA 88

Query:    87 ISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT-SRFVH 145
                I  AL   F+N  +  K L +SLHG  GTGKN+V+  +  ++      KG  S FVH
Sbjct:    89 TEVILKALTG-FKNNKNPKKPLTLSLHGWAGTGKNFVSQIVAENLHS----KGLKSNFVH 143

Query:   146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHH 205
              F S +HFP+E  + LY+ QL  WI  NV+AC  ++FIFDE+DK   G++D I PF+D++
Sbjct:   144 LFVSTLHFPHEQQIKLYQDQLQAWIRGNVSACASSVFIFDEMDKLHPGIIDAIKPFLDYY 203

Query:   206 AVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSGER 242
                + +SF+  IF+FLSN+GG  I    L+  ++G +
Sbjct:   204 EQVDGVSFRKAIFIFLSNAGGDLITKIALDFWRAGRK 240

GO:0005524 "ATP binding" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

RGD|1308431 Tor1b "torsin family 1, member B" [Rattus norvegicus (taxid:10116)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 83/214 (38%), Positives = 125/214 (58%)

Query:    30 GIAIAAGIAYFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELAISH 89
             GIAI A ++  +  +  S F   F   E C ++  +  N   L+  L++ + GQ LA   
Sbjct:    31 GIAIGA-VSALTGYLSYSDFYCRFT--ECCHEE--RPLNTSALKLDLEEKLFGQHLATEV 85

Query:    90 ICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT-SRFVHKFN 148
             I  AL   F+N  +  K L +SLHG  GTGKN+V+  +  +++     KG  S FVH F 
Sbjct:    86 ILKALTG-FRNNKNPKKPLTLSLHGWAGTGKNFVSQIVAENLYP----KGLKSNFVHLFV 140

Query:   149 SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY 208
             S +HFP+E  + LY+ QL  WI  NV+AC  ++FIFDE+DK   G++D I PF+D++   
Sbjct:   141 STLHFPHEQKIKLYQDQLQKWIRGNVSACGSSVFIFDEMDKLHPGIIDAIKPFLDYYEQV 200

Query:   209 NQISFQNTIFLFLSNSGGTEIMNTFLELRKSGER 242
             + IS++  IF+FLSN+GG  I  T L+  ++G +
Sbjct:   201 DGISYRKAIFIFLSNAGGDLITKTTLDFWRAGRK 234

GO:0005524 "ATP binding" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA;ISO

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA;ISO

GO:0071763 "nuclear membrane organization" evidence=IEA;ISO

MGI|MGI:1353605 Tor1b "torsin family 1, member B" [Mus musculus (taxid:10090)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 83/222 (37%), Positives = 130/222 (58%)

Query:    23 GEFFTLS-GIAIAAGIAYFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVH 81
             G F  +S GIAI A ++  +  +  + F   F   E C ++  +  N   L+  L++ + 
Sbjct:    23 GAFEPVSVGIAIGA-VSALTGYLSYTDFYCRFT--ECCHEE--RPLNTSALKLDLEEKLF 77

Query:    82 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT- 140
             GQ LA   I  AL   F+N  ++ K L +SLHG  GTGKN+++  +  +++     KG  
Sbjct:    78 GQHLATEVILKALTG-FRNNKNSKKPLTLSLHGWAGTGKNFISQIVAENLYP----KGLK 132

Query:   141 SRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIP 200
             S FVH F S +HFP+E  + +Y+ QL  WI  NV+AC  ++FIFDE+DK   G++D I P
Sbjct:   133 SNFVHLFVSTLHFPHEQKIKVYQDQLQKWIRGNVSACGSSVFIFDEMDKLHPGIIDAIKP 192

Query:   201 FIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSGER 242
             F+D++   + IS++  IF+FLSN+GG  I  T L+  ++G +
Sbjct:   193 FLDYYEQVDGISYRRAIFIFLSNAGGDLITKTALDFWRAGRK 234

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=ISO;IDA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=ISO;IDA

GO:0071763 "nuclear membrane organization" evidence=IGI

UNIPROTKB|F1P2B1 TOR1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 80/212 (37%), Positives = 123/212 (58%)

Query:    30 GIAIAAGIAYFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELAISH 89
             G+AIA   A     II+   L  +   E C  +  Q      L+E L + + GQ L    
Sbjct:    33 GLAIAGAAASALTGIISYPRLYCYFR-ECCLQRHEQRV-AAALQESLDRRLFGQHLVSKV 90

Query:    90 ICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS 149
             +  A++    N     K LA+SLHG  GTGKN+V+  I  SI+KR      S +VH+F +
Sbjct:    91 VVRAVRGFLSNAQAK-KPLALSLHGWTGTGKNFVSKIIAESIYKRGLK---SNYVHQFVA 146

Query:   150 RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN 209
              +HFP+ + ++LY+ QL +WI  NV+ C R+IFIFDE+DK   GL+D I PF+D++ + +
Sbjct:   147 TLHFPHAHSINLYKDQLQSWIRGNVSICPRSIFIFDEMDKMHAGLIDAIKPFLDYYELLD 206

Query:   210 QISFQNTIFLFLSNSGGTEIMNTFLELRKSGE 241
              +S++  IF+FLSN+G  +I    L+  ++G+
Sbjct:   207 GVSYRQAIFIFLSNAGAEKITEVALDFWRNGK 238

GO:0005524 "ATP binding" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0071763 "nuclear membrane organization" evidence=IEA

UNIPROTKB|O14657 TOR1B "Torsin-1B" [Homo sapiens (taxid:9606)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 83/217 (38%), Positives = 124/217 (57%)

Query:    30 GIAIAAGIA---YFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELA 86
             G+AI A  A   Y S + I  +F       E C ++  +  N   L+  L++ + GQ LA
Sbjct:    31 GLAIGAASAITGYLSYNDIYCRF------AECCREE--RPLNASALKLDLEEKLFGQHLA 82

Query:    87 ISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT-SRFVH 145
                I  AL   F+N  +  K L +SLHG  GTGKN+V+  +  ++      KG  S FVH
Sbjct:    83 TEVIFKALTG-FRNNKNPKKPLTLSLHGWAGTGKNFVSQIVAENLHP----KGLKSNFVH 137

Query:   146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHH 205
              F S +HFP+E  + LY+ QL  WI  NV+AC  ++FIFDE+DK   G++D I PF+D++
Sbjct:   138 LFVSTLHFPHEQKIKLYQDQLQKWIRGNVSACANSVFIFDEMDKLHPGIIDAIKPFLDYY 197

Query:   206 AVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSGER 242
                + +S++  IF+FLSN+GG  I  T L+  ++G +
Sbjct:   198 EQVDGVSYRKAIFIFLSNAGGDLITKTALDFWRAGRK 234

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0071763 "nuclear membrane organization" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=TAS

GO:0051082 "unfolded protein binding" evidence=TAS

GO:0005788 "endoplasmic reticulum lumen" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IDA

UNIPROTKB|D4A7J2 Tor1b "Protein Tor1b" [Rattus norvegicus (taxid:10116)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 82/214 (38%), Positives = 124/214 (57%)

Query:    30 GIAIAAGIAYFSPSIINSKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELAISH 89
             GIAI A ++  +  +  S F   F   E C ++  +  N   L+  L++ + GQ LA   
Sbjct:    31 GIAIGA-VSALTGYLSYSDFYCRFT--ECCHEE--RPLNTSALKLDLEEKLFGQHLATEV 85

Query:    90 ICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT-SRFVHKFN 148
             I  AL   F+N  +  K L +SLHG  GTGKN+V+  +  +++     KG  S FVH F 
Sbjct:    86 ILKALTG-FRNNKNPKKPLTLSLHGWAGTGKNFVSQIVAENLYP----KGLKSNFVHLFV 140

Query:   149 SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY 208
             S +HFP+E  + L+  QL  WI  NV+AC  ++FIFDE+DK   G++D I PF+D++   
Sbjct:   141 STLHFPHEQKIKLFTDQLQKWIRGNVSACGSSVFIFDEMDKLHPGIIDAIKPFLDYYEQV 200

Query:   209 NQISFQNTIFLFLSNSGGTEIMNTFLELRKSGER 242
             + IS++  IF+FLSN+GG  I  T L+  ++G +
Sbjct:   201 DGISYRKAIFIFLSNAGGDLITKTTLDFWRAGRK 234

GO:0005524 "ATP binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

UNIPROTKB|F1MBM5 TOR1B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 72/172 (41%), Positives = 108/172 (62%)

Query:    72 LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 131
             L++ L++ + GQ LA   I  AL   F+N  +  K L +SLHG  GTGKN+V+  +  ++
Sbjct:     2 LKQDLEEKLFGQHLATEVILKALTG-FKNNKNPKKPLTLSLHGWAGTGKNFVSQIVAENL 60

Query:   132 FKRYKDKGT-SRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF 190
                   KG  S FVH F S +HFP+E H+ LY+ QL  WI  NV+AC  ++FIFDE+DK 
Sbjct:    61 HP----KGLKSNFVHLFVSTLHFPHEQHIKLYQDQLQRWIRGNVSACAGSVFIFDEMDKL 116

Query:   191 PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSGER 242
               G++D I PF+D++   + +S++  IF+FLSN+GG  I  T L+  ++G +
Sbjct:   117 HPGVIDAIKPFLDYYEQIDGVSYRKAIFIFLSNAGGDLITKTALDFWRAGRK 168

GO:0071763 "nuclear membrane organization" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q68G38 Dyt1 "Dystonia 1" [Rattus norvegicus (taxid:10116)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 74/186 (39%), Positives = 112/186 (60%)

Query:    57 EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 116
             E C  K  +S +   L++ L   + GQ LA   I  A+     N     K L +SLHG  
Sbjct:    49 ECCGQK--RSLSREALQKDLDNKLFGQHLAKRVILNAVSGFLSNPKPK-KPLTLSLHGWT 105

Query:   117 GTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA 176
             GTGKN+ +  I  +I   Y+    S +VH F + +HFP+ ++++LY+ QL  WI  NV+A
Sbjct:   106 GTGKNFASKIIAENI---YEGGLNSDYVHLFVATLHFPHASNITLYKDQLQMWIRGNVSA 162

Query:   177 CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL 236
             C R+IFIFDE+DK   GL+D I PF+D++ V +++S+Q  IF+FLSN+G   I +  L+ 
Sbjct:   163 CARSIFIFDEMDKMHAGLIDAIKPFLDYYDVVDEVSYQKAIFIFLSNAGAERITDVALDF 222

Query:   237 RKSGER 242
              +SG++
Sbjct:   223 WRSGKQ 228

GO:0005524 "ATP binding" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0071763 "nuclear membrane organization" evidence=IEA

UNIPROTKB|A5PK75 TOR1A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 74/186 (39%), Positives = 113/186 (60%)

Query:    57 EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 116
             E C+ K  +S +   L++ L   + GQ LA   I  AL     N     K L +SLHG  
Sbjct:    49 ECCSPK--RSLSREALQKDLDSKLFGQHLAKKVILNALSGFISNPKPK-KPLTLSLHGWT 105

Query:   117 GTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA 176
             GTGKN+V+  I  +I   Y+    S +VH F + +HFP+ ++++LY+ QL +WI  NV+A
Sbjct:   106 GTGKNFVSKIIAENI---YEGGLNSDYVHLFVATLHFPHISNITLYKDQLQSWIRGNVSA 162

Query:   177 CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL 236
             C R+IFIFDE+DK   GL+D I P++D++   + +S+Q  IF+FLSN+G   I +  L+ 
Sbjct:   163 CARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGVSYQKAIFIFLSNAGAERITDVALDF 222

Query:   237 RKSGER 242
              +SG++
Sbjct:   223 WRSGKQ 228

GO:0071763 "nuclear membrane organization" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ER41	TOR1B_MOUSE	No assigned EC number	0.3744	0.8461	0.6220	yes	N/A
O14657	TOR1B_HUMAN	No assigned EC number	0.3783	0.8299	0.6101	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	247
pfam06309	127	pfam06309, Torsin, Torsin	4e-36

>gnl|CDD|148114 pfam06309, Torsin, Torsin

 Score =  124 bits (312), Expect = 4e-36
 Identities = 49/129 (37%), Positives = 71/129 (55%), Gaps = 5/129 (3%)

Query: 56  GEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGL 115
            E C D  I S N   LE  L + + GQ L    +  ++K H++N     K L +S HG 
Sbjct: 4   AECCGDCRI-SFNYHGLERDLARRLFGQHLVKQLVVRSVKGHWENP-KPRKPLVLSFHGW 61

Query: 116 PGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT 175
            GTGKN+V + I  ++   Y+D   S +VH F +  HFP+  +V LY+++L N I   + 
Sbjct: 62  TGTGKNFVAEIIADNL---YRDGLRSPYVHHFVATNHFPHPKYVELYKVELKNQIRGTLR 118

Query: 176 ACDRAIFIF 184
           AC R+IFIF
Sbjct: 119 ACQRSIFIF 127

This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	247
KOG2170|consensus	344		100.0
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	99.97
COG2204	464	AtoC Response regulator containing CheY-like recei	99.95
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.95
COG3604	550	FhlA Transcriptional regulator containing GAF, AAA	99.9
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.89
KOG1051|consensus	898		99.89
CHL00095	821	clpC Clp protease ATP binding subunit	99.89
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.89
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.88
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.88
PRK10865	857	protein disaggregation chaperone; Provisional	99.87
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	99.86
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	99.84
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	99.79
PRK15424	538	propionate catabolism operon regulatory protein Pr	99.75
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	99.72
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	99.71
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	99.7
COG1221	403	PspF Transcriptional regulators containing an AAA-	99.68
COG3283	511	TyrR Transcriptional regulator of aromatic amino a	99.68
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	99.67
CHL00181	287	cbbX CbbX; Provisional	99.65
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.63
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	99.63
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	99.62
PRK11608	326	pspF phage shock protein operon transcriptional ac	99.62
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	99.62
PRK05022	509	anaerobic nitric oxide reductase transcription reg	99.61
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.6
COG3284	606	AcoR Transcriptional activator of acetoin/glycerol	99.6
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	99.6
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.59
KOG0989|consensus	346		99.59
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	99.58
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.57
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	99.56
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	99.55
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.55
KOG2004|consensus	906		99.55
PRK15115	444	response regulator GlrR; Provisional	99.51
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	99.5
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	99.5
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	99.49
PRK13531	498	regulatory ATPase RavA; Provisional	99.49
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	99.49
PLN03025	319	replication factor C subunit; Provisional	99.49
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	99.49
PRK07940	394	DNA polymerase III subunit delta'; Validated	99.47
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	99.46
PF00004	132	AAA: ATPase family associated with various cellula	99.46
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.46
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	99.45
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	99.45
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	99.44
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	99.44
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.43
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	99.43
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	99.43
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	99.43
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	99.41
COG4650	531	RtcR Sigma54-dependent transcription regulator con	99.41
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.41
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	99.41
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	99.41
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	99.41
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	99.4
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	99.4
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	99.39
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	99.39
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	99.38
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	99.38
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	99.38
PRK10365	441	transcriptional regulatory protein ZraR; Provision	99.38
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	99.37
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	99.37
CHL00195	489	ycf46 Ycf46; Provisional	99.37
KOG0991|consensus	333		99.36
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	99.36
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	99.36
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	99.36
PHA02244	383	ATPase-like protein	99.35
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	99.35
PRK12402	337	replication factor C small subunit 2; Reviewed	99.35
KOG0733|consensus	802		99.34
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	99.34
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	99.34
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	99.34
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	99.33
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	99.33
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	99.32
PHA02544	316	44 clamp loader, small subunit; Provisional	99.32
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	99.32
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	99.32
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.31
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	99.31
PRK00440	319	rfc replication factor C small subunit; Reviewed	99.31
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	99.3
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	99.3
PRK07399	314	DNA polymerase III subunit delta'; Validated	99.29
KOG0733|consensus	802		99.28
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.28
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	99.27
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	99.26
PRK13342	413	recombination factor protein RarA; Reviewed	99.26
PRK12377	248	putative replication protein; Provisional	99.26
PRK05564	313	DNA polymerase III subunit delta'; Validated	99.26
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.25
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	99.25
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.25
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	99.24
PRK09112	351	DNA polymerase III subunit delta'; Validated	99.24
COG0714	329	MoxR-like ATPases [General function prediction onl	99.24
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	99.24
PRK07471	365	DNA polymerase III subunit delta'; Validated	99.23
PRK08058	329	DNA polymerase III subunit delta'; Validated	99.23
KOG2028|consensus	554		99.23
KOG0745|consensus	564		99.22
KOG0738|consensus	491		99.22
PRK08116	268	hypothetical protein; Validated	99.22
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.21
KOG0736|consensus	953		99.21
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.21
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	99.21
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	99.2
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.2
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.19
PRK04195	482	replication factor C large subunit; Provisional	99.19
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.18
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.17
KOG0730|consensus	693		99.17
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	99.16
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	99.16
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	99.16
KOG0734|consensus	752		99.15
PRK05707	328	DNA polymerase III subunit delta'; Validated	99.14
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.13
CHL00176	638	ftsH cell division protein; Validated	99.13
PRK13341	725	recombination factor protein RarA/unknown domain f	99.11
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	99.1
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	99.1
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	99.1
KOG0744|consensus	423		99.09
PRK06871	325	DNA polymerase III subunit delta'; Validated	99.09
PRK07993	334	DNA polymerase III subunit delta'; Validated	99.08
PRK08769	319	DNA polymerase III subunit delta'; Validated	99.08
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.07
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.07
PRK08939	306	primosomal protein DnaI; Reviewed	99.05
KOG0731|consensus	774		99.04
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.04
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.04
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	99.03
PRK07952	244	DNA replication protein DnaC; Validated	99.03
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	99.03
PRK08181	269	transposase; Validated	99.02
KOG0727|consensus	408		99.02
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	99.01
COG1484	254	DnaC DNA replication protein [DNA replication, rec	99.0
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	99.0
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.99
PRK06526	254	transposase; Provisional	98.99
KOG0729|consensus	435		98.99
PRK06090	319	DNA polymerase III subunit delta'; Validated	98.99
PRK06835	329	DNA replication protein DnaC; Validated	98.98
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	98.98
PRK10865	857	protein disaggregation chaperone; Provisional	98.97
PRK05917	290	DNA polymerase III subunit delta'; Validated	98.97
PRK06893	229	DNA replication initiation factor; Validated	98.97
PRK06964	342	DNA polymerase III subunit delta'; Validated	98.96
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	98.96
KOG0651|consensus	388		98.95
PRK08084	235	DNA replication initiation factor; Provisional	98.94
PRK08727	233	hypothetical protein; Validated	98.93
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	98.93
KOG0739|consensus	439		98.92
PF07726	131	AAA_3: ATPase family associated with various cellu	98.92
smart00350	509	MCM minichromosome maintenance proteins.	98.92
smart00382	148	AAA ATPases associated with a variety of cellular	98.91
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	98.91
PRK06921	266	hypothetical protein; Provisional	98.91
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.9
CHL00095	821	clpC Clp protease ATP binding subunit	98.9
PRK04132	846	replication factor C small subunit; Provisional	98.89
CHL00206	2281	ycf2 Ycf2; Provisional	98.88
KOG0728|consensus	404		98.88
PRK05818	261	DNA polymerase III subunit delta'; Validated	98.88
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.84
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	98.83
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	98.83
KOG0735|consensus	952		98.82
PRK14087	450	dnaA chromosomal replication initiation protein; P	98.81
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	98.8
KOG0726|consensus	440		98.79
PTZ00112	1164	origin recognition complex 1 protein; Provisional	98.79
PRK08699	325	DNA polymerase III subunit delta'; Validated	98.78
PRK00149	450	dnaA chromosomal replication initiation protein; R	98.78
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	98.77
PRK07276	290	DNA polymerase III subunit delta'; Validated	98.77
PRK09183	259	transposase/IS protein; Provisional	98.76
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.76
KOG0652|consensus	424		98.76
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.75
KOG0990|consensus	360		98.72
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	98.72
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	98.72
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.7
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.69
COG0606	490	Predicted ATPase with chaperone activity [Posttran	98.69
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	98.69
PRK09862	506	putative ATP-dependent protease; Provisional	98.68
PRK05642	234	DNA replication initiation factor; Validated	98.67
PRK07132	299	DNA polymerase III subunit delta'; Validated	98.67
PRK14086	617	dnaA chromosomal replication initiation protein; P	98.64
KOG0732|consensus	1080		98.63
KOG0737|consensus	386		98.6
KOG0741|consensus	744		98.58
PRK12422	445	chromosomal replication initiation protein; Provis	98.58
KOG0730|consensus	693		98.57
PRK13765	637	ATP-dependent protease Lon; Provisional	98.56
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	98.54
KOG0743|consensus	457		98.52
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	98.52
PF13173	128	AAA_14: AAA domain	98.52
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	98.51
KOG1969|consensus	877		98.51
KOG2035|consensus	351		98.46
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	98.46
PRK06620	214	hypothetical protein; Validated	98.45
KOG0742|consensus	630		98.43
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	98.41
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	98.37
TIGR02688	449	conserved hypothetical protein TIGR02688. Members	98.32
KOG0740|consensus	428		98.32
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.31
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.27
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	98.27
PRK14974	336	cell division protein FtsY; Provisional	98.26
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.24
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.21
KOG0741|consensus	744		98.2
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	98.2
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.18
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	98.13
PRK09087	226	hypothetical protein; Validated	98.12
PRK10536	262	hypothetical protein; Provisional	98.12
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	98.1
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	98.09
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.03
PHA00729	226	NTP-binding motif containing protein	98.03
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	98.03
PRK06581	263	DNA polymerase III subunit delta'; Validated	98.02
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.01
COG0593	408	DnaA ATPase involved in DNA replication initiation	98.01
PRK04296	190	thymidine kinase; Provisional	97.98
PRK13406	584	bchD magnesium chelatase subunit D; Provisional	97.98
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.97
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	97.97
PF00493	331	MCM: MCM2/3/5 family This family extends the MCM d	97.95
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	97.95
KOG0478|consensus	804		97.93
KOG0735|consensus	952		97.93
PF05729	166	NACHT: NACHT domain	97.91
PRK15455	644	PrkA family serine protein kinase; Provisional	97.91
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.88
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.85
PHA02774	613	E1; Provisional	97.81
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.81
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	97.81
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.81
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.81
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	97.78
PF05272	198	VirE: Virulence-associated protein E; InterPro: IP	97.76
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.75
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.75
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	97.74
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.73
COG1485	367	Predicted ATPase [General function prediction only	97.73
PRK10867	433	signal recognition particle protein; Provisional	97.72
KOG0736|consensus	953		97.71
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	97.65
COG1241	682	MCM2 Predicted ATPase involved in replication cont	97.65
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.63
KOG0477|consensus	854		97.61
PRK10416	318	signal recognition particle-docking protein FtsY;	97.58
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	97.57
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.57
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	97.55
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.52
TIGR02768	744	TraA_Ti Ti-type conjugative transfer relaxase TraA	97.5
TIGR00959	428	ffh signal recognition particle protein. This mode	97.49
KOG0480|consensus	764		97.46
PF06048	286	DUF927: Domain of unknown function (DUF927); Inter	97.46
KOG1942|consensus	456		97.46
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	97.43
KOG1970|consensus	634		97.43
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	97.43
TIGR01448	720	recD_rel helicase, putative, RecD/TraA family. Thi	97.41
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	97.4
PF05609	465	LAP1C: Lamina-associated polypeptide 1C (LAP1C); I	97.39
TIGR00708	173	cobA cob(I)alamin adenosyltransferase. Alternate n	97.39
KOG2227|consensus	529		97.39
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.36
PRK13695	174	putative NTPase; Provisional	97.36
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	97.36
cd01128	249	rho_factor Transcription termination factor rho is	97.35
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	97.35
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.33
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	97.32
TIGR01447	586	recD exodeoxyribonuclease V, alpha subunit. This f	97.31
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.31
PRK06067	234	flagellar accessory protein FlaH; Validated	97.31
smart00487	201	DEXDc DEAD-like helicases superfamily.	97.28
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.27
KOG1514|consensus	767		97.27
PRK06696	223	uridine kinase; Validated	97.26
PRK13889	988	conjugal transfer relaxase TraA; Provisional	97.26
PRK00131	175	aroK shikimate kinase; Reviewed	97.25
PRK03846	198	adenylylsulfate kinase; Provisional	97.24
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.24
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.23
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	97.23
PRK10875	615	recD exonuclease V subunit alpha; Provisional	97.22
PF12780	268	AAA_8: P-loop containing dynein motor region D4; I	97.21
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	97.2
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	97.2
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.17
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.16
PRK05986	191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	97.16
PRK06762	166	hypothetical protein; Provisional	97.14
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.12
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.12
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.12
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	97.09
KOG2383|consensus	467		97.09
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.09
PRK08118	167	topology modulation protein; Reviewed	97.08
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.08
PRK05541	176	adenylylsulfate kinase; Provisional	97.08
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	97.07
PRK04220	301	2-phosphoglycerate kinase; Provisional	97.06
PRK08233	182	hypothetical protein; Provisional	97.05
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.03
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.03
PF13479	213	AAA_24: AAA domain	97.02
PF13245	76	AAA_19: Part of AAA domain	97.02
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.02
TIGR00767	415	rho transcription termination factor Rho. Members	97.0
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.99
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	96.98
PRK05439	311	pantothenate kinase; Provisional	96.98
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	96.98
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	96.97
COG4178	604	ABC-type uncharacterized transport system, permeas	96.97
PRK05480	209	uridine/cytidine kinase; Provisional	96.92
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	96.92
PRK03839	180	putative kinase; Provisional	96.91
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	96.9
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	96.88
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	96.88
PRK06547	172	hypothetical protein; Provisional	96.87
PLN02200	234	adenylate kinase family protein	96.87
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	96.87
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	96.87
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.86
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	96.86
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	96.86
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.86
PRK12608	380	transcription termination factor Rho; Provisional	96.85
KOG0479|consensus	818		96.83
KOG3347|consensus	176		96.83
PRK14527	191	adenylate kinase; Provisional	96.82
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.81
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	96.8
PRK09376	416	rho transcription termination factor Rho; Provisio	96.79
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.79
PRK14532	188	adenylate kinase; Provisional	96.78
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	96.77
PRK00625	173	shikimate kinase; Provisional	96.77
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	96.75
PRK13947	171	shikimate kinase; Provisional	96.75
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	96.74
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	96.73
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	96.72
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	96.72
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.71
PF00270	169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	96.71
PRK07667	193	uridine kinase; Provisional	96.7
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	96.7
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	96.7
PRK04040	188	adenylate kinase; Provisional	96.7
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	96.7
PRK12337	475	2-phosphoglycerate kinase; Provisional	96.69
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.68
PRK14738	206	gmk guanylate kinase; Provisional	96.67
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	96.67
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	96.65
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.64
PRK07261	171	topology modulation protein; Provisional	96.63
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	96.63
PTZ00088	229	adenylate kinase 1; Provisional	96.63
cd00983	325	recA RecA is a bacterial enzyme which has roles in	96.62
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.62
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.61
PF04851	184	ResIII: Type III restriction enzyme, res subunit;	96.61
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	96.6
PLN02674	244	adenylate kinase	96.59
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	96.59
PRK00889	175	adenylylsulfate kinase; Provisional	96.58
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	96.58
PRK12338	319	hypothetical protein; Provisional	96.57
TIGR00643	630	recG ATP-dependent DNA helicase RecG.	96.56
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	96.55
PRK13826	1102	Dtr system oriT relaxase; Provisional	96.54
PRK13833	323	conjugal transfer protein TrbB; Provisional	96.54
KOG0481|consensus	729		96.53
PRK14531	183	adenylate kinase; Provisional	96.53
PRK14530	215	adenylate kinase; Provisional	96.52
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.52
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.52
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	96.51
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	96.51
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	96.51
KOG0482|consensus	721		96.51
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.5
PHA02530	300	pseT polynucleotide kinase; Provisional	96.48
PRK13948	182	shikimate kinase; Provisional	96.48
PRK10646	153	ADP-binding protein; Provisional	96.47
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	96.46
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	96.45
PRK02496	184	adk adenylate kinase; Provisional	96.43
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.43
TIGR01587	358	cas3_core CRISPR-associated helicase Cas3. This mo	96.42
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	96.42
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	96.42
PRK13949	169	shikimate kinase; Provisional	96.42
PRK12339	197	2-phosphoglycerate kinase; Provisional	96.42
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.41
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	96.41
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	96.41
PRK06217	183	hypothetical protein; Validated	96.4
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	96.4
KOG2543|consensus	438		96.39
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.39
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	96.37
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	96.36
PRK13764	602	ATPase; Provisional	96.35
COG1061	442	SSL2 DNA or RNA helicases of superfamily II [Trans	96.35
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	96.35
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	96.33
PRK11823	446	DNA repair protein RadA; Provisional	96.32
PRK13946	184	shikimate kinase; Provisional	96.31
PLN02840	421	tRNA dimethylallyltransferase	96.31
COG0802	149	Predicted ATPase or kinase [General function predi	96.3
PRK05057	172	aroK shikimate kinase I; Reviewed	96.28
PRK14528	186	adenylate kinase; Provisional	96.28
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.27
PRK13975	196	thymidylate kinase; Provisional	96.27
PRK14737	186	gmk guanylate kinase; Provisional	96.27
COG1643	845	HrpA HrpA-like helicases [DNA replication, recombi	96.26
TIGR01967	1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	96.26
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	96.26
PTZ00424	401	helicase 45; Provisional	96.25
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	96.25
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	96.24
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	96.24
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	96.24
PRK04841	903	transcriptional regulator MalT; Provisional	96.23
PRK00300	205	gmk guanylate kinase; Provisional	96.23
PRK04182	180	cytidylate kinase; Provisional	96.23
PF05707	193	Zot: Zonular occludens toxin (Zot); InterPro: IPR0	96.22
PRK00279	215	adk adenylate kinase; Reviewed	96.22
TIGR00376	637	DNA helicase, putative. The gene product may repre	96.21
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	96.21
PRK04328	249	hypothetical protein; Provisional	96.2
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.19
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.18
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	96.18
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.18
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	96.17
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	96.17
KOG1051|consensus	898		96.17
KOG2680|consensus	454		96.17
PLN02459	261	probable adenylate kinase	96.16
PHA01747	425	putative ATP-dependent protease	96.15
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	96.14
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	96.12
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	96.12
PHA02624	647	large T antigen; Provisional	96.12
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.11
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	96.1
TIGR03819	340	heli_sec_ATPase helicase/secretion neighborhood AT	96.1
PRK15453	290	phosphoribulokinase; Provisional	96.07
PRK00698	205	tmk thymidylate kinase; Validated	96.0
PRK03731	171	aroL shikimate kinase II; Reviewed	95.99
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	95.98
PRK14526	211	adenylate kinase; Provisional	95.97
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	95.96
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	95.94
KOG0922|consensus	674		95.94

>KOG2170|consensus

Probab=100.00  E-value=3.2e-46  Score=322.29  Aligned_cols=194  Identities=39%  Similarity=0.682  Sum_probs=188.5

Q ss_pred             cceeeeeccCCCCCccccccccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHH
Q psy1694          47 SKFLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDF  126 (247)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~  126 (247)
                      ..+||.|.  +||.+.. +..|..+|++.|++.++||+.+++.++++++.++.++. |+||+++.|||+|||||+++++.
T Consensus        54 ~~~yC~f~--~cc~d~~-~~~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~-p~KPLvLSfHG~tGTGKN~Va~i  129 (344)
T KOG2170|consen   54 RAQYCLFA--ECCIDND-IRNDLDGLEKDLARALFGQHLAKQLVVNALKSHWANPN-PRKPLVLSFHGWTGTGKNYVAEI  129 (344)
T ss_pred             chhhhhHH--HHccccc-ccccchHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCC-CCCCeEEEecCCCCCchhHHHHH
Confidence            67789999  9999665 88889999999999999999999999999999999998 99999999999999999999999


Q ss_pred             HHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694         127 IVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA  206 (247)
Q Consensus       127 la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~  206 (247)
                      ||+++|.   .|.+|+||+.+.++++||++++++.|+.++.+++.+.++.|+++++||||+||||+++++.|.++||..+
T Consensus       130 iA~n~~~---~Gl~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp  206 (344)
T KOG2170|consen  130 IAENLYR---GGLRSPFVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYP  206 (344)
T ss_pred             HHHHHHh---ccccchhHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhcccc
Confidence            9999999   9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCceEEEEEeCCChHHHHHHHHHHHHcCcccccCC
Q psy1694         207 VYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSGERYITIH  247 (247)
Q Consensus       207 ~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~~~~g~~Re~~~  247 (247)
                      .++++|++|+||||.||.|+++|++.+++.+++|+.|||++
T Consensus       207 ~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~  247 (344)
T KOG2170|consen  207 QVSGVDFRKAIFIFLSNAGGSEIARIALENARNGKPREQLR  247 (344)
T ss_pred             ccccccccceEEEEEcCCcchHHHHHHHHHHHcCCCcccch
Confidence            99999999999999999999999999999999999999985

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=99.97  E-value=1.2e-30  Score=201.31  Aligned_cols=127  Identities=39%  Similarity=0.738  Sum_probs=123.0

Q ss_pred             eeeccCCCCCccccccccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694          51 NGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      |.+.  +||++++ ++.+.++|++.|+++|+||+.|.+.+.+++++++.++. |+|||++.||||||||||++++.||++
T Consensus         1 C~~~--eCC~~~~-i~~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~~-p~KpLVlSfHG~tGtGKn~v~~liA~~   76 (127)
T PF06309_consen    1 CRFY--ECCDDRW-IKYNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANPN-PRKPLVLSFHGWTGTGKNFVSRLIAEH   76 (127)
T ss_pred             CCcc--ccCCCcc-CCCCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC-CCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence            7888  9999998 89999999999999999999999999999999998886 999999999999999999999999999


Q ss_pred             hhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEE
Q psy1694         131 IFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIF  184 (247)
Q Consensus       131 l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlil  184 (247)
                      +|.   +|+.|+||+.+.+..+||++..+..|++++.+++.+.++.|+++++||
T Consensus        77 ly~---~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I~~~v~~C~rslFIF  127 (127)
T PF06309_consen   77 LYK---SGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWIRGNVSRCPRSLFIF  127 (127)
T ss_pred             HHh---cccCCCceeeecccccCCCchHHHHHHHHHHHHHHHHHHhCCcCeeeC
Confidence            999   999999999999999999999999999999999999999999999986

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=99.95  E-value=6e-30  Score=236.02  Aligned_cols=190  Identities=14%  Similarity=0.167  Sum_probs=152.7

Q ss_pred             hHHHHHhhhhccCccccc------cceeeeeccCCCCCccccccccHH-HHHH--HHHhhcCChHHHHHHHHHHHHHhhh
Q psy1694          29 SGIAIAAGIAYFSPSIIN------SKFLNGFGGGEACTDKFIQSSNVR-VLEE--QLKQHVHGQELAISHICGALKNHFQ   99 (247)
Q Consensus        29 ~~~~~av~a~~~~a~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~L~~--~L~~~l~Gq~~a~~~l~~~l~~~~~   99 (247)
                      +.+++||+|++.|||||+      +++.-.+.  ++++.+. ...+.+ ....  .....++|++++++.+.+.+.+.+.
T Consensus        86 g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~--ral~~~~-~~~e~~~~~~~~~~~~~~liG~S~am~~l~~~i~kvA~  162 (464)
T COG2204          86 GDIDTAVEALRLGAFDFLEKPFDLDRLLAIVE--RALELRE-LQRENRRSLKRAKSLGGELVGESPAMQQLRRLIAKVAP  162 (464)
T ss_pred             CCHHHHHHHHhcCcceeeeCCCCHHHHHHHHH--HHHHHhh-hhhhhhhhhhccccccCCceecCHHHHHHHHHHHHHhC
Confidence            689999999999999999      66666676  7776553 322232 1111  2445799999999999999999988


Q ss_pred             cccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec---------ccccCCCCChHHHHHHHHHHHH
Q psy1694         100 NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN---------SRIHFPNENHVSLYRLQLTNWI  170 (247)
Q Consensus       100 ~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~---------~~l~~~~~~~v~~~~~~l~~~~  170 (247)
                      ++.      .++++|++||||..+||+|++  ++   .+...|||.+||         +++|+++++.   |++....+.
T Consensus       163 s~a------~VLI~GESGtGKElvAr~IH~--~S---~R~~~PFVavNcaAip~~l~ESELFGhekGA---FTGA~~~r~  228 (464)
T COG2204         163 SDA------SVLITGESGTGKELVARAIHQ--AS---PRAKGPFIAVNCAAIPENLLESELFGHEKGA---FTGAITRRI  228 (464)
T ss_pred             CCC------CEEEECCCCCcHHHHHHHHHh--hC---cccCCCceeeecccCCHHHHHHHhhcccccC---cCCcccccC
Confidence            777      799999999999999999955  47   777899999999         5678888876   444434444


Q ss_pred             HHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc-------cccCCceEEEEEeCCChHHHHHHHHHHHHcCccc
Q psy1694         171 ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-------QISFQNTIFLFLSNSGGTEIMNTFLELRKSGERY  243 (247)
Q Consensus       171 ~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-------~~~~~~~ifI~tSN~g~~~i~~~~~~~~~~g~~R  243 (247)
                       +.++.+.+|++|||||+.||.++|.+|+++|+++.+..       .+|.|   +|.+|       ++++.+..++|+||
T Consensus       229 -G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR---iIaaT-------~~dL~~~v~~G~FR  297 (464)
T COG2204         229 -GRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVR---IIAAT-------NRDLEEEVAAGRFR  297 (464)
T ss_pred             -cceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeE---EEeec-------CcCHHHHHHcCCcH
Confidence             78899999999999999999999999999999987542       24555   66666       67899999999999


Q ss_pred             ccC
Q psy1694         244 ITI  246 (247)
Q Consensus       244 e~~  246 (247)
                      |||
T Consensus       298 eDL  300 (464)
T COG2204         298 EDL  300 (464)
T ss_pred             HHH
Confidence            997

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=4.6e-28  Score=234.06  Aligned_cols=159  Identities=21%  Similarity=0.358  Sum_probs=141.0

Q ss_pred             ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee
Q psy1694          67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH  145 (247)
Q Consensus        67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~  145 (247)
                      ..+..|++.|.++|+||+.|++.+.+++++...+=.+|++|. +++|.||||+|||.+|+.||+.||+   .  ..++++
T Consensus       480 ~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg---~--e~aliR  554 (786)
T COG0542         480 EKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFG---D--EQALIR  554 (786)
T ss_pred             HHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcC---C--Ccccee
Confidence            345678999999999999999999999998655444588998 4889999999999999999999987   2  357888


Q ss_pred             eecc---------cccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----cc
Q psy1694         146 KFNS---------RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----IS  212 (247)
Q Consensus       146 ~~~~---------~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~  212 (247)
                      ++||         .+.+++|+||+ |.+  .+.+++.+++.|++||+||||||.+|++++.|+++||+|+.+|+    ||
T Consensus       555 ~DMSEy~EkHsVSrLIGaPPGYVG-yee--GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~Vd  631 (786)
T COG0542         555 IDMSEYMEKHSVSRLIGAPPGYVG-YEE--GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVD  631 (786)
T ss_pred             echHHHHHHHHHHHHhCCCCCCce-ecc--ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEe
Confidence            8875         45789999999 776  78999999999999999999999999999999999999999987    69


Q ss_pred             CCceEEEEEeCCChHHHHHHH
Q psy1694         213 FQNTIFLFLSNSGGTEIMNTF  233 (247)
Q Consensus       213 ~~~~ifI~tSN~g~~~i~~~~  233 (247)
                      |+|+|+|+|||.|++.|.+..
T Consensus       632 FrNtiIImTSN~Gs~~i~~~~  652 (786)
T COG0542         632 FRNTIIIMTSNAGSEEILRDA  652 (786)
T ss_pred             cceeEEEEecccchHHHHhhc
Confidence            999999999999999988764

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]

Probab=99.90  E-value=4e-24  Score=195.97  Aligned_cols=143  Identities=14%  Similarity=0.239  Sum_probs=122.2

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec---------c
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN---------S  149 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~---------~  149 (247)
                      .++|+++|+..+.+.+.-.+.++.      .+|+.|++||||+.+|++|++  ++   .+...|||.+||         |
T Consensus       224 ~iIG~S~am~~ll~~i~~VA~Sd~------tVLi~GETGtGKElvAraIH~--~S---~R~~kPfV~~NCAAlPesLlES  292 (550)
T COG3604         224 GIIGRSPAMRQLLKEIEVVAKSDS------TVLIRGETGTGKELVARAIHQ--LS---PRRDKPFVKLNCAALPESLLES  292 (550)
T ss_pred             cceecCHHHHHHHHHHHHHhcCCC------eEEEecCCCccHHHHHHHHHh--hC---cccCCCceeeeccccchHHHHH
Confidence            589999999999999999887776      899999999999999999955  47   777899999999         6


Q ss_pred             cccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccc-------ccccCCceEEEEEe
Q psy1694         150 RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY-------NQISFQNTIFLFLS  222 (247)
Q Consensus       150 ~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~-------~~~~~~~~ifI~tS  222 (247)
                      ++|++.++.   |+++...+. +.++-+++|++|||||+.||..+|.||+++|+++++.       ..||.|  |+-.| 
T Consensus       293 ELFGHeKGA---FTGA~~~r~-GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVR--iIAAT-  365 (550)
T COG3604         293 ELFGHEKGA---FTGAINTRR-GRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVR--VIAAT-  365 (550)
T ss_pred             HHhcccccc---cccchhccC-cceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEE--EEecc-
Confidence            778888776   444444444 7788889999999999999999999999999999864       236777  55555 


Q ss_pred             CCChHHHHHHHHHHHHcCcccccC
Q psy1694         223 NSGGTEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       223 N~g~~~i~~~~~~~~~~g~~Re~~  246 (247)
                             |+++.+++++|+||+||
T Consensus       366 -------NRDL~~~V~~G~FRaDL  382 (550)
T COG3604         366 -------NRDLEEMVRDGEFRADL  382 (550)
T ss_pred             -------chhHHHHHHcCcchhhh
Confidence                   78999999999999997

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.89  E-value=6.4e-23  Score=204.00  Aligned_cols=159  Identities=22%  Similarity=0.301  Sum_probs=131.8

Q ss_pred             ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeE-EEEeecCCChHHHHHHHHHHHhhccccCCCCCccee
Q psy1694          67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA-ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH  145 (247)
Q Consensus        67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~-lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~  145 (247)
                      .....|++.|+++|+||+.|++.+.+++.....+-.+|++|+. ++|+||||||||++|+++|+.++.   .  ..+++.
T Consensus       555 ~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~---~--~~~~~~  629 (852)
T TIGR03345       555 EAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG---G--EQNLIT  629 (852)
T ss_pred             HHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC---C--CcceEE
Confidence            3456789999999999999999999999875433333779985 899999999999999999999986   3  246788


Q ss_pred             eeccc---------ccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----cc
Q psy1694         146 KFNSR---------IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----IS  212 (247)
Q Consensus       146 ~~~~~---------l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~  212 (247)
                      +++++         +.++++++++ |.+  .+.+.+.+++++++||+|||+|++++.+++.|+++++++.++++    +|
T Consensus       630 ~dmse~~~~~~~~~l~g~~~gyvg-~~~--~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd  706 (852)
T TIGR03345       630 INMSEFQEAHTVSRLKGSPPGYVG-YGE--GGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREID  706 (852)
T ss_pred             EeHHHhhhhhhhccccCCCCCccc-ccc--cchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEe
Confidence            88754         3456677776 432  35667788899999999999999999999999999999988764    69


Q ss_pred             CCceEEEEEeCCChHHHHHHH
Q psy1694         213 FQNTIFLFLSNSGGTEIMNTF  233 (247)
Q Consensus       213 ~~~~ifI~tSN~g~~~i~~~~  233 (247)
                      ++|++||+|||.|.+.+.+..
T Consensus       707 ~~n~iiI~TSNlg~~~~~~~~  727 (852)
T TIGR03345       707 FKNTVILLTSNAGSDLIMALC  727 (852)
T ss_pred             ccccEEEEeCCCchHHHHHhc
Confidence            999999999999999887643

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>KOG1051|consensus

Probab=99.89  E-value=1.2e-22  Score=198.94  Aligned_cols=158  Identities=21%  Similarity=0.343  Sum_probs=136.4

Q ss_pred             cHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee
Q psy1694          68 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF  147 (247)
Q Consensus        68 ~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~  147 (247)
                      ++..|++.|.++|+||+.|+..+.+++.+...+-.++..+.+++|.||+|+|||.+|+++|+.+|+     ....|++++
T Consensus       552 ~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fg-----se~~~IriD  626 (898)
T KOG1051|consen  552 RLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFG-----SEENFIRLD  626 (898)
T ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcC-----CccceEEec
Confidence            456789999999999999999999999876544332423456999999999999999999999987     246799999


Q ss_pred             ccc------ccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccCCceE
Q psy1694         148 NSR------IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTI  217 (247)
Q Consensus       148 ~~~------l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~~~~i  217 (247)
                      +++      +.+.++++++ |+.  .+.+.+.++++|++||+|||||+.++.+++.|++++|+|+++|+    +|++|+|
T Consensus       627 mse~~evskligsp~gyvG-~e~--gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I  703 (898)
T KOG1051|consen  627 MSEFQEVSKLIGSPPGYVG-KEE--GGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAI  703 (898)
T ss_pred             hhhhhhhhhccCCCccccc-chh--HHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceE
Confidence            874      5677888877 554  57899999999999999999999999999999999999999987    6999999


Q ss_pred             EEEEeCCChHHHHHHH
Q psy1694         218 FLFLSNSGGTEIMNTF  233 (247)
Q Consensus       218 fI~tSN~g~~~i~~~~  233 (247)
                      ||+|||.|.+.|....
T Consensus       704 ~IMTsn~~~~~i~~~~  719 (898)
T KOG1051|consen  704 FIMTSNVGSSAIANDA  719 (898)
T ss_pred             EEEecccchHhhhccc
Confidence            9999999999877664

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.89  E-value=9.1e-23  Score=202.96  Aligned_cols=155  Identities=21%  Similarity=0.329  Sum_probs=127.7

Q ss_pred             cHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeE-EEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694          68 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA-ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK  146 (247)
Q Consensus        68 ~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~-lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~  146 (247)
                      ....|++.|.++|+||+.|++.+.+++.....+-.++++|.. ++|+||||||||++|+.+|+.+|+   .  ..+++++
T Consensus       499 ~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~---~--~~~~~~~  573 (821)
T CHL00095        499 KLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG---S--EDAMIRL  573 (821)
T ss_pred             HHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC---C--ccceEEE
Confidence            356789999999999999999999999865333223778875 889999999999999999999987   3  2468888


Q ss_pred             ecccc---------cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccC
Q psy1694         147 FNSRI---------HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF  213 (247)
Q Consensus       147 ~~~~l---------~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~  213 (247)
                      +++++         .++++++++ |.+  .+.+.+.+..+|++||+|||+|++++++++.|+++||+++++++    +|+
T Consensus       574 d~s~~~~~~~~~~l~g~~~gyvg-~~~--~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~  650 (821)
T CHL00095        574 DMSEYMEKHTVSKLIGSPPGYVG-YNE--GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDF  650 (821)
T ss_pred             EchhccccccHHHhcCCCCcccC-cCc--cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEec
Confidence            87654         234456655 433  34567788899999999999999999999999999999988764    699


Q ss_pred             CceEEEEEeCCChHHHH
Q psy1694         214 QNTIFLFLSNSGGTEIM  230 (247)
Q Consensus       214 ~~~ifI~tSN~g~~~i~  230 (247)
                      +|++||+|||.|++.|.
T Consensus       651 ~~~i~I~Tsn~g~~~i~  667 (821)
T CHL00095        651 KNTLIIMTSNLGSKVIE  667 (821)
T ss_pred             CceEEEEeCCcchHHHH
Confidence            99999999999998776

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.89  E-value=6.2e-23  Score=201.12  Aligned_cols=153  Identities=20%  Similarity=0.301  Sum_probs=124.6

Q ss_pred             cHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694          68 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK  146 (247)
Q Consensus        68 ~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~  146 (247)
                      ....|++.|+++|+||+.|++.+.+++.....+-.++++|. +++|+||||||||++|+.+|+.+.        .+++.+
T Consensus       448 ~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--------~~~i~i  519 (758)
T PRK11034        448 TLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--------IELLRF  519 (758)
T ss_pred             HHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--------CCcEEe
Confidence            45678899999999999999999999987644433366886 589999999999999999999863        378888


Q ss_pred             ecccc---------cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccC
Q psy1694         147 FNSRI---------HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF  213 (247)
Q Consensus       147 ~~~~l---------~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~  213 (247)
                      +|+++         .+.++++++ |..  .+.+.+.+.+++++||+|||+|++++++++.|+++||++.+++.    +|+
T Consensus       520 d~se~~~~~~~~~LiG~~~gyvg-~~~--~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~  596 (758)
T PRK11034        520 DMSEYMERHTVSRLIGAPPGYVG-FDQ--GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADF  596 (758)
T ss_pred             echhhcccccHHHHcCCCCCccc-ccc--cchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecC
Confidence            77553         455556655 322  34566777888999999999999999999999999999987654    699


Q ss_pred             CceEEEEEeCCChHHHHH
Q psy1694         214 QNTIFLFLSNSGGTEIMN  231 (247)
Q Consensus       214 ~~~ifI~tSN~g~~~i~~  231 (247)
                      +|++||+|||.|.+.+.+
T Consensus       597 rn~iiI~TsN~g~~~~~~  614 (758)
T PRK11034        597 RNVVLVMTTNAGVRETER  614 (758)
T ss_pred             CCcEEEEeCCcCHHHHhh
Confidence            999999999999877654

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.88  E-value=2.4e-22  Score=200.56  Aligned_cols=156  Identities=21%  Similarity=0.329  Sum_probs=128.0

Q ss_pred             cHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694          68 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK  146 (247)
Q Consensus        68 ~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~  146 (247)
                      .+..|++.|.+.++||+.|++.+.+++.+...+-.+|++|. +++|.||||||||++|+.||+.++.   .  ..+++.+
T Consensus       555 ~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~---~--~~~~i~~  629 (852)
T TIGR03346       555 KLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD---D--EDAMVRI  629 (852)
T ss_pred             HHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC---C--CCcEEEE
Confidence            45678889999999999999999999987654333366885 5889999999999999999999876   3  3578888


Q ss_pred             ecccc---------cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccC
Q psy1694         147 FNSRI---------HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF  213 (247)
Q Consensus       147 ~~~~l---------~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~  213 (247)
                      +|+++         .++++++++ |.+  .+.+.+.+...+++||+|||||++++++++.|+++|+++.++++    +|+
T Consensus       630 d~s~~~~~~~~~~l~g~~~g~~g-~~~--~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~  706 (852)
T TIGR03346       630 DMSEYMEKHSVARLIGAPPGYVG-YEE--GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDF  706 (852)
T ss_pred             echhhcccchHHHhcCCCCCccC-ccc--ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEec
Confidence            87654         344556555 433  35666778889999999999999999999999999999988775    699


Q ss_pred             CceEEEEEeCCChHHHHH
Q psy1694         214 QNTIFLFLSNSGGTEIMN  231 (247)
Q Consensus       214 ~~~ifI~tSN~g~~~i~~  231 (247)
                      +|+|||+|||.|.+.+.+
T Consensus       707 rn~iiI~TSn~g~~~~~~  724 (852)
T TIGR03346       707 RNTVIIMTSNLGSQFIQE  724 (852)
T ss_pred             CCcEEEEeCCcchHhHhh
Confidence            999999999999887665

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.88  E-value=2.4e-22  Score=197.78  Aligned_cols=153  Identities=18%  Similarity=0.322  Sum_probs=124.8

Q ss_pred             cHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694          68 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK  146 (247)
Q Consensus        68 ~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~  146 (247)
                      .+..+++.|+++++||+.+++.+.+++......-.++++|. +++|+||||||||++|+.+|+.+..        +++.+
T Consensus       444 ~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~--------~~~~~  515 (731)
T TIGR02639       444 KLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV--------HLERF  515 (731)
T ss_pred             HHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC--------CeEEE
Confidence            45578899999999999999999999986433322367887 4899999999999999999998643        67777


Q ss_pred             ecccc---------cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccC
Q psy1694         147 FNSRI---------HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF  213 (247)
Q Consensus       147 ~~~~l---------~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~  213 (247)
                      +++++         .++++++++ |..  .+.+.+.++..+++||+|||+|++++++++.|+++||++.++++    +|+
T Consensus       516 d~se~~~~~~~~~lig~~~gyvg-~~~--~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~  592 (731)
T TIGR02639       516 DMSEYMEKHTVSRLIGAPPGYVG-FEQ--GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADF  592 (731)
T ss_pred             eCchhhhcccHHHHhcCCCCCcc-cch--hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCC
Confidence            77654         344556655 332  35566778889999999999999999999999999999988764    699


Q ss_pred             CceEEEEEeCCChHHHHH
Q psy1694         214 QNTIFLFLSNSGGTEIMN  231 (247)
Q Consensus       214 ~~~ifI~tSN~g~~~i~~  231 (247)
                      +|++||+|||.|.+.+.+
T Consensus       593 ~~~iii~Tsn~g~~~~~~  610 (731)
T TIGR02639       593 RNVILIMTSNAGASEMSK  610 (731)
T ss_pred             CCCEEEECCCcchhhhhh
Confidence            999999999999887754

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.87  E-value=1.6e-21  Score=194.47  Aligned_cols=156  Identities=19%  Similarity=0.328  Sum_probs=126.1

Q ss_pred             cHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694          68 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK  146 (247)
Q Consensus        68 ~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~  146 (247)
                      .+..|++.|.++++||+.+++.+.+++.....+-.+|++|. +++|+||||||||++|++||+.++.   .  ..+++.+
T Consensus       558 ~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~---~--~~~~i~i  632 (857)
T PRK10865        558 KLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD---S--DDAMVRI  632 (857)
T ss_pred             HHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc---C--CCcEEEE
Confidence            45678999999999999999999999987643333366886 5899999999999999999999875   3  2478888


Q ss_pred             ecccc---------cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccC
Q psy1694         147 FNSRI---------HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF  213 (247)
Q Consensus       147 ~~~~l---------~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~  213 (247)
                      +|+++         .+.++++++ |..  .+.+.+.+...+++||+|||++++++.+++.|+++|+++.++++    +|+
T Consensus       633 d~se~~~~~~~~~LiG~~pgy~g-~~~--~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~  709 (857)
T PRK10865        633 DMSEFMEKHSVSRLVGAPPGYVG-YEE--GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDF  709 (857)
T ss_pred             EhHHhhhhhhHHHHhCCCCcccc-cch--hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEee
Confidence            87554         344455544 322  34566777888999999999999999999999999999988764    699


Q ss_pred             CceEEEEEeCCChHHHHH
Q psy1694         214 QNTIFLFLSNSGGTEIMN  231 (247)
Q Consensus       214 ~~~ifI~tSN~g~~~i~~  231 (247)
                      +|++||+|||.|++.+.+
T Consensus       710 rn~iiI~TSN~g~~~~~~  727 (857)
T PRK10865        710 RNTVVIMTSNLGSDLIQE  727 (857)
T ss_pred             cccEEEEeCCcchHHHHH
Confidence            999999999999877653

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=99.86  E-value=1.6e-22  Score=187.39  Aligned_cols=144  Identities=11%  Similarity=0.165  Sum_probs=119.4

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec---------c
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN---------S  149 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~---------~  149 (247)
                      .++|.++++..+.+.+++.+.++.      .+|+.|++||||+..|++|++  .+   ++...|||.+||         |
T Consensus       246 ~Iig~S~~m~~~~~~akr~A~tds------tVLi~GESGTGKElfA~~IH~--~S---~R~~~PFIaiNCaAiPe~LlES  314 (560)
T COG3829         246 DIIGESPAMLRVLELAKRIAKTDS------TVLILGESGTGKELFARAIHN--LS---PRANGPFIAINCAAIPETLLES  314 (560)
T ss_pred             hhccCCHHHHHHHHHHHhhcCCCC------cEEEecCCCccHHHHHHHHHh--cC---cccCCCeEEEecccCCHHHHHH
Confidence            599999999999999999887776      899999999999999999944  47   778899999999         5


Q ss_pred             cccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc-------cccCCceEEEEEe
Q psy1694         150 RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-------QISFQNTIFLFLS  222 (247)
Q Consensus       150 ~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-------~~~~~~~ifI~tS  222 (247)
                      ++|+-.+++   |+++..+--.+.++.+.+|++|||||..||..+|.+||++|+++++..       .+|+|   +|.+|
T Consensus       315 ELFGye~GA---FTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVR---IIAAT  388 (560)
T COG3829         315 ELFGYEKGA---FTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVR---IIAAT  388 (560)
T ss_pred             HHhCcCCcc---ccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEE---EEecc
Confidence            667766665   444333323467788899999999999999999999999999987542       25766   55554


Q ss_pred             CCChHHHHHHHHHHHHcCcccccC
Q psy1694         223 NSGGTEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       223 N~g~~~i~~~~~~~~~~g~~Re~~  246 (247)
                             |+.+.+++++|+|||||
T Consensus       389 -------N~nL~~~i~~G~FReDL  405 (560)
T COG3829         389 -------NRNLEKMIAEGTFREDL  405 (560)
T ss_pred             -------CcCHHHHHhcCcchhhh
Confidence                   67899999999999997

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=99.84  E-value=1.9e-20  Score=153.34  Aligned_cols=145  Identities=12%  Similarity=0.153  Sum_probs=103.7

Q ss_pred             cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc--------
Q psy1694          80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI--------  151 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l--------  151 (247)
                      ++|.+.+++.+.+.+++.+..+.      .++++|++||||+.+|++|++  .+   .+...||+.++|+.+        
T Consensus         1 liG~s~~m~~~~~~~~~~a~~~~------pVlI~GE~GtGK~~lA~~IH~--~s---~r~~~pfi~vnc~~~~~~~~e~~   69 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRAASSDL------PVLITGETGTGKELLARAIHN--NS---PRKNGPFISVNCAALPEELLESE   69 (168)
T ss_dssp             SS--SHHHHHHHHHHHHHTTSTS-------EEEECSTTSSHHHHHHHHHH--CS---TTTTS-EEEEETTTS-HHHHHHH
T ss_pred             CEeCCHHHHHHHHHHHHHhCCCC------CEEEEcCCCCcHHHHHHHHHH--hh---hcccCCeEEEehhhhhcchhhhh
Confidence            58999999999999998876655      789999999999999999955  45   566789999999765        


Q ss_pred             -cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccCCceEEEEEeCCCh
Q psy1694         152 -HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSGG  226 (247)
Q Consensus       152 -~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~~~~ifI~tSN~g~  226 (247)
                       ++...+.+.   +. ...-.+.+..+.++++|||||+.||+.+|.+|+++|+++.+..-    .-..++-+|++||   
T Consensus        70 LFG~~~~~~~---~~-~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~---  142 (168)
T PF00158_consen   70 LFGHEKGAFT---GA-RSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTS---  142 (168)
T ss_dssp             HHEBCSSSST---TT-SSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEES---
T ss_pred             hhcccccccc---cc-ccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecC---
Confidence             222211100   00 00012678899999999999999999999999999999875421    1123666888885   


Q ss_pred             HHHHHHHHHHHHcCcccccC
Q psy1694         227 TEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       227 ~~i~~~~~~~~~~g~~Re~~  246 (247)
                          +.+.+++++|+||+||
T Consensus       143 ----~~l~~~v~~g~fr~dL  158 (168)
T PF00158_consen  143 ----KDLEELVEQGRFREDL  158 (168)
T ss_dssp             ----S-HHHHHHTTSS-HHH
T ss_pred             ----cCHHHHHHcCCChHHH
Confidence                5778899999999986

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.79  E-value=8.2e-20  Score=149.96  Aligned_cols=115  Identities=23%  Similarity=0.341  Sum_probs=87.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh-ccccCCCCCcceeeecccccCCC--CChHHHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF-KRYKDKGTSRFVHKFNSRIHFPN--ENHVSLYRLQLTNWIISNVTACDRAIFIFD  185 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~-~~~~~g~~~~~v~~~~~~l~~~~--~~~v~~~~~~l~~~~~~~l~~~~~~vlilD  185 (247)
                      +++|.||+|||||.+|+++|+.++ +     ...+++.++++++....  ...+..    +.....+.+...+++||+||
T Consensus         5 ~~ll~GpsGvGKT~la~~la~~l~~~-----~~~~~~~~d~s~~~~~~~~~~~~~~----l~~~~~~~v~~~~~gVVllD   75 (171)
T PF07724_consen    5 NFLLAGPSGVGKTELAKALAELLFVG-----SERPLIRIDMSEYSEGDDVESSVSK----LLGSPPGYVGAEEGGVVLLD   75 (171)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHT-S-----SCCEEEEEEGGGHCSHHHCSCHCHH----HHHHTTCHHHHHHHTEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhccC-----CccchHHHhhhcccccchHHhhhhh----hhhcccceeeccchhhhhhH
Confidence            589999999999999999999987 4     24689999998874410  111111    11111122233334699999


Q ss_pred             CCCCCCh-----------hhHHHHHhhcccCccccc----ccCCceEEEEEeCCChHHHHHH
Q psy1694         186 EVDKFPK-----------GLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSGGTEIMNT  232 (247)
Q Consensus       186 Eiek~~~-----------~~~~~Ll~~Le~~~~~~~----~~~~~~ifI~tSN~g~~~i~~~  232 (247)
                      ||||+++           ++|+.|+++||++.+.++    +|++|++||+|||.++..++..
T Consensus        76 EidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~  137 (171)
T PF07724_consen   76 EIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDA  137 (171)
T ss_dssp             TGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHC
T ss_pred             HHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhh
Confidence            9999999           999999999999987643    6999999999999999988873

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=99.75  E-value=4.9e-19  Score=168.00  Aligned_cols=196  Identities=14%  Similarity=0.108  Sum_probs=129.5

Q ss_pred             hHHHHHhhhhccCccccc-cceeeeeccCCCCCccccccccHHH---HHHHH-----HhhcCChHHHHHHHHHHHHHhhh
Q psy1694          29 SGIAIAAGIAYFSPSIIN-SKFLNGFGGGEACTDKFIQSSNVRV---LEEQL-----KQHVHGQELAISHICGALKNHFQ   99 (247)
Q Consensus        29 ~~~~~av~a~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---L~~~L-----~~~l~Gq~~a~~~l~~~l~~~~~   99 (247)
                      .....|+++...|+++|- +.+...+.  ++.+... ...+.+.   .++.+     -..++|++++++.+.+.+..+..
T Consensus       164 ~~~~~A~~~g~~g~~~~s~e~i~~a~~--~A~~~~~-~~~~~~~~~~~~~~~~~~~~f~~iiG~S~~m~~~~~~i~~~A~  240 (538)
T PRK15424        164 LITDLAEEAGMTGIFIYSAATVRQAFE--DALDMTR-MTLRHNTHYATRNALRTRYVLGDLLGQSPQMEQVRQTILLYAR  240 (538)
T ss_pred             hHHHHHHHhCCceEEecCHHHHHHHHH--HHHHHHH-HHhhhhhccchhhhhccccchhheeeCCHHHHHHHHHHHHHhC
Confidence            346789999999998886 44444444  4432111 1000000   01111     12399999999999999998877


Q ss_pred             cccCCCCCeEEEEeecCCChHHHHHHHHHHHhh------ccccCCCCCcceeeecccc---------cCCCCChHHHHHH
Q psy1694         100 NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF------KRYKDKGTSRFVHKFNSRI---------HFPNENHVSLYRL  164 (247)
Q Consensus       100 ~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~------~~~~~g~~~~~v~~~~~~l---------~~~~~~~v~~~~~  164 (247)
                      .+.      .+++.|++||||+++|++|++.+.      +   .+...||+.+||+.+         ++...+.   |.+
T Consensus       241 s~~------pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S---~r~~~pfv~inCaal~e~lleseLFG~~~ga---ftg  308 (538)
T PRK15424        241 SSA------AVLIQGETGTGKELAAQAIHREYFARHDARQ---GKKSHPFVAVNCGAIAESLLEAELFGYEEGA---FTG  308 (538)
T ss_pred             CCC------cEEEECCCCCCHHHHHHHHHHhhcccccccC---ccCCCCeEEeecccCChhhHHHHhcCCcccc---ccC
Confidence            665      789999999999999999966532      4   445679999999765         2222211   111


Q ss_pred             HHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc--cc--cCCceEEEEEeCCChHHHHHHHHHHHHcC
Q psy1694         165 QLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--QI--SFQNTIFLFLSNSGGTEIMNTFLELRKSG  240 (247)
Q Consensus       165 ~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~--~~--~~~~~ifI~tSN~g~~~i~~~~~~~~~~g  240 (247)
                      .....-.+.++.+.++++|||||+.||+.+|.+|+++|+++.+..  +.  ---++-+|++||       +.+.+..++|
T Consensus       309 a~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~-------~~L~~~v~~g  381 (538)
T PRK15424        309 SRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATH-------CDLEEDVRQG  381 (538)
T ss_pred             ccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecC-------CCHHHHHhcc
Confidence            100111245677889999999999999999999999999976532  10  001234777764       4555778889


Q ss_pred             cccccC
Q psy1694         241 ERYITI  246 (247)
Q Consensus       241 ~~Re~~  246 (247)
                      +||+||
T Consensus       382 ~Fr~dL  387 (538)
T PRK15424        382 RFRRDL  387 (538)
T ss_pred             cchHHH
Confidence            999875

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=99.72  E-value=8.3e-17  Score=148.20  Aligned_cols=147  Identities=22%  Similarity=0.300  Sum_probs=104.2

Q ss_pred             ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcc----cCCC------CCeEEEEeecCCChHHHHHHHHHHHhhcccc
Q psy1694          67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNR----YHNT------KALAISLHGLPGTGKNYVTDFIVSSIFKRYK  136 (247)
Q Consensus        67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~----~~~~------kpl~lll~G~~GtGKt~~A~~la~~l~~~~~  136 (247)
                      +..+.+++.|++.++||+.|++.+..++.++...-    ..+.      .+.+++|.||||||||++|+.+|+.+.    
T Consensus        66 ~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~----  141 (413)
T TIGR00382        66 PTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN----  141 (413)
T ss_pred             CCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC----
Confidence            34678999999999999999999998886532211    1011      124699999999999999999987742    


Q ss_pred             CCCCCcceeeecccccCCCCChHHHH-HHHHHHHHH---HHHHhCCCeEEEEeCCCCCCh--------------hhHHHH
Q psy1694         137 DKGTSRFVHKFNSRIHFPNENHVSLY-RLQLTNWII---SNVTACDRAIFIFDEVDKFPK--------------GLLDVI  198 (247)
Q Consensus       137 ~g~~~~~v~~~~~~l~~~~~~~v~~~-~~~l~~~~~---~~l~~~~~~vlilDEiek~~~--------------~~~~~L  198 (247)
                          .||+.++++.+  ..+++++.- ...+...+.   ..+..+..++|+|||+|++++              ++|+.|
T Consensus       142 ----~pf~~~da~~L--~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~L  215 (413)
T TIGR00382       142 ----VPFAIADATTL--TEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQAL  215 (413)
T ss_pred             ----CCeEEechhhc--cccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHH
Confidence                37877777665  233444321 111111111   223455668999999999987              699999


Q ss_pred             HhhcccCcccc-------cccCCceEEEEEeCC
Q psy1694         199 IPFIDHHAVYN-------QISFQNTIFLFLSNS  224 (247)
Q Consensus       199 l~~Le~~~~~~-------~~~~~~~ifI~tSN~  224 (247)
                      |++|| +..++       .++++++++|+|||.
T Consensus       216 L~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNi  247 (413)
T TIGR00382       216 LKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNI  247 (413)
T ss_pred             HHHhh-ccceecccCCCccccCCCeEEEEcCCc
Confidence            99996 55542       358899999999999

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=99.71  E-value=2e-17  Score=149.02  Aligned_cols=145  Identities=10%  Similarity=0.074  Sum_probs=106.2

Q ss_pred             cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc-------
Q psy1694          80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH-------  152 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~-------  152 (247)
                      ++|++++++.+.+.+.+.+..+.      .++|.|++||||+++|++|+.  .+   .+...||+.++|+.+.       
T Consensus         1 liG~S~~m~~~~~~~~~~a~~~~------pVLI~GE~GtGK~~lAr~iH~--~s---~r~~~pfv~vnc~~~~~~~l~~~   69 (329)
T TIGR02974         1 LIGESNAFLEVLEQVSRLAPLDR------PVLIIGERGTGKELIAARLHY--LS---KRWQGPLVKLNCAALSENLLDSE   69 (329)
T ss_pred             CCcCCHHHHHHHHHHHHHhCCCC------CEEEECCCCChHHHHHHHHHH--hc---CccCCCeEEEeCCCCChHHHHHH
Confidence            58999999999999998876554      689999999999999999954  45   5566899999997642       


Q ss_pred             --CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc--c--ccCCceEEEEEeCCCh
Q psy1694         153 --FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--Q--ISFQNTIFLFLSNSGG  226 (247)
Q Consensus       153 --~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~--~--~~~~~~ifI~tSN~g~  226 (247)
                        +...+.   |.+... .-.+.+..+.++++|||||+.||+.+|.+|+++|+++.+..  +  .-..++.+|++|    
T Consensus        70 lfG~~~g~---~~ga~~-~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at----  141 (329)
T TIGR02974        70 LFGHEAGA---FTGAQK-RHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCAT----  141 (329)
T ss_pred             Hhcccccc---ccCccc-ccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEec----
Confidence              111111   111000 11244677888999999999999999999999999876432  1  111345678887    


Q ss_pred             HHHHHHHHHHHHcCcccccC
Q psy1694         227 TEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       227 ~~i~~~~~~~~~~g~~Re~~  246 (247)
                         +..+.++.++|.+|+||
T Consensus       142 ---~~~l~~~~~~g~fr~dL  158 (329)
T TIGR02974       142 ---NADLPALAAEGRFRADL  158 (329)
T ss_pred             ---hhhHHHHhhcCchHHHH
Confidence               45667778888888875

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=99.70  E-value=3.5e-16  Score=144.46  Aligned_cols=148  Identities=20%  Similarity=0.243  Sum_probs=100.9

Q ss_pred             ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhh---ccc----CCC-CCeEEEEeecCCChHHHHHHHHHHHhhccccCC
Q psy1694          67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQ---NRY----HNT-KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK  138 (247)
Q Consensus        67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~---~~~----~~~-kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g  138 (247)
                      +..+.+.+.|++.++||+.|++.+..++.++..   ...    +.. ....++|+||||||||++|+.+|+.+.      
T Consensus        60 ~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~------  133 (412)
T PRK05342         60 PTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD------  133 (412)
T ss_pred             CCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC------
Confidence            457889999999999999999999888754321   110    011 123689999999999999999988752      


Q ss_pred             CCCcceeeecccccCCCCChHHHHHH-HHHHHHH---HHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHh
Q psy1694         139 GTSRFVHKFNSRIHFPNENHVSLYRL-QLTNWII---SNVTACDRAIFIFDEVDKFPK--------------GLLDVIIP  200 (247)
Q Consensus       139 ~~~~~v~~~~~~l~~~~~~~v~~~~~-~l~~~~~---~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~  200 (247)
                        .||+.++++.+.  ..++++.-.+ .+...+.   ..+..+.++||||||||++++              ++|+.|++
T Consensus       134 --~pf~~id~~~l~--~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~  209 (412)
T PRK05342        134 --VPFAIADATTLT--EAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLK  209 (412)
T ss_pred             --CCceecchhhcc--cCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHH
Confidence              489988887652  3344432111 1111111   124556789999999999975              38999999


Q ss_pred             hcccCcc--c----ccccCCceEEEEEeCC
Q psy1694         201 FIDHHAV--Y----NQISFQNTIFLFLSNS  224 (247)
Q Consensus       201 ~Le~~~~--~----~~~~~~~~ifI~tSN~  224 (247)
                      +||....  .    ...++.+.+.|.|||.
T Consensus       210 ~Leg~~~~v~~~gg~~~~~~~~~~i~t~ni  239 (412)
T PRK05342        210 ILEGTVASVPPQGGRKHPQQEFIQVDTTNI  239 (412)
T ss_pred             HHhcCeEEeCCCCCcCcCCCCeEEeccCCc
Confidence            9985432  1    1235567777777776

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=99.68  E-value=2.2e-17  Score=150.54  Aligned_cols=122  Identities=11%  Similarity=0.197  Sum_probs=96.2

Q ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCC-CCCcceeeeccc
Q psy1694          72 LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-GTSRFVHKFNSR  150 (247)
Q Consensus        72 L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g-~~~~~v~~~~~~  150 (247)
                      +.......++|.+...+.++++++++..+..      .+++.|+|||||+++|+.|+  ..+   .+ ...|||.+||+.
T Consensus        72 ~~~~~~~~LIG~~~~~~~~~eqik~~ap~~~------~vLi~GetGtGKel~A~~iH--~~s---~r~~~~PFI~~NCa~  140 (403)
T COG1221          72 LKSEALDDLIGESPSLQELREQIKAYAPSGL------PVLIIGETGTGKELFARLIH--ALS---ARRAEAPFIAFNCAA  140 (403)
T ss_pred             ccchhhhhhhccCHHHHHHHHHHHhhCCCCC------cEEEecCCCccHHHHHHHHH--Hhh---hcccCCCEEEEEHHH
Confidence            3444555799999999999999998655444      68999999999999999996  334   44 688999999954


Q ss_pred             ---------ccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccc
Q psy1694         151 ---------IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY  208 (247)
Q Consensus       151 ---------l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~  208 (247)
                               +|++.++.   |++...+.. +.++.+.+|++|+|||..||+..|.+|+++||+++++
T Consensus       141 ~~en~~~~eLFG~~kGa---ftGa~~~k~-Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~  203 (403)
T COG1221         141 YSENLQEAELFGHEKGA---FTGAQGGKA-GLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYR  203 (403)
T ss_pred             hCcCHHHHHHhccccce---eecccCCcC-chheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceE
Confidence                     44444444   333223333 6788899999999999999999999999999999865

>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]

Probab=99.68  E-value=1e-16  Score=142.30  Aligned_cols=141  Identities=10%  Similarity=0.152  Sum_probs=111.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc-------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI-------  151 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l-------  151 (247)
                      .+++++..++.++...++.+..+.      .++++|++||||..+|++-  |+.+   .+..+||...||+.+       
T Consensus       205 ~~v~~S~~mk~~v~qA~k~AmlDA------PLLI~GeTGTGKdLlAkaC--H~~S---~R~~~pFlalNCA~lPe~~aEs  273 (511)
T COG3283         205 QIVAVSPKMKHVVEQAQKLAMLDA------PLLITGETGTGKDLLAKAC--HLAS---PRHSKPFLALNCASLPEDAAES  273 (511)
T ss_pred             HHhhccHHHHHHHHHHHHhhccCC------CeEEecCCCchHHHHHHHH--hhcC---cccCCCeeEeecCCCchhHhHH
Confidence            488999999999988888776554      4699999999999999999  7677   777899999999544       


Q ss_pred             --cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc----cccCCceEEEEEeCCC
Q psy1694         152 --HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN----QISFQNTIFLFLSNSG  225 (247)
Q Consensus       152 --~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~----~~~~~~~ifI~tSN~g  225 (247)
                        ++..++..+         -.+.++.+.++++++|||..|+|.+|.+|++||..+.+..    ..-+-++-+|++|   
T Consensus       274 ElFG~apg~~g---------k~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcat---  341 (511)
T COG3283         274 ELFGHAPGDEG---------KKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT---  341 (511)
T ss_pred             HHhcCCCCCCC---------ccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecc---
Confidence              443333211         2267788899999999999999999999999999987642    1122234477776   


Q ss_pred             hHHHHHHHHHHHHcCcccccC
Q psy1694         226 GTEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       226 ~~~i~~~~~~~~~~g~~Re~~  246 (247)
                          ...+.++.++|++||||
T Consensus       342 ----q~nL~~lv~~g~fReDL  358 (511)
T COG3283         342 ----QVNLVELVQKGKFREDL  358 (511)
T ss_pred             ----cccHHHHHhcCchHHHH
Confidence                45678899999999996

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=99.67  E-value=7.2e-17  Score=153.19  Aligned_cols=147  Identities=14%  Similarity=0.163  Sum_probs=106.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc-------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI-------  151 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l-------  151 (247)
                      .++|++++++.+.+.++.+...+.      .+++.|++||||+++|+.|++  .+   .+...||+.+||+.+       
T Consensus       213 ~iiG~S~~m~~~~~~i~~~A~~~~------pVLI~GE~GTGKe~lA~~IH~--~S---~r~~~pfv~inC~~l~e~lles  281 (526)
T TIGR02329       213 DLLGASAPMEQVRALVRLYARSDA------TVLILGESGTGKELVAQAIHQ--LS---GRRDFPFVAINCGAIAESLLEA  281 (526)
T ss_pred             heeeCCHHHHHHHHHHHHHhCCCC------cEEEECCCCcCHHHHHHHHHH--hc---CcCCCCEEEeccccCChhHHHH
Confidence            389999999999999998877665      789999999999999999954  45   556789999999755       


Q ss_pred             --cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc-c-c--cCCceEEEEEeCCC
Q psy1694         152 --HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q-I--SFQNTIFLFLSNSG  225 (247)
Q Consensus       152 --~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-~-~--~~~~~ifI~tSN~g  225 (247)
                        ++...+.   |.+.....-.+.++.+.++++|||||+.||+.+|.+|+++|+++.+.. + .  ---++-+|++||  
T Consensus       282 eLFG~~~ga---ftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~--  356 (526)
T TIGR02329       282 ELFGYEEGA---FTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATH--  356 (526)
T ss_pred             HhcCCcccc---cccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccC--
Confidence              2222221   111111112245677888999999999999999999999999976532 1 0  001234677764  


Q ss_pred             hHHHHHHHHHHHHcCcccccC
Q psy1694         226 GTEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       226 ~~~i~~~~~~~~~~g~~Re~~  246 (247)
                           +.+.+..++|.+|+||
T Consensus       357 -----~~l~~~v~~g~fr~dL  372 (526)
T TIGR02329       357 -----CALTTAVQQGRFRRDL  372 (526)
T ss_pred             -----CCHHHHhhhcchhHHH
Confidence                 4555677788888764

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>CHL00181 cbbX CbbX; Provisional

Probab=99.65  E-value=3.3e-15  Score=132.19  Aligned_cols=141  Identities=13%  Similarity=0.208  Sum_probs=99.6

Q ss_pred             cccHHHHHHHHHhhcCChHHHHHHHHHHHHH--------hhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccC
Q psy1694          66 SSNVRVLEEQLKQHVHGQELAISHICGALKN--------HFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD  137 (247)
Q Consensus        66 ~~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~--------~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~  137 (247)
                      +.+.+.+.+.|.+.++|...+++++.+.+..        ...... +..+++++|+||||||||++|+++|+.++.   .
T Consensus        11 ~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~-~~~~~~ill~G~pGtGKT~lAr~la~~~~~---~   86 (287)
T CHL00181         11 KTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTS-SNPGLHMSFTGSPGTGKTTVALKMADILYK---L   86 (287)
T ss_pred             ccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCCceEEEECCCCCCHHHHHHHHHHHHHH---c
Confidence            4668889999999999999999888765431        111111 335667999999999999999999999765   4


Q ss_pred             CC--CCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC---------ChhhHHHHHhhcccCc
Q psy1694         138 KG--TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHA  206 (247)
Q Consensus       138 g~--~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~---------~~~~~~~Ll~~Le~~~  206 (247)
                      |.  ..+++.++.+.+       ++.|.+.......+.+..+.++|+||||++.+         ....++.|++.|+++.
T Consensus        87 g~~~~~~~~~v~~~~l-------~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~  159 (287)
T CHL00181         87 GYIKKGHLLTVTRDDL-------VGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR  159 (287)
T ss_pred             CCCCCCceEEecHHHH-------HHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC
Confidence            43  345676665443       22232222223345667778899999999986         4578999999998754


Q ss_pred             ccccccCCceEEEEEeCC
Q psy1694         207 VYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       207 ~~~~~~~~~~ifI~tSN~  224 (247)
                             .+.++|++++.
T Consensus       160 -------~~~~vI~ag~~  170 (287)
T CHL00181        160 -------DDLVVIFAGYK  170 (287)
T ss_pred             -------CCEEEEEeCCc
Confidence                   56777777643

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=1e-15  Score=145.89  Aligned_cols=158  Identities=20%  Similarity=0.275  Sum_probs=117.6

Q ss_pred             cccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee
Q psy1694          66 SSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH  145 (247)
Q Consensus        66 ~~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~  145 (247)
                      +.|+...++.|++..+|-+.+.+++.+.+.-....+.  -+.-.++|+||||+|||.+++.||+.+..        .||+
T Consensus       311 ~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~--~kGpILcLVGPPGVGKTSLgkSIA~al~R--------kfvR  380 (782)
T COG0466         311 KLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKK--LKGPILCLVGPPGVGKTSLGKSIAKALGR--------KFVR  380 (782)
T ss_pred             hhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhcc--CCCcEEEEECCCCCCchhHHHHHHHHhCC--------CEEE
Confidence            4677888999999999999999999998864322221  23336899999999999999999999744        7999


Q ss_pred             eec------ccccCCCCChHHHHHHHHHHHHHHHHHhC--CCeEEEEeCCCCCChh----hHHHHHhhcccCc---ccc-
Q psy1694         146 KFN------SRIHFPNENHVSLYRLQLTNWIISNVTAC--DRAIFIFDEVDKFPKG----LLDVIIPFIDHHA---VYN-  209 (247)
Q Consensus       146 ~~~------~~l~~~~~~~v~~~~~~l~~~~~~~l~~~--~~~vlilDEiek~~~~----~~~~Ll~~Le~~~---~~~-  209 (247)
                      +..      +++-++..-    |-+.+.+++.+.+.++  ..++++|||||||..+    -..+||.+||..+   +.| 
T Consensus       381 ~sLGGvrDEAEIRGHRRT----YIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~Dh  456 (782)
T COG0466         381 ISLGGVRDEAEIRGHRRT----YIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDH  456 (782)
T ss_pred             EecCccccHHHhcccccc----ccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhc
Confidence            975      455555544    4446666666666665  3599999999999874    4789999999754   222 


Q ss_pred             ----cccCCceEEEEEeCCChHHHHHHHHHHHH
Q psy1694         210 ----QISFQNTIFLFLSNSGGTEIMNTFLELRK  238 (247)
Q Consensus       210 ----~~~~~~~ifI~tSN~g~~~i~~~~~~~~~  238 (247)
                          ..|.+++.||+|+|.- +.|.+-++|.++
T Consensus       457 YLev~yDLS~VmFiaTANsl-~tIP~PLlDRME  488 (782)
T COG0466         457 YLEVPYDLSKVMFIATANSL-DTIPAPLLDRME  488 (782)
T ss_pred             cccCccchhheEEEeecCcc-ccCChHHhccee
Confidence                2489999999999973 335555555443

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=99.63  E-value=7.7e-16  Score=146.53  Aligned_cols=146  Identities=12%  Similarity=0.138  Sum_probs=105.7

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH------  152 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~------  152 (247)
                      .++|++.+++.+.+.+++.+..+.      .++|+|++||||+++|++++.  .+   .+...||+.++|+.+.      
T Consensus       205 ~~ig~s~~~~~~~~~~~~~A~~~~------pvlI~GE~GtGK~~lA~aiH~--~s---~r~~~pfv~inca~~~~~~~e~  273 (520)
T PRK10820        205 QIVAVSPKMRQVVEQARKLAMLDA------PLLITGDTGTGKDLLAYACHL--RS---PRGKKPFLALNCASIPDDVVES  273 (520)
T ss_pred             ceeECCHHHHHHHHHHHHHhCCCC------CEEEECCCCccHHHHHHHHHH--hC---CCCCCCeEEeccccCCHHHHHH
Confidence            699999999999999988776554      579999999999999999944  45   5556899999997652      


Q ss_pred             ---CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccCCceEEEEEeCCC
Q psy1694         153 ---FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSG  225 (247)
Q Consensus       153 ---~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~~~~ifI~tSN~g  225 (247)
                         +..++.   |.+... .-.+.++.+.+++||||||+.||+.+|.+|+++|+++.+...    .-..++-+|++|+. 
T Consensus       274 elFG~~~~~---~~~~~~-~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~-  348 (520)
T PRK10820        274 ELFGHAPGA---YPNALE-GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK-  348 (520)
T ss_pred             HhcCCCCCC---cCCccc-CCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCC-
Confidence               211111   111000 112446677889999999999999999999999998754321    01124457887754 


Q ss_pred             hHHHHHHHHHHHHcCcccccC
Q psy1694         226 GTEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       226 ~~~i~~~~~~~~~~g~~Re~~  246 (247)
                            .+.++.++|.+|+||
T Consensus       349 ------~l~~l~~~g~f~~dL  363 (520)
T PRK10820        349 ------NLVELVQKGEFREDL  363 (520)
T ss_pred             ------CHHHHHHcCCccHHH
Confidence                  455777889999876

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=99.62  E-value=8.6e-16  Score=143.24  Aligned_cols=192  Identities=13%  Similarity=0.139  Sum_probs=124.0

Q ss_pred             HHHHHhhhhccCccccc------cceeeeeccCCCCCccccccccHHHHHHHHH----hhcCChHHHHHHHHHHHHHhhh
Q psy1694          30 GIAIAAGIAYFSPSIIN------SKFLNGFGGGEACTDKFIQSSNVRVLEEQLK----QHVHGQELAISHICGALKNHFQ   99 (247)
Q Consensus        30 ~~~~av~a~~~~a~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~----~~l~Gq~~a~~~l~~~l~~~~~   99 (247)
                      ....++.+++.||+||+      +.+...+.  ++..... .....+.+...+.    ..++|.+..++.+.+.+.....
T Consensus        84 ~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~--~~~~~~~-l~~~~~~l~~~~~~~~~~~lig~s~~~~~l~~~i~~~a~  160 (445)
T TIGR02915        84 DRENAVKAIGLGAYDFYQKPIDPDVLKLIVD--RAFHLYT-LETENRRLQSALGGTALRGLITSSPGMQKICRTIEKIAP  160 (445)
T ss_pred             CHHHHHHHHHCCccEEEeCCCCHHHHHHHHh--hhhhhhh-hHHHHHHhhhhhhcccccceeecCHHHHHHHHHHHHHhC
Confidence            46778999999999998      33334443  3222111 1111222333222    2489999999998888876544


Q ss_pred             cccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc---------cCCCCChHHHHHHHHHHHH
Q psy1694         100 NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI---------HFPNENHVSLYRLQLTNWI  170 (247)
Q Consensus       100 ~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l---------~~~~~~~v~~~~~~l~~~~  170 (247)
                      ...      .+++.|++||||+++|+.++..  +   .....+|+.++|+.+         ++...+.   |.+.. ...
T Consensus       161 ~~~------~vli~Ge~GtGK~~lA~~ih~~--s---~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~---~~~~~-~~~  225 (445)
T TIGR02915       161 SDI------TVLLLGESGTGKEVLARALHQL--S---DRKDKRFVAINCAAIPENLLESELFGYEKGA---FTGAV-KQT  225 (445)
T ss_pred             CCC------CEEEECCCCcCHHHHHHHHHHh--C---CcCCCCeEEEECCCCChHHHHHHhcCCCCCC---cCCCc-cCC
Confidence            333      5789999999999999999554  4   444678999999765         1111111   00000 011


Q ss_pred             HHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc-c-c--cCCceEEEEEeCCChHHHHHHHHHHHHcCcccccC
Q psy1694         171 ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q-I--SFQNTIFLFLSNSGGTEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       171 ~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-~-~--~~~~~ifI~tSN~g~~~i~~~~~~~~~~g~~Re~~  246 (247)
                      .+.+..+.++++||||++.||+.+|.+|+++|+++.+.. + .  .-.++-+|++||.       .+.+..++|.+|+||
T Consensus       226 ~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~-------~l~~~~~~~~~~~~L  298 (445)
T TIGR02915       226 LGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQ-------DLKRMIAEGTFREDL  298 (445)
T ss_pred             CCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCC-------CHHHHHHcCCccHHH
Confidence            234566788999999999999999999999999875421 1 1  1124568888854       444667788888775

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=99.62  E-value=1.6e-15  Score=136.50  Aligned_cols=149  Identities=10%  Similarity=0.109  Sum_probs=105.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC--C
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN--E  156 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~--~  156 (247)
                      .++|.+.+++.+.+.+.+.+..+.      .++++|++||||+++|++|+.  .+   .+...||+.++|+.+....  .
T Consensus         7 ~liG~S~~~~~~~~~i~~~a~~~~------pVlI~GE~GtGK~~lA~~iH~--~s---~r~~~pfv~v~c~~~~~~~~~~   75 (326)
T PRK11608          7 NLLGEANSFLEVLEQVSRLAPLDK------PVLIIGERGTGKELIASRLHY--LS---SRWQGPFISLNCAALNENLLDS   75 (326)
T ss_pred             ccEECCHHHHHHHHHHHHHhCCCC------CEEEECCCCCcHHHHHHHHHH--hC---CccCCCeEEEeCCCCCHHHHHH
Confidence            589999999999999998876554      689999999999999999954  45   5556799999998752100  0


Q ss_pred             ChHH----HHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc-cc---cCCceEEEEEeCCChHH
Q psy1694         157 NHVS----LYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-QI---SFQNTIFLFLSNSGGTE  228 (247)
Q Consensus       157 ~~v~----~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-~~---~~~~~ifI~tSN~g~~~  228 (247)
                      ..++    .+.+.... ..+.+..+.++++||||++.+|+.+|.+|+++|+++.+.. +.   --.++.+|++||.    
T Consensus        76 ~lfg~~~~~~~g~~~~-~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~----  150 (326)
T PRK11608         76 ELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA----  150 (326)
T ss_pred             HHccccccccCCcccc-cCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch----
Confidence            0000    00000000 1244677888999999999999999999999999876432 10   1124568888744    


Q ss_pred             HHHHHHHHHHcCcccccC
Q psy1694         229 IMNTFLELRKSGERYITI  246 (247)
Q Consensus       229 i~~~~~~~~~~g~~Re~~  246 (247)
                         .+.++.++|.+|+||
T Consensus       151 ---~l~~l~~~g~f~~dL  165 (326)
T PRK11608        151 ---DLPAMVAEGKFRADL  165 (326)
T ss_pred             ---hHHHHHHcCCchHHH
Confidence               555667778887764

>TIGR01817 nifA Nif-specific regulatory protein

Probab=99.62  E-value=1.5e-15  Score=145.10  Aligned_cols=146  Identities=12%  Similarity=0.149  Sum_probs=104.2

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH------  152 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~------  152 (247)
                      .++|++.+++.+.+.+++......      .++|+||+||||+++|++|++.  +   .+...||+.++|+.+.      
T Consensus       197 ~liG~s~~~~~~~~~~~~~a~~~~------pvli~Ge~GtGK~~lA~~ih~~--s---~r~~~pfv~i~c~~~~~~~~~~  265 (534)
T TIGR01817       197 GIIGKSPAMRQVVDQARVVARSNS------TVLLRGESGTGKELIAKAIHYL--S---PRAKRPFVKVNCAALSETLLES  265 (534)
T ss_pred             ceEECCHHHHHHHHHHHHHhCcCC------CEEEECCCCccHHHHHHHHHHh--C---CCCCCCeEEeecCCCCHHHHHH
Confidence            589999999999999998876554      6799999999999999999654  4   4456799999997651      


Q ss_pred             ---CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc--c--ccCCceEEEEEeCCC
Q psy1694         153 ---FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--Q--ISFQNTIFLFLSNSG  225 (247)
Q Consensus       153 ---~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~--~--~~~~~~ifI~tSN~g  225 (247)
                         +..++.   |.+... .-.+.+..+.++++|||||+.+|+..|.+|+++|+++.+..  +  ....++.+|++||..
T Consensus       266 ~lfg~~~~~---~~~~~~-~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~  341 (534)
T TIGR01817       266 ELFGHEKGA---FTGAIA-QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRD  341 (534)
T ss_pred             HHcCCCCCc---cCCCCc-CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCC
Confidence               111111   000000 01123556778999999999999999999999999876432  1  111245688888764


Q ss_pred             hHHHHHHHHHHHHcCcccccC
Q psy1694         226 GTEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       226 ~~~i~~~~~~~~~~g~~Re~~  246 (247)
                      .       .+..++|.+|+||
T Consensus       342 l-------~~~~~~~~f~~~L  355 (534)
T TIGR01817       342 L-------EEAVAKGEFRADL  355 (534)
T ss_pred             H-------HHHHHcCCCCHHH
Confidence            3       3456688888875

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=99.61  E-value=2.2e-15  Score=143.10  Aligned_cols=146  Identities=13%  Similarity=0.172  Sum_probs=106.3

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH------  152 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~------  152 (247)
                      .++|++.+++.+.+.++.....+.      .++|+|++||||+++|++|++.  +   .+...||+.++|+.+.      
T Consensus       188 ~iig~s~~~~~~~~~i~~~a~~~~------pVlI~Ge~GtGK~~~A~~ih~~--s---~r~~~p~v~v~c~~~~~~~~e~  256 (509)
T PRK05022        188 EMIGQSPAMQQLKKEIEVVAASDL------NVLILGETGVGKELVARAIHAA--S---PRADKPLVYLNCAALPESLAES  256 (509)
T ss_pred             ceeecCHHHHHHHHHHHHHhCCCC------cEEEECCCCccHHHHHHHHHHh--C---CcCCCCeEEEEcccCChHHHHH
Confidence            489999999999999998876655      7899999999999999999554  4   4556799999997652      


Q ss_pred             ---CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc--c--ccCCceEEEEEeCCC
Q psy1694         153 ---FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--Q--ISFQNTIFLFLSNSG  225 (247)
Q Consensus       153 ---~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~--~--~~~~~~ifI~tSN~g  225 (247)
                         +...+.   |.+.... -.+.+..+.++++|||||+.||+.+|.+|+++|+++.+..  +  ....++-+|++||. 
T Consensus       257 ~lfG~~~g~---~~ga~~~-~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~-  331 (509)
T PRK05022        257 ELFGHVKGA---FTGAISN-RSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR-  331 (509)
T ss_pred             HhcCccccc---cCCCccc-CCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC-
Confidence               111111   1000000 1134667888999999999999999999999999876422  1  11124557888754 


Q ss_pred             hHHHHHHHHHHHHcCcccccC
Q psy1694         226 GTEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       226 ~~~i~~~~~~~~~~g~~Re~~  246 (247)
                            .+.+...+|.+|+||
T Consensus       332 ------~l~~~~~~~~f~~dL  346 (509)
T PRK05022        332 ------DLREEVRAGRFRADL  346 (509)
T ss_pred             ------CHHHHHHcCCccHHH
Confidence                  555777889998875

>TIGR00763 lon ATP-dependent protease La

Probab=99.60  E-value=3.3e-15  Score=148.24  Aligned_cols=145  Identities=19%  Similarity=0.276  Sum_probs=99.6

Q ss_pred             ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694          67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK  146 (247)
Q Consensus        67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~  146 (247)
                      .+...+++.|++.++||+.+++.+.+.+......+. .+.| .++|+||||||||++|++||+.+..        +|+.+
T Consensus       309 ~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~-~~~~-~lll~GppG~GKT~lAk~iA~~l~~--------~~~~i  378 (775)
T TIGR00763       309 LDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGK-MKGP-ILCLVGPPGVGKTSLGKSIAKALNR--------KFVRF  378 (775)
T ss_pred             hhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC-CCCc-eEEEECCCCCCHHHHHHHHHHHhcC--------CeEEE
Confidence            457788999999999999999999887664432222 2233 7899999999999999999998643        67777


Q ss_pred             ecccc------cCCCCChHHHHHHHHHHHHHHHHHhC--CCeEEEEeCCCCCChh----hHHHHHhhccc---Ccccc--
Q psy1694         147 FNSRI------HFPNENHVSLYRLQLTNWIISNVTAC--DRAIFIFDEVDKFPKG----LLDVIIPFIDH---HAVYN--  209 (247)
Q Consensus       147 ~~~~l------~~~~~~~v~~~~~~l~~~~~~~l~~~--~~~vlilDEiek~~~~----~~~~Ll~~Le~---~~~~~--  209 (247)
                      +++..      .++...+++    ...+.+.+.+..+  ..++++|||||++.++    ..+.|+++||+   +.+.+  
T Consensus       379 ~~~~~~~~~~i~g~~~~~~g----~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~  454 (775)
T TIGR00763       379 SLGGVRDEAEIRGHRRTYVG----AMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHY  454 (775)
T ss_pred             eCCCcccHHHHcCCCCceeC----CCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCcccccc
Confidence            65432      122222222    1122222333332  3479999999999764    35889999985   23332  


Q ss_pred             ---cccCCceEEEEEeCCC
Q psy1694         210 ---QISFQNTIFLFLSNSG  225 (247)
Q Consensus       210 ---~~~~~~~ifI~tSN~g  225 (247)
                         .+|+++++||+|||..
T Consensus       455 ~~~~~d~s~v~~I~TtN~~  473 (775)
T TIGR00763       455 LDVPFDLSKVIFIATANSI  473 (775)
T ss_pred             CCceeccCCEEEEEecCCc
Confidence               3578999999999974

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]

Probab=99.60  E-value=3.3e-16  Score=147.72  Aligned_cols=141  Identities=12%  Similarity=0.159  Sum_probs=108.0

Q ss_pred             CChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc---------cc
Q psy1694          81 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS---------RI  151 (247)
Q Consensus        81 ~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~---------~l  151 (247)
                      .+++...+.+...+.++.....      .+++.|+|||||..+||++++.  +   . ..+|||.+||.         ++
T Consensus       316 ~~~d~s~a~l~rk~~rv~~~~~------pvll~GEtGtGKe~laraiH~~--s---~-~~gpfvAvNCaAip~~liesEL  383 (606)
T COG3284         316 PLLDPSRATLLRKAERVAATDL------PVLLQGETGTGKEVLARAIHQN--S---E-AAGPFVAVNCAAIPEALIESEL  383 (606)
T ss_pred             cccCHHHHHHHHHHHHHhhcCC------CeEecCCcchhHHHHHHHHHhc--c---c-ccCCeEEEEeccchHHhhhHHH
Confidence            4666677777777776655444      5799999999999999999554  4   4 67899999994         44


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccc------ccccCCceEEEEEeCCC
Q psy1694         152 HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY------NQISFQNTIFLFLSNSG  225 (247)
Q Consensus       152 ~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~------~~~~~~~~ifI~tSN~g  225 (247)
                      ++-.++.   |++...+-.++.++.++++++|+|||+.||.++|..||++|+++.++      ..||++   +|.+|   
T Consensus       384 FGy~~Ga---fTga~~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdir---vi~at---  454 (606)
T COG3284         384 FGYVAGA---FTGARRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIR---VIAAT---  454 (606)
T ss_pred             hccCccc---cccchhccccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEE---EEecc---
Confidence            4444444   33333344557888999999999999999999999999999998754      235666   44444   


Q ss_pred             hHHHHHHHHHHHHcCcccccC
Q psy1694         226 GTEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       226 ~~~i~~~~~~~~~~g~~Re~~  246 (247)
                          ++.+.+++++|+|||||
T Consensus       455 ----h~dl~~lv~~g~fredL  471 (606)
T COG3284         455 ----HRDLAQLVEQGRFREDL  471 (606)
T ss_pred             ----CcCHHHHHHcCCchHHH
Confidence                67899999999999997

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=99.60  E-value=3.2e-15  Score=139.64  Aligned_cols=193  Identities=12%  Similarity=0.124  Sum_probs=126.3

Q ss_pred             hHHHHHhhhhccCcccccc------ceeeeeccCCCCCccccccccHHHHHHHHHh-----hcCChHHHHHHHHHHHHHh
Q psy1694          29 SGIAIAAGIAYFSPSIINS------KFLNGFGGGEACTDKFIQSSNVRVLEEQLKQ-----HVHGQELAISHICGALKNH   97 (247)
Q Consensus        29 ~~~~~av~a~~~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~-----~l~Gq~~a~~~l~~~l~~~   97 (247)
                      .....++.++..||+||+.      .+...+.  .++.... .......++..+..     .++|+++++..+.+.+...
T Consensus        86 ~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~--~~l~~~~-l~~~~~~l~~~l~~~~~~~~ii~~S~~~~~~~~~~~~~  162 (457)
T PRK11361         86 AEVETAVEALRCGAFDYVIKPFDLDELNLIVQ--RALQLQS-MKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKI  162 (457)
T ss_pred             CCHHHHHHHHHCCccEEEecccCHHHHHHHHh--hhccccc-cchhhhhhhhhhhccccccceecccHHHhHHHHHHHHH
Confidence            3456778999999999982      2333333  3333221 22233333444332     4889999999998888877


Q ss_pred             hhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc---------CCCCChHHHHHHHHHH
Q psy1694          98 FQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH---------FPNENHVSLYRLQLTN  168 (247)
Q Consensus        98 ~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~---------~~~~~~v~~~~~~l~~  168 (247)
                      .....      .+++.|++||||+++|+.++..  +   .+...+|+.++|..+.         +...+.   +.+... 
T Consensus       163 a~~~~------~vli~Ge~GtGK~~lA~~ih~~--s---~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~---~~~~~~-  227 (457)
T PRK11361        163 ALSQA------SVLISGESGTGKELIARAIHYN--S---RRAKGPFIKVNCAALPESLLESELFGHEKGA---FTGAQT-  227 (457)
T ss_pred             cCCCc------EEEEEcCCCccHHHHHHHHHHh--C---CCCCCCeEEEECCCCCHHHHHHHhcCCCCCC---CCCCCC-
Confidence            66554      6899999999999999999553  4   4556799999997652         111110   000000 


Q ss_pred             HHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc-cc---cCCceEEEEEeCCChHHHHHHHHHHHHcCcccc
Q psy1694         169 WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-QI---SFQNTIFLFLSNSGGTEIMNTFLELRKSGERYI  244 (247)
Q Consensus       169 ~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-~~---~~~~~ifI~tSN~g~~~i~~~~~~~~~~g~~Re  244 (247)
                      .-.+.+..+.++++||||++.+|+.+|.+|+++|+++.+.. +.   -..++-+|++||..       +.++.++|.+|+
T Consensus       228 ~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~-------l~~~~~~g~~~~  300 (457)
T PRK11361        228 LRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRD-------LQAMVKEGTFRE  300 (457)
T ss_pred             CCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCC-------HHHHHHcCCchH
Confidence            01134566778999999999999999999999999876431 10   11245688888653       345667777777


Q ss_pred             cC
Q psy1694         245 TI  246 (247)
Q Consensus       245 ~~  246 (247)
                      |+
T Consensus       301 ~l  302 (457)
T PRK11361        301 DL  302 (457)
T ss_pred             HH
Confidence            64

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.59  E-value=2e-14  Score=127.08  Aligned_cols=141  Identities=13%  Similarity=0.160  Sum_probs=96.4

Q ss_pred             ccHHHHHHHHHhhcCChHHHHHHHHHHHHHh-----hh-cccCCCC-CeEEEEeecCCChHHHHHHHHHHHhhccccCCC
Q psy1694          67 SNVRVLEEQLKQHVHGQELAISHICGALKNH-----FQ-NRYHNTK-ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG  139 (247)
Q Consensus        67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~-----~~-~~~~~~k-pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~  139 (247)
                      ...+.+.+.|.+.++|.+.+++.+.+.+.-.     .. ....+.. .+.++|+||||||||++|+++|+.++.   .+.
T Consensus        11 ~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~---~g~   87 (284)
T TIGR02880        11 SGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHR---LGY   87 (284)
T ss_pred             ccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHH---cCC
Confidence            4466777788878999999999887654321     11 0111122 346899999999999999999999876   443


Q ss_pred             --CCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC---------ChhhHHHHHhhcccCccc
Q psy1694         140 --TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAVY  208 (247)
Q Consensus       140 --~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~---------~~~~~~~Ll~~Le~~~~~  208 (247)
                        ..+++.++++.+..       .|.+.....+.+.+..+.+++|||||++.+         +..+++.|++.|+++.  
T Consensus        88 ~~~~~~v~v~~~~l~~-------~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~--  158 (284)
T TIGR02880        88 VRKGHLVSVTRDDLVG-------QYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR--  158 (284)
T ss_pred             cccceEEEecHHHHhH-------hhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC--
Confidence              34688777655422       121111223445677778899999999987         3567899999998754  


Q ss_pred             ccccCCceEEEEEeCC
Q psy1694         209 NQISFQNTIFLFLSNS  224 (247)
Q Consensus       209 ~~~~~~~~ifI~tSN~  224 (247)
                           .+.++|++++.
T Consensus       159 -----~~~~vI~a~~~  169 (284)
T TIGR02880       159 -----DDLVVILAGYK  169 (284)
T ss_pred             -----CCEEEEEeCCc
Confidence                 56777777654

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>KOG0989|consensus

Probab=99.59  E-value=6e-15  Score=128.80  Aligned_cols=128  Identities=18%  Similarity=0.196  Sum_probs=87.7

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcceeeecccccCCC--
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVHKFNSRIHFPN--  155 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v~~~~~~l~~~~--  155 (247)
                      .+.||+.+++.+.+++.+ ...+       +++|+||||||||.+|+++|+.+++   +.. .......+.+.-.|-.  
T Consensus        37 e~~gQe~vV~~L~~a~~~-~~lp-------~~LFyGPpGTGKTStalafar~L~~---~~~~~~rvl~lnaSderGisvv  105 (346)
T KOG0989|consen   37 ELAGQEHVVQVLKNALLR-RILP-------HYLFYGPPGTGKTSTALAFARALNC---EQLFPCRVLELNASDERGISVV  105 (346)
T ss_pred             hhcchHHHHHHHHHHHhh-cCCc-------eEEeeCCCCCcHhHHHHHHHHHhcC---ccccccchhhhcccccccccch
Confidence            499999999999999987 3333       6899999999999999999999988   221 1122222222211111  


Q ss_pred             CChHHHHHHHHHHHHHHHH-----HhC-CCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHH
Q psy1694         156 ENHVSLYRLQLTNWIISNV-----TAC-DRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEI  229 (247)
Q Consensus       156 ~~~v~~~~~~l~~~~~~~l-----~~~-~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i  229 (247)
                      ...+..|.     .+....     ..| ++.||||||.|.|+.+.|.+|+++||...       +++.||+++|.-...|
T Consensus       106 r~Kik~fa-----kl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s-------~~trFiLIcnylsrii  173 (346)
T KOG0989|consen  106 REKIKNFA-----KLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS-------RTTRFILICNYLSRII  173 (346)
T ss_pred             hhhhcCHH-----HHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc-------cceEEEEEcCChhhCC
Confidence            01111111     111111     112 34999999999999999999999999965       8899999999865544

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=99.58  E-value=5e-15  Score=144.27  Aligned_cols=144  Identities=8%  Similarity=0.137  Sum_probs=103.9

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++|++.+++.+.+.+++.+..+.      .++|+|++||||+++|++|++.  +   .+...||+.++|+.+.  . ..
T Consensus       326 ~l~g~s~~~~~~~~~~~~~a~~~~------pvli~Ge~GtGK~~~A~~ih~~--s---~r~~~pfv~vnc~~~~--~-~~  391 (638)
T PRK11388        326 HMPQDSPQMRRLIHFGRQAAKSSF------PVLLCGEEGVGKALLAQAIHNE--S---ERAAGPYIAVNCQLYP--D-EA  391 (638)
T ss_pred             ceEECCHHHHHHHHHHHHHhCcCC------CEEEECCCCcCHHHHHHHHHHh--C---CccCCCeEEEECCCCC--h-HH
Confidence            488999999999999988876554      5899999999999999999554  4   4456799999997752  1 10


Q ss_pred             HHHHHHHHH--------HHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc--cc-c-CCceEEEEEeCCCh
Q psy1694         159 VSLYRLQLT--------NWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--QI-S-FQNTIFLFLSNSGG  226 (247)
Q Consensus       159 v~~~~~~l~--------~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~--~~-~-~~~~ifI~tSN~g~  226 (247)
                         ....+-        +...+.++.+.+++||||||+.||+.+|.+|+++|+++.+..  +. . --++.+|++||.. 
T Consensus       392 ---~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~-  467 (638)
T PRK11388        392 ---LAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD-  467 (638)
T ss_pred             ---HHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC-
Confidence               000000        001134667788999999999999999999999999876532  10 0 0134588887653 


Q ss_pred             HHHHHHHHHHHHcCcccccC
Q psy1694         227 TEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       227 ~~i~~~~~~~~~~g~~Re~~  246 (247)
                            +.++.++|.+|+||
T Consensus       468 ------l~~~~~~~~f~~dL  481 (638)
T PRK11388        468 ------LAMLVEQNRFSRQL  481 (638)
T ss_pred             ------HHHHHhcCCChHHH
Confidence                  35667778888875

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.57  E-value=3.8e-14  Score=123.68  Aligned_cols=131  Identities=12%  Similarity=0.160  Sum_probs=88.1

Q ss_pred             HHHhhcCChHHHHHHHHHHHHHh----h--hccc-CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCC--CCCccee
Q psy1694          75 QLKQHVHGQELAISHICGALKNH----F--QNRY-HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK--GTSRFVH  145 (247)
Q Consensus        75 ~L~~~l~Gq~~a~~~l~~~l~~~----~--~~~~-~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g--~~~~~v~  145 (247)
                      .|++ ++|.+.+++.+.+.+...    .  .... .+..+..++|+||||||||++|+++|+.++.   .+  ...+++.
T Consensus         4 ~l~~-~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~---~~~~~~~~~v~   79 (261)
T TIGR02881         4 ELSR-MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKE---MNVLSKGHLIE   79 (261)
T ss_pred             HHHH-hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHh---cCcccCCceEE
Confidence            4544 999999998887655321    1  0111 1234567999999999999999999998765   33  2456777


Q ss_pred             eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC--------hhhHHHHHhhcccCcccccccCCceE
Q psy1694         146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP--------KGLLDVIIPFIDHHAVYNQISFQNTI  217 (247)
Q Consensus       146 ~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~--------~~~~~~Ll~~Le~~~~~~~~~~~~~i  217 (247)
                      +.++.+..       .|.+.....+.+.+..+.+++|||||++.+.        ...++.|++.+++++       .+.+
T Consensus        80 ~~~~~l~~-------~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-------~~~~  145 (261)
T TIGR02881        80 VERADLVG-------EYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-------NEFV  145 (261)
T ss_pred             ecHHHhhh-------hhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-------CCEE
Confidence            76665432       2222223444566777778999999999876        357889999998854       3445


Q ss_pred             EEEEeC
Q psy1694         218 FLFLSN  223 (247)
Q Consensus       218 fI~tSN  223 (247)
                      +|++++
T Consensus       146 vila~~  151 (261)
T TIGR02881       146 LILAGY  151 (261)
T ss_pred             EEecCC
Confidence            555543

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=99.56  E-value=4e-15  Score=139.71  Aligned_cols=146  Identities=11%  Similarity=0.176  Sum_probs=103.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH------  152 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~------  152 (247)
                      .++|.+.+++.+...+........      .+++.|++||||+++|+++++.  +   .+...||+.++|+.+.      
T Consensus       139 ~lig~s~~~~~l~~~~~~~~~~~~------~vli~Ge~GtGK~~lA~~ih~~--s---~~~~~~~i~i~c~~~~~~~~~~  207 (469)
T PRK10923        139 DIIGEAPAMQDVFRIIGRLSRSSI------SVLINGESGTGKELVAHALHRH--S---PRAKAPFIALNMAAIPKDLIES  207 (469)
T ss_pred             cceecCHHHHHHHHHHHHHhccCC------eEEEEeCCCCcHHHHHHHHHhc--C---CCCCCCeEeeeCCCCCHHHHHH
Confidence            488999999999888877654443      6899999999999999999554  4   4556899999997651      


Q ss_pred             ---CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccCCceEEEEEeCCC
Q psy1694         153 ---FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSG  225 (247)
Q Consensus       153 ---~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~~~~ifI~tSN~g  225 (247)
                         ++..+.   |.+.. ....+.+..+.++++||||++.||+..|.+|+++|+++.+...    ....++-+|+|||. 
T Consensus       208 ~lfg~~~g~---~~~~~-~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~-  282 (469)
T PRK10923        208 ELFGHEKGA---FTGAN-TIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQ-  282 (469)
T ss_pred             HhcCCCCCC---CCCCC-cCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCC-
Confidence               111111   00000 0011235567789999999999999999999999999765321    11235568888855 


Q ss_pred             hHHHHHHHHHHHHcCcccccC
Q psy1694         226 GTEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       226 ~~~i~~~~~~~~~~g~~Re~~  246 (247)
                            .+.++.++|.+|+||
T Consensus       283 ------~l~~~~~~~~~~~~L  297 (469)
T PRK10923        283 ------NLEQRVQEGKFREDL  297 (469)
T ss_pred             ------CHHHHHHcCCchHHH
Confidence                  445677888888775

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=99.55  E-value=1.4e-14  Score=142.29  Aligned_cols=146  Identities=14%  Similarity=0.200  Sum_probs=104.8

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH------  152 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~------  152 (247)
                      .++|++++++.+.+.+...+..+.      .+++.||+|||||++|++|+..  +   .+...||+.++|..+.      
T Consensus       377 ~liG~S~~~~~~~~~~~~~a~~~~------pVLI~GE~GTGK~~lA~~ih~~--s---~r~~~~~v~i~c~~~~~~~~~~  445 (686)
T PRK15429        377 EIIGRSEAMYSVLKQVEMVAQSDS------TVLILGETGTGKELIARAIHNL--S---GRNNRRMVKMNCAAMPAGLLES  445 (686)
T ss_pred             ceeecCHHHHHHHHHHHHHhCCCC------CEEEECCCCcCHHHHHHHHHHh--c---CCCCCCeEEEecccCChhHhhh
Confidence            489999999999999998776554      6899999999999999999554  4   4456799999997652      


Q ss_pred             ---CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc--c--ccCCceEEEEEeCCC
Q psy1694         153 ---FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--Q--ISFQNTIFLFLSNSG  225 (247)
Q Consensus       153 ---~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~--~--~~~~~~ifI~tSN~g  225 (247)
                         ++..+.   +.+....+ .+.+..+.++++|||||+.+|+++|.+|+++|+++.+..  +  .-..++-+|++||. 
T Consensus       446 ~lfg~~~~~---~~g~~~~~-~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~-  520 (686)
T PRK15429        446 DLFGHERGA---FTGASAQR-IGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR-  520 (686)
T ss_pred             hhcCccccc---ccccccch-hhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC-
Confidence               111111   11111111 245677888999999999999999999999999876432  1  11134568888865 


Q ss_pred             hHHHHHHHHHHHHcCcccccC
Q psy1694         226 GTEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       226 ~~~i~~~~~~~~~~g~~Re~~  246 (247)
                            .+.+...+|.+|+|+
T Consensus       521 ------~l~~~~~~~~f~~~L  535 (686)
T PRK15429        521 ------DLKKMVADREFRSDL  535 (686)
T ss_pred             ------CHHHHHHcCcccHHH
Confidence                  344556777777764

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.55  E-value=3.5e-14  Score=120.16  Aligned_cols=105  Identities=19%  Similarity=0.334  Sum_probs=66.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  157 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~  157 (247)
                      .++||+..+..+.-.++....    .+.++ .++|+||||+|||++|+.||+.+-.        +|...+.+.+     .
T Consensus        25 efiGQ~~l~~~l~i~i~aa~~----r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~--------~~~~~sg~~i-----~   87 (233)
T PF05496_consen   25 EFIGQEHLKGNLKILIRAAKK----RGEALDHMLFYGPPGLGKTTLARIIANELGV--------NFKITSGPAI-----E   87 (233)
T ss_dssp             CS-S-HHHHHHHHHHHHHHHC----TTS---EEEEESSTTSSHHHHHHHHHHHCT----------EEEEECCC-------
T ss_pred             HccCcHHHHhhhHHHHHHHHh----cCCCcceEEEECCCccchhHHHHHHHhccCC--------CeEeccchhh-----h
Confidence            599999999887655554322    12333 5899999999999999999998532        5544433222     1


Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcc
Q psy1694         158 HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV  207 (247)
Q Consensus       158 ~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~  207 (247)
                      ..+    .+...+. .+  ..+.|+|+|||+++++.+|+.|+++||++.+
T Consensus        88 k~~----dl~~il~-~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~i  130 (233)
T PF05496_consen   88 KAG----DLAAILT-NL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKI  130 (233)
T ss_dssp             SCH----HHHHHHH-T----TT-EEEECTCCC--HHHHHHHHHHHHCSEE
T ss_pred             hHH----HHHHHHH-hc--CCCcEEEEechhhccHHHHHHHHHHhccCeE
Confidence            111    1222221 12  3568999999999999999999999999874

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>KOG2004|consensus

Probab=99.55  E-value=2e-14  Score=136.79  Aligned_cols=156  Identities=17%  Similarity=0.274  Sum_probs=116.5

Q ss_pred             ccHHHHHHHHHhhcCChHHHHHHHHHHHH-HhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee
Q psy1694          67 SNVRVLEEQLKQHVHGQELAISHICGALK-NHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH  145 (247)
Q Consensus        67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~-~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~  145 (247)
                      .++.+-++.|++..+|-+++++++.+.+. +.+.+..   +...+.|+||||+|||.+|+.||+.|..        .|++
T Consensus       400 ~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~---qGkIlCf~GPPGVGKTSI~kSIA~ALnR--------kFfR  468 (906)
T KOG2004|consen  400 LDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSV---QGKILCFVGPPGVGKTSIAKSIARALNR--------KFFR  468 (906)
T ss_pred             hhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccC---CCcEEEEeCCCCCCcccHHHHHHHHhCC--------ceEE
Confidence            45667788899999999999999998876 2333333   5557999999999999999999999744        6888


Q ss_pred             eec------ccccCCCCChHHHHHHHHHHHHHHHHHhCC--CeEEEEeCCCCCCh----hhHHHHHhhcccCc---ccc-
Q psy1694         146 KFN------SRIHFPNENHVSLYRLQLTNWIISNVTACD--RAIFIFDEVDKFPK----GLLDVIIPFIDHHA---VYN-  209 (247)
Q Consensus       146 ~~~------~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~--~~vlilDEiek~~~----~~~~~Ll~~Le~~~---~~~-  209 (247)
                      +..      +++.++..-    |.+.+.+++.+.++.+.  .++++||||||+..    +-..+||.+||..+   +.| 
T Consensus       469 fSvGG~tDvAeIkGHRRT----YVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDH  544 (906)
T KOG2004|consen  469 FSVGGMTDVAEIKGHRRT----YVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDH  544 (906)
T ss_pred             EeccccccHHhhccccee----eeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhh
Confidence            864      455555444    55567777777777764  59999999999976    34689999999754   222 


Q ss_pred             ----cccCCceEEEEEeCCChHHHHHHHHHHHH
Q psy1694         210 ----QISFQNTIFLFLSNSGGTEIMNTFLELRK  238 (247)
Q Consensus       210 ----~~~~~~~ifI~tSN~g~~~i~~~~~~~~~  238 (247)
                          .+|.+++.||+|.|.- +.|..-++|.++
T Consensus       545 YLdVp~DLSkVLFicTAN~i-dtIP~pLlDRME  576 (906)
T KOG2004|consen  545 YLDVPVDLSKVLFICTANVI-DTIPPPLLDRME  576 (906)
T ss_pred             ccccccchhheEEEEecccc-ccCChhhhhhhh
Confidence                3699999999999973 334455555443

>PRK15115 response regulator GlrR; Provisional

Probab=99.51  E-value=2.9e-14  Score=132.97  Aligned_cols=187  Identities=11%  Similarity=0.127  Sum_probs=118.7

Q ss_pred             HHHHHhhhhccCccccccc------eeeeeccCCCCCccccccccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccC
Q psy1694          30 GIAIAAGIAYFSPSIINSK------FLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYH  103 (247)
Q Consensus        30 ~~~~av~a~~~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~  103 (247)
                      ....++.++..||++|+.+      +...+.  +++.... . ..    .......++|.+..+..+.+.+........ 
T Consensus        88 ~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~--~~~~~~~-~-~~----~~~~~~~lig~s~~~~~~~~~~~~~a~~~~-  158 (444)
T PRK15115         88 SIPDAVAATQQGVFSFLTKPVDRDALYKAID--DALEQSA-P-AT----DERWREAIVTRSPLMLRLLEQARMVAQSDV-  158 (444)
T ss_pred             CHHHHHHHHhcChhhhccCCCCHHHHHHHHH--HHHHhhh-c-cc----ccchhhcccccCHHHHHHHHHHHhhccCCC-
Confidence            3456788999999988733      111121  1111000 0 00    011223578888888877777766554433 


Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC---------CCCChHHHHHHHHHHHHHHHH
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF---------PNENHVSLYRLQLTNWIISNV  174 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~---------~~~~~v~~~~~~l~~~~~~~l  174 (247)
                           .+++.|++||||+++|+.+++.  +   .+...+|+.++|..+..         ...+.   |.+.. ....+.+
T Consensus       159 -----~vli~Ge~GtGk~~lA~~ih~~--s---~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~---~~~~~-~~~~g~~  224 (444)
T PRK15115        159 -----SVLINGQSGTGKEILAQAIHNA--S---PRASKPFIAINCGALPEQLLESELFGHARGA---FTGAV-SNREGLF  224 (444)
T ss_pred             -----eEEEEcCCcchHHHHHHHHHHh--c---CCCCCCeEEEeCCCCCHHHHHHHhcCCCcCC---CCCCc-cCCCCcE
Confidence                 6789999999999999999554  4   44567999999976521         11110   00000 0011245


Q ss_pred             HhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc-c--c-cCCceEEEEEeCCChHHHHHHHHHHHHcCcccccC
Q psy1694         175 TACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q--I-SFQNTIFLFLSNSGGTEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       175 ~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-~--~-~~~~~ifI~tSN~g~~~i~~~~~~~~~~g~~Re~~  246 (247)
                      ..+.++++||||++.||+..|.+|+++|+++.+.. +  . ...++.+|++|+.       .+.+.+.+|.+|+|+
T Consensus       225 ~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~-------~l~~~~~~~~f~~~l  293 (444)
T PRK15115        225 QAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR-------DLPKAMARGEFREDL  293 (444)
T ss_pred             EECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC-------CHHHHHHcCCccHHH
Confidence            56778999999999999999999999999876421 1  1 1125678888864       456778888888875

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.50  E-value=9.5e-14  Score=119.11  Aligned_cols=126  Identities=15%  Similarity=0.160  Sum_probs=87.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCC--CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNT--KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNE  156 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~--kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~  156 (247)
                      .++||+.|.+..+ .+-.++.+|..-+  -|.++||+||||||||++|+++|+..        ..|++.+...++     
T Consensus       122 dViGqEeAK~kcr-li~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~--------kvp~l~vkat~l-----  187 (368)
T COG1223         122 DVIGQEEAKRKCR-LIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA--------KVPLLLVKATEL-----  187 (368)
T ss_pred             hhhchHHHHHHHH-HHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc--------CCceEEechHHH-----
Confidence            5999999998653 3444555543111  46789999999999999999998773        358888887665     


Q ss_pred             ChHHHHHHHHHHHHHHHHHh---CCCeEEEEeCCCCCCh------------hhHHHHHhhcccCcccccccCCceEEEEE
Q psy1694         157 NHVSLYRLQLTNWIISNVTA---CDRAIFIFDEVDKFPK------------GLLDVIIPFIDHHAVYNQISFQNTIFLFL  221 (247)
Q Consensus       157 ~~v~~~~~~l~~~~~~~l~~---~~~~vlilDEiek~~~------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~t  221 (247)
                        +++|.+.-..++.+...+   ...+++||||+|.+..            .+.|+||.-||.-.     .-.-+++|..
T Consensus       188 --iGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~-----eneGVvtIaa  260 (368)
T COG1223         188 --IGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK-----ENEGVVTIAA  260 (368)
T ss_pred             --HHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc-----cCCceEEEee
Confidence              344444333444444443   3459999999998754            46788888887532     1234678888


Q ss_pred             eCCC
Q psy1694         222 SNSG  225 (247)
Q Consensus       222 SN~g  225 (247)
                      ||..
T Consensus       261 TN~p  264 (368)
T COG1223         261 TNRP  264 (368)
T ss_pred             cCCh
Confidence            8863

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.50  E-value=2.5e-13  Score=126.79  Aligned_cols=130  Identities=16%  Similarity=0.193  Sum_probs=83.4

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcce------ee------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV------HK------  146 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v------~~------  146 (247)
                      .++||+.++..+.+++....       .|-.++|+||+|||||++|+.+|+.+.+..... ..++-      .+      
T Consensus        19 dvVGQe~iv~~L~~~i~~~r-------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~-~~pCg~C~sC~~i~~g~~~   90 (484)
T PRK14956         19 DVIHQDLAIGALQNALKSGK-------IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG-NEPCNECTSCLEITKGISS   90 (484)
T ss_pred             HHhChHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC-ccccCCCcHHHHHHccCCc
Confidence            49999999998887776421       233589999999999999999999987611000 01110      00      


Q ss_pred             ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         147 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      +.-++.......+...++ +.+.+...-....+.|+||||+++|+.+.++.|++.||+.+       .+++||+++|.
T Consensus        91 dviEIdaas~~gVd~IRe-L~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp-------~~viFILaTte  160 (484)
T PRK14956         91 DVLEIDAASNRGIENIRE-LRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPP-------AHIVFILATTE  160 (484)
T ss_pred             cceeechhhcccHHHHHH-HHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCC-------CceEEEeecCC
Confidence            001111111111222221 12222211123456899999999999999999999999976       78899999876

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.49  E-value=2.3e-13  Score=129.08  Aligned_cols=130  Identities=14%  Similarity=0.177  Sum_probs=85.4

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcc------eee-----
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRF------VHK-----  146 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~------v~~-----  146 (247)
                      .++||+.+++.+.+++....       .|-.++|+||+|||||++|+++|+.+.+.  .+. ..||      ..+     
T Consensus        17 divGq~~v~~~L~~~~~~~~-------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~--~~~~~~pCg~C~~C~~i~~g~~   87 (509)
T PRK14958         17 EVIGQAPVVRALSNALDQQY-------LHHAYLFTGTRGVGKTTISRILAKCLNCE--KGVSANPCNDCENCREIDEGRF   87 (509)
T ss_pred             HhcCCHHHHHHHHHHHHhCC-------CCeeEEEECCCCCCHHHHHHHHHHHhcCC--CCCCcccCCCCHHHHHHhcCCC
Confidence            39999999998888886421       33368999999999999999999998762  111 1111      000     


Q ss_pred             -ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         147 -FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       147 -~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                       +.-+++......++..++. .+.+...-....+.|+||||+|+|+++.++.|++.||+.+       .+++||++||..
T Consensus        88 ~d~~eidaas~~~v~~iR~l-~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp-------~~~~fIlattd~  159 (509)
T PRK14958         88 PDLFEVDAASRTKVEDTREL-LDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPP-------SHVKFILATTDH  159 (509)
T ss_pred             ceEEEEcccccCCHHHHHHH-HHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccC-------CCeEEEEEECCh
Confidence             1111221122233333221 1111111223456899999999999999999999999976       678899988653

>PRK13531 regulatory ATPase RavA; Provisional

Probab=99.49  E-value=9.1e-14  Score=129.56  Aligned_cols=140  Identities=15%  Similarity=0.157  Sum_probs=89.6

Q ss_pred             ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694          67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK  146 (247)
Q Consensus        67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~  146 (247)
                      ..+.++.+.+.+.++|++.+++.+..++.    ...      .++|.||||||||++|+++++....      ..+|...
T Consensus         9 ~~i~~l~~~l~~~i~gre~vI~lll~aal----ag~------hVLL~GpPGTGKT~LAraLa~~~~~------~~~F~~~   72 (498)
T PRK13531          9 ERISRLSSALEKGLYERSHAIRLCLLAAL----SGE------SVFLLGPPGIAKSLIARRLKFAFQN------ARAFEYL   72 (498)
T ss_pred             HHHHHHHHHHhhhccCcHHHHHHHHHHHc----cCC------CEEEECCCChhHHHHHHHHHHHhcc------cCcceee
Confidence            34677889999999999999988776654    222      5799999999999999999887422      1255555


Q ss_pred             ecc-----cccCCCCChHHHH--HHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccc---cCCce
Q psy1694         147 FNS-----RIHFPNENHVSLY--RLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQI---SFQNT  216 (247)
Q Consensus       147 ~~~-----~l~~~~~~~v~~~--~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~---~~~~~  216 (247)
                      .+.     +++++..  +...  .+.+.....+.+..+  .++|+|||+++++..|+.|+++|+++.++.+-   ....-
T Consensus        73 ~~~fttp~DLfG~l~--i~~~~~~g~f~r~~~G~L~~A--~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~r  148 (498)
T PRK13531         73 MTRFSTPEEVFGPLS--IQALKDEGRYQRLTSGYLPEA--EIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMR  148 (498)
T ss_pred             eeeecCcHHhcCcHH--HhhhhhcCchhhhcCCccccc--cEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCc
Confidence            442     2222210  0000  000000111112122  48999999999999999999999998866542   32333


Q ss_pred             EEEEEeCCCh
Q psy1694         217 IFLFLSNSGG  226 (247)
Q Consensus       217 ifI~tSN~g~  226 (247)
                      +++.+||--+
T Consensus       149 fiv~ATN~LP  158 (498)
T PRK13531        149 LLVTASNELP  158 (498)
T ss_pred             EEEEECCCCc
Confidence            5666666433

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.49  E-value=2.5e-13  Score=130.14  Aligned_cols=133  Identities=14%  Similarity=0.161  Sum_probs=86.3

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhcccc---CCC-CCcceee--------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK---DKG-TSRFVHK--------  146 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~---~g~-~~~~v~~--------  146 (247)
                      .++||+.+++.|.+++....       .+-.+||+||+|+|||++|+.+++.+.+...   .+. ..+|-..        
T Consensus        17 dVIGQe~vv~~L~~al~~gR-------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~a   89 (700)
T PRK12323         17 TLVGQEHVVRALTHALEQQR-------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDA   89 (700)
T ss_pred             HHcCcHHHHHHHHHHHHhCC-------CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHc
Confidence            49999999998888887432       2336899999999999999999999876110   110 0111100        


Q ss_pred             ----ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694         147 ----FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  222 (247)
Q Consensus       147 ----~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS  222 (247)
                          +.-+++......++..++.+ +.+...-....+.|+||||+|+|+...+|.||+.||+..       .+++||++|
T Consensus        90 G~hpDviEIdAas~~gVDdIReLi-e~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP-------~~v~FILaT  161 (700)
T PRK12323         90 GRFVDYIEMDAASNRGVDEMAQLL-DKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP-------EHVKFILAT  161 (700)
T ss_pred             CCCCcceEecccccCCHHHHHHHH-HHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC-------CCceEEEEe
Confidence                11111111112233222211 111111123456899999999999999999999999976       788999999


Q ss_pred             CCCh
Q psy1694         223 NSGG  226 (247)
Q Consensus       223 N~g~  226 (247)
                      |...
T Consensus       162 tep~  165 (700)
T PRK12323        162 TDPQ  165 (700)
T ss_pred             CChH
Confidence            8643

>PLN03025 replication factor C subunit; Provisional

Probab=99.49  E-value=3e-13  Score=121.35  Aligned_cols=125  Identities=18%  Similarity=0.237  Sum_probs=82.6

Q ss_pred             cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChH
Q psy1694          80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV  159 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v  159 (247)
                      ++||+.+++.+.+.+.    .+.   .| .++|+||||||||++|+++|+.+++   .+....++.++.+..     ..+
T Consensus        15 ~~g~~~~~~~L~~~~~----~~~---~~-~lll~Gp~G~GKTtla~~la~~l~~---~~~~~~~~eln~sd~-----~~~   78 (319)
T PLN03025         15 IVGNEDAVSRLQVIAR----DGN---MP-NLILSGPPGTGKTTSILALAHELLG---PNYKEAVLELNASDD-----RGI   78 (319)
T ss_pred             hcCcHHHHHHHHHHHh----cCC---Cc-eEEEECCCCCCHHHHHHHHHHHHhc---ccCccceeeeccccc-----ccH
Confidence            8899998887765544    221   23 5789999999999999999999877   443334444444321     112


Q ss_pred             HHHHHHHHHHHHHH--HHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694         160 SLYRLQLTNWIISN--VTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  227 (247)
Q Consensus       160 ~~~~~~l~~~~~~~--l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~  227 (247)
                      +..++.+.......  .......+++|||+|.|+.+.|+.|++.+|+..       ..+.||+++|....
T Consensus        79 ~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~-------~~t~~il~~n~~~~  141 (319)
T PLN03025         79 DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYS-------NTTRFALACNTSSK  141 (319)
T ss_pred             HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhccc-------CCceEEEEeCCccc
Confidence            22222211111110  011245899999999999999999999999754       45678999986543

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=99.49  E-value=2.7e-14  Score=112.96  Aligned_cols=113  Identities=12%  Similarity=0.213  Sum_probs=83.2

Q ss_pred             CChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHH
Q psy1694          81 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVS  160 (247)
Q Consensus        81 ~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~  160 (247)
                      +|++.+++.+.+.+......+.      .++++|++||||+++|+.|+..  +   .....+|+.++|....        
T Consensus         1 vG~S~~~~~l~~~l~~~a~~~~------pvli~GE~GtGK~~~A~~lh~~--~---~~~~~~~~~~~~~~~~--------   61 (138)
T PF14532_consen    1 VGKSPAMRRLRRQLERLAKSSS------PVLITGEPGTGKSLLARALHRY--S---GRANGPFIVIDCASLP--------   61 (138)
T ss_dssp             --SCHHHHHHHHHHHHHHCSSS-------EEEECCTTSSHHHHHHCCHHT--T---TTCCS-CCCCCHHCTC--------
T ss_pred             CCCCHHHHHHHHHHHHHhCCCC------cEEEEcCCCCCHHHHHHHHHhh--c---CccCCCeEEechhhCc--------
Confidence            5899999999999998876555      6799999999999999999553  4   4445678777776531        


Q ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHH
Q psy1694         161 LYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE  228 (247)
Q Consensus       161 ~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~  228 (247)
                                .+.+....+++++|+|+|.++++.|..|...|+..+      -.+.-+|++|....+.
T Consensus        62 ----------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~------~~~~RlI~ss~~~l~~  113 (138)
T PF14532_consen   62 ----------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE------RSNVRLIASSSQDLEE  113 (138)
T ss_dssp             ----------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT------TTTSEEEEEECC-CCC
T ss_pred             ----------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC------CCCeEEEEEeCCCHHH
Confidence                      123444688999999999999999999999998742      1455688888765443

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=99.47  E-value=2.5e-13  Score=125.02  Aligned_cols=138  Identities=12%  Similarity=0.204  Sum_probs=85.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccC--CCCCeEEEEeecCCChHHHHHHHHHHHhhccccC----CCCCc---ceeeecc
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYH--NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD----KGTSR---FVHKFNS  149 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~--~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~----g~~~~---~v~~~~~  149 (247)
                      .|+||+.+++.+.+++.........  ...|-.++|+||+|+|||++|+.+|+.+.+....    |....   +..-+.+
T Consensus         6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp   85 (394)
T PRK07940          6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP   85 (394)
T ss_pred             hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence            4899999999999998754211110  1235579999999999999999999998772100    10000   0011111


Q ss_pred             cccCCCCChHHHHHHHHHHHHHHHHH----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         150 RIHFPNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       150 ~l~~~~~~~v~~~~~~l~~~~~~~l~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      .+.+-.+.......+++...+ ....    ..++.|+||||+|+|++..++.|++.||+++       .+++||++|+.
T Consensus        86 D~~~i~~~~~~i~i~~iR~l~-~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~-------~~~~fIL~a~~  156 (394)
T PRK07940         86 DVRVVAPEGLSIGVDEVRELV-TIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP-------PRTVWLLCAPS  156 (394)
T ss_pred             CEEEeccccccCCHHHHHHHH-HHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC-------CCCeEEEEECC
Confidence            221111110000111222222 2222    2355899999999999999999999999976       66788888876

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.46  E-value=5.2e-13  Score=131.63  Aligned_cols=132  Identities=13%  Similarity=0.171  Sum_probs=86.3

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCccee------------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVH------------  145 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v~------------  145 (247)
                      .++||+.+++.+.+++....       -|-.++|+||+|||||++|+++|+.+++.  .+. ..+|..            
T Consensus        17 dIIGQe~Iv~~LknaI~~~r-------l~HAyLFtGPpGtGKTTLARiLAk~Lnce--~~~~~~pCg~C~sC~~i~~g~~   87 (944)
T PRK14949         17 QMVGQSHVLHALTNALTQQR-------LHHAYLFTGTRGVGKTSLARLFAKGLNCE--QGVTATPCGVCSSCVEIAQGRF   87 (944)
T ss_pred             HhcCcHHHHHHHHHHHHhCC-------CCeEEEEECCCCCCHHHHHHHHHHhccCc--cCCCCCCCCCchHHHHHhcCCC
Confidence            48999999998887776421       23357999999999999999999998762  111 111111            


Q ss_pred             eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       146 ~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                      .++-++.......+...++ +...+...-....+.|+||||+++|+.+.++.||+.||+++       .+++||+++|..
T Consensus        88 ~DviEidAas~~kVDdIRe-Lie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP-------~~vrFILaTTe~  159 (944)
T PRK14949         88 VDLIEVDAASRTKVDDTRE-LLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPP-------EHVKFLLATTDP  159 (944)
T ss_pred             ceEEEeccccccCHHHHHH-HHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccC-------CCeEEEEECCCc
Confidence            0111111111122333332 22222222223567999999999999999999999999976       678888887654


Q ss_pred             hH
Q psy1694         226 GT  227 (247)
Q Consensus       226 ~~  227 (247)
                      ..
T Consensus       160 ~k  161 (944)
T PRK14949        160 QK  161 (944)
T ss_pred             hh
Confidence            43

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.46  E-value=7.1e-13  Score=102.50  Aligned_cols=108  Identities=20%  Similarity=0.301  Sum_probs=77.7

Q ss_pred             EEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCC-CeEEEEeCCC
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACD-RAIFIFDEVD  188 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~-~~vlilDEie  188 (247)
                      ++|+||||||||++|+.+|+.+-        .+++.++++++.....   ......+...+.. ..... .++++|||+|
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~--------~~~~~i~~~~~~~~~~---~~~~~~i~~~~~~-~~~~~~~~vl~iDe~d   68 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG--------FPFIEIDGSELISSYA---GDSEQKIRDFFKK-AKKSAKPCVLFIDEID   68 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT--------SEEEEEETTHHHTSST---THHHHHHHHHHHH-HHHTSTSEEEEEETGG
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc--------cccccccccccccccc---ccccccccccccc-ccccccceeeeeccch
Confidence            58999999999999999999852        3788888887753322   2233344444533 33333 6999999999


Q ss_pred             CCChhh-----------HHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHH
Q psy1694         189 KFPKGL-----------LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFL  234 (247)
Q Consensus       189 k~~~~~-----------~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~  234 (247)
                      .+.+..           ++.|+..++....    ..++.++|+|||. .+.+...+.
T Consensus        69 ~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~----~~~~~~vI~ttn~-~~~i~~~l~  120 (132)
T PF00004_consen   69 KLFPKSQPSSSSFEQRLLNQLLSLLDNPSS----KNSRVIVIATTNS-PDKIDPALL  120 (132)
T ss_dssp             GTSHHCSTSSSHHHHHHHHHHHHHHHTTTT----TSSSEEEEEEESS-GGGSCHHHH
T ss_pred             hcccccccccccccccccceeeeccccccc----ccccceeEEeeCC-hhhCCHhHH
Confidence            998765           8889988887541    1356899999999 666665544

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=99.46  E-value=4.2e-13  Score=117.33  Aligned_cols=127  Identities=14%  Similarity=0.219  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHH
Q psy1694          84 ELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYR  163 (247)
Q Consensus        84 ~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~  163 (247)
                      ++.++.+.+.+..++....      .++|.||||||||++|+.+|+.+ +       .+++.++|..-. .....++.+.
T Consensus         4 t~~~~~l~~~~l~~l~~g~------~vLL~G~~GtGKT~lA~~la~~l-g-------~~~~~i~~~~~~-~~~dllg~~~   68 (262)
T TIGR02640         4 TDAVKRVTSRALRYLKSGY------PVHLRGPAGTGKTTLAMHVARKR-D-------RPVMLINGDAEL-TTSDLVGSYA   68 (262)
T ss_pred             CHHHHHHHHHHHHHHhcCC------eEEEEcCCCCCHHHHHHHHHHHh-C-------CCEEEEeCCccC-CHHHHhhhhc
Confidence            4567777777777666554      57899999999999999998863 3       377877764311 1111111111


Q ss_pred             H----HH-HH---------------HHHHHHH--hCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc-c--------c
Q psy1694         164 L----QL-TN---------------WIISNVT--ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ-I--------S  212 (247)
Q Consensus       164 ~----~l-~~---------------~~~~~l~--~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~-~--------~  212 (247)
                      +    .. ..               +..+.+.  ...++++++||++++++++++.|+++|+++.+... .        -
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~  148 (262)
T TIGR02640        69 GYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDV  148 (262)
T ss_pred             ccchhhHHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEec
Confidence            0    00 00               0001111  23457999999999999999999999998764321 0        1


Q ss_pred             CCceEEEEEeCCC
Q psy1694         213 FQNTIFLFLSNSG  225 (247)
Q Consensus       213 ~~~~ifI~tSN~g  225 (247)
                      ..+..+|+|||..
T Consensus       149 ~~~frvIaTsN~~  161 (262)
T TIGR02640       149 HPEFRVIFTSNPV  161 (262)
T ss_pred             CCCCEEEEeeCCc
Confidence            1355689999975

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=3.1e-13  Score=118.76  Aligned_cols=142  Identities=21%  Similarity=0.295  Sum_probs=100.3

Q ss_pred             ccHHHHHHHHHhhcCChHHHHHHHHHHHHHh----hhcccCCC---CCeEEEEeecCCChHHHHHHHHHHHhhccccCCC
Q psy1694          67 SNVRVLEEQLKQHVHGQELAISHICGALKNH----FQNRYHNT---KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG  139 (247)
Q Consensus        67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~----~~~~~~~~---kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~  139 (247)
                      +....+++.|++.++||+.|...+.=++.+|    .......+   ...++++.||+|+|||++|+.+|+.|.       
T Consensus        50 PtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~Ln-------  122 (408)
T COG1219          50 PTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILN-------  122 (408)
T ss_pred             CChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhC-------
Confidence            4567899999999999999998776555543    11111011   123689999999999999999999964       


Q ss_pred             CCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhC-------CCeEEEEeCCCCCC--------------hhhHHHH
Q psy1694         140 TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTAC-------DRAIFIFDEVDKFP--------------KGLLDVI  198 (247)
Q Consensus       140 ~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~-------~~~vlilDEiek~~--------------~~~~~~L  198 (247)
                       .||.-.++.++  .+.+++++-.+   +.+...++.|       .++++++|||||+.              +++|++|
T Consensus       123 -VPFaiADATtL--TEAGYVGEDVE---NillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQAL  196 (408)
T COG1219         123 -VPFAIADATTL--TEAGYVGEDVE---NILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQAL  196 (408)
T ss_pred             -CCeeeccccch--hhccccchhHH---HHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHH
Confidence             48877777666  56777775433   4444444444       55999999999983              2689999


Q ss_pred             HhhcccCccc--------------ccccCCceEEEEE
Q psy1694         199 IPFIDHHAVY--------------NQISFQNTIFLFL  221 (247)
Q Consensus       199 l~~Le~~~~~--------------~~~~~~~~ifI~t  221 (247)
                      |+.+|.....              ..+|.+|..||+-
T Consensus       197 LKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcg  233 (408)
T COG1219         197 LKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICG  233 (408)
T ss_pred             HHHHcCceeccCCCCCCCCCccceEEEcccceeEEec
Confidence            9999864211              1248888877765

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=99.45  E-value=5.9e-13  Score=129.22  Aligned_cols=131  Identities=12%  Similarity=0.162  Sum_probs=84.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcce------ee-----
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFV------HK-----  146 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v------~~-----  146 (247)
                      .++||+.+++.|.+.+...       +.+-.+||+||+|||||++|+.+++.+++.  .+. ..+|-      .+     
T Consensus        17 EVIGQe~Vv~~L~~aL~~g-------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe--~~~~~~PCG~C~sCr~I~~G~h   87 (830)
T PRK07003         17 SLVGQEHVVRALTHALDGG-------RLHHAYLFTGTRGVGKTTLSRIFAKALNCE--TGVTSQPCGVCRACREIDEGRF   87 (830)
T ss_pred             HHcCcHHHHHHHHHHHhcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcCc--cCCCCCCCcccHHHHHHhcCCC
Confidence            4999999999888777632       123357999999999999999999998761  111 11110      00     


Q ss_pred             -ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         147 -FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       147 -~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                       +.-+++......++..++.+. ..........+.|+||||+|+|+...++.|++.||+..       .+++|||+||..
T Consensus        88 ~DviEIDAas~rgVDdIReLIe-~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP-------~~v~FILaTtd~  159 (830)
T PRK07003         88 VDYVEMDAASNRGVDEMAALLE-RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPP-------PHVKFILATTDP  159 (830)
T ss_pred             ceEEEecccccccHHHHHHHHH-HHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcC-------CCeEEEEEECCh
Confidence             011111111122222222111 11111123456999999999999999999999999976       688999998864


Q ss_pred             h
Q psy1694         226 G  226 (247)
Q Consensus       226 ~  226 (247)
                      .
T Consensus       160 ~  160 (830)
T PRK07003        160 Q  160 (830)
T ss_pred             h
Confidence            3

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=99.44  E-value=8.9e-13  Score=127.40  Aligned_cols=131  Identities=15%  Similarity=0.174  Sum_probs=85.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcceee-----------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVHK-----------  146 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v~~-----------  146 (247)
                      .++||+.+++.+.+.+....       .+-.++|+||+|+|||++|+.+|+.+.+.  .+. ..||-..           
T Consensus        17 divGQe~vv~~L~~~l~~~r-------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~--~~~~~~pCg~C~~C~~i~~g~~   87 (647)
T PRK07994         17 EVVGQEHVLTALANALDLGR-------LHHAYLFSGTRGVGKTTIARLLAKGLNCE--TGITATPCGECDNCREIEQGRF   87 (647)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHhhhhc--cCCCCCCCCCCHHHHHHHcCCC
Confidence            49999999998888776421       23357999999999999999999998772  111 1111100           


Q ss_pred             -ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         147 -FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       147 -~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                       +.-++.......++..++ +.+.+...-....+.|+||||+++|+...++.||+.||+.+       .+++||++||..
T Consensus        88 ~D~ieidaas~~~VddiR~-li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp-------~~v~FIL~Tt~~  159 (647)
T PRK07994         88 VDLIEIDAASRTKVEDTRE-LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-------EHVKFLLATTDP  159 (647)
T ss_pred             CCceeecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCC-------CCeEEEEecCCc
Confidence             011111111122333332 22222222223467899999999999999999999999976       677888887753


Q ss_pred             h
Q psy1694         226 G  226 (247)
Q Consensus       226 ~  226 (247)
                      .
T Consensus       160 ~  160 (647)
T PRK07994        160 Q  160 (647)
T ss_pred             c
Confidence            3

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=6e-13  Score=118.56  Aligned_cols=129  Identities=16%  Similarity=0.256  Sum_probs=90.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .+-|-+..++.+++++.--+.++.     .-+-|..+||+||||||||++|+++|++.-        ..|+++.-|++  
T Consensus       152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--------AtFIrvvgSEl--  221 (406)
T COG1222         152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--------ATFIRVVGSEL--  221 (406)
T ss_pred             hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC--------ceEEEeccHHH--
Confidence            477889999999999874333221     123466899999999999999999998842        47888876665  


Q ss_pred             CCCChHHHHHHHHHHHHHHHHH---hCCCeEEEEeCCCCC-----------ChhhHHHHHhhcccCccccccc-CCceEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNVT---ACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQIS-FQNTIF  218 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~---~~~~~vlilDEiek~-----------~~~~~~~Ll~~Le~~~~~~~~~-~~~~if  218 (247)
                           +..|-+.=...+++.+.   ....+++||||||.+           +.++|..++++|.+   -|+.| -.|.-+
T Consensus       222 -----VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~q---lDGFD~~~nvKV  293 (406)
T COG1222         222 -----VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQ---LDGFDPRGNVKV  293 (406)
T ss_pred             -----HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHh---ccCCCCCCCeEE
Confidence                 45554422223333333   344599999999876           33789999999876   34433 346778


Q ss_pred             EEEeCCC
Q psy1694         219 LFLSNSG  225 (247)
Q Consensus       219 I~tSN~g  225 (247)
                      |+.||..
T Consensus       294 I~ATNR~  300 (406)
T COG1222         294 IMATNRP  300 (406)
T ss_pred             EEecCCc
Confidence            9999873

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.43  E-value=6.2e-13  Score=131.70  Aligned_cols=156  Identities=19%  Similarity=0.286  Sum_probs=106.2

Q ss_pred             cccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee
Q psy1694          66 SSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH  145 (247)
Q Consensus        66 ~~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~  145 (247)
                      ..++...++.|++..+|.+.+++.+.+.+......+. . ++-.++|.||||+|||++++.+++.+..        +|+.
T Consensus       310 ~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~-~-~g~~i~l~GppG~GKTtl~~~ia~~l~~--------~~~~  379 (784)
T PRK10787        310 KKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNK-I-KGPILCLVGPPGVGKTSLGQSIAKATGR--------KYVR  379 (784)
T ss_pred             cccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhccc-C-CCceEEEECCCCCCHHHHHHHHHHHhCC--------CEEE
Confidence            3567788999999999999999999887764332221 1 2235889999999999999999988533        5666


Q ss_pred             eecccc------cCCCCChHHHHHHHHHHHHHHHHHh--CCCeEEEEeCCCCCChhh----HHHHHhhcccCc---ccc-
Q psy1694         146 KFNSRI------HFPNENHVSLYRLQLTNWIISNVTA--CDRAIFIFDEVDKFPKGL----LDVIIPFIDHHA---VYN-  209 (247)
Q Consensus       146 ~~~~~l------~~~~~~~v~~~~~~l~~~~~~~l~~--~~~~vlilDEiek~~~~~----~~~Ll~~Le~~~---~~~-  209 (247)
                      +.++..      .++...    |.+.+.+.+...+..  +..++++|||+|++++..    ++.|+++||+.+   +.+ 
T Consensus       380 i~~~~~~d~~~i~g~~~~----~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~  455 (784)
T PRK10787        380 MALGGVRDEAEIRGHRRT----YIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDH  455 (784)
T ss_pred             EEcCCCCCHHHhccchhc----cCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecc
Confidence            664332      111111    221222233333333  345899999999999865    699999999743   222 


Q ss_pred             ----cccCCceEEEEEeCCChHHHHHHHHHHH
Q psy1694         210 ----QISFQNTIFLFLSNSGGTEIMNTFLELR  237 (247)
Q Consensus       210 ----~~~~~~~ifI~tSN~g~~~i~~~~~~~~  237 (247)
                          ..|.++++||+|+|.-  .|...+++.+
T Consensus       456 ~~~~~~dls~v~~i~TaN~~--~i~~aLl~R~  485 (784)
T PRK10787        456 YLEVDYDLSDVMFVATSNSM--NIPAPLLDRM  485 (784)
T ss_pred             cccccccCCceEEEEcCCCC--CCCHHHhcce
Confidence                3588999999999975  2666655543

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.43  E-value=1.6e-12  Score=124.67  Aligned_cols=130  Identities=18%  Similarity=0.218  Sum_probs=86.9

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcc------ee------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRF------VH------  145 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~------v~------  145 (247)
                      .++||+.+++.|.+.+...       +.|-.++|+||+|||||++|+++|+.+++.  .+. ..||      ..      
T Consensus        14 eivGq~~i~~~L~~~i~~~-------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~--~~~~~~pCg~C~~C~~i~~~~~   84 (584)
T PRK14952         14 EVVGQEHVTEPLSSALDAG-------RINHAYLFSGPRGCGKTSSARILARSLNCA--QGPTATPCGVCESCVALAPNGP   84 (584)
T ss_pred             HhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhccc--cCCCCCcccccHHHHHhhcccC
Confidence            3899999999888877631       134468999999999999999999998862  111 0111      11      


Q ss_pred             --eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694         146 --KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  223 (247)
Q Consensus       146 --~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN  223 (247)
                        .+.-+++......++..++ +.+.....-....+.|+||||++.|..+.++.|++.||+.+       .+++|||+++
T Consensus        85 ~~~dvieidaas~~gvd~iRe-l~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp-------~~~~fIL~tt  156 (584)
T PRK14952         85 GSIDVVELDAASHGGVDDTRE-LRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPP-------EHLIFIFATT  156 (584)
T ss_pred             CCceEEEeccccccCHHHHHH-HHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCC-------CCeEEEEEeC
Confidence              1111222222223443322 22223222234567999999999999999999999999976       7889999885


Q ss_pred             CC
Q psy1694         224 SG  225 (247)
Q Consensus       224 ~g  225 (247)
                      ..
T Consensus       157 e~  158 (584)
T PRK14952        157 EP  158 (584)
T ss_pred             Ch
Confidence            53

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=99.43  E-value=1.4e-13  Score=128.99  Aligned_cols=146  Identities=13%  Similarity=0.187  Sum_probs=100.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc-------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI-------  151 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l-------  151 (247)
                      .++|.++++..+.+.+........      .+++.|++||||+++|+++++.  +   .+...+|+.++|+.+       
T Consensus       135 ~lig~s~~~~~v~~~i~~~a~~~~------~vli~Ge~GtGK~~~A~~ih~~--~---~~~~~~~~~~~c~~~~~~~~~~  203 (463)
T TIGR01818       135 ELIGEAPAMQEVFRAIGRLSRSDI------TVLINGESGTGKELVARALHRH--S---PRANGPFIALNMAAIPKDLIES  203 (463)
T ss_pred             ceeecCHHHHHHHHHHHHHhCcCC------eEEEECCCCCCHHHHHHHHHHh--C---CCCCCCeEEEeCCCCCHHHHHH
Confidence            488888899888888876543333      6899999999999999999654  4   445679999998765       


Q ss_pred             --cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc--c--ccCCceEEEEEeCCC
Q psy1694         152 --HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--Q--ISFQNTIFLFLSNSG  225 (247)
Q Consensus       152 --~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~--~--~~~~~~ifI~tSN~g  225 (247)
                        ++...+.   |.+... ...+.+..+.++++|||||+.+|+.+|.+|+++|+++.+..  +  ....++-+|++||..
T Consensus       204 ~lfg~~~~~---~~~~~~-~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~  279 (463)
T TIGR01818       204 ELFGHEKGA---FTGANT-RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN  279 (463)
T ss_pred             HhcCCCCCC---CCCccc-CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence              1211111   111000 01134556778999999999999999999999999876432  1  111245588888654


Q ss_pred             hHHHHHHHHHHHHcCcccccC
Q psy1694         226 GTEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       226 ~~~i~~~~~~~~~~g~~Re~~  246 (247)
                             +.++.++|.+|+||
T Consensus       280 -------l~~~~~~~~f~~~L  293 (463)
T TIGR01818       280 -------LEALVRQGKFREDL  293 (463)
T ss_pred             -------HHHHHHcCCcHHHH
Confidence                   44566777887764

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=99.43  E-value=1.3e-12  Score=129.75  Aligned_cols=130  Identities=18%  Similarity=0.197  Sum_probs=85.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcc------ee------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRF------VH------  145 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~------v~------  145 (247)
                      .|+||+.+++.|.+.+..-.       .+-.+||+||+|||||++|++||+.|++.  .+. ..+|      ..      
T Consensus        16 eiiGqe~v~~~L~~~i~~~r-------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~--~~~~~~pCg~C~sC~~~~~g~~   86 (824)
T PRK07764         16 EVIGQEHVTEPLSTALDSGR-------INHAYLFSGPRGCGKTSSARILARSLNCV--EGPTSTPCGECDSCVALAPGGP   86 (824)
T ss_pred             HhcCcHHHHHHHHHHHHhCC-------CCceEEEECCCCCCHHHHHHHHHHHhCcc--cCCCCCCCcccHHHHHHHcCCC
Confidence            49999999998888876421       23358999999999999999999999762  111 1111      11      


Q ss_pred             --eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694         146 --KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  223 (247)
Q Consensus       146 --~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN  223 (247)
                        .+..++.......++..++ +...+...-....+.|+||||+|+|+...++.|+++||+..       .+++|||++|
T Consensus        87 ~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP-------~~~~fIl~tt  158 (824)
T PRK07764         87 GSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP-------EHLKFIFATT  158 (824)
T ss_pred             CCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC-------CCeEEEEEeC
Confidence              1111121111122332222 22222111223467999999999999999999999999976       7889999986


Q ss_pred             CC
Q psy1694         224 SG  225 (247)
Q Consensus       224 ~g  225 (247)
                      ..
T Consensus       159 ~~  160 (824)
T PRK07764        159 EP  160 (824)
T ss_pred             Ch
Confidence            53

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.41  E-value=1.7e-12  Score=118.45  Aligned_cols=126  Identities=16%  Similarity=0.241  Sum_probs=80.9

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee------------e
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH------------K  146 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~------------~  146 (247)
                      .++||+.+++.+.+++...       +-|-.++|+||+|+|||++|+.+|+.+.+.. .....|+-.            .
T Consensus        17 ~iiGq~~~~~~l~~~~~~~-------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~-~~~~~pc~~c~~c~~~~~~~~~   88 (363)
T PRK14961         17 DIIGQKHIVTAISNGLSLG-------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQN-GITSNPCRKCIICKEIEKGLCL   88 (363)
T ss_pred             hccChHHHHHHHHHHHHcC-------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHhcCCCC
Confidence            4899999999888777632       1233579999999999999999999987510 001112110            0


Q ss_pred             ecccccCCCCChHHHHHHHHHHHHHHHHHh----CCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694         147 FNSRIHFPNENHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  222 (247)
Q Consensus       147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~----~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS  222 (247)
                      +.-++.......+...    .. +...+..    ..+.++||||+++|+...++.|++.+++.+       .++.||+++
T Consensus        89 d~~~~~~~~~~~v~~i----r~-i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~-------~~~~fIl~t  156 (363)
T PRK14961         89 DLIEIDAASRTKVEEM----RE-ILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPP-------QHIKFILAT  156 (363)
T ss_pred             ceEEecccccCCHHHH----HH-HHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCC-------CCeEEEEEc
Confidence            1111111111222222    21 2222222    245799999999999999999999999965       577888887


Q ss_pred             CC
Q psy1694         223 NS  224 (247)
Q Consensus       223 N~  224 (247)
                      |.
T Consensus       157 ~~  158 (363)
T PRK14961        157 TD  158 (363)
T ss_pred             CC
Confidence            64

>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=99.41  E-value=3.7e-13  Score=117.53  Aligned_cols=150  Identities=13%  Similarity=0.183  Sum_probs=107.0

Q ss_pred             HHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694          76 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN  155 (247)
Q Consensus        76 L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~  155 (247)
                      |++.+--..++.....+++.+.+....   .|  +++.||+|.||+++|+.|-+.-..  .....++||.+||.++-+..
T Consensus       182 lksgiatrnp~fnrmieqierva~rsr---~p--~ll~gptgagksflarriyelk~a--rhq~sg~fvevncatlrgd~  254 (531)
T COG4650         182 LKSGIATRNPHFNRMIEQIERVAIRSR---AP--ILLNGPTGAGKSFLARRIYELKQA--RHQFSGAFVEVNCATLRGDT  254 (531)
T ss_pred             HHhcccccChHHHHHHHHHHHHHhhcc---CC--eEeecCCCcchhHHHHHHHHHHHH--HHhcCCceEEEeeeeecCch
Confidence            455677788888888899988764332   33  689999999999999998443111  13346799999997764433


Q ss_pred             ---------CChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccc-ccc------cCCceEEE
Q psy1694         156 ---------ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY-NQI------SFQNTIFL  219 (247)
Q Consensus       156 ---------~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~-~~~------~~~~~ifI  219 (247)
                               ++.   |++.-.. -.+.+..++++++|+|||+.+..+-|.+|++.+|+.++. .+.      ||.  .+-
T Consensus       255 amsalfghvkga---ftga~~~-r~gllrsadggmlfldeigelgadeqamllkaieekrf~pfgsdr~v~sdfq--lia  328 (531)
T COG4650         255 AMSALFGHVKGA---FTGARES-REGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQ--LIA  328 (531)
T ss_pred             HHHHHHhhhccc---cccchhh-hhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhccCCCCCccccccchH--Hhh
Confidence                     333   3222222 336778889999999999999999999999999997642 221      332  222


Q ss_pred             EEeCCChHHHHHHHHHHHHcCcccccC
Q psy1694         220 FLSNSGGTEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       220 ~tSN~g~~~i~~~~~~~~~~g~~Re~~  246 (247)
                      .|        .+.+.+.+..|+|||||
T Consensus       329 gt--------vrdlrq~vaeg~fredl  347 (531)
T COG4650         329 GT--------VRDLRQLVAEGKFREDL  347 (531)
T ss_pred             hh--------HHHHHHHHhccchHHHH
Confidence            23        57788888999999996

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.41  E-value=1.1e-12  Score=118.39  Aligned_cols=106  Identities=24%  Similarity=0.349  Sum_probs=69.5

Q ss_pred             hcCChHHHHH---HHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694          79 HVHGQELAIS---HICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN  155 (247)
Q Consensus        79 ~l~Gq~~a~~---~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~  155 (247)
                      .++||...+-   .+.+++..    .    +...++|+||||||||++|+.||...-        .+|..++...     
T Consensus        25 e~vGQ~HLlg~~~~lrr~v~~----~----~l~SmIl~GPPG~GKTTlA~liA~~~~--------~~f~~~sAv~-----   83 (436)
T COG2256          25 EVVGQEHLLGEGKPLRRAVEA----G----HLHSMILWGPPGTGKTTLARLIAGTTN--------AAFEALSAVT-----   83 (436)
T ss_pred             HhcChHhhhCCCchHHHHHhc----C----CCceeEEECCCCCCHHHHHHHHHHhhC--------CceEEecccc-----
Confidence            4888876552   23333332    1    222589999999999999999998742        3677665322     


Q ss_pred             CChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcc
Q psy1694         156 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV  207 (247)
Q Consensus       156 ~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~  207 (247)
                       ..+...+..++..- .......+.++|+|||++++...|+.|||.+|++.+
T Consensus        84 -~gvkdlr~i~e~a~-~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~i  133 (436)
T COG2256          84 -SGVKDLREIIEEAR-KNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTI  133 (436)
T ss_pred             -ccHHHHHHHHHHHH-HHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeE
Confidence             11222232222221 122223468999999999999999999999999864

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.41  E-value=2.1e-12  Score=121.53  Aligned_cols=129  Identities=16%  Similarity=0.209  Sum_probs=83.4

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCC-Ccc------------ee
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT-SRF------------VH  145 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~-~~~------------v~  145 (247)
                      .++||+.+++.+.+++...    .   -|-.++|+||+|+|||++|+++|+.+.+.  .+.. .|+            .+
T Consensus        14 dliGQe~vv~~L~~a~~~~----r---i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~--~~~~~~pCg~C~~C~~i~~~~~   84 (491)
T PRK14964         14 DLVGQDVLVRILRNAFTLN----K---IPQSILLVGASGVGKTTCARIISLCLNCS--NGPTSDPCGTCHNCISIKNSNH   84 (491)
T ss_pred             HhcCcHHHHHHHHHHHHcC----C---CCceEEEECCCCccHHHHHHHHHHHHcCc--CCCCCCCccccHHHHHHhccCC
Confidence            3999999998887776532    1   23368999999999999999999988652  1110 111            01


Q ss_pred             eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       146 ~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      .+.-+++......++..++.+ +.....-....+.++||||++.|+...++.|++.||+.+       ..++|||++|.
T Consensus        85 ~Dv~eidaas~~~vddIR~Ii-e~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp-------~~v~fIlatte  155 (491)
T PRK14964         85 PDVIEIDAASNTSVDDIKVIL-ENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPA-------PHVKFILATTE  155 (491)
T ss_pred             CCEEEEecccCCCHHHHHHHH-HHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCC-------CCeEEEEEeCC
Confidence            111122222122233222211 111111112456899999999999999999999999976       67899999864

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=99.41  E-value=1.9e-12  Score=118.77  Aligned_cols=75  Identities=19%  Similarity=0.232  Sum_probs=56.9

Q ss_pred             ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcc----c--CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCC
Q psy1694          67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNR----Y--HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT  140 (247)
Q Consensus        67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~----~--~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~  140 (247)
                      ...+.+.+.|++.++||+.|++.+..++..++...    .  .+..|..++|.||||+|||++|+.||+.+.        
T Consensus         4 ~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~--------   75 (443)
T PRK05201          4 LTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN--------   75 (443)
T ss_pred             CCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC--------
Confidence            35678889999999999999999999987632111    1  022466899999999999999999999853        


Q ss_pred             Ccceeeecc
Q psy1694         141 SRFVHKFNS  149 (247)
Q Consensus       141 ~~~v~~~~~  149 (247)
                      .||+.++++
T Consensus        76 ~~fi~vD~t   84 (443)
T PRK05201         76 APFIKVEAT   84 (443)
T ss_pred             Chheeecch
Confidence            255655543

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=99.41  E-value=1.4e-12  Score=106.20  Aligned_cols=127  Identities=17%  Similarity=0.309  Sum_probs=78.7

Q ss_pred             ChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC--------------CCcceeee
Q psy1694          82 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG--------------TSRFVHKF  147 (247)
Q Consensus        82 Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~--------------~~~~v~~~  147 (247)
                      ||+.+.+.+.+.+...       +-|-.++|+||+|+||+++|..+|+.+++......              ..|-+...
T Consensus         1 gq~~~~~~L~~~~~~~-------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~   73 (162)
T PF13177_consen    1 GQEEIIELLKNLIKSG-------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIII   73 (162)
T ss_dssp             S-HHHHHHHHHHHHCT-------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEE
T ss_pred             CcHHHHHHHHHHHHcC-------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEE
Confidence            7888888887777642       13446899999999999999999999988321110              01111111


Q ss_pred             cccccCCCCC----hHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694         148 NSRIHFPNEN----HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  223 (247)
Q Consensus       148 ~~~l~~~~~~----~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN  223 (247)
                           .+...    .++..+ .+.+.+...-...++.|+||||+|+|....+++||+.||+++       .+++||++|+
T Consensus        74 -----~~~~~~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp-------~~~~fiL~t~  140 (162)
T PF13177_consen   74 -----KPDKKKKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPP-------ENTYFILITN  140 (162)
T ss_dssp             -----ETTTSSSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTT-------TTEEEEEEES
T ss_pred             -----ecccccchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCC-------CCEEEEEEEC
Confidence                 01111    122111 111111111112356899999999999999999999999987       8999999998


Q ss_pred             CChHH
Q psy1694         224 SGGTE  228 (247)
Q Consensus       224 ~g~~~  228 (247)
                      .....
T Consensus       141 ~~~~i  145 (162)
T PF13177_consen  141 NPSKI  145 (162)
T ss_dssp             -GGGS
T ss_pred             ChHHC
Confidence            75543

...

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.40  E-value=2.8e-12  Score=123.30  Aligned_cols=131  Identities=15%  Similarity=0.177  Sum_probs=84.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcce------e------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFV------H------  145 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v------~------  145 (247)
                      .++||+.+.+.+.+++.+.       +.+-.++|+||+|+|||++|+++|+.+.+.  .+. ..+|-      .      
T Consensus        16 dVIGQe~vv~~L~~aI~~g-------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~--~~~~~~pCg~C~sC~~I~~g~h   86 (702)
T PRK14960         16 ELVGQNHVSRALSSALERG-------RLHHAYLFTGTRGVGKTTIARILAKCLNCE--TGVTSTPCEVCATCKAVNEGRF   86 (702)
T ss_pred             HhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhCCC--cCCCCCCCccCHHHHHHhcCCC
Confidence            4999999998888877632       123368999999999999999999998651  111 01110      0      


Q ss_pred             eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       146 ~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                      .+.-+++......++..++.+ ......-...++.|+||||+++|+...++.|++.||+.+       .++.||+++|..
T Consensus        87 pDviEIDAAs~~~VddIReli-~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP-------~~v~FILaTtd~  158 (702)
T PRK14960         87 IDLIEIDAASRTKVEDTRELL-DNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP-------EHVKFLFATTDP  158 (702)
T ss_pred             CceEEecccccCCHHHHHHHH-HHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC-------CCcEEEEEECCh
Confidence            001111111122233232211 111111223456899999999999999999999999976       677899988754


Q ss_pred             h
Q psy1694         226 G  226 (247)
Q Consensus       226 ~  226 (247)
                      .
T Consensus       159 ~  159 (702)
T PRK14960        159 Q  159 (702)
T ss_pred             H
Confidence            3

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=99.40  E-value=1.2e-12  Score=125.03  Aligned_cols=120  Identities=18%  Similarity=0.280  Sum_probs=78.7

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccc--cCCCCCcceeeecccccCCCC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY--KDKGTSRFVHKFNSRIHFPNE  156 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~--~~g~~~~~v~~~~~~l~~~~~  156 (247)
                      .++||+.+++.+..++.    .    ..|..++|+||||||||++|+++++..-.+.  ......+|+.++|....+.+.
T Consensus        66 ~iiGqs~~i~~l~~al~----~----~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~  137 (531)
T TIGR02902        66 EIIGQEEGIKALKAALC----G----PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDER  137 (531)
T ss_pred             HeeCcHHHHHHHHHHHh----C----CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCcc
Confidence            48999999988876542    1    1334679999999999999999976532100  011146899999864211111


Q ss_pred             Ch----HH-----HHHHH--H-----HHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694         157 NH----VS-----LYRLQ--L-----TNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA  206 (247)
Q Consensus       157 ~~----v~-----~~~~~--l-----~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~  206 (247)
                      ..    ++     .|++.  +     ...-.+.+..+.++++||||+++|++..|++|+++|+++.
T Consensus       138 ~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~  203 (531)
T TIGR02902       138 GIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRK  203 (531)
T ss_pred             ccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCe
Confidence            00    00     01100  0     0011245667888999999999999999999999999864

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.39  E-value=3.6e-12  Score=122.87  Aligned_cols=131  Identities=15%  Similarity=0.193  Sum_probs=82.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccC---CC-CCcc------eee--
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD---KG-TSRF------VHK--  146 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~---g~-~~~~------v~~--  146 (247)
                      .++||+.+++.|.+.+....       .|-.++|+||+|+|||++|+++|+.+++....   +. ..||      ..+  
T Consensus        17 dviGQe~vv~~L~~~l~~~r-------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~   89 (618)
T PRK14951         17 EMVGQEHVVQALTNALTQQR-------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDS   89 (618)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHc
Confidence            38899999988888776421       33368999999999999999999998861101   00 0111      000  


Q ss_pred             ----ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694         147 ----FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  222 (247)
Q Consensus       147 ----~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS  222 (247)
                          +.-+++......++..++.+ +.....-....+.|+||||+|+|+...++.|++.||+.+       .+++|||+|
T Consensus        90 g~h~D~~eldaas~~~Vd~iReli-~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP-------~~~~fIL~T  161 (618)
T PRK14951         90 GRFVDYTELDAASNRGVDEVQQLL-EQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPP-------EYLKFVLAT  161 (618)
T ss_pred             CCCCceeecCcccccCHHHHHHHH-HHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCC-------CCeEEEEEE
Confidence                11111111111222222211 111111112346899999999999999999999999976       678888888


Q ss_pred             CC
Q psy1694         223 NS  224 (247)
Q Consensus       223 N~  224 (247)
                      |.
T Consensus       162 td  163 (618)
T PRK14951        162 TD  163 (618)
T ss_pred             CC
Confidence            64

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.39  E-value=6.2e-12  Score=118.28  Aligned_cols=126  Identities=17%  Similarity=0.246  Sum_probs=80.2

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC----------------CCc
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG----------------TSR  142 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~----------------~~~  142 (247)
                      .++||+.+.+.+.+.+..    +   +-|..++|+||||||||++|+++|+.+.+......                ...
T Consensus        15 divGq~~i~~~L~~~i~~----~---~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d   87 (472)
T PRK14962         15 EVVGQDHVKKLIINALKK----N---SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD   87 (472)
T ss_pred             HccCcHHHHHHHHHHHHc----C---CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence            499999998777766553    2   13446899999999999999999999865110000                001


Q ss_pred             ceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694         143 FVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  222 (247)
Q Consensus       143 ~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS  222 (247)
                      ++.++.     .....+...+. +.+.....-....+.++|+||++.+....++.|++.|++..       .+++||+++
T Consensus        88 v~el~a-----a~~~gid~iR~-i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~-------~~vv~Ilat  154 (472)
T PRK14962         88 VIELDA-----ASNRGIDEIRK-IRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPP-------SHVVFVLAT  154 (472)
T ss_pred             cEEEeC-----cccCCHHHHHH-HHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCC-------CcEEEEEEe
Confidence            222221     11122232221 22222111112346899999999999999999999999865       577888887


Q ss_pred             CC
Q psy1694         223 NS  224 (247)
Q Consensus       223 N~  224 (247)
                      |.
T Consensus       155 tn  156 (472)
T PRK14962        155 TN  156 (472)
T ss_pred             CC
Confidence            73

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.38  E-value=2.9e-12  Score=123.38  Aligned_cols=130  Identities=18%  Similarity=0.202  Sum_probs=86.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcc------e------e
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRF------V------H  145 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~------v------~  145 (247)
                      .++||+.+++.+.+++...       +-|-.++|+||+|+|||++|+++|+.+++.  .+. ..+|      .      +
T Consensus        17 ~iiGq~~v~~~L~~~i~~~-------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~--~~~~~~~c~~c~~c~~i~~g~~   87 (576)
T PRK14965         17 DLTGQEHVSRTLQNAIDTG-------RVAHAFLFTGARGVGKTSTARILAKALNCE--QGLTAEPCNVCPPCVEITEGRS   87 (576)
T ss_pred             HccCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHhhcCC--CCCCCCCCCccHHHHHHhcCCC
Confidence            4999999998888877642       133368999999999999999999998762  111 0111      0      1


Q ss_pred             eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       146 ~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                      .+.-++.+.....++..++ +...+...-....+.|+||||+++|+.+.++.|++.||+.+       .+++|||+||..
T Consensus        88 ~d~~eid~~s~~~v~~ir~-l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp-------~~~~fIl~t~~~  159 (576)
T PRK14965         88 VDVFEIDGASNTGVDDIRE-LRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPP-------PHVKFIFATTEP  159 (576)
T ss_pred             CCeeeeeccCccCHHHHHH-HHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCC-------CCeEEEEEeCCh
Confidence            1111222222222332222 22222211223456899999999999999999999999976       688999998754

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.38  E-value=3.9e-12  Score=121.15  Aligned_cols=130  Identities=15%  Similarity=0.189  Sum_probs=82.7

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee------e-----
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK------F-----  147 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~------~-----  147 (247)
                      .++||+.+++.+.+++...-       .|-.++|+||+|+|||++|+.+|+.+.+.. .....++-..      .     
T Consensus        17 diiGq~~~v~~L~~~i~~~r-------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~-~~~~~pCg~C~sC~~i~~~~~~   88 (546)
T PRK14957         17 EVAGQQHALNSLVHALETQK-------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKT-GVTAEPCNKCENCVAINNNSFI   88 (546)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHHhCCCC-CCCCCCCcccHHHHHHhcCCCC
Confidence            48999999998887776421       233589999999999999999999987511 0001111100      0     


Q ss_pred             -cccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         148 -NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       148 -~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                       .-++.......+...++ +.+.+...-....+.|+||||+++|+.+.++.|++.||+++       ..++||++|+.
T Consensus        89 dlieidaas~~gvd~ir~-ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp-------~~v~fIL~Ttd  158 (546)
T PRK14957         89 DLIEIDAASRTGVEETKE-ILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPP-------EYVKFILATTD  158 (546)
T ss_pred             ceEEeecccccCHHHHHH-HHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCC-------CCceEEEEECC
Confidence             00111111112222222 22222222233467899999999999999999999999976       67788887764

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.38  E-value=4.2e-12  Score=122.00  Aligned_cols=132  Identities=14%  Similarity=0.152  Sum_probs=83.9

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee------------e
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH------------K  146 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~------------~  146 (247)
                      .++||+.+++.+.+++...-       .+-.++|+||+|||||++|+.+|+.+++.. .....+|-.            .
T Consensus        17 dIiGQe~v~~~L~~ai~~~r-------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~-~~~~~pCg~C~sC~~i~~g~hp   88 (624)
T PRK14959         17 EVAGQETVKAILSRAAQENR-------VAPAYLFSGTRGVGKTTIARIFAKALNCET-APTGEPCNTCEQCRKVTQGMHV   88 (624)
T ss_pred             HhcCCHHHHHHHHHHHHcCC-------CCceEEEECCCCCCHHHHHHHHHHhccccC-CCCCCCCcccHHHHHHhcCCCC
Confidence            38999999888887776321       223689999999999999999999987610 000111110            0


Q ss_pred             ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694         147 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  226 (247)
Q Consensus       147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~  226 (247)
                      +..++.......++..+ .+.+.+...-....+.||||||+++|+...++.|+++||+..       .+++||++||...
T Consensus        89 Dv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~-------~~~ifILaTt~~~  160 (624)
T PRK14959         89 DVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPP-------ARVTFVLATTEPH  160 (624)
T ss_pred             ceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccC-------CCEEEEEecCChh
Confidence            11111111111222222 122222222223456899999999999999999999999865       6788999887543

>PRK10365 transcriptional regulatory protein ZraR; Provisional

Probab=99.38  E-value=4.5e-13  Score=124.61  Aligned_cols=145  Identities=12%  Similarity=0.136  Sum_probs=94.8

Q ss_pred             cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc-------
Q psy1694          80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH-------  152 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~-------  152 (247)
                      ++|.+..+..+.+.+........      .++++|++||||+++|++++.  .+   .+...||+.++|+.+.       
T Consensus       141 lig~s~~~~~~~~~i~~~~~~~~------~vli~ge~g~gk~~~a~~ih~--~s---~~~~~~~i~~~c~~~~~~~~~~~  209 (441)
T PRK10365        141 MVGKSPAMQHLLSEIALVAPSEA------TVLIHGDSGTGKELVARAIHA--SS---ARSEKPLVTLNCAALNESLLESE  209 (441)
T ss_pred             eEecCHHHHHHHHHHhhccCCCC------eEEEEecCCCCHHHHHHHHHH--cC---CCCCCCeeeeeCCCCCHHHHHHH
Confidence            67777777777766654433222      578899999999999999944  35   5556799999997652       


Q ss_pred             --CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc-cc---cCCceEEEEEeCCCh
Q psy1694         153 --FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-QI---SFQNTIFLFLSNSGG  226 (247)
Q Consensus       153 --~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-~~---~~~~~ifI~tSN~g~  226 (247)
                        +...+.+   .+. .....+.+..+.++++|||||+.||+..|.+|+++++++.+.. +.   -..++.+|++|+.. 
T Consensus       210 lfg~~~~~~---~~~-~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~-  284 (441)
T PRK10365        210 LFGHEKGAF---TGA-DKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD-  284 (441)
T ss_pred             hcCCCCCCc---CCC-CcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCC-
Confidence              1111100   000 0001133566778999999999999999999999999976432 10   01134577777553 


Q ss_pred             HHHHHHHHHHHHcCcccccC
Q psy1694         227 TEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       227 ~~i~~~~~~~~~~g~~Re~~  246 (247)
                            +.+....|++|+|+
T Consensus       285 ------~~~~~~~~~~~~~l  298 (441)
T PRK10365        285 ------LAAEVNAGRFRQDL  298 (441)
T ss_pred             ------HHHHHHcCCchHHH
Confidence                  34556677777654

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=99.37  E-value=4.4e-12  Score=119.96  Aligned_cols=131  Identities=20%  Similarity=0.265  Sum_probs=82.8

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccC--CC-CCcc------e-----
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD--KG-TSRF------V-----  144 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~--g~-~~~~------v-----  144 (247)
                      .++||+.+++.+.+++....       .|-.++|+||+|||||++|+++|+.+.+....  +. ..++      .     
T Consensus        22 dliGq~~vv~~L~~ai~~~r-------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~   94 (507)
T PRK06645         22 ELQGQEVLVKVLSYTILNDR-------LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH   94 (507)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-------CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence            48999999998887776421       23368999999999999999999998662100  00 0010      0     


Q ss_pred             -eeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694         145 -HKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  223 (247)
Q Consensus       145 -~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN  223 (247)
                       +.++-+++......++..++.+.. ....-....+.++||||++.++...++.|++.|++.+       .+++||+++|
T Consensus        95 ~h~Dv~eidaas~~~vd~Ir~iie~-a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp-------~~~vfI~aTt  166 (507)
T PRK06645         95 NHPDIIEIDAASKTSVDDIRRIIES-AEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPP-------PHIIFIFATT  166 (507)
T ss_pred             CCCcEEEeeccCCCCHHHHHHHHHH-HHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcC-------CCEEEEEEeC
Confidence             111112221122223323222211 1111112356899999999999999999999999875       6788888875


Q ss_pred             C
Q psy1694         224 S  224 (247)
Q Consensus       224 ~  224 (247)
                      .
T Consensus       167 e  167 (507)
T PRK06645        167 E  167 (507)
T ss_pred             C
Confidence            4

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.37  E-value=4.8e-12  Score=120.66  Aligned_cols=126  Identities=15%  Similarity=0.232  Sum_probs=82.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcceee-----------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVHK-----------  146 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v~~-----------  146 (247)
                      .++||+.+++.+.+++...-       .|-.++|+||+|+|||++|+.+|+.+.+.  .+. ..|+-..           
T Consensus        17 divGq~~v~~~L~~~i~~~~-------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~--~~~~~~pcg~C~~C~~i~~~~~   87 (527)
T PRK14969         17 ELVGQEHVVRALTNALEQQR-------LHHAYLFTGTRGVGKTTLARILAKSLNCE--TGVTATPCGVCSACLEIDSGRF   87 (527)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-------CCEEEEEECCCCCCHHHHHHHHHHHhcCC--CCCCCCCCCCCHHHHHHhcCCC
Confidence            48999999998887776421       23357999999999999999999998761  111 1121110           


Q ss_pred             -ecccccCCCCChHHHHHHHHHHHHHHHHH----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEE
Q psy1694         147 -FNSRIHFPNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFL  221 (247)
Q Consensus       147 -~~~~l~~~~~~~v~~~~~~l~~~~~~~l~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~t  221 (247)
                       +.-++.......+..    +...+ +...    ..++.|+||||+|+|+.+.++.|++.||+.+       .+++||++
T Consensus        88 ~d~~ei~~~~~~~vd~----ir~l~-~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp-------~~~~fIL~  155 (527)
T PRK14969         88 VDLIEVDAASNTQVDA----MRELL-DNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP-------EHVKFILA  155 (527)
T ss_pred             CceeEeeccccCCHHH----HHHHH-HHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCC-------CCEEEEEE
Confidence             001111111112222    22222 2222    2345899999999999999999999999976       67889998


Q ss_pred             eCCC
Q psy1694         222 SNSG  225 (247)
Q Consensus       222 SN~g  225 (247)
                      ||..
T Consensus       156 t~d~  159 (527)
T PRK14969        156 TTDP  159 (527)
T ss_pred             eCCh
Confidence            8653

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.37  E-value=4.9e-12  Score=119.23  Aligned_cols=144  Identities=16%  Similarity=0.150  Sum_probs=89.9

Q ss_pred             hcCChHHHHHHHHHHHHHhhh---cccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694          79 HVHGQELAISHICGALKNHFQ---NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN  155 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~---~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~  155 (247)
                      .|.|.+.+++.+.+....+..   ... -..|..+||+||||||||++|+++|+.+ +       .+|+.++++.+... 
T Consensus       229 dvgGl~~lK~~l~~~~~~~~~~~~~~g-l~~pkGILL~GPpGTGKTllAkaiA~e~-~-------~~~~~l~~~~l~~~-  298 (489)
T CHL00195        229 DIGGLDNLKDWLKKRSTSFSKQASNYG-LPTPRGLLLVGIQGTGKSLTAKAIANDW-Q-------LPLLRLDVGKLFGG-  298 (489)
T ss_pred             HhcCHHHHHHHHHHHHHHhhHHHHhcC-CCCCceEEEECCCCCcHHHHHHHHHHHh-C-------CCEEEEEhHHhccc-
Confidence            367777777766654433211   111 2355679999999999999999999984 2       48888888766433 


Q ss_pred             CChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh------------hhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694         156 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK------------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  223 (247)
Q Consensus       156 ~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN  223 (247)
                        +++.-...+...+ ...+....+|+||||+|++..            .++..++..|++..       .+.++|+|||
T Consensus       299 --~vGese~~l~~~f-~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~-------~~V~vIaTTN  368 (489)
T CHL00195        299 --IVGESESRMRQMI-RIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKK-------SPVFVVATAN  368 (489)
T ss_pred             --ccChHHHHHHHHH-HHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCC-------CceEEEEecC
Confidence              2232222333333 233445669999999998743            13455666666532       5677888888


Q ss_pred             CChHHHHHHHHHHHHcCcccccC
Q psy1694         224 SGGTEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       224 ~g~~~i~~~~~~~~~~g~~Re~~  246 (247)
                      ... .+.   .++++.||+.+.+
T Consensus       369 ~~~-~Ld---~allR~GRFD~~i  387 (489)
T CHL00195        369 NID-LLP---LEILRKGRFDEIF  387 (489)
T ss_pred             Chh-hCC---HHHhCCCcCCeEE
Confidence            642 233   3445678876543

>KOG0991|consensus

Probab=99.36  E-value=2.2e-12  Score=109.25  Aligned_cols=129  Identities=19%  Similarity=0.268  Sum_probs=91.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++|.+..++.+.-..+.    .   +-| +++|.||||||||+.+.++|+.|.+   +.........|.|     +...
T Consensus        28 dIVGNe~tv~rl~via~~----g---nmP-~liisGpPG~GKTTsi~~LAr~LLG---~~~ke~vLELNAS-----deRG   91 (333)
T KOG0991|consen   28 DIVGNEDTVERLSVIAKE----G---NMP-NLIISGPPGTGKTTSILCLARELLG---DSYKEAVLELNAS-----DERG   91 (333)
T ss_pred             HhhCCHHHHHHHHHHHHc----C---CCC-ceEeeCCCCCchhhHHHHHHHHHhC---hhhhhHhhhccCc-----cccc
Confidence            499999998877543332    1   123 5899999999999999999999987   3333333444433     3333


Q ss_pred             HHHHHHHHHHHHHHHHHh--CCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHH
Q psy1694         159 VSLYRLQLTNWIISNVTA--CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM  230 (247)
Q Consensus       159 v~~~~~~l~~~~~~~l~~--~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~  230 (247)
                      ++--+..++......+.-  +...++||||+|.|..+.|.+|.+.||-+.       +.+-|.+.+|...+.|.
T Consensus        92 IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS-------~ttRFalaCN~s~KIiE  158 (333)
T KOG0991|consen   92 IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYS-------NTTRFALACNQSEKIIE  158 (333)
T ss_pred             cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHc-------ccchhhhhhcchhhhhh
Confidence            443344444444344433  555999999999999999999999999865       56679999998776654

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=99.36  E-value=4e-12  Score=113.19  Aligned_cols=130  Identities=15%  Similarity=0.199  Sum_probs=84.7

Q ss_pred             cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC----------------CCcc
Q psy1694          80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG----------------TSRF  143 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~----------------~~~~  143 (247)
                      ++|++.+...+......+-..      |-.++|+||||+|||++|.++|+.+++....+.                ..++
T Consensus         3 ~~~~~~~~~~l~~~~~~~~~~------~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~   76 (325)
T COG0470           3 LVPWQEAVKRLLVQALESGRL------PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDF   76 (325)
T ss_pred             cccchhHHHHHHHHHHhcCCC------CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCce
Confidence            567777776666666543322      226899999999999999999999987211111                1133


Q ss_pred             eeeecccccCCCCChHHHHHHHHHHHHHHHHHh----CCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEE
Q psy1694         144 VHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFL  219 (247)
Q Consensus       144 v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~----~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI  219 (247)
                      +.++.+..     .....-.++++... .....    .+..++++||+|.|.++.++++++.+|+++       .++.||
T Consensus        77 lel~~s~~-----~~~~i~~~~vr~~~-~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~-------~~~~~i  143 (325)
T COG0470          77 LELNPSDL-----RKIDIIVEQVRELA-EFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPP-------KNTRFI  143 (325)
T ss_pred             EEeccccc-----CCCcchHHHHHHHH-HHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCC-------CCeEEE
Confidence            33332221     11000111222222 22222    356999999999999999999999999987       899999


Q ss_pred             EEeCCChHH
Q psy1694         220 FLSNSGGTE  228 (247)
Q Consensus       220 ~tSN~g~~~  228 (247)
                      ++||...+.
T Consensus       144 l~~n~~~~i  152 (325)
T COG0470         144 LITNDPSKI  152 (325)
T ss_pred             EEcCChhhc
Confidence            999954443

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.36  E-value=7.9e-12  Score=115.44  Aligned_cols=131  Identities=18%  Similarity=0.209  Sum_probs=82.3

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccC-------CCCCcce-------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-------KGTSRFV-------  144 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~-------g~~~~~v-------  144 (247)
                      .++||+.+++.+.+.+...       +.|-.++|+||+|+|||++|+++|+.+.+....       +...|+-       
T Consensus        17 eiiGq~~~~~~L~~~~~~~-------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~   89 (397)
T PRK14955         17 DITAQEHITRTIQNSLRMG-------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD   89 (397)
T ss_pred             hccChHHHHHHHHHHHHhC-------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence            4999999998887766632       134468999999999999999999998761000       0011111       


Q ss_pred             -----eeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEE
Q psy1694         145 -----HKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFL  219 (247)
Q Consensus       145 -----~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI  219 (247)
                           +.+..++.+.....++..+. +...+...-...++.++|+||+++|+...++.|++.|++.+       ..++||
T Consensus        90 ~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~-------~~t~~I  161 (397)
T PRK14955         90 FDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPP-------PHAIFI  161 (397)
T ss_pred             HhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCC-------CCeEEE
Confidence                 11111222211122222221 11111111223456899999999999999999999999865       577888


Q ss_pred             EEeCC
Q psy1694         220 FLSNS  224 (247)
Q Consensus       220 ~tSN~  224 (247)
                      ++++.
T Consensus       162 l~t~~  166 (397)
T PRK14955        162 FATTE  166 (397)
T ss_pred             EEeCC
Confidence            88754

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=99.36  E-value=5.2e-12  Score=121.20  Aligned_cols=130  Identities=18%  Similarity=0.219  Sum_probs=84.3

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcce------------ee
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV------------HK  146 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v------------~~  146 (247)
                      .++||+.+++.+.+++...-       .+-.+||+||+|||||++|+.+|+.+.+..... ..|+-            +.
T Consensus        17 ~viGq~~v~~~L~~~i~~~~-------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-~~pC~~C~~C~~i~~g~~~   88 (559)
T PRK05563         17 DVVGQEHITKTLKNAIKQGK-------ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-GEPCNECEICKAITNGSLM   88 (559)
T ss_pred             hccCcHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CCCCCccHHHHHHhcCCCC
Confidence            49999999998888877421       233689999999999999999999987621000 01110            01


Q ss_pred             ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         147 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      +..+++......+...++ +.+.+...-..+.+.|+||||+++|..+.++.|++.||+.+       .+++||++++.
T Consensus        89 dv~eidaas~~~vd~ir~-i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp-------~~~ifIlatt~  158 (559)
T PRK05563         89 DVIEIDAASNNGVDEIRD-IRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPP-------AHVIFILATTE  158 (559)
T ss_pred             CeEEeeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCC-------CCeEEEEEeCC
Confidence            111111111122222221 22222222224557999999999999999999999999976       67899998764

>PHA02244 ATPase-like protein

Probab=99.35  E-value=3.7e-12  Score=115.25  Aligned_cols=139  Identities=13%  Similarity=0.094  Sum_probs=92.8

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc----cccCC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS----RIHFP  154 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~----~l~~~  154 (247)
                      ..+|+++.+......+.+++..+.      .++|.||||||||++|+++|+.+ +       .||+.++..    .+.+.
T Consensus        97 ~~ig~sp~~~~~~~ri~r~l~~~~------PVLL~GppGtGKTtLA~aLA~~l-g-------~pfv~In~l~d~~~L~G~  162 (383)
T PHA02244         97 TKIASNPTFHYETADIAKIVNANI------PVFLKGGAGSGKNHIAEQIAEAL-D-------LDFYFMNAIMDEFELKGF  162 (383)
T ss_pred             cccCCCHHHHHHHHHHHHHHhcCC------CEEEECCCCCCHHHHHHHHHHHh-C-------CCEEEEecChHHHhhccc
Confidence            467888888888887877776554      57999999999999999998874 2       367776631    11110


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc--cc--cCCceEEEEEeCC------
Q psy1694         155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--QI--SFQNTIFLFLSNS------  224 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~--~~--~~~~~ifI~tSN~------  224 (247)
                      .. ..+.|..   +.+...  ...+++++|||++.++++++..|.++++++.+..  +.  -..+..+|+|+|.      
T Consensus       163 i~-~~g~~~d---gpLl~A--~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~  236 (383)
T PHA02244        163 ID-ANGKFHE---TPFYEA--FKKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGAD  236 (383)
T ss_pred             cc-ccccccc---hHHHHH--hhcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcc
Confidence            00 0011211   122222  2457899999999999999999999999765322  11  2357789999997      


Q ss_pred             ----ChHHHHHHHHHHH
Q psy1694         225 ----GGTEIMNTFLELR  237 (247)
Q Consensus       225 ----g~~~i~~~~~~~~  237 (247)
                          |.+.++..+++.+
T Consensus       237 ~~y~G~k~L~~AllDRF  253 (383)
T PHA02244        237 HIYVARNKIDGATLDRF  253 (383)
T ss_pred             cccCCCcccCHHHHhhc
Confidence                3455555555543

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=99.35  E-value=9.9e-12  Score=120.27  Aligned_cols=131  Identities=18%  Similarity=0.206  Sum_probs=84.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcce------ee-----
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFV------HK-----  146 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v------~~-----  146 (247)
                      .++||+.+++.|.+++...       +.|-.++|+||+|+|||++|+++|+.+.+.  .+. ..++-      .+     
T Consensus        17 dIIGQe~vv~~L~~ai~~~-------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~--~~~~~~pCg~C~sCr~i~~g~~   87 (709)
T PRK08691         17 DLVGQEHVVKALQNALDEG-------RLHHAYLLTGTRGVGKTTIARILAKSLNCE--NAQHGEPCGVCQSCTQIDAGRY   87 (709)
T ss_pred             HHcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCcHHHHHHHHHHHhccc--CCCCCCCCcccHHHHHHhccCc
Confidence            4999999999888887642       134468999999999999999999998761  111 01111      00     


Q ss_pred             -ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         147 -FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       147 -~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                       +.-++.......++..++.+. .....-....+.|+||||+++|+...++.|++.|++..       .+++|||+||..
T Consensus        88 ~DvlEidaAs~~gVd~IRelle-~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp-------~~v~fILaTtd~  159 (709)
T PRK08691         88 VDLLEIDAASNTGIDNIREVLE-NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPP-------EHVKFILATTDP  159 (709)
T ss_pred             cceEEEeccccCCHHHHHHHHH-HHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCC-------CCcEEEEEeCCc
Confidence             001111111222332222211 11111122456899999999999999999999999865       678899998754


Q ss_pred             h
Q psy1694         226 G  226 (247)
Q Consensus       226 ~  226 (247)
                      .
T Consensus       160 ~  160 (709)
T PRK08691        160 H  160 (709)
T ss_pred             c
Confidence            3

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=99.35  E-value=8e-12  Score=112.09  Aligned_cols=129  Identities=10%  Similarity=0.224  Sum_probs=82.7

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC----
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP----  154 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~----  154 (247)
                      .++||+.+++.+.+.+..    +.   .| .++|+||||||||++|+++++.+++   .+...+++.++++.+...    
T Consensus        16 ~~~g~~~~~~~L~~~~~~----~~---~~-~lll~Gp~GtGKT~la~~~~~~l~~---~~~~~~~~~i~~~~~~~~~~~~   84 (337)
T PRK12402         16 DILGQDEVVERLSRAVDS----PN---LP-HLLVQGPPGSGKTAAVRALARELYG---DPWENNFTEFNVADFFDQGKKY   84 (337)
T ss_pred             HhcCCHHHHHHHHHHHhC----CC---Cc-eEEEECCCCCCHHHHHHHHHHHhcC---cccccceEEechhhhhhcchhh
Confidence            378999988888776652    11   22 4789999999999999999999876   443445677776543211    


Q ss_pred             ---CCChHHHH----------HHHHHHHHHHHHH----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceE
Q psy1694         155 ---NENHVSLY----------RLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTI  217 (247)
Q Consensus       155 ---~~~~v~~~----------~~~l~~~~~~~l~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~i  217 (247)
                         ++.....+          .+.+...+.....    ..+..+||+||++.+++..++.|++.+++..       ..+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~-------~~~~  157 (337)
T PRK12402         85 LVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS-------RTCR  157 (337)
T ss_pred             hhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc-------CCCe
Confidence               01110000          0111111111111    1345799999999999999999999998754       4456


Q ss_pred             EEEEeCCC
Q psy1694         218 FLFLSNSG  225 (247)
Q Consensus       218 fI~tSN~g  225 (247)
                      ||+++|..
T Consensus       158 ~Il~~~~~  165 (337)
T PRK12402        158 FIIATRQP  165 (337)
T ss_pred             EEEEeCCh
Confidence            77777643

>KOG0733|consensus

Probab=99.34  E-value=5.6e-12  Score=118.66  Aligned_cols=146  Identities=16%  Similarity=0.216  Sum_probs=95.5

Q ss_pred             cCChHHHHHHHHHHHHHhhhcccC-----CCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          80 VHGQELAISHICGALKNHFQNRYH-----NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~~-----~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      +-|-+.....+.+.+.. ...+.-     -.-|..+|||||||||||.+|+++|.++-        -||+.+...++...
T Consensus       192 iGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~--------vPf~~isApeivSG  262 (802)
T KOG0733|consen  192 IGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG--------VPFLSISAPEIVSG  262 (802)
T ss_pred             ccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC--------CceEeecchhhhcc
Confidence            66677777777766643 222210     12345789999999999999999999853        48988887665322


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCC---CeEEEEeCCCCCChh-----------hHHHHHhhcccCcccccccCCceEEEE
Q psy1694         155 NENHVSLYRLQLTNWIISNVTACD---RAIFIFDEVDKFPKG-----------LLDVIIPFIDHHAVYNQISFQNTIFLF  220 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~~---~~vlilDEiek~~~~-----------~~~~Ll~~Le~~~~~~~~~~~~~ifI~  220 (247)
                             +.++.+..+++.+..+.   .+++||||||.+.|.           +...|+.-||+-..+ ..+-..+++|.
T Consensus       263 -------vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~-~~~g~~VlVIg  334 (802)
T KOG0733|consen  263 -------VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNE-KTKGDPVLVIG  334 (802)
T ss_pred             -------cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccc-ccCCCCeEEEe
Confidence                   22233344444444443   399999999998762           466778888874321 12224588999


Q ss_pred             EeCCChHHHHHHHHHHHHcCcccccC
Q psy1694         221 LSNSGGTEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       221 tSN~g~~~i~~~~~~~~~~g~~Re~~  246 (247)
                      +||.... +.   -.+++.|||.-||
T Consensus       335 ATnRPDs-lD---paLRRaGRFdrEI  356 (802)
T KOG0733|consen  335 ATNRPDS-LD---PALRRAGRFDREI  356 (802)
T ss_pred             cCCCCcc-cC---HHHhcccccccee
Confidence            9998644 22   3567888887665

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=99.34  E-value=9.4e-12  Score=114.24  Aligned_cols=64  Identities=20%  Similarity=0.276  Sum_probs=51.2

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhccc------CCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694          69 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRY------HNTKALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus        69 ~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~------~~~kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+.+...|++.++||+.|++.+.-++..++....      ++..|..++|+||||||||++|+.+|+.+.
T Consensus         3 P~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~   72 (441)
T TIGR00390         3 PREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN   72 (441)
T ss_pred             HHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3567888999999999999999998886432111      123567899999999999999999999863

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=99.34  E-value=9.8e-12  Score=118.98  Aligned_cols=130  Identities=17%  Similarity=0.216  Sum_probs=83.3

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcce------------ee
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV------------HK  146 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v------------~~  146 (247)
                      .++||+.+++.+.+++....       .|-.++|+||+|+|||++|+.+|+.+.+..+.. ..++-            +.
T Consensus        17 dIIGQe~iv~~L~~aI~~~r-------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~-~~~Cg~C~sCr~i~~~~h~   88 (605)
T PRK05896         17 QIIGQELIKKILVNAILNNK-------LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKD-GDCCNSCSVCESINTNQSV   88 (605)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-------CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CCCCcccHHHHHHHcCCCC
Confidence            48999999988888775321       233689999999999999999999987621110 01110            00


Q ss_pred             ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         147 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      +.-++.......++..+. +.+.+...-...++.|+||||++.|..+.++.|++.||+++       ..++||++++.
T Consensus        89 DiieIdaas~igVd~IRe-Ii~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp-------~~tvfIL~Tt~  158 (605)
T PRK05896         89 DIVELDAASNNGVDEIRN-IIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPP-------KHVVFIFATTE  158 (605)
T ss_pred             ceEEeccccccCHHHHHH-HHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCC-------CcEEEEEECCC
Confidence            111111111122332222 11222111122456899999999999999999999999976       67899998865

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=99.34  E-value=1.4e-11  Score=117.03  Aligned_cols=127  Identities=18%  Similarity=0.242  Sum_probs=83.8

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCC-Ccce------------e
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT-SRFV------------H  145 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~-~~~v------------~  145 (247)
                      .++||+.+++.+.+.+...       +-|-.++|+||+|+|||++|+++++.+++.  .+.. .|+.            +
T Consensus        15 eiiGqe~v~~~L~~~I~~g-------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~--~~~~~~pC~~C~~C~~~~~~~h   85 (535)
T PRK08451         15 ELIGQESVSKTLSLALDNN-------RLAHAYLFSGLRGSGKTSSARIFARALVCE--QGPSSTPCDTCIQCQSALENRH   85 (535)
T ss_pred             HccCcHHHHHHHHHHHHcC-------CCCeeEEEECCCCCcHHHHHHHHHHHhcCC--CCCCCCCCcccHHHHHHhhcCC
Confidence            3999999998888877632       134468999999999999999999998762  1111 1111            1


Q ss_pred             eecccccCCCCChHHHHHHHHHHHHHHH---HHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694         146 KFNSRIHFPNENHVSLYRLQLTNWIISN---VTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  222 (247)
Q Consensus       146 ~~~~~l~~~~~~~v~~~~~~l~~~~~~~---l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS  222 (247)
                      .+.-++.......+..    +...+...   -...++.|+||||+++|+.+.++.|++.||+.+       .++.||+++
T Consensus        86 ~dv~eldaas~~gId~----IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp-------~~t~FIL~t  154 (535)
T PRK08451         86 IDIIEMDAASNRGIDD----IRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPP-------SYVKFILAT  154 (535)
T ss_pred             CeEEEeccccccCHHH----HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcC-------CceEEEEEE
Confidence            1111111111112222    22222111   112456899999999999999999999999976       678899998


Q ss_pred             CCC
Q psy1694         223 NSG  225 (247)
Q Consensus       223 N~g  225 (247)
                      |..
T Consensus       155 td~  157 (535)
T PRK08451        155 TDP  157 (535)
T ss_pred             CCh
Confidence            753

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=99.33  E-value=1.3e-11  Score=120.37  Aligned_cols=131  Identities=18%  Similarity=0.235  Sum_probs=83.4

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee--------eccc
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK--------FNSR  150 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~--------~~~~  150 (247)
                      .++||+.+++.+.+++....       -|-.+||+||+|+|||++|+++|+.+.+........||-..        +.-+
T Consensus        19 dIiGQe~~v~~L~~aI~~~r-------l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie   91 (725)
T PRK07133         19 DIVGQDHIVQTLKNIIKSNK-------ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE   91 (725)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-------CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE
Confidence            49999999998888886421       23368999999999999999999998772100001111000        0001


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         151 IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       151 l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      +.......+...+. +...+...-...++.|+||||++.|..+.++.|++.||+++       ..++||++++.
T Consensus        92 idaasn~~vd~IRe-Lie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP-------~~tifILaTte  157 (725)
T PRK07133         92 MDAASNNGVDEIRE-LIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPP-------KHVIFILATTE  157 (725)
T ss_pred             EeccccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCC-------CceEEEEEcCC
Confidence            11111111222221 22222222223456899999999999999999999999976       67888888864

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=99.33  E-value=1.2e-11  Score=119.14  Aligned_cols=133  Identities=15%  Similarity=0.218  Sum_probs=84.3

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCC----ccee-eec-----
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS----RFVH-KFN-----  148 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~----~~v~-~~~-----  148 (247)
                      .++||+.+++.+.+++...       +.|-.++|+||+|+|||++|+++|+.+++....+...    ++-. ..|     
T Consensus        25 dliGq~~~v~~L~~~~~~g-------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~   97 (598)
T PRK09111         25 DLIGQEAMVRTLTNAFETG-------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIME   97 (598)
T ss_pred             HhcCcHHHHHHHHHHHHcC-------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhc
Confidence            4999999999988877632       1333689999999999999999999987621111001    1100 001     


Q ss_pred             ------ccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694         149 ------SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  222 (247)
Q Consensus       149 ------~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS  222 (247)
                            -++.......++..++ +.+.+...-....+.|+|+||++.|+...++.|++.||+..       .+++|||++
T Consensus        98 g~h~Dv~e~~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp-------~~~~fIl~t  169 (598)
T PRK09111         98 GRHVDVLEMDAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPP-------PHVKFIFAT  169 (598)
T ss_pred             CCCCceEEecccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCC-------CCeEEEEEe
Confidence                  0111111112222221 11122111123457999999999999999999999999976       678899988


Q ss_pred             CCCh
Q psy1694         223 NSGG  226 (247)
Q Consensus       223 N~g~  226 (247)
                      |.-.
T Consensus       170 te~~  173 (598)
T PRK09111        170 TEIR  173 (598)
T ss_pred             CChh
Confidence            6433

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.32  E-value=1.5e-11  Score=116.49  Aligned_cols=128  Identities=20%  Similarity=0.256  Sum_probs=81.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCC-Ccce------------e
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT-SRFV------------H  145 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~-~~~v------------~  145 (247)
                      .++||+.+++.+.+++...       +.|-.++|+||||||||++|+++|+.+.+   .+.. .++.            +
T Consensus        15 dvvGq~~v~~~L~~~i~~~-------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c---~~~~~~~cg~C~sc~~i~~~~h   84 (504)
T PRK14963         15 EVVGQEHVKEVLLAALRQG-------RLGHAYLFSGPRGVGKTTTARLIAMAVNC---SGEDPKPCGECESCLAVRRGAH   84 (504)
T ss_pred             HhcChHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHHhc---cCCCCCCCCcChhhHHHhcCCC
Confidence            3899999998888777642       13335799999999999999999999875   2210 0100            0


Q ss_pred             eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       146 ~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      .+.-++.......+...++ +...+...-....+.++||||++.++...++.|++.|++..       .+++||+++|.
T Consensus        85 ~dv~el~~~~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~-------~~t~~Il~t~~  155 (504)
T PRK14963         85 PDVLEIDAASNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPP-------EHVIFILATTE  155 (504)
T ss_pred             CceEEecccccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCC-------CCEEEEEEcCC
Confidence            0111111111122222221 22222111112456899999999999999999999999965       56677777764

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=99.32  E-value=2.6e-11  Score=108.18  Aligned_cols=118  Identities=16%  Similarity=0.194  Sum_probs=80.6

Q ss_pred             cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChH
Q psy1694          80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV  159 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v  159 (247)
                      ++||+.+.+.+...+..    .   ..|..++|+||+|+|||++|+++++.+.        .+++.++++.  .   . +
T Consensus        23 ~~~~~~~~~~l~~~~~~----~---~~~~~lll~G~~G~GKT~la~~l~~~~~--------~~~~~i~~~~--~---~-~   81 (316)
T PHA02544         23 CILPAADKETFKSIVKK----G---RIPNMLLHSPSPGTGKTTVAKALCNEVG--------AEVLFVNGSD--C---R-I   81 (316)
T ss_pred             hcCcHHHHHHHHHHHhc----C---CCCeEEEeeCcCCCCHHHHHHHHHHHhC--------ccceEeccCc--c---c-H
Confidence            89999998887776652    1   2444677899999999999999988742        2456666544  1   1 2


Q ss_pred             HHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-ChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         160 SLYRLQLTNWIISNVTACDRAIFIFDEVDKF-PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       160 ~~~~~~l~~~~~~~l~~~~~~vlilDEiek~-~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                      ...++.+.......-......++||||++.+ +...++.|..++++..       .++.||+|||..
T Consensus        82 ~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~-------~~~~~Ilt~n~~  141 (316)
T PHA02544         82 DFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS-------KNCSFIITANNK  141 (316)
T ss_pred             HHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcC-------CCceEEEEcCCh
Confidence            2222222222211111135689999999999 6778888988899854       677899999854

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=99.32  E-value=1.7e-11  Score=114.88  Aligned_cols=131  Identities=16%  Similarity=0.244  Sum_probs=82.8

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee------------e
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH------------K  146 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~------------~  146 (247)
                      .++||+.+++.+.+.++..       +-|-.++|+||+|+|||++|+.+|+.+++........++..            .
T Consensus        18 diiGq~~~v~~L~~~i~~~-------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~   90 (451)
T PRK06305         18 EILGQDAVVAVLKNALRFN-------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSL   90 (451)
T ss_pred             HhcCcHHHHHHHHHHHHcC-------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCC
Confidence            4999999999888877632       12336899999999999999999999876210000111111            1


Q ss_pred             ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         147 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      +.-++.+.....+...+. +...+...-...++.++|+||+++|+.+.++.|++.||+.+       .+++||+++|.
T Consensus        91 d~~~i~g~~~~gid~ir~-i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~-------~~~~~Il~t~~  160 (451)
T PRK06305         91 DVLEIDGASHRGIEDIRQ-INETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP-------QHVKFFLATTE  160 (451)
T ss_pred             ceEEeeccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC-------CCceEEEEeCC
Confidence            111121111111221111 12222111123567999999999999999999999999965       56788888764

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.32  E-value=1.9e-11  Score=118.08  Aligned_cols=131  Identities=17%  Similarity=0.203  Sum_probs=83.3

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCC-------CCCcce-------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-------GTSRFV-------  144 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g-------~~~~~v-------  144 (247)
                      .++||+.+++.+.+++...       +-|-.++|+||+|||||++|+.+|+.+.+....+       ...+|-       
T Consensus        17 eivGQe~i~~~L~~~i~~~-------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~   89 (620)
T PRK14954         17 DITAQEHITHTIQNSLRMD-------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRD   89 (620)
T ss_pred             HhcCcHHHHHHHHHHHHcC-------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHH
Confidence            4899999999887776531       1333689999999999999999999987610000       001110       


Q ss_pred             -----eeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEE
Q psy1694         145 -----HKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFL  219 (247)
Q Consensus       145 -----~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI  219 (247)
                           +.+..++++.....++..+. +...+...-...++.|+|+||+++|....++.|++.||+.+       ..++||
T Consensus        90 ~~~g~~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp-------~~tv~I  161 (620)
T PRK14954         90 FDAGTSLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPP-------PHAIFI  161 (620)
T ss_pred             HhccCCCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCC-------CCeEEE
Confidence                 11112222211122222221 11112111223467899999999999999999999999976       678888


Q ss_pred             EEeCC
Q psy1694         220 FLSNS  224 (247)
Q Consensus       220 ~tSN~  224 (247)
                      ++++.
T Consensus       162 L~t~~  166 (620)
T PRK14954        162 FATTE  166 (620)
T ss_pred             EEeCC
Confidence            88854

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.31  E-value=1.9e-11  Score=112.67  Aligned_cols=133  Identities=14%  Similarity=0.164  Sum_probs=84.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .+.|.+..++.+.+.+...+..+.     ....|..++|+||||||||++|+++|+.+.        .+|+.+.++++..
T Consensus       132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--------~~~i~v~~~~l~~  203 (389)
T PRK03992        132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--------ATFIRVVGSELVQ  203 (389)
T ss_pred             HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--------CCEEEeehHHHhH
Confidence            488999999999888764332211     123566799999999999999999988742        3688888766532


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------ChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  222 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~-----------~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS  222 (247)
                      ..   ++.....+.. +.........++|||||+|.+           ++.++..+..++.+-.-  -.+..+..+|+||
T Consensus       204 ~~---~g~~~~~i~~-~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~--~~~~~~v~VI~aT  277 (389)
T PRK03992        204 KF---IGEGARLVRE-LFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG--FDPRGNVKIIAAT  277 (389)
T ss_pred             hh---ccchHHHHHH-HHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccc--cCCCCCEEEEEec
Confidence            11   1111111111 222223345589999999987           34566677777654210  0122477899999


Q ss_pred             CCC
Q psy1694         223 NSG  225 (247)
Q Consensus       223 N~g  225 (247)
                      |..
T Consensus       278 n~~  280 (389)
T PRK03992        278 NRI  280 (389)
T ss_pred             CCh
Confidence            875

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.31  E-value=2e-11  Score=118.21  Aligned_cols=131  Identities=16%  Similarity=0.182  Sum_probs=83.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcceee-----------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVHK-----------  146 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v~~-----------  146 (247)
                      .++||+.+.+.|.+++....       .+-.++|+||+|+|||++|+++|+.+++....+. ..++-..           
T Consensus        17 ~liGq~~i~~~L~~~l~~~r-------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h   89 (620)
T PRK14948         17 ELVGQEAIATTLKNALISNR-------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNA   89 (620)
T ss_pred             hccChHHHHHHHHHHHHcCC-------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCC
Confidence            48999999998888777421       1226899999999999999999999876211110 0111100           


Q ss_pred             -ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         147 -FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       147 -~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                       +.-++.......++..++.+ ......-..+.+.|+||||+|+|+.+.++.|++.||+..       .+++||+++|.
T Consensus        90 ~D~~ei~~~~~~~vd~IReii-~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp-------~~tvfIL~t~~  160 (620)
T PRK14948         90 LDVIEIDAASNTGVDNIRELI-ERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPP-------PRVVFVLATTD  160 (620)
T ss_pred             ccEEEEeccccCCHHHHHHHH-HHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCC-------cCeEEEEEeCC
Confidence             00011111112222222211 111111112456899999999999999999999999976       67899998875

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=99.31  E-value=3e-11  Score=107.44  Aligned_cols=124  Identities=19%  Similarity=0.293  Sum_probs=82.7

Q ss_pred             cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChH
Q psy1694          80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV  159 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v  159 (247)
                      ++|++.+++.+.+.++.    +.   .| .++|+||+|+|||++++.+++.+++   .+...+++.++++..     ...
T Consensus        19 ~~g~~~~~~~l~~~i~~----~~---~~-~~ll~G~~G~GKt~~~~~l~~~l~~---~~~~~~~i~~~~~~~-----~~~   82 (319)
T PRK00440         19 IVGQEEIVERLKSYVKE----KN---MP-HLLFAGPPGTGKTTAALALARELYG---EDWRENFLELNASDE-----RGI   82 (319)
T ss_pred             hcCcHHHHHHHHHHHhC----CC---CC-eEEEECCCCCCHHHHHHHHHHHHcC---CccccceEEeccccc-----cch
Confidence            78999988888777653    11   22 4699999999999999999999877   544445555543321     111


Q ss_pred             HHHHHHHHHHHHHH-HHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694         160 SLYRLQLTNWIISN-VTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  226 (247)
Q Consensus       160 ~~~~~~l~~~~~~~-l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~  226 (247)
                      ......+....... +...+..++++||++.++...++.|+++++...       .++.||+++|...
T Consensus        83 ~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~-------~~~~lIl~~~~~~  143 (319)
T PRK00440         83 DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS-------QNTRFILSCNYSS  143 (319)
T ss_pred             HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-------CCCeEEEEeCCcc
Confidence            11222222211110 111345799999999999999999999998754       4568888887643

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=99.30  E-value=4e-12  Score=119.57  Aligned_cols=130  Identities=15%  Similarity=0.197  Sum_probs=88.4

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee------------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK------------  146 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~------------  146 (247)
                      .++||+.+...|.+++....-.+       ..+|.||-|||||++||.+|+.+.+... ....||-..            
T Consensus        17 evvGQe~v~~~L~nal~~~ri~h-------AYlfsG~RGvGKTt~Ari~AkalNC~~~-~~~ePC~~C~~Ck~I~~g~~~   88 (515)
T COG2812          17 DVVGQEHVVKTLSNALENGRIAH-------AYLFSGPRGVGKTTIARILAKALNCENG-PTAEPCGKCISCKEINEGSLI   88 (515)
T ss_pred             HhcccHHHHHHHHHHHHhCcchh-------hhhhcCCCCcCchhHHHHHHHHhcCCCC-CCCCcchhhhhhHhhhcCCcc
Confidence            37999999999999988532222       4799999999999999999999877210 111222211            


Q ss_pred             ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         147 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      +.-+++......|+. .+.+.+.+...-....+.|++|||++.+....+++||+.|||++       .+++|||.|.-
T Consensus        89 DviEiDaASn~gVdd-iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP-------~hV~FIlATTe  158 (515)
T COG2812          89 DVIEIDAASNTGVDD-IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPP-------SHVKFILATTE  158 (515)
T ss_pred             cchhhhhhhccChHH-HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCc-------cCeEEEEecCC
Confidence            112222222233331 22222233223334456999999999999999999999999988       89999998753

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=99.30  E-value=2.7e-11  Score=116.15  Aligned_cols=129  Identities=16%  Similarity=0.213  Sum_probs=84.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCC-Ccce------------e
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT-SRFV------------H  145 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~-~~~v------------~  145 (247)
                      .++||+.+++.+.+++...       +.|-.++|+||+|+|||++|+++|+.+.+.  .+.. .|+-            +
T Consensus        17 diiGqe~iv~~L~~~i~~~-------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~--~~~~~~pC~~C~~C~~i~~~~~   87 (563)
T PRK06647         17 SLEGQDFVVETLKHSIESN-------KIANAYIFSGPRGVGKTSSARAFARCLNCV--NGPTPMPCGECSSCKSIDNDNS   87 (563)
T ss_pred             HccCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHhhccc--cCCCCCCCccchHHHHHHcCCC
Confidence            4999999999888888642       133368999999999999999999998761  1110 1111            1


Q ss_pred             eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       146 ~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      .+..++.+.....++..+. +...+...-...++.++|+||++.|+...++.|++.|++++       ..++|||+++.
T Consensus        88 ~dv~~idgas~~~vddIr~-l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp-------~~~vfI~~tte  158 (563)
T PRK06647         88 LDVIEIDGASNTSVQDVRQ-IKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPP-------PYIVFIFATTE  158 (563)
T ss_pred             CCeEEecCcccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCC-------CCEEEEEecCC
Confidence            1111222221122222222 11111111123567999999999999999999999999976       68899998854

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=99.29  E-value=2.5e-11  Score=108.77  Aligned_cols=128  Identities=14%  Similarity=0.251  Sum_probs=83.4

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcc-----eeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRF-----VHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~-----v~~~~~~l~~  153 (247)
                      .++||+.+++.+.+++....       -|-.++|+||+|+||+++|.++|+.+++   ....+.+     ...+.+.+++
T Consensus         5 ~iiGq~~~~~~L~~~i~~~r-------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc---~~~c~~c~~~~~~~~~hPDl~~   74 (314)
T PRK07399          5 NLIGQPLAIELLTAAIKQNR-------IAPAYLFAGPEGVGRKLAALCFIEGLLS---QGSPSKNIRRRLEEGNHPDLLW   74 (314)
T ss_pred             HhCCHHHHHHHHHHHHHhCC-------CCceEEEECCCCCCHHHHHHHHHHHHcC---CCCCCCcHhcccccCCCCCEEE
Confidence            59999999999998887421       2337899999999999999999999987   3211111     1111122211


Q ss_pred             CCCC-----h-H-----H----------H-HHHHHHHHHHHHHH----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcc
Q psy1694         154 PNEN-----H-V-----S----------L-YRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV  207 (247)
Q Consensus       154 ~~~~-----~-v-----~----------~-~~~~l~~~~~~~l~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~  207 (247)
                      -.|.     . +     +          . ..+++ ..+...+.    ..++.|+|||++|+|++..+++|++.|||++ 
T Consensus        75 i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-  152 (314)
T PRK07399         75 VEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-  152 (314)
T ss_pred             EeccccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-
Confidence            1110     0 0     0          0 00111 12223333    2456999999999999999999999999963 


Q ss_pred             cccccCCceEEEEEeCCC
Q psy1694         208 YNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       208 ~~~~~~~~~ifI~tSN~g  225 (247)
                             +++||++|+..
T Consensus       153 -------~~~fILi~~~~  163 (314)
T PRK07399        153 -------NGTLILIAPSP  163 (314)
T ss_pred             -------CCeEEEEECCh
Confidence                   56888888743

>KOG0733|consensus

Probab=99.28  E-value=2.7e-11  Score=114.17  Aligned_cols=129  Identities=13%  Similarity=0.181  Sum_probs=83.2

Q ss_pred             cCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          80 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      +-++..+..++..++..-...+.     .-.-|..+|++||||||||++|+++|+..        ..+|+.+--+++   
T Consensus       513 IGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa--------g~NFisVKGPEL---  581 (802)
T KOG0733|consen  513 IGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA--------GANFISVKGPEL---  581 (802)
T ss_pred             cccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc--------cCceEeecCHHH---
Confidence            34456566566555543211111     02346689999999999999999999882        248888865554   


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhC---CCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceE-EE
Q psy1694         155 NENHVSLYRLQLTNWIISNVTAC---DRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTI-FL  219 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~---~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~i-fI  219 (247)
                          ...|.++.+..++..+.++   ..+|+||||+|.|-|           -+.+.||.-||.-      +-|+.+ +|
T Consensus       582 ----lNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl------~~R~gV~vi  651 (802)
T KOG0733|consen  582 ----LNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGL------EERRGVYVI  651 (802)
T ss_pred             ----HHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccc------ccccceEEE
Confidence                4556666666666666654   349999999999865           3678888777753      224444 45


Q ss_pred             EEeCCChHHHH
Q psy1694         220 FLSNSGGTEIM  230 (247)
Q Consensus       220 ~tSN~g~~~i~  230 (247)
                      ..||. ++.|.
T Consensus       652 aATNR-PDiID  661 (802)
T KOG0733|consen  652 AATNR-PDIID  661 (802)
T ss_pred             eecCC-Ccccc
Confidence            55565 34343

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.28  E-value=3.8e-11  Score=113.48  Aligned_cols=154  Identities=19%  Similarity=0.242  Sum_probs=86.4

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhcccc--CCCCCcceeeecccc
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK--DKGTSRFVHKFNSRI  151 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~--~g~~~~~v~~~~~~l  151 (247)
                      .+.|.+..++.+.+++......+.     .-..|..++|+||||||||++|+++|+.+.....  .+....|+.+..+++
T Consensus       183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eL  262 (512)
T TIGR03689       183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPEL  262 (512)
T ss_pred             HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhh
Confidence            378899999999988864221110     0234557999999999999999999999744100  011223333333332


Q ss_pred             cCCCCChHHHHHHHHHHHHH---HHHHhCCCeEEEEeCCCCCCh------------hhHHHHHhhcccCcccccccCCce
Q psy1694         152 HFPNENHVSLYRLQLTNWII---SNVTACDRAIFIFDEVDKFPK------------GLLDVIIPFIDHHAVYNQISFQNT  216 (247)
Q Consensus       152 ~~~~~~~v~~~~~~l~~~~~---~~l~~~~~~vlilDEiek~~~------------~~~~~Ll~~Le~~~~~~~~~~~~~  216 (247)
                      ..   .+++.....+...+.   .........++||||+|.+-.            .+.+.|+..|+.-.     +..+.
T Consensus       263 l~---kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~-----~~~~V  334 (512)
T TIGR03689       263 LN---KYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE-----SLDNV  334 (512)
T ss_pred             cc---cccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc-----cCCce
Confidence            11   122222222222221   111223458999999998732            13456666666421     23578


Q ss_pred             EEEEEeCCChHHHHHHHHHHHHcCcccc
Q psy1694         217 IFLFLSNSGGTEIMNTFLELRKSGERYI  244 (247)
Q Consensus       217 ifI~tSN~g~~~i~~~~~~~~~~g~~Re  244 (247)
                      ++|++||.. +.|..   ..++.||+..
T Consensus       335 iVI~ATN~~-d~LDp---ALlRpGRfD~  358 (512)
T TIGR03689       335 IVIGASNRE-DMIDP---AILRPGRLDV  358 (512)
T ss_pred             EEEeccCCh-hhCCH---hhcCccccce
Confidence            999999983 33332   2345566643

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.27  E-value=3.1e-11  Score=114.00  Aligned_cols=130  Identities=17%  Similarity=0.231  Sum_probs=82.2

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee-eecc--------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH-KFNS--------  149 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~-~~~~--------  149 (247)
                      .++||+.+++.+.+++....       -+-.++|+||+|+|||++|+.+|+.+.+..... ..|+-. .+|.        
T Consensus        17 diiGq~~i~~~L~~~i~~~~-------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~-~~pc~~c~nc~~i~~g~~~   88 (486)
T PRK14953         17 EVIGQEIVVRILKNAVKLQR-------VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQE-GEPCGKCENCVEIDKGSFP   88 (486)
T ss_pred             HccChHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCC-CCCCCccHHHHHHhcCCCC
Confidence            48999999998888886421       222578999999999999999999987511011 112111 1111        


Q ss_pred             ---cccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         150 ---RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       150 ---~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                         +++.+....++..+ .+.+.+...-....+.|+|+||+++|+.+.++.|++.|++.+       ..++||+++|.
T Consensus        89 d~~eidaas~~gvd~ir-~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp-------~~~v~Il~tt~  158 (486)
T PRK14953         89 DLIEIDAASNRGIDDIR-ALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPP-------PRTIFILCTTE  158 (486)
T ss_pred             cEEEEeCccCCCHHHHH-HHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCC-------CCeEEEEEECC
Confidence               11111112222111 122222111112345899999999999999999999999975       56788888754

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.26  E-value=4.4e-11  Score=115.82  Aligned_cols=127  Identities=19%  Similarity=0.249  Sum_probs=83.9

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCc------c------eee
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR------F------VHK  146 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~------~------v~~  146 (247)
                      .++||+.+++.+.+.+...       .-|-.++|+||+|+|||++|+++|+.+.+........+      |      .+.
T Consensus        18 ~viGq~~~~~~L~~~i~~~-------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~   90 (614)
T PRK14971         18 SVVGQEALTTTLKNAIATN-------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSY   90 (614)
T ss_pred             HhcCcHHHHHHHHHHHHcC-------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCC
Confidence            4999999999888887642       13336899999999999999999999875100000000      0      111


Q ss_pred             ecccccCCCCChHHHHHHHHHHHHHHHHH----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694         147 FNSRIHFPNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  222 (247)
Q Consensus       147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS  222 (247)
                      +..++++.....+..    +...+ ..+.    ..++.++||||++.|+.+.++.|+++||+.+       .+++||+++
T Consensus        91 n~~~ld~~~~~~vd~----Ir~li-~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp-------~~tifIL~t  158 (614)
T PRK14971         91 NIHELDAASNNSVDD----IRNLI-EQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP-------SYAIFILAT  158 (614)
T ss_pred             ceEEecccccCCHHH----HHHHH-HHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC-------CCeEEEEEe
Confidence            222222221222222    22222 1122    2356899999999999999999999999976       678999988


Q ss_pred             CC
Q psy1694         223 NS  224 (247)
Q Consensus       223 N~  224 (247)
                      +.
T Consensus       159 t~  160 (614)
T PRK14971        159 TE  160 (614)
T ss_pred             CC
Confidence            74

>PRK13342 recombination factor protein RarA; Reviewed

Probab=99.26  E-value=3.6e-11  Score=111.63  Aligned_cols=105  Identities=23%  Similarity=0.316  Sum_probs=70.2

Q ss_pred             hcCChHHHHHH---HHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694          79 HVHGQELAISH---ICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN  155 (247)
Q Consensus        79 ~l~Gq~~a~~~---l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~  155 (247)
                      .++||+..+..   +.+.+..    .    ++-.++|+||||||||++|+.+++.+..        +|+.+++...    
T Consensus        13 d~vGq~~~v~~~~~L~~~i~~----~----~~~~ilL~GppGtGKTtLA~~ia~~~~~--------~~~~l~a~~~----   72 (413)
T PRK13342         13 EVVGQEHLLGPGKPLRRMIEA----G----RLSSMILWGPPGTGKTTLARIIAGATDA--------PFEALSAVTS----   72 (413)
T ss_pred             HhcCcHHHhCcchHHHHHHHc----C----CCceEEEECCCCCCHHHHHHHHHHHhCC--------CEEEEecccc----
Confidence            38999988765   5555532    1    2226789999999999999999887432        5666665321    


Q ss_pred             CChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694         156 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA  206 (247)
Q Consensus       156 ~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~  206 (247)
                        .+...+..+. ..........+.++||||+++++...++.|++.++++.
T Consensus        73 --~~~~ir~ii~-~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~  120 (413)
T PRK13342         73 --GVKDLREVIE-EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGT  120 (413)
T ss_pred             --cHHHHHHHHH-HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCc
Confidence              1121222111 11111222356899999999999999999999999854

>PRK12377 putative replication protein; Provisional

Probab=99.26  E-value=1.1e-10  Score=101.16  Aligned_cols=129  Identities=18%  Similarity=0.229  Sum_probs=76.8

Q ss_pred             ChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHH
Q psy1694          82 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSL  161 (247)
Q Consensus        82 Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~  161 (247)
                      ||..+.....+.+..+....      ..++|+||||||||++|.+|++.+..   .+...  +.+..+++.....   ..
T Consensus        82 ~~~~a~~~a~~~a~~~~~~~------~~l~l~G~~GtGKThLa~AIa~~l~~---~g~~v--~~i~~~~l~~~l~---~~  147 (248)
T PRK12377         82 GQRYALSQAKSIADELMTGC------TNFVFSGKPGTGKNHLAAAIGNRLLA---KGRSV--IVVTVPDVMSRLH---ES  147 (248)
T ss_pred             hHHHHHHHHHHHHHHHHhcC------CeEEEECCCCCCHHHHHHHHHHHHHH---cCCCe--EEEEHHHHHHHHH---HH
Confidence            34444444444444443222      26899999999999999999999876   44322  2333322210000   00


Q ss_pred             HHH-HHHHHHHHHHHhCCCeEEEEeCC--CCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694         162 YRL-QLTNWIISNVTACDRAIFIFDEV--DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT  232 (247)
Q Consensus       162 ~~~-~l~~~~~~~l~~~~~~vlilDEi--ek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~  232 (247)
                      |.. .....+...+  ....+|||||+  +...+..++.|.++++.+.-      .+..+|+|||.+.+++.+.
T Consensus       148 ~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~------~~~ptiitSNl~~~~l~~~  213 (248)
T PRK12377        148 YDNGQSGEKFLQEL--CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTA------SMRSVGMLTNLNHEAMSTL  213 (248)
T ss_pred             HhccchHHHHHHHh--cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHh------cCCCEEEEcCCCHHHHHHH
Confidence            100 0011122223  33489999999  55567888999999998531      2457899999998886653

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=99.26  E-value=6.9e-11  Score=105.76  Aligned_cols=128  Identities=13%  Similarity=0.163  Sum_probs=83.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++||+.+++.+.+.+...       +-|-.++|+||.|+||+++|+.+|+.+++....+....+..+...  .+. .-.
T Consensus         5 ~i~g~~~~~~~l~~~~~~~-------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~--~~~-~i~   74 (313)
T PRK05564          5 TIIGHENIKNRIKNSIIKN-------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI--NKK-SIG   74 (313)
T ss_pred             hccCcHHHHHHHHHHHHcC-------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--cCC-CCC
Confidence            4889999999888877531       134468999999999999999999998762111111122222110  111 111


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         159 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       159 v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      ++..++ +...+...-...++.|+|+||+|+|..+.+++|++.||+++       .+++||++|+.
T Consensus        75 v~~ir~-~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp-------~~t~~il~~~~  132 (313)
T PRK05564         75 VDDIRN-IIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPP-------KGVFIILLCEN  132 (313)
T ss_pred             HHHHHH-HHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCC-------CCeEEEEEeCC
Confidence            221111 11111111123456899999999999999999999999977       78889988864

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.25  E-value=5.5e-11  Score=105.61  Aligned_cols=105  Identities=14%  Similarity=0.236  Sum_probs=70.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++||+..++.+...+......+   ..|-.++|+||||||||++|+.+|+.+..        ++.....+..     ..
T Consensus         5 ~~iG~~~~~~~l~~~l~~~~~~~---~~~~~~ll~Gp~G~GKT~la~~ia~~~~~--------~~~~~~~~~~-----~~   68 (305)
T TIGR00635         5 EFIGQEKVKEQLQLFIEAAKMRQ---EALDHLLLYGPPGLGKTTLAHIIANEMGV--------NLKITSGPAL-----EK   68 (305)
T ss_pred             HHcCHHHHHHHHHHHHHHHHhcC---CCCCeEEEECCCCCCHHHHHHHHHHHhCC--------CEEEeccchh-----cC
Confidence            48999999999888776543332   24446899999999999999999988532        2222221111     01


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694         159 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA  206 (247)
Q Consensus       159 v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~  206 (247)
                      .+    .+.+.+. .  .....++||||++.+++..++.|+..+++..
T Consensus        69 ~~----~l~~~l~-~--~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~  109 (305)
T TIGR00635        69 PG----DLAAILT-N--LEEGDVLFIDEIHRLSPAVEELLYPAMEDFR  109 (305)
T ss_pred             ch----hHHHHHH-h--cccCCEEEEehHhhhCHHHHHHhhHHHhhhh
Confidence            11    1122221 1  1245899999999999999999999988754

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=99.25  E-value=6.9e-11  Score=106.95  Aligned_cols=129  Identities=19%  Similarity=0.258  Sum_probs=80.9

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcce------------e
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFV------------H  145 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v------------~  145 (247)
                      .++||+.+++.+.+.+...       ..|-.++|+||+|+|||++|+.+++.+.+.  .+. ..++-            +
T Consensus        15 ~iig~~~~~~~l~~~~~~~-------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~--~~~~~~~c~~c~~c~~~~~~~~   85 (355)
T TIGR02397        15 DVIGQEHIVQTLKNAIKNG-------RIAHAYLFSGPRGTGKTSIARIFAKALNCQ--NGPDGEPCNECESCKEINSGSS   85 (355)
T ss_pred             hccCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcCC--CCCCCCCCCCCHHHHHHhcCCC
Confidence            4899999999888877531       133468999999999999999999998751  110 01110            0


Q ss_pred             eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         146 KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       146 ~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      .+..++.......+...+. +.+.+...-...++.++++||+|.++...++.|++.+++.+       .+++||+++|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~-l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~-------~~~~lIl~~~~  156 (355)
T TIGR02397        86 LDVIEIDAASNNGVDDIRE-ILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPP-------EHVVFILATTE  156 (355)
T ss_pred             CCEEEeeccccCCHHHHHH-HHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCc-------cceeEEEEeCC
Confidence            0111111111111221221 11112111112345899999999999999999999998865       57788888865

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.25  E-value=3.7e-11  Score=104.37  Aligned_cols=122  Identities=16%  Similarity=0.245  Sum_probs=81.8

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  157 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~  157 (247)
                      ..+||+.+++.+.=.++......    .++ .+||+||||.|||++|..+|+.+-.        ++...     .+|.-.
T Consensus        27 efiGQ~~vk~~L~ifI~AAk~r~----e~lDHvLl~GPPGlGKTTLA~IIA~Emgv--------n~k~t-----sGp~le   89 (332)
T COG2255          27 EFIGQEKVKEQLQIFIKAAKKRG----EALDHVLLFGPPGLGKTTLAHIIANELGV--------NLKIT-----SGPALE   89 (332)
T ss_pred             HhcChHHHHHHHHHHHHHHHhcC----CCcCeEEeeCCCCCcHHHHHHHHHHHhcC--------CeEec-----cccccc
Confidence            48999999998877776543222    233 4899999999999999999999643        22111     122211


Q ss_pred             hHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCCCCChhhHHHHHhhcccCccc--cc---------ccCCceEEEEEeCCC
Q psy1694         158 HVSLYRLQLTNWIISNVTA-CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY--NQ---------ISFQNTIFLFLSNSG  225 (247)
Q Consensus       158 ~v~~~~~~l~~~~~~~l~~-~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~--~~---------~~~~~~ifI~tSN~g  225 (247)
                      ..+    .+.    ..+.. .+++|+|+|||+++++.+-..|.++||...+-  .+         .|.....+|..|...
T Consensus        90 K~g----Dla----aiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~  161 (332)
T COG2255          90 KPG----DLA----AILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRA  161 (332)
T ss_pred             Chh----hHH----HHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecccc
Confidence            112    122    22332 45799999999999999999999999997632  11         266666667665543

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.24  E-value=6.1e-11  Score=114.59  Aligned_cols=131  Identities=15%  Similarity=0.198  Sum_probs=81.4

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee------------e
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH------------K  146 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~------------~  146 (247)
                      .++||+.+++.+.+.+...-       .+-.++|+||+|+|||++|+.+++.+.+........+|-.            .
T Consensus        17 eiiGq~~~~~~L~~~i~~~~-------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~   89 (585)
T PRK14950         17 ELVGQEHVVQTLRNAIAEGR-------VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAV   89 (585)
T ss_pred             HhcCCHHHHHHHHHHHHhCC-------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCC
Confidence            49999999998887776421       2335799999999999999999999875110111111100            0


Q ss_pred             ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         147 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      +.-++.......++..++ +.+.+...-....+.|+||||+++|+.+.++.|++.|++..       .+++||++++.
T Consensus        90 d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp-------~~tv~Il~t~~  159 (585)
T PRK14950         90 DVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPP-------PHAIFILATTE  159 (585)
T ss_pred             eEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC-------CCeEEEEEeCC
Confidence            000111101111222211 11122111112456999999999999999999999999965       57788888764

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=99.24  E-value=1.2e-10  Score=105.96  Aligned_cols=132  Identities=17%  Similarity=0.266  Sum_probs=83.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhcccc-----CCCCCcc-eeeec----
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRF-VHKFN----  148 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~-----~g~~~~~-v~~~~----  148 (247)
                      .++||+.+.+.+..++....       .|-.++|+||+|+|||++|+.+|+.+.+...     .+...++ ..-.|    
T Consensus        24 ~l~Gh~~a~~~L~~a~~~gr-------l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~   96 (351)
T PRK09112         24 RLFGHEEAEAFLAQAYREGK-------LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA   96 (351)
T ss_pred             hccCcHHHHHHHHHHHHcCC-------CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence            49999999999988887431       3336899999999999999999999877210     0000010 00000    


Q ss_pred             ----cc---ccCC--CC-----C--hHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccccc
Q psy1694         149 ----SR---IHFP--NE-----N--HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQIS  212 (247)
Q Consensus       149 ----~~---l~~~--~~-----~--~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~  212 (247)
                          +.   +..+  .+     .  .++..+ .+.+.+...-....+.|+||||+|+|++..++.|++.||+.+      
T Consensus        97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp------  169 (351)
T PRK09112         97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP------  169 (351)
T ss_pred             cCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC------
Confidence                00   1001  11     0  112111 122222111123456899999999999999999999999976      


Q ss_pred             CCceEEEEEeCCC
Q psy1694         213 FQNTIFLFLSNSG  225 (247)
Q Consensus       213 ~~~~ifI~tSN~g  225 (247)
                       .+++||++|+..
T Consensus       170 -~~~~fiLit~~~  181 (351)
T PRK09112        170 -ARALFILISHSS  181 (351)
T ss_pred             -CCceEEEEECCh
Confidence             678888888764

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=99.24  E-value=2e-11  Score=110.04  Aligned_cols=149  Identities=19%  Similarity=0.278  Sum_probs=91.8

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec
Q psy1694          69 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN  148 (247)
Q Consensus        69 ~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~  148 (247)
                      ...++..+...++|++.++..+..++.   ...       .++|.||||||||++|+.+|+.+-        .+|+++.|
T Consensus        15 ~~~~~~~~~~~~~g~~~~~~~~l~a~~---~~~-------~vll~G~PG~gKT~la~~lA~~l~--------~~~~~i~~   76 (329)
T COG0714          15 LGKIRSELEKVVVGDEEVIELALLALL---AGG-------HVLLEGPPGVGKTLLARALARALG--------LPFVRIQC   76 (329)
T ss_pred             HHHHHhhcCCeeeccHHHHHHHHHHHH---cCC-------CEEEECCCCccHHHHHHHHHHHhC--------CCeEEEec
Confidence            344556666678998877766655443   222       469999999999999999999853        37888887


Q ss_pred             ccccCCCCChHHHH--HHHHH-H----HHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccC-----Cce
Q psy1694         149 SRIHFPNENHVSLY--RLQLT-N----WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISF-----QNT  216 (247)
Q Consensus       149 ~~l~~~~~~~v~~~--~~~l~-~----~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~-----~~~  216 (247)
                      ..-..|. ..++.+  ..... .    ...+-+-.+..+++++|||++.++.+|+.|+++|++++++..-..     ...
T Consensus        77 t~~l~p~-d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f  155 (329)
T COG0714          77 TPDLLPS-DLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPF  155 (329)
T ss_pred             CCCCCHH-HhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCC
Confidence            4321111 111111  11100 0    011111111114999999999999999999999999876543222     355


Q ss_pred             EEEEEeCC----ChHHHHHHHHHH
Q psy1694         217 IFLFLSNS----GGTEIMNTFLEL  236 (247)
Q Consensus       217 ifI~tSN~----g~~~i~~~~~~~  236 (247)
                      ++|.|+|.    |...+++.+++.
T Consensus       156 ~viaT~Np~e~~g~~~l~eA~ldR  179 (329)
T COG0714         156 IVIATQNPGEYEGTYPLPEALLDR  179 (329)
T ss_pred             EEEEccCccccCCCcCCCHHHHhh
Confidence            67777784    444445544443

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.24  E-value=1.1e-10  Score=106.50  Aligned_cols=128  Identities=17%  Similarity=0.208  Sum_probs=80.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcce--eeecccccCCCC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV--HKFNSRIHFPNE  156 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v--~~~~~~l~~~~~  156 (247)
                      .++||+.+++.+.+.++..       ..|.+++|+||+|+|||++|+.+++.+.+   .+...+..  ..+.-++.....
T Consensus        18 ~iig~~~~~~~l~~~i~~~-------~~~~~~L~~G~~G~GKt~~a~~la~~l~~---~~~~~~~~~~~~~~~~l~~~~~   87 (367)
T PRK14970         18 DVVGQSHITNTLLNAIENN-------HLAQALLFCGPRGVGKTTCARILARKINQ---PGYDDPNEDFSFNIFELDAASN   87 (367)
T ss_pred             hcCCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcC---CCCCCCCCCCCcceEEeccccC
Confidence            4899999998888777641       13447899999999999999999999876   33211110  111111111111


Q ss_pred             ChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         157 NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       157 ~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      ..+...+.. .......-...++.+|++||++.+....++.|++.+++.+       ..++||+++|.
T Consensus        88 ~~~~~i~~l-~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~-------~~~~~Il~~~~  147 (367)
T PRK14970         88 NSVDDIRNL-IDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPP-------AHAIFILATTE  147 (367)
T ss_pred             CCHHHHHHH-HHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCC-------CceEEEEEeCC
Confidence            111211111 1111000112345899999999999999999999998854       56788888764

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=99.23  E-value=1.1e-10  Score=106.52  Aligned_cols=133  Identities=14%  Similarity=0.173  Sum_probs=83.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCC-----c----c-eeeec
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS-----R----F-VHKFN  148 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~-----~----~-v~~~~  148 (247)
                      .++||+.+++.+.+++.+..       .|-.++|+||+|+||+++|..+|+.+++....+...     +    + ..-.|
T Consensus        20 ~iiGq~~~~~~L~~~~~~~r-------l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c   92 (365)
T PRK07471         20 ALFGHAAAEAALLDAYRSGR-------LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA   92 (365)
T ss_pred             hccChHHHHHHHHHHHHcCC-------CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence            49999999999988877521       344689999999999999999999998721111000     0    0 00000


Q ss_pred             --------ccccC--C---CCCh--HHHH-HHHHHHHHHHHHH----hCCCeEEEEeCCCCCChhhHHHHHhhcccCccc
Q psy1694         149 --------SRIHF--P---NENH--VSLY-RLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY  208 (247)
Q Consensus       149 --------~~l~~--~---~~~~--v~~~-~~~l~~~~~~~l~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~  208 (247)
                              +.++.  +   +.+.  -... .+++. .+...+.    ...+.|++|||+|.|++..++.|++.+++.+  
T Consensus        93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp--  169 (365)
T PRK07471         93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP--  169 (365)
T ss_pred             HHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC--
Confidence                    11110  1   1110  0000 11111 1212222    2345899999999999999999999999976  


Q ss_pred             ccccCCceEEEEEeCCCh
Q psy1694         209 NQISFQNTIFLFLSNSGG  226 (247)
Q Consensus       209 ~~~~~~~~ifI~tSN~g~  226 (247)
                           .+++||++|+...
T Consensus       170 -----~~~~~IL~t~~~~  182 (365)
T PRK07471        170 -----ARSLFLLVSHAPA  182 (365)
T ss_pred             -----CCeEEEEEECCch
Confidence                 6778888887654

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=99.23  E-value=5.9e-11  Score=107.07  Aligned_cols=128  Identities=14%  Similarity=0.326  Sum_probs=82.0

Q ss_pred             hcCC-hHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcc------eeee---c
Q psy1694          79 HVHG-QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRF------VHKF---N  148 (247)
Q Consensus        79 ~l~G-q~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~------v~~~---~  148 (247)
                      .|.| |+.+++.+.+.+...       +-|-.++|+||+|+||+++|+.+|+.+++....+ ..++      ..+.   .
T Consensus         6 ~i~~~q~~~~~~L~~~~~~~-------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~-~~~cg~C~~c~~~~~~~h   77 (329)
T PRK08058          6 QLTALQPVVVKMLQNSIAKN-------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNG-VEPCGTCTNCKRIDSGNH   77 (329)
T ss_pred             HHHhhHHHHHHHHHHHHHcC-------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCcCHHHHHHhcCCC
Confidence            4667 888888888777531       1344689999999999999999999988721000 0110      0000   0


Q ss_pred             ccccC--CCCChHHHHHHHHHHHHHHHHH----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694         149 SRIHF--PNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  222 (247)
Q Consensus       149 ~~l~~--~~~~~v~~~~~~l~~~~~~~l~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS  222 (247)
                      +.+.+  +....++  .+++.+.. ..+.    ..++.|+||||+|+|+...+++|++.|||++       .+++||++|
T Consensus        78 pD~~~i~~~~~~i~--id~ir~l~-~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp-------~~~~~Il~t  147 (329)
T PRK08058         78 PDVHLVAPDGQSIK--KDQIRYLK-EEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPS-------GGTTAILLT  147 (329)
T ss_pred             CCEEEeccccccCC--HHHHHHHH-HHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCC-------CCceEEEEe
Confidence            11111  1111111  11222222 2222    3456899999999999999999999999987       788999998


Q ss_pred             CC
Q psy1694         223 NS  224 (247)
Q Consensus       223 N~  224 (247)
                      +.
T Consensus       148 ~~  149 (329)
T PRK08058        148 EN  149 (329)
T ss_pred             CC
Confidence            74

>KOG2028|consensus

Probab=99.23  E-value=2.9e-11  Score=108.24  Aligned_cols=113  Identities=22%  Similarity=0.337  Sum_probs=70.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      ..+||+..+.+ ...++..+..+.   -| .++|+||||||||++|+.|+..--.     ..-.||.....      ...
T Consensus       139 dyvGQ~hlv~q-~gllrs~ieq~~---ip-SmIlWGppG~GKTtlArlia~tsk~-----~SyrfvelSAt------~a~  202 (554)
T KOG2028|consen  139 DYVGQSHLVGQ-DGLLRSLIEQNR---IP-SMILWGPPGTGKTTLARLIASTSKK-----HSYRFVELSAT------NAK  202 (554)
T ss_pred             HhcchhhhcCc-chHHHHHHHcCC---CC-ceEEecCCCCchHHHHHHHHhhcCC-----CceEEEEEecc------ccc
Confidence            37788776654 333444443332   33 4788999999999999999887222     11124433321      111


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcc
Q psy1694         159 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV  207 (247)
Q Consensus       159 v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~  207 (247)
                      +...++.+++.-........+.|+|+|||+++....|+.++|.+|.+.+
T Consensus       203 t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I  251 (554)
T KOG2028|consen  203 TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDI  251 (554)
T ss_pred             hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCce
Confidence            1222333333222233344569999999999999999999999999864

>KOG0745|consensus

Probab=99.22  E-value=4.6e-11  Score=108.79  Aligned_cols=146  Identities=21%  Similarity=0.279  Sum_probs=98.7

Q ss_pred             cccHHHHHHHHHhhcCChHHHHHHHHHHHHHh---------------hh---c-c------------------cC-----
Q psy1694          66 SSNVRVLEEQLKQHVHGQELAISHICGALKNH---------------FQ---N-R------------------YH-----  103 (247)
Q Consensus        66 ~~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~---------------~~---~-~------------------~~-----  103 (247)
                      .+..+.+-+.|++.++||+.|+..|.=++.++               +.   . .                  .+     
T Consensus       133 ~P~PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~  212 (564)
T KOG0745|consen  133 PPTPKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIA  212 (564)
T ss_pred             CCChHHHHHHhhhheechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhc
Confidence            34567889999999999999987655443321               00   0 0                  00     


Q ss_pred             ---C----C---CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHH---
Q psy1694         104 ---N----T---KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWI---  170 (247)
Q Consensus       104 ---~----~---kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~---  170 (247)
                         +    +   ...++++.||+|+|||++|+.||+.+-        .||+-.+|.++  ...+++++-.+.....+   
T Consensus       213 ~~ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~ld--------VPfaIcDcTtL--TQAGYVGeDVEsvi~KLl~~  282 (564)
T KOG0745|consen  213 KALDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVLD--------VPFAICDCTTL--TQAGYVGEDVESVIQKLLQE  282 (564)
T ss_pred             ccccccccceeeecccEEEECCCCCchhHHHHHHHHHhC--------CCeEEecccch--hhcccccccHHHHHHHHHHH
Confidence               0    0   012689999999999999999999863        48988889887  45566654333222221   


Q ss_pred             -HHHHHhCCCeEEEEeCCCCCC--------------hhhHHHHHhhcccCcccc--------------cccCCceEEEEE
Q psy1694         171 -ISNVTACDRAIFIFDEVDKFP--------------KGLLDVIIPFIDHHAVYN--------------QISFQNTIFLFL  221 (247)
Q Consensus       171 -~~~l~~~~~~vlilDEiek~~--------------~~~~~~Ll~~Le~~~~~~--------------~~~~~~~ifI~t  221 (247)
                       ...+++|..+++||||+||+.              +++|..||++||..-+..              .+|..+..||..
T Consensus       283 A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFias  362 (564)
T KOG0745|consen  283 AEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIAS  362 (564)
T ss_pred             ccCCHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEec
Confidence             134566778999999999985              368999999998643211              147777777765

>KOG0738|consensus

Probab=99.22  E-value=7.1e-11  Score=106.36  Aligned_cols=141  Identities=13%  Similarity=0.187  Sum_probs=93.2

Q ss_pred             hcCChHHHHHHHHHHHHH------hhhcccCCCCC-eEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc
Q psy1694          79 HVHGQELAISHICGALKN------HFQNRYHNTKA-LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI  151 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~------~~~~~~~~~kp-l~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l  151 (247)
                      .|.|-+.|++.|.+++--      +..+-   .+| ..+|++||||||||++|+++|-.. +       ..|+.+..+.+
T Consensus       213 DIagl~~AK~lL~EAVvlPi~mPe~F~Gi---rrPWkgvLm~GPPGTGKTlLAKAvATEc-~-------tTFFNVSsstl  281 (491)
T KOG0738|consen  213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGI---RRPWKGVLMVGPPGTGKTLLAKAVATEC-G-------TTFFNVSSSTL  281 (491)
T ss_pred             hhcchHHHHHHHHHHHhhhhhhHHHHhhc---ccccceeeeeCCCCCcHHHHHHHHHHhh-c-------CeEEEechhhh
Confidence            488999999999988853      22222   244 468999999999999999998772 2       36766665554


Q ss_pred             cCCCCChHHHHHHHHHHHHH---HHHHhCCCeEEEEeCCCCCCh------------hhHHHHHhhcccCcccccccCCce
Q psy1694         152 HFPNENHVSLYRLQLTNWII---SNVTACDRAIFIFDEVDKFPK------------GLLDVIIPFIDHHAVYNQISFQNT  216 (247)
Q Consensus       152 ~~~~~~~v~~~~~~l~~~~~---~~l~~~~~~vlilDEiek~~~------------~~~~~Ll~~Le~~~~~~~~~~~~~  216 (247)
                             +..|++..+..++   +.-+....++|||||||.+-.            -+-+-||..||.-  ....+-++.
T Consensus       282 -------tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~--~~t~e~~k~  352 (491)
T KOG0738|consen  282 -------TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGV--QGTLENSKV  352 (491)
T ss_pred             -------hhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcc--cccccccee
Confidence                   3446554444333   333334459999999988733            3456666666641  222244688


Q ss_pred             EEEEEeCCChHHHHHHHHHHHHc
Q psy1694         217 IFLFLSNSGGTEIMNTFLELRKS  239 (247)
Q Consensus       217 ifI~tSN~g~~~i~~~~~~~~~~  239 (247)
                      +|++.+..-+=+|.+.+++.+++
T Consensus       353 VmVLAATN~PWdiDEAlrRRlEK  375 (491)
T KOG0738|consen  353 VMVLAATNFPWDIDEALRRRLEK  375 (491)
T ss_pred             EEEEeccCCCcchHHHHHHHHhh
Confidence            88888766677777777666553

>PRK08116 hypothetical protein; Validated

Probab=99.22  E-value=5.8e-11  Score=104.18  Aligned_cols=106  Identities=17%  Similarity=0.257  Sum_probs=70.4

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHH-------HHHHHHHHHhCCC
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQL-------TNWIISNVTACDR  179 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l-------~~~~~~~l~~~~~  179 (247)
                      +..++|+|++|||||++|.++++.+..   .+  .+.+.++.+++.       ..++...       ...+...+.  ..
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~---~~--~~v~~~~~~~ll-------~~i~~~~~~~~~~~~~~~~~~l~--~~  179 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIE---KG--VPVIFVNFPQLL-------NRIKSTYKSSGKEDENEIIRSLV--NA  179 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHH---cC--CeEEEEEHHHHH-------HHHHHHHhccccccHHHHHHHhc--CC
Confidence            346899999999999999999999865   43  344445443321       1111100       111222333  34


Q ss_pred             eEEEEeCC--CCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694         180 AIFIFDEV--DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT  232 (247)
Q Consensus       180 ~vlilDEi--ek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~  232 (247)
                      ++|+|||+  ++..+..+..|..+++.+.-      ++..+|+|||..++++.+.
T Consensus       180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~------~~~~~IiTsN~~~~eL~~~  228 (268)
T PRK08116        180 DLLILDDLGAERDTEWAREKVYNIIDSRYR------KGLPTIVTTNLSLEELKNQ  228 (268)
T ss_pred             CEEEEecccCCCCCHHHHHHHHHHHHHHHH------CCCCEEEECCCCHHHHHHH
Confidence            79999999  56677888999999887421      3456999999999887653

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.21  E-value=7.6e-11  Score=107.66  Aligned_cols=130  Identities=16%  Similarity=0.206  Sum_probs=80.7

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .+.|.+..++.+.+.+...+..+.     ....|..++|+||||||||++|+++|+.+..        +|+.+..+.+. 
T Consensus       123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~--------~~~~v~~~~l~-  193 (364)
T TIGR01242       123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--------TFIRVVGSELV-  193 (364)
T ss_pred             HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC--------CEEecchHHHH-
Confidence            589999999999988864332211     1234667999999999999999999887532        56666544331 


Q ss_pred             CCCChHHHHHHHHHHHHHHHH---HhCCCeEEEEeCCCCCC-----------hhhHHHHHhhcccCcccccccCCceEEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNV---TACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQISFQNTIFL  219 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l---~~~~~~vlilDEiek~~-----------~~~~~~Ll~~Le~~~~~~~~~~~~~ifI  219 (247)
                            ..|.+.....+...+   .....++|||||+|.+.           +.++..+..++.+-.-.  .+..+..+|
T Consensus       194 ------~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~--~~~~~v~vI  265 (364)
T TIGR01242       194 ------RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF--DPRGNVKVI  265 (364)
T ss_pred             ------HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC--CCCCCEEEE
Confidence                  112221112222222   33345799999999873           34556666665441100  112477899


Q ss_pred             EEeCCC
Q psy1694         220 FLSNSG  225 (247)
Q Consensus       220 ~tSN~g  225 (247)
                      +|||..
T Consensus       266 ~ttn~~  271 (364)
T TIGR01242       266 AATNRP  271 (364)
T ss_pred             EecCCh
Confidence            999864

Many proteins may score above the trusted cutoff because an internal

>KOG0736|consensus

Probab=99.21  E-value=8.3e-11  Score=113.25  Aligned_cols=98  Identities=20%  Similarity=0.279  Sum_probs=68.8

Q ss_pred             hcCChHHHHHHHHHHHHHhhh-----cccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQ-----NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~-----~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .+-|-+.++..+.+.++--+.     +.. -+|...++|+||||||||++|+++|-. ++       -+|+.+--++   
T Consensus       673 DVGGLeevK~eIldTIqlPL~hpeLfssg-lrkRSGILLYGPPGTGKTLlAKAVATE-cs-------L~FlSVKGPE---  740 (953)
T KOG0736|consen  673 DVGGLEEVKTEILDTIQLPLKHPELFSSG-LRKRSGILLYGPPGTGKTLLAKAVATE-CS-------LNFLSVKGPE---  740 (953)
T ss_pred             cccCHHHHHHHHHHHhcCcccChhhhhcc-ccccceeEEECCCCCchHHHHHHHHhh-ce-------eeEEeecCHH---
Confidence            366788999999998875222     222 334457999999999999999999887 33       2565554333   


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhC---CCeEEEEeCCCCCCh
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTAC---DRAIFIFDEVDKFPK  192 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~---~~~vlilDEiek~~~  192 (247)
                          ....|.++.+.-+++.++++   ..+|+||||+|.+.|
T Consensus       741 ----LLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP  778 (953)
T KOG0736|consen  741 ----LLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAP  778 (953)
T ss_pred             ----HHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCc
Confidence                34556655555555555554   459999999999977

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.21  E-value=9.5e-11  Score=116.03  Aligned_cols=130  Identities=17%  Similarity=0.244  Sum_probs=84.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .+.|++.+++.+.+.+.-....+.     ....|..++|+||||||||++|+++|..+-        .+|+.+..+++..
T Consensus       454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~--------~~fi~v~~~~l~~  525 (733)
T TIGR01243       454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG--------ANFIAVRGPEILS  525 (733)
T ss_pred             hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--------CCEEEEehHHHhh
Confidence            378999999988887763222111     123466799999999999999999988742        4788888766533


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh------------hhHHHHHhhcccCcccccccCCceEEEEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK------------GLLDVIIPFIDHHAVYNQISFQNTIFLFL  221 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~t  221 (247)
                      .   +++.-...+...+ ........+++||||+|.+.+            .+.+.|+..|+.-.     +.++.++|+|
T Consensus       526 ~---~vGese~~i~~~f-~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~-----~~~~v~vI~a  596 (733)
T TIGR01243       526 K---WVGESEKAIREIF-RKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ-----ELSNVVVIAA  596 (733)
T ss_pred             c---ccCcHHHHHHHHH-HHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc-----CCCCEEEEEe
Confidence            2   2221222222222 233445569999999998732            24566666666411     2367899999


Q ss_pred             eCCC
Q psy1694         222 SNSG  225 (247)
Q Consensus       222 SN~g  225 (247)
                      ||..
T Consensus       597 Tn~~  600 (733)
T TIGR01243       597 TNRP  600 (733)
T ss_pred             CCCh
Confidence            9874

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.21  E-value=1.6e-11  Score=96.64  Aligned_cols=106  Identities=17%  Similarity=0.293  Sum_probs=63.5

Q ss_pred             EEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHH------HHHHHHHHHHhCCCeEEE
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQ------LTNWIISNVTACDRAIFI  183 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~------l~~~~~~~l~~~~~~vli  183 (247)
                      ++|.||||||||++|+.+|+.+ .       .+++.+.++.... ....++.|.-.      ..+.+.....  .+.+++
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~-~-------~~~~~i~~~~~~~-~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~   70 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALL-G-------RPVIRINCSSDTT-EEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILV   70 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHH-T-------CEEEEEE-TTTST-HHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHh-h-------cceEEEEeccccc-cccceeeeeeccccccccccccccccc--ceeEEE
Confidence            6899999999999999999986 3       2555555432100 00000000000      0000000011  458999


Q ss_pred             EeCCCCCChhhHHHHHhhcccCccc--cc---ccCC-------ceEEEEEeCCCh
Q psy1694         184 FDEVDKFPKGLLDVIIPFIDHHAVY--NQ---ISFQ-------NTIFLFLSNSGG  226 (247)
Q Consensus       184 lDEiek~~~~~~~~Ll~~Le~~~~~--~~---~~~~-------~~ifI~tSN~g~  226 (247)
                      |||++++++.+++.|++++++++..  ..   ....       +..+|+|+|...
T Consensus        71 lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~  125 (139)
T PF07728_consen   71 LDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD  125 (139)
T ss_dssp             ESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST
T ss_pred             ECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC
Confidence            9999999999999999999998654  11   1222       389999999877

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=99.20  E-value=5.8e-11  Score=115.18  Aligned_cols=118  Identities=19%  Similarity=0.269  Sum_probs=77.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCC----CCCcceeeecccccCC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK----GTSRFVHKFNSRIHFP  154 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g----~~~~~v~~~~~~l~~~  154 (247)
                      .++||+.++..+.+.+..    +    .|..++|+||||||||++|+.+++.....  .+    ...+|+.+++..+...
T Consensus       155 ~iiGqs~~~~~l~~~ia~----~----~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~--~~~~~~~~~~fv~i~~~~l~~d  224 (615)
T TIGR02903       155 EIVGQERAIKALLAKVAS----P----FPQHIILYGPPGVGKTTAARLALEEAKKL--KHTPFAEDAPFVEVDGTTLRWD  224 (615)
T ss_pred             hceeCcHHHHHHHHHHhc----C----CCCeEEEECCCCCCHHHHHHHHHHhhhhc--cCCcccCCCCeEEEechhccCC
Confidence            489999999887655521    1    23368999999999999999997764221  11    2457899988665321


Q ss_pred             CCC----hHHH-----HHHH---HH-----HHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694         155 NEN----HVSL-----YRLQ---LT-----NWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA  206 (247)
Q Consensus       155 ~~~----~v~~-----~~~~---l~-----~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~  206 (247)
                      ...    ..+.     +++.   +.     ....+.+....++++||||++.|++..|+.|+++|++++
T Consensus       225 ~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~  293 (615)
T TIGR02903       225 PREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKR  293 (615)
T ss_pred             HHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCe
Confidence            100    0000     1110   00     011123445667999999999999999999999999875

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.20  E-value=2.6e-10  Score=103.05  Aligned_cols=133  Identities=10%  Similarity=0.114  Sum_probs=82.7

Q ss_pred             HhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHH
Q psy1694          96 NHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT  175 (247)
Q Consensus        96 ~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~  175 (247)
                      +++..+. -+.|+.++|+||||||||++|+++|+.+-        .+|+.++.+++.....+.   -...+...+..+-.
T Consensus       138 n~l~~~~-ik~PlgllL~GPPGcGKTllAraiA~elg--------~~~i~vsa~eL~sk~vGE---sEk~IR~~F~~A~~  205 (413)
T PLN00020        138 NFLALPN-IKVPLILGIWGGKGQGKSFQCELVFKKMG--------IEPIVMSAGELESENAGE---PGKLIRQRYREAAD  205 (413)
T ss_pred             hhhhccC-CCCCeEEEeeCCCCCCHHHHHHHHHHHcC--------CCeEEEEHHHhhcCcCCc---HHHHHHHHHHHHHH
Confidence            3443333 46788999999999999999999999842        378999888875433322   22333333332221


Q ss_pred             ----hCCCeEEEEeCCCCCChh-----------h-HHHHHhhcccCccc--c-----cccCCceEEEEEeCCChHHHHHH
Q psy1694         176 ----ACDRAIFIFDEVDKFPKG-----------L-LDVIIPFIDHHAVY--N-----QISFQNTIFLFLSNSGGTEIMNT  232 (247)
Q Consensus       176 ----~~~~~vlilDEiek~~~~-----------~-~~~Ll~~Le~~~~~--~-----~~~~~~~ifI~tSN~g~~~i~~~  232 (247)
                          +...++|||||||.+-+.           + ...|+..+|....+  +     ....+++.+|.|+|.... |   
T Consensus       206 ~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~-L---  281 (413)
T PLN00020        206 IIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFST-L---  281 (413)
T ss_pred             HhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCccc-C---
Confidence                123489999999977541           1 25677777753211  1     123467888889886432 1   


Q ss_pred             HHHHHHcCcccc
Q psy1694         233 FLELRKSGERYI  244 (247)
Q Consensus       233 ~~~~~~~g~~Re  244 (247)
                      --.+++.||+..
T Consensus       282 DpALlRpGRfDk  293 (413)
T PLN00020        282 YAPLIRDGRMEK  293 (413)
T ss_pred             CHhHcCCCCCCc
Confidence            124456666644

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.19  E-value=1.3e-10  Score=107.25  Aligned_cols=149  Identities=15%  Similarity=0.214  Sum_probs=88.7

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .+.|.+..++.+.+.+.-.+..+.     ....|..++|+||||||||++|+++|+.+.        .+|+.+..+.+..
T Consensus       146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~--------~~fi~i~~s~l~~  217 (398)
T PTZ00454        146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT--------ATFIRVVGSEFVQ  217 (398)
T ss_pred             HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--------CCEEEEehHHHHH
Confidence            488999999999988864332221     123566899999999999999999998743        3677776544311


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC-----------hhhHHHHHhhcccCcccccc-cCCceEEEEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQI-SFQNTIFLFL  221 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~-----------~~~~~~Ll~~Le~~~~~~~~-~~~~~ifI~t  221 (247)
                         .+++.-...+...+ ........+++||||+|.+.           ..++..+..++..-   ++. ...+..+|++
T Consensus       218 ---k~~ge~~~~lr~lf-~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~l---d~~~~~~~v~VI~a  290 (398)
T PTZ00454        218 ---KYLGEGPRMVRDVF-RLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQM---DGFDQTTNVKVIMA  290 (398)
T ss_pred             ---HhcchhHHHHHHHH-HHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHh---hccCCCCCEEEEEe
Confidence               11111111222222 22334456899999999763           23445555554431   111 1246788999


Q ss_pred             eCCChHHHHHHHHHHHHcCcccccC
Q psy1694         222 SNSGGTEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       222 SN~g~~~i~~~~~~~~~~g~~Re~~  246 (247)
                      ||.. +.|...   .++.|++...|
T Consensus       291 TN~~-d~LDpA---llR~GRfd~~I  311 (398)
T PTZ00454        291 TNRA-DTLDPA---LLRPGRLDRKI  311 (398)
T ss_pred             cCCc-hhCCHH---HcCCCcccEEE
Confidence            9863 334332   34567765443

>PRK04195 replication factor C large subunit; Provisional

Probab=99.19  E-value=1.6e-10  Score=109.24  Aligned_cols=116  Identities=19%  Similarity=0.249  Sum_probs=78.9

Q ss_pred             cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChH
Q psy1694          80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV  159 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v  159 (247)
                      ++||+.+++.+.+.+..+..+.    .+..++|+||||||||++|+++|+.+.        -+++.++.+...     ..
T Consensus        16 lvg~~~~~~~l~~~l~~~~~g~----~~~~lLL~GppG~GKTtla~ala~el~--------~~~ielnasd~r-----~~   78 (482)
T PRK04195         16 VVGNEKAKEQLREWIESWLKGK----PKKALLLYGPPGVGKTSLAHALANDYG--------WEVIELNASDQR-----TA   78 (482)
T ss_pred             hcCCHHHHHHHHHHHHHHhcCC----CCCeEEEECCCCCCHHHHHHHHHHHcC--------CCEEEEcccccc-----cH
Confidence            8999999999999888776321    134689999999999999999999852        245666654421     11


Q ss_pred             HHHHHHHHHHHHHHHH-----hCCCeEEEEeCCCCCCh----hhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         160 SLYRLQLTNWIISNVT-----ACDRAIFIFDEVDKFPK----GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       160 ~~~~~~l~~~~~~~l~-----~~~~~vlilDEiek~~~----~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                      .    .+...+.....     ...+.+|||||+|.+..    +.++.|+..+++.         +..+|+++|..
T Consensus        79 ~----~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~---------~~~iIli~n~~  140 (482)
T PRK04195         79 D----VIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA---------KQPIILTANDP  140 (482)
T ss_pred             H----HHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC---------CCCEEEeccCc
Confidence            1    11111211111     12468999999999976    6688898888863         34567777654

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.18  E-value=1.3e-10  Score=110.28  Aligned_cols=129  Identities=16%  Similarity=0.169  Sum_probs=77.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .+.|++.+++.+.+.+.- +..+.     ....|..++|+||||||||++|+++|..+.        .+|+.++++.+..
T Consensus        56 di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--------~~~~~i~~~~~~~  126 (495)
T TIGR01241        56 DVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--------VPFFSISGSDFVE  126 (495)
T ss_pred             HhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--------CCeeeccHHHHHH
Confidence            388999999888776652 22110     023456799999999999999999988742        3677776554311


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCceEEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFL  219 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI  219 (247)
                      ...   +.-...+...+. .......+||||||+|.+..              ..++.|+..|+...     +..+.++|
T Consensus       127 ~~~---g~~~~~l~~~f~-~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~-----~~~~v~vI  197 (495)
T TIGR01241       127 MFV---GVGASRVRDLFE-QAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-----TNTGVIVI  197 (495)
T ss_pred             HHh---cccHHHHHHHHH-HHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc-----CCCCeEEE
Confidence            100   000112222222 22334458999999988743              23344555554321     22457888


Q ss_pred             EEeCCC
Q psy1694         220 FLSNSG  225 (247)
Q Consensus       220 ~tSN~g  225 (247)
                      .+||..
T Consensus       198 ~aTn~~  203 (495)
T TIGR01241       198 AATNRP  203 (495)
T ss_pred             EecCCh
Confidence            888874

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.17  E-value=2.3e-10  Score=103.09  Aligned_cols=124  Identities=12%  Similarity=0.174  Sum_probs=79.2

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++||+..++.+...+........   .+..++|+||||||||++|+.+|+.+..        .+.....+.+.     .
T Consensus        26 ~~vG~~~~~~~l~~~l~~~~~~~~---~~~~~ll~GppG~GKT~la~~ia~~l~~--------~~~~~~~~~~~-----~   89 (328)
T PRK00080         26 EFIGQEKVKENLKIFIEAAKKRGE---ALDHVLLYGPPGLGKTTLANIIANEMGV--------NIRITSGPALE-----K   89 (328)
T ss_pred             HhcCcHHHHHHHHHHHHHHHhcCC---CCCcEEEECCCCccHHHHHHHHHHHhCC--------CeEEEeccccc-----C
Confidence            489999999988877765433221   2336899999999999999999998532        23222222110     1


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccc----ccc-------cCCceEEEEEeCCC
Q psy1694         159 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY----NQI-------SFQNTIFLFLSNSG  225 (247)
Q Consensus       159 v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~----~~~-------~~~~~ifI~tSN~g  225 (247)
                      .+    .+...+. .  ...++++||||++.++...++.+...+++....    .+.       ......+|+++|..
T Consensus        90 ~~----~l~~~l~-~--l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~  160 (328)
T PRK00080         90 PG----DLAAILT-N--LEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRA  160 (328)
T ss_pred             hH----HHHHHHH-h--cccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCc
Confidence            11    1122221 1  235689999999999999999998888875421    111       22345677777653

>KOG0730|consensus

Probab=99.17  E-value=8.4e-11  Score=111.70  Aligned_cols=126  Identities=17%  Similarity=0.229  Sum_probs=82.7

Q ss_pred             cCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          80 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      +-|++..++.+.+++.--...+.     .-+.|..+||+||||||||++|+++|+..        .-+|+.+..++++- 
T Consensus       436 IGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~--------~~nFlsvkgpEL~s-  506 (693)
T KOG0730|consen  436 IGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA--------GMNFLSVKGPELFS-  506 (693)
T ss_pred             ccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh--------cCCeeeccCHHHHH-
Confidence            56699999888887753221111     02356689999999999999999998873        24888887766642 


Q ss_pred             CCChHHHHHHHHHHHHHHHHH---hCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEE
Q psy1694         155 NENHVSLYRLQLTNWIISNVT---ACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLF  220 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~---~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~  220 (247)
                            .|.++-+..+...+.   .+..+|+||||||.+..           -+++.||.-||.-.     .-+++++|.
T Consensus       507 ------k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e-----~~k~V~ViA  575 (693)
T KOG0730|consen  507 ------KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE-----ALKNVLVIA  575 (693)
T ss_pred             ------HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc-----ccCcEEEEe
Confidence                  233333333433333   34449999999987743           25666776666532     225777777


Q ss_pred             EeCCC
Q psy1694         221 LSNSG  225 (247)
Q Consensus       221 tSN~g  225 (247)
                      .||..
T Consensus       576 ATNRp  580 (693)
T KOG0730|consen  576 ATNRP  580 (693)
T ss_pred             ccCCh
Confidence            77774

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=99.16  E-value=5e-11  Score=107.88  Aligned_cols=149  Identities=17%  Similarity=0.145  Sum_probs=85.3

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee------ccccc
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF------NSRIH  152 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~------~~~l~  152 (247)
                      .++||+.++..+...+..    +    +.-.++|.|++|||||++||.+++.+... +--...||....      ++..+
T Consensus        18 ~ivGq~~~k~al~~~~~~----p----~~~~vli~G~~GtGKs~~ar~~~~~l~~~-~~~~~~pf~~~p~~p~~~~~~~~   88 (350)
T CHL00081         18 AIVGQEEMKLALILNVID----P----KIGGVMIMGDRGTGKSTTIRALVDLLPEI-EVVKDDPFNSHPSDPELMSDEVR   88 (350)
T ss_pred             HHhChHHHHHHHHHhccC----C----CCCeEEEEcCCCCCHHHHHHHHHHHHhhc-CccCCCCCCCCCCChhhhchhhh
Confidence            499999988777654432    2    12257899999999999999998886431 000012332000      00000


Q ss_pred             C--------------------CC----CChHHH--HHHHHHHH----HHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhc
Q psy1694         153 F--------------------PN----ENHVSL--YRLQLTNW----IISNVTACDRAIFIFDEVDKFPKGLLDVIIPFI  202 (247)
Q Consensus       153 ~--------------------~~----~~~v~~--~~~~l~~~----~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~L  202 (247)
                      .                    |.    ...++.  ....+.+.    -.+.+.++.++++++||++.+++.+|++|+.+|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam  168 (350)
T CHL00081         89 EAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSA  168 (350)
T ss_pred             hhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHH
Confidence            0                    00    000110  00000100    124456777899999999999999999999999


Q ss_pred             ccCccc---cccc---CCceEEEEEeCCChHHHHHHHHHH
Q psy1694         203 DHHAVY---NQIS---FQNTIFLFLSNSGGTEIMNTFLEL  236 (247)
Q Consensus       203 e~~~~~---~~~~---~~~~ifI~tSN~g~~~i~~~~~~~  236 (247)
                      +++..+   ++..   -.+.++|.|.|.....+.+.+++.
T Consensus       169 ~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldR  208 (350)
T CHL00081        169 ASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDR  208 (350)
T ss_pred             HhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHH
Confidence            986422   2321   135677777775443344444443

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=99.16  E-value=5.1e-10  Score=86.62  Aligned_cols=111  Identities=18%  Similarity=0.244  Sum_probs=68.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHH-HHHHHHHHHHhCCCeEEEEeCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQ-LTNWIISNVTACDRAIFIFDEV  187 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~-l~~~~~~~l~~~~~~vlilDEi  187 (247)
                      .++++||||+|||++++.+++.+..   .  ..+++.+++........  ....... ...............++++||+
T Consensus        21 ~v~i~G~~G~GKT~l~~~i~~~~~~---~--~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lilDe~   93 (151)
T cd00009          21 NLLLYGPPGTGKTTLARAIANELFR---P--GAPFLYLNASDLLEGLV--VAELFGHFLVRLLFELAEKAKPGVLFIDEI   93 (151)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhhc---C--CCCeEEEehhhhhhhhH--HHHHhhhhhHhHHHHhhccCCCeEEEEeCh
Confidence            6889999999999999999988643   2  23555555544311110  0000000 0011112223345699999999


Q ss_pred             CCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694         188 DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  227 (247)
Q Consensus       188 ek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~  227 (247)
                      +.+++.....++..++..... .....++.+|+++|....
T Consensus        94 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~ii~~~~~~~~  132 (151)
T cd00009          94 DSLSRGAQNALLRVLETLNDL-RIDRENVRVIGATNRPLL  132 (151)
T ss_pred             hhhhHHHHHHHHHHHHhcCce-eccCCCeEEEEecCcccc
Confidence            999888888888888874311 122367788999887653

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=99.16  E-value=3.4e-10  Score=93.86  Aligned_cols=109  Identities=15%  Similarity=0.250  Sum_probs=67.2

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcce-eeecccc----------cCCCCChHHHHHHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV-HKFNSRI----------HFPNENHVSLYRLQLTNWIISNV  174 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v-~~~~~~l----------~~~~~~~v~~~~~~l~~~~~~~l  174 (247)
                      -|-.++|+||+|+|||++|+.+++.+.+.. .....++. ..+|..+          ..+.....+  .+.+...+ ..+
T Consensus        13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~-~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~--~~~i~~i~-~~~   88 (188)
T TIGR00678        13 LAHAYLFAGPEGVGKELLALALAKALLCEQ-PGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIK--VDQVRELV-EFL   88 (188)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCC--HHHHHHHH-HHH
Confidence            344689999999999999999999987610 00011110 0001000          001111111  11222212 222


Q ss_pred             H----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         175 T----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       175 ~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                      .    ..++.++|+||+|+|++..++.|+.+||+.+       .+++||+++|..
T Consensus        89 ~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~-------~~~~~il~~~~~  136 (188)
T TIGR00678        89 SRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPP-------PNTLFILITPSP  136 (188)
T ss_pred             ccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCC-------CCeEEEEEECCh
Confidence            2    2456899999999999999999999999965       678899998743

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>KOG0734|consensus

Probab=99.15  E-value=2.8e-10  Score=106.07  Aligned_cols=140  Identities=16%  Similarity=0.170  Sum_probs=87.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccC-----CCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYH-----NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~-----~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .+.|-++|.+.+.+.+. ++.+|..     -+-|..+||+||||||||++||++|-..        ..||++..-++++-
T Consensus       305 dVkG~DEAK~ELeEiVe-fLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA--------~VPFF~~sGSEFdE  375 (752)
T KOG0734|consen  305 DVKGVDEAKQELEEIVE-FLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA--------GVPFFYASGSEFDE  375 (752)
T ss_pred             cccChHHHHHHHHHHHH-HhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc--------CCCeEeccccchhh
Confidence            58999999988766553 3333321     2357789999999999999999996651        35887776666521


Q ss_pred             CCCChHHHHHHHHHHHHHHHH---HhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNV---TACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFL  219 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l---~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI  219 (247)
                         -    |.+.=..+++..+   +.+..+||||||+|....           ..++.||--||...-     ..-.|+|
T Consensus       376 ---m----~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q-----NeGiIvi  443 (752)
T KOG0734|consen  376 ---M----FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ-----NEGIIVI  443 (752)
T ss_pred             ---h----hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc-----CCceEEE
Confidence               1    2111122333333   334459999999988742           346667766765331     1356777


Q ss_pred             EEeCCChHHHHHHHHHHHHcCccc
Q psy1694         220 FLSNSGGTEIMNTFLELRKSGERY  243 (247)
Q Consensus       220 ~tSN~g~~~i~~~~~~~~~~g~~R  243 (247)
                      ..+|.. +.+.+   .+.+-|||.
T Consensus       444 gATNfp-e~LD~---AL~RPGRFD  463 (752)
T KOG0734|consen  444 GATNFP-EALDK---ALTRPGRFD  463 (752)
T ss_pred             eccCCh-hhhhH---HhcCCCccc
Confidence            777874 33333   235566664

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=99.14  E-value=7.1e-10  Score=99.95  Aligned_cols=112  Identities=13%  Similarity=0.255  Sum_probs=70.8

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcce------ee---eccccc--CCC----CChHHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV------HK---FNSRIH--FPN----ENHVSLYRLQLTNWI  170 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v------~~---~~~~l~--~~~----~~~v~~~~~~l~~~~  170 (247)
                      .|-.++|+||+|+||+++|+.+|+.+.+..+.+ ..++=      .+   +.+.++  .|.    .-.++..++ +.+.+
T Consensus        21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~-~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~-l~~~~   98 (328)
T PRK05707         21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQG-GGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE-LVSFV   98 (328)
T ss_pred             cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH-HHHHH
Confidence            344689999999999999999999998721111 11110      00   001111  111    112232222 22222


Q ss_pred             HHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694         171 ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  226 (247)
Q Consensus       171 ~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~  226 (247)
                      ...-...++.|+||||+|+|+.+.+++|++.|||++       .+++||++|+...
T Consensus        99 ~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp-------~~~~fiL~t~~~~  147 (328)
T PRK05707         99 VQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPS-------GDTVLLLISHQPS  147 (328)
T ss_pred             hhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCC-------CCeEEEEEECChh
Confidence            111123456999999999999999999999999987       7889999987643

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.13  E-value=2.1e-10  Score=106.83  Aligned_cols=147  Identities=16%  Similarity=0.191  Sum_probs=87.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .+.|.+..++.+.+++...+..+.     ....|..++|+||||||||++|+++|+.+.        .+|+.+..+++..
T Consensus       184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--------~~fi~V~~seL~~  255 (438)
T PTZ00361        184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--------ATFLRVVGSELIQ  255 (438)
T ss_pred             HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--------CCEEEEecchhhh
Confidence            478999999999988864332211     123566799999999999999999998743        3677776655432


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC-----------hhhHHHHHhhcccCcccccc-cCCceEEEEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQI-SFQNTIFLFL  221 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~-----------~~~~~~Ll~~Le~~~~~~~~-~~~~~ifI~t  221 (247)
                      .   +++.-...+...+ ........+++||||+|.+.           ..++..++.+|..-   ++. ...+..+|++
T Consensus       256 k---~~Ge~~~~vr~lF-~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~L---dg~~~~~~V~VI~A  328 (438)
T PTZ00361        256 K---YLGDGPKLVRELF-RVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQL---DGFDSRGDVKVIMA  328 (438)
T ss_pred             h---hcchHHHHHHHHH-HHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHH---hhhcccCCeEEEEe
Confidence            1   1111111111222 22223445899999998763           23455555555431   111 1246788999


Q ss_pred             eCCChHHHHHHHHHHHHcCcccc
Q psy1694         222 SNSGGTEIMNTFLELRKSGERYI  244 (247)
Q Consensus       222 SN~g~~~i~~~~~~~~~~g~~Re  244 (247)
                      ||. .+.+...   .++.|++..
T Consensus       329 TNr-~d~LDpa---LlRpGRfd~  347 (438)
T PTZ00361        329 TNR-IESLDPA---LIRPGRIDR  347 (438)
T ss_pred             cCC-hHHhhHH---hccCCeeEE
Confidence            986 3444432   345566543

>CHL00176 ftsH cell division protein; Validated

Probab=99.13  E-value=5.4e-10  Score=108.60  Aligned_cols=144  Identities=16%  Similarity=0.149  Sum_probs=85.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .+.|.+.+++.+.+.+.. +..+.     ....|..++|+||||||||++|+++|....        .||+.++++.+..
T Consensus       184 dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~--------~p~i~is~s~f~~  254 (638)
T CHL00176        184 DIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE--------VPFFSISGSEFVE  254 (638)
T ss_pred             hccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--------CCeeeccHHHHHH
Confidence            388999999888766543 22221     123466799999999999999999988742        3788887765421


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------h---hHHHHHhhcccCcccccccCCceEEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------G---LLDVIIPFIDHHAVYNQISFQNTIFL  219 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~---~~~~Ll~~Le~~~~~~~~~~~~~ifI  219 (247)
                      ...   +.-...+...+. .......++|||||+|.+..           .   .++.|+..++...     .-.+.++|
T Consensus       255 ~~~---g~~~~~vr~lF~-~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~-----~~~~ViVI  325 (638)
T CHL00176        255 MFV---GVGAARVRDLFK-KAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK-----GNKGVIVI  325 (638)
T ss_pred             Hhh---hhhHHHHHHHHH-HHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc-----CCCCeeEE
Confidence            111   100111222222 22334458999999998732           2   3444555554321     12466788


Q ss_pred             EEeCCChHHHHHHHHHHHHcCcccc
Q psy1694         220 FLSNSGGTEIMNTFLELRKSGERYI  244 (247)
Q Consensus       220 ~tSN~g~~~i~~~~~~~~~~g~~Re  244 (247)
                      ++||... .+..   ..++.||+..
T Consensus       326 aaTN~~~-~LD~---ALlRpGRFd~  346 (638)
T CHL00176        326 AATNRVD-ILDA---ALLRPGRFDR  346 (638)
T ss_pred             EecCchH-hhhh---hhhccccCce
Confidence            8888742 3332   3445666654

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=99.11  E-value=6.9e-10  Score=109.17  Aligned_cols=105  Identities=22%  Similarity=0.360  Sum_probs=67.5

Q ss_pred             hcCChHHHHH---HHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694          79 HVHGQELAIS---HICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN  155 (247)
Q Consensus        79 ~l~Gq~~a~~---~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~  155 (247)
                      .++||+..+.   .+.+.+.    ..    +.-.++|+||||||||++|+++++.+-        .+|+.+++...    
T Consensus        29 d~vGQe~ii~~~~~L~~~i~----~~----~~~slLL~GPpGtGKTTLA~aIA~~~~--------~~f~~lna~~~----   88 (725)
T PRK13341         29 EFVGQDHILGEGRLLRRAIK----AD----RVGSLILYGPPGVGKTTLARIIANHTR--------AHFSSLNAVLA----   88 (725)
T ss_pred             HhcCcHHHhhhhHHHHHHHh----cC----CCceEEEECCCCCCHHHHHHHHHHHhc--------Ccceeehhhhh----
Confidence            3889998875   3333333    22    222579999999999999999988742        35666665321    


Q ss_pred             CChHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694         156 ENHVSLYRLQLTNWIISNVTA-CDRAIFIFDEVDKFPKGLLDVIIPFIDHHA  206 (247)
Q Consensus       156 ~~~v~~~~~~l~~~~~~~l~~-~~~~vlilDEiek~~~~~~~~Ll~~Le~~~  206 (247)
                        .+...+..+.. ....+.. ..+.++||||++.++...|+.|++.++++.
T Consensus        89 --~i~dir~~i~~-a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~  137 (725)
T PRK13341         89 --GVKDLRAEVDR-AKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGT  137 (725)
T ss_pred             --hhHHHHHHHHH-HHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCce
Confidence              11112221111 1111222 245799999999999999999999998753

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=99.10  E-value=1.5e-10  Score=104.35  Aligned_cols=146  Identities=14%  Similarity=0.133  Sum_probs=84.2

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccc-cCCCC-----------------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDKGT-----------------  140 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~-~~g~~-----------------  140 (247)
                      .++||+.+++.+.-++-.  ....      .++|.|+||||||++|++++..+-.-. .++..                 
T Consensus         9 ~i~Gq~~~~~~l~~~~~~--~~~~------~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~   80 (334)
T PRK13407          9 AIVGQEEMKQAMVLTAID--PGIG------GVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSS   80 (334)
T ss_pred             HhCCHHHHHHHHHHHHhc--cCCC------cEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccC
Confidence            389999998876643321  1112      479999999999999999999973200 00110                 


Q ss_pred             -------CcceeeecccccCCCCChHHH--HHHHHH-H---HHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcc
Q psy1694         141 -------SRFVHKFNSRIHFPNENHVSL--YRLQLT-N---WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV  207 (247)
Q Consensus       141 -------~~~v~~~~~~l~~~~~~~v~~--~~~~l~-~---~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~  207 (247)
                             .||+.....   ..+...+|.  +...+. +   .-.|.+..+.++++++||++.+++.+|+.|+..|+++..
T Consensus        81 ~~~~~~~~p~~~~p~~---~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v  157 (334)
T PRK13407         81 TTMIERPTPVVDLPLG---VTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGEN  157 (334)
T ss_pred             CcccccCCccccCCCC---CCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCe
Confidence                   111111100   000111111  111110 0   112445567779999999999999999999999999863


Q ss_pred             c---ccc---cCCceEEEEEeCCChHHHHHHHHH
Q psy1694         208 Y---NQI---SFQNTIFLFLSNSGGTEIMNTFLE  235 (247)
Q Consensus       208 ~---~~~---~~~~~ifI~tSN~g~~~i~~~~~~  235 (247)
                      +   ++.   .-.+.++|.|.|-....+...+++
T Consensus       158 ~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld  191 (334)
T PRK13407        158 VVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD  191 (334)
T ss_pred             EEEECCeEEecCCCEEEEecCCcccCCCCHHHHh
Confidence            2   232   113566777777544334444444

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=99.10  E-value=1.2e-10  Score=96.19  Aligned_cols=109  Identities=17%  Similarity=0.280  Sum_probs=65.1

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee--cccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF--NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFD  185 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~--~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilD  185 (247)
                      .+++|+||||||||++|.++++.+..   .|....|+...  +..+.-....  +.+    .. ....+..+  .++|||
T Consensus        48 ~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~~~~L~~~l~~~~~~--~~~----~~-~~~~l~~~--dlLilD  115 (178)
T PF01695_consen   48 ENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFITASDLLDELKQSRSD--GSY----EE-LLKRLKRV--DLLILD  115 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEEHHHHHHHHHCCHCC--TTH----CH-HHHHHHTS--SCEEEE
T ss_pred             eEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEeecCceeccccccccc--cch----hh-hcCccccc--cEeccc
Confidence            37999999999999999999999876   55444343332  1111111000  001    11 22344444  799999


Q ss_pred             CCCCCC--hhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHH
Q psy1694         186 EVDKFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE  235 (247)
Q Consensus       186 Eiek~~--~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~  235 (247)
                      |++..+  +...+.|..+++.+.       .+..+|+|||...+++.+.+.+
T Consensus       116 DlG~~~~~~~~~~~l~~ii~~R~-------~~~~tIiTSN~~~~~l~~~~~d  160 (178)
T PF01695_consen  116 DLGYEPLSEWEAELLFEIIDERY-------ERKPTIITSNLSPSELEEVLGD  160 (178)
T ss_dssp             TCTSS---HHHHHCTHHHHHHHH-------HT-EEEEEESS-HHHHHT----
T ss_pred             ccceeeecccccccchhhhhHhh-------cccCeEeeCCCchhhHhhcccc
Confidence            998765  456777788887743       2346888999999887766553

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=99.10  E-value=3.8e-10  Score=94.75  Aligned_cols=133  Identities=18%  Similarity=0.256  Sum_probs=74.7

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-C-Ccce--------e--e
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-T-SRFV--------H--K  146 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~-~~~v--------~--~  146 (247)
                      .|+||+.+++.+.-+...    ..      ++++.||||||||++|+.++..|-....... . ....        .  .
T Consensus         4 dI~GQe~aKrAL~iAAaG----~h------~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~   73 (206)
T PF01078_consen    4 DIVGQEEAKRALEIAAAG----GH------HLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLI   73 (206)
T ss_dssp             CSSSTHHHHHHHHHHHHC----C--------EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEE
T ss_pred             hhcCcHHHHHHHHHHHcC----CC------CeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCcee
Confidence            489999999877655542    22      6899999999999999999877533100000 0 0000        0  0


Q ss_pred             ecccccCCCCChHHHHHHHHH-H---HHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc-----ccC-Cce
Q psy1694         147 FNSRIHFPNENHVSLYRLQLT-N---WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ-----ISF-QNT  216 (247)
Q Consensus       147 ~~~~l~~~~~~~v~~~~~~l~-~---~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~-----~~~-~~~  216 (247)
                      ...-+-.|+...   ....+. +   ..-+.+..+.++|+|+||+..+++.+++.|+..|+++.++..     +.| .+.
T Consensus        74 ~~~Pfr~phhs~---s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f  150 (206)
T PF01078_consen   74 RQRPFRAPHHSA---SEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARF  150 (206)
T ss_dssp             E---EEEE-TT-----HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--E
T ss_pred             cCCCcccCCCCc---CHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEeccc
Confidence            000000011110   011010 0   012456788899999999999999999999999999875321     121 366


Q ss_pred             EEEEEeCC
Q psy1694         217 IFLFLSNS  224 (247)
Q Consensus       217 ifI~tSN~  224 (247)
                      .+|.|+|-
T Consensus       151 ~lv~a~NP  158 (206)
T PF01078_consen  151 LLVAAMNP  158 (206)
T ss_dssp             EEEEEE-S
T ss_pred             EEEEEecc
Confidence            78888884

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>KOG0744|consensus

Probab=99.09  E-value=5.1e-10  Score=98.90  Aligned_cols=111  Identities=20%  Similarity=0.314  Sum_probs=71.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccC-CCCCcceeeeccccc---CCCCChHHHHHHHHHHHHHHHHHhCCC-eEEE
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKD-KGTSRFVHKFNSRIH---FPNENHVSLYRLQLTNWIISNVTACDR-AIFI  183 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~-g~~~~~v~~~~~~l~---~~~~~~v~~~~~~l~~~~~~~l~~~~~-~vli  183 (247)
                      .+++|||||||||++++++|++|--+... -..+-.+.+++..++   |++.+   .....+-+.+.+.++..+. -.++
T Consensus       179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESg---KlV~kmF~kI~ELv~d~~~lVfvL  255 (423)
T KOG0744|consen  179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESG---KLVAKMFQKIQELVEDRGNLVFVL  255 (423)
T ss_pred             EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhh---hHHHHHHHHHHHHHhCCCcEEEEE
Confidence            58999999999999999999997432111 113456777765553   22222   1233445556555555322 3445


Q ss_pred             EeCCCCCCh---------------hhHHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694         184 FDEVDKFPK---------------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  227 (247)
Q Consensus       184 lDEiek~~~---------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~  227 (247)
                      |||+|.+..               -+.++++.-||.=.     .+.|++++.|||....
T Consensus       256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK-----~~~NvliL~TSNl~~s  309 (423)
T KOG0744|consen  256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK-----RYPNVLILATSNLTDS  309 (423)
T ss_pred             eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEeccchHHH
Confidence            899988732               25778888777622     4689999999997543

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=99.09  E-value=1.8e-09  Score=97.07  Aligned_cols=127  Identities=10%  Similarity=0.163  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee------e---eccccc-
Q psy1694          83 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH------K---FNSRIH-  152 (247)
Q Consensus        83 q~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~------~---~~~~l~-  152 (247)
                      +....+.+.+++.+..       .|-.++|+||+|+||+++|+.+|+.+.+..+.+ ..++=.      +   +.+.++ 
T Consensus         7 ~~~~~~~l~~~~~~~r-------l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-~~~Cg~C~sC~~~~~g~HPD~~~   78 (325)
T PRK06871          7 LQPTYQQITQAFQQGL-------GHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-DQPCGQCHSCHLFQAGNHPDFHI   78 (325)
T ss_pred             hHHHHHHHHHHHHcCC-------cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHhcCCCCCEEE
Confidence            4455555665555321       344689999999999999999999998721111 111100      0   011111 


Q ss_pred             -CCCC-C--hHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         153 -FPNE-N--HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       153 -~~~~-~--~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                       .|.. .  .++.-++ +.+.+...-...++.|+|||++|+|....+|+||+.|||++       .+++||++|+..
T Consensus        79 i~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp-------~~~~fiL~t~~~  147 (325)
T PRK06871         79 LEPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPR-------PNTYFLLQADLS  147 (325)
T ss_pred             EccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCC-------CCeEEEEEECCh
Confidence             1111 1  2222221 22222222223456999999999999999999999999987       889999998754

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=99.08  E-value=8.3e-10  Score=99.76  Aligned_cols=128  Identities=10%  Similarity=0.167  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCC--CCCcc---e---eeecccccC-
Q psy1694          83 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK--GTSRF---V---HKFNSRIHF-  153 (247)
Q Consensus        83 q~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g--~~~~~---v---~~~~~~l~~-  153 (247)
                      +..+.+.+.+.+.+.       +.|-.++|+||+|+||+++|..+|+.+.+..+.+  ..+.+   .   .-+.+.+++ 
T Consensus         7 l~~~~~~l~~~~~~~-------rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i   79 (334)
T PRK07993          7 LRPDYEQLVGSYQAG-------RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL   79 (334)
T ss_pred             ChHHHHHHHHHHHcC-------CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE
Confidence            445555565555531       1344689999999999999999999998721111  11110   0   001111111 


Q ss_pred             -CCCC----hHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         154 -PNEN----HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       154 -~~~~----~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                       |+.+    .+++-++ +.+.+...-...++.|+|||++|+|.....|+||+.|||++       .+++||++|+..
T Consensus        80 ~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------~~t~fiL~t~~~  148 (334)
T PRK07993         80 TPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPP-------ENTWFFLACREP  148 (334)
T ss_pred             ecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCC-------CCeEEEEEECCh
Confidence             2211    1222111 12222112223456999999999999999999999999988       889999998753

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=99.08  E-value=1.1e-09  Score=98.13  Aligned_cols=127  Identities=13%  Similarity=0.186  Sum_probs=79.0

Q ss_pred             ChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCC-c----c---eeeecccccC
Q psy1694          82 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS-R----F---VHKFNSRIHF  153 (247)
Q Consensus        82 Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~-~----~---v~~~~~~l~~  153 (247)
                      .|..+.+.+..++.+.       +-|-.++|+||+|+||+++|..+|+.+++   ..... .    +   ..-+.+.++.
T Consensus         8 W~~~~~~~l~~~~~~~-------rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC---~~~~~~~~c~~c~~~~~g~HPD~~~   77 (319)
T PRK08769          8 WQQRAYDQTVAALDAG-------RLGHGLLICGPEGLGKRAVALALAEHVLA---SGPDPAAAQRTRQLIAAGTHPDLQL   77 (319)
T ss_pred             cHHHHHHHHHHHHHcC-------CcceeEeeECCCCCCHHHHHHHHHHHHhC---CCCCCCCcchHHHHHhcCCCCCEEE
Confidence            3566666666665531       24446899999999999999999999987   32110 0    0   0001111211


Q ss_pred             ----CCCCh----HHHHHHHHHHHHHHHHHh----CCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEE
Q psy1694         154 ----PNENH----VSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFL  221 (247)
Q Consensus       154 ----~~~~~----v~~~~~~l~~~~~~~l~~----~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~t  221 (247)
                          |....    ..-..+++.. +...+..    .++.|+|||++|+|..+.+|+||+.|||++       .+++||++
T Consensus        78 i~~~p~~~~~k~~~~I~idqIR~-l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------~~~~fiL~  149 (319)
T PRK08769         78 VSFIPNRTGDKLRTEIVIEQVRE-ISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPS-------PGRYLWLI  149 (319)
T ss_pred             EecCCCcccccccccccHHHHHH-HHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCC-------CCCeEEEE
Confidence                11110    0001112222 2222222    345899999999999999999999999987       78899999


Q ss_pred             eCCCh
Q psy1694         222 SNSGG  226 (247)
Q Consensus       222 SN~g~  226 (247)
                      |+...
T Consensus       150 ~~~~~  154 (319)
T PRK08769        150 SAQPA  154 (319)
T ss_pred             ECChh
Confidence            88543

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=1.2e-09  Score=103.48  Aligned_cols=144  Identities=17%  Similarity=0.227  Sum_probs=85.4

Q ss_pred             cCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          80 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      +.|-..+.+.+.+++......+.     ....|..+||+||||||||++|+++|..+        ..+|+.+..+++.  
T Consensus       244 iggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~--------~~~fi~v~~~~l~--  313 (494)
T COG0464         244 IGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES--------RSRFISVKGSELL--  313 (494)
T ss_pred             hhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC--------CCeEEEeeCHHHh--
Confidence            45566677777666653222111     13355689999999999999999998863        2588888876552  


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694         155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  223 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN  223 (247)
                       ..++++....+...+.. -.....+++||||+|++-+           .+.+.++..++.-.     +..++.+|.+||
T Consensus       314 -sk~vGesek~ir~~F~~-A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e-----~~~~v~vi~aTN  386 (494)
T COG0464         314 -SKWVGESEKNIRELFEK-ARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE-----KAEGVLVIAATN  386 (494)
T ss_pred             -ccccchHHHHHHHHHHH-HHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC-----ccCceEEEecCC
Confidence             22233223233333322 2233469999999998843           35666666665322     224566677777


Q ss_pred             CChHHHHHHHHHHHHcCcccc
Q psy1694         224 SGGTEIMNTFLELRKSGERYI  244 (247)
Q Consensus       224 ~g~~~i~~~~~~~~~~g~~Re  244 (247)
                      ... .|..   .+++.||+++
T Consensus       387 ~p~-~ld~---a~lR~gRfd~  403 (494)
T COG0464         387 RPD-DLDP---ALLRPGRFDR  403 (494)
T ss_pred             Ccc-ccCH---hhcccCccce
Confidence            642 2332   3344466654

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.07  E-value=1.3e-09  Score=108.04  Aligned_cols=129  Identities=16%  Similarity=0.169  Sum_probs=82.9

Q ss_pred             cCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          80 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      +.|.+.+++.+.+.+......+.     ....|..++|+||||||||++|+++|+.+.        .+|+.++++++...
T Consensus       180 i~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--------~~~i~i~~~~i~~~  251 (733)
T TIGR01243       180 IGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--------AYFISINGPEIMSK  251 (733)
T ss_pred             hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC--------CeEEEEecHHHhcc
Confidence            88999999999888764322211     123455789999999999999999998853        36788776655322


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694         155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  223 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN  223 (247)
                      ..   +.....+...+. .......+++||||+|.+.+           .+++.|+..|+.-.     +-.+.++|.++|
T Consensus       252 ~~---g~~~~~l~~lf~-~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~-----~~~~vivI~atn  322 (733)
T TIGR01243       252 YY---GESEERLREIFK-EAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLK-----GRGRVIVIGATN  322 (733)
T ss_pred             cc---cHHHHHHHHHHH-HHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccc-----cCCCEEEEeecC
Confidence            11   212222233332 22334458999999988742           36778888887532     124567777887


Q ss_pred             CC
Q psy1694         224 SG  225 (247)
Q Consensus       224 ~g  225 (247)
                      ..
T Consensus       323 ~~  324 (733)
T TIGR01243       323 RP  324 (733)
T ss_pred             Ch
Confidence            64

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=99.05  E-value=2.3e-09  Score=95.82  Aligned_cols=106  Identities=17%  Similarity=0.220  Sum_probs=67.5

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHH----HHHHHHHHhCCCeEEE
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT----NWIISNVTACDRAIFI  183 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~----~~~~~~l~~~~~~vli  183 (247)
                      .+++|+||+|||||++|.++|+.+..   .|....|+++.  ++       +..++....    ......+..  ..+||
T Consensus       157 ~gl~L~G~~G~GKThLa~Aia~~l~~---~g~~v~~~~~~--~l-------~~~lk~~~~~~~~~~~l~~l~~--~dlLi  222 (306)
T PRK08939        157 KGLYLYGDFGVGKSYLLAAIANELAK---KGVSSTLLHFP--EF-------IRELKNSISDGSVKEKIDAVKE--APVLM  222 (306)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEEEHH--HH-------HHHHHHHHhcCcHHHHHHHhcC--CCEEE
Confidence            46899999999999999999999876   55544444432  21       111111110    111122333  47999


Q ss_pred             EeCCCCCC--hhhHHHHHh-hcccCcccccccCCceEEEEEeCCChHHHHHHH
Q psy1694         184 FDEVDKFP--KGLLDVIIP-FIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF  233 (247)
Q Consensus       184 lDEiek~~--~~~~~~Ll~-~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~  233 (247)
                      |||++..+  +...+.++. +++.+-      ..+..+|+|||...+++.+.+
T Consensus       223 IDDiG~e~~s~~~~~~ll~~Il~~R~------~~~~~ti~TSNl~~~el~~~~  269 (306)
T PRK08939        223 LDDIGAEQMSSWVRDEVLGVILQYRM------QEELPTFFTSNFDFDELEHHL  269 (306)
T ss_pred             EecCCCccccHHHHHHHHHHHHHHHH------HCCCeEEEECCCCHHHHHHHH
Confidence            99997654  455544544 446531      145689999999999988765

>KOG0731|consensus

Probab=99.04  E-value=8.7e-10  Score=107.28  Aligned_cols=141  Identities=20%  Similarity=0.220  Sum_probs=91.9

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .+-|.+.|.+.|.+.+. ++.+|.     ..+-|..++|+||||||||++|+++|-..        .-||+.+.-+++  
T Consensus       312 DVAG~deAK~El~E~V~-fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA--------gVPF~svSGSEF--  380 (774)
T KOG0731|consen  312 DVAGVDEAKEELMEFVK-FLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSVSGSEF--  380 (774)
T ss_pred             cccCcHHHHHHHHHHHH-HhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc--------CCceeeechHHH--
Confidence            48999999998877664 333332     13457789999999999999999997761        358888876664  


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHh---CCCeEEEEeCCCCCCh---------------hhHHHHHhhcccCcccccccCCc
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTA---CDRAIFIFDEVDKFPK---------------GLLDVIIPFIDHHAVYNQISFQN  215 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~---~~~~vlilDEiek~~~---------------~~~~~Ll~~Le~~~~~~~~~~~~  215 (247)
                           +..+.+.-..++...+..   ...+++|+||+|....               ..++.|+.-||....    . ..
T Consensus       381 -----vE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~----~-~~  450 (774)
T KOG0731|consen  381 -----VEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET----S-KG  450 (774)
T ss_pred             -----HHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC----C-Cc
Confidence                 222222112334444443   3348999999976532               357777777776431    1 56


Q ss_pred             eEEEEEeCCChHHHHHHHHHHHHcCcccc
Q psy1694         216 TIFLFLSNSGGTEIMNTFLELRKSGERYI  244 (247)
Q Consensus       216 ~ifI~tSN~g~~~i~~~~~~~~~~g~~Re  244 (247)
                      +||+.+||...- +-   .++++-||+.-
T Consensus       451 vi~~a~tnr~d~-ld---~allrpGRfdr  475 (774)
T KOG0731|consen  451 VIVLAATNRPDI-LD---PALLRPGRFDR  475 (774)
T ss_pred             EEEEeccCCccc-cC---HHhcCCCcccc
Confidence            788888887432 21   34566666643

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.04  E-value=1e-09  Score=108.60  Aligned_cols=124  Identities=14%  Similarity=0.121  Sum_probs=82.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~  153 (247)
                      .++||+..++.+.+.+.+..        +.+++|+||||||||++++.+|+.+..   ...     ...++.++++.+..
T Consensus       183 ~~igr~~ei~~~~~~L~~~~--------~~n~lL~G~pG~GKT~l~~~la~~~~~---~~~p~~l~~~~~~~~~~~~l~a  251 (731)
T TIGR02639       183 PLIGREDELERTIQVLCRRK--------KNNPLLVGEPGVGKTAIAEGLALRIAE---GKVPENLKNAKIYSLDMGSLLA  251 (731)
T ss_pred             cccCcHHHHHHHHHHHhcCC--------CCceEEECCCCCCHHHHHHHHHHHHHh---CCCchhhcCCeEEEecHHHHhh
Confidence            58999999988777665431        115689999999999999999998754   221     23455555544421


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC---------hhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP---------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~---------~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                       ...+.++++..+++.+.. +......++||||++.+.         .++++.|++.|+.+         +..+|.+||.
T Consensus       252 -~~~~~g~~e~~l~~i~~~-~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g---------~i~~IgaTt~  320 (731)
T TIGR02639       252 -GTKYRGDFEERLKAVVSE-IEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG---------KLRCIGSTTY  320 (731)
T ss_pred             -hccccchHHHHHHHHHHH-HhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC---------CeEEEEecCH
Confidence             122334455555554432 233456899999999774         34688999999875         3467777764

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.04  E-value=3.3e-09  Score=97.42  Aligned_cols=132  Identities=14%  Similarity=0.125  Sum_probs=82.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC-----
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF-----  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~-----  153 (247)
                      .++|.+..++.+...+.....+.    .|..++++||||||||++++.+++.+..   .+..-.++.++|.....     
T Consensus        31 ~l~~Re~e~~~l~~~l~~~~~~~----~~~~~lI~G~~GtGKT~l~~~v~~~l~~---~~~~~~~v~in~~~~~~~~~~~  103 (394)
T PRK00411         31 NLPHREEQIEELAFALRPALRGS----RPLNVLIYGPPGTGKTTTVKKVFEELEE---IAVKVVYVYINCQIDRTRYAIF  103 (394)
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCC----CCCeEEEECCCCCCHHHHHHHHHHHHHH---hcCCcEEEEEECCcCCCHHHHH
Confidence            58899999999988887765422    3446899999999999999999998654   33234567777643211     


Q ss_pred             ----------CCCChHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCCC----hhhHHHHHhhcccCcccccccCCceEE
Q psy1694         154 ----------PNENHVSLYRLQLTNWIISNVTAC-DRAIFIFDEVDKFP----KGLLDVIIPFIDHHAVYNQISFQNTIF  218 (247)
Q Consensus       154 ----------~~~~~v~~~~~~l~~~~~~~l~~~-~~~vlilDEiek~~----~~~~~~Ll~~Le~~~~~~~~~~~~~if  218 (247)
                                +.+.....+.+ +...+...+... ...+|+|||+|.+.    .+.+..|++.++...      -.+..+
T Consensus       104 ~~i~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~------~~~v~v  176 (394)
T PRK00411        104 SEIARQLFGHPPPSSGLSFDE-LFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYP------GARIGV  176 (394)
T ss_pred             HHHHHHhcCCCCCCCCCCHHH-HHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccC------CCeEEE
Confidence                      00100001111 222333344433 34688999999986    456666666655421      136678


Q ss_pred             EEEeCC
Q psy1694         219 LFLSNS  224 (247)
Q Consensus       219 I~tSN~  224 (247)
                      |+++|.
T Consensus       177 I~i~~~  182 (394)
T PRK00411        177 IGISSD  182 (394)
T ss_pred             EEEECC
Confidence            888775

>smart00763 AAA_PrkA PrkA AAA domain

Probab=99.03  E-value=3.7e-09  Score=95.66  Aligned_cols=51  Identities=22%  Similarity=0.275  Sum_probs=42.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .++|++.+++.+++.++....+..  .+...++|+||||+|||++|++|++.+
T Consensus        52 ~~~G~~~~i~~lv~~l~~~a~g~~--~~r~il~L~GPPGsGKStla~~La~~l  102 (361)
T smart00763       52 DFFGMEEAIERFVNYFKSAAQGLE--ERKQILYLLGPVGGGKSSLVECLKRGL  102 (361)
T ss_pred             hccCcHHHHHHHHHHHHHHHhcCC--CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            699999999999999988765322  233468999999999999999999986

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK07952 DNA replication protein DnaC; Validated

Probab=99.03  E-value=3.4e-09  Score=91.71  Aligned_cols=109  Identities=16%  Similarity=0.205  Sum_probs=67.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHH--HHHHHHHHHHHhCCCeEEEEeC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRL--QLTNWIISNVTACDRAIFIFDE  186 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~--~l~~~~~~~l~~~~~~vlilDE  186 (247)
                      .++|+|+||||||++|.+|++++..   .+.  ..+.+..+++...   ....|..  .....+...+.  ..++|+|||
T Consensus       101 ~~~l~G~~GtGKThLa~aia~~l~~---~g~--~v~~it~~~l~~~---l~~~~~~~~~~~~~~l~~l~--~~dlLvIDD  170 (244)
T PRK07952        101 SFIFSGKPGTGKNHLAAAICNELLL---RGK--SVLIITVADIMSA---MKDTFSNSETSEEQLLNDLS--NVDLLVIDE  170 (244)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHh---cCC--eEEEEEHHHHHHH---HHHHHhhccccHHHHHHHhc--cCCEEEEeC
Confidence            6899999999999999999999865   442  2233333332100   0001100  00112223333  357999999


Q ss_pred             CCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHH
Q psy1694         187 VDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF  233 (247)
Q Consensus       187 iek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~  233 (247)
                      ++..+.  ...+.|..+++.+.      -++..+|+|||...+++.+.+
T Consensus       171 ig~~~~s~~~~~~l~~Ii~~Ry------~~~~~tiitSNl~~~~l~~~~  213 (244)
T PRK07952        171 IGVQTESRYEKVIINQIVDRRS------SSKRPTGMLTNSNMEEMTKLL  213 (244)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHH------hCCCCEEEeCCCCHHHHHHHh
Confidence            988754  34557777887642      135679999999999877554

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=99.03  E-value=3.9e-10  Score=109.91  Aligned_cols=147  Identities=14%  Similarity=0.110  Sum_probs=87.9

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc----------ccc------------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK----------RYK------------  136 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~----------~~~------------  136 (247)
                      .|+||+.++..+.-.+.    ++.   . -.++|.|++|||||++|+.|++.+-.          ...            
T Consensus         5 ~ivGq~~~~~al~~~av----~~~---~-g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~   76 (633)
T TIGR02442         5 AIVGQEDLKLALLLNAV----DPR---I-GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRR   76 (633)
T ss_pred             hhcChHHHHHHHHHHhh----CCC---C-CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhh
Confidence            48999988865543332    211   1 14899999999999999999988620          000            


Q ss_pred             -----CCCCCcceeeecccccCCCCChHHH--HHHHHH-H---HHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694         137 -----DKGTSRFVHKFNSRIHFPNENHVSL--YRLQLT-N---WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHH  205 (247)
Q Consensus       137 -----~g~~~~~v~~~~~~l~~~~~~~v~~--~~~~l~-~---~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~  205 (247)
                           .....||+.+.++..   ....++.  +...+. +   .-.+.+..+.++++||||++++++.+|+.|+.+|+++
T Consensus        77 ~~~~~~~~~~pfv~~p~~~t---~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g  153 (633)
T TIGR02442        77 KYRPSEQRPVPFVNLPLGAT---EDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMG  153 (633)
T ss_pred             cccccccCCCCeeeCCCCCc---HHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcC
Confidence                 001245666544321   0001110  111110 0   1124556778899999999999999999999999988


Q ss_pred             ccc---ccc---cCCceEEEEEeCCChHHHHHHHHHH
Q psy1694         206 AVY---NQI---SFQNTIFLFLSNSGGTEIMNTFLEL  236 (247)
Q Consensus       206 ~~~---~~~---~~~~~ifI~tSN~g~~~i~~~~~~~  236 (247)
                      .+.   .+.   --.+.++|.|+|.....+...+++.
T Consensus       154 ~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR  190 (633)
T TIGR02442       154 VNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDR  190 (633)
T ss_pred             CEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhh
Confidence            532   221   1146778888886433444444443

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>PRK08181 transposase; Validated

Probab=99.02  E-value=1.1e-09  Score=96.19  Aligned_cols=104  Identities=17%  Similarity=0.235  Sum_probs=67.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHH----HHHHHHHHHhCCCeEEEE
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQL----TNWIISNVTACDRAIFIF  184 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l----~~~~~~~l~~~~~~vlil  184 (247)
                      +++|+||||||||++|.++++.+..   .|...  +.+...++       +..++...    .......+..  ..++||
T Consensus       108 nlll~Gp~GtGKTHLa~Aia~~a~~---~g~~v--~f~~~~~L-------~~~l~~a~~~~~~~~~l~~l~~--~dLLII  173 (269)
T PRK08181        108 NLLLFGPPGGGKSHLAAAIGLALIE---NGWRV--LFTRTTDL-------VQKLQVARRELQLESAIAKLDK--FDLLIL  173 (269)
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHH---cCCce--eeeeHHHH-------HHHHHHHHhCCcHHHHHHHHhc--CCEEEE
Confidence            6899999999999999999998765   44322  22222222       11111100    0111122333  479999


Q ss_pred             eCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHH
Q psy1694         185 DEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF  233 (247)
Q Consensus       185 DEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~  233 (247)
                      ||++..+.  ..+..|..+++.+.       .+..+|+|||.+.++..+.+
T Consensus       174 DDlg~~~~~~~~~~~Lf~lin~R~-------~~~s~IiTSN~~~~~w~~~~  217 (269)
T PRK08181        174 DDLAYVTKDQAETSVLFELISARY-------ERRSILITANQPFGEWNRVF  217 (269)
T ss_pred             eccccccCCHHHHHHHHHHHHHHH-------hCCCEEEEcCCCHHHHHHhc
Confidence            99998865  45677888888642       33468999999998877653

>KOG0727|consensus

Probab=99.02  E-value=2.1e-09  Score=92.40  Aligned_cols=127  Identities=17%  Similarity=0.288  Sum_probs=81.5

Q ss_pred             cCChHHHHHHHHHHHHHhhh-----cccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          80 VHGQELAISHICGALKNHFQ-----NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~-----~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      +-|-+...+.+++++.--+.     ....-+-|..++++||||||||++|+++|+|.-        ..|+++.-+++   
T Consensus       157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~--------a~firvvgsef---  225 (408)
T KOG0727|consen  157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT--------AAFIRVVGSEF---  225 (408)
T ss_pred             cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc--------hheeeeccHHH---
Confidence            56677777888888763111     111134566789999999999999999999843        36888876554   


Q ss_pred             CCChHHHHHH----HHHHHHHHHHHhCCCeEEEEeCCCCC-----------ChhhHHHHHhhcccCcccccc-cCCceEE
Q psy1694         155 NENHVSLYRL----QLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQI-SFQNTIF  218 (247)
Q Consensus       155 ~~~~v~~~~~----~l~~~~~~~l~~~~~~vlilDEiek~-----------~~~~~~~Ll~~Le~~~~~~~~-~~~~~if  218 (247)
                          +..|-+    ...+.+ ..-+....+++|+||+|.+           +.++|..|+.+|..-   ++. ...|+-+
T Consensus       226 ----vqkylgegprmvrdvf-rlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqm---dgfdq~~nvkv  297 (408)
T KOG0727|consen  226 ----VQKYLGEGPRMVRDVF-RLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQM---DGFDQTTNVKV  297 (408)
T ss_pred             ----HHHHhccCcHHHHHHH-HHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhc---cCcCcccceEE
Confidence                223322    111222 2233445599999999876           336788888777542   222 2346778


Q ss_pred             EEEeCCC
Q psy1694         219 LFLSNSG  225 (247)
Q Consensus       219 I~tSN~g  225 (247)
                      |+.+|..
T Consensus       298 imatnra  304 (408)
T KOG0727|consen  298 IMATNRA  304 (408)
T ss_pred             EEecCcc
Confidence            9998874

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=99.01  E-value=8.1e-10  Score=99.81  Aligned_cols=149  Identities=15%  Similarity=0.161  Sum_probs=82.7

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhcc-------ccCCCCCcc-eeeeccc
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKR-------YKDKGTSRF-VHKFNSR  150 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~-------~~~g~~~~~-v~~~~~~  150 (247)
                      .++||+.++..+.-.+-.  ....      .+++.|++|+|||+++++++..+-..       .+.....|+ ...+|..
T Consensus         5 ~ivgq~~~~~al~~~~~~--~~~g------~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   76 (337)
T TIGR02030         5 AIVGQDEMKLALLLNVID--PKIG------GVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRI   76 (337)
T ss_pred             ccccHHHHHHHHHHHhcC--CCCC------eEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhh
Confidence            489999998776543321  1111      57899999999999999999885210       000001111 0001110


Q ss_pred             -----------------ccCCC----CChHHH--HHHHHHH----HHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcc
Q psy1694         151 -----------------IHFPN----ENHVSL--YRLQLTN----WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFID  203 (247)
Q Consensus       151 -----------------l~~~~----~~~v~~--~~~~l~~----~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le  203 (247)
                                       .+.|.    ...++.  +...+..    .-.+.+.++.++++++||++.+++.+|++|+.+|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~  156 (337)
T TIGR02030        77 RVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAA  156 (337)
T ss_pred             hhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHH
Confidence                             01011    011111  1111100    11245566778999999999999999999999999


Q ss_pred             cCccc---ccc---cCCceEEEEEeCCChHHHHHHHHH
Q psy1694         204 HHAVY---NQI---SFQNTIFLFLSNSGGTEIMNTFLE  235 (247)
Q Consensus       204 ~~~~~---~~~---~~~~~ifI~tSN~g~~~i~~~~~~  235 (247)
                      ++..+   .+.   --.+.++|.|.|.....+...+++
T Consensus       157 ~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld  194 (337)
T TIGR02030       157 SGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD  194 (337)
T ss_pred             hCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh
Confidence            87521   221   113567777777543334444443

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=99.00  E-value=2.1e-09  Score=93.61  Aligned_cols=108  Identities=19%  Similarity=0.250  Sum_probs=68.3

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHH-----HHHHHHHHHHhCCCe
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQ-----LTNWIISNVTACDRA  180 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~-----l~~~~~~~l~~~~~~  180 (247)
                      ++.+++|+||||||||++|.+|++.+..   .|.+.-|+..  +++       +...+..     ....+...  -+...
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~---~g~sv~f~~~--~el-------~~~Lk~~~~~~~~~~~l~~~--l~~~d  169 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLK---AGISVLFITA--PDL-------LSKLKAAFDEGRLEEKLLRE--LKKVD  169 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEEH--HHH-------HHHHHHHHhcCchHHHHHHH--hhcCC
Confidence            3347899999999999999999999875   5544333333  222       2212221     12222222  24458


Q ss_pred             EEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHH
Q psy1694         181 IFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFL  234 (247)
Q Consensus       181 vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~  234 (247)
                      ++||||++..|.  ...+.+.+++..+..      ++.. |+|||...++..+.+-
T Consensus       170 lLIiDDlG~~~~~~~~~~~~~q~I~~r~~------~~~~-~~tsN~~~~~~~~~~~  218 (254)
T COG1484         170 LLIIDDIGYEPFSQEEADLLFQLISRRYE------SRSL-IITSNLSFGEWDELFG  218 (254)
T ss_pred             EEEEecccCccCCHHHHHHHHHHHHHHHh------hccc-eeecCCChHHHHhhcc
Confidence            999999998765  356666666665321      3334 9999998887766543

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=99.00  E-value=2.9e-09  Score=90.25  Aligned_cols=97  Identities=8%  Similarity=0.103  Sum_probs=64.6

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDE  186 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDE  186 (247)
                      +..++|+||+|||||++|+.+++....   .+  .+++.++|..+..           .....+ ..+..  .++++|||
T Consensus        38 ~~~lll~G~~G~GKT~la~~~~~~~~~---~~--~~~~~i~~~~~~~-----------~~~~~~-~~~~~--~~lLvIDd   98 (226)
T TIGR03420        38 DRFLYLWGESGSGKSHLLQAACAAAEE---RG--KSAIYLPLAELAQ-----------ADPEVL-EGLEQ--ADLVCLDD   98 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHh---cC--CcEEEEeHHHHHH-----------hHHHHH-hhccc--CCEEEEeC
Confidence            336899999999999999999988654   32  3567777665421           001111 22222  36999999


Q ss_pred             CCCCChhh--HHHHHhhcccCcccccccCCceEEEEEeCCChHH
Q psy1694         187 VDKFPKGL--LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE  228 (247)
Q Consensus       187 iek~~~~~--~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~  228 (247)
                      ++.++...  +..|..+++...     + .+..+|+|||...+.
T Consensus        99 i~~l~~~~~~~~~L~~~l~~~~-----~-~~~~iIits~~~~~~  136 (226)
T TIGR03420        99 VEAIAGQPEWQEALFHLYNRVR-----E-AGGRLLIAGRAAPAQ  136 (226)
T ss_pred             hhhhcCChHHHHHHHHHHHHHH-----H-cCCeEEEECCCChHH
Confidence            99998744  888888876522     0 223678888876644

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.99  E-value=2.5e-09  Score=107.25  Aligned_cols=125  Identities=15%  Similarity=0.136  Sum_probs=81.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~  153 (247)
                      .++||+..++.+.+.+.+..  .+      +++|+||||||||++++.+|+.+..   ...     ...++..+++.+. 
T Consensus       188 ~~iGr~~ei~~~i~~l~r~~--~~------n~lLvG~pGvGKTal~~~La~~i~~---~~v~~~l~~~~i~~l~l~~l~-  255 (852)
T TIGR03345       188 PVLGRDDEIRQMIDILLRRR--QN------NPILTGEAGVGKTAVVEGLALRIAA---GDVPPALRNVRLLSLDLGLLQ-  255 (852)
T ss_pred             cccCCHHHHHHHHHHHhcCC--cC------ceeEECCCCCCHHHHHHHHHHHHhh---CCCCccccCCeEEEeehhhhh-
Confidence            58999998887777665421  11      4589999999999999999998654   211     1234444444432 


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----h---hHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----G---LLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----~---~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      ....+.+.+...++..+...-......|+||||++.+..     +   .-+.|++.|+.+.         ..+|.+||.
T Consensus       256 ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~---------l~~IgaTT~  325 (852)
T TIGR03345       256 AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGE---------LRTIAATTW  325 (852)
T ss_pred             cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCC---------eEEEEecCH
Confidence            112334556666666664433334568999999999853     2   3347999998864         356666654

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK06526 transposase; Provisional

Probab=98.99  E-value=2.4e-09  Score=93.20  Aligned_cols=105  Identities=14%  Similarity=0.167  Sum_probs=65.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHH-HHHHHHHHHH-hCCCeEEEEeC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQ-LTNWIISNVT-ACDRAIFIFDE  186 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~-l~~~~~~~l~-~~~~~vlilDE  186 (247)
                      +++|+||||||||++|.+|+..+..   .|...-|+.  ++++       +...... ..+.....+. -....++||||
T Consensus       100 nlll~Gp~GtGKThLa~al~~~a~~---~g~~v~f~t--~~~l-------~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD  167 (254)
T PRK06526        100 NVVFLGPPGTGKTHLAIGLGIRACQ---AGHRVLFAT--AAQW-------VARLAAAHHAGRLQAELVKLGRYPLLIVDE  167 (254)
T ss_pred             eEEEEeCCCCchHHHHHHHHHHHHH---CCCchhhhh--HHHH-------HHHHHHHHhcCcHHHHHHHhccCCEEEEcc
Confidence            7899999999999999999998765   443322221  1111       1111000 0001111111 23458999999


Q ss_pred             CCCCC--hhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694         187 VDKFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT  232 (247)
Q Consensus       187 iek~~--~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~  232 (247)
                      ++..+  +..++.|..+++...       .+..+|+|||...+...+.
T Consensus       168 ~g~~~~~~~~~~~L~~li~~r~-------~~~s~IitSn~~~~~w~~~  208 (254)
T PRK06526        168 VGYIPFEPEAANLFFQLVSSRY-------ERASLIVTSNKPFGRWGEV  208 (254)
T ss_pred             cccCCCCHHHHHHHHHHHHHHH-------hcCCEEEEcCCCHHHHHHH
Confidence            99886  566778888887632       3446899999988876554

>KOG0729|consensus

Probab=98.99  E-value=4e-09  Score=91.30  Aligned_cols=129  Identities=18%  Similarity=0.254  Sum_probs=84.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .+-|-...++.+++.+..-+.++.     .-+-|..++++||||||||++||++|+.        .+..|+++.-|++  
T Consensus       178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr--------tdacfirvigsel--  247 (435)
T KOG0729|consen  178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR--------TDACFIRVIGSEL--  247 (435)
T ss_pred             cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc--------cCceEEeehhHHH--
Confidence            367788888888888864322221     0234557899999999999999999765        2457888876665  


Q ss_pred             CCCChHHHHHHHHHHHHHHHH---HhCCCeEEEEeCCCCCC-----------hhhHHHHHhhcccCcccccccCC-ceEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNV---TACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQISFQ-NTIF  218 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l---~~~~~~vlilDEiek~~-----------~~~~~~Ll~~Le~~~~~~~~~~~-~~if  218 (247)
                           ++.|.+.=..-+++.+   +....+++||||||.+.           .++|..++.++..   .++.|-| |.-+
T Consensus       248 -----vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~q---ldgfdprgnikv  319 (435)
T KOG0729|consen  248 -----VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQ---LDGFDPRGNIKV  319 (435)
T ss_pred             -----HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHh---ccCCCCCCCeEE
Confidence                 4445442222233333   33445999999998762           3678888887653   3344433 5556


Q ss_pred             EEEeCCC
Q psy1694         219 LFLSNSG  225 (247)
Q Consensus       219 I~tSN~g  225 (247)
                      ++.+|..
T Consensus       320 lmatnrp  326 (435)
T KOG0729|consen  320 LMATNRP  326 (435)
T ss_pred             EeecCCC
Confidence            7777764

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=98.99  E-value=7.3e-09  Score=92.92  Aligned_cols=129  Identities=12%  Similarity=0.167  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccC-CCCCcc---eee---eccccc--C
Q psy1694          83 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-KGTSRF---VHK---FNSRIH--F  153 (247)
Q Consensus        83 q~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~-g~~~~~---v~~---~~~~l~--~  153 (247)
                      +.+..+.+.+++.+.       +-|-.++|+||.|+||+.+|+.+|+.+.+.... +..+.+   ..+   +.+.++  .
T Consensus         8 l~~~~~~l~~~~~~~-------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~   80 (319)
T PRK06090          8 LVPVWQNWKAGLDAG-------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIK   80 (319)
T ss_pred             HHHHHHHHHHHHHcC-------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe
Confidence            445555565555431       134468999999999999999999999873111 000000   000   011111  1


Q ss_pred             CCC--C--hHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694         154 PNE--N--HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  226 (247)
Q Consensus       154 ~~~--~--~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~  226 (247)
                      |..  .  .+++.++ +.+.+...-...++.|+|||++|+|+...+|+|++.|||++       .+++||++|+...
T Consensus        81 p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------~~t~fiL~t~~~~  149 (319)
T PRK06090         81 PEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPA-------PNCLFLLVTHNQK  149 (319)
T ss_pred             cCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCC-------CCeEEEEEECChh
Confidence            111  1  1222111 11122111223456999999999999999999999999987       7899999987643

>PRK06835 DNA replication protein DnaC; Validated

Probab=98.98  E-value=7.6e-09  Score=93.27  Aligned_cols=109  Identities=13%  Similarity=0.230  Sum_probs=67.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh-HHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH-VSLYRLQLTNWIISNVTACDRAIFIFDEV  187 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~-v~~~~~~l~~~~~~~l~~~~~~vlilDEi  187 (247)
                      +++|+||||||||++|.++|+.+..   .|.  ..+.+...++....... ... ....... ...+..|  .+|||||+
T Consensus       185 ~Lll~G~~GtGKThLa~aIa~~l~~---~g~--~V~y~t~~~l~~~l~~~~~~~-~~~~~~~-~~~l~~~--DLLIIDDl  255 (329)
T PRK06835        185 NLLFYGNTGTGKTFLSNCIAKELLD---RGK--SVIYRTADELIEILREIRFNN-DKELEEV-YDLLINC--DLLIIDDL  255 (329)
T ss_pred             cEEEECCCCCcHHHHHHHHHHHHHH---CCC--eEEEEEHHHHHHHHHHHHhcc-chhHHHH-HHHhccC--CEEEEecc
Confidence            6899999999999999999999876   443  22333333321100000 000 0000111 1333444  79999999


Q ss_pred             CCC--ChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694         188 DKF--PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT  232 (247)
Q Consensus       188 ek~--~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~  232 (247)
                      +..  .+..+..|..+++++..      ++..+|+|||.+++++.+.
T Consensus       256 G~e~~t~~~~~~Lf~iin~R~~------~~k~tIiTSNl~~~el~~~  296 (329)
T PRK06835        256 GTEKITEFSKSELFNLINKRLL------RQKKMIISTNLSLEELLKT  296 (329)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHH------CCCCEEEECCCCHHHHHHH
Confidence            665  56778888888887431      2346899999999988654

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=98.98  E-value=5.3e-09  Score=95.03  Aligned_cols=138  Identities=14%  Similarity=0.151  Sum_probs=79.7

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhcccc-CCCCCcceeeecccccCCCCC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-DKGTSRFVHKFNSRIHFPNEN  157 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~-~g~~~~~v~~~~~~l~~~~~~  157 (247)
                      .+.|++..++.+...+.....+.    +|..++++||||||||++++.+.+.+..... .+..-++++++|.....+.. 
T Consensus        16 ~l~gRe~e~~~l~~~l~~~~~~~----~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~-   90 (365)
T TIGR02928        16 RIVHRDEQIEELAKALRPILRGS----RPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ-   90 (365)
T ss_pred             CCCCcHHHHHHHHHHHHHHHcCC----CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH-
Confidence            48999999999999888765432    4446899999999999999999988643100 11113566777644321100 


Q ss_pred             hHHHHH-----------------HHHHHHHHHHHHh-CCCeEEEEeCCCCCCh---hhHHHHHhhcccCcccccccCCce
Q psy1694         158 HVSLYR-----------------LQLTNWIISNVTA-CDRAIFIFDEVDKFPK---GLLDVIIPFIDHHAVYNQISFQNT  216 (247)
Q Consensus       158 ~v~~~~-----------------~~l~~~~~~~l~~-~~~~vlilDEiek~~~---~~~~~Ll~~Le~~~~~~~~~~~~~  216 (247)
                      .....-                 ..+...+.+.+.. ....+|+|||+|.+..   +++..|.+..+..    .....+.
T Consensus        91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~----~~~~~~v  166 (365)
T TIGR02928        91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNG----DLDNAKV  166 (365)
T ss_pred             HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhcccccc----CCCCCeE
Confidence            000000                 0111222233333 3346899999999942   3344444442211    1122567


Q ss_pred             EEEEEeCCC
Q psy1694         217 IFLFLSNSG  225 (247)
Q Consensus       217 ifI~tSN~g  225 (247)
                      ++|+++|..
T Consensus       167 ~lI~i~n~~  175 (365)
T TIGR02928       167 GVIGISNDL  175 (365)
T ss_pred             EEEEEECCc
Confidence            888888764

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.97  E-value=2.8e-09  Score=107.02  Aligned_cols=126  Identities=13%  Similarity=0.136  Sum_probs=80.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~  153 (247)
                      .++|++..++.+.+.+.+..  .+      +++|+||||||||++|+.+|..+..   ...     ..+++.++++.+..
T Consensus       179 ~vigr~~ei~~~i~iL~r~~--~~------n~lL~G~pGvGKT~l~~~la~~i~~---~~vp~~l~~~~~~~l~l~~l~a  247 (857)
T PRK10865        179 PVIGRDEEIRRTIQVLQRRT--KN------NPVLIGEPGVGKTAIVEGLAQRIIN---GEVPEGLKGRRVLALDMGALVA  247 (857)
T ss_pred             cCCCCHHHHHHHHHHHhcCC--cC------ceEEECCCCCCHHHHHHHHHHHhhc---CCCchhhCCCEEEEEehhhhhh
Confidence            49999998888887776532  22      4588999999999999999998653   111     23444554444321


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------hhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                       ...+.+.+.+.++..+...-......++||||++.+..        +.++.|++.|..+.         ..+|.+||..
T Consensus       248 -g~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~---------l~~IgaTt~~  317 (857)
T PRK10865        248 -GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGE---------LHCVGATTLD  317 (857)
T ss_pred             -ccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCC---------CeEEEcCCCH
Confidence             12223334444444443222223457999999998853        36899999998864         3555555543

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=98.97  E-value=6.5e-09  Score=91.84  Aligned_cols=111  Identities=17%  Similarity=0.225  Sum_probs=71.2

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee---eccccc--CCCCC----hHHHHHHHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK---FNSRIH--FPNEN----HVSLYRLQLTNWIISNVTA  176 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~---~~~~l~--~~~~~----~v~~~~~~l~~~~~~~l~~  176 (247)
                      -|-.++|+||.|+||+.+|..+|+.+++   ......+..+   ..+.++  .|...    .+++-+ .+...+...-..
T Consensus        18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC---~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR-~l~~~~~~~p~e   93 (290)
T PRK05917         18 VPSAIILHGQDLSNLSARAYELASLILK---ETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPR-AIKKQIWIHPYE   93 (290)
T ss_pred             cCeeEeeECCCCCcHHHHHHHHHHHHhC---CCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHH-HHHHHHhhCccC
Confidence            3446899999999999999999999987   3211111000   011111  12211    122211 122222111122


Q ss_pred             CCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694         177 CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  227 (247)
Q Consensus       177 ~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~  227 (247)
                      .++.|++||++|+|.++.+++|++.|||++       .+++||++|+....
T Consensus        94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp-------~~~~fiL~~~~~~~  137 (290)
T PRK05917         94 SPYKIYIIHEADRMTLDAISAFLKVLEDPP-------QHGVIILTSAKPQR  137 (290)
T ss_pred             CCceEEEEechhhcCHHHHHHHHHHhhcCC-------CCeEEEEEeCChhh
Confidence            456999999999999999999999999987       88999999876433

>PRK06893 DNA replication initiation factor; Validated

Probab=98.97  E-value=3.6e-09  Score=90.68  Aligned_cols=98  Identities=9%  Similarity=0.190  Sum_probs=61.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  188 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie  188 (247)
                      .++|+||||||||++++++++.+..   .+....|+...  ..        ..+.    ..+...+.  ...+++|||++
T Consensus        41 ~l~l~G~~G~GKThL~~ai~~~~~~---~~~~~~y~~~~--~~--------~~~~----~~~~~~~~--~~dlLilDDi~  101 (229)
T PRK06893         41 FFYIWGGKSSGKSHLLKAVSNHYLL---NQRTAIYIPLS--KS--------QYFS----PAVLENLE--QQDLVCLDDLQ  101 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEeeHH--Hh--------hhhh----HHHHhhcc--cCCEEEEeChh
Confidence            4789999999999999999999765   44333333322  10        0010    11112222  34799999999


Q ss_pred             CCC--hhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHH
Q psy1694         189 KFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM  230 (247)
Q Consensus       189 k~~--~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~  230 (247)
                      .+.  +..+..|..+++...     +-.+.++|+|+|..++++.
T Consensus       102 ~~~~~~~~~~~l~~l~n~~~-----~~~~~illits~~~p~~l~  140 (229)
T PRK06893        102 AVIGNEEWELAIFDLFNRIK-----EQGKTLLLISADCSPHALS  140 (229)
T ss_pred             hhcCChHHHHHHHHHHHHHH-----HcCCcEEEEeCCCChHHcc
Confidence            875  344556666666421     1134567889999888776

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=98.96  E-value=3e-09  Score=96.26  Aligned_cols=43  Identities=9%  Similarity=0.234  Sum_probs=38.1

Q ss_pred             CCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694         177 CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  226 (247)
Q Consensus       177 ~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~  226 (247)
                      .++.|+|||++|+|.+...|+||+.|||++       .+++||++|+...
T Consensus       131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------~~t~fiL~t~~~~  173 (342)
T PRK06964        131 GGARVVVLYPAEALNVAAANALLKTLEEPP-------PGTVFLLVSARID  173 (342)
T ss_pred             CCceEEEEechhhcCHHHHHHHHHHhcCCC-------cCcEEEEEECChh
Confidence            456999999999999999999999999987       7889999987643

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=98.96  E-value=3.1e-09  Score=95.19  Aligned_cols=107  Identities=17%  Similarity=0.095  Sum_probs=66.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHH----H--HHHHHHHHHHHh--CCCe
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYR----L--QLTNWIISNVTA--CDRA  180 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~----~--~l~~~~~~~l~~--~~~~  180 (247)
                      .++|.||||||||++++.+|+.+..        +++.+++.....+. ..++...    +  ....+..+.+..  ..+.
T Consensus        66 ~ilL~G~pGtGKTtla~~lA~~l~~--------~~~rV~~~~~l~~~-DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~  136 (327)
T TIGR01650        66 RVMVQGYHGTGKSTHIEQIAARLNW--------PCVRVNLDSHVSRI-DLVGKDAIVLKDGKQITEFRDGILPWALQHNV  136 (327)
T ss_pred             cEEEEeCCCChHHHHHHHHHHHHCC--------CeEEEEecCCCChh-hcCCCceeeccCCcceeEEecCcchhHHhCCe
Confidence            4799999999999999999998633        67777764321110 0111000    0  000011111111  2347


Q ss_pred             EEEEeCCCCCChhhHHHHHhhccc-Ccccc-c----c-cCCceEEEEEeCC
Q psy1694         181 IFIFDEVDKFPKGLLDVIIPFIDH-HAVYN-Q----I-SFQNTIFLFLSNS  224 (247)
Q Consensus       181 vlilDEiek~~~~~~~~Ll~~Le~-~~~~~-~----~-~~~~~ifI~tSN~  224 (247)
                      ++++||++.++++++..|.++||. +.++. +    + ......+|+|.|.
T Consensus       137 illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np  187 (327)
T TIGR01650       137 ALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANT  187 (327)
T ss_pred             EEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCC
Confidence            799999999999999999999995 33321 1    2 2235668999996

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>KOG0651|consensus

Probab=98.95  E-value=4.7e-09  Score=92.37  Aligned_cols=133  Identities=14%  Similarity=0.200  Sum_probs=83.1

Q ss_pred             cCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          80 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      +-|-...+..+++.+.-++.++.     .-.-|+.++|+||||+|||++|++++..+-        .+|+.+..+++.  
T Consensus       134 ~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg--------~nfl~v~ss~lv--  203 (388)
T KOG0651|consen  134 VGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG--------VNFLKVVSSALV--  203 (388)
T ss_pred             hCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC--------CceEEeeHhhhh--
Confidence            45555555666665543333221     134578899999999999999999988742        478877776652  


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------ChhhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694         155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  223 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~-----------~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN  223 (247)
                       ..++++-...+.+....+-.. ..+++|+||||..           +..+|..|+.+++.-.  ......++-+|+|+|
T Consensus       204 -~kyiGEsaRlIRemf~yA~~~-~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmd--gfd~l~rVk~ImatN  279 (388)
T KOG0651|consen  204 -DKYIGESARLIRDMFRYAREV-IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMD--GFDTLHRVKTIMATN  279 (388)
T ss_pred             -hhhcccHHHHHHHHHHHHhhh-CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhc--cchhcccccEEEecC
Confidence             222222222222333222222 2389999999765           3367888888887421  122456788999999


Q ss_pred             CCh
Q psy1694         224 SGG  226 (247)
Q Consensus       224 ~g~  226 (247)
                      ...
T Consensus       280 rpd  282 (388)
T KOG0651|consen  280 RPD  282 (388)
T ss_pred             Ccc
Confidence            754

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.94  E-value=1.1e-08  Score=87.98  Aligned_cols=108  Identities=9%  Similarity=0.100  Sum_probs=62.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  188 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie  188 (247)
                      .++|+||+|+|||++++++++.+..   .+....|+..+  ..        ..+..    .+.+.+..  ..+++|||++
T Consensus        47 ~l~l~Gp~G~GKThLl~a~~~~~~~---~~~~v~y~~~~--~~--------~~~~~----~~~~~~~~--~dlliiDdi~  107 (235)
T PRK08084         47 YIYLWSREGAGRSHLLHAACAELSQ---RGRAVGYVPLD--KR--------AWFVP----EVLEGMEQ--LSLVCIDNIE  107 (235)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEHH--HH--------hhhhH----HHHHHhhh--CCEEEEeChh
Confidence            6799999999999999999998665   43222232221  11        00111    11122333  3699999999


Q ss_pred             CCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHH---HHHHHHHHHcC
Q psy1694         189 KFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEI---MNTFLELRKSG  240 (247)
Q Consensus       189 k~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i---~~~~~~~~~~g  240 (247)
                      .++.  ..+..|..++....     +..+..+|+|||..+..+   ...+......|
T Consensus       108 ~~~~~~~~~~~lf~l~n~~~-----e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g  159 (235)
T PRK08084        108 CIAGDELWEMAIFDLYNRIL-----ESGRTRLLITGDRPPRQLNLGLPDLASRLDWG  159 (235)
T ss_pred             hhcCCHHHHHHHHHHHHHHH-----HcCCCeEEEeCCCChHHcCcccHHHHHHHhCC
Confidence            9863  33444444433311     112346888999888874   45555555544

>PRK08727 hypothetical protein; Validated

Probab=98.93  E-value=1e-08  Score=88.10  Aligned_cols=102  Identities=12%  Similarity=0.145  Sum_probs=64.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  188 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie  188 (247)
                      .++|+||+|||||++++++++.+..   .+....|  +.+.+           +...+...+ ..+..  ..+|+|||++
T Consensus        43 ~l~l~G~~G~GKThL~~a~~~~~~~---~~~~~~y--~~~~~-----------~~~~~~~~~-~~l~~--~dlLiIDDi~  103 (233)
T PRK08727         43 WLYLSGPAGTGKTHLALALCAAAEQ---AGRSSAY--LPLQA-----------AAGRLRDAL-EALEG--RSLVALDGLE  103 (233)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEE--EeHHH-----------hhhhHHHHH-HHHhc--CCEEEEeCcc
Confidence            4799999999999999999998765   4432222  22222           111112222 22333  3699999999


Q ss_pred             CCC--hhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHH
Q psy1694         189 KFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE  235 (247)
Q Consensus       189 k~~--~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~  235 (247)
                      .++  +..+..+..+++...      .++..+|+|||..++++.....+
T Consensus       104 ~l~~~~~~~~~lf~l~n~~~------~~~~~vI~ts~~~p~~l~~~~~d  146 (233)
T PRK08727        104 SIAGQREDEVALFDFHNRAR------AAGITLLYTARQMPDGLALVLPD  146 (233)
T ss_pred             cccCChHHHHHHHHHHHHHH------HcCCeEEEECCCChhhhhhhhHH
Confidence            986  345566776666532      12345999999999887543333

>TIGR00368 Mg chelatase-related protein

Probab=98.93  E-value=2.3e-09  Score=101.50  Aligned_cols=129  Identities=16%  Similarity=0.185  Sum_probs=78.8

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccC--------------------C
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD--------------------K  138 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~--------------------g  138 (247)
                      .++||+.+++.+.-++    ....      .++|.||||+|||++|+.++..+......                    .
T Consensus       193 dv~Gq~~~~~al~~aa----~~g~------~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~  262 (499)
T TIGR00368       193 DIKGQQHAKRALEIAA----AGGH------NLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQI  262 (499)
T ss_pred             HhcCcHHHHhhhhhhc----cCCC------EEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhcccccc
Confidence            4788887765444332    2222      68999999999999999998754320000                    0


Q ss_pred             CCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc---c--cc-
Q psy1694         139 GTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN---Q--IS-  212 (247)
Q Consensus       139 ~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~---~--~~-  212 (247)
                      ...||...+++..   ....++   +- ...-.+.+..+.++++||||++++++.+|+.|++.||++.+..   +  .. 
T Consensus       263 ~~~Pf~~p~~s~s---~~~~~g---gg-~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~  335 (499)
T TIGR00368       263 KQRPFRSPHHSAS---KPALVG---GG-PIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFY  335 (499)
T ss_pred             ccCCccccccccc---hhhhhC---Cc-cccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceec
Confidence            0123332222110   000000   00 0012246778889999999999999999999999999986421   1  11 


Q ss_pred             CCceEEEEEeCC
Q psy1694         213 FQNTIFLFLSNS  224 (247)
Q Consensus       213 ~~~~ifI~tSN~  224 (247)
                      -.+..+|+++|.
T Consensus       336 pa~frlIaa~Np  347 (499)
T TIGR00368       336 PARFQLVAAMNP  347 (499)
T ss_pred             cCCeEEEEecCC
Confidence            146778999996

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>KOG0739|consensus

Probab=98.92  E-value=3.7e-09  Score=92.72  Aligned_cols=145  Identities=20%  Similarity=0.216  Sum_probs=88.8

Q ss_pred             ccHHHHHHHHHh------------hcCChHHHHHHHHHHHHH-----hhhcccCCCCC-eEEEEeecCCChHHHHHHHHH
Q psy1694          67 SNVRVLEEQLKQ------------HVHGQELAISHICGALKN-----HFQNRYHNTKA-LAISLHGLPGTGKNYVTDFIV  128 (247)
Q Consensus        67 ~~~~~L~~~L~~------------~l~Gq~~a~~~l~~~l~~-----~~~~~~~~~kp-l~lll~G~~GtGKt~~A~~la  128 (247)
                      ++.+.|+..|..            .+-|-+.|.+.|.+++.-     ++-+.  .++| ..+||+|||||||+++|+++|
T Consensus       110 pe~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG--kR~PwrgiLLyGPPGTGKSYLAKAVA  187 (439)
T KOG0739|consen  110 PEKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG--KRKPWRGILLYGPPGTGKSYLAKAVA  187 (439)
T ss_pred             hhHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC--CCCcceeEEEeCCCCCcHHHHHHHHH
Confidence            345667777766            367888899999888752     12122  2355 469999999999999999997


Q ss_pred             HHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHH---HHHHHHhCCCeEEEEeCCCCCCh-------hh----
Q psy1694         129 SSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNW---IISNVTACDRAIFIFDEVDKFPK-------GL----  194 (247)
Q Consensus       129 ~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~---~~~~l~~~~~~vlilDEiek~~~-------~~----  194 (247)
                      -..        .+.|+.+..+.+       +..|-+..+..   +.+.-++...+++|+||||.+.-       +.    
T Consensus       188 TEA--------nSTFFSvSSSDL-------vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRI  252 (439)
T KOG0739|consen  188 TEA--------NSTFFSVSSSDL-------VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRI  252 (439)
T ss_pred             hhc--------CCceEEeehHHH-------HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHH
Confidence            762        256777765544       33343322232   33344455669999999998732       11    


Q ss_pred             HHHHHhhcccCcccccccCCceEEEEEeCCC---hHHHHHH
Q psy1694         195 LDVIIPFIDHHAVYNQISFQNTIFLFLSNSG---GTEIMNT  232 (247)
Q Consensus       195 ~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g---~~~i~~~  232 (247)
                      -.-+|-.|+.    -+.|...+.++..+|..   .+.|.+.
T Consensus       253 KTEfLVQMqG----VG~d~~gvLVLgATNiPw~LDsAIRRR  289 (439)
T KOG0739|consen  253 KTEFLVQMQG----VGNDNDGVLVLGATNIPWVLDSAIRRR  289 (439)
T ss_pred             HHHHHHhhhc----cccCCCceEEEecCCCchhHHHHHHHH
Confidence            1122222221    13355667777778865   3444443

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=98.92  E-value=8.5e-10  Score=85.84  Aligned_cols=102  Identities=17%  Similarity=0.283  Sum_probs=54.5

Q ss_pred             EEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc-cccCCCCChHH--HHHHHHHHHHHHHHHhC--CCeEEEE
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS-RIHFPNENHVS--LYRLQLTNWIISNVTAC--DRAIFIF  184 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~-~l~~~~~~~v~--~~~~~l~~~~~~~l~~~--~~~vlil  184 (247)
                      +|++|+||+|||++|+++|+.+-.        .|.++-+. .+. | ....+  -|... .+.+  .+...  -..++++
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~--------~f~RIq~tpdll-P-sDi~G~~v~~~~-~~~f--~~~~GPif~~ill~   68 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGL--------SFKRIQFTPDLL-P-SDILGFPVYDQE-TGEF--EFRPGPIFTNILLA   68 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT----------EEEEE--TT---H-HHHHEEEEEETT-TTEE--EEEE-TT-SSEEEE
T ss_pred             EeeECCCccHHHHHHHHHHHHcCC--------ceeEEEecCCCC-c-ccceeeeeeccC-CCee--EeecChhhhceeee
Confidence            689999999999999999998532        45554331 110 0 00000  00000 0000  00011  1279999


Q ss_pred             eCCCCCChhhHHHHHhhcccCcccc-cc--cCCc-eEEEEEeCC
Q psy1694         185 DEVDKFPKGLLDVIIPFIDHHAVYN-QI--SFQN-TIFLFLSNS  224 (247)
Q Consensus       185 DEiek~~~~~~~~Ll~~Le~~~~~~-~~--~~~~-~ifI~tSN~  224 (247)
                      ||+++.|+..|++|+++|+|++++. +.  ...+ ..+|.|-|-
T Consensus        69 DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp  112 (131)
T PF07726_consen   69 DEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNP  112 (131)
T ss_dssp             ETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-T
T ss_pred             cccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCc
Confidence            9999999999999999999998653 32  2333 566777775

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>smart00350 MCM minichromosome maintenance proteins

Probab=98.92  E-value=2.5e-09  Score=101.81  Aligned_cols=141  Identities=16%  Similarity=0.158  Sum_probs=82.6

Q ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHhhhc----ccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee-
Q psy1694          72 LEEQLKQHVHGQELAISHICGALKNHFQN----RYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK-  146 (247)
Q Consensus        72 L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~----~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~-  146 (247)
                      |.+.+...++|++.++..+.-++-.....    ........++||.|+||||||++|+.+++.. +   .   +.|+.. 
T Consensus       197 l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~-~---r---~~~~~~~  269 (509)
T smart00350      197 LSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTA-P---R---AVYTTGK  269 (509)
T ss_pred             HHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHc-C---c---ceEcCCC
Confidence            44555557999998876665544332100    0001223469999999999999999998763 2   1   223221 


Q ss_pred             --ecccccCCC-CC-hHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccc---ccc---cCCce
Q psy1694         147 --FNSRIHFPN-EN-HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY---NQI---SFQNT  216 (247)
Q Consensus       147 --~~~~l~~~~-~~-~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~---~~~---~~~~~  216 (247)
                        ++..+.... .. ..+.+.     .-.+.+..+.++++++||+++|++..|..|+++|+++.+.   .+.   --.++
T Consensus       270 ~~~~~~l~~~~~~~~~~g~~~-----~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~  344 (509)
T smart00350      270 GSSAVGLTAAVTRDPETREFT-----LEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARC  344 (509)
T ss_pred             CCCcCCccccceEccCcceEE-----ecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCc
Confidence              111111000 00 000000     0113456678899999999999999999999999987642   121   11345


Q ss_pred             EEEEEeCC
Q psy1694         217 IFLFLSNS  224 (247)
Q Consensus       217 ifI~tSN~  224 (247)
                      .+|+++|-
T Consensus       345 ~viAa~NP  352 (509)
T smart00350      345 SVLAAANP  352 (509)
T ss_pred             EEEEEeCC
Confidence            56666663

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.91  E-value=9.6e-09  Score=78.51  Aligned_cols=112  Identities=13%  Similarity=0.107  Sum_probs=61.4

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCC----------ChHHHHHHHHHHHHHHHHHhC
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNE----------NHVSLYRLQLTNWIISNVTAC  177 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~----------~~v~~~~~~l~~~~~~~l~~~  177 (247)
                      ..++|+||||||||++++.++..+..   .+  ..++.+.+........          .....................
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP---PG--GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL   77 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC---CC--CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence            36899999999999999999998655   22  2345554433211000          000001111112232333444


Q ss_pred             CCeEEEEeCCCCCChhhHHHHHhhcccCc-ccccccCCceEEEEEeCC
Q psy1694         178 DRAIFIFDEVDKFPKGLLDVIIPFIDHHA-VYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       178 ~~~vlilDEiek~~~~~~~~Ll~~Le~~~-~~~~~~~~~~ifI~tSN~  224 (247)
                      ...++++||++++................ ........+..+|+++|.
T Consensus        78 ~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       78 KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             CCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence            45999999999998876665544311000 000012256788999884

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=1.9e-08  Score=91.98  Aligned_cols=132  Identities=17%  Similarity=0.233  Sum_probs=85.0

Q ss_pred             cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChH
Q psy1694          80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV  159 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v  159 (247)
                      +-+.+..++++...+...+.+.    .|.+++++|+||||||.+++.+.+.+..   ......++++||-....+..-..
T Consensus        19 l~~Re~ei~~l~~~l~~~~~~~----~p~n~~iyG~~GTGKT~~~~~v~~~l~~---~~~~~~~~yINc~~~~t~~~i~~   91 (366)
T COG1474          19 LPHREEEINQLASFLAPALRGE----RPSNIIIYGPTGTGKTATVKFVMEELEE---SSANVEVVYINCLELRTPYQVLS   91 (366)
T ss_pred             ccccHHHHHHHHHHHHHHhcCC----CCccEEEECCCCCCHhHHHHHHHHHHHh---hhccCceEEEeeeeCCCHHHHHH
Confidence            6777778888888887776554    4556899999999999999999999765   32233378999855432221000


Q ss_pred             ------------HHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCCChh---hHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694         160 ------------SLYRLQLTNWIISNVTAC-DRAIFIFDEVDKFPKG---LLDVIIPFIDHHAVYNQISFQNTIFLFLSN  223 (247)
Q Consensus       160 ------------~~~~~~l~~~~~~~l~~~-~~~vlilDEiek~~~~---~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN  223 (247)
                                  +.-..+..+.+.+.+... ..-+++|||+|.|...   ++..|.+.-++.       ..+.++|+++|
T Consensus        92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~-------~~~v~vi~i~n  164 (366)
T COG1474          92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN-------KVKVSIIAVSN  164 (366)
T ss_pred             HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc-------ceeEEEEEEec
Confidence                        000112233444555553 3478889999999775   444454444443       35677888887


Q ss_pred             CC
Q psy1694         224 SG  225 (247)
Q Consensus       224 ~g  225 (247)
                      .-
T Consensus       165 ~~  166 (366)
T COG1474         165 DD  166 (366)
T ss_pred             cH
Confidence            64

>PRK06921 hypothetical protein; Provisional

Probab=98.91  E-value=1.5e-08  Score=88.90  Aligned_cols=104  Identities=12%  Similarity=0.148  Sum_probs=63.9

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhhccccC-CCCCcceeeecccccCCCCChHHHHHHHHH--HHHHHHHHhCCCeEEEE
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIFKRYKD-KGTSRFVHKFNSRIHFPNENHVSLYRLQLT--NWIISNVTACDRAIFIF  184 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~~~~~~-g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~--~~~~~~l~~~~~~vlil  184 (247)
                      ..++|+||||+|||++|.+|++.+..   . +..  .+.+...++       +........  ......+.  ...+|||
T Consensus       118 ~~l~l~G~~G~GKThLa~aia~~l~~---~~g~~--v~y~~~~~l-------~~~l~~~~~~~~~~~~~~~--~~dlLiI  183 (266)
T PRK06921        118 NSIALLGQPGSGKTHLLTAAANELMR---KKGVP--VLYFPFVEG-------FGDLKDDFDLLEAKLNRMK--KVEVLFI  183 (266)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHhh---hcCce--EEEEEHHHH-------HHHHHHHHHHHHHHHHHhc--CCCEEEE
Confidence            36899999999999999999999765   3 322  222222221       111111110  11112222  3479999


Q ss_pred             eCCCC-------CChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHH
Q psy1694         185 DEVDK-------FPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN  231 (247)
Q Consensus       185 DEiek-------~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~  231 (247)
                      ||++.       .++..+..|..+++.+..      ++..+|+|||..++++.+
T Consensus       184 DDl~~~~~g~e~~t~~~~~~lf~iin~R~~------~~k~tIitsn~~~~el~~  231 (266)
T PRK06921        184 DDLFKPVNGKPRATEWQIEQMYSVLNYRYL------NHKPILISSELTIDELLD  231 (266)
T ss_pred             eccccccCCCccCCHHHHHHHHHHHHHHHH------CCCCEEEECCCCHHHHhh
Confidence            99933       455566778888876421      234579999999988764

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.90  E-value=1.2e-08  Score=86.93  Aligned_cols=90  Identities=10%  Similarity=0.113  Sum_probs=61.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  188 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie  188 (247)
                      .++|+||+|||||++|+++++.+..   .+  .+++.+++....           .    .. .  .....+++++||++
T Consensus        44 ~~~l~G~~G~GKT~La~ai~~~~~~---~~--~~~~~i~~~~~~-----------~----~~-~--~~~~~~~liiDdi~  100 (227)
T PRK08903         44 FFYLWGEAGSGRSHLLQALVADASY---GG--RNARYLDAASPL-----------L----AF-D--FDPEAELYAVDDVE  100 (227)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHh---CC--CcEEEEehHHhH-----------H----HH-h--hcccCCEEEEeChh
Confidence            5799999999999999999998655   33  345555543320           0    01 1  12235799999999


Q ss_pred             CCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694         189 KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  226 (247)
Q Consensus       189 k~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~  226 (247)
                      .+++..+..|..+++...     +..+.++|++++..+
T Consensus       101 ~l~~~~~~~L~~~~~~~~-----~~~~~~vl~~~~~~~  133 (227)
T PRK08903        101 RLDDAQQIALFNLFNRVR-----AHGQGALLVAGPAAP  133 (227)
T ss_pred             hcCchHHHHHHHHHHHHH-----HcCCcEEEEeCCCCH
Confidence            999999999988886522     113345777777654

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.90  E-value=7.3e-09  Score=103.86  Aligned_cols=115  Identities=16%  Similarity=0.199  Sum_probs=78.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~  153 (247)
                      .++|++..++.+.+.+.+..  ++      +++|+||||||||++|+.+|..+..   ...     ..+++.++.+.+..
T Consensus       180 ~~igr~~ei~~~~~~L~r~~--~~------n~lL~G~pGvGKTal~~~la~~i~~---~~vp~~l~~~~i~~l~~~~l~a  248 (821)
T CHL00095        180 PVIGREKEIERVIQILGRRT--KN------NPILIGEPGVGKTAIAEGLAQRIVN---RDVPDILEDKLVITLDIGLLLA  248 (821)
T ss_pred             CCCCcHHHHHHHHHHHcccc--cC------CeEEECCCCCCHHHHHHHHHHHHHh---CCCChhhcCCeEEEeeHHHHhc
Confidence            48999999988888876532  11      4589999999999999999998653   111     23566666554432


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------hhHHHHHhhcccCc
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------GLLDVIIPFIDHHA  206 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------~~~~~Ll~~Le~~~  206 (247)
                       ...+.++|++.+++.+.. +......++||||++.+-.        ++.+.|++.|..+.
T Consensus       249 -g~~~~ge~e~rl~~i~~~-~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~  307 (821)
T CHL00095        249 -GTKYRGEFEERLKRIFDE-IQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGE  307 (821)
T ss_pred             -cCCCccHHHHHHHHHHHH-HHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCC
Confidence             123335566655555533 3445568999999975532        46788999998764

>PRK04132 replication factor C small subunit; Provisional

Probab=98.89  E-value=6.3e-09  Score=103.39  Aligned_cols=98  Identities=11%  Similarity=0.141  Sum_probs=73.6

Q ss_pred             EEee--cCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHh-----CCCeEEE
Q psy1694         111 SLHG--LPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA-----CDRAIFI  183 (247)
Q Consensus       111 ll~G--~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~-----~~~~vli  183 (247)
                      +..|  |++.|||++|.++|+.+++   ++...+++.+|.+..     ..++..    ++.+......     .++.++|
T Consensus       568 ~~~G~lPh~lGKTT~A~ala~~l~g---~~~~~~~lElNASd~-----rgid~I----R~iIk~~a~~~~~~~~~~KVvI  635 (846)
T PRK04132        568 FIGGNLPTVLHNTTAALALARELFG---ENWRHNFLELNASDE-----RGINVI----REKVKEFARTKPIGGASFKIIF  635 (846)
T ss_pred             hhcCCCCCcccHHHHHHHHHHhhhc---ccccCeEEEEeCCCc-----ccHHHH----HHHHHHHHhcCCcCCCCCEEEE
Confidence            4568  9999999999999999988   666678888887653     112222    2223222211     1347999


Q ss_pred             EeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694         184 FDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  227 (247)
Q Consensus       184 lDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~  227 (247)
                      |||+|+|+.+.|++|++.||+++       .++.||+++|....
T Consensus       636 IDEaD~Lt~~AQnALLk~lEep~-------~~~~FILi~N~~~k  672 (846)
T PRK04132        636 LDEADALTQDAQQALRRTMEMFS-------SNVRFILSCNYSSK  672 (846)
T ss_pred             EECcccCCHHHHHHHHHHhhCCC-------CCeEEEEEeCChhh
Confidence            99999999999999999999976       78899999997543

>CHL00206 ycf2 Ycf2; Provisional

Probab=98.88  E-value=6.9e-09  Score=108.43  Aligned_cols=124  Identities=12%  Similarity=0.222  Sum_probs=75.2

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCC----------C---------hH--------
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNE----------N---------HV--------  159 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~----------~---------~v--------  159 (247)
                      |..+|++||||||||++|+++|...+        .||+.+..+++....+          +         .+        
T Consensus      1630 PKGILLiGPPGTGKTlLAKALA~es~--------VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206       1630 SRGILVIGSIGTGRSYLVKYLATNSY--------VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred             CCceEEECCCCCCHHHHHHHHHHhcC--------CceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence            45799999999999999999998843        4888888776642110          0         00        


Q ss_pred             -H--------HHHHHHHHHHHHHH---HhCCCeEEEEeCCCCCChh-----hHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694         160 -S--------LYRLQLTNWIISNV---TACDRAIFIFDEVDKFPKG-----LLDVIIPFIDHHAVYNQISFQNTIFLFLS  222 (247)
Q Consensus       160 -~--------~~~~~l~~~~~~~l---~~~~~~vlilDEiek~~~~-----~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS  222 (247)
                       +        .+.+.-..++...+   ++...+||+|||||.+...     .+..|+..|+...  ...+.+++++|++|
T Consensus      1702 ~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~--~~~s~~~VIVIAAT 1779 (2281)
T CHL00206       1702 LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDC--ERCSTRNILVIAST 1779 (2281)
T ss_pred             hhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccc--ccCCCCCEEEEEeC
Confidence             0        00110011122223   3445699999999999753     3567777777421  11133678899999


Q ss_pred             CCChHHHHHHHHHHHHcCcccc
Q psy1694         223 NSGGTEIMNTFLELRKSGERYI  244 (247)
Q Consensus       223 N~g~~~i~~~~~~~~~~g~~Re  244 (247)
                      |... .+-   ..+++-||+..
T Consensus      1780 NRPD-~LD---PALLRPGRFDR 1797 (2281)
T CHL00206       1780 HIPQ-KVD---PALIAPNKLNT 1797 (2281)
T ss_pred             CCcc-cCC---HhHcCCCCCCe
Confidence            9743 333   23455566544

>KOG0728|consensus

Probab=98.88  E-value=1.5e-08  Score=87.01  Aligned_cols=127  Identities=16%  Similarity=0.246  Sum_probs=78.6

Q ss_pred             cCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          80 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      +-|-+..+..+.+.+.--...|.     .-.+|..++|+||||||||++|+++|.|..+        .|+++.-+++   
T Consensus       149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c--------~firvsgsel---  217 (404)
T KOG0728|consen  149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC--------TFIRVSGSEL---  217 (404)
T ss_pred             hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcce--------EEEEechHHH---
Confidence            44566666666666643211111     1336778999999999999999999988544        5777765554   


Q ss_pred             CCChHHHHHHHHHHHHHHH---HHhCCCeEEEEeCCCCCC-----------hhhHHHHHhhcccCcccccc-cCCceEEE
Q psy1694         155 NENHVSLYRLQLTNWIISN---VTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQI-SFQNTIFL  219 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~---l~~~~~~vlilDEiek~~-----------~~~~~~Ll~~Le~~~~~~~~-~~~~~ifI  219 (247)
                          +..|-+.=..-+++.   -+....+++|.||||.+.           .++|..++.+|..   .|+. ...|.-+|
T Consensus       218 ----vqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnq---ldgfeatknikvi  290 (404)
T KOG0728|consen  218 ----VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQ---LDGFEATKNIKVI  290 (404)
T ss_pred             ----HHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHh---ccccccccceEEE
Confidence                333433111112221   223344899999999873           3688888887754   2232 23456678


Q ss_pred             EEeCC
Q psy1694         220 FLSNS  224 (247)
Q Consensus       220 ~tSN~  224 (247)
                      +.+|.
T Consensus       291 matnr  295 (404)
T KOG0728|consen  291 MATNR  295 (404)
T ss_pred             Eeccc
Confidence            88875

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=98.88  E-value=8.5e-09  Score=89.52  Aligned_cols=111  Identities=14%  Similarity=0.162  Sum_probs=71.9

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCc---ceee---ecccccC--CCCChHHHHHHHHHHHHHHHHH--
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR---FVHK---FNSRIHF--PNENHVSLYRLQLTNWIISNVT--  175 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~---~v~~---~~~~l~~--~~~~~v~~~~~~l~~~~~~~l~--  175 (247)
                      .|-.++|+||+|+||..+|..+|+.+.+....+..+.   +..+   ..+.+++  |....++  .++..+ +...+.  
T Consensus         6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~--id~ir~-l~~~l~~~   82 (261)
T PRK05818          6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIK--KEDALS-IINKLNRP   82 (261)
T ss_pred             CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCC--HHHHHH-HHHHHccC
Confidence            4557899999999999999999999887211111111   1111   1122222  2221221  112222 222222  


Q ss_pred             ---hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694         176 ---ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  226 (247)
Q Consensus       176 ---~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~  226 (247)
                         ..++.|+++|++|+|.....++||++|||++       .+++||++|+...
T Consensus        83 s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp-------~~t~fiLit~~~~  129 (261)
T PRK05818         83 SVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPP-------KNTYGIFTTRNEN  129 (261)
T ss_pred             chhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCC-------CCeEEEEEECChH
Confidence               2356999999999999999999999999988       8999999987643

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.84  E-value=1.7e-08  Score=101.61  Aligned_cols=125  Identities=14%  Similarity=0.146  Sum_probs=77.3

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~  153 (247)
                      .++|++..++.+.+.+.+.-  ..      +++|+||||||||++++.+++.+..   ...     ..+++.++.+.+..
T Consensus       174 ~~igr~~ei~~~~~~l~r~~--~~------n~lL~G~pGvGKT~l~~~la~~i~~---~~~p~~l~~~~~~~l~~~~l~a  242 (852)
T TIGR03346       174 PVIGRDEEIRRTIQVLSRRT--KN------NPVLIGEPGVGKTAIVEGLAQRIVN---GDVPESLKNKRLLALDMGALIA  242 (852)
T ss_pred             cCCCcHHHHHHHHHHHhcCC--CC------ceEEEcCCCCCHHHHHHHHHHHHhc---cCCchhhcCCeEEEeeHHHHhh
Confidence            49999998888877775421  11      4578999999999999999998644   111     22344444433321


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------hhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                       ...+.+.+...+...+...-......++||||++.+..        +..+.|++.+..+.         ..+|.+||.
T Consensus       243 -~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~---------i~~IgaTt~  311 (852)
T TIGR03346       243 -GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGE---------LHCIGATTL  311 (852)
T ss_pred             -cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCc---------eEEEEeCcH
Confidence             11222334444444443222223468999999998852        46788888887653         356666554

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=98.83  E-value=8.3e-09  Score=102.49  Aligned_cols=129  Identities=13%  Similarity=0.038  Sum_probs=77.3

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHHHhhhc----c---------cCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC
Q psy1694          73 EEQLKQHVHGQELAISHICGALKNHFQN----R---------YHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG  139 (247)
Q Consensus        73 ~~~L~~~l~Gq~~a~~~l~~~l~~~~~~----~---------~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~  139 (247)
                      ...+...++|.+.++..+.=++-.....    .         ...+....+||.|+||||||.+|+.+++.- .+..-..
T Consensus       445 ~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~ls-pR~~yts  523 (915)
T PTZ00111        445 LDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLS-PRSIYTS  523 (915)
T ss_pred             HHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhC-CccccCC
Confidence            3344446899998887776555332110    0         001223479999999999999999997752 2000001


Q ss_pred             CCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcc
Q psy1694         140 TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV  207 (247)
Q Consensus       140 ~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~  207 (247)
                      ..+++.+.+...........+.+     ..-.+.+..+.+|+++|||+++|++..|.+|+++|+.+++
T Consensus       524 G~~~s~vgLTa~~~~~d~~tG~~-----~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtI  586 (915)
T PTZ00111        524 GKSSSSVGLTASIKFNESDNGRA-----MIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTV  586 (915)
T ss_pred             CCCCccccccchhhhcccccCcc-----cccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEE
Confidence            23455444432110000000101     0112456678889999999999999999999999998764

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=98.83  E-value=1.2e-08  Score=100.95  Aligned_cols=125  Identities=11%  Similarity=0.135  Sum_probs=79.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~  153 (247)
                      .++|.+..++.+.+.+.+.  .+.      +++|+||||||||++|+.+|..+..   ...     ...++..+.+.+..
T Consensus       187 ~liGR~~ei~~~i~iL~r~--~~~------n~LLvGppGvGKT~lae~la~~i~~---~~vP~~l~~~~~~~l~~~~lla  255 (758)
T PRK11034        187 PLIGREKELERAIQVLCRR--RKN------NPLLVGESGVGKTAIAEGLAWRIVQ---GDVPEVMADCTIYSLDIGSLLA  255 (758)
T ss_pred             cCcCCCHHHHHHHHHHhcc--CCC------CeEEECCCCCCHHHHHHHHHHHHHh---cCCCchhcCCeEEeccHHHHhc
Confidence            5999999999998877763  122      4588999999999999999987544   221     11222222222211


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC---------ChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~---------~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                       ...+.+.+.+.+...+ ..+..+..+++||||++.+         ..++.+.|++++..+         +..+|.+||.
T Consensus       256 -G~~~~Ge~e~rl~~l~-~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g---------~i~vIgATt~  324 (758)
T PRK11034        256 -GTKYRGDFEKRFKALL-KQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG---------KIRVIGSTTY  324 (758)
T ss_pred             -ccchhhhHHHHHHHHH-HHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC---------CeEEEecCCh
Confidence             1122334444444433 3445666789999999876         234566788888774         4567777766


Q ss_pred             C
Q psy1694         225 G  225 (247)
Q Consensus       225 g  225 (247)
                      .
T Consensus       325 ~  325 (758)
T PRK11034        325 Q  325 (758)
T ss_pred             H
Confidence            3

>KOG0735|consensus

Probab=98.82  E-value=2.7e-08  Score=95.57  Aligned_cols=133  Identities=17%  Similarity=0.201  Sum_probs=82.8

Q ss_pred             cCChHHHHHHHHHHHHHhhh-----cccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          80 VHGQELAISHICGALKNHFQ-----NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~-----~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      +-|-..+.+.+.+.+.--..     ....-+.+..++|+||||||||++|.++|.. ++       -+|+.+.-+++   
T Consensus       669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~-~~-------~~fisvKGPEl---  737 (952)
T KOG0735|consen  669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASN-SN-------LRFISVKGPEL---  737 (952)
T ss_pred             cccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhh-CC-------eeEEEecCHHH---
Confidence            55666666666666642100     0110133447999999999999999999776 22       25655544443   


Q ss_pred             CCChHHHHHHHHHHHHHHHHH---hCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEE
Q psy1694         155 NENHVSLYRLQLTNWIISNVT---ACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLF  220 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~---~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~  220 (247)
                          ...|-++.+..++..+.   .|..+++||||+|.+.|           -+.+.|+.-||.-+      -=+.++|+
T Consensus       738 ----L~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E------gl~GV~i~  807 (952)
T KOG0735|consen  738 ----LSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE------GLDGVYIL  807 (952)
T ss_pred             ----HHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc------ccceEEEE
Confidence                23344433444444444   45669999999999976           36788888887643      24557777


Q ss_pred             EeCCChHHHHHHH
Q psy1694         221 LSNSGGTEIMNTF  233 (247)
Q Consensus       221 tSN~g~~~i~~~~  233 (247)
                      .+..-++-|...+
T Consensus       808 aaTsRpdliDpAL  820 (952)
T KOG0735|consen  808 AATSRPDLIDPAL  820 (952)
T ss_pred             EecCCccccCHhh
Confidence            7776666666443

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=98.81  E-value=7.1e-08  Score=90.56  Aligned_cols=136  Identities=13%  Similarity=0.120  Sum_probs=77.9

Q ss_pred             HHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          75 QLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        75 ~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      .++..+.|.+..  ....++..++..+.....  .++|+|++|+|||++++++++.+..   .......+.+.+.++   
T Consensus       113 tFdnFv~g~~n~--~A~~aa~~~a~~~~~~~n--pl~i~G~~G~GKTHLl~Ai~~~l~~---~~~~~~v~yv~~~~f---  182 (450)
T PRK14087        113 TFENFVIGSSNE--QAFIAVQTVSKNPGISYN--PLFIYGESGMGKTHLLKAAKNYIES---NFSDLKVSYMSGDEF---  182 (450)
T ss_pred             chhcccCCCcHH--HHHHHHHHHHhCcCcccC--ceEEECCCCCcHHHHHHHHHHHHHH---hCCCCeEEEEEHHHH---
Confidence            455567786432  223444444433321122  3689999999999999999998654   222233444443332   


Q ss_pred             CCChHHHHHHHHHH---HHHHHHH-hCCCeEEEEeCCCCCC--hhhHHHHHhhcccCcccccccCCceEEEEEeCCChHH
Q psy1694         155 NENHVSLYRLQLTN---WIISNVT-ACDRAIFIFDEVDKFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE  228 (247)
Q Consensus       155 ~~~~v~~~~~~l~~---~~~~~l~-~~~~~vlilDEiek~~--~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~  228 (247)
                          ...+...+..   .+..... .....+|+|||++.+.  +..++.|..++.....      ++..+|+|||..++.
T Consensus       183 ----~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~------~~k~iIltsd~~P~~  252 (450)
T PRK14087        183 ----ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIE------NDKQLFFSSDKSPEL  252 (450)
T ss_pred             ----HHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHH------cCCcEEEECCCCHHH
Confidence                1112211111   1111111 1334799999999987  5677777777765321      233689999999887


Q ss_pred             HH
Q psy1694         229 IM  230 (247)
Q Consensus       229 i~  230 (247)
                      ++
T Consensus       253 l~  254 (450)
T PRK14087        253 LN  254 (450)
T ss_pred             Hh
Confidence            75

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=98.80  E-value=2.2e-08  Score=92.67  Aligned_cols=138  Identities=12%  Similarity=0.110  Sum_probs=77.0

Q ss_pred             HHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694          76 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN  155 (247)
Q Consensus        76 L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~  155 (247)
                      ++..++|.+...  ...++..+...+.  ..+..++|+||+|+|||++++++++.+..   ......++.+++..+..  
T Consensus       109 fd~fi~g~~n~~--a~~~~~~~~~~~~--~~~n~l~l~G~~G~GKThL~~ai~~~l~~---~~~~~~v~yi~~~~~~~--  179 (405)
T TIGR00362       109 FDNFVVGKSNRL--AHAAALAVAENPG--KAYNPLFIYGGVGLGKTHLLHAIGNEILE---NNPNAKVVYVSSEKFTN--  179 (405)
T ss_pred             ccccccCCcHHH--HHHHHHHHHhCcC--ccCCeEEEECCCCCcHHHHHHHHHHHHHH---hCCCCcEEEEEHHHHHH--
Confidence            333466754432  2333344433322  12235789999999999999999999765   32234455665543210  


Q ss_pred             CChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHH
Q psy1694         156 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN  231 (247)
Q Consensus       156 ~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~  231 (247)
                       .............+.+.+..  .++|+|||++.+..  ..+..+...++....      .+..+|+|||..++++..
T Consensus       180 -~~~~~~~~~~~~~~~~~~~~--~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~------~~~~iiits~~~p~~l~~  248 (405)
T TIGR00362       180 -DFVNALRNNKMEEFKEKYRS--VDLLLIDDIQFLAGKERTQEEFFHTFNALHE------NGKQIVLTSDRPPKELPG  248 (405)
T ss_pred             -HHHHHHHcCCHHHHHHHHHh--CCEEEEehhhhhcCCHHHHHHHHHHHHHHHH------CCCCEEEecCCCHHHHhh
Confidence             00010100001112233333  37999999998854  456667776664210      233578899988887764

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>KOG0726|consensus

Probab=98.79  E-value=1.4e-08  Score=88.90  Aligned_cols=128  Identities=16%  Similarity=0.281  Sum_probs=79.9

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .+-|-+..++.+.+++.--+.++.     ...-|..++++|+||||||++|+++|+.. +       ..|.++--+++  
T Consensus       186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT-S-------ATFlRvvGseL--  255 (440)
T KOG0726|consen  186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT-S-------ATFLRVVGSEL--  255 (440)
T ss_pred             ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc-c-------hhhhhhhhHHH--
Confidence            467788888888888864332221     02345678999999999999999998863 1       35666654444  


Q ss_pred             CCCChHHHHHHH---HHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCC-ceEE
Q psy1694         154 PNENHVSLYRLQ---LTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQ-NTIF  218 (247)
Q Consensus       154 ~~~~~v~~~~~~---l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~-~~if  218 (247)
                           +..|-+.   +-.++...-.....+++|+||||....           ++|..++.+|..   .++.|.| .+-+
T Consensus       256 -----iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQ---ldGFdsrgDvKv  327 (440)
T KOG0726|consen  256 -----IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ---LDGFDSRGDVKV  327 (440)
T ss_pred             -----HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHh---ccCccccCCeEE
Confidence                 2333221   122222222334459999999987732           578888877754   2333333 4557


Q ss_pred             EEEeCC
Q psy1694         219 LFLSNS  224 (247)
Q Consensus       219 I~tSN~  224 (247)
                      |+.+|.
T Consensus       328 imATnr  333 (440)
T KOG0726|consen  328 IMATNR  333 (440)
T ss_pred             EEeccc
Confidence            777775

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=98.79  E-value=4.8e-08  Score=96.47  Aligned_cols=138  Identities=17%  Similarity=0.208  Sum_probs=85.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhcccc-CCCC-CcceeeecccccCCCC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-DKGT-SRFVHKFNSRIHFPNE  156 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~-~g~~-~~~v~~~~~~l~~~~~  156 (247)
                      .|.|.+.-++.|...+...+.+..   .+.+++++|+||||||.+++.+.+.|-.... .+.. -.++++||..+..+..
T Consensus       756 ~LPhREeEIeeLasfL~paIkgsg---pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s  832 (1164)
T PTZ00112        756 YLPCREKEIKEVHGFLESGIKQSG---SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA  832 (1164)
T ss_pred             cCCChHHHHHHHHHHHHHHHhcCC---CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence            588999999999999988765432   1124679999999999999999888643100 1111 3467888854322211


Q ss_pred             ChHHH--------------HHHHHHHHHHHHH-HhCC-CeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEE
Q psy1694         157 NHVSL--------------YRLQLTNWIISNV-TACD-RAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLF  220 (247)
Q Consensus       157 ~~v~~--------------~~~~l~~~~~~~l-~~~~-~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~  220 (247)
                      .+..-              ....+...+ ..+ .... ..+|||||||.+....++.|+.+++....    .-.+.++|+
T Consensus       833 IYqvI~qqL~g~~P~~GlsS~evLerLF-~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~----s~SKLiLIG  907 (1164)
T PTZ00112        833 AYQVLYKQLFNKKPPNALNSFKILDRLF-NQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTK----INSKLVLIA  907 (1164)
T ss_pred             HHHHHHHHHcCCCCCccccHHHHHHHHH-hhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhc----cCCeEEEEE
Confidence            10000              001111111 222 1122 25899999999987777888877765321    225788999


Q ss_pred             EeCC
Q psy1694         221 LSNS  224 (247)
Q Consensus       221 tSN~  224 (247)
                      +||.
T Consensus       908 ISNd  911 (1164)
T PTZ00112        908 ISNT  911 (1164)
T ss_pred             ecCc
Confidence            9984

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=98.78  E-value=6.9e-08  Score=87.02  Aligned_cols=113  Identities=11%  Similarity=0.192  Sum_probs=67.6

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee---------eccccc--CCC-----CC------hHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK---------FNSRIH--FPN-----EN------HVSLYR  163 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~---------~~~~l~--~~~-----~~------~v~~~~  163 (247)
                      .|-.++|+||+|+||+++|+.+|+.+.+..+.....++=..         +.+.+.  .|.     .+      .++..+
T Consensus        20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR   99 (325)
T PRK08699         20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR   99 (325)
T ss_pred             cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence            44478999999999999999999998762110001111000         001111  110     01      122222


Q ss_pred             HHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694         164 LQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  226 (247)
Q Consensus       164 ~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~  226 (247)
                      + +.+.+...-...++.|+++|+++.|++..++.|++.||+..       .++.||++|+...
T Consensus       100 ~-l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-------~~~~~Ilvth~~~  154 (325)
T PRK08699        100 E-IIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP-------PQVVFLLVSHAAD  154 (325)
T ss_pred             H-HHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc-------CCCEEEEEeCChH
Confidence            1 11222111122456999999999999999999999999975       4567888876543

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=98.78  E-value=3.2e-08  Score=92.93  Aligned_cols=114  Identities=11%  Similarity=0.115  Sum_probs=68.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHH----HHHHHHHHhCCCeEEEE
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT----NWIISNVTACDRAIFIF  184 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~----~~~~~~l~~~~~~vlil  184 (247)
                      .++|+||+|+|||++++++++.+..   ......++.+++..+.       ..+...+.    ..+...+.  ...+|+|
T Consensus       150 ~l~l~G~~G~GKThL~~ai~~~~~~---~~~~~~v~yi~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~dlLii  217 (450)
T PRK00149        150 PLFIYGGVGLGKTHLLHAIGNYILE---KNPNAKVVYVTSEKFT-------NDFVNALRNNTMEEFKEKYR--SVDVLLI  217 (450)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHH---hCCCCeEEEEEHHHHH-------HHHHHHHHcCcHHHHHHHHh--cCCEEEE
Confidence            4799999999999999999999765   3223344555544321       11111111    12223333  3479999


Q ss_pred             eCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHH---HHHHHHHHcC
Q psy1694         185 DEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM---NTFLELRKSG  240 (247)
Q Consensus       185 DEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~---~~~~~~~~~g  240 (247)
                      ||++.+..  ..+..+...++....      .+..+|+|||..++.+.   +.+...+..|
T Consensus       218 DDi~~l~~~~~~~~~l~~~~n~l~~------~~~~iiits~~~p~~l~~l~~~l~SRl~~g  272 (450)
T PRK00149        218 DDIQFLAGKERTQEEFFHTFNALHE------AGKQIVLTSDRPPKELPGLEERLRSRFEWG  272 (450)
T ss_pred             ehhhhhcCCHHHHHHHHHHHHHHHH------CCCcEEEECCCCHHHHHHHHHHHHhHhcCC
Confidence            99998854  356666666554210      12347889998887754   4444444433

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=98.77  E-value=7.4e-09  Score=100.16  Aligned_cols=110  Identities=14%  Similarity=0.133  Sum_probs=70.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHH-H---HHHHHHHhCCCeEEEE
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT-N---WIISNVTACDRAIFIF  184 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~-~---~~~~~l~~~~~~vlil  184 (247)
                      .++|.|++|||||++|+.+++.+-.      ..||+.+..+.......+.+.-+ ..+. +   .-.+.+..+.++++++
T Consensus        18 ~vLl~G~~GtgKs~lar~l~~~~~~------~~pfv~i~~~~t~d~L~G~idl~-~~~~~g~~~~~~G~L~~A~~GvL~l   90 (589)
T TIGR02031        18 GVAIRARAGTGKTALARALAEILPP------IMPFVELPLGVTEDRLIGGIDVE-ESLAGGQRVTQPGLLDEAPRGVLYV   90 (589)
T ss_pred             eEEEEcCCCcHHHHHHHHHHHhCCc------CCCeEecCcccchhhcccchhhh-hhhhcCcccCCCCCeeeCCCCcEec
Confidence            4899999999999999999886322      24788776421111011111100 0000 0   1123455677899999


Q ss_pred             eCCCCCChhhHHHHHhhcccCcccc---cccC---CceEEEEEeCCC
Q psy1694         185 DEVDKFPKGLLDVIIPFIDHHAVYN---QISF---QNTIFLFLSNSG  225 (247)
Q Consensus       185 DEiek~~~~~~~~Ll~~Le~~~~~~---~~~~---~~~ifI~tSN~g  225 (247)
                      ||++++++.+|+.|+.+|+++.++.   +...   .+..+|.|+|..
T Consensus        91 DEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~  137 (589)
T TIGR02031        91 DMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPA  137 (589)
T ss_pred             cchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCc
Confidence            9999999999999999999986321   2211   256788888864

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=98.77  E-value=6.2e-08  Score=85.77  Aligned_cols=124  Identities=15%  Similarity=0.183  Sum_probs=77.3

Q ss_pred             ChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcc------eeee---ccccc
Q psy1694          82 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRF------VHKF---NSRIH  152 (247)
Q Consensus        82 Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~------v~~~---~~~l~  152 (247)
                      .|+.+++.+.+++.+..       -|-.++|+||  +||+.+|+.+|+.+++....+ ..++      ..+.   .+.+.
T Consensus         6 ~q~~~~~~L~~~~~~~r-------l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~-~~~Cg~C~~C~~i~~~~HPD~~   75 (290)
T PRK07276          6 KQPKVFQRFQTILEQDR-------LNHAYLFSGD--FASFEMALFLAQSLFCEQKEG-VLPCGHCRSCRLIEQGEFSDVT   75 (290)
T ss_pred             HHHHHHHHHHHHHHcCC-------cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHhcCCCCCee
Confidence            46677777777666422       3336899996  689999999999998721110 1111      1111   12221


Q ss_pred             C--CCCChHHHHHHHHHHHHHHHHH----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         153 F--PNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       153 ~--~~~~~v~~~~~~l~~~~~~~l~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                      .  |....++  .+++.... ..+.    ..++.|+|||++|+|.+...|+||+.|||++       .+++||++|+..
T Consensus        76 ~i~p~~~~I~--idqIR~l~-~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp-------~~t~~iL~t~~~  144 (290)
T PRK07276         76 VIEPQGQVIK--TDTIRELV-KNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQ-------SEIYIFLLTNDE  144 (290)
T ss_pred             eecCCCCcCC--HHHHHHHH-HHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCC-------CCeEEEEEECCh
Confidence            1  1111111  11222222 2222    2456999999999999999999999999987       788999998764

>PRK09183 transposase/IS protein; Provisional

Probab=98.76  E-value=2.4e-08  Score=87.21  Aligned_cols=106  Identities=16%  Similarity=0.176  Sum_probs=64.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHH-HHHHHHHHH--hCCCeEEEEe
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQL-TNWIISNVT--ACDRAIFIFD  185 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l-~~~~~~~l~--~~~~~vlilD  185 (247)
                      +++|+||||||||++|.+++..+..   .|...-|  +.+.++       ...+.... .+.+...+.  .....+++||
T Consensus       104 ~v~l~Gp~GtGKThLa~al~~~a~~---~G~~v~~--~~~~~l-------~~~l~~a~~~~~~~~~~~~~~~~~dlLiiD  171 (259)
T PRK09183        104 NIVLLGPSGVGKTHLAIALGYEAVR---AGIKVRF--TTAADL-------LLQLSTAQRQGRYKTTLQRGVMAPRLLIID  171 (259)
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEE--EeHHHH-------HHHHHHHHHCCcHHHHHHHHhcCCCEEEEc
Confidence            6889999999999999999887554   4322222  222222       11111100 001111121  1234799999


Q ss_pred             CCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHH
Q psy1694         186 EVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF  233 (247)
Q Consensus       186 Eiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~  233 (247)
                      |++..+.  ...+.|.++++.+.       .+..+|+|||.+.++..+..
T Consensus       172 dlg~~~~~~~~~~~lf~li~~r~-------~~~s~iiTsn~~~~~w~~~~  214 (259)
T PRK09183        172 EIGYLPFSQEEANLFFQVIAKRY-------EKGSMILTSNLPFGQWDQTF  214 (259)
T ss_pred             ccccCCCChHHHHHHHHHHHHHH-------hcCcEEEecCCCHHHHHHHh
Confidence            9998654  55667888887632       23348999999988876554

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.76  E-value=6.6e-08  Score=90.57  Aligned_cols=135  Identities=11%  Similarity=0.100  Sum_probs=74.6

Q ss_pred             HHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694          76 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN  155 (247)
Q Consensus        76 L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~  155 (247)
                      ++..+.|.+...  ...++..+..++.   .+..++|+||+|+|||++++++++.+..   .......+.+++.++    
T Consensus       104 FdnFv~g~~n~~--a~~~~~~~~~~~~---~~n~l~lyG~~G~GKTHLl~ai~~~l~~---~~~~~~v~yi~~~~f----  171 (440)
T PRK14088        104 FENFVVGPGNSF--AYHAALEVAKNPG---RYNPLFIYGGVGLGKTHLLQSIGNYVVQ---NEPDLRVMYITSEKF----  171 (440)
T ss_pred             ccccccCCchHH--HHHHHHHHHhCcC---CCCeEEEEcCCCCcHHHHHHHHHHHHHH---hCCCCeEEEEEHHHH----
Confidence            444577754332  2233334443332   2334799999999999999999998755   332334455544332    


Q ss_pred             CChHHHHHHHHH----HHHHHHHHhCCCeEEEEeCCCCCC--hhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHH
Q psy1694         156 ENHVSLYRLQLT----NWIISNVTACDRAIFIFDEVDKFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEI  229 (247)
Q Consensus       156 ~~~v~~~~~~l~----~~~~~~l~~~~~~vlilDEiek~~--~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i  229 (247)
                         ...+...+.    ..+...+. ....+++|||++.+.  ...+..+...+.+..     + .+..+|+|||..++.+
T Consensus       172 ---~~~~~~~~~~~~~~~f~~~~~-~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~-----~-~~k~iIitsd~~p~~l  241 (440)
T PRK14088        172 ---LNDLVDSMKEGKLNEFREKYR-KKVDVLLIDDVQFLIGKTGVQTELFHTFNELH-----D-SGKQIVICSDREPQKL  241 (440)
T ss_pred             ---HHHHHHHHhcccHHHHHHHHH-hcCCEEEEechhhhcCcHHHHHHHHHHHHHHH-----H-cCCeEEEECCCCHHHH
Confidence               111111111    11212221 135799999999874  335556666554421     1 2236788888888876


Q ss_pred             HHH
Q psy1694         230 MNT  232 (247)
Q Consensus       230 ~~~  232 (247)
                      ...
T Consensus       242 ~~l  244 (440)
T PRK14088        242 SEF  244 (440)
T ss_pred             HHH
Confidence            654

>KOG0652|consensus

Probab=98.76  E-value=7.3e-08  Score=83.37  Aligned_cols=128  Identities=13%  Similarity=0.221  Sum_probs=76.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .+-|-+..++.+.+++---+..+.     .-.-|..++++||||||||++||+.|.....        .|...       
T Consensus       172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a--------TFLKL-------  236 (424)
T KOG0652|consen  172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA--------TFLKL-------  236 (424)
T ss_pred             ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc--------hHHHh-------
Confidence            367788888888888742111110     0234557899999999999999999776322        23222       


Q ss_pred             CCCChHHHHHHHHHHHHHHHHH---hCCCeEEEEeCCCCCC-----------hhhHHHHHhhcccCcccccc-cCCceEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNVT---ACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQI-SFQNTIF  218 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~---~~~~~vlilDEiek~~-----------~~~~~~Ll~~Le~~~~~~~~-~~~~~if  218 (247)
                      ..|..+..|-+.=...++.++.   .....++|+||+|.+.           .++|..++.+|..   .++. ...+.-+
T Consensus       237 AgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQ---LDGFss~~~vKv  313 (424)
T KOG0652|consen  237 AGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ---LDGFSSDDRVKV  313 (424)
T ss_pred             cchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHh---hcCCCCccceEE
Confidence            2233344443322223333333   2334899999998763           3688888887754   2221 2235557


Q ss_pred             EEEeCC
Q psy1694         219 LFLSNS  224 (247)
Q Consensus       219 I~tSN~  224 (247)
                      |..+|.
T Consensus       314 iAATNR  319 (424)
T KOG0652|consen  314 IAATNR  319 (424)
T ss_pred             Eeeccc
Confidence            777775

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.75  E-value=3.9e-08  Score=76.02  Aligned_cols=106  Identities=13%  Similarity=0.257  Sum_probs=65.0

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc--------------cCCCCChHHHHHHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI--------------HFPNENHVSLYRLQLTNWIISN  173 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l--------------~~~~~~~v~~~~~~l~~~~~~~  173 (247)
                      ..++++||+|+|||++++.+++.+..........+.+.++++..              ..+...  ......+.+.+...
T Consensus         5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~~~   82 (131)
T PF13401_consen    5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLIDA   82 (131)
T ss_dssp             --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHHHH
T ss_pred             cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHHHH
Confidence            36889999999999999999988643100000234555554222              111111  01122334556666


Q ss_pred             HHhCCCeEEEEeCCCCC-ChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         174 VTACDRAIFIFDEVDKF-PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       174 l~~~~~~vlilDEiek~-~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      +.+....+++|||+|.+ +...++.|...+++         .+.-+|++.+.
T Consensus        83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~---------~~~~vvl~G~~  125 (131)
T PF13401_consen   83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLNE---------SNIKVVLVGTP  125 (131)
T ss_dssp             HHHCTEEEEEEETTHHHHTHHHHHHHHHHTCS---------CBEEEEEEESS
T ss_pred             HHhcCCeEEEEeChHhcCCHHHHHHHHHHHhC---------CCCeEEEEECh
Confidence            67766679999999999 99999999888874         44556666543

>KOG0990|consensus

Probab=98.72  E-value=6.8e-09  Score=91.63  Aligned_cols=127  Identities=19%  Similarity=0.102  Sum_probs=81.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .+++|++.+..+.+.    ...   ++-| .+||+||||||||.+..+.|+.+++.  .+..+.....+.+.-.+.....
T Consensus        42 dv~~~~ei~st~~~~----~~~---~~lP-h~L~YgPPGtGktsti~a~a~~ly~~--~~~~~m~lelnaSd~rgid~vr  111 (360)
T KOG0990|consen   42 IVIKQEPIWSTENRY----SGM---PGLP-HLLFYGPPGTGKTSTILANARDFYSP--HPTTSMLLELNASDDRGIDPVR  111 (360)
T ss_pred             hHhcCCchhhHHHHh----ccC---CCCC-cccccCCCCCCCCCchhhhhhhhcCC--CCchhHHHHhhccCccCCcchH
Confidence            377887777666544    111   3344 68999999999999999999998872  2222223333333322222211


Q ss_pred             HHHHHHHHHH--HHH--HHHH-hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694         159 VSLYRLQLTN--WII--SNVT-ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  227 (247)
Q Consensus       159 v~~~~~~l~~--~~~--~~l~-~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~  227 (247)
                           ++...  ...  ..++ .+...++|+||+|.|..+.|++|.++++...       .|+-|+..+|....
T Consensus       112 -----~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t-------~n~rF~ii~n~~~k  173 (360)
T KOG0990|consen  112 -----QQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYT-------ANTRFATISNPPQK  173 (360)
T ss_pred             -----HHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhc-------cceEEEEeccChhh
Confidence                 11111  111  1111 2456899999999999999999999988865       56678888887544

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=3.5e-08  Score=94.42  Aligned_cols=141  Identities=16%  Similarity=0.228  Sum_probs=83.2

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc-
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH-  152 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~-  152 (247)
                      .+-|.+++++.+.+.+. ++.++.     ...-|..+++.||||||||++|+++|...        ..||+.+.-|++. 
T Consensus       151 DVAG~dEakeel~EiVd-fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA--------~VPFf~iSGS~FVe  221 (596)
T COG0465         151 DVAGVDEAKEELSELVD-FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--------GVPFFSISGSDFVE  221 (596)
T ss_pred             hhcCcHHHHHHHHHHHH-HHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc--------CCCceeccchhhhh
Confidence            48899999998887764 222222     13467889999999999999999997762        2355555433221 


Q ss_pred             ---CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCc
Q psy1694         153 ---FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQN  215 (247)
Q Consensus       153 ---~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~  215 (247)
                         +...+       ...+.+.++-+++| +++||||+|....              ..++.|+.-||...     .-.-
T Consensus       222 mfVGvGAs-------RVRdLF~qAkk~aP-~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~-----~~~g  288 (596)
T COG0465         222 MFVGVGAS-------RVRDLFEQAKKNAP-CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-----GNEG  288 (596)
T ss_pred             hhcCCCcH-------HHHHHHHHhhccCC-CeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC-----CCCc
Confidence               11111       11233333334444 8999999988743              25777777777532     1123


Q ss_pred             eEEEEEeCCChHHHHHHHHHHHHcCccccc
Q psy1694         216 TIFLFLSNSGGTEIMNTFLELRKSGERYIT  245 (247)
Q Consensus       216 ~ifI~tSN~g~~~i~~~~~~~~~~g~~Re~  245 (247)
                      .|+|..||..  ++-.  -.+++-|||...
T Consensus       289 viviaaTNRp--dVlD--~ALlRpgRFDRq  314 (596)
T COG0465         289 VIVIAATNRP--DVLD--PALLRPGRFDRQ  314 (596)
T ss_pred             eEEEecCCCc--ccch--HhhcCCCCccee
Confidence            4455555552  2221  245566666543

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=98.72  E-value=6.8e-08  Score=94.49  Aligned_cols=130  Identities=16%  Similarity=0.195  Sum_probs=77.4

Q ss_pred             hcCChHHHHHHHHHHHHHhhh----cccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          79 HVHGQELAISHICGALKNHFQ----NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~----~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      .+.|.+.+.+.+.+.+.-...    .......|..++|+||||||||++|++++..+.        .+|+.++++.+...
T Consensus       153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~--------~~f~~is~~~~~~~  224 (644)
T PRK10733        153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--------VPFFTISGSDFVEM  224 (644)
T ss_pred             HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--------CCEEEEehHHhHHh
Confidence            378888888877766543110    000012345699999999999999999988742        37777776543211


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCceEEEE
Q psy1694         155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFLF  220 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~  220 (247)
                         .++.-...+...+. .......+++||||+|.+..              ..++.++..|+...     +....++|+
T Consensus       225 ---~~g~~~~~~~~~f~-~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~-----~~~~vivIa  295 (644)
T PRK10733        225 ---FVGVGASRVRDMFE-QAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----GNEGIIVIA  295 (644)
T ss_pred             ---hhcccHHHHHHHHH-HHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhccc-----CCCCeeEEE
Confidence               11100111222222 22334558999999998832              24566666666421     124678889


Q ss_pred             EeCCC
Q psy1694         221 LSNSG  225 (247)
Q Consensus       221 tSN~g  225 (247)
                      +||..
T Consensus       296 aTN~p  300 (644)
T PRK10733        296 ATNRP  300 (644)
T ss_pred             ecCCh
Confidence            99863

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.70  E-value=5.2e-08  Score=83.04  Aligned_cols=113  Identities=13%  Similarity=0.164  Sum_probs=69.3

Q ss_pred             EEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHH----HHHHHHHHhCCCeEEEEe
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT----NWIISNVTACDRAIFIFD  185 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~----~~~~~~l~~~~~~vlilD  185 (247)
                      ++++||+|+|||++.+++++.+..   .......++++..++       ...+...+.    ..+...+  ....+++||
T Consensus        37 l~l~G~~G~GKTHLL~Ai~~~~~~---~~~~~~v~y~~~~~f-------~~~~~~~~~~~~~~~~~~~~--~~~DlL~iD  104 (219)
T PF00308_consen   37 LFLYGPSGLGKTHLLQAIANEAQK---QHPGKRVVYLSAEEF-------IREFADALRDGEIEEFKDRL--RSADLLIID  104 (219)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHH---HCTTS-EEEEEHHHH-------HHHHHHHHHTTSHHHHHHHH--CTSSEEEEE
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHh---ccccccceeecHHHH-------HHHHHHHHHcccchhhhhhh--hcCCEEEEe
Confidence            688999999999999999998654   222334455544332       111222111    1122222  345899999


Q ss_pred             CCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHH---HHHHHHHHcC
Q psy1694         186 EVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM---NTFLELRKSG  240 (247)
Q Consensus       186 Eiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~---~~~~~~~~~g  240 (247)
                      +++.+..  ..|..|..+++....      ++..+|+||+..++++.   ..+...+..|
T Consensus       105 Di~~l~~~~~~q~~lf~l~n~~~~------~~k~li~ts~~~P~~l~~~~~~L~SRl~~G  158 (219)
T PF00308_consen  105 DIQFLAGKQRTQEELFHLFNRLIE------SGKQLILTSDRPPSELSGLLPDLRSRLSWG  158 (219)
T ss_dssp             TGGGGTTHHHHHHHHHHHHHHHHH------TTSEEEEEESS-TTTTTTS-HHHHHHHHCS
T ss_pred             cchhhcCchHHHHHHHHHHHHHHh------hCCeEEEEeCCCCccccccChhhhhhHhhc
Confidence            9999975  457888888776321      34468999988877653   4444444444

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.69  E-value=1.7e-07  Score=87.27  Aligned_cols=117  Identities=21%  Similarity=0.310  Sum_probs=66.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCC--Ccceeee--cc--c-ccCCCCChHHHHH---HHHHHHHHHHHHh-C
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT--SRFVHKF--NS--R-IHFPNENHVSLYR---LQLTNWIISNVTA-C  177 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~--~~~v~~~--~~--~-l~~~~~~~v~~~~---~~l~~~~~~~l~~-~  177 (247)
                      +++|+||||||||++|+.+|+.+..   ....  ..+|.+.  .+  . +.+..+..++ |.   +.+.+....+... .
T Consensus       196 ~iil~GppGtGKT~lA~~la~~l~~---~~~~~~v~~VtFHpsySYeDFI~G~rP~~vg-y~~~~G~f~~~~~~A~~~p~  271 (459)
T PRK11331        196 NIILQGPPGVGKTFVARRLAYLLTG---EKAPQRVNMVQFHQSYSYEDFIQGYRPNGVG-FRRKDGIFYNFCQQAKEQPE  271 (459)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhcC---CcccceeeEEeecccccHHHHhcccCCCCCC-eEecCchHHHHHHHHHhccc
Confidence            6789999999999999999998654   2111  1112221  00  1 1111122211 21   1111222222111 2


Q ss_pred             CCeEEEEeCCCCCCh-hhHHHHHhhcccCcc--------c----cc---ccCCceEEEEEeCCChHHH
Q psy1694         178 DRAIFIFDEVDKFPK-GLLDVIIPFIDHHAV--------Y----NQ---ISFQNTIFLFLSNSGGTEI  229 (247)
Q Consensus       178 ~~~vlilDEiek~~~-~~~~~Ll~~Le~~~~--------~----~~---~~~~~~ifI~tSN~g~~~i  229 (247)
                      ...++||||+++.+. .++..++.+||....        .    +.   .--.|..+|.|.|.....+
T Consensus       272 ~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~  339 (459)
T PRK11331        272 KKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSL  339 (459)
T ss_pred             CCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccch
Confidence            358999999999996 468888888886310        0    00   1225888999999887543

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=2.2e-08  Score=92.73  Aligned_cols=132  Identities=16%  Similarity=0.206  Sum_probs=78.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCC---------CCCccee----
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK---------GTSRFVH----  145 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g---------~~~~~v~----  145 (247)
                      .|+||+.|++.+.-+..   ..+       ++++.||||||||++|+.+...|-......         ....+..    
T Consensus       180 DV~GQ~~AKrAleiAAA---GgH-------nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~  249 (490)
T COG0606         180 DVKGQEQAKRALEIAAA---GGH-------NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPL  249 (490)
T ss_pred             hhcCcHHHHHHHHHHHh---cCC-------cEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCcc
Confidence            49999999987765443   233       589999999999999999866643200000         0000000    


Q ss_pred             eecccccCCCCC-----hHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc-----ccC-C
Q psy1694         146 KFNSRIHFPNEN-----HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ-----ISF-Q  214 (247)
Q Consensus       146 ~~~~~l~~~~~~-----~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~-----~~~-~  214 (247)
                      ....-+-.|+.+     .++.+    ..-..+.+..+.+||+||||+-.....+++.|.+-||++.+...     +.| .
T Consensus       250 ~~~rPFr~PHHsaS~~aLvGGG----~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa  325 (490)
T COG0606         250 KIHRPFRAPHHSASLAALVGGG----GVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPA  325 (490)
T ss_pred             ceeCCccCCCccchHHHHhCCC----CCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEee
Confidence            000001111111     11111    00112445667789999999999999999999999999976433     222 2


Q ss_pred             ceEEEEEeCC
Q psy1694         215 NTIFLFLSNS  224 (247)
Q Consensus       215 ~~ifI~tSN~  224 (247)
                      +..+++.+|.
T Consensus       326 ~Fqlv~AmNp  335 (490)
T COG0606         326 RFQLVAAMNP  335 (490)
T ss_pred             eeEEhhhcCC
Confidence            5556666663

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=98.69  E-value=3.1e-08  Score=96.14  Aligned_cols=51  Identities=31%  Similarity=0.388  Sum_probs=41.3

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694          73 EEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus        73 ~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+.+.+.++||+.+.+.+..++...    .      .++|+||||||||++++++++.+..
T Consensus        13 ~~~~~~~viG~~~a~~~l~~a~~~~----~------~~ll~G~pG~GKT~la~~la~~l~~   63 (608)
T TIGR00764        13 PERLIDQVIGQEEAVEIIKKAAKQK----R------NVLLIGEPGVGKSMLAKAMAELLPD   63 (608)
T ss_pred             chhhHhhccCHHHHHHHHHHHHHcC----C------CEEEECCCCCCHHHHHHHHHHHcCc
Confidence            3456778999999998887777632    1      5679999999999999999998754

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.68  E-value=5.7e-08  Score=92.04  Aligned_cols=113  Identities=15%  Similarity=0.172  Sum_probs=69.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee-----ccc------c---cCCCCChHHHHHHHHHH---HHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-----NSR------I---HFPNENHVSLYRLQLTN---WII  171 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~-----~~~------l---~~~~~~~v~~~~~~l~~---~~~  171 (247)
                      .+++.||+|+|||++++.++..+...  .+  ...+...     ++.      +   .|-.+..-.+....+.+   .-.
T Consensus       212 ~llliG~~GsGKTtLak~L~gllpp~--~g--~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~p  287 (506)
T PRK09862        212 NLLLIGPPGTGKTMLASRINGLLPDL--SN--EEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGP  287 (506)
T ss_pred             EEEEECCCCCcHHHHHHHHhccCCCC--CC--cEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehh
Confidence            68999999999999999997764321  00  0001000     000      0   00001000001111111   123


Q ss_pred             HHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc---cc---cCCceEEEEEeCCC
Q psy1694         172 SNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN---QI---SFQNTIFLFLSNSG  225 (247)
Q Consensus       172 ~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~---~~---~~~~~ifI~tSN~g  225 (247)
                      +.+..+.++++|+||++.+++.+|+.|++.||++.++.   +.   --.+..+|.|+|.-
T Consensus       288 G~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~  347 (506)
T PRK09862        288 GEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPS  347 (506)
T ss_pred             hHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCc
Confidence            67888999999999999999999999999999987531   11   22467799999964

>PRK05642 DNA replication initiation factor; Validated

Probab=98.67  E-value=1.2e-07  Score=81.63  Aligned_cols=97  Identities=11%  Similarity=0.123  Sum_probs=62.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  188 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie  188 (247)
                      .++|+||+|+|||++++++++.+..   .+.  ..+.+...++..           . ...+.+.+..+  .++++|+++
T Consensus        47 ~l~l~G~~G~GKTHLl~a~~~~~~~---~~~--~v~y~~~~~~~~-----------~-~~~~~~~~~~~--d~LiiDDi~  107 (234)
T PRK05642         47 LIYLWGKDGVGRSHLLQAACLRFEQ---RGE--PAVYLPLAELLD-----------R-GPELLDNLEQY--ELVCLDDLD  107 (234)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHh---CCC--cEEEeeHHHHHh-----------h-hHHHHHhhhhC--CEEEEechh
Confidence            5789999999999999999988654   332  334444333211           0 11222334444  699999999


Q ss_pred             CCC--hhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHH
Q psy1694         189 KFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM  230 (247)
Q Consensus       189 k~~--~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~  230 (247)
                      ..+  +..+..|...++...      .++..+|+|||..+.++.
T Consensus       108 ~~~~~~~~~~~Lf~l~n~~~------~~g~~ilits~~~p~~l~  145 (234)
T PRK05642        108 VIAGKADWEEALFHLFNRLR------DSGRRLLLAASKSPRELP  145 (234)
T ss_pred             hhcCChHHHHHHHHHHHHHH------hcCCEEEEeCCCCHHHcC
Confidence            875  355666777776522      134468889988877654

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=98.67  E-value=2.1e-07  Score=82.86  Aligned_cols=101  Identities=12%  Similarity=0.173  Sum_probs=67.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCC---CCc--ceeeecccccCCCCChHHHHHHHHHHHHHHHHH-----hCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKG---TSR--FVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT-----ACD  178 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~---~~~--~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~-----~~~  178 (247)
                      +.+|+|+.|.||+.+|+.+++.+++.+..+.   ..|  +..+     + +....++  .+++.... +.+.     ..+
T Consensus        20 aYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~-----d-~~g~~i~--vd~Ir~l~-~~~~~~~~~~~~   90 (299)
T PRK07132         20 SFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILF-----D-IFDKDLS--KSEFLSAI-NKLYFSSFVQSQ   90 (299)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEe-----c-cCCCcCC--HHHHHHHH-HHhccCCcccCC
Confidence            6899999999999999999999866211111   112  1111     1 0011111  12223222 2222     136


Q ss_pred             CeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         179 RAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       179 ~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                      +.|+++|++|+|....+++|++.||+++       .+++||++|+..
T Consensus        91 ~KvvII~~~e~m~~~a~NaLLK~LEEPp-------~~t~~il~~~~~  130 (299)
T PRK07132         91 KKILIIKNIEKTSNSLLNALLKTIEEPP-------KDTYFLLTTKNI  130 (299)
T ss_pred             ceEEEEecccccCHHHHHHHHHHhhCCC-------CCeEEEEEeCCh
Confidence            6999999999999999999999999987       889999988743

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=98.64  E-value=1.4e-07  Score=90.77  Aligned_cols=104  Identities=10%  Similarity=0.095  Sum_probs=62.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHH----HHHHHHHHhCCCeEEEE
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT----NWIISNVTACDRAIFIF  184 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~----~~~~~~l~~~~~~vlil  184 (247)
                      .++|+|++|+|||+++++|++.+..   .......+++.+.++.       ..+...+.    ..+...+..  .++|+|
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~---~~~g~~V~Yitaeef~-------~el~~al~~~~~~~f~~~y~~--~DLLlI  383 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARR---LYPGTRVRYVSSEEFT-------NEFINSIRDGKGDSFRRRYRE--MDILLV  383 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHH---hCCCCeEEEeeHHHHH-------HHHHHHHHhccHHHHHHHhhc--CCEEEE
Confidence            3799999999999999999998653   1111233444443321       11211111    122233333  389999


Q ss_pred             eCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHH
Q psy1694         185 DEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM  230 (247)
Q Consensus       185 DEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~  230 (247)
                      ||++.+..  ..+..|..+++...     + ++.-+|+|||...++++
T Consensus       384 DDIq~l~gke~tqeeLF~l~N~l~-----e-~gk~IIITSd~~P~eL~  425 (617)
T PRK14086        384 DDIQFLEDKESTQEEFFHTFNTLH-----N-ANKQIVLSSDRPPKQLV  425 (617)
T ss_pred             ehhccccCCHHHHHHHHHHHHHHH-----h-cCCCEEEecCCChHhhh
Confidence            99999854  34566666666522     1 22347789999888765

>KOG0732|consensus

Probab=98.63  E-value=1.5e-07  Score=94.40  Aligned_cols=135  Identities=19%  Similarity=0.219  Sum_probs=80.8

Q ss_pred             cCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          80 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      +-|-+..++.+.+.+-.-+..+.     ....|..++||||||||||++|+++|.++-.   ..   .-+.+++..-..-
T Consensus       267 vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~---~~---~kisffmrkgaD~  340 (1080)
T KOG0732|consen  267 VGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSR---GN---RKISFFMRKGADC  340 (1080)
T ss_pred             cccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcc---cc---cccchhhhcCchh
Confidence            56677777777766643211111     1334667999999999999999999999543   11   1122222111111


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694         155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  223 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN  223 (247)
                      ....++.-..++.-.. +..+++..+++||||||-+.|           .+...|+.+|+.-.     ...+.++|.++|
T Consensus       341 lskwvgEaERqlrllF-eeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGld-----sRgqVvvigATn  414 (1080)
T KOG0732|consen  341 LSKWVGEAERQLRLLF-EEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLD-----SRGQVVVIGATN  414 (1080)
T ss_pred             hccccCcHHHHHHHHH-HHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCC-----CCCceEEEcccC
Confidence            1233343333333333 334556679999999996544           56778888887522     235788888888


Q ss_pred             CCh
Q psy1694         224 SGG  226 (247)
Q Consensus       224 ~g~  226 (247)
                      ...
T Consensus       415 Rpd  417 (1080)
T KOG0732|consen  415 RPD  417 (1080)
T ss_pred             Ccc
Confidence            743

>KOG0737|consensus

Probab=98.60  E-value=2.4e-07  Score=83.26  Aligned_cols=98  Identities=21%  Similarity=0.277  Sum_probs=59.3

Q ss_pred             cCChHHHHHHHHHHHHHhh-------hcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc
Q psy1694          80 VHGQELAISHICGALKNHF-------QNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH  152 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~-------~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~  152 (247)
                      +-|-+..++.+.+.+.--+       ..+- -+.|..+|++||||||||.+|+++|+..        ..+|+.+.++.+.
T Consensus        94 IggLe~v~~~L~e~VilPlr~pelF~~g~L-l~p~kGiLL~GPpG~GKTmlAKA~Akea--------ga~fInv~~s~lt  164 (386)
T KOG0737|consen   94 IGGLEEVKDALQELVILPLRRPELFAKGKL-LRPPKGILLYGPPGTGKTMLAKAIAKEA--------GANFINVSVSNLT  164 (386)
T ss_pred             ccchHHHHHHHHHHHhhcccchhhhccccc-ccCCccceecCCCCchHHHHHHHHHHHc--------CCCcceeeccccc
Confidence            4556666666665553211       1111 3456789999999999999999998873        2478888877662


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q psy1694         153 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF  190 (247)
Q Consensus       153 ~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~  190 (247)
                      .   ..+++-+ .+-..+...-.+-..+++|+||+|.+
T Consensus       165 ~---KWfgE~e-Klv~AvFslAsKl~P~iIFIDEvds~  198 (386)
T KOG0737|consen  165 S---KWFGEAQ-KLVKAVFSLASKLQPSIIFIDEVDSF  198 (386)
T ss_pred             h---hhHHHHH-HHHHHHHhhhhhcCcceeehhhHHHH
Confidence            2   2222111 11222222222334589999999876

>KOG0741|consensus

Probab=98.58  E-value=6.5e-08  Score=90.45  Aligned_cols=107  Identities=21%  Similarity=0.265  Sum_probs=62.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHH---HHHhCC----CeE
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIIS---NVTACD----RAI  181 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~---~l~~~~----~~v  181 (247)
                      .++|+||||||||++||.|.+.|..+      .|- -+|-+++   ...++++.++.+.+.+..   ..+++.    --+
T Consensus       258 GiLLyGPPGTGKTLiARqIGkMLNAr------ePK-IVNGPeI---L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHI  327 (744)
T KOG0741|consen  258 GILLYGPPGTGKTLIARQIGKMLNAR------EPK-IVNGPEI---LNKYVGESEENVRKLFADAEEEQRRLGANSGLHI  327 (744)
T ss_pred             eEEEECCCCCChhHHHHHHHHHhcCC------CCc-ccCcHHH---HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceE
Confidence            58999999999999999999997652      121 1222221   112333223222222221   112222    189


Q ss_pred             EEEeCCCCC-------------ChhhHHHHHhhcccCcccccc-cCCceEEEEEeCCChHHHHHH
Q psy1694         182 FIFDEVDKF-------------PKGLLDVIIPFIDHHAVYNQI-SFQNTIFLFLSNSGGTEIMNT  232 (247)
Q Consensus       182 lilDEiek~-------------~~~~~~~Ll~~Le~~~~~~~~-~~~~~ifI~tSN~g~~~i~~~  232 (247)
                      +||||+|.+             +..+.+.||.-||.      | ...|..+|..||. .+-|.+.
T Consensus       328 IIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDG------VeqLNNILVIGMTNR-~DlIDEA  385 (744)
T KOG0741|consen  328 IIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDG------VEQLNNILVIGMTNR-KDLIDEA  385 (744)
T ss_pred             EEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhccc------HHhhhcEEEEeccCc-hhhHHHH
Confidence            999999764             33567777766654      3 4568888988887 3334433

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=98.58  E-value=5e-07  Score=84.75  Aligned_cols=103  Identities=9%  Similarity=0.148  Sum_probs=63.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHH----HHHHHHHHhCCCeEEEE
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT----NWIISNVTACDRAIFIF  184 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~----~~~~~~l~~~~~~vlil  184 (247)
                      .++|+||+|+|||++++++++.+..   .+  ..++.+....+       ...+...+.    ..+....  ...++++|
T Consensus       143 pl~L~G~~G~GKTHLl~Ai~~~l~~---~~--~~v~yi~~~~f-------~~~~~~~l~~~~~~~f~~~~--~~~dvLiI  208 (445)
T PRK12422        143 PIYLFGPEGSGKTHLMQAAVHALRE---SG--GKILYVRSELF-------TEHLVSAIRSGEMQRFRQFY--RNVDALFI  208 (445)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHH---cC--CCEEEeeHHHH-------HHHHHHHHhcchHHHHHHHc--ccCCEEEE
Confidence            4789999999999999999999765   33  23344433221       111111111    1122222  23479999


Q ss_pred             eCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHH
Q psy1694         185 DEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN  231 (247)
Q Consensus       185 DEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~  231 (247)
                      ||++.+..  ..+..+...++....      .+..+|+|||..+.++..
T Consensus       209 DDiq~l~~k~~~qeelf~l~N~l~~------~~k~IIlts~~~p~~l~~  251 (445)
T PRK12422        209 EDIEVFSGKGATQEEFFHTFNSLHT------EGKLIVISSTCAPQDLKA  251 (445)
T ss_pred             cchhhhcCChhhHHHHHHHHHHHHH------CCCcEEEecCCCHHHHhh
Confidence            99999864  456666666553210      234689999998887764

>KOG0730|consensus

Probab=98.57  E-value=1.9e-07  Score=89.25  Aligned_cols=146  Identities=14%  Similarity=0.140  Sum_probs=88.3

Q ss_pred             cCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          80 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      +-|....+..+...+.--+..+.     ...-|..++++||||||||.+++++|+.. +       ..+..++++++...
T Consensus       186 ~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~-~-------a~~~~i~~peli~k  257 (693)
T KOG0730|consen  186 IGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY-G-------AFLFLINGPELISK  257 (693)
T ss_pred             cchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh-C-------ceeEecccHHHHHh
Confidence            44455555555555543222221     12346679999999999999999999882 2       34566666655332


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh----------hhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      ..   ++++..+...+....+....+++++||++.+-+          .+...|+.+++.-.     .-++.|+|.++|.
T Consensus       258 ~~---gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~-----~~~~vivl~atnr  329 (693)
T KOG0730|consen  258 FP---GETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK-----PDAKVIVLAATNR  329 (693)
T ss_pred             cc---cchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc-----CcCcEEEEEecCC
Confidence            22   224444555555544455479999999999865          24555666666522     2378888888887


Q ss_pred             ChHHHHHHHHHHHHcCcccccC
Q psy1694         225 GGTEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       225 g~~~i~~~~~~~~~~g~~Re~~  246 (247)
                      . +.|...    .++|||..++
T Consensus       330 p-~sld~a----lRRgRfd~ev  346 (693)
T KOG0730|consen  330 P-DSLDPA----LRRGRFDREV  346 (693)
T ss_pred             c-cccChh----hhcCCCccee
Confidence            3 333322    2227776553

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=98.56  E-value=9.5e-08  Score=92.86  Aligned_cols=49  Identities=33%  Similarity=0.424  Sum_probs=39.5

Q ss_pred             HHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694          75 QLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus        75 ~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+-+.++||..+++.+..++...    .      .++|+||||+|||++|+++++.+..
T Consensus        28 ~~~~~vigq~~a~~~L~~~~~~~----~------~~l~~G~~G~GKttla~~l~~~l~~   76 (637)
T PRK13765         28 RLIDQVIGQEHAVEVIKKAAKQR----R------HVMMIGSPGTGKSMLAKAMAELLPK   76 (637)
T ss_pred             ccHHHcCChHHHHHHHHHHHHhC----C------eEEEECCCCCcHHHHHHHHHHHcCh
Confidence            45556999999999887766532    2      5789999999999999999998653

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=98.54  E-value=2.8e-07  Score=84.33  Aligned_cols=65  Identities=20%  Similarity=0.286  Sum_probs=51.6

Q ss_pred             HHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCc--cc-ccccC---CceEEEEEeCCChHHHHHHHHHH
Q psy1694         172 SNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA--VY-NQISF---QNTIFLFLSNSGGTEIMNTFLEL  236 (247)
Q Consensus       172 ~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~--~~-~~~~~---~~~ifI~tSN~g~~~i~~~~~~~  236 (247)
                      +.+.++.++|+++||+..++..+++.|+.+++++.  ++ +++.+   .+.++|.|.|-...+|...+++.
T Consensus       138 GlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDR  208 (423)
T COG1239         138 GLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDR  208 (423)
T ss_pred             cchhhccCCEEEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhh
Confidence            56678889999999999999999999999999973  22 34433   37889999998866777666665

>KOG0743|consensus

Probab=98.52  E-value=6.1e-07  Score=82.67  Aligned_cols=119  Identities=17%  Similarity=0.219  Sum_probs=66.9

Q ss_pred             hHHHHHHHHHHHHHhhhccc---CCCCC--eEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCC
Q psy1694          83 QELAISHICGALKNHFQNRY---HNTKA--LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  157 (247)
Q Consensus        83 q~~a~~~l~~~l~~~~~~~~---~~~kp--l~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~  157 (247)
                      .+...+.+.+-+..+..++.   ..++|  ...||+||||||||++..++|++|-=        .......++.      
T Consensus       206 d~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~y--------dIydLeLt~v------  271 (457)
T KOG0743|consen  206 DPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNY--------DIYDLELTEV------  271 (457)
T ss_pred             ChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCC--------ceEEeeeccc------
Confidence            34445555555555543321   12233  36899999999999999999998521        1222222221      


Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC------------------hhhHHHHHhhcccCcccccccCCceEEE
Q psy1694         158 HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP------------------KGLLDVIIPFIDHHAVYNQISFQNTIFL  219 (247)
Q Consensus       158 ~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~------------------~~~~~~Ll~~Le~~~~~~~~~~~~~ifI  219 (247)
                        + -...+...+   ....+.+||+|.+||-.-                  .-.+.-||.++|.=   ++.--..-|+|
T Consensus       272 --~-~n~dLr~LL---~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGl---wSscg~ERIiv  342 (457)
T KOG0743|consen  272 --K-LDSDLRHLL---LATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGL---WSSCGDERIIV  342 (457)
T ss_pred             --c-CcHHHHHHH---HhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccc---cccCCCceEEE
Confidence              1 011123222   234556999999997641                  12355677777641   11111234999


Q ss_pred             EEeCC
Q psy1694         220 FLSNS  224 (247)
Q Consensus       220 ~tSN~  224 (247)
                      ||||.
T Consensus       343 FTTNh  347 (457)
T KOG0743|consen  343 FTTNH  347 (457)
T ss_pred             EecCC
Confidence            99997

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=6.6e-07  Score=87.99  Aligned_cols=116  Identities=16%  Similarity=0.237  Sum_probs=82.4

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~  153 (247)
                      .++|.+..++++.+.+.+.-.++.        +|.|+||+|||.++..+|...-.   ...     ....+..+++.+. 
T Consensus       171 PvIGRd~EI~r~iqIL~RR~KNNP--------vLiGEpGVGKTAIvEGLA~rIv~---g~VP~~L~~~~i~sLD~g~Lv-  238 (786)
T COG0542         171 PVIGRDEEIRRTIQILSRRTKNNP--------VLVGEPGVGKTAIVEGLAQRIVN---GDVPESLKDKRIYSLDLGSLV-  238 (786)
T ss_pred             CCcChHHHHHHHHHHHhccCCCCC--------eEecCCCCCHHHHHHHHHHHHhc---CCCCHHHcCCEEEEecHHHHh-
Confidence            499999999999998887654444        78999999999999999998765   222     2233444444432 


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC---------ChhhHHHHHhhcccCcc
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAV  207 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~---------~~~~~~~Ll~~Le~~~~  207 (247)
                      .-.++-+.|++.++..+ ..++..+.-++||||++.+         ..+.-|.|+|.|..+.+
T Consensus       239 AGakyRGeFEeRlk~vl-~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL  300 (786)
T COG0542         239 AGAKYRGEFEERLKAVL-KEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGEL  300 (786)
T ss_pred             ccccccCcHHHHHHHHH-HHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCe
Confidence            12334455666666555 3456666899999999765         24588999999999863

>PF13173 AAA_14: AAA domain

Probab=98.52  E-value=6.8e-07  Score=69.54  Aligned_cols=83  Identities=14%  Similarity=0.211  Sum_probs=53.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHH-HHHHHHHHHHHhCCCeEEEEeCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRL-QLTNWIISNVTACDRAIFIFDEV  187 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~-~l~~~~~~~l~~~~~~vlilDEi  187 (247)
                      ++++.||.|+|||++++.+++.+..      ..+.+.+++......     . ... .+...+.+.. .....++||||+
T Consensus         4 ~~~l~G~R~vGKTtll~~~~~~~~~------~~~~~yi~~~~~~~~-----~-~~~~~~~~~~~~~~-~~~~~~i~iDEi   70 (128)
T PF13173_consen    4 IIILTGPRGVGKTTLLKQLAKDLLP------PENILYINFDDPRDR-----R-LADPDLLEYFLELI-KPGKKYIFIDEI   70 (128)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcc------cccceeeccCCHHHH-----H-HhhhhhHHHHHHhh-ccCCcEEEEehh
Confidence            6789999999999999999888652      235566655432110     0 000 0112222221 125689999999


Q ss_pred             CCCChhhHHHHHhhcccC
Q psy1694         188 DKFPKGLLDVIIPFIDHH  205 (247)
Q Consensus       188 ek~~~~~~~~Ll~~Le~~  205 (247)
                      +++| +....+..+.+.+
T Consensus        71 q~~~-~~~~~lk~l~d~~   87 (128)
T PF13173_consen   71 QYLP-DWEDALKFLVDNG   87 (128)
T ss_pred             hhhc-cHHHHHHHHHHhc
Confidence            9998 5778888888864

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=98.51  E-value=2.2e-06  Score=73.74  Aligned_cols=121  Identities=14%  Similarity=0.152  Sum_probs=79.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++|-+..++.+.+-..+++.+.    .+.++|++|+.|||||++.+++......   .|.  ..|.+.-..+       
T Consensus        28 ~L~Gie~Qk~~l~~Nt~~Fl~G~----pannvLL~G~rGtGKSSlVkall~~y~~---~GL--RlIev~k~~L-------   91 (249)
T PF05673_consen   28 DLIGIERQKEALIENTEQFLQGL----PANNVLLWGARGTGKSSLVKALLNEYAD---QGL--RLIEVSKEDL-------   91 (249)
T ss_pred             HhcCHHHHHHHHHHHHHHHHcCC----CCcceEEecCCCCCHHHHHHHHHHHHhh---cCc--eEEEECHHHh-------
Confidence            38999999999998888887543    2346899999999999999999988655   542  2344432111       


Q ss_pred             HHHHHHHHHHHHHHHHHhCC-CeEEEEeCCCCCC-hhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         159 VSLYRLQLTNWIISNVTACD-RAIFIFDEVDKFP-KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       159 v~~~~~~l~~~~~~~l~~~~-~~vlilDEiek~~-~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                       .    .+. .+...+...+ +-|||+|+..=-. ..-...|+.+||.+- .  ..-.|+++..|||.
T Consensus        92 -~----~l~-~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgl-e--~~P~NvliyATSNR  150 (249)
T PF05673_consen   92 -G----DLP-ELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGL-E--ARPDNVLIYATSNR  150 (249)
T ss_pred             -c----cHH-HHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCcc-c--cCCCcEEEEEecch
Confidence             1    111 2334455444 4788899874222 344566777777542 1  12368999999996

>KOG1969|consensus

Probab=98.51  E-value=6.4e-07  Score=86.54  Aligned_cols=82  Identities=22%  Similarity=0.369  Sum_probs=56.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHh---CCCeEEEEe
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA---CDRAIFIFD  185 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~---~~~~vlilD  185 (247)
                      .+||+||||.|||++|..+|++      .|.  ..+.+|.+.     .......++.+.+.+...-..   .....+|+|
T Consensus       328 ilLL~GppGlGKTTLAHViAkq------aGY--sVvEINASD-----eRt~~~v~~kI~~avq~~s~l~adsrP~CLViD  394 (877)
T KOG1969|consen  328 ILLLCGPPGLGKTTLAHVIAKQ------AGY--SVVEINASD-----ERTAPMVKEKIENAVQNHSVLDADSRPVCLVID  394 (877)
T ss_pred             eEEeecCCCCChhHHHHHHHHh------cCc--eEEEecccc-----cccHHHHHHHHHHHHhhccccccCCCcceEEEe
Confidence            6899999999999999999998      222  346666543     222233444444444321111   123778999


Q ss_pred             CCCCCChhhHHHHHhhcc
Q psy1694         186 EVDKFPKGLLDVIIPFID  203 (247)
Q Consensus       186 Eiek~~~~~~~~Ll~~Le  203 (247)
                      |||-.|+...+.|+..+.
T Consensus       395 EIDGa~~~~Vdvilslv~  412 (877)
T KOG1969|consen  395 EIDGAPRAAVDVILSLVK  412 (877)
T ss_pred             cccCCcHHHHHHHHHHHH
Confidence            999999999999999988

>KOG2035|consensus

Probab=98.46  E-value=1.3e-06  Score=76.09  Aligned_cols=111  Identities=14%  Similarity=0.202  Sum_probs=69.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCC------------Cc-ceeeec--ccccC-CCCChHHHHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT------------SR-FVHKFN--SRIHF-PNENHVSLYRLQLTNWIIS  172 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~------------~~-~v~~~~--~~l~~-~~~~~v~~~~~~l~~~~~~  172 (247)
                      .++++||+|+||.+.+-++-+++|+   .|..            ++ -+.++.  |..|- -.|+..|.|.......+..
T Consensus        36 Hll~yGPSGaGKKTrimclL~elYG---~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellK  112 (351)
T KOG2035|consen   36 HLLVYGPSGAGKKTRIMCLLRELYG---VGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLK  112 (351)
T ss_pred             eEEEECCCCCCchhhHHHHHHHHhC---CCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHH
Confidence            6899999999999999999999998   4431            11 122221  11110 0122223232211111111


Q ss_pred             HH---------HhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHH
Q psy1694         173 NV---------TACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEI  229 (247)
Q Consensus       173 ~l---------~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i  229 (247)
                      .+         .+.++.+++|.|+|++..+.|.+|.+.||.+.       .++-+|+.+|..+..|
T Consensus       113 evAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs-------~~~RlIl~cns~SriI  171 (351)
T KOG2035|consen  113 EVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS-------SNCRLILVCNSTSRII  171 (351)
T ss_pred             HHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHh-------cCceEEEEecCcccch
Confidence            11         12356999999999999999999999999975       5666777777655443

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=98.46  E-value=1e-06  Score=66.53  Aligned_cols=95  Identities=16%  Similarity=0.267  Sum_probs=58.5

Q ss_pred             EEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDK  189 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek  189 (247)
                      +.|+||||+|||++|+.|++.+..+........++..+.      ...           ...+   -....++++||+..
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~------~~~-----------~w~g---Y~~q~vvi~DD~~~   60 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNP------GDK-----------FWDG---YQGQPVVIIDDFGQ   60 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCC------ccc-----------hhhc---cCCCcEEEEeecCc
Confidence            468999999999999999998775210001112111111      111           1111   11347999999988


Q ss_pred             CChh----hHHHHHhhcccCccccc--------ccCCceEEEEEeCC
Q psy1694         190 FPKG----LLDVIIPFIDHHAVYNQ--------ISFQNTIFLFLSNS  224 (247)
Q Consensus       190 ~~~~----~~~~Ll~~Le~~~~~~~--------~~~~~~ifI~tSN~  224 (247)
                      ....    ....++++++..++.-.        ..+.-.++|.|||.
T Consensus        61 ~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~  107 (107)
T PF00910_consen   61 DNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF  107 (107)
T ss_pred             cccccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence            8754    67778888888664321        23444688999884

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK06620 hypothetical protein; Validated

Probab=98.45  E-value=1.2e-06  Score=74.39  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=19.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .++|+||+|+|||++++++++.
T Consensus        46 ~l~l~Gp~G~GKThLl~a~~~~   67 (214)
T PRK06620         46 TLLIKGPSSSGKTYLTKIWQNL   67 (214)
T ss_pred             eEEEECCCCCCHHHHHHHHHhc
Confidence            5799999999999999998665

>KOG0742|consensus

Probab=98.43  E-value=1.7e-06  Score=79.02  Aligned_cols=103  Identities=15%  Similarity=0.236  Sum_probs=55.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  188 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie  188 (247)
                      +++|+||||||||+.|+-||.+      .|.+  |-.+.-+..---....|.... .+-+|-.   ....+=++||||+|
T Consensus       386 NilfyGPPGTGKTm~ArelAr~------SGlD--YA~mTGGDVAPlG~qaVTkiH-~lFDWak---kS~rGLllFIDEAD  453 (630)
T KOG0742|consen  386 NILFYGPPGTGKTMFARELARH------SGLD--YAIMTGGDVAPLGAQAVTKIH-KLFDWAK---KSRRGLLLFIDEAD  453 (630)
T ss_pred             heeeeCCCCCCchHHHHHHHhh------cCCc--eehhcCCCccccchHHHHHHH-HHHHHHh---hcccceEEEehhhH
Confidence            6999999999999999999988      3321  111111111000011222111 1222221   22344677899995


Q ss_pred             ---------CCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694         189 ---------KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  227 (247)
Q Consensus       189 ---------k~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~  227 (247)
                               +|+++....|--+|=.    .+...++.+.++.||..++
T Consensus       454 AFLceRnktymSEaqRsaLNAlLfR----TGdqSrdivLvlAtNrpgd  497 (630)
T KOG0742|consen  454 AFLCERNKTYMSEAQRSALNALLFR----TGDQSRDIVLVLATNRPGD  497 (630)
T ss_pred             HHHHHhchhhhcHHHHHHHHHHHHH----hcccccceEEEeccCCccc
Confidence                     4566554444433321    2334477788888998654

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=98.41  E-value=3.9e-07  Score=83.20  Aligned_cols=106  Identities=19%  Similarity=0.272  Sum_probs=59.4

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee--ecccccCCCCChHHHHH---HHHHHHHHHHHHhCC
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK--FNSRIHFPNENHVSLYR---LQLTNWIISNVTACD  178 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~--~~~~l~~~~~~~v~~~~---~~l~~~~~~~l~~~~  178 (247)
                      ...|..+.|+|++|+|||++.-..-+.+-.   +.  +.-+|+  ++.+++..    ...++   .-+.... ..+.. .
T Consensus        59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~---~~--k~R~HFh~Fm~~vh~~----l~~~~~~~~~l~~va-~~l~~-~  127 (362)
T PF03969_consen   59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPI---KR--KRRVHFHEFMLDVHSR----LHQLRGQDDPLPQVA-DELAK-E  127 (362)
T ss_pred             CCCCceEEEECCCCCchhHHHHHHHHhCCc---cc--cccccccHHHHHHHHH----HHHHhCCCccHHHHH-HHHHh-c
Confidence            345678999999999999999999776533   11  222232  22222100    00000   0011111 11111 2


Q ss_pred             CeEEEEeCCCCCChh---hHHHHHhhcccCcccccccCCceEEEEEeCCChHHH
Q psy1694         179 RAIFIFDEVDKFPKG---LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEI  229 (247)
Q Consensus       179 ~~vlilDEiek~~~~---~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i  229 (247)
                      ..+|.|||++--+.+   ++..|+..|=+         +.+++|+|||..++++
T Consensus       128 ~~lLcfDEF~V~DiaDAmil~rLf~~l~~---------~gvvlVaTSN~~P~~L  172 (362)
T PF03969_consen  128 SRLLCFDEFQVTDIADAMILKRLFEALFK---------RGVVLVATSNRPPEDL  172 (362)
T ss_pred             CCEEEEeeeeccchhHHHHHHHHHHHHHH---------CCCEEEecCCCChHHH
Confidence            359999999766543   44555544433         5679999999988743

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=2.2e-06  Score=76.65  Aligned_cols=74  Identities=19%  Similarity=0.275  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhccc------CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCc
Q psy1694          69 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRY------HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR  142 (247)
Q Consensus        69 ~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~------~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~  142 (247)
                      .+.+-..|++.++||..|.+.+.-++++.+....      +.-.|.++|..||+|+|||.+||.+|+..        ..|
T Consensus         6 PreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~--------~aP   77 (444)
T COG1220           6 PREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA--------GAP   77 (444)
T ss_pred             HHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHh--------CCC
Confidence            4566778999999999999999988886432111      12257789999999999999999999874        259


Q ss_pred             ceeeeccc
Q psy1694         143 FVHKFNSR  150 (247)
Q Consensus       143 ~v~~~~~~  150 (247)
                      |+.+-...
T Consensus        78 FiKVEATK   85 (444)
T COG1220          78 FIKVEATK   85 (444)
T ss_pred             eEEEEeee
Confidence            98887543

>TIGR02688 conserved hypothetical protein TIGR02688

Probab=98.32  E-value=6.4e-06  Score=76.18  Aligned_cols=96  Identities=19%  Similarity=0.289  Sum_probs=64.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHH-hhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS-IFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEV  187 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~-l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEi  187 (247)
                      ++++.||+|||||++|..++.. ...   .|   .|+.  .+.       .+.    .+.....+.+  +..++|+|||+
T Consensus       211 Nli~lGp~GTGKThla~~l~~~~a~~---sG---~f~T--~a~-------Lf~----~L~~~~lg~v--~~~DlLI~DEv  269 (449)
T TIGR02688       211 NLIELGPKGTGKSYIYNNLSPYVILI---SG---GTIT--VAK-------LFY----NISTRQIGLV--GRWDVVAFDEV  269 (449)
T ss_pred             cEEEECCCCCCHHHHHHHHhHHHHHH---cC---CcCc--HHH-------HHH----HHHHHHHhhh--ccCCEEEEEcC
Confidence            7899999999999999999777 232   22   1111  111       111    1222222322  34589999999


Q ss_pred             CCCCh----hhHHHHHhhcccCcccccc--cCCceEEEEEeCCC
Q psy1694         188 DKFPK----GLLDVIIPFIDHHAVYNQI--SFQNTIFLFLSNSG  225 (247)
Q Consensus       188 ek~~~----~~~~~Ll~~Le~~~~~~~~--~~~~~ifI~tSN~g  225 (247)
                      ..+|.    +..+.|+-.|+.+.+..+.  -..++-++|.-|..
T Consensus       270 gylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~  313 (449)
T TIGR02688       270 ATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVP  313 (449)
T ss_pred             CCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccC
Confidence            99764    4678899999999888764  23477788887774

Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.

>KOG0740|consensus

Probab=98.32  E-value=4.6e-06  Score=77.09  Aligned_cols=138  Identities=15%  Similarity=0.150  Sum_probs=73.9

Q ss_pred             cCChHHHHHHHHHHHHHhhh-----cccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          80 VHGQELAISHICGALKNHFQ-----NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~-----~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      +-|.+.+.+.+.+++.=-..     ..- +.-+..+|+.||||+|||+++++||-...        ..|..+..+.+..-
T Consensus       155 i~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~--------atff~iSassLtsK  225 (428)
T KOG0740|consen  155 IAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESG--------ATFFNISASSLTSK  225 (428)
T ss_pred             CcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhc--------ceEeeccHHHhhhh
Confidence            56677777776665531111     111 12233589999999999999999987732        35655555554222


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh------------hhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694         155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK------------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS  222 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS  222 (247)
                      ..+.   - +.+...+...-+....+|+|+||+|++=.            -....|++..--   ....+ .+.++|.+|
T Consensus       226 ~~Ge---~-eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~---~s~~~-drvlvigaT  297 (428)
T KOG0740|consen  226 YVGE---S-EKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGK---NSAPD-DRVLVIGAT  297 (428)
T ss_pred             ccCh---H-HHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccc---cCCCC-CeEEEEecC
Confidence            1221   1 22233343322333459999999977611            122223332221   11122 377788888


Q ss_pred             CCChHHHHHHHHH
Q psy1694         223 NSGGTEIMNTFLE  235 (247)
Q Consensus       223 N~g~~~i~~~~~~  235 (247)
                      |.. .++.+.+..
T Consensus       298 N~P-~e~Dea~~R  309 (428)
T KOG0740|consen  298 NRP-WELDEAARR  309 (428)
T ss_pred             CCc-hHHHHHHHH
Confidence            874 344444443

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.31  E-value=2.7e-05  Score=71.79  Aligned_cols=122  Identities=15%  Similarity=0.187  Sum_probs=70.0

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhccc-cCCCCCcceeeecc------------c-ccCCCCChHHHHHHHHHHHH
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDKGTSRFVHKFNS------------R-IHFPNENHVSLYRLQLTNWI  170 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~~~-~~g~~~~~v~~~~~------------~-l~~~~~~~v~~~~~~l~~~~  170 (247)
                      .+|.+++|.||+|+|||+++..+|..+.... ..+....++..++.            + +..|. .....+. .+...+
T Consensus       172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv-~~~~~~~-~l~~~L  249 (388)
T PRK12723        172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV-KAIESFK-DLKEEI  249 (388)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce-EeeCcHH-HHHHHH
Confidence            3577899999999999999999998754210 01222223333331            1 11110 1111111 122222


Q ss_pred             HHHHHhCCCeEEEEeCCCCCChhh--HHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHH
Q psy1694         171 ISNVTACDRAIFIFDEVDKFPKGL--LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL  236 (247)
Q Consensus       171 ~~~l~~~~~~vlilDEiek~~~~~--~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~  236 (247)
                      .   ......++++|++++++.+.  +..+..+++...     .-...++++-++.+.+++.+..-.+
T Consensus       250 ~---~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~-----~~~e~~LVlsat~~~~~~~~~~~~~  309 (388)
T PRK12723        250 T---QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACG-----RDAEFHLAVSSTTKTSDVKEIFHQF  309 (388)
T ss_pred             H---HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcC-----CCCeEEEEEcCCCCHHHHHHHHHHh
Confidence            1   12356899999999998653  356666666421     0125678888889988888655443

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.27  E-value=9.5e-06  Score=70.45  Aligned_cols=90  Identities=17%  Similarity=0.266  Sum_probs=51.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee-e------------cccccCCCCCh-HHHHHHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK-F------------NSRIHFPNENH-VSLYRLQLTNWIISNV  174 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~-~------------~~~l~~~~~~~-v~~~~~~l~~~~~~~l  174 (247)
                      .++++||+|+|||++++.+++.+..   ...  ....+ +            +..+..+..+. .......+...+....
T Consensus        45 ~~~l~G~~G~GKTtl~~~l~~~l~~---~~~--~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~  119 (269)
T TIGR03015        45 FILITGEVGAGKTTLIRNLLKRLDQ---ERV--VAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF  119 (269)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCC---CCe--EEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            5788999999999999999887542   110  00000 0            11111111111 0111122333343334


Q ss_pred             HhCCCeEEEEeCCCCCChhhHHHHHhhcc
Q psy1694         175 TACDRAIFIFDEVDKFPKGLLDVIIPFID  203 (247)
Q Consensus       175 ~~~~~~vlilDEiek~~~~~~~~Ll~~Le  203 (247)
                      ......++++||++.+++...+.|..+.+
T Consensus       120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~  148 (269)
T TIGR03015       120 AAGKRALLVVDEAQNLTPELLEELRMLSN  148 (269)
T ss_pred             hCCCCeEEEEECcccCCHHHHHHHHHHhC
Confidence            44556899999999999888777765443

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>TIGR00602 rad24 checkpoint protein rad24

Probab=98.27  E-value=6.4e-06  Score=80.20  Aligned_cols=51  Identities=14%  Similarity=0.152  Sum_probs=38.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+.||...++.+...+........   ..-.++|+||+|+|||++++++|+.+-
T Consensus        85 el~~~~~ki~~l~~~l~~~~~~~~---~~~illL~GP~GsGKTTl~~~la~~l~  135 (637)
T TIGR00602        85 ELAVHKKKIEEVETWLKAQVLENA---PKRILLITGPSGCGKSTTIKILSKELG  135 (637)
T ss_pred             HhcCcHHHHHHHHHHHHhcccccC---CCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence            599999999888877765432111   112578999999999999999998753

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK14974 cell division protein FtsY; Provisional

Probab=98.26  E-value=2.9e-05  Score=70.33  Aligned_cols=29  Identities=28%  Similarity=0.345  Sum_probs=25.3

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+|.+++|.|++|+|||+++..+|..+..
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~  166 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKK  166 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            35788999999999999999999987654

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.24  E-value=5.1e-06  Score=67.62  Aligned_cols=49  Identities=18%  Similarity=0.293  Sum_probs=30.8

Q ss_pred             cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694          80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++|.+..++.+...+. . ..   ...|..++++|++|+|||++.+.+.+.+-.
T Consensus         2 fvgR~~e~~~l~~~l~-~-~~---~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~   50 (185)
T PF13191_consen    2 FVGREEEIERLRDLLD-A-AQ---SGSPRNLLLTGESGSGKTSLLRALLDRLAE   50 (185)
T ss_dssp             -TT-HHHHHHHHHTTG-G-TS---S-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH-H-HH---cCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5788888877776664 1 11   234557899999999999999988887654

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.21  E-value=1.8e-05  Score=66.37  Aligned_cols=117  Identities=13%  Similarity=0.191  Sum_probs=68.9

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHH---HH-----------------HHHH
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVS---LY-----------------RLQL  166 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~---~~-----------------~~~l  166 (247)
                      |.+++|.||+|+|||+++-.||..+-.   .+..-.++..+..+     .+.+.   .|                 .+.+
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~---~~~~v~lis~D~~R-----~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~   72 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKL---KGKKVALISADTYR-----IGAVEQLKTYAEILGVPFYVARTESDPAEIA   72 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEEESTSS-----THHHHHHHHHHHHHTEEEEESSTTSCHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhh---ccccceeecCCCCC-----ccHHHHHHHHHHHhccccchhhcchhhHHHH
Confidence            568999999999999999999988654   33332333333211     11110   01                 0111


Q ss_pred             HHHHHHHHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHHHHc
Q psy1694         167 TNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKS  239 (247)
Q Consensus       167 ~~~~~~~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~~~~  239 (247)
                      ...+ +........++++|-.++.+.  .....|..+++.-      .-.+.++++.++.+.+.+. .+.++.+.
T Consensus        73 ~~~l-~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~------~~~~~~LVlsa~~~~~~~~-~~~~~~~~  139 (196)
T PF00448_consen   73 REAL-EKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEAL------NPDEVHLVLSATMGQEDLE-QALAFYEA  139 (196)
T ss_dssp             HHHH-HHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH------SSSEEEEEEEGGGGGHHHH-HHHHHHHH
T ss_pred             HHHH-HHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhc------CCccceEEEecccChHHHH-HHHHHhhc
Confidence            1222 233445568999999999884  4455555544432      1146788888899988887 44555553

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG0741|consensus

Probab=98.20  E-value=1.9e-05  Score=74.32  Aligned_cols=99  Identities=17%  Similarity=0.287  Sum_probs=61.0

Q ss_pred             CCCeE-EEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc--cCCCCChHHHHHHHHHHHHHHHHHh---CC
Q psy1694         105 TKALA-ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI--HFPNENHVSLYRLQLTNWIISNVTA---CD  178 (247)
Q Consensus       105 ~kpl~-lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l--~~~~~~~v~~~~~~l~~~~~~~l~~---~~  178 (247)
                      ..|++ ++|+||||+|||.+|..+|..  +      +=|||.+-.++-  .+++      +..  -..+.+.+..   .+
T Consensus       535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~--S------~FPFvKiiSpe~miG~sE------saK--c~~i~k~F~DAYkS~  598 (744)
T KOG0741|consen  535 RSPLVSVLLEGPPGSGKTALAAKIALS--S------DFPFVKIISPEDMIGLSE------SAK--CAHIKKIFEDAYKSP  598 (744)
T ss_pred             cCcceEEEEecCCCCChHHHHHHHHhh--c------CCCeEEEeChHHccCccH------HHH--HHHHHHHHHHhhcCc
Confidence            45665 999999999999999999665  3      358888754321  1111      111  1223333443   34


Q ss_pred             CeEEEEeCCCCCC----------hhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         179 RAIFIFDEVDKFP----------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       179 ~~vlilDEiek~~----------~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      -+++++|++|++=          .-++++|+-+|.+.+.     -.+-.+|+.|..
T Consensus       599 lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~pp-----kg~kLli~~TTS  649 (744)
T KOG0741|consen  599 LSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPP-----KGRKLLIFGTTS  649 (744)
T ss_pred             ceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCC-----CCceEEEEeccc
Confidence            5999999998872          2467778878877541     123455655543

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=98.20  E-value=8.6e-06  Score=73.91  Aligned_cols=80  Identities=24%  Similarity=0.191  Sum_probs=51.7

Q ss_pred             hcCChHHHHHHH---HHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694          79 HVHGQELAISHI---CGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN  155 (247)
Q Consensus        79 ~l~Gq~~a~~~l---~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~  155 (247)
                      .++||..|.+..   ++.++..--.      ...+||.||||||||.+|-++|+.|-.      +-||+.+..+++...+
T Consensus        25 GlVGQ~~AReAagiiv~mIk~~K~a------Gr~iLiaGppGtGKTAlA~~ia~eLG~------~~PF~~isgSEiyS~e   92 (398)
T PF06068_consen   25 GLVGQEKAREAAGIIVDMIKEGKIA------GRAILIAGPPGTGKTALAMAIAKELGE------DVPFVSISGSEIYSSE   92 (398)
T ss_dssp             TEES-HHHHHHHHHHHHHHHTT--T------T-EEEEEE-TTSSHHHHHHHHHHHCTT------TS-EEEEEGGGG-BTT
T ss_pred             cccChHHHHHHHHHHHHHHhccccc------CcEEEEeCCCCCCchHHHHHHHHHhCC------CCCeeEcccceeeecc
Confidence            699999988754   3444432212      227899999999999999999999543      6799999999986554


Q ss_pred             CChHHHHHHHHHHHHHHHHHhCC
Q psy1694         156 ENHVSLYRLQLTNWIISNVTACD  178 (247)
Q Consensus       156 ~~~v~~~~~~l~~~~~~~l~~~~  178 (247)
                      .+.        .+.+.++++++-
T Consensus        93 ~kK--------TE~L~qa~RraI  107 (398)
T PF06068_consen   93 VKK--------TEALTQAFRRAI  107 (398)
T ss_dssp             C-H--------HHHHHHHHHCSE
T ss_pred             cCc--------hHHHHHHHHHhh
Confidence            433        233556666653

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.18  E-value=2.9e-05  Score=62.73  Aligned_cols=28  Identities=29%  Similarity=0.403  Sum_probs=24.5

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .++-+.++|+||+|||+++..+++.|-.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~   31 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLRE   31 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence            3456899999999999999999999765

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=98.13  E-value=9.3e-06  Score=73.11  Aligned_cols=66  Identities=27%  Similarity=0.196  Sum_probs=49.1

Q ss_pred             hcCChHHHHHH---HHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694          79 HVHGQELAISH---ICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN  155 (247)
Q Consensus        79 ~l~Gq~~a~~~---l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~  155 (247)
                      .++||..|.+.   +++.++..-...      ..+|+.||||||||.+|-.||+.|-+      +-||+.++.+++...+
T Consensus        40 G~VGQ~~AReAaGvIv~mik~gk~aG------rgiLi~GppgTGKTAlA~gIa~eLG~------dvPF~~isgsEiYS~E  107 (450)
T COG1224          40 GLVGQEEAREAAGVIVKMIKQGKMAG------RGILIVGPPGTGKTALAMGIARELGE------DVPFVAISGSEIYSLE  107 (450)
T ss_pred             cccchHHHHHhhhHHHHHHHhCcccc------cEEEEECCCCCcHHHHHHHHHHHhCC------CCCceeeccceeeeec
Confidence            58999998874   444444322222      26899999999999999999999643      6799999988875444


Q ss_pred             C
Q psy1694         156 E  156 (247)
Q Consensus       156 ~  156 (247)
                      .
T Consensus       108 ~  108 (450)
T COG1224         108 V  108 (450)
T ss_pred             c
Confidence            3

>PRK09087 hypothetical protein; Validated

Probab=98.12  E-value=1.3e-05  Score=68.67  Aligned_cols=88  Identities=11%  Similarity=0.039  Sum_probs=51.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  188 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie  188 (247)
                      .+.|+||+|+|||++++++++.. +         ...++...           +.    ......+   ..++|++||++
T Consensus        46 ~l~l~G~~GsGKThLl~~~~~~~-~---------~~~i~~~~-----------~~----~~~~~~~---~~~~l~iDDi~   97 (226)
T PRK09087         46 VVVLAGPVGSGKTHLASIWREKS-D---------ALLIHPNE-----------IG----SDAANAA---AEGPVLIEDID   97 (226)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhc-C---------CEEecHHH-----------cc----hHHHHhh---hcCeEEEECCC
Confidence            37899999999999999987652 2         11121111           11    1111111   12689999999


Q ss_pred             CCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHH
Q psy1694         189 KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN  231 (247)
Q Consensus       189 k~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~  231 (247)
                      .++. .+..|...+..-.      -++..+|+||+..+..+..
T Consensus        98 ~~~~-~~~~lf~l~n~~~------~~g~~ilits~~~p~~~~~  133 (226)
T PRK09087         98 AGGF-DETGLFHLINSVR------QAGTSLLMTSRLWPSSWNV  133 (226)
T ss_pred             CCCC-CHHHHHHHHHHHH------hCCCeEEEECCCChHHhcc
Confidence            8753 3444555544311      0234688888887776543

>PRK10536 hypothetical protein; Provisional

Probab=98.12  E-value=4.3e-05  Score=66.52  Aligned_cols=27  Identities=15%  Similarity=0.379  Sum_probs=24.0

Q ss_pred             eEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694         180 AIFIFDEVDKFPKGLLDVIIPFIDHHA  206 (247)
Q Consensus       180 ~vlilDEiek~~~~~~~~Ll~~Le~~~  206 (247)
                      ++||+||++.+++.....++.-+.++.
T Consensus       178 ~~vIvDEaqn~~~~~~k~~ltR~g~~s  204 (262)
T PRK10536        178 AVVILDEAQNVTAAQMKMFLTRLGENV  204 (262)
T ss_pred             CEEEEechhcCCHHHHHHHHhhcCCCC
Confidence            899999999999999999998887653

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=98.10  E-value=9.1e-06  Score=71.09  Aligned_cols=39  Identities=15%  Similarity=0.290  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694          86 AISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus        86 a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      -++++.+.+....      +...++.++|++|+|||++|+.+++.
T Consensus         4 ~~~~l~~~L~~~~------~~~~~v~I~G~~G~GKT~LA~~~~~~   42 (287)
T PF00931_consen    4 EIEKLKDWLLDNS------NEVRVVAIVGMGGIGKTTLARQVARD   42 (287)
T ss_dssp             HHHHHHHHHHTTT------TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred             HHHHHHHHhhCCC------CCeEEEEEEcCCcCCcceeeeecccc
Confidence            3455555554322      23347899999999999999999876

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=98.09  E-value=3.6e-05  Score=66.18  Aligned_cols=75  Identities=24%  Similarity=0.238  Sum_probs=51.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  188 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie  188 (247)
                      .-.+.||+|||||++.+.+|+.+-.        +++.++|++...        + ..+.+.+.+....  +.-+.|||++
T Consensus        34 ~~~~~GpagtGKtetik~La~~lG~--------~~~vfnc~~~~~--------~-~~l~ril~G~~~~--GaW~cfdefn   94 (231)
T PF12774_consen   34 GGALSGPAGTGKTETIKDLARALGR--------FVVVFNCSEQMD--------Y-QSLSRILKGLAQS--GAWLCFDEFN   94 (231)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHCTT----------EEEEETTSSS---------H-HHHHHHHHHHHHH--T-EEEEETCC
T ss_pred             CCCCcCCCCCCchhHHHHHHHHhCC--------eEEEeccccccc--------H-HHHHHHHHHHhhc--Cchhhhhhhh
Confidence            4578999999999999999998533        677888876311        2 1344555565544  6788899999


Q ss_pred             CCChhhHHHHHhhc
Q psy1694         189 KFPKGLLDVIIPFI  202 (247)
Q Consensus       189 k~~~~~~~~Ll~~L  202 (247)
                      +++.+++..+-..+
T Consensus        95 rl~~~vLS~i~~~i  108 (231)
T PF12774_consen   95 RLSEEVLSVISQQI  108 (231)
T ss_dssp             CSSHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHH
Confidence            99997766654433

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.03  E-value=1.2e-05  Score=63.63  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=21.0

Q ss_pred             EEEeecCCChHHHHHHHHHHHhhc
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +++.||||+|||+++..++..+..
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~   25 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIAT   25 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHh
Confidence            578999999999999999888643

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PHA00729 NTP-binding motif containing protein

Probab=98.03  E-value=5.5e-05  Score=64.67  Aligned_cols=25  Identities=20%  Similarity=0.406  Sum_probs=22.5

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ..++++|+||||||++|.+|++.+.
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999864

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=98.03  E-value=6.3e-05  Score=62.94  Aligned_cols=85  Identities=18%  Similarity=0.196  Sum_probs=48.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHH---HHHHHHHH----------
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT---NWIISNVT----------  175 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~---~~~~~~l~----------  175 (247)
                      ..++.||+|||||++.+.+.+.+..   .+  .. |....++     ........+...   ..+...+.          
T Consensus        20 ~~~l~G~aGtGKT~~l~~~~~~~~~---~g--~~-v~~~apT-----~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~   88 (196)
T PF13604_consen   20 VSVLQGPAGTGKTTLLKALAEALEA---AG--KR-VIGLAPT-----NKAAKELREKTGIEAQTIHSFLYRIPNGDDEGR   88 (196)
T ss_dssp             EEEEEESTTSTHHHHHHHHHHHHHH---TT-----EEEEESS-----HHHHHHHHHHHTS-EEEHHHHTTEECCEECCSS
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHh---CC--Ce-EEEECCc-----HHHHHHHHHhhCcchhhHHHHHhcCCccccccc
Confidence            5678999999999999999888654   32  11 2221111     111111111000   00000000          


Q ss_pred             --hCCCeEEEEeCCCCCChhhHHHHHhhccc
Q psy1694         176 --ACDRAIFIFDEVDKFPKGLLDVIIPFIDH  204 (247)
Q Consensus       176 --~~~~~vlilDEiek~~~~~~~~Ll~~Le~  204 (247)
                        ..+..++|+||+..++...+..|+.....
T Consensus        89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~~  119 (196)
T PF13604_consen   89 PELPKKDVLIVDEASMVDSRQLARLLRLAKK  119 (196)
T ss_dssp             CC-TSTSEEEESSGGG-BHHHHHHHHHHS-T
T ss_pred             ccCCcccEEEEecccccCHHHHHHHHHHHHh
Confidence              12347999999999999999999998887

>PRK06581 DNA polymerase III subunit delta'; Validated

Probab=98.02  E-value=9.3e-05  Score=63.76  Aligned_cols=106  Identities=8%  Similarity=0.135  Sum_probs=67.7

Q ss_pred             EEEEeecCC-ChHHHHHHHHHHHhhccccCCC---CCcceeeecccccC-C--CCChHHHHHHHHHHHHHHHHHhCCCeE
Q psy1694         109 AISLHGLPG-TGKNYVTDFIVSSIFKRYKDKG---TSRFVHKFNSRIHF-P--NENHVSLYRLQLTNWIISNVTACDRAI  181 (247)
Q Consensus       109 ~lll~G~~G-tGKt~~A~~la~~l~~~~~~g~---~~~~v~~~~~~l~~-~--~~~~v~~~~~~l~~~~~~~l~~~~~~v  181 (247)
                      ..+|.|+.+ +||..++..+++.+++   .+.   ..|-++...++-.. .  ..-.+++-++ +.+.+...-...++.|
T Consensus        17 AYLfeG~n~~~~~~~~~~f~~~~l~~---~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIRe-L~~~l~~~p~~g~~KV   92 (263)
T PRK06581         17 SWLIEAENIEQALKDLEKFIYIKLFK---NSIPLENNPDYHFIARETSATSNAKNISIEQIRK-LQDFLSKTSAISGYKV   92 (263)
T ss_pred             eeeEeCCChhhHHHHHHHHHHHHHhc---cCcccCCCCCEEEEeccccccccCCcccHHHHHH-HHHHHhhCcccCCcEE
Confidence            579999998 9999999999999876   321   11222222111100 0  0111222221 2222211112345699


Q ss_pred             EEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         182 FIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       182 lilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                      +++|++|+|.....++||+.|||++       .+++||++|+..
T Consensus        93 iII~~ae~mt~~AANALLKtLEEPP-------~~t~fILit~~~  129 (263)
T PRK06581         93 AIIYSAELMNLNAANSCLKILEDAP-------KNSYIFLITSRA  129 (263)
T ss_pred             EEEechHHhCHHHHHHHHHhhcCCC-------CCeEEEEEeCCh
Confidence            9999999999999999999999987       788999887653

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.01  E-value=7.7e-05  Score=66.18  Aligned_cols=118  Identities=11%  Similarity=0.080  Sum_probs=72.4

Q ss_pred             cHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccC--CCCCccee
Q psy1694          68 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD--KGTSRFVH  145 (247)
Q Consensus        68 ~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~--g~~~~~v~  145 (247)
                      +.+++..-...+.+|.+.|.+.+ +.+...+..|. ..++-+++++|++|.|||++++...+. +.....  +..-|.+.
T Consensus        24 ~~eRI~~i~~~rWIgY~~A~~~L-~~L~~Ll~~P~-~~Rmp~lLivG~snnGKT~Ii~rF~~~-hp~~~d~~~~~~PVv~  100 (302)
T PF05621_consen   24 DEERIAYIRADRWIGYPRAKEAL-DRLEELLEYPK-RHRMPNLLIVGDSNNGKTMIIERFRRL-HPPQSDEDAERIPVVY  100 (302)
T ss_pred             HHHHHHHHhcCCeecCHHHHHHH-HHHHHHHhCCc-ccCCCceEEecCCCCcHHHHHHHHHHH-CCCCCCCCCccccEEE
Confidence            34455655666899999887755 56666666665 444447999999999999999999776 331111  11124444


Q ss_pred             eecc--------------cccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q psy1694         146 KFNS--------------RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF  190 (247)
Q Consensus       146 ~~~~--------------~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~  190 (247)
                      +-++              .+..|....-.  ...+.......++.+.-.++||||++.+
T Consensus       101 vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~--~~~~~~~~~~llr~~~vrmLIIDE~H~l  157 (302)
T PF05621_consen  101 VQMPPEPDERRFYSAILEALGAPYRPRDR--VAKLEQQVLRLLRRLGVRMLIIDEFHNL  157 (302)
T ss_pred             EecCCCCChHHHHHHHHHHhCcccCCCCC--HHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence            4331              11111111101  1123445556778888899999999886

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=98.01  E-value=3.6e-05  Score=71.07  Aligned_cols=134  Identities=12%  Similarity=0.100  Sum_probs=73.0

Q ss_pred             HHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694          76 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN  155 (247)
Q Consensus        76 L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~  155 (247)
                      ++..+.|.+...  ...+...+...+..+..  .++|+||+|.|||++++++++....   .+....++.+....+    
T Consensus        86 FdnFv~g~~N~~--A~aa~~~va~~~g~~~n--plfi~G~~GlGKTHLl~Aign~~~~---~~~~a~v~y~~se~f----  154 (408)
T COG0593          86 FDNFVVGPSNRL--AYAAAKAVAENPGGAYN--PLFIYGGVGLGKTHLLQAIGNEALA---NGPNARVVYLTSEDF----  154 (408)
T ss_pred             hhheeeCCchHH--HHHHHHHHHhccCCcCC--cEEEECCCCCCHHHHHHHHHHHHHh---hCCCceEEeccHHHH----
Confidence            344577755322  22233334343331223  3699999999999999999999766   443333444432221    


Q ss_pred             CChHHHHHHHHH----HHHHHHHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHH
Q psy1694         156 ENHVSLYRLQLT----NWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEI  229 (247)
Q Consensus       156 ~~~v~~~~~~l~----~~~~~~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i  229 (247)
                         ...+...+.    ..++...   .-.+++||+++.+..  ..|..+...+..=.     +..+ -+++||...+.++
T Consensus       155 ---~~~~v~a~~~~~~~~Fk~~y---~~dlllIDDiq~l~gk~~~qeefFh~FN~l~-----~~~k-qIvltsdr~P~~l  222 (408)
T COG0593         155 ---TNDFVKALRDNEMEKFKEKY---SLDLLLIDDIQFLAGKERTQEEFFHTFNALL-----ENGK-QIVLTSDRPPKEL  222 (408)
T ss_pred             ---HHHHHHHHHhhhHHHHHHhh---ccCeeeechHhHhcCChhHHHHHHHHHHHHH-----hcCC-EEEEEcCCCchhh
Confidence               111111111    1222222   347999999988754  33444444333211     1122 6899999999988


Q ss_pred             HHH
Q psy1694         230 MNT  232 (247)
Q Consensus       230 ~~~  232 (247)
                      +..
T Consensus       223 ~~~  225 (408)
T COG0593         223 NGL  225 (408)
T ss_pred             ccc
Confidence            744

>PRK04296 thymidine kinase; Provisional

Probab=97.98  E-value=4.7e-05  Score=63.38  Aligned_cols=25  Identities=12%  Similarity=-0.116  Sum_probs=21.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ..+++||+|+|||+.+..++..+..
T Consensus         4 i~litG~~GsGKTT~~l~~~~~~~~   28 (190)
T PRK04296          4 LEFIYGAMNSGKSTELLQRAYNYEE   28 (190)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHH
Confidence            5788999999999999888877544

>PRK13406 bchD magnesium chelatase subunit D; Provisional

Probab=97.98  E-value=1.3e-05  Score=77.52  Aligned_cols=91  Identities=8%  Similarity=0.067  Sum_probs=62.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHH--HHHHHHH----HHHHHHHhCCCeEE
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSL--YRLQLTN----WIISNVTACDRAIF  182 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~--~~~~l~~----~~~~~l~~~~~~vl  182 (247)
                      .+++.|+.||||+++++.++..|-.      ..||+....+.-   ....++.  ....+..    .-.+.+..+.++||
T Consensus        27 Gv~i~g~~G~~ks~~~r~l~~llp~------~~p~r~~p~~~t---~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL   97 (584)
T PRK13406         27 GVVLRARAGPVRDRWLAALRALLPA------GTPLRRLPPGIA---DDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVL   97 (584)
T ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCC------CCCcccCCCCCc---HHHccCCchHHhHhhcCCcCCCCCceeeccCCEE
Confidence            5899999999999999999887532      246665543211   1111111  0110100    11256678888999


Q ss_pred             EEeCCCCCChhhHHHHHhhcccCccc
Q psy1694         183 IFDEVDKFPKGLLDVIIPFIDHHAVY  208 (247)
Q Consensus       183 ilDEiek~~~~~~~~Ll~~Le~~~~~  208 (247)
                      |+||++.+++.+++.|+..|+++.++
T Consensus        98 ~lDe~n~~~~~~~~aLleame~G~vt  123 (584)
T PRK13406         98 VLAMAERLEPGTAARLAAALDTGEVR  123 (584)
T ss_pred             EecCcccCCHHHHHHHHHHHhCCcEE
Confidence            99999999999999999999998754

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.97  E-value=0.00025  Score=65.41  Aligned_cols=136  Identities=15%  Similarity=0.188  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHhhhccc-CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHH-
Q psy1694          85 LAISHICGALKNHFQNRY-HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLY-  162 (247)
Q Consensus        85 ~a~~~l~~~l~~~~~~~~-~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~-  162 (247)
                      ...+.+.+.+......+. ...+|..+.|.||+|+|||+++..||..+..   .+...-++..+...     .+.+..+ 
T Consensus       218 ~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTiaKLA~~L~~---~GkkVglI~aDt~R-----iaAvEQLk  289 (436)
T PRK11889        218 EVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSR-----IGTVQQLQ  289 (436)
T ss_pred             HHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHHHHHHHHHHH---cCCcEEEEecCCcc-----hHHHHHHH
Confidence            444555555544443221 1245678999999999999999999988765   44322222222110     0011101 


Q ss_pred             ---------------HHHHHHHHHHHHHh-CCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         163 ---------------RLQLTNWIISNVTA-CDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       163 ---------------~~~l~~~~~~~l~~-~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                                     ...+...+. .+.. ....++|+|-.++.+.  .....|.++++...      -...++++-++.
T Consensus       290 ~yae~lgipv~v~~d~~~L~~aL~-~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~------PdevlLVLsATt  362 (436)
T PRK11889        290 DYVKTIGFEVIAVRDEAAMTRALT-YFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVE------PDYICLTLSASM  362 (436)
T ss_pred             HHhhhcCCcEEecCCHHHHHHHHH-HHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcC------CCeEEEEECCcc
Confidence                           112222232 2222 3468999999999874  45667777776422      123455555567


Q ss_pred             ChHHHHHHHHH
Q psy1694         225 GGTEIMNTFLE  235 (247)
Q Consensus       225 g~~~i~~~~~~  235 (247)
                      +.+++.+.+..
T Consensus       363 k~~d~~~i~~~  373 (436)
T PRK11889        363 KSKDMIEIITN  373 (436)
T ss_pred             ChHHHHHHHHH
Confidence            77776655433

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=97.97  E-value=2.2e-05  Score=66.25  Aligned_cols=27  Identities=26%  Similarity=0.368  Sum_probs=19.8

Q ss_pred             CeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694         179 RAIFIFDEVDKFPKGLLDVIIPFIDHH  205 (247)
Q Consensus       179 ~~vlilDEiek~~~~~~~~Ll~~Le~~  205 (247)
                      .++||+||++.+.+.....++.-+.++
T Consensus       120 ~~~iIvDEaQN~t~~~~k~ilTR~g~~  146 (205)
T PF02562_consen  120 NAFIIVDEAQNLTPEELKMILTRIGEG  146 (205)
T ss_dssp             SEEEEE-SGGG--HHHHHHHHTTB-TT
T ss_pred             ceEEEEecccCCCHHHHHHHHcccCCC
Confidence            389999999999999988888877764

; GO: 0005524 ATP binding; PDB: 3B85_A.

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite

Probab=97.95  E-value=8.1e-07  Score=80.29  Aligned_cols=142  Identities=18%  Similarity=0.210  Sum_probs=71.9

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHHHhhhccc----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee
Q psy1694          70 RVLEEQLKQHVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH  145 (247)
Q Consensus        70 ~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~  145 (247)
                      ..|-+.+-..++|.+.++..+.=++-.......    ..+...++||.|.||||||.+.+.+++. .+   +   +-++.
T Consensus        16 ~~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~-~p---r---~v~~~   88 (331)
T PF00493_consen   16 DRLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKL-AP---R---SVYTS   88 (331)
T ss_dssp             HCCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT--S---S---EEEEE
T ss_pred             HHHHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhh-CC---c---eEEEC
Confidence            345556666899977765444322211111110    0124567999999999999999988443 22   1   11111


Q ss_pred             eecc---cccCC-CCChHHHHHHHHHHH--HHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccc------cC
Q psy1694         146 KFNS---RIHFP-NENHVSLYRLQLTNW--IISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQI------SF  213 (247)
Q Consensus       146 ~~~~---~l~~~-~~~~v~~~~~~l~~~--~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~------~~  213 (247)
                      ..-+   .+... .....+      .++  -.|.+-.+.+|++++||+|+|+.+..+.|..+||.+.+....      =-
T Consensus        89 g~~~s~~gLta~~~~d~~~------~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~  162 (331)
T PF00493_consen   89 GKGSSAAGLTASVSRDPVT------GEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLN  162 (331)
T ss_dssp             CCGSTCCCCCEEECCCGGT------SSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE
T ss_pred             CCCcccCCccceecccccc------ceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhccccc
Confidence            1000   00000 000000      001  014566788999999999999999999999999998754221      11


Q ss_pred             CceEEEEEeCC
Q psy1694         214 QNTIFLFLSNS  224 (247)
Q Consensus       214 ~~~ifI~tSN~  224 (247)
                      .++-++.++|-
T Consensus       163 ar~svlaa~NP  173 (331)
T PF00493_consen  163 ARCSVLAAANP  173 (331)
T ss_dssp             ---EEEEEE--
T ss_pred             chhhhHHHHhh
Confidence            24556666664

; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=97.95  E-value=0.00012  Score=59.37  Aligned_cols=113  Identities=12%  Similarity=0.157  Sum_probs=65.3

Q ss_pred             EEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccc--------------c---------cCCCCChHHHHHH--
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSR--------------I---------HFPNENHVSLYRL--  164 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~--------------l---------~~~~~~~v~~~~~--  164 (247)
                      +.+++++|.|||++|-.+|-...+   .|.+.-++.+.-+.              +         .+...........  
T Consensus         5 i~vy~g~G~Gkt~~a~g~~~ra~~---~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~   81 (159)
T cd00561           5 IQVYTGNGKGKTTAALGLALRALG---HGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAA   81 (159)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHH
Confidence            455667799999999999877666   55443333332110              0         0000111111111  


Q ss_pred             HHHHHHHHHHHhCCCeEEEEeCCCCC-Chh--hHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694         165 QLTNWIISNVTACDRAIFIFDEVDKF-PKG--LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT  232 (247)
Q Consensus       165 ~l~~~~~~~l~~~~~~vlilDEiek~-~~~--~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~  232 (247)
                      .........+....++++||||+..+ +.+  -.+.++.+|+.++       .+.-+|+|....++++-+.
T Consensus        82 ~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp-------~~~evIlTGr~~p~~l~e~  145 (159)
T cd00561          82 EGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP-------EDLELVLTGRNAPKELIEA  145 (159)
T ss_pred             HHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC-------CCCEEEEECCCCCHHHHHh
Confidence            11223344555667799999999655 322  2455777777765       6677899987777766543

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>KOG0478|consensus

Probab=97.93  E-value=9.2e-06  Score=78.14  Aligned_cols=125  Identities=18%  Similarity=0.199  Sum_probs=72.5

Q ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHhhhcccCC------CCCeEEEEeecCCChHHHHHHHHHHHhhcc-ccCCCCCcce
Q psy1694          72 LEEQLKQHVHGQELAISHICGALKNHFQNRYHN------TKALAISLHGLPGTGKNYVTDFIVSSIFKR-YKDKGTSRFV  144 (247)
Q Consensus        72 L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~------~kpl~lll~G~~GtGKt~~A~~la~~l~~~-~~~g~~~~~v  144 (247)
                      |...+...++|-++++.-+.=++-..  +..+.      +.-.++||+|.||||||.+.+.+++.+-.. +-.|..+.-|
T Consensus       423 La~SiAPsIye~edvKkglLLqLfGG--t~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSav  500 (804)
T KOG0478|consen  423 LARSIAPSIYELEDVKKGLLLQLFGG--TRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAV  500 (804)
T ss_pred             HHHhhchhhhcccchhhhHHHHHhcC--CcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchh
Confidence            34444446777776666554433221  11101      122579999999999999999998874210 0012222222


Q ss_pred             eeecccccCCCCChHHHHHHHHHHHH--HHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccc
Q psy1694         145 HKFNSRIHFPNENHVSLYRLQLTNWI--ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY  208 (247)
Q Consensus       145 ~~~~~~l~~~~~~~v~~~~~~l~~~~--~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~  208 (247)
                      -.....-..++.          +.++  .+++--.++|+-.|||+|||..+.++.|.++||..++.
T Consensus       501 GLTayVtrd~dt----------kqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvS  556 (804)
T KOG0478|consen  501 GLTAYVTKDPDT----------RQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLS  556 (804)
T ss_pred             cceeeEEecCcc----------ceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhh
Confidence            221111111111          1111  13444567799999999999999999999999987643

>KOG0735|consensus

Probab=97.93  E-value=3.9e-05  Score=74.37  Aligned_cols=74  Identities=18%  Similarity=0.173  Sum_probs=51.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  188 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie  188 (247)
                      +++|.||+|+|||.+++++.+.+..    ....-+..++|+++++..   ....+..+.+.+.+.+..+| ++++||++|
T Consensus       433 ~Ill~G~~GsGKT~L~kal~~~~~k----~~~~hv~~v~Cs~l~~~~---~e~iQk~l~~vfse~~~~~P-SiIvLDdld  504 (952)
T KOG0735|consen  433 NILLNGPKGSGKTNLVKALFDYYSK----DLIAHVEIVSCSTLDGSS---LEKIQKFLNNVFSEALWYAP-SIIVLDDLD  504 (952)
T ss_pred             cEEEeCCCCCCHhHHHHHHHHHhcc----ccceEEEEEechhccchh---HHHHHHHHHHHHHHHHhhCC-cEEEEcchh
Confidence            6899999999999999999998543    212223344588886543   34355555566655555544 899999998


Q ss_pred             CC
Q psy1694         189 KF  190 (247)
Q Consensus       189 k~  190 (247)
                      -+
T Consensus       505 ~l  506 (952)
T KOG0735|consen  505 CL  506 (952)
T ss_pred             hh
Confidence            76

>PF05729 NACHT: NACHT domain

Probab=97.91  E-value=0.00014  Score=57.74  Aligned_cols=25  Identities=20%  Similarity=0.433  Sum_probs=22.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +++++|++|+|||++++.++..+..
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~   26 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAE   26 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHh
Confidence            5789999999999999999998765

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.91  E-value=1.9e-05  Score=75.65  Aligned_cols=51  Identities=25%  Similarity=0.279  Sum_probs=41.8

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .++|++.+++.+++.++..+..-. . +...++|+||||+|||++|+.|++.+
T Consensus        77 d~yGlee~ieriv~~l~~Aa~gl~-~-~~~IL~LvGPpG~GKSsLa~~la~~l  127 (644)
T PRK15455         77 EFYGMEEAIEQIVSYFRHAAQGLE-E-KKQILYLLGPVGGGKSSLAERLKSLM  127 (644)
T ss_pred             cccCcHHHHHHHHHHHHHHHHhcC-C-CCceEEEecCCCCCchHHHHHHHHHH
Confidence            489999999999999976554433 2 23378999999999999999999975

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.88  E-value=6.7e-06  Score=67.31  Aligned_cols=23  Identities=26%  Similarity=0.499  Sum_probs=20.0

Q ss_pred             EEEeecCCChHHHHHHHHHHHhh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ++++|+||+||||+.+.+.+.+-
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l~   24 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEELK   24 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHhh
Confidence            68999999999999999998873

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.85  E-value=0.0006  Score=63.90  Aligned_cols=29  Identities=31%  Similarity=0.362  Sum_probs=25.7

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+|.+++|+|++|+|||+++..+|..+..
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~  121 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKK  121 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHH
Confidence            46888999999999999999999988654

>PHA02774 E1; Provisional

Probab=97.81  E-value=9.6e-05  Score=70.82  Aligned_cols=111  Identities=17%  Similarity=0.212  Sum_probs=66.0

Q ss_pred             HHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHH
Q psy1694          89 HICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTN  168 (247)
Q Consensus        89 ~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~  168 (247)
                      ....+++.++.+.  | |...++|+||||||||++|-+|.+.+.+   .  .-.|  +|.... |               
T Consensus       419 ~fl~~lk~~l~~~--P-Kknciv~~GPP~TGKS~fa~sL~~~L~G---~--vi~f--vN~~s~-F---------------  472 (613)
T PHA02774        419 SFLTALKDFLKGI--P-KKNCLVIYGPPDTGKSMFCMSLIKFLKG---K--VISF--VNSKSH-F---------------  472 (613)
T ss_pred             HHHHHHHHHHhcC--C-cccEEEEECCCCCCHHHHHHHHHHHhCC---C--EEEE--EECccc-c---------------
Confidence            3445556565332  2 3337999999999999999999888643   1  1112  232111 0               


Q ss_pred             HHHHHHHhCCCeEEEEeCCCCC-ChhhHHHHHhhcccCcccc------cccCCceEEEEEeCCChHH
Q psy1694         169 WIISNVTACDRAIFIFDEVDKF-PKGLLDVIIPFIDHHAVYN------QISFQNTIFLFLSNSGGTE  228 (247)
Q Consensus       169 ~~~~~l~~~~~~vlilDEiek~-~~~~~~~Ll~~Le~~~~~~------~~~~~~~ifI~tSN~g~~~  228 (247)
                      ++ +-+..+  .+++|||+-.- -..+...|+.+|+..++.-      .+......+|.|||.....
T Consensus       473 wL-qpl~d~--ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~  536 (613)
T PHA02774        473 WL-QPLADA--KIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKA  536 (613)
T ss_pred             cc-chhccC--CEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCccc
Confidence            11 223333  69999999222 1344557788888764322      2345556799999976543

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.81  E-value=0.0011  Score=58.35  Aligned_cols=50  Identities=22%  Similarity=0.252  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHhhhcc-----cCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694          84 ELAISHICGALKNHFQNR-----YHNTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus        84 ~~a~~~l~~~l~~~~~~~-----~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ....+.+.+.+...+...     ....+|.++.|.||+|+|||+++..+|..+..
T Consensus        44 ~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~   98 (272)
T TIGR00064        44 ELLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKK   98 (272)
T ss_pred             HHHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            445556666666544321     11345678889999999999999999988644

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=97.81  E-value=6e-05  Score=63.18  Aligned_cols=43  Identities=21%  Similarity=0.318  Sum_probs=29.3

Q ss_pred             CChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694          81 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus        81 ~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +|.+.-++.+.+.+...  ...      .++++||.|+|||++.+.+.+.+
T Consensus         2 ~gR~~el~~l~~~l~~~--~~~------~~~l~G~rg~GKTsLl~~~~~~~   44 (234)
T PF01637_consen    2 FGREKELEKLKELLESG--PSQ------HILLYGPRGSGKTSLLKEFINEL   44 (234)
T ss_dssp             -S-HHHHHHHHHCHHH----SS------EEEEEESTTSSHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhh--cCc------EEEEEcCCcCCHHHHHHHHHHHh
Confidence            56666666666555431  112      57889999999999999998875

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.81  E-value=0.0013  Score=61.26  Aligned_cols=120  Identities=11%  Similarity=0.138  Sum_probs=66.2

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc-------------cccCCCCChHHHHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS-------------RIHFPNENHVSLYRLQLTNWIIS  172 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~-------------~l~~~~~~~v~~~~~~l~~~~~~  172 (247)
                      ++.+++|.||+|+|||+++..+|......  .|...-++..+..             ....|... ..    .. ..+..
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~--~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~-~~----~~-~~l~~  293 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLH--MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYP-VK----DI-KKFKE  293 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHh--cCCeEEEecccchhhhHHHHHHHHHHhcCCCeee-hH----HH-HHHHH
Confidence            45678899999999999999999764220  2221112222110             00000000 00    01 12233


Q ss_pred             HHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHH
Q psy1694         173 NVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL  236 (247)
Q Consensus       173 ~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~  236 (247)
                      .+......+|++|=...++.  ...+.|..+++...   ..+....++++-++.+.+++.+....+
T Consensus       294 ~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~---~~~~~e~~LVLsAt~~~~~~~~~~~~f  356 (432)
T PRK12724        294 TLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFG---EKDSVENLLVLSSTSSYHHTLTVLKAY  356 (432)
T ss_pred             HHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhc---CCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence            34445668999998888763  45556655554310   001235678888888888887665433

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.81  E-value=2.3e-05  Score=66.79  Aligned_cols=90  Identities=13%  Similarity=0.116  Sum_probs=46.1

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee--eecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEE
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH--KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIF  182 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~--~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vl  182 (247)
                      ..|..++|+|+||+|||++|+.++...+--...+ +.....  .+......+.+...+.+.+.+. .+.  ....++.+|
T Consensus        10 ~~~~~~liyG~~G~GKtt~a~~~~~~~~~~~~d~-~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~-~~~--~~~~~ydtV   85 (220)
T TIGR01618        10 RIPNMYLIYGKPGTGKTSTIKYLPGKTLVLSFDM-SSKVLIGDENVDIADHDDMPPIQAMVEFYV-MQN--IQAVKYDNI   85 (220)
T ss_pred             CCCcEEEEECCCCCCHHHHHHhcCCCCEEEeccc-cchhccCCCCCceeecCCCCCHHHHHHHHH-HHH--hccccCCEE
Confidence            3466799999999999999999964211100011 000000  0011111222333343433332 111  123567999


Q ss_pred             EEeCCCCCChhhHHHH
Q psy1694         183 IFDEVDKFPKGLLDVI  198 (247)
Q Consensus       183 ilDEiek~~~~~~~~L  198 (247)
                      |+|+++.+...+...+
T Consensus        86 VIDsI~~l~~~~~~~~  101 (220)
T TIGR01618        86 VIDNISALQNLWLENI  101 (220)
T ss_pred             EEecHHHHHHHHHHHH
Confidence            9999988765443333

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.78  E-value=0.00059  Score=58.70  Aligned_cols=120  Identities=15%  Similarity=0.134  Sum_probs=80.5

Q ss_pred             cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChH
Q psy1694          80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV  159 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v  159 (247)
                      ++|-+...+.+.+-.++++.+..    ..++|++|.-|||||.+.+++.+....   ++.  ..|.++-..+.       
T Consensus        62 l~Gvd~qk~~L~~NT~~F~~G~p----ANnVLLwGaRGtGKSSLVKA~~~e~~~---~gl--rLVEV~k~dl~-------  125 (287)
T COG2607          62 LVGVDRQKEALVRNTEQFAEGLP----ANNVLLWGARGTGKSSLVKALLNEYAD---EGL--RLVEVDKEDLA-------  125 (287)
T ss_pred             HhCchHHHHHHHHHHHHHHcCCc----ccceEEecCCCCChHHHHHHHHHHHHh---cCC--eEEEEcHHHHh-------
Confidence            88988888888887777765432    235899999999999999999888655   443  36666533321       


Q ss_pred             HHHHHHHHHHHHHHHHhCCC-eEEEEeCCCCCC-hhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         160 SLYRLQLTNWIISNVTACDR-AIFIFDEVDKFP-KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       160 ~~~~~~l~~~~~~~l~~~~~-~vlilDEiek~~-~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                           .+. .+.+.++..+. -|+|.|+..--+ ......|+.+||.+- +  ..-.|++|-.|||.
T Consensus       126 -----~Lp-~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~v-e--~rP~NVl~YATSNR  183 (287)
T COG2607         126 -----TLP-DLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGV-E--GRPANVLFYATSNR  183 (287)
T ss_pred             -----hHH-HHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCc-c--cCCCeEEEEEecCC
Confidence                 111 23345555554 677778874333 355677778887642 1  12368999999996

>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins

Probab=97.76  E-value=0.0001  Score=61.95  Aligned_cols=91  Identities=18%  Similarity=0.234  Sum_probs=60.7

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFD  185 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilD  185 (247)
                      ...+++|.|+-|+|||+..+.|+...|.   ...            .....   +       +.. ..+..+  -++.+|
T Consensus        51 ~d~~lvl~G~QG~GKStf~~~L~~~~~~---d~~------------~~~~~---k-------d~~-~~l~~~--~iveld  102 (198)
T PF05272_consen   51 NDTVLVLVGKQGIGKSTFFRKLGPEYFS---DSI------------NDFDD---K-------DFL-EQLQGK--WIVELD  102 (198)
T ss_pred             CceeeeEecCCcccHHHHHHHHhHHhcc---Ccc------------ccCCC---c-------HHH-HHHHHh--HheeHH
Confidence            3457899999999999999999665444   110            00000   0       111 112222  478899


Q ss_pred             CCCCCChhhHHHHHhhcccCccccc--------ccCCceEEEEEeCC
Q psy1694         186 EVDKFPKGLLDVIIPFIDHHAVYNQ--------ISFQNTIFLFLSNS  224 (247)
Q Consensus       186 Eiek~~~~~~~~Ll~~Le~~~~~~~--------~~~~~~ifI~tSN~  224 (247)
                      |++.+...-++.|+.++.....+..        .--|+++||.|||.
T Consensus       103 El~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~  149 (198)
T PF05272_consen  103 ELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTND  149 (198)
T ss_pred             HHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCC
Confidence            9999998888999999987643311        14468899999996

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.75  E-value=0.00076  Score=61.92  Aligned_cols=122  Identities=12%  Similarity=0.123  Sum_probs=63.9

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcceeeecccccCCCCChHHHHH---HH---------HHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVHKFNSRIHFPNENHVSLYR---LQ---------LTNWIIS  172 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v~~~~~~l~~~~~~~v~~~~---~~---------l~~~~~~  172 (247)
                      ++-+++|.||+|+|||+++..||..+...  .|. ..-++..+...     .+.++..+   +.         ....+..
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~--~G~~~V~lit~D~~R-----~ga~EqL~~~a~~~gv~~~~~~~~~~l~~  208 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMR--FGASKVALLTTDSYR-----IGGHEQLRIFGKILGVPVHAVKDGGDLQL  208 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHh--cCCCeEEEEeccccc-----ccHHHHHHHHHHHcCCceEecCCcccHHH
Confidence            45578999999999999999999875321  221 11122221110     01111000   00         0001111


Q ss_pred             HHH-hCCCeEEEEeCCCCCChh-hHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHHHHc
Q psy1694         173 NVT-ACDRAIFIFDEVDKFPKG-LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKS  239 (247)
Q Consensus       173 ~l~-~~~~~vlilDEiek~~~~-~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~~~~  239 (247)
                      .+. .....+++||.++..+.+ .+...+..|....     .--+.++++-++.+.+.+++.+..+.+.
T Consensus       209 ~l~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~-----~~~~~lLVLsAts~~~~l~evi~~f~~~  272 (374)
T PRK14722        209 ALAELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGAD-----TPVQRLLLLNATSHGDTLNEVVQAYRSA  272 (374)
T ss_pred             HHHHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccC-----CCCeEEEEecCccChHHHHHHHHHHHHh
Confidence            122 234589999999988642 2222333332210     1124577777888999988877665543

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.75  E-value=0.0011  Score=61.88  Aligned_cols=112  Identities=18%  Similarity=0.220  Sum_probs=62.3

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccc-------------ccCC------CCChHHHHHHH
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSR-------------IHFP------NENHVSLYRLQ  165 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~-------------l~~~------~~~~v~~~~~~  165 (247)
                      .+|.+++|+|++|+||||++..||..+-.   .|...-.+..+...             ...|      ....+.    .
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~---~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~----i  170 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQR---KGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVK----I  170 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHH----H
Confidence            35778999999999999999999987644   44321122221100             0000      000000    0


Q ss_pred             HHHHHHHHHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHH
Q psy1694         166 LTNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM  230 (247)
Q Consensus       166 l~~~~~~~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~  230 (247)
                      ..+.+ .......+.+||+|=.++++.  .+...|..+.+.      ++-..+++++-+..|.+.++
T Consensus       171 ~~~~l-~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~------~~p~e~lLVlda~~Gq~a~~  230 (429)
T TIGR01425       171 ASEGV-EKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEA------IQPDNIIFVMDGSIGQAAEA  230 (429)
T ss_pred             HHHHH-HHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhh------cCCcEEEEEeccccChhHHH
Confidence            11122 223334679999999999875  455555544332      12235677777777766644

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=97.74  E-value=5.5e-05  Score=68.88  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=21.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++++.|.||||||.+|-.+++.+
T Consensus         3 v~~I~G~aGTGKTvla~~l~~~l   25 (352)
T PF09848_consen    3 VILITGGAGTGKTVLALNLAKEL   25 (352)
T ss_pred             EEEEEecCCcCHHHHHHHHHHHh
Confidence            67889999999999999999987

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.73  E-value=0.0014  Score=61.21  Aligned_cols=117  Identities=12%  Similarity=0.162  Sum_probs=64.1

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhh-ccccCCCCCcceeeeccc------c-------cCCCCChHHHHHHHHHHHHHH
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIF-KRYKDKGTSRFVHKFNSR------I-------HFPNENHVSLYRLQLTNWIIS  172 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~-~~~~~g~~~~~v~~~~~~------l-------~~~~~~~v~~~~~~l~~~~~~  172 (247)
                      +.+++|.||+|+|||+++..||..+. ..  .+...-++..+...      +       ..|.... . -...+...+. 
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~--~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~-~-~~~~l~~~l~-  295 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLY--GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVV-Y-DPKELAKALE-  295 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEcc-C-CHHhHHHHHH-
Confidence            34789999999999999999988754 20  22222222222100      0       0000000 0 0011122221 


Q ss_pred             HHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHH
Q psy1694         173 NVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE  235 (247)
Q Consensus       173 ~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~  235 (247)
                        ......+|++|..+..+.  ...+.|..+++...     .--+..+++.++.+..++.+....
T Consensus       296 --~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~-----~~~~~~LVl~a~~~~~~l~~~~~~  353 (424)
T PRK05703        296 --QLRDCDVILIDTAGRSQRDKRLIEELKALIEFSG-----EPIDVYLVLSATTKYEDLKDIYKH  353 (424)
T ss_pred             --HhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccC-----CCCeEEEEEECCCCHHHHHHHHHH
Confidence              123468999999988765  34556666666211     113567788888888888766533

>COG1485 Predicted ATPase [General function prediction only]

Probab=97.73  E-value=6.2e-05  Score=67.78  Aligned_cols=105  Identities=18%  Similarity=0.228  Sum_probs=55.7

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee--ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEE
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK--FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIF  184 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~--~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlil  184 (247)
                      |..+.++|+.|.|||++.-..=+.+-.   .  .+.-+|+  ++.+.|.......+ ..+-+.....+...  ...|+.|
T Consensus        65 ~~GlYl~GgVGrGKT~LMD~Fy~~lp~---~--~k~R~HFh~FM~~vH~~l~~l~g-~~dpl~~iA~~~~~--~~~vLCf  136 (367)
T COG1485          65 VRGLYLWGGVGRGKTMLMDLFYESLPG---E--RKRRLHFHRFMARVHQRLHTLQG-QTDPLPPIADELAA--ETRVLCF  136 (367)
T ss_pred             CceEEEECCCCccHHHHHHHHHhhCCc---c--ccccccHHHHHHHHHHHHHHHcC-CCCccHHHHHHHHh--cCCEEEe
Confidence            356899999999999999888555422   1  1121221  12111100000000 00000111111112  3479999


Q ss_pred             eCCCCCChh---hHHHHHhhcccCcccccccCCceEEEEEeCCChHH
Q psy1694         185 DEVDKFPKG---LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE  228 (247)
Q Consensus       185 DEiek~~~~---~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~  228 (247)
                      ||++--+..   ++..|+..|=.         +.++++.|||..++.
T Consensus       137 DEF~VtDI~DAMiL~rL~~~Lf~---------~GV~lvaTSN~~P~~  174 (367)
T COG1485         137 DEFEVTDIADAMILGRLLEALFA---------RGVVLVATSNTAPDN  174 (367)
T ss_pred             eeeeecChHHHHHHHHHHHHHHH---------CCcEEEEeCCCChHH
Confidence            999665543   45555555544         567899999998874

>PRK10867 signal recognition particle protein; Provisional

Probab=97.72  E-value=0.0017  Score=60.74  Aligned_cols=29  Identities=24%  Similarity=0.337  Sum_probs=25.4

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+|.+++++|++|+|||+++..+|..+..
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~  126 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKK  126 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence            35788999999999999999999988655

>KOG0736|consensus

Probab=97.71  E-value=0.0004  Score=68.09  Aligned_cols=145  Identities=21%  Similarity=0.236  Sum_probs=84.2

Q ss_pred             ccccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhccc-CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcc
Q psy1694          65 QSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRY-HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRF  143 (247)
Q Consensus        65 ~~~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~-~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~  143 (247)
                      +..+...++..+  ...+++..+..+++.+.....-.. ......++|+||+||+|||++.+++|.++.-        ++
T Consensus       390 lps~~~~l~n~~--~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~--------h~  459 (953)
T KOG0736|consen  390 LPSSLSTLWNSL--SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGL--------HL  459 (953)
T ss_pred             CChhhHHHhccC--CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCC--------ce
Confidence            444444444333  345666666555555543211000 0113336999999999999999999999533        68


Q ss_pred             eeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC--------hhhHHHHHhhcccCcccccccCCc
Q psy1694         144 VHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP--------KGLLDVIIPFIDHHAVYNQISFQN  215 (247)
Q Consensus       144 v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~--------~~~~~~Ll~~Le~~~~~~~~~~~~  215 (247)
                      +.++|.++-...++..+   ..+.... ...+.|+..++||-..|-+.        ..++..+...++..  ...-+...
T Consensus       460 ~evdc~el~~~s~~~~e---tkl~~~f-~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e--~~~~~~~~  533 (953)
T KOG0736|consen  460 LEVDCYELVAESASHTE---TKLQAIF-SRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNE--DFKFSCPP  533 (953)
T ss_pred             EeccHHHHhhcccchhH---HHHHHHH-HHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcc--cccCCCCc
Confidence            88888887655554433   1222233 44567777888877665542        23455555555510  01125567


Q ss_pred             eEEEEEeCCC
Q psy1694         216 TIFLFLSNSG  225 (247)
Q Consensus       216 ~ifI~tSN~g  225 (247)
                      .|||.+++.-
T Consensus       534 ~ivv~t~~s~  543 (953)
T KOG0736|consen  534 VIVVATTSSI  543 (953)
T ss_pred             eEEEEecccc
Confidence            8899887653

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=97.65  E-value=0.00011  Score=64.59  Aligned_cols=110  Identities=22%  Similarity=0.312  Sum_probs=59.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee--eecccccCCCCChHHHHHHHHHHHHHHHHHhC---------
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH--KFNSRIHFPNENHVSLYRLQLTNWIISNVTAC---------  177 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~--~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~---------  177 (247)
                      .++|.||+|||||.+++..-+.+.       ...+..  ++++..        . -...+...+...+.+.         
T Consensus        35 pvLl~G~~GtGKT~li~~~l~~l~-------~~~~~~~~~~~s~~--------T-ts~~~q~~ie~~l~k~~~~~~gP~~   98 (272)
T PF12775_consen   35 PVLLVGPSGTGKTSLIQNFLSSLD-------SDKYLVITINFSAQ--------T-TSNQLQKIIESKLEKRRGRVYGPPG   98 (272)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHCST-------TCCEEEEEEES-TT--------H-HHHHHHHCCCTTECECTTEEEEEES
T ss_pred             cEEEECCCCCchhHHHHhhhccCC-------ccccceeEeeccCC--------C-CHHHHHHHHhhcEEcCCCCCCCCCC
Confidence            579999999999999987633321       123222  222211        0 1111222221122221         


Q ss_pred             -CCeEEEEeCCCCCCh------hhHHHHHhhcccCccccc-----ccCCceEEEEEeCCCh--HHHHHHHH
Q psy1694         178 -DRAIFIFDEVDKFPK------GLLDVIIPFIDHHAVYNQ-----ISFQNTIFLFLSNSGG--TEIMNTFL  234 (247)
Q Consensus       178 -~~~vlilDEiek~~~------~~~~~Ll~~Le~~~~~~~-----~~~~~~ifI~tSN~g~--~~i~~~~~  234 (247)
                       ..-|+|+|++..-.+      .....|.++++.+.+-+.     ....++.|+.+.|-++  ..|+..++
T Consensus        99 ~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~  169 (272)
T PF12775_consen   99 GKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFL  169 (272)
T ss_dssp             SSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHH
T ss_pred             CcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHh
Confidence             126889999965432      356788888988764432     3666788898887532  23554443

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=97.65  E-value=9.8e-05  Score=72.15  Aligned_cols=124  Identities=16%  Similarity=0.194  Sum_probs=72.5

Q ss_pred             HHHHhhcCChHHHHHHHHHHHHHhhhcccCCC-----CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec
Q psy1694          74 EQLKQHVHGQELAISHICGALKNHFQNRYHNT-----KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN  148 (247)
Q Consensus        74 ~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~-----kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~  148 (247)
                      +.+...++|.+.++..+.=++-....... ++     .-.++|+.|.||||||.+.+.+++.. +   .   +-|+..-.
T Consensus       282 ~SiaPsIyG~e~VKkAilLqLfgGv~k~~-~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~a-P---r---~vytsgkg  353 (682)
T COG1241         282 KSIAPSIYGHEDVKKAILLQLFGGVKKNL-PDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLA-P---R---GVYTSGKG  353 (682)
T ss_pred             HHhcccccCcHHHHHHHHHHhcCCCcccC-CCCcccccceeEEEcCCCchhHHHHHHHHHhhC-C---c---eEEEcccc
Confidence            33444688988877666544432211111 11     12579999999999999999997763 2   1   11111111


Q ss_pred             ccccCCCCChHHHHHHHHHHH--HHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcc
Q psy1694         149 SRIHFPNENHVSLYRLQLTNW--IISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV  207 (247)
Q Consensus       149 ~~l~~~~~~~v~~~~~~l~~~--~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~  207 (247)
                      ++-.+-....+. ... ..+|  -.|++--+.+||..+||+|||+.....+|..+||..++
T Consensus       354 ss~~GLTAav~r-d~~-tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtI  412 (682)
T COG1241         354 SSAAGLTAAVVR-DKV-TGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTI  412 (682)
T ss_pred             ccccCceeEEEE-ccC-CCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEe
Confidence            111111110000 000 0011  11455567889999999999999999999999998764

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.63  E-value=0.00021  Score=58.36  Aligned_cols=24  Identities=29%  Similarity=0.301  Sum_probs=20.3

Q ss_pred             EEEeecCCChHHHHHHHHHHHhhc
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +++.||||+|||+++..++.....
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~   25 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLA   25 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH
Confidence            578999999999999888776544

A related protein is found in archaea.

>KOG0477|consensus

Probab=97.61  E-value=6.7e-05  Score=71.78  Aligned_cols=138  Identities=14%  Similarity=0.127  Sum_probs=81.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhh-cccCC---CCCeEEEEeecCCChHHHHHHHHHHHhhcc-ccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQ-NRYHN---TKALAISLHGLPGTGKNYVTDFIVSSIFKR-YKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~-~~~~~---~kpl~lll~G~~GtGKt~~A~~la~~l~~~-~~~g~~~~~v~~~~~~l~~  153 (247)
                      .++|-..++..+.-++-.... ++...   +--.++||+|.|||||+-..+.+++.-..+ .-.|..+.-|-+.+.....
T Consensus       450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~Kd  529 (854)
T KOG0477|consen  450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKD  529 (854)
T ss_pred             hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeC
Confidence            688888888877766654322 22100   112369999999999999999997762110 0012222222222222111


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccc------cCCceEEEEEeCC
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQI------SFQNTIFLFLSNS  224 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~------~~~~~ifI~tSN~  224 (247)
                      |..+.   |.     .-.+++--+.+||-+|||+|||...-...+-..||...+..+.      =..++.+|+++|-
T Consensus       530 PvtrE---WT-----LEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanP  598 (854)
T KOG0477|consen  530 PVTRE---WT-----LEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANP  598 (854)
T ss_pred             Cccce---ee-----eccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCC
Confidence            11111   11     0114556678899999999999998888888888876543321      1135668888885

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.58  E-value=0.0031  Score=56.83  Aligned_cols=143  Identities=13%  Similarity=0.119  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec----------
Q psy1694          84 ELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN----------  148 (247)
Q Consensus        84 ~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~----------  148 (247)
                      +...+.+.+.+...+....     .+.+|.++.|.||+|+|||+++..+|..+..   .+...-++..+.          
T Consensus        86 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~---~g~~V~Li~~D~~r~~a~eql~  162 (318)
T PRK10416         86 EELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKA---QGKKVLLAAGDTFRAAAIEQLQ  162 (318)
T ss_pred             HHHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHh---cCCeEEEEecCccchhhHHHHH
Confidence            3445555556655543111     0235678999999999999999999988654   332111111111          


Q ss_pred             --------ccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--hh---HHHHHhhcccCcccccccCCc
Q psy1694         149 --------SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--GL---LDVIIPFIDHHAVYNQISFQN  215 (247)
Q Consensus       149 --------~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--~~---~~~Ll~~Le~~~~~~~~~~~~  215 (247)
                              +....+.....   .......+. ......+.++++|=...++.  ..   +.++.++++. .  ....-..
T Consensus       163 ~~a~~~~i~~~~~~~~~dp---a~~v~~~l~-~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~-~--~~~~p~~  235 (318)
T PRK10416        163 VWGERVGVPVIAQKEGADP---ASVAFDAIQ-AAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKK-A--DPDAPHE  235 (318)
T ss_pred             HHHHHcCceEEEeCCCCCH---HHHHHHHHH-HHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhh-h--cCCCCce
Confidence                    00000000000   000011121 11235679999999999874  22   3344444332 0  0111135


Q ss_pred             eEEEEEeCCChHHHHHHHHHHH
Q psy1694         216 TIFLFLSNSGGTEIMNTFLELR  237 (247)
Q Consensus       216 ~ifI~tSN~g~~~i~~~~~~~~  237 (247)
                      +++++-++.|.+.+++. ..+.
T Consensus       236 ~~LVl~a~~g~~~~~~a-~~f~  256 (318)
T PRK10416        236 VLLVLDATTGQNALSQA-KAFH  256 (318)
T ss_pred             EEEEEECCCChHHHHHH-HHHH
Confidence            67888888888888763 4443

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=97.57  E-value=0.001  Score=59.32  Aligned_cols=41  Identities=22%  Similarity=0.300  Sum_probs=31.1

Q ss_pred             HHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694          92 GALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus        92 ~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +.+...+.++. ...|+++.+.|+=|+|||++.+.+-+.+-.
T Consensus         6 ~~la~~I~~~~-~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~   46 (325)
T PF07693_consen    6 KALAEIIKNPD-SDDPFVIGLYGEWGSGKSSFLNMLKEELKE   46 (325)
T ss_pred             HHHHHHHhccC-CCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            34444444443 367889999999999999999999888654

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.57  E-value=7.3e-05  Score=56.88  Aligned_cols=23  Identities=26%  Similarity=0.557  Sum_probs=20.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++++.|+||+||||+|+.|++.+
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            46899999999999999999984

...

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=97.55  E-value=0.0027  Score=52.99  Aligned_cols=42  Identities=19%  Similarity=0.255  Sum_probs=28.5

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH  152 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~  152 (247)
                      ..+|..+++.|+||+|||+++..+...+.       ...++.++..++-
T Consensus        12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~-------~~~~v~i~~D~~r   53 (199)
T PF06414_consen   12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG-------GGGIVVIDADEFR   53 (199)
T ss_dssp             -SS-EEEEEES-TTSTTHHHHHHHHHHT--------TT-SEEE-GGGGG
T ss_pred             ccCCEEEEEeCCCCCCHHHHHHHhhhhcc-------CCCeEEEehHHHH
Confidence            46898999999999999999999977641       2366777755543

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.52  E-value=0.0028  Score=60.62  Aligned_cols=123  Identities=10%  Similarity=0.154  Sum_probs=59.8

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc-------CCCCChHHHHHHHHHHHHHHHHHh-C
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH-------FPNENHVSLYRLQLTNWIISNVTA-C  177 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~-------~~~~~~v~~~~~~l~~~~~~~l~~-~  177 (247)
                      +.-++.|.||+|+|||+++..|+..+... ..+...-++..+.....       +...-.+.-+...-...+...+.. .
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~-~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~  427 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ-HAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR  427 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence            34478899999999999999998764330 00111122222211100       000000000000000112222222 3


Q ss_pred             CCeEEEEeCCCCCChh--hHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHH
Q psy1694         178 DRAIFIFDEVDKFPKG--LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL  236 (247)
Q Consensus       178 ~~~vlilDEiek~~~~--~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~  236 (247)
                      .+.+||+|.....+.+  ....|. .|....      ....++++.++.+..++.+.+..+
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~-~L~aa~------~~a~lLVLpAtss~~Dl~eii~~f  481 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLN-WLRAAR------QVTSLLVLPANAHFSDLDEVVRRF  481 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHH-HHHHhh------cCCcEEEEECCCChhHHHHHHHHH
Confidence            4689999999988653  222222 222111      124577788888877777655443

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA

Probab=97.50  E-value=0.00031  Score=70.05  Aligned_cols=87  Identities=11%  Similarity=0.085  Sum_probs=48.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccc------c---cCCCCChHHHHHHHHHHHHHHHHHhCCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSR------I---HFPNENHVSLYRLQLTNWIISNVTACDR  179 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~------l---~~~~~~~v~~~~~~l~~~~~~~l~~~~~  179 (247)
                      ..++.|++|||||++++.+.+.+-.   .|..   |....++      +   .+.....+..+   +...-.+.-.-.+.
T Consensus       370 ~~il~G~aGTGKTtll~~i~~~~~~---~g~~---V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~---~~~~~~~~~~~~~~  440 (744)
T TIGR02768       370 IAVVVGRAGTGKSTMLKAAREAWEA---AGYR---VIGAALSGKAAEGLQAESGIESRTLASL---EYAWANGRDLLSDK  440 (744)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHHHh---CCCe---EEEEeCcHHHHHHHHhccCCceeeHHHH---HhhhccCcccCCCC
Confidence            5788999999999999999777533   3321   2221100      0   01011111100   00000000011245


Q ss_pred             eEEEEeCCCCCChhhHHHHHhhccc
Q psy1694         180 AIFIFDEVDKFPKGLLDVIIPFIDH  204 (247)
Q Consensus       180 ~vlilDEiek~~~~~~~~Ll~~Le~  204 (247)
                      .+||+||+..++...+..|+.....
T Consensus       441 ~llIvDEasMv~~~~~~~Ll~~~~~  465 (744)
T TIGR02768       441 DVLVIDEAGMVGSRQMARVLKEAEE  465 (744)
T ss_pred             cEEEEECcccCCHHHHHHHHHHHHh
Confidence            8999999999999888888875443

This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.

>TIGR00959 ffh signal recognition particle protein

Probab=97.49  E-value=0.013  Score=54.88  Aligned_cols=28  Identities=21%  Similarity=0.277  Sum_probs=25.1

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+|.++++.|++|+|||+++..+|..+.
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~  124 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYYLK  124 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            4588899999999999999999998865

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG0480|consensus

Probab=97.46  E-value=0.00012  Score=70.25  Aligned_cols=136  Identities=17%  Similarity=0.163  Sum_probs=79.3

Q ss_pred             HHHhhcCChHHHHHHHHHHHHHhhhcccCCCC----CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccc
Q psy1694          75 QLKQHVHGQELAISHICGALKNHFQNRYHNTK----ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSR  150 (247)
Q Consensus        75 ~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~k----pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~  150 (247)
                      .|-..++|.+.++.-+.=++-.........+.    -.++++.|.|||||+-+.++...-  +   ++  +-|+.-+.+.
T Consensus       342 Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~f--s---PR--~vYtsGkaSS  414 (764)
T KOG0480|consen  342 SLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAF--S---PR--SVYTSGKASS  414 (764)
T ss_pred             hhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhcc--C---Cc--ceEecCcccc
Confidence            33346899998887766554432211110122    247999999999999999998654  3   11  2222222211


Q ss_pred             ccCCCC-----ChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         151 IHFPNE-----NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       151 l~~~~~-----~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                      --+-..     +.-+.|.-     -.+++--++.|+-.|||+|||+..-|.+|...||...+    +..|+-+++|-|.-
T Consensus       415 aAGLTaaVvkD~esgdf~i-----EAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtI----SIaKAGv~aTLnAR  485 (764)
T KOG0480|consen  415 AAGLTAAVVKDEESGDFTI-----EAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTI----SIAKAGVVATLNAR  485 (764)
T ss_pred             cccceEEEEecCCCCceee-----ecCcEEEccCceEEechhcccChHhHHHHHHHHHhhee----hheecceEEeecch
Confidence            111000     00011110     11455667889999999999999999999999998654    33455555555543


Q ss_pred             h
Q psy1694         226 G  226 (247)
Q Consensus       226 ~  226 (247)
                      .
T Consensus       486 t  486 (764)
T KOG0480|consen  486 T  486 (764)
T ss_pred             h
Confidence            3

>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1

Probab=97.46  E-value=0.0016  Score=57.72  Aligned_cols=117  Identities=13%  Similarity=0.199  Sum_probs=75.7

Q ss_pred             ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694          67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK  146 (247)
Q Consensus        67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~  146 (247)
                      -+.+..++...+.+.|.+...-.+.-++...+.... ...+..+-|+|++++|||+++++.+.. ++   .    |-   
T Consensus       154 Gtle~W~~~v~~~~~~n~~~~~~l~~afa~pLL~~l-~~~~~~~hl~G~Ss~GKTt~~~~a~Sv-~G---~----p~---  221 (286)
T PF06048_consen  154 GTLEEWQEMVAALAKGNPRLMLALCAAFAAPLLSLL-GVEGFGFHLYGQSSSGKTTALQLAASV-WG---N----PD---  221 (286)
T ss_pred             cCHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHh-CCCceEEEEEeCCCCCHHHHHHHhhhh-Cc---C----ch---
Confidence            456667777777788887776666566655443332 234567889999999999999888654 55   1    11   


Q ss_pred             ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694         147 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA  206 (247)
Q Consensus       147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~  206 (247)
                                +.+..|.. ..+.+...........++|||+...++.-...+...|-++.
T Consensus       222 ----------~l~~sw~~-T~n~le~~a~~~nd~~l~lDE~~~~~~~~~~~~iY~l~nG~  270 (286)
T PF06048_consen  222 ----------GLIRSWNS-TDNGLERTAAAHNDLPLVLDELSQADPKDVGSIIYMLANGQ  270 (286)
T ss_pred             ----------hhhhcchh-hHHHHHHHHHHcCCcceEehhccccchhHHHHHHHHHhCCC
Confidence                      11121221 23445455556667899999999998876666666666553

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.

>KOG1942|consensus

Probab=97.46  E-value=0.00038  Score=61.54  Aligned_cols=64  Identities=27%  Similarity=0.269  Sum_probs=45.6

Q ss_pred             HHhhcCChHHHHHH---HHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc
Q psy1694          76 LKQHVHGQELAISH---ICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI  151 (247)
Q Consensus        76 L~~~l~Gq~~a~~~---l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l  151 (247)
                      ....++||..|.+.   +++.++.......      .+||.||||||||.+|-+|++.|-+      ..||..+--++.
T Consensus        36 ~~~g~vGQ~~AReAagiivdlik~KkmaGr------avLlaGppgtGKTAlAlaisqELG~------kvPFcpmvgSEv  102 (456)
T KOG1942|consen   36 VAAGFVGQENAREAAGIIVDLIKSKKMAGR------AVLLAGPPGTGKTALALAISQELGP------KVPFCPMVGSEV  102 (456)
T ss_pred             cccccccchhhhhhhhHHHHHHHhhhccCc------EEEEecCCCCchhHHHHHHHHHhCC------CCCcccccchhh
Confidence            33468999988764   5555654333333      6899999999999999999998643      467765554554

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.43  E-value=0.0021  Score=54.21  Aligned_cols=24  Identities=29%  Similarity=0.531  Sum_probs=22.2

Q ss_pred             EEEeecCCChHHHHHHHHHHHhhc
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++|+|+||+|||+.|+-+|+.|-+
T Consensus         4 iIlTGyPgsGKTtfakeLak~L~~   27 (261)
T COG4088           4 IILTGYPGSGKTTFAKELAKELRQ   27 (261)
T ss_pred             EEEecCCCCCchHHHHHHHHHHHH
Confidence            678999999999999999999866

>KOG1970|consensus

Probab=97.43  E-value=0.0016  Score=61.86  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=22.1

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .++|++||+|||||++.+.|++.+
T Consensus       111 ~iLLltGPsGcGKSTtvkvLskel  134 (634)
T KOG1970|consen  111 RILLLTGPSGCGKSTTVKVLSKEL  134 (634)
T ss_pred             eEEEEeCCCCCCchhHHHHHHHhh
Confidence            478999999999999999999985

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.43  E-value=0.00037  Score=56.31  Aligned_cols=28  Identities=32%  Similarity=0.565  Sum_probs=25.4

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +|.++.|+|.||+|||++|+.+.+.|+.
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~   28 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFA   28 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5778999999999999999999999987

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>TIGR01448 recD_rel helicase, putative, RecD/TraA family

Probab=97.41  E-value=0.00094  Score=66.43  Aligned_cols=90  Identities=20%  Similarity=0.169  Sum_probs=50.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccc---------ccCCCCChHHHHHHHHHH---H-HHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSR---------IHFPNENHVSLYRLQLTN---W-IISNVT  175 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~---------l~~~~~~~v~~~~~~l~~---~-~~~~l~  175 (247)
                      .+++.|+||||||++++.+.+.+..   .+...+ +....++         ..+.+...   ....+..   . ......
T Consensus       340 ~~iitGgpGTGKTt~l~~i~~~~~~---~~~~~~-v~l~ApTg~AA~~L~e~~g~~a~T---ih~lL~~~~~~~~~~~~~  412 (720)
T TIGR01448       340 VVILTGGPGTGKTTITRAIIELAEE---LGGLLP-VGLAAPTGRAAKRLGEVTGLTAST---IHRLLGYGPDTFRHNHLE  412 (720)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHH---cCCCce-EEEEeCchHHHHHHHHhcCCcccc---HHHHhhccCCccchhhhh
Confidence            6788999999999999999887544   221011 2221111         00100000   1111100   0 000001


Q ss_pred             -hCCCeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694         176 -ACDRAIFIFDEVDKFPKGLLDVIIPFIDHH  205 (247)
Q Consensus       176 -~~~~~vlilDEiek~~~~~~~~Ll~~Le~~  205 (247)
                       ..+.++||+||+..++..+...|++.+..+
T Consensus       413 ~~~~~~llIvDEaSMvd~~~~~~Ll~~~~~~  443 (720)
T TIGR01448       413 DPIDCDLLIVDESSMMDTWLALSLLAALPDH  443 (720)
T ss_pred             ccccCCEEEEeccccCCHHHHHHHHHhCCCC
Confidence             123589999999999999999999988754

This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=97.40  E-value=0.00035  Score=63.29  Aligned_cols=52  Identities=21%  Similarity=0.300  Sum_probs=42.8

Q ss_pred             hhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694          78 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus        78 ~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ..++|-+.+++++++.++..+..-. .+|. +++|+||+|+|||++++.|.+.+
T Consensus        61 ~~~~G~~~~i~~lV~~fk~AA~g~~-~~kr-Il~L~GPvg~GKSsl~~~Lk~~l  112 (358)
T PF08298_consen   61 DEFYGMEETIERLVNYFKSAAQGLE-ERKR-ILLLLGPVGGGKSSLAELLKRGL  112 (358)
T ss_pred             ccccCcHHHHHHHHHHHHHHHhccC-ccce-EEEEECCCCCCHHHHHHHHHHHh
Confidence            4699999999999999987765443 3333 78999999999999999998774

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>PF05609 LAP1C: Lamina-associated polypeptide 1C (LAP1C); InterPro: IPR008662 This entry contains Rattus norvegicus LAP1C proteins and several uncharacterised highly related sequences from both Mus sp

Probab=97.39  E-value=0.0088  Score=56.10  Aligned_cols=163  Identities=13%  Similarity=0.171  Sum_probs=103.7

Q ss_pred             HHHHHHHHhhcCChHH-HHHHHHHHHHHhhhcccCC-CCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee
Q psy1694          70 RVLEEQLKQHVHGQEL-AISHICGALKNHFQNRYHN-TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF  147 (247)
Q Consensus        70 ~~L~~~L~~~l~Gq~~-a~~~l~~~l~~~~~~~~~~-~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~  147 (247)
                      ...-+.|+...-+|+. ..+.....+..++.... | .+|.+++|++.++.=+|  +++||..+...+..-.....+.++
T Consensus       251 ~~~~~~Lk~~fp~Q~~~lW~~~~~~l~~hln~~~-pr~qPavlll~a~~~a~~t--l~cLa~~lA~ays~~~~~~~~~Id  327 (465)
T PF05609_consen  251 QDQIEQLKDKFPSQDEELWKRSRTFLEKHLNASH-PRTQPAVLLLTAAQDAERT--LRCLAEQLADAYSSFRDVSAIRID  327 (465)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC-CCCCCeEEEEecCCCcchH--HHHHHHHHHHHHhhhcCCceEEec
Confidence            3344456667888874 45667777777877666 6 89999999988865555  677776654422121223344444


Q ss_pred             cccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEE------
Q psy1694         148 NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFL------  221 (247)
Q Consensus       148 ~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~t------  221 (247)
                      -..........   -+-.+...+...+..+. ...|+-.+|++|++..-.+.++=|.    +..-|.++.+|||      
T Consensus       328 g~~~~~~dsd~---vK~~vD~~l~~~f~~~~-~aavv~~~e~lpp~stlify~YCD~----enA~fK~~alilTv~l~~~  399 (465)
T PF05609_consen  328 GADKAHQDSDQ---VKLEVDNELSSGFENGQ-KAAVVHRFESLPPGSTLIFYKYCDH----ENAAFKDVALILTVLLEEE  399 (465)
T ss_pred             CccccccChHH---HHHHHHHHHHHHhhCCC-eeEEeehhhhCCCchhHHHHHhccC----CCccccceEEEEEEEeccc
Confidence            22221111222   23344556666666654 4555699999999987777777665    3457889999999      


Q ss_pred             ---eCCChHHHHHHHHHHHHcCccc
Q psy1694         222 ---SNSGGTEIMNTFLELRKSGERY  243 (247)
Q Consensus       222 ---SN~g~~~i~~~~~~~~~~g~~R  243 (247)
                         ++.+..++.+.+.++++....+
T Consensus       400 ~~~~~~~~~~~ee~v~d~l~~~~~~  424 (465)
T PF05609_consen  400 TLESSLSLKEVEEKVRDFLKAKFTS  424 (465)
T ss_pred             ccccccChHHHHHHHHHHHHHHhhc
Confidence               4566778999999988864443

and humans. Lamina-associated polypeptide 1s (LAP1s), also known as Torsin-1A-interacting protein 1, are type 2 integral membrane proteins with a single membrane-spanning region of the inner nuclear membrane []. LAP1s bind to both A- and B-type lamins and have a putative role in the membrane attachment and assembly of the nuclear lamina [].

>TIGR00708 cobA cob(I)alamin adenosyltransferase

Probab=97.39  E-value=0.0037  Score=51.35  Aligned_cols=113  Identities=8%  Similarity=0.121  Sum_probs=62.5

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee-----ccc-----------------ccCCCCChHH--H
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-----NSR-----------------IHFPNENHVS--L  161 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~-----~~~-----------------l~~~~~~~v~--~  161 (247)
                      +++ +.+++++|.|||++|-.+|-...+   .|.+.-++.+.     .++                 +.+.......  .
T Consensus         5 ~Gl-i~v~~g~GkGKtt~a~g~a~ra~~---~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~   80 (173)
T TIGR00708         5 RGI-IIVHTGNGKGKTTAAFGMALRALG---HGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTA   80 (173)
T ss_pred             ccE-EEEECCCCCChHHHHHHHHHHHHH---CCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHH
Confidence            444 455667999999999999887666   44322111111     011                 0111111111  0


Q ss_pred             HHHHHHHHHHHHHHhCCCeEEEEeCCC------CCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694         162 YRLQLTNWIISNVTACDRAIFIFDEVD------KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT  232 (247)
Q Consensus       162 ~~~~l~~~~~~~l~~~~~~vlilDEie------k~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~  232 (247)
                      .....-......+....+++|||||+.      -++.+   .++.+|+.++       .+.-+|+|-...++++-+.
T Consensus        81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~---~v~~lL~~rp-------~~~evVlTGR~~p~~l~e~  147 (173)
T TIGR00708        81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVE---EVVEALQERP-------GHQHVIITGRGCPQDLLEL  147 (173)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHH---HHHHHHHhCC-------CCCEEEEECCCCCHHHHHh
Confidence            111112234455556678999999995      45543   3556666655       5667899987766665543

Alternate name: corrinoid adenosyltransferase.

>KOG2227|consensus

Probab=97.39  E-value=0.0008  Score=62.73  Aligned_cols=134  Identities=16%  Similarity=0.215  Sum_probs=81.2

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCC-cceeeecccccCCCCC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS-RFVHKFNSRIHFPNEN  157 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~-~~v~~~~~~l~~~~~~  157 (247)
                      .+.|.+.-++.+.+.+..++...    ++..+.+.|.||||||.....+-..+-.    ...+ .-|++||-++.-+..-
T Consensus       151 ~l~gRe~e~~~v~~F~~~hle~~----t~gSlYVsG~PGtgkt~~l~rvl~~~~~----~~~~~~~v~inc~sl~~~~ai  222 (529)
T KOG2227|consen  151 TLKGRELEMDIVREFFSLHLELN----TSGSLYVSGQPGTGKTALLSRVLDSLSK----SSKSPVTVYINCTSLTEASAI  222 (529)
T ss_pred             CccchHHHHHHHHHHHHhhhhcc----cCcceEeeCCCCcchHHHHHHHHHhhhh----hcccceeEEEeeccccchHHH
Confidence            58899988888888887776543    5557889999999999988876444322    1233 3377887654222211


Q ss_pred             hHH---HH---------HHHHHHHHHHHHHhCC-CeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         158 HVS---LY---------RLQLTNWIISNVTACD-RAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       158 ~v~---~~---------~~~l~~~~~~~l~~~~-~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      +-+   .+         ..++...+........ -=++++||+|.+...-+..|..+++-..+    ..++.|.|..+|.
T Consensus       223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~l----p~sr~iLiGiANs  298 (529)
T KOG2227|consen  223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKL----PNSRIILIGIANS  298 (529)
T ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccC----Ccceeeeeeehhh
Confidence            100   01         0111223333333333 36778999999988777777777665432    2245566666553

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.36  E-value=0.0012  Score=55.30  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=21.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+++.||+|+|||++++++...+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            478899999999999999888764

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK13695 putative NTPase; Provisional

Probab=97.36  E-value=0.0023  Score=52.13  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=20.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      -+.|.|++|+|||++++.+++.+.
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~   25 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLK   25 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            368899999999999999987754

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=97.36  E-value=0.0018  Score=48.91  Aligned_cols=25  Identities=16%  Similarity=0.311  Sum_probs=21.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+++.||+|+|||+++-.++..+..
T Consensus         2 ~~~i~~~~G~GKT~~~~~~~~~~~~   26 (144)
T cd00046           2 DVLLAAPTGSGKTLAALLPILELLD   26 (144)
T ss_pred             CEEEECCCCCchhHHHHHHHHHHHh
Confidence            4688999999999999888887664

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=97.35  E-value=0.00053  Score=59.61  Aligned_cols=24  Identities=21%  Similarity=0.194  Sum_probs=21.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      -+++.||+|+|||++++.+++.+.
T Consensus        18 r~~I~G~~G~GKTTLlr~I~n~l~   41 (249)
T cd01128          18 RGLIVAPPKAGKTTLLQSIANAIT   41 (249)
T ss_pred             EEEEECCCCCCHHHHHHHHHhccc
Confidence            478899999999999999988753

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=97.35  E-value=0.0024  Score=54.13  Aligned_cols=23  Identities=13%  Similarity=0.159  Sum_probs=20.4

Q ss_pred             eEEEEeecCCChHHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ..++|+||.|+|||++.+.++..
T Consensus        30 ~~~~itGpNg~GKStlLk~i~~~   52 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVALI   52 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHHHH
Confidence            56889999999999999999853

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.33  E-value=0.011  Score=53.07  Aligned_cols=116  Identities=14%  Similarity=0.213  Sum_probs=69.0

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee------------------cccc---cCCCCChHHHH
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF------------------NSRI---HFPNENHVSLY  162 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~------------------~~~l---~~~~~~~v~~~  162 (247)
                      ..+|.+++|.|-.|+||||+.-.||+.+..   .|.+.-+..-+                  +.-+   .+.+|..+- |
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~---~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVa-f  211 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQ---QGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVA-F  211 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHH---CCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHH-H
Confidence            357999999999999999999999999765   44321111110                  0000   233333332 2


Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEeCCCCCChh--h---HHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694         163 RLQLTNWIISNVTACDRAIFIFDEVDKFPKG--L---LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT  232 (247)
Q Consensus       163 ~~~l~~~~~~~l~~~~~~vlilDEiek~~~~--~---~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~  232 (247)
                           +.+. .-.....+++++|=+++|+..  +   +.++.+++...- .+  .-...+.++=+.+|.+.++|.
T Consensus       212 -----DAi~-~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~-~~--ap~e~llvlDAttGqnal~QA  277 (340)
T COG0552         212 -----DAIQ-AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDD-PD--APHEILLVLDATTGQNALSQA  277 (340)
T ss_pred             -----HHHH-HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhcccc-CC--CCceEEEEEEcccChhHHHHH
Confidence                 2332 223446799999999999863  3   556666665421 00  112244444678888888764

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=97.32  E-value=0.00071  Score=61.96  Aligned_cols=43  Identities=23%  Similarity=0.411  Sum_probs=31.4

Q ss_pred             hHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694          83 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus        83 q~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      |..+.+.+.+++..        ..|..+.+.|+.|||||++.++|.+.+-+
T Consensus         6 Q~~~~~~v~~~~~~--------~~~~~~fv~G~~GtGKs~l~~~i~~~~~~   48 (364)
T PF05970_consen    6 QRRVFDTVIEAIEN--------EEGLNFFVTGPAGTGKSFLIKAIIDYLRS   48 (364)
T ss_pred             HHHHHHHHHHHHHc--------cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence            55555555555442        25568899999999999999999887533

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit

Probab=97.31  E-value=0.0028  Score=61.60  Aligned_cols=27  Identities=11%  Similarity=0.233  Sum_probs=24.0

Q ss_pred             CeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694         179 RAIFIFDEVDKFPKGLLDVIIPFIDHH  205 (247)
Q Consensus       179 ~~vlilDEiek~~~~~~~~Ll~~Le~~  205 (247)
                      ..+||+||+..++..+...|++.+..+
T Consensus       260 ~dvlIiDEaSMvd~~l~~~ll~al~~~  286 (586)
T TIGR01447       260 LDVLVVDEASMVDLPLMAKLLKALPPN  286 (586)
T ss_pred             ccEEEEcccccCCHHHHHHHHHhcCCC
Confidence            479999999999999999999988754

This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.31  E-value=0.0086  Score=48.52  Aligned_cols=25  Identities=32%  Similarity=0.375  Sum_probs=22.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++++.|+||+|||++++.++..+..
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~   26 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKK   26 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4688999999999999999988654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.31  E-value=0.0017  Score=55.53  Aligned_cols=26  Identities=27%  Similarity=0.360  Sum_probs=21.4

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +..+++.|+||+|||+++..++....
T Consensus        25 g~~~~i~G~~GsGKt~l~~~~~~~~~   50 (234)
T PRK06067         25 PSLILIEGDHGTGKSVLSQQFVYGAL   50 (234)
T ss_pred             CcEEEEECCCCCChHHHHHHHHHHHH
Confidence            33688899999999999999876533

>smart00487 DEXDc DEAD-like helicases superfamily

Probab=97.28  E-value=0.0025  Score=51.25  Aligned_cols=48  Identities=25%  Similarity=0.367  Sum_probs=27.4

Q ss_pred             CeEEEEeCCCCCCh-hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHH
Q psy1694         179 RAIFIFDEVDKFPK-GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF  233 (247)
Q Consensus       179 ~~vlilDEiek~~~-~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~  233 (247)
                      .+++|+||++.+++ .....+..++..-.       .+..+++.|.+..+......
T Consensus       130 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-------~~~~~v~~saT~~~~~~~~~  178 (201)
T smart00487      130 VDLVILDEAHRLLDGGFGDQLEKLLKLLP-------KNVQLLLLSATPPEEIENLL  178 (201)
T ss_pred             CCEEEEECHHHHhcCCcHHHHHHHHHhCC-------ccceEEEEecCCchhHHHHH
Confidence            46999999999997 44444444444221       23344555555545444443

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.27  E-value=0.0005  Score=65.78  Aligned_cols=50  Identities=14%  Similarity=0.204  Sum_probs=35.1

Q ss_pred             cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694          80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      |.-...-++.|...++.......   ....++|+||+|||||++.+.||+.+-
T Consensus        21 LavhkkKv~eV~~wl~~~~~~~~---~~~iLlLtGP~G~GKtttv~~La~elg   70 (519)
T PF03215_consen   21 LAVHKKKVEEVRSWLEEMFSGSS---PKRILLLTGPSGCGKTTTVKVLAKELG   70 (519)
T ss_pred             hhccHHHHHHHHHHHHHHhccCC---CcceEEEECCCCCCHHHHHHHHHHHhC
Confidence            33344455667777765443222   223788999999999999999999963

>KOG1514|consensus

Probab=97.27  E-value=0.0028  Score=61.74  Aligned_cols=138  Identities=17%  Similarity=0.249  Sum_probs=84.8

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCc--ceeeecccccCCCC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR--FVHKFNSRIHFPNE  156 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~--~v~~~~~~l~~~~~  156 (247)
                      .|-+.+.-.+.+...++.++....   -...+.+.|-||||||.+.+.+-+.|....+.+.-.+  |+++|.-.+..+..
T Consensus       397 sLpcRe~E~~~I~~f~~~~i~~~~---~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~  473 (767)
T KOG1514|consen  397 SLPCRENEFSEIEDFLRSFISDQG---LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPRE  473 (767)
T ss_pred             cccchhHHHHHHHHHHHhhcCCCC---CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHH
Confidence            466677777777777776665421   2336899999999999999999888764222333333  45555433333222


Q ss_pred             ChHHHHHH----------HHHHHHHHHHH----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694         157 NHVSLYRL----------QLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  222 (247)
Q Consensus       157 ~~v~~~~~----------~l~~~~~~~l~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS  222 (247)
                      -+..-|..          .+ ..+...+.    ...-.||++||.|.|-.--|+.|..+++....    .-.+.++|.++
T Consensus       474 ~Y~~I~~~lsg~~~~~~~al-~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~----~~sKLvvi~Ia  548 (767)
T KOG1514|consen  474 IYEKIWEALSGERVTWDAAL-EALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTL----KNSKLVVIAIA  548 (767)
T ss_pred             HHHHHHHhcccCcccHHHHH-HHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcC----CCCceEEEEec
Confidence            22221111          11 11112222    12238899999999988889999999887543    23678888888


Q ss_pred             CC
Q psy1694         223 NS  224 (247)
Q Consensus       223 N~  224 (247)
                      |+
T Consensus       549 NT  550 (767)
T KOG1514|consen  549 NT  550 (767)
T ss_pred             cc
Confidence            86

>PRK06696 uridine kinase; Validated

Probab=97.26  E-value=0.00053  Score=58.38  Aligned_cols=30  Identities=27%  Similarity=0.466  Sum_probs=26.6

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +.+|+.+.+.|++|+|||++|+.|++.+-.
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~   48 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKK   48 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            447889999999999999999999999754

>PRK13889 conjugal transfer relaxase TraA; Provisional

Probab=97.26  E-value=0.0013  Score=67.18  Aligned_cols=87  Identities=13%  Similarity=0.093  Sum_probs=47.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc------cc---cCCCCChHHHHHHHHHHHHHHHHHhCCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS------RI---HFPNENHVSLYRLQLTNWIISNVTACDR  179 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~------~l---~~~~~~~v~~~~~~l~~~~~~~l~~~~~  179 (247)
                      .+++.|++|||||++.+.+.+.+-.   .|.   -|....+      .+   .+.....+..+   +..+-.+.-.-.+.
T Consensus       364 v~vv~G~AGTGKTT~l~~~~~~~e~---~G~---~V~~~ApTGkAA~~L~e~tGi~a~TI~sl---l~~~~~~~~~l~~~  434 (988)
T PRK13889        364 LGVVVGYAGTGKSAMLGVAREAWEA---AGY---EVRGAALSGIAAENLEGGSGIASRTIASL---EHGWGQGRDLLTSR  434 (988)
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHH---cCC---eEEEecCcHHHHHHHhhccCcchhhHHHH---HhhhcccccccccC
Confidence            4679999999999999888666432   221   1221110      00   00000110000   00000000011234


Q ss_pred             eEEEEeCCCCCChhhHHHHHhhccc
Q psy1694         180 AIFIFDEVDKFPKGLLDVIIPFIDH  204 (247)
Q Consensus       180 ~vlilDEiek~~~~~~~~Ll~~Le~  204 (247)
                      .+||+||+..++...+..|++..+.
T Consensus       435 ~vlIVDEASMv~~~~m~~LL~~a~~  459 (988)
T PRK13889        435 DVLVIDEAGMVGTRQLERVLSHAAD  459 (988)
T ss_pred             cEEEEECcccCCHHHHHHHHHhhhh
Confidence            7999999999999998888876644

>PRK00131 aroK shikimate kinase; Reviewed

Probab=97.25  E-value=0.00028  Score=56.84  Aligned_cols=26  Identities=27%  Similarity=0.480  Sum_probs=23.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +|..++|+|+||+|||++|+.+|+.+
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l   28 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRL   28 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            34578999999999999999999985

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.24  E-value=0.0044  Score=51.66  Aligned_cols=29  Identities=24%  Similarity=0.487  Sum_probs=26.0

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+|..+.+.|++|+|||++|+.|+..++.
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~   50 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHE   50 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            46778999999999999999999998765

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.24  E-value=0.016  Score=54.99  Aligned_cols=119  Identities=13%  Similarity=0.173  Sum_probs=61.0

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcceeeecccccCCCCChH---HHHHHHH----------HHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVHKFNSRIHFPNENHV---SLYRLQL----------TNWII  171 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v~~~~~~l~~~~~~~v---~~~~~~l----------~~~~~  171 (247)
                      ++.++.|.||+|+||||++..||..+...  .|. .--++..+.     ...+..   ..|-+.+          .+...
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~--~G~~kV~LI~~Dt-----~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~  327 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARCVMR--HGASKVALLTTDS-----YRIGGHEQLRIYGKILGVPVHAVKDAADLRL  327 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHHHHh--cCCCeEEEEeCCc-----cchhHHHHHHHHHHHhCCCeeccCCchhHHH
Confidence            45689999999999999999999875321  221 111111111     000000   0010000          01111


Q ss_pred             HHHHhCCCeEEEEeCCCCCChhh-HHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHH
Q psy1694         172 SNVTACDRAIFIFDEVDKFPKGL-LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL  236 (247)
Q Consensus       172 ~~l~~~~~~vlilDEiek~~~~~-~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~  236 (247)
                      ..........+++|..+..+..- ....+..+....  .  . -+.++++-++.+...+.+....+
T Consensus       328 aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~--~--p-~e~~LVLdAt~~~~~l~~i~~~f  388 (484)
T PRK06995        328 ALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAG--A--P-VKRLLLLNATSHGDTLNEVVQAY  388 (484)
T ss_pred             HHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccC--C--C-CeeEEEEeCCCcHHHHHHHHHHh
Confidence            12222345799999998776432 222333333211  0  1 23577777788888887765444

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.23  E-value=0.00029  Score=55.03  Aligned_cols=23  Identities=30%  Similarity=0.548  Sum_probs=20.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++++.||||+|||++|+.+++.+
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~   23 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRL   23 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHS
T ss_pred             CEEEECCCCCCHHHHHHHHHHHC
Confidence            46889999999999999998773

...

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=97.23  E-value=0.00055  Score=57.96  Aligned_cols=87  Identities=20%  Similarity=0.267  Sum_probs=44.8

Q ss_pred             EEEeecCCChHHHHHHHHHHHhhccccCCCCCc-ceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR-FVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  188 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~-~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie  188 (247)
                      ++++|+||+|||+..+.+......   -...++ ........ ..+........    ..........+.+..+++||+.
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~v----~s~~~~~~~~~~~~~liiDE~~   72 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDRLV---VTVISPTIELYTEWL-PDPPSKSVRTV----DSFLKALVKPKSYDTLIIDEAQ   72 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhccc---cccccccceeccccc-cccCCccccEE----eEhhhcccccCcCCEEEEeccc
Confidence            367999999999999988776200   000011 11111100 00111100000    0111111122357899999999


Q ss_pred             CCChhhHHHHHhhccc
Q psy1694         189 KFPKGLLDVIIPFIDH  204 (247)
Q Consensus       189 k~~~~~~~~Ll~~Le~  204 (247)
                      .+|++....+......
T Consensus        73 ~~~~g~l~~l~~~~~~   88 (234)
T PF01443_consen   73 LLPPGYLLLLLSLSPA   88 (234)
T ss_pred             cCChHHHHHHHhhccC
Confidence            9999887776655443

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>PRK10875 recD exonuclease V subunit alpha; Provisional

Probab=97.22  E-value=0.0043  Score=60.62  Aligned_cols=26  Identities=15%  Similarity=0.326  Sum_probs=23.9

Q ss_pred             eEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694         180 AIFIFDEVDKFPKGLLDVIIPFIDHH  205 (247)
Q Consensus       180 ~vlilDEiek~~~~~~~~Ll~~Le~~  205 (247)
                      .++|+||+..++..+...|++.+..+
T Consensus       267 dvlIvDEaSMvd~~lm~~ll~al~~~  292 (615)
T PRK10875        267 DVLVVDEASMVDLPMMARLIDALPPH  292 (615)
T ss_pred             CeEEEChHhcccHHHHHHHHHhcccC
Confidence            79999999999999999999998764

>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=97.21  E-value=0.0072  Score=53.15  Aligned_cols=109  Identities=11%  Similarity=0.130  Sum_probs=62.7

Q ss_pred             cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChH
Q psy1694          80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV  159 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v  159 (247)
                      ++=-+.|++.+.+..+ .+..+.     -..+|.|.+|+||.++++..|.. .+       -.++.+..     ...-..
T Consensus        10 lVlf~~ai~hi~ri~R-vL~~~~-----Gh~LLvG~~GsGr~sl~rLaa~i-~~-------~~~~~i~~-----~~~y~~   70 (268)
T PF12780_consen   10 LVLFDEAIEHIARISR-VLSQPR-----GHALLVGVGGSGRQSLARLAAFI-CG-------YEVFQIEI-----TKGYSI   70 (268)
T ss_dssp             ----HHHHHHHHHHHH-HHCSTT-----EEEEEECTTTSCHHHHHHHHHHH-TT-------EEEE-TTT-----STTTHH
T ss_pred             eeeHHHHHHHHHHHHH-HHcCCC-----CCeEEecCCCccHHHHHHHHHHH-hc-------cceEEEEe-----eCCcCH
Confidence            4445667777765544 333221     15789999999999999966543 33       11222211     111123


Q ss_pred             HHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcc
Q psy1694         160 SLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV  207 (247)
Q Consensus       160 ~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~  207 (247)
                      ..|++.++..+...--+....+++++|-+-.++..++.+-.+|..|.+
T Consensus        71 ~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGei  118 (268)
T PF12780_consen   71 KDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEI  118 (268)
T ss_dssp             HHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-
T ss_pred             HHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCC
Confidence            456666666665433344558888899887777777777777777753

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=97.20  E-value=0.0015  Score=53.80  Aligned_cols=29  Identities=28%  Similarity=0.542  Sum_probs=26.9

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+|.++-|+|.+|.|||++|.++.+.|+.
T Consensus        21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~   49 (197)
T COG0529          21 QKGAVIWFTGLSGSGKSTIANALEEKLFA   49 (197)
T ss_pred             CCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            46778999999999999999999999988

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.20  E-value=0.0018  Score=60.02  Aligned_cols=81  Identities=11%  Similarity=0.244  Sum_probs=50.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhC--CCeEEEEeC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTAC--DRAIFIFDE  186 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~--~~~vlilDE  186 (247)
                      .+++.||-+||||++.+.+.+.+..        ..+.++..+.......        +.+.........  ....+||||
T Consensus        39 i~~i~GpR~~GKTtll~~l~~~~~~--------~~iy~~~~d~~~~~~~--------l~d~~~~~~~~~~~~~~yifLDE  102 (398)
T COG1373          39 IILILGPRQVGKTTLLKLLIKGLLE--------EIIYINFDDLRLDRIE--------LLDLLRAYIELKEREKSYIFLDE  102 (398)
T ss_pred             EEEEECCccccHHHHHHHHHhhCCc--------ceEEEEecchhcchhh--------HHHHHHHHHHhhccCCceEEEec
Confidence            7788999999999999888666432        2455553333221111        111121111111  447999999


Q ss_pred             CCCCChhhHHHHHhhcccCc
Q psy1694         187 VDKFPKGLLDVIIPFIDHHA  206 (247)
Q Consensus       187 iek~~~~~~~~Ll~~Le~~~  206 (247)
                      |+..+. .+..+..+.|.+.
T Consensus       103 Iq~v~~-W~~~lk~l~d~~~  121 (398)
T COG1373         103 IQNVPD-WERALKYLYDRGN  121 (398)
T ss_pred             ccCchh-HHHHHHHHHcccc
Confidence            999885 6678888888764

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.17  E-value=0.00038  Score=53.00  Aligned_cols=22  Identities=27%  Similarity=0.705  Sum_probs=20.3

Q ss_pred             EEEeecCCChHHHHHHHHHHHh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +++.|+||+|||++|+.|++.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999999984

...

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.16  E-value=0.00091  Score=52.64  Aligned_cols=41  Identities=17%  Similarity=0.216  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694          86 AISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus        86 a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ....+.+.+.+.+....      +++|.|+.|+|||++++.+++.+-
T Consensus         7 ~t~~l~~~l~~~l~~~~------~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150         7 AMDKFGKAFAKPLDFGT------VVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             HHHHHHHHHHHhCCCCC------EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            34455555555443333      789999999999999999999863

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated

Probab=97.16  E-value=0.0084  Score=50.02  Aligned_cols=114  Identities=9%  Similarity=0.054  Sum_probs=62.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee----------------------ccc-ccCCCCChHHH--HH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF----------------------NSR-IHFPNENHVSL--YR  163 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~----------------------~~~-l~~~~~~~v~~--~~  163 (247)
                      .+.++|++|.|||++|-.+|-...+   .|.+.-++.+.                      ++. +.+........  ..
T Consensus        24 ~v~v~~g~GkGKtt~a~g~a~ra~g---~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~  100 (191)
T PRK05986         24 LLIVHTGNGKGKSTAAFGMALRAVG---HGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA  100 (191)
T ss_pred             eEEEECCCCCChHHHHHHHHHHHHH---CCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence            5788999999999999999877665   44322211111                      111 01111111010  11


Q ss_pred             HHHHHHHHHHHHhCCCeEEEEeCCCCCCh-h--hHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694         164 LQLTNWIISNVTACDRAIFIFDEVDKFPK-G--LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT  232 (247)
Q Consensus       164 ~~l~~~~~~~l~~~~~~vlilDEiek~~~-~--~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~  232 (247)
                      ...-......+....+++|||||+-.+-. +  -.+.++.+|+.++       .+.-+|+|-...++++-+.
T Consensus       101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp-------~~~evVlTGR~~p~~Lie~  165 (191)
T PRK05986        101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARP-------GMQHVVITGRGAPRELIEA  165 (191)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCC-------CCCEEEEECCCCCHHHHHh
Confidence            11122334555666789999999943311 1  1334556666655       5667899977766665543

>PRK06762 hypothetical protein; Provisional

Probab=97.14  E-value=0.00042  Score=55.90  Aligned_cols=25  Identities=20%  Similarity=0.400  Sum_probs=22.7

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      |..+.++|+||+|||++|+.+++.+
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l   26 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERL   26 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5578899999999999999999885

>PLN03210 Resistant to P

Probab=97.12  E-value=0.0048  Score=64.55  Aligned_cols=27  Identities=19%  Similarity=0.362  Sum_probs=22.7

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ...++.++|++|+|||++|+++++.+.
T Consensus       206 ~~~vvgI~G~gGiGKTTLA~~l~~~l~  232 (1153)
T PLN03210        206 EVRMVGIWGSSGIGKTTIARALFSRLS  232 (1153)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence            344688999999999999999987753

syringae 6; Provisional

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.12  E-value=0.0093  Score=54.97  Aligned_cols=28  Identities=29%  Similarity=0.263  Sum_probs=24.0

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+.+++|.||+|+|||+++..+|..+..
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~  232 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLK  232 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4557899999999999999999987644

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=97.12  E-value=0.00059  Score=57.09  Aligned_cols=23  Identities=30%  Similarity=0.533  Sum_probs=17.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ..++.||||||||+++..+...+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            47889999999998777776665

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=97.09  E-value=0.0091  Score=48.99  Aligned_cols=28  Identities=25%  Similarity=0.490  Sum_probs=24.6

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +|..+.+.|++|+|||++|+.++..+..
T Consensus        17 ~~~~i~i~G~~GsGKstla~~l~~~l~~   44 (184)
T TIGR00455        17 RGVVIWLTGLSGSGKSTIANALEKKLES   44 (184)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5568899999999999999999988654

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>KOG2383|consensus

Probab=97.09  E-value=0.0016  Score=59.81  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=20.7

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHH
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIV  128 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la  128 (247)
                      +-|..+.++|..|||||++.-..=
T Consensus       112 ~~PkGlYlYG~VGcGKTmLMDlFy  135 (467)
T KOG2383|consen  112 GPPKGLYLYGSVGCGKTMLMDLFY  135 (467)
T ss_pred             CCCceEEEecccCcchhHHHHHHh
Confidence            347789999999999999998873

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.09  E-value=0.0087  Score=52.68  Aligned_cols=117  Identities=14%  Similarity=0.137  Sum_probs=64.7

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc-------------cccCCCCChHHHHHHHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS-------------RIHFPNENHVSLYRLQLTNWIISNV  174 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~-------------~l~~~~~~~v~~~~~~l~~~~~~~l  174 (247)
                      -.+.|.||+|+|||++++.++..+..   .+...-++..+-.             ...++.... . -...+...+. .+
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~---~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~-~~~~l~~~l~-~l  149 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-R-DEAAMTRALT-YF  149 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-C-CHHHHHHHHH-HH
Confidence            46899999999999999999888654   3322222222110             011110000 0 0112222232 23


Q ss_pred             Hh-CCCeEEEEeCCCCCC--hhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHH
Q psy1694         175 TA-CDRAIFIFDEVDKFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL  236 (247)
Q Consensus       175 ~~-~~~~vlilDEiek~~--~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~  236 (247)
                      .. ....++++|-..+.+  ...+..|..+++...      -..+++++-++..++++.+.+..+
T Consensus       150 ~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~------~~~~~LVl~a~~~~~d~~~~~~~f  208 (270)
T PRK06731        150 KEEARVDYILIDTAGKNYRASETVEEMIETMGQVE------PDYICLTLSASMKSKDMIEIITNF  208 (270)
T ss_pred             HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhC------CCeEEEEEcCccCHHHHHHHHHHh
Confidence            32 356999999999996  456666666655321      123455555677777776655443

>PRK08118 topology modulation protein; Reviewed

Probab=97.08  E-value=0.00048  Score=56.15  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             EEEeecCCChHHHHHHHHHHHh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +++.||||+||||+|+.|++.+
T Consensus         4 I~I~G~~GsGKSTlak~L~~~l   25 (167)
T PRK08118          4 IILIGSGGSGKSTLARQLGEKL   25 (167)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6889999999999999999885

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.08  E-value=0.0065  Score=52.10  Aligned_cols=25  Identities=20%  Similarity=0.345  Sum_probs=19.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+++.||+|+|||++|..++..+..
T Consensus        26 ~~~i~G~~G~GKTtl~~~~~~~~~~   50 (230)
T PRK08533         26 LILIEGDESTGKSILSQRLAYGFLQ   50 (230)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            6889999999999998655555444

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.08  E-value=0.00064  Score=55.45  Aligned_cols=29  Identities=21%  Similarity=0.382  Sum_probs=25.5

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+|..+.|.|++|+|||++|+.+++.+..
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~   33 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKL   33 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            36678999999999999999999998754

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=97.07  E-value=0.003  Score=57.40  Aligned_cols=24  Identities=25%  Similarity=0.337  Sum_probs=21.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+++.||+|+|||++.+++.+.+.
T Consensus       124 ~ili~G~tGSGKTT~l~al~~~i~  147 (343)
T TIGR01420       124 LILVTGPTGSGKSTTLASMIDYIN  147 (343)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhC
Confidence            588999999999999999988754

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=97.06  E-value=0.0013  Score=58.57  Aligned_cols=27  Identities=19%  Similarity=0.347  Sum_probs=25.2

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+|+.+++.|++|+|||++|+.||+.+
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l  116 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRL  116 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999999999986

>PRK08233 hypothetical protein; Provisional

Probab=97.05  E-value=0.00052  Score=55.83  Aligned_cols=26  Identities=23%  Similarity=0.441  Sum_probs=23.2

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++.++.+.|+||+||||+|+.|++++
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l   27 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKL   27 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhC
Confidence            45678899999999999999999985

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.03  E-value=0.0073  Score=50.63  Aligned_cols=24  Identities=21%  Similarity=0.173  Sum_probs=21.0

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ..+.++||+|+|||++.+.|+-..
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHHHH
Confidence            368899999999999999998654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.03  E-value=0.052  Score=54.19  Aligned_cols=119  Identities=15%  Similarity=0.142  Sum_probs=61.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcceeeecc------------cccCCCCChHHHHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVHKFNS------------RIHFPNENHVSLYRLQLTNWIIS  172 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v~~~~~------------~l~~~~~~~v~~~~~~l~~~~~~  172 (247)
                      ++.++.|.||+|+||||++..||..+...  .|. ...++..+..            +..+.+...+.. ...+...+. 
T Consensus       184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~--~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~-~~~l~~al~-  259 (767)
T PRK14723        184 QGGVLALVGPTGVGKTTTTAKLAARCVAR--EGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKD-AADLRFALA-  259 (767)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHhhHHHH--cCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCC-HHHHHHHHH-
Confidence            35689999999999999999998775220  221 1111111110            000000000000 111222221 


Q ss_pred             HHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHH
Q psy1694         173 NVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL  236 (247)
Q Consensus       173 ~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~  236 (247)
                      .+  ..+.+|++|=.+..+.  .+...+..+.+..      .-.+.++++-++.+.+.+++.+..+
T Consensus       260 ~~--~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~------~p~e~~LVLsAt~~~~~l~~i~~~f  317 (767)
T PRK14723        260 AL--GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVG------RPVRRLLLLNAASHGDTLNEVVHAY  317 (767)
T ss_pred             Hh--cCCCEEEEeCCCCCccCHHHHHHHHHHhccC------CCCeEEEEECCCCcHHHHHHHHHHH
Confidence            12  2458999999998874  3333333333321      1134566666777788887665443

>PF13479 AAA_24: AAA domain

Probab=97.02  E-value=0.0007  Score=57.30  Aligned_cols=86  Identities=16%  Similarity=0.251  Sum_probs=44.8

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCC-cceeeecccccCCCCChHHHHHHHHHHHHHHHH-HhCCCeEEE
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS-RFVHKFNSRIHFPNENHVSLYRLQLTNWIISNV-TACDRAIFI  183 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~-~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l-~~~~~~vli  183 (247)
                      +|..++++|+||+|||++|..+-+.++-.-+.|..+ +... +...   .+   +..|.+ +.+.+...- ...++.+||
T Consensus         2 ~~~~~lIyG~~G~GKTt~a~~~~k~l~id~E~g~~~~~~~~-~~~~---i~---i~s~~~-~~~~~~~l~~~~~~y~tiV   73 (213)
T PF13479_consen    2 KPIKILIYGPPGSGKTTLAASLPKPLFIDTENGSDSLKFLD-DGDV---IP---ITSWED-FLEALDELEEDEADYDTIV   73 (213)
T ss_pred             CceEEEEECCCCCCHHHHHHhCCCeEEEEeCCCccchhhhc-CCCe---eC---cCCHHH-HHHHHHHHHhccCCCCEEE
Confidence            566799999999999999998844433211122100 0000 0000   00   112322 122221111 245789999


Q ss_pred             EeCCCCCChhhHHHHH
Q psy1694         184 FDEVDKFPKGLLDVII  199 (247)
Q Consensus       184 lDEiek~~~~~~~~Ll  199 (247)
                      ||.++.+-.-+...+.
T Consensus        74 IDsis~~~~~~~~~~~   89 (213)
T PF13479_consen   74 IDSISWLEDMCLEYIC   89 (213)
T ss_pred             EECHHHHHHHHHHHHh
Confidence            9999877555544444

>PF13245 AAA_19: Part of AAA domain

Probab=97.02  E-value=0.00091  Score=47.41  Aligned_cols=23  Identities=30%  Similarity=0.510  Sum_probs=17.0

Q ss_pred             EEEEeecCCChHH-HHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKN-YVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt-~~A~~la~~l  131 (247)
                      .+++.|||||||| ++++.+++.+
T Consensus        12 ~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   12 LFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            4667999999999 5556665554

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.02  E-value=0.006  Score=50.99  Aligned_cols=25  Identities=16%  Similarity=0.091  Sum_probs=21.3

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      -.+.++||.|+|||++.+.|+...+
T Consensus        30 ~~~~l~G~Ng~GKStll~~i~~~~~   54 (202)
T cd03243          30 RLLLITGPNMGGKSTYLRSIGLAVL   54 (202)
T ss_pred             eEEEEECCCCCccHHHHHHHHHHHH
Confidence            3688999999999999999985543

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>TIGR00767 rho transcription termination factor Rho

Probab=97.00  E-value=0.0022  Score=59.26  Aligned_cols=23  Identities=22%  Similarity=0.205  Sum_probs=20.8

Q ss_pred             EEEeecCCChHHHHHHHHHHHhh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +++.||+|+|||++++.+++.+.
T Consensus       171 ~~IvG~~g~GKTtL~~~i~~~I~  193 (415)
T TIGR00767       171 GLIVAPPKAGKTVLLQKIAQAIT  193 (415)
T ss_pred             EEEECCCCCChhHHHHHHHHhhc
Confidence            78899999999999999988853

Members of this family differ in the specificity of RNA binding.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.99  E-value=0.026  Score=46.57  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=21.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+++.||+|+|||++.+++...+
T Consensus        27 ~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          27 NILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            68999999999999999998774

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=96.98  E-value=0.0016  Score=57.84  Aligned_cols=40  Identities=15%  Similarity=0.195  Sum_probs=29.7

Q ss_pred             HHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694          92 GALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus        92 ~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .....++.... .++|..+-+.||+|+||||+|+.|...+.
T Consensus        48 ~~~~~f~~~~~-~~~p~IIGIaG~~GSGKSTlar~L~~ll~   87 (290)
T TIGR00554        48 AVLEQFLGTNG-AKIPYIISIAGSVAVGKSTTARILQALLS   87 (290)
T ss_pred             HHHHHHHhccc-CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            33334443332 56888999999999999999999987754

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK05439 pantothenate kinase; Provisional

Probab=96.98  E-value=0.0021  Score=57.68  Aligned_cols=41  Identities=15%  Similarity=0.259  Sum_probs=30.7

Q ss_pred             HHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694          90 ICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus        90 l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +...+..++..+. .++|.++.+.|+||+|||++|+.|++.+
T Consensus        70 ~~~~~~~fl~~~~-~~~~~iIgIaG~~gsGKSTla~~L~~~l  110 (311)
T PRK05439         70 LQAALEQFLGKNG-QKVPFIIGIAGSVAVGKSTTARLLQALL  110 (311)
T ss_pred             HHHHHHHHhcccC-CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3333444444333 5688899999999999999999998875

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=96.98  E-value=0.0021  Score=56.03  Aligned_cols=100  Identities=19%  Similarity=0.266  Sum_probs=53.3

Q ss_pred             HHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee-cccccCCCCC--------h
Q psy1694          88 SHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-NSRIHFPNEN--------H  158 (247)
Q Consensus        88 ~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~-~~~l~~~~~~--------~  158 (247)
                      +.+.+.+........      ++++.||+|+|||++++++.+.+-.   .  ....+.+- ..++..+.+.        .
T Consensus       114 ~~~~~~l~~~v~~~~------~ili~G~tGSGKTT~l~all~~i~~---~--~~~iv~iEd~~E~~l~~~~~~~~~~~~~  182 (270)
T PF00437_consen  114 EEIAEFLRSAVRGRG------NILISGPTGSGKTTLLNALLEEIPP---E--DERIVTIEDPPELRLPGPNQIQIQTRRD  182 (270)
T ss_dssp             HHHHHHHHHCHHTTE------EEEEEESTTSSHHHHHHHHHHHCHT---T--TSEEEEEESSS-S--SCSSEEEEEEETT
T ss_pred             HHHHHHHhhccccce------EEEEECCCccccchHHHHHhhhccc---c--ccceEEeccccceeecccceEEEEeecC
Confidence            445555554444444      7899999999999999999887544   2  11222221 2222222211        1


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694         159 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA  206 (247)
Q Consensus       159 v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~  206 (247)
                      ...|.+    .+...+ +...++++++|+-..  ..... +...+.|.
T Consensus       183 ~~~~~~----~l~~~L-R~~pD~iiigEiR~~--e~~~~-~~a~~tGh  222 (270)
T PF00437_consen  183 EISYED----LLKSAL-RQDPDVIIIGEIRDP--EAAEA-IQAANTGH  222 (270)
T ss_dssp             TBSHHH----HHHHHT-TS--SEEEESCE-SC--HHHHH-HHHHHTT-
T ss_pred             cccHHH----HHHHHh-cCCCCcccccccCCH--hHHHH-HHhhccCC
Confidence            111332    333333 445589999999753  44455 66777653

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.97  E-value=0.028  Score=52.55  Aligned_cols=118  Identities=14%  Similarity=0.121  Sum_probs=60.6

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhccccCC-CCCcceeeeccc------------ccC-CCCChHHHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-GTSRFVHKFNSR------------IHF-PNENHVSLYRLQLTNWII  171 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g-~~~~~v~~~~~~------------l~~-~~~~~v~~~~~~l~~~~~  171 (247)
                      ++-.+.|.||+|+|||++...||......  .+ ....++..+...            +.+ +.. .+.. ...+...+ 
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~--~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~-~v~~-~~dl~~al-  264 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIR--HGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR-SIKD-IADLQLML-  264 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHh--cCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee-cCCC-HHHHHHHH-
Confidence            44578999999999999999998753210  11 111222222111            100 000 0000 01111111 


Q ss_pred             HHHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHH
Q psy1694         172 SNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL  236 (247)
Q Consensus       172 ~~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~  236 (247)
                        .......++++|..+..+.  .+...|..+.....      --+.++++-++.+.+.+.+....+
T Consensus       265 --~~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~------~~~~~LVl~at~~~~~~~~~~~~f  323 (420)
T PRK14721        265 --HELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGT------QVKHLLLLNATSSGDTLDEVISAY  323 (420)
T ss_pred             --HHhcCCCEEEecCCCCCcchHHHHHHHHHHhccCC------CceEEEEEcCCCCHHHHHHHHHHh
Confidence              1223458999999987763  33344433322111      134567777788888887665433

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=96.97  E-value=0.0032  Score=60.88  Aligned_cols=37  Identities=8%  Similarity=0.210  Sum_probs=29.7

Q ss_pred             CeEEEEeCC-CCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694         179 RAIFIFDEV-DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  222 (247)
Q Consensus       179 ~~vlilDEi-ek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS  222 (247)
                      ...+||||. +.++++..+.+.+.+++.       ...+++|-++
T Consensus       534 P~~v~LDEATsALDe~~e~~l~q~l~~~-------lp~~tvISV~  571 (604)
T COG4178         534 PKWVFLDEATSALDEETEDRLYQLLKEE-------LPDATVISVG  571 (604)
T ss_pred             CCEEEEecchhccChHHHHHHHHHHHhh-------CCCCEEEEec
Confidence            489999999 778999999999999983       2456666665

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.92  E-value=0.00094  Score=56.03  Aligned_cols=27  Identities=30%  Similarity=0.489  Sum_probs=24.7

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+|..+.+.|++|+||||+++.|++.+
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            477889999999999999999999985

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=96.92  E-value=0.00071  Score=54.79  Aligned_cols=23  Identities=35%  Similarity=0.702  Sum_probs=21.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||||+|||++|+.||+++
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~   24 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHL   24 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHh
Confidence            46788999999999999999995

>PRK03839 putative kinase; Provisional

Probab=96.91  E-value=0.00081  Score=55.04  Aligned_cols=23  Identities=30%  Similarity=0.697  Sum_probs=20.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+++.|+||+|||++++.||+.+
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~   24 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999999984

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=96.90  E-value=0.02  Score=52.83  Aligned_cols=115  Identities=15%  Similarity=0.228  Sum_probs=60.7

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhh-ccccCCCCCcceeeecccccCCCCChHHHHHH-------------HHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIF-KRYKDKGTSRFVHKFNSRIHFPNENHVSLYRL-------------QLTNWII  171 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~-~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~-------------~l~~~~~  171 (247)
                      ++.++.|.||+|+||||+.-.||.... ..  ....-.++..+.-++...+  ....|-+             .+...+ 
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~--~~~kVaiITtDtYRIGA~E--QLk~Ya~im~vp~~vv~~~~el~~ai-  276 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLK--KKKKVAIITTDTYRIGAVE--QLKTYADIMGVPLEVVYSPKELAEAI-  276 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhc--cCcceEEEEeccchhhHHH--HHHHHHHHhCCceEEecCHHHHHHHH-
Confidence            355899999999999998877776643 10  1122234444432221000  0011111             122223 


Q ss_pred             HHHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHH
Q psy1694         172 SNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF  233 (247)
Q Consensus       172 ~~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~  233 (247)
                      ..+..|  .+|++|=+++-+.  .....|..+++...     + -+..+++.+|.-.+++.+..
T Consensus       277 ~~l~~~--d~ILVDTaGrs~~D~~~i~el~~~~~~~~-----~-i~~~Lvlsat~K~~dlkei~  332 (407)
T COG1419         277 EALRDC--DVILVDTAGRSQYDKEKIEELKELIDVSH-----S-IEVYLVLSATTKYEDLKEII  332 (407)
T ss_pred             HHhhcC--CEEEEeCCCCCccCHHHHHHHHHHHhccc-----c-ceEEEEEecCcchHHHHHHH
Confidence            334444  8999999988764  44566666666531     1 22344555555555555443

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=96.88  E-value=0.00074  Score=55.19  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++++.|+||+|||++|+.||+.+
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~   23 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENF   23 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc
Confidence            36889999999999999999873

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=96.88  E-value=0.0069  Score=54.57  Aligned_cols=115  Identities=17%  Similarity=0.185  Sum_probs=59.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee-ecccccCCCCChHHH---HHHHHHHHHHHHHHhCCCeEEEE
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK-FNSRIHFPNENHVSL---YRLQLTNWIISNVTACDRAIFIF  184 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~-~~~~l~~~~~~~v~~---~~~~l~~~~~~~l~~~~~~vlil  184 (247)
                      ++++.|++|+|||++++++...+..   .......+.+ +..++..+.+..+..   ....+.+.+...+ +...+.+++
T Consensus       150 ~ilI~G~tGSGKTTll~aL~~~~~~---~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aL-R~~PD~Iiv  225 (319)
T PRK13894        150 NILVIGGTGSGKTTLVNAIINEMVI---QDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTL-RMRPDRILV  225 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhhh---cCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHh-cCCCCEEEE
Confidence            6899999999999999999877532   0001112211 123332222111100   0001233444444 344588899


Q ss_pred             eCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHHHH
Q psy1694         185 DEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRK  238 (247)
Q Consensus       185 DEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~~~  238 (247)
                      .|+-.  ++..+ +++.+..+.       .-++.-+-+|...+.+.+. ..+.+
T Consensus       226 GEiR~--~Ea~~-~l~A~~tGh-------~G~~tTiHa~s~~~ai~Rl-~~l~~  268 (319)
T PRK13894        226 GEVRG--PEALD-LLMAWNTGH-------EGGAATLHANNAKAGLDRL-KSLIS  268 (319)
T ss_pred             eccCC--HHHHH-HHHHHHcCC-------CceEEEECCCCHHHHHHHH-HHHHh
Confidence            99965  33433 566776653       2234444456666666654 34444

>PRK06547 hypothetical protein; Provisional

Probab=96.87  E-value=0.0011  Score=54.39  Aligned_cols=27  Identities=15%  Similarity=0.364  Sum_probs=23.6

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ..|..+.+.|++|+|||++|+.+++.+
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~   39 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAART   39 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            356678899999999999999999873

>PLN02200 adenylate kinase family protein

Probab=96.87  E-value=0.0011  Score=57.18  Aligned_cols=27  Identities=26%  Similarity=0.394  Sum_probs=23.9

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +..|..+++.|+||+|||++|+.|++.
T Consensus        40 ~~~~~ii~I~G~PGSGKsT~a~~La~~   66 (234)
T PLN02200         40 EKTPFITFVLGGPGSGKGTQCEKIVET   66 (234)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            345778899999999999999999987

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=96.87  E-value=0.0023  Score=55.25  Aligned_cols=23  Identities=35%  Similarity=0.592  Sum_probs=21.0

Q ss_pred             EEEeecCCChHHHHHHHHHHHhh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ++|+|+||+|||++|+.+++.+.
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~   24 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLS   24 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999864

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=96.87  E-value=0.003  Score=54.28  Aligned_cols=91  Identities=16%  Similarity=0.109  Sum_probs=50.2

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee-----e-cccccCCCCCh----HHHH----HHHH-HHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK-----F-NSRIHFPNENH----VSLY----RLQL-TNWIIS  172 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~-----~-~~~l~~~~~~~----v~~~----~~~l-~~~~~~  172 (247)
                      ++.++.||||||||++.|=||+.+.    .+. +.|.+.     + -+++.+...+.    .+.-    ..-. ..-+..
T Consensus       138 lntLiigpP~~GKTTlLRdiaR~~s----~g~-~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmm  212 (308)
T COG3854         138 LNTLIIGPPQVGKTTLLRDIARLLS----DGI-NQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMM  212 (308)
T ss_pred             eeeEEecCCCCChHHHHHHHHHHhh----ccc-cccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHH
Confidence            3578999999999999999999853    331 122222     1 13332211100    0000    0000 011335


Q ss_pred             HHHhCCCeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694         173 NVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHH  205 (247)
Q Consensus       173 ~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~  205 (247)
                      +++.....|+++|||+.+...  .+++..++.+
T Consensus       213 aIrsm~PEViIvDEIGt~~d~--~A~~ta~~~G  243 (308)
T COG3854         213 AIRSMSPEVIIVDEIGTEEDA--LAILTALHAG  243 (308)
T ss_pred             HHHhcCCcEEEEeccccHHHH--HHHHHHHhcC
Confidence            566666789999999887653  3455555554

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.86  E-value=0.0027  Score=54.24  Aligned_cols=42  Identities=17%  Similarity=0.353  Sum_probs=31.1

Q ss_pred             HHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694          89 HICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus        89 ~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .|.+.+..+...   +.+|..+.+.||+|+|||++++.|+..+..
T Consensus        18 ~l~~~~~~~~~~---~~~~~iigi~G~~GsGKTTl~~~L~~~l~~   59 (229)
T PRK09270         18 PLLRRLAALQAE---PQRRTIVGIAGPPGAGKSTLAEFLEALLQQ   59 (229)
T ss_pred             HHHHHHHHHHhc---CCCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            344444444433   347888999999999999999999988654

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=96.86  E-value=0.01  Score=51.52  Aligned_cols=90  Identities=16%  Similarity=0.237  Sum_probs=55.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec-------------ccccCCCCChHHHHHHHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN-------------SRIHFPNENHVSLYRLQLTNWIISNVT  175 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~-------------~~l~~~~~~~v~~~~~~l~~~~~~~l~  175 (247)
                      .+.++|+.|+|||++.|++...+..   +.  ...+.++-             .++..++...+..-..+..+.+...+.
T Consensus        53 ~~~vtGevGsGKTv~~Ral~~s~~~---d~--~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~  127 (269)
T COG3267          53 ILAVTGEVGSGKTVLRRALLASLNE---DQ--VAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVK  127 (269)
T ss_pred             eEEEEecCCCchhHHHHHHHHhcCC---Cc--eEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH
Confidence            5678999999999999977666433   21  11122221             222222222223223334455556666


Q ss_pred             hCCC-eEEEEeCCCCCChhhHHHHHhhcc
Q psy1694         176 ACDR-AIFIFDEVDKFPKGLLDVIIPFID  203 (247)
Q Consensus       176 ~~~~-~vlilDEiek~~~~~~~~Ll~~Le  203 (247)
                      +..+ -++++||++.+..+....|+.+.+
T Consensus       128 ~g~r~v~l~vdEah~L~~~~le~Lrll~n  156 (269)
T COG3267         128 KGKRPVVLMVDEAHDLNDSALEALRLLTN  156 (269)
T ss_pred             hCCCCeEEeehhHhhhChhHHHHHHHHHh
Confidence            6666 788899999999988888877654

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=96.86  E-value=0.012  Score=49.65  Aligned_cols=24  Identities=17%  Similarity=-0.014  Sum_probs=20.6

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      -.+++.||+|.|||++.+.++...
T Consensus        30 ~~~~l~G~n~~GKstll~~i~~~~   53 (204)
T cd03282          30 RFHIITGPNMSGKSTYLKQIALLA   53 (204)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999997553

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.86  E-value=0.001  Score=46.02  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=20.1

Q ss_pred             EEEeecCCChHHHHHHHHHHHh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +.+.|++|+|||++++.+++.+
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5679999999999999999886

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK12608 transcription termination factor Rho; Provisional

Probab=96.85  E-value=0.0069  Score=55.59  Aligned_cols=25  Identities=16%  Similarity=0.185  Sum_probs=21.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      -.++.||+|||||++++.+++.+..
T Consensus       135 R~LIvG~pGtGKTTLl~~la~~i~~  159 (380)
T PRK12608        135 RGLIVAPPRAGKTVLLQQIAAAVAA  159 (380)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3588999999999999999998654

>KOG0479|consensus

Probab=96.83  E-value=0.005  Score=58.98  Aligned_cols=130  Identities=17%  Similarity=0.156  Sum_probs=78.7

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHHHHh----hhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhcccc-CCCCCccee
Q psy1694          71 VLEEQLKQHVHGQELAISHICGALKNH----FQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-DKGTSRFVH  145 (247)
Q Consensus        71 ~L~~~L~~~l~Gq~~a~~~l~~~l~~~----~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~-~g~~~~~v~  145 (247)
                      -|.+.|...++|.+.+++.+.=.+-..    +.+...-+--.++|+.|.|-|.|+-+.|.+-+..-.... .|..|.=|-
T Consensus       294 lLa~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVG  373 (818)
T KOG0479|consen  294 LLARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVG  373 (818)
T ss_pred             HHhhccCcccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCcc
Confidence            355666778999998887776555432    222221223357999999999999999999665211000 111222222


Q ss_pred             eecccccCCCCChHHHHHHHHHHHH-HHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc
Q psy1694         146 KFNSRIHFPNENHVSLYRLQLTNWI-ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN  209 (247)
Q Consensus       146 ~~~~~l~~~~~~~v~~~~~~l~~~~-~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~  209 (247)
                      ...+.-..++.+         +.++ .++.--+.+||+.|||+|||+..-..++-.+||.++++.
T Consensus       374 LTAAVTtD~eTG---------ERRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTI  429 (818)
T KOG0479|consen  374 LTAAVTTDQETG---------ERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTI  429 (818)
T ss_pred             ceeEEeeccccc---------hhhhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEe
Confidence            221111111111         1112 133445678999999999999988889999999887553

>KOG3347|consensus

Probab=96.83  E-value=0.00093  Score=53.49  Aligned_cols=22  Identities=32%  Similarity=0.591  Sum_probs=20.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++++|.||||||+++..||+.
T Consensus         9 NILvtGTPG~GKstl~~~lae~   30 (176)
T KOG3347|consen    9 NILVTGTPGTGKSTLAERLAEK   30 (176)
T ss_pred             CEEEeCCCCCCchhHHHHHHHH
Confidence            6899999999999999999976

>PRK14527 adenylate kinase; Provisional

Probab=96.82  E-value=0.0012  Score=54.76  Aligned_cols=27  Identities=26%  Similarity=0.457  Sum_probs=23.6

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+|..+++.||||+|||++|+.+++.+
T Consensus         4 ~~~~~i~i~G~pGsGKsT~a~~La~~~   30 (191)
T PRK14527          4 TKNKVVIFLGPPGAGKGTQAERLAQEL   30 (191)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            356689999999999999999998773

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.81  E-value=0.0055  Score=54.19  Aligned_cols=50  Identities=20%  Similarity=0.167  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHhhhcccC----CCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694          84 ELAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus        84 ~~a~~~l~~~l~~~~~~~~~----~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +.+.+.+.+.+...+.....    ..++.+++|.||+|+|||+++..||..+..
T Consensus       167 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~  220 (282)
T TIGR03499       167 EDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVL  220 (282)
T ss_pred             HHHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34455555656554431110    125668999999999999999999988643

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=96.80  E-value=0.014  Score=48.14  Aligned_cols=22  Identities=14%  Similarity=0.080  Sum_probs=19.2

Q ss_pred             EEEeecCCChHHHHHHHHHHHh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++++||.|.|||++.+.++-..
T Consensus         2 ~~ltG~N~~GKst~l~~i~~~~   23 (185)
T smart00534        2 VIITGPNMGGKSTYLRQVGLIV   23 (185)
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            6789999999999999998443

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=96.79  E-value=0.0035  Score=57.87  Aligned_cols=24  Identities=25%  Similarity=0.225  Sum_probs=21.2

Q ss_pred             EEEeecCCChHHHHHHHHHHHhhc
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .++.||+|+|||++++.|++.+..
T Consensus       172 ~lIvgppGvGKTTLaK~Ian~I~~  195 (416)
T PRK09376        172 GLIVAPPKAGKTVLLQNIANSITT  195 (416)
T ss_pred             EEEeCCCCCChhHHHHHHHHHHHh
Confidence            678899999999999999988644

>TIGR00235 udk uridine kinase

Probab=96.79  E-value=0.0014  Score=55.07  Aligned_cols=28  Identities=29%  Similarity=0.453  Sum_probs=24.3

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +.++.++.+.||+|+||||+++.|+..+
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l   30 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQL   30 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence            4466788999999999999999998874

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK14532 adenylate kinase; Provisional

Probab=96.78  E-value=0.0011  Score=54.58  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=20.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+++.||||+|||++|+.||+.
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~   23 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEE   23 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999999987

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=96.77  E-value=0.014  Score=53.65  Aligned_cols=92  Identities=11%  Similarity=-0.005  Sum_probs=48.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee-cccccCCCC--------ChHHHHHHHHHHHHHHHHHhCCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-NSRIHFPNE--------NHVSLYRLQLTNWIISNVTACDR  179 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~-~~~l~~~~~--------~~v~~~~~~l~~~~~~~l~~~~~  179 (247)
                      .+++.||+|+|||++.+++.+++..   .......+.+. -.++..+.+        ..++.-...+...++..++. ..
T Consensus       151 lilI~G~TGSGKTT~l~al~~~i~~---~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~-~P  226 (372)
T TIGR02525       151 LGLICGETGSGKSTLAASIYQHCGE---TYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRR-AP  226 (372)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh---cCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhcc-CC
Confidence            4788999999999999999888642   11111122211 112111110        00010000122334344443 56


Q ss_pred             eEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694         180 AIFIFDEVDKFPKGLLDVIIPFIDHHA  206 (247)
Q Consensus       180 ~vlilDEiek~~~~~~~~Ll~~Le~~~  206 (247)
                      ++++++|+-.  ++..+..++..+.|.
T Consensus       227 D~I~vGEiRd--~et~~~al~aa~TGH  251 (372)
T TIGR02525       227 KIIGVGEIRD--LETFQAAVLAGQSGH  251 (372)
T ss_pred             CEEeeCCCCC--HHHHHHHHHHHhcCC
Confidence            8999999963  445555566666653

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>PRK00625 shikimate kinase; Provisional

Probab=96.77  E-value=0.0012  Score=54.16  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=21.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .++|.|.||+|||++++.+|+.+
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l   24 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFL   24 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999985

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=96.75  E-value=0.0014  Score=53.51  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=21.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+++.|+||+|||++|+.+++.+
T Consensus         4 ~i~l~G~~gsGKst~a~~l~~~~   26 (175)
T cd00227           4 IIILNGGSSAGKSSIARALQSVL   26 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            68899999999999999998874

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK13947 shikimate kinase; Provisional

Probab=96.75  E-value=0.0013  Score=53.17  Aligned_cols=23  Identities=35%  Similarity=0.534  Sum_probs=21.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++++.|+||+|||++|+.+|+.+
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~l   25 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTL   25 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999985

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=96.74  E-value=0.0042  Score=54.64  Aligned_cols=74  Identities=18%  Similarity=0.220  Sum_probs=37.1

Q ss_pred             EEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc-----CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEE
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH-----FPNENHVSLYRLQLTNWIISNVTACDRAIFIF  184 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~-----~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlil  184 (247)
                      ++++|-||+|||++|+.|++.+-.   .+.  ..+.++-..+.     +......+..++.+...+...+..  ..+||+
T Consensus         4 iil~G~P~SGKTt~a~~L~~~~~~---~~~--~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~--~~iVI~   76 (270)
T PF08433_consen    4 IILCGLPCSGKTTRAKELKKYLEE---KGK--EVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSK--DTIVIL   76 (270)
T ss_dssp             EEEE--TTSSHHHHHHHHHHHHHH---TT----EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT---SEEEE
T ss_pred             EEEEcCCCCcHHHHHHHHHHHHHh---cCC--EEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhcc--CeEEEE
Confidence            677999999999999999998544   322  22233221221     112222233444555555444433  379999


Q ss_pred             eCCCCC
Q psy1694         185 DEVDKF  190 (247)
Q Consensus       185 DEiek~  190 (247)
                      |.....
T Consensus        77 Dd~nYi   82 (270)
T PF08433_consen   77 DDNNYI   82 (270)
T ss_dssp             -S---S
T ss_pred             eCCchH
Confidence            998654

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=96.73  E-value=0.014  Score=50.90  Aligned_cols=26  Identities=19%  Similarity=0.344  Sum_probs=21.6

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ..+++.||||+|||++|..++.+...
T Consensus        37 s~~lI~G~pGtGKT~l~~qf~~~~a~   62 (259)
T TIGR03878        37 SVINITGVSDTGKSLMVEQFAVTQAS   62 (259)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            36889999999999999988776443

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=96.72  E-value=0.0013  Score=52.02  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=20.3

Q ss_pred             EEEeecCCChHHHHHHHHHHHh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++++|+||+|||++|+.+++.+
T Consensus         2 i~l~G~~GsGKstla~~la~~l   23 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKAL   23 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            6889999999999999999884

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>TIGR02012 tigrfam_recA protein RecA

Probab=96.72  E-value=0.0083  Score=54.08  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=20.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+.+.||||+|||++|-.++.+...
T Consensus        57 iteI~G~~GsGKTtLaL~~~~~~~~   81 (321)
T TIGR02012        57 IIEIYGPESSGKTTLALHAIAEAQK   81 (321)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            6889999999999999877666443

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.71  E-value=0.018  Score=52.25  Aligned_cols=29  Identities=28%  Similarity=0.536  Sum_probs=25.5

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+|.++-+.|+||+|||++...+...+-.
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~   82 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIE   82 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            46778999999999999999999888654

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases

Probab=96.71  E-value=0.024  Score=45.08  Aligned_cols=22  Identities=14%  Similarity=0.194  Sum_probs=18.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+++.||+|+|||+++...+-.
T Consensus        16 ~~li~aptGsGKT~~~~~~~l~   37 (169)
T PF00270_consen   16 NVLISAPTGSGKTLAYILPALN   37 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCccHHHHHHHHHh
Confidence            5789999999999999865544

Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....

>PRK07667 uridine kinase; Provisional

Probab=96.70  E-value=0.0032  Score=52.42  Aligned_cols=28  Identities=14%  Similarity=0.326  Sum_probs=24.5

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .++.+.+.|++|+|||++|+.|++.+-.
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~~   43 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMKQ   43 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4468899999999999999999998754

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=96.70  E-value=0.0074  Score=64.07  Aligned_cols=104  Identities=13%  Similarity=0.239  Sum_probs=69.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHH-------HHHHHHHHHHhCCCeE
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQ-------LTNWIISNVTACDRAI  181 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~-------l~~~~~~~l~~~~~~v  181 (247)
                      .+++.||+.+|||.+...+|+...        ..||++|-.+. .....+++.|...       -++.+-+++++  +--
T Consensus       890 P~LiQGpTSSGKTSMI~yla~~tg--------hkfVRINNHEH-TdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~--GyW  958 (4600)
T COG5271         890 PLLIQGPTSSGKTSMILYLARETG--------HKFVRINNHEH-TDLQEYIGTYVTDDDGSLSFKEGVLVEALRR--GYW  958 (4600)
T ss_pred             cEEEecCCCCCcchHHHHHHHHhC--------ccEEEecCccc-chHHHHhhceeecCCCceeeehhHHHHHHhc--CcE
Confidence            469999999999999999998842        37899885432 1112233322110       01344455544  457


Q ss_pred             EEEeCCCCCChhhHHHHHhhcccCcc-----ccc--ccCCceEEEEEeC
Q psy1694         182 FIFDEVDKFPKGLLDVIIPFIDHHAV-----YNQ--ISFQNTIFLFLSN  223 (247)
Q Consensus       182 lilDEiek~~~~~~~~Ll~~Le~~~~-----~~~--~~~~~~ifI~tSN  223 (247)
                      +++||..-.|.+++.+|-++||..+-     ++-  +...+..+..|-|
T Consensus       959 IVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQN 1007 (4600)
T COG5271         959 IVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQN 1007 (4600)
T ss_pred             EEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecC
Confidence            88999999999999999999998652     111  2445555666667

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=96.70  E-value=0.02  Score=47.79  Aligned_cols=21  Identities=14%  Similarity=0.173  Sum_probs=19.3

Q ss_pred             EEEEeecCCChHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~  129 (247)
                      .++|+||.|+|||++.+.++.
T Consensus        30 ~~~ltG~Ng~GKStll~~i~~   50 (200)
T cd03280          30 VLVITGPNAGGKTVTLKTLGL   50 (200)
T ss_pred             EEEEECCCCCChHHHHHHHHH
Confidence            689999999999999999983

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK04040 adenylate kinase; Provisional

Probab=96.70  E-value=0.0017  Score=54.07  Aligned_cols=25  Identities=24%  Similarity=0.494  Sum_probs=22.6

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      |..+.++|+||+|||++++.+++.+
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l   26 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKL   26 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence            4578999999999999999999886

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=96.70  E-value=0.0011  Score=53.34  Aligned_cols=22  Identities=23%  Similarity=0.539  Sum_probs=19.6

Q ss_pred             EEEeecCCChHHHHHHHHHHHh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +++.||+|+|||++|+.+++.+
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l   22 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRL   22 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhc
Confidence            3678999999999999998874

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=96.69  E-value=0.0052  Score=57.80  Aligned_cols=27  Identities=19%  Similarity=0.469  Sum_probs=24.9

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+|..+++.|+||+|||++|..+|+.+
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~l  279 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRL  279 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            468899999999999999999999985

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.68  E-value=0.01  Score=48.86  Aligned_cols=86  Identities=13%  Similarity=0.041  Sum_probs=46.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee---cccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF---NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFD  185 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~---~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilD  185 (247)
                      .+.+.||+|+|||++.++|+..+...  .|    -+.++   ++... .....-+.-+..  -.+...+.. ...++++|
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G----~i~~~g~~i~~~~-q~~~LSgGq~qr--v~laral~~-~p~lllLD   96 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQLIPN--GD----NDEWDGITPVYKP-QYIDLSGGELQR--VAIAAALLR-NATFYLFD   96 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCCC--Cc----EEEECCEEEEEEc-ccCCCCHHHHHH--HHHHHHHhc-CCCEEEEE
Confidence            57889999999999999997764320  11    12221   11110 011111111111  112122222 44899999


Q ss_pred             CCC-CCChhhHHHHHhhccc
Q psy1694         186 EVD-KFPKGLLDVIIPFIDH  204 (247)
Q Consensus       186 Eie-k~~~~~~~~Ll~~Le~  204 (247)
                      |-- .+++.....+...+.+
T Consensus        97 EPts~LD~~~~~~l~~~l~~  116 (177)
T cd03222          97 EPSAYLDIEQRLNAARAIRR  116 (177)
T ss_pred             CCcccCCHHHHHHHHHHHHH
Confidence            994 6777777766666654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.67  E-value=0.0017  Score=54.65  Aligned_cols=27  Identities=26%  Similarity=0.383  Sum_probs=23.7

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      |.+|..++|.||+|+|||++++.|.+.
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            567778899999999999999999764

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=96.67  E-value=0.0014  Score=51.82  Aligned_cols=21  Identities=29%  Similarity=0.518  Sum_probs=19.5

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|+||+|||++|+.+++.
T Consensus         2 i~l~G~~GsGKST~a~~l~~~   22 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAER   22 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhh
Confidence            578999999999999999887

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=96.65  E-value=0.024  Score=45.15  Aligned_cols=25  Identities=32%  Similarity=0.614  Sum_probs=22.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++++.|+||+|||++|+.++..+..
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~   25 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQ   25 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            3688999999999999999998753

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.64  E-value=0.0096  Score=49.74  Aligned_cols=27  Identities=19%  Similarity=0.378  Sum_probs=22.8

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ...+.++||||+|||+++..++.+...
T Consensus        12 g~i~~i~G~~GsGKT~l~~~~~~~~~~   38 (209)
T TIGR02237        12 GTITQIYGPPGSGKTNICMILAVNAAR   38 (209)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            346899999999999999998877544

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK07261 topology modulation protein; Provisional

Probab=96.63  E-value=0.0016  Score=53.23  Aligned_cols=22  Identities=23%  Similarity=0.448  Sum_probs=20.0

Q ss_pred             EEEeecCCChHHHHHHHHHHHh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +++.|+||+|||++|+.|++.+
T Consensus         3 i~i~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          3 IAIIGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            6889999999999999998773

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.63  E-value=0.012  Score=52.46  Aligned_cols=92  Identities=15%  Similarity=0.209  Sum_probs=47.8

Q ss_pred             EEEeecCCChHHHHHHHHHHHhhccccCC---C--CCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEE
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIFKRYKDK---G--TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIF  184 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~~~~~~g---~--~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlil  184 (247)
                      +|.+||+|+|||++..++-.++......-   .  .-.||+.+-..+  -....++.....+.+.++.++++.| +|+++
T Consensus       128 ILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skksl--I~QREvG~dT~sF~~aLraALReDP-DVIlv  204 (353)
T COG2805         128 ILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSL--INQREVGRDTLSFANALRAALREDP-DVILV  204 (353)
T ss_pred             EEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhh--hhHHHhcccHHHHHHHHHHHhhcCC-CEEEE
Confidence            67799999999999888878765410000   0  111222221110  0011122223334455666666654 78887


Q ss_pred             eCCCCCChhhHHHHHhhcccCc
Q psy1694         185 DEVDKFPKGLLDVIIPFIDHHA  206 (247)
Q Consensus       185 DEiek~~~~~~~~Ll~~Le~~~  206 (247)
                      =|+-  +.+....-+..=|.|.
T Consensus       205 GEmR--D~ETi~~ALtAAETGH  224 (353)
T COG2805         205 GEMR--DLETIRLALTAAETGH  224 (353)
T ss_pred             eccc--cHHHHHHHHHHHhcCC
Confidence            7773  3344455555556654

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.63  E-value=0.0019  Score=55.45  Aligned_cols=26  Identities=31%  Similarity=0.530  Sum_probs=23.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .|+-+++.||||+|||++|+.||+.+
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~   30 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKE   30 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            56668999999999999999999983

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.62  E-value=0.012  Score=53.11  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=20.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+.++||||+|||++|-.++.+...
T Consensus        57 iteI~Gp~GsGKTtLal~~~~~~~~   81 (325)
T cd00983          57 IIEIYGPESSGKTTLALHAIAEAQK   81 (325)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            6789999999999999887666433

RecA couples ATP hydrolysis to DNA strand exchange.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.62  E-value=0.015  Score=45.96  Aligned_cols=86  Identities=13%  Similarity=0.169  Sum_probs=47.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec-ccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN-SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEV  187 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~-~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEi  187 (247)
                      .+.+.||+|+|||++.++++..+...  .|   . +.++- ..+.+... .-+.-+.  +-.+...+.. +..++++||-
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~~~~--~G---~-i~~~~~~~i~~~~~-lS~G~~~--rv~laral~~-~p~illlDEP   97 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGELEPD--EG---I-VTWGSTVKIGYFEQ-LSGGEKM--RLALAKLLLE-NPNLLLLDEP   97 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCCCC--ce---E-EEECCeEEEEEEcc-CCHHHHH--HHHHHHHHhc-CCCEEEEeCC
Confidence            57899999999999999997763220  11   1 11110 00000000 1010111  1112222222 4489999999


Q ss_pred             C-CCChhhHHHHHhhccc
Q psy1694         188 D-KFPKGLLDVIIPFIDH  204 (247)
Q Consensus       188 e-k~~~~~~~~Ll~~Le~  204 (247)
                      . .+++.....+...+.+
T Consensus        98 ~~~LD~~~~~~l~~~l~~  115 (144)
T cd03221          98 TNHLDLESIEALEEALKE  115 (144)
T ss_pred             ccCCCHHHHHHHHHHHHH
Confidence            4 6788888888877765

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.61  E-value=0.0018  Score=52.83  Aligned_cols=23  Identities=35%  Similarity=0.462  Sum_probs=20.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.|+||+|||++|+.+++.+
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57789999999999999999873

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3

Probab=96.61  E-value=0.0054  Score=49.27  Aligned_cols=44  Identities=23%  Similarity=0.383  Sum_probs=30.9

Q ss_pred             hHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694          83 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus        83 q~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      |..+++.+.+.+... .      .+..+++.+|+|+|||.++-.++..++.
T Consensus         8 Q~~ai~~i~~~~~~~-~------~~~~~ll~~~tGsGKT~~~~~~~~~l~~   51 (184)
T PF04851_consen    8 QQEAIARIINSLENK-K------EERRVLLNAPTGSGKTIIALALILELAR   51 (184)
T ss_dssp             HHHHHHHHHHHHHTT-S------GCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhc-C------CCCCEEEEECCCCCcChhhhhhhhcccc
Confidence            666777666666543 0      2226799999999999999976666543

1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=96.60  E-value=0.0097  Score=53.33  Aligned_cols=26  Identities=19%  Similarity=0.259  Sum_probs=23.2

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +|.++++.||+|+|||++|..||+.+
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~   28 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRL   28 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhC
Confidence            45578999999999999999999984

>PLN02674 adenylate kinase

Probab=96.59  E-value=0.0035  Score=54.31  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=21.0

Q ss_pred             eEEEEeecCCChHHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ..+++.||||+||++.|+.||+.
T Consensus        32 ~~i~l~G~PGsGKgT~a~~La~~   54 (244)
T PLN02674         32 KRLILIGPPGSGKGTQSPIIKDE   54 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35788999999999999999997

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=96.59  E-value=0.0018  Score=50.60  Aligned_cols=22  Identities=27%  Similarity=0.640  Sum_probs=20.2

Q ss_pred             EEEeecCCChHHHHHHHHHHHh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +.+.|+||+|||++|+.|++.+
T Consensus         2 I~i~G~~GsGKst~a~~la~~~   23 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKL   23 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999884

>PRK00889 adenylylsulfate kinase; Provisional

Probab=96.58  E-value=0.0028  Score=51.61  Aligned_cols=28  Identities=18%  Similarity=0.463  Sum_probs=24.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++.++.+.|+||+|||++|+.++..+..
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~   30 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLRE   30 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3447889999999999999999998754

>PF00488 MutS_V: MutS domain V C-terminus

Probab=96.58  E-value=0.049  Score=46.91  Aligned_cols=108  Identities=12%  Similarity=0.113  Sum_probs=56.5

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee-------cccccCCC--CChHHHHHHHHHHHHHHHHHh-C
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-------NSRIHFPN--ENHVSLYRLQLTNWIISNVTA-C  177 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~-------~~~l~~~~--~~~v~~~~~~l~~~~~~~l~~-~  177 (247)
                      ..++++||...|||+..|.++-..+-.+ -|...|.-...       ...+...+  ......|..++.. +...+.. .
T Consensus        44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq-~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~-~~~il~~~~  121 (235)
T PF00488_consen   44 RIIIITGPNMSGKSTFLKQIGLIVILAQ-IGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKR-LSSILRNAT  121 (235)
T ss_dssp             SEEEEESSTTSSHHHHHHHHHHHHHHHT-TT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHH-HHHHHHH--
T ss_pred             eEEEEeCCCccchhhHHHHHHHHhhhhh-cCceeeecccccccccEEEeecccccccccccccHHHhHHH-HHhhhhhcc
Confidence            4789999999999999999988764321 23211110100       11111111  1112335444432 3234444 3


Q ss_pred             CCeEEEEeCCCCCCh-----hhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         178 DRAIFIFDEVDKFPK-----GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       178 ~~~vlilDEiek~~~-----~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                      ..+++++||+.+-..     .+...+++.|.+.        .++.+|++|...
T Consensus       122 ~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~--------~~~~~i~~TH~~  166 (235)
T PF00488_consen  122 EKSLVLIDELGRGTNPEEGIAIAIAILEYLLEK--------SGCFVIIATHFH  166 (235)
T ss_dssp             TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHT--------TT-EEEEEES-G
T ss_pred             cceeeecccccCCCChhHHHHHHHHHHHHHHHh--------ccccEEEEeccc
Confidence            569999999988753     3444555555542        245677777654

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>PRK12338 hypothetical protein; Provisional

Probab=96.57  E-value=0.0021  Score=57.81  Aligned_cols=26  Identities=19%  Similarity=0.368  Sum_probs=24.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +|..+++.|+||+|||++|+.+|+.+
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l   28 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTL   28 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHC
Confidence            67789999999999999999999985

>TIGR00643 recG ATP-dependent DNA helicase RecG

Probab=96.56  E-value=0.048  Score=53.61  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=18.0

Q ss_pred             CCeEEEEeecCCChHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDF  126 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~  126 (247)
                      .|...++.||+|+|||.++-.
T Consensus       255 ~~~~~Ll~g~TGSGKT~va~l  275 (630)
T TIGR00643       255 VPMNRLLQGDVGSGKTLVAAL  275 (630)
T ss_pred             CCccEEEECCCCCcHHHHHHH
Confidence            566789999999999998854

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=96.55  E-value=0.018  Score=50.71  Aligned_cols=24  Identities=13%  Similarity=0.097  Sum_probs=21.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ++++.||+|+|||++.+.++..+.
T Consensus       113 ~~~i~g~~g~GKttl~~~l~~~~~  136 (270)
T TIGR02858       113 NTLIISPPQCGKTTLLRDLARILS  136 (270)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCccC
Confidence            689999999999999999988753

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK13826 Dtr system oriT relaxase; Provisional

Probab=96.54  E-value=0.0087  Score=61.84  Aligned_cols=85  Identities=13%  Similarity=0.183  Sum_probs=48.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHH-------HHHHHHH----HHHhC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQ-------LTNWIIS----NVTAC  177 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~-------l~~~~~~----~l~~~  177 (247)
                      ..++.|++|||||++.+.+.+..-.   .|.  . |....     |.........+.       +..++..    .-.-.
T Consensus       399 ~~~v~G~AGTGKTt~l~~~~~~~e~---~G~--~-V~g~A-----pTgkAA~~L~e~~Gi~a~TIas~ll~~~~~~~~l~  467 (1102)
T PRK13826        399 IAAVVGRAGAGKTTMMKAAREAWEA---AGY--R-VVGGA-----LAGKAAEGLEKEAGIQSRTLSSWELRWNQGRDQLD  467 (1102)
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHH---cCC--e-EEEEc-----CcHHHHHHHHHhhCCCeeeHHHHHhhhccCccCCC
Confidence            5788999999999999999877433   321  1 11111     000000000000       0111100    00011


Q ss_pred             CCeEEEEeCCCCCChhhHHHHHhhccc
Q psy1694         178 DRAIFIFDEVDKFPKGLLDVIIPFIDH  204 (247)
Q Consensus       178 ~~~vlilDEiek~~~~~~~~Ll~~Le~  204 (247)
                      +..+||+||+..++...+..|++..+.
T Consensus       468 ~~~vlVIDEAsMv~~~~m~~Ll~~~~~  494 (1102)
T PRK13826        468 NKTVFVLDEAGMVASRQMALFVEAVTR  494 (1102)
T ss_pred             CCcEEEEECcccCCHHHHHHHHHHHHh
Confidence            347999999999999999999888864

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=96.54  E-value=0.0095  Score=53.75  Aligned_cols=110  Identities=18%  Similarity=0.234  Sum_probs=55.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee-ecccccCCCCChHHHH---HHHHHHHHHHHHHhCCCeEEEE
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK-FNSRIHFPNENHVSLY---RLQLTNWIISNVTACDRAIFIF  184 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~-~~~~l~~~~~~~v~~~---~~~l~~~~~~~l~~~~~~vlil  184 (247)
                      ++++.|++|+|||++++++...+..   .......+.+ +..++..+.+..+...   ...+...+...+ +.....+++
T Consensus       146 nilI~G~tGSGKTTll~aL~~~i~~---~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aL-R~~PD~Iiv  221 (323)
T PRK13833        146 NIVISGGTGSGKTTLANAVIAEIVA---SAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTM-RLRPDRIIV  221 (323)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhc---CCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHh-CCCCCEEEE
Confidence            6899999999999999999887632   0001111211 1233333222211100   001223343344 344578889


Q ss_pred             eCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694         185 DEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT  232 (247)
Q Consensus       185 DEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~  232 (247)
                      .|+-.-  +... +++.+..+.       .-++.=+-+|...+.+.+.
T Consensus       222 GEiRg~--ea~~-~l~a~~tGh-------~G~itTiHA~s~~~a~~Rl  259 (323)
T PRK13833        222 GEVRDG--AALT-LLKAWNTGH-------PGGVTTIHSNTAMSALRRL  259 (323)
T ss_pred             eecCCH--HHHH-HHHHHcCCC-------CceEEEECCCCHHHHHHHH
Confidence            999542  3433 566666543       1123333345555555544

>KOG0481|consensus

Probab=96.53  E-value=0.0027  Score=59.96  Aligned_cols=121  Identities=18%  Similarity=0.199  Sum_probs=66.1

Q ss_pred             HHhhcCChHHHHHHHHHHHHH----hhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhcc---ccCCCCCcceeeec
Q psy1694          76 LKQHVHGQELAISHICGALKN----HFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKR---YKDKGTSRFVHKFN  148 (247)
Q Consensus        76 L~~~l~Gq~~a~~~l~~~l~~----~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~---~~~g~~~~~v~~~~  148 (247)
                      +...++|..+.+..+.=.+-.    .+......+--.++||.|.|||.|+-+.+.+-+.  +.   |-.|..|.---...
T Consensus       329 IAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkv--sPIaVYTSGKGSSAAGLTA  406 (729)
T KOG0481|consen  329 IAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKV--SPIAVYTSGKGSSAAGLTA  406 (729)
T ss_pred             cCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhc--CceEEEecCCCccccccee
Confidence            333689988877766544432    1111111122347999999999999999998433  20   00111111001111


Q ss_pred             ccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694         149 SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA  206 (247)
Q Consensus       149 ~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~  206 (247)
                      +..-.|....+- .++       ++.--++++|+.+||+|||.++-.-++-..||..+
T Consensus       407 SV~RD~~tReFy-lEG-------GAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQT  456 (729)
T KOG0481|consen  407 SVIRDPSTREFY-LEG-------GAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQT  456 (729)
T ss_pred             eEEecCCcceEE-Eec-------ceEEEecCCEEEeehhhccCchhhhHHHHHHHhhh
Confidence            111111110000 011       33345678999999999999987777777777654

>PRK14531 adenylate kinase; Provisional

Probab=96.53  E-value=0.0024  Score=52.63  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=20.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .++++||||+|||++++.||+.+
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~   26 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAH   26 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999999984

>PRK14530 adenylate kinase; Provisional

Probab=96.52  E-value=0.0021  Score=54.30  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+++.||||+|||++|+.||+.+
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~   27 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEF   27 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999999884

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.52  E-value=0.0059  Score=47.40  Aligned_cols=23  Identities=26%  Similarity=0.333  Sum_probs=22.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +++|.|+-|+|||+++|.+++.+
T Consensus        17 vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   17 VILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            79999999999999999999996

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.52  E-value=0.0022  Score=52.29  Aligned_cols=24  Identities=25%  Similarity=0.440  Sum_probs=21.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+++.||+|+|||++++.|+..+.
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            578899999999999999988853

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=96.51  E-value=0.0053  Score=54.98  Aligned_cols=28  Identities=25%  Similarity=0.487  Sum_probs=24.1

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +.++..+.++|++|+|||++++.+|+.+
T Consensus       130 ~~~~~~I~l~G~~GsGKStvg~~La~~L  157 (309)
T PRK08154        130 AARRRRIALIGLRGAGKSTLGRMLAARL  157 (309)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence            3455578999999999999999999885

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=96.51  E-value=0.02  Score=48.48  Aligned_cols=26  Identities=27%  Similarity=0.204  Sum_probs=21.0

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ..+++.|+||+|||++|..++.....
T Consensus        17 ~~~li~G~~G~GKt~~~~~~~~~~~~   42 (224)
T TIGR03880        17 HVIVVIGEYGTGKTTFSLQFLYQGLK   42 (224)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            36888999999999999888766443

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=96.51  E-value=0.033  Score=50.52  Aligned_cols=108  Identities=17%  Similarity=0.146  Sum_probs=56.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee-ecccccCC-CCChH---------HHHHHHHHHHHHHHHHhC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK-FNSRIHFP-NENHV---------SLYRLQLTNWIISNVTAC  177 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~-~~~~l~~~-~~~~v---------~~~~~~l~~~~~~~l~~~  177 (247)
                      ++++.|++|+|||++.+++...+..   .   ...+.+ +..++..+ ++..+         +.-.-.+.+.+...+ +.
T Consensus       162 nili~G~tgSGKTTll~aL~~~ip~---~---~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~L-R~  234 (332)
T PRK13900        162 NIIISGGTSTGKTTFTNAALREIPA---I---ERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACL-RL  234 (332)
T ss_pred             cEEEECCCCCCHHHHHHHHHhhCCC---C---CeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHh-cc
Confidence            7899999999999999999887533   1   111111 11222211 01000         000001123343333 33


Q ss_pred             CCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHH
Q psy1694         178 DRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF  233 (247)
Q Consensus       178 ~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~  233 (247)
                      ..+.+++.|+-.  .+.. .+++.+..+.       .-++.=+-+|...+.+.+..
T Consensus       235 ~PD~IivGEiR~--~ea~-~~l~a~~tGh-------~G~~tTiHa~s~~~ai~Rl~  280 (332)
T PRK13900        235 RPDRIIVGELRG--AEAF-SFLRAINTGH-------PGSISTLHADSPAMAIEQLK  280 (332)
T ss_pred             CCCeEEEEecCC--HHHH-HHHHHHHcCC-------CcEEEEEecCCHHHHHHHHH
Confidence            457889999975  3444 3566776653       12334444566666665543

>KOG0482|consensus

Probab=96.51  E-value=0.0035  Score=59.13  Aligned_cols=131  Identities=17%  Similarity=0.171  Sum_probs=77.9

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhccc-C---CCCCeEEEEeecCCChHHHHHHHHHHHhhc-cccCCCCCcc
Q psy1694          69 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRY-H---NTKALAISLHGLPGTGKNYVTDFIVSSIFK-RYKDKGTSRF  143 (247)
Q Consensus        69 ~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~-~---~~kpl~lll~G~~GtGKt~~A~~la~~l~~-~~~~g~~~~~  143 (247)
                      .+.|.+.+...++|..+++..|.-.+-....... +   -+--.++++.|.||+.|+-+.+.+.+..-. .+-.|..|.=
T Consensus       333 yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSG  412 (721)
T KOG0482|consen  333 YEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSG  412 (721)
T ss_pred             HHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCc
Confidence            3446666666899999888777655543221111 0   012247999999999999999999765211 0001112222


Q ss_pred             eeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcc
Q psy1694         144 VHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV  207 (247)
Q Consensus       144 v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~  207 (247)
                      |-...+....|..+... .+       -+++--+++++-.|||+|||.+.-..++-.+||..++
T Consensus       413 VGLTAAVmkDpvTgEM~-LE-------GGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTI  468 (721)
T KOG0482|consen  413 VGLTAAVMKDPVTGEMV-LE-------GGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTI  468 (721)
T ss_pred             cccchhhhcCCCCCeeE-ec-------cceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhh
Confidence            22222222112111100 01       1345566789999999999999999999999998654

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.50  E-value=0.0021  Score=52.81  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=19.8

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|+||+|||++|+.|++.
T Consensus         2 I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999999987

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=96.48  E-value=0.0023  Score=56.56  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=21.5

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ..+++.|+||+|||++|+.|++.+
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~   26 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKN   26 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHC
Confidence            467889999999999999998884

>PRK13948 shikimate kinase; Provisional

Probab=96.48  E-value=0.0031  Score=52.21  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=23.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .|..++|.|.+|+|||++++.+|+.+
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~l   34 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRAL   34 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence            34578999999999999999999985

>PRK10646 ADP-binding protein; Provisional

Probab=96.47  E-value=0.0066  Score=48.91  Aligned_cols=43  Identities=19%  Similarity=0.156  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694          84 ELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus        84 ~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ......+.+.+.+.+....      +++|.|+=|+|||+++|.+++.+-
T Consensus        11 ~~~t~~l~~~la~~l~~g~------vi~L~GdLGaGKTtf~rgl~~~Lg   53 (153)
T PRK10646         11 EQATLDLGARVAKACDGAT------VIYLYGDLGAGKTTFSRGFLQALG   53 (153)
T ss_pred             HHHHHHHHHHHHHhCCCCc------EEEEECCCCCCHHHHHHHHHHHcC
Confidence            3445556666665554444      789999999999999999999964

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=96.46  E-value=0.0076  Score=55.44  Aligned_cols=25  Identities=28%  Similarity=0.403  Sum_probs=22.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+++.|+||+|||+++..++..+..
T Consensus        84 lvLI~G~pG~GKStLllq~a~~~a~  108 (372)
T cd01121          84 VILIGGDPGIGKSTLLLQVAARLAK  108 (372)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            6889999999999999999887544

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=96.45  E-value=0.04  Score=47.06  Aligned_cols=22  Identities=14%  Similarity=0.027  Sum_probs=19.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+++.||.|.|||++.+.++-.
T Consensus        33 ~~~itG~N~~GKStll~~i~~~   54 (222)
T cd03287          33 CQIITGPNMGGKSSYIRQVALI   54 (222)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999874

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK02496 adk adenylate kinase; Provisional

Probab=96.43  E-value=0.0026  Score=52.21  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=20.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      -+++.||||+|||++|+.|++.+
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~   25 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHL   25 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36889999999999999999874

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.43  E-value=0.0026  Score=52.54  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=20.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+++.||||+||+|.|+.|++.
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3688999999999999999998

>TIGR01587 cas3_core CRISPR-associated helicase Cas3

Probab=96.42  E-value=0.027  Score=50.95  Aligned_cols=23  Identities=13%  Similarity=0.140  Sum_probs=18.4

Q ss_pred             EEEeecCCChHHHHHHHHHHHhh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +++.+|||+|||+++-..+-...
T Consensus         2 vvi~apTGsGKT~~~~~~~l~~~   24 (358)
T TIGR01587         2 LVIEAPTGYGKTEAALLWALHSI   24 (358)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            57899999999999877755433

This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=96.42  E-value=0.0027  Score=50.41  Aligned_cols=20  Identities=25%  Similarity=0.463  Sum_probs=18.2

Q ss_pred             EeecCCChHHHHHHHHHHHh
Q psy1694         112 LHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       112 l~G~~GtGKt~~A~~la~~l  131 (247)
                      +.||||+||+++|+.||+.+
T Consensus         1 i~G~PgsGK~t~~~~la~~~   20 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRY   20 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhc
Confidence            57999999999999999983

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.42  E-value=0.29  Score=45.65  Aligned_cols=113  Identities=15%  Similarity=0.200  Sum_probs=66.7

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec----------------ccccCCC---CChHHHHHHH
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN----------------SRIHFPN---ENHVSLYRLQ  165 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~----------------~~l~~~~---~~~v~~~~~~  165 (247)
                      +.|.++++.|=-|+||||++-.||+++-.   .+...-.|..+.                ..-+|+.   ...+.-    
T Consensus        98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk---~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~I----  170 (451)
T COG0541          98 KPPTVILMVGLQGSGKTTTAGKLAKYLKK---KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEI----  170 (451)
T ss_pred             CCCeEEEEEeccCCChHhHHHHHHHHHHH---cCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHH----
Confidence            46889999999999999999999999755   443222333221                0001221   122221    


Q ss_pred             HHHHHHHHHHhCCCeEEEEeCCCCCC--hhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHH
Q psy1694         166 LTNWIISNVTACDRAIFIFDEVDKFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN  231 (247)
Q Consensus       166 l~~~~~~~l~~~~~~vlilDEiek~~--~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~  231 (247)
                      ..+.+ +..+...+.++|+|=++++.  ..+.+-+..+=+.      ++-..++++.=+-.|-+..|.
T Consensus       171 ak~al-~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~------~~P~E~llVvDam~GQdA~~~  231 (451)
T COG0541         171 AKAAL-EKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEV------INPDETLLVVDAMIGQDAVNT  231 (451)
T ss_pred             HHHHH-HHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhh------cCCCeEEEEEecccchHHHHH
Confidence            12233 34555667999999998875  4555554433222      111456777777777666553

>PRK13949 shikimate kinase; Provisional

Probab=96.42  E-value=0.0026  Score=51.95  Aligned_cols=23  Identities=26%  Similarity=0.392  Sum_probs=21.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+++.|++|+|||++++.+|+.+
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l   25 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAREL   25 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            37889999999999999999985

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=96.42  E-value=0.003  Score=53.00  Aligned_cols=26  Identities=23%  Similarity=0.510  Sum_probs=23.0

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +|..+++.|.||+|||++|+.+++.+
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~   27 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHR   27 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc
Confidence            45678999999999999999998874

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.41  E-value=0.0055  Score=51.97  Aligned_cols=25  Identities=24%  Similarity=0.418  Sum_probs=20.3

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++..+++.||||+|||.++..++..
T Consensus        18 ~gs~~li~G~~GsGKT~l~~q~l~~   42 (226)
T PF06745_consen   18 KGSVVLISGPPGSGKTTLALQFLYN   42 (226)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Confidence            3347899999999999999876554

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=96.41  E-value=0.0033  Score=52.24  Aligned_cols=25  Identities=24%  Similarity=0.411  Sum_probs=22.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++.+.||+|+|||++|+.|+..+-.
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~   25 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNK   25 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCc
Confidence            3678999999999999999999754

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=96.41  E-value=0.027  Score=45.64  Aligned_cols=23  Identities=17%  Similarity=0.447  Sum_probs=20.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+|||++.++|+..+
T Consensus        30 ~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          30 KVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            57889999999999999998774

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK06217 hypothetical protein; Validated

Probab=96.40  E-value=0.0026  Score=52.36  Aligned_cols=23  Identities=17%  Similarity=0.417  Sum_probs=20.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      -+++.|+||+|||++|+.|++.+
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l   25 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERL   25 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            37899999999999999999884

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=96.40  E-value=0.011  Score=57.21  Aligned_cols=62  Identities=11%  Similarity=0.244  Sum_probs=42.2

Q ss_pred             ccccHHHHHHHHHhh-----cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694          65 QSSNVRVLEEQLKQH-----VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus        65 ~~~~~~~L~~~L~~~-----l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +...-+.+++.|+..     .+-.+++.+.|.+....     . .++|..+.++|.+|+|||++|+.|++.+.
T Consensus       351 ~~~sgt~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~-----r-~~~g~~Ivl~Gl~GSGKSTia~~La~~L~  417 (568)
T PRK05537        351 LTISGTELRRRLREGLEIPEWFSFPEVVAELRRTYPP-----R-HKQGFTVFFTGLSGAGKSTIAKALMVKLM  417 (568)
T ss_pred             eccCHHHHHHHHHCCCCCChhhcHHHHHHHHHHHhcc-----c-cCCCeEEEEECCCCChHHHHHHHHHHHhh
Confidence            344456677777763     34455555544443321     1 34666899999999999999999999875

>KOG2543|consensus

Probab=96.39  E-value=0.042  Score=50.41  Aligned_cols=58  Identities=22%  Similarity=0.224  Sum_probs=38.8

Q ss_pred             hhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec
Q psy1694          78 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN  148 (247)
Q Consensus        78 ~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~  148 (247)
                      ..+.+.+..++.+...+    .+.. ..-|..+.+.|.+|||||++.+.+-+++.        -+.|.++|
T Consensus         6 ~~v~~Re~qi~~L~~Ll----g~~~-~~~PS~~~iyG~sgTGKT~~~r~~l~~~n--------~~~vw~n~   63 (438)
T KOG2543|consen    6 PNVPCRESQIRRLKSLL----GNNS-CTIPSIVHIYGHSGTGKTYLVRQLLRKLN--------LENVWLNC   63 (438)
T ss_pred             cCccchHHHHHHHHHHh----CCCC-cccceeEEEeccCCCchhHHHHHHHhhcC--------Ccceeeeh
Confidence            34566666665554333    2332 34677889999999999999999977742        25566665

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.39  E-value=0.059  Score=47.20  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=20.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+++.||+|+|||++.+++.+.+.
T Consensus        82 lilisG~tGSGKTT~l~all~~i~  105 (264)
T cd01129          82 IILVTGPTGSGKTTTLYSALSELN  105 (264)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhhC
Confidence            578999999999999998877653

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=96.37  E-value=0.01  Score=52.00  Aligned_cols=53  Identities=11%  Similarity=0.163  Sum_probs=39.2

Q ss_pred             cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694          80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +--+..+.+.+...+..++.... .+.|.++-+.|++|+||+++|+.+...+-.
T Consensus        56 ~~~~~~~~~~~~~~~~~~l~~~~-~~~pfIIgiaGsvavGKST~ar~L~~ll~~  108 (283)
T COG1072          56 LQLYVEARERLFAELLRFLGTNN-QQRPFIIGIAGSVAVGKSTTARILQALLSR  108 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCC-CCCCEEEEeccCccccHHHHHHHHHHHHhh
Confidence            33355566666666666655444 678999999999999999999999888643

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=96.36  E-value=0.045  Score=46.91  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=19.1

Q ss_pred             eEEEEeecCCChHHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ..+++.||||+|||++|..++..
T Consensus        22 s~~lI~G~pGsGKT~la~~~l~~   44 (237)
T TIGR03877        22 NVVLLSGGPGTGKSIFSQQFLWN   44 (237)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            37899999999999999766544

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK13764 ATPase; Provisional

Probab=96.35  E-value=0.0073  Score=58.74  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=22.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +++++||||+||||+++++++.+..
T Consensus       259 ~ILIsG~TGSGKTTll~AL~~~i~~  283 (602)
T PRK13764        259 GILIAGAPGAGKSTFAQALAEFYAD  283 (602)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            6899999999999999999988654

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]

Probab=96.35  E-value=0.016  Score=54.57  Aligned_cols=31  Identities=23%  Similarity=0.411  Sum_probs=23.9

Q ss_pred             HhCCCeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694         175 TACDRAIFIFDEVDKFPKGLLDVIIPFIDHH  205 (247)
Q Consensus       175 ~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~  205 (247)
                      .....++||+||++.+|......+...+...
T Consensus       143 ~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~  173 (442)
T COG1061         143 LGNEFGLIIFDEVHHLPAPSYRRILELLSAA  173 (442)
T ss_pred             cccccCEEEEEccccCCcHHHHHHHHhhhcc
Confidence            3346799999999999987777676666654

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.35  E-value=0.017  Score=46.10  Aligned_cols=87  Identities=11%  Similarity=0.114  Sum_probs=46.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC------CC-CC----hHHHHHHHHHHHHHHHHHhC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF------PN-EN----HVSLYRLQLTNWIISNVTAC  177 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~------~~-~~----~v~~~~~~l~~~~~~~l~~~  177 (247)
                      .+.+.||+|+|||++.++|+..+...  .|   . +.++-.....      .. -.    .-+..+.  .-.+...+.. 
T Consensus        27 ~~~i~G~nGsGKStll~~l~g~~~~~--~G---~-i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~--r~~l~~~l~~-   97 (157)
T cd00267          27 IVALVGPNGSGKSTLLRAIAGLLKPT--SG---E-ILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQ--RVALARALLL-   97 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCC--cc---E-EEECCEEcccCCHHHHHhceEEEeeCCHHHHH--HHHHHHHHhc-
Confidence            57899999999999999997654220  11   1 1111100000      00 00    1011111  1112222222 


Q ss_pred             CCeEEEEeCCC-CCChhhHHHHHhhccc
Q psy1694         178 DRAIFIFDEVD-KFPKGLLDVIIPFIDH  204 (247)
Q Consensus       178 ~~~vlilDEie-k~~~~~~~~Ll~~Le~  204 (247)
                      +..++++||.. .++......+.+.+.+
T Consensus        98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~  125 (157)
T cd00267          98 NPDLLLLDEPTSGLDPASRERLLELLRE  125 (157)
T ss_pred             CCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            35899999995 6777777777777765

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=96.33  E-value=0.033  Score=49.82  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=20.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+++.||+|+|||++++++...+
T Consensus       146 ~ili~G~tGsGKTTll~al~~~~  168 (308)
T TIGR02788       146 NIIISGGTGSGKTTFLKSLVDEI  168 (308)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            78999999999999999997764

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK11823 DNA repair protein RadA; Provisional

Probab=96.32  E-value=0.0072  Score=56.91  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=21.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+++.|+||+|||+++..++....
T Consensus        82 ~~lI~G~pG~GKTtL~lq~a~~~a  105 (446)
T PRK11823         82 VVLIGGDPGIGKSTLLLQVAARLA  105 (446)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999988754

>PRK13946 shikimate kinase; Provisional

Probab=96.31  E-value=0.0036  Score=51.63  Aligned_cols=26  Identities=27%  Similarity=0.383  Sum_probs=22.9

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+..+++.|.+|+|||++++.||+.+
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~L   34 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATML   34 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            34468999999999999999999985

>PLN02840 tRNA dimethylallyltransferase

Probab=96.31  E-value=0.018  Score=53.61  Aligned_cols=27  Identities=22%  Similarity=0.302  Sum_probs=23.5

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ++.++.+.||+|+|||++|..||+.+.
T Consensus        20 ~~~vi~I~GptgsGKTtla~~La~~~~   46 (421)
T PLN02840         20 KEKVIVISGPTGAGKSRLALELAKRLN   46 (421)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHCC
Confidence            445788999999999999999999953

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=96.30  E-value=0.011  Score=47.21  Aligned_cols=43  Identities=21%  Similarity=0.169  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694          84 ELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus        84 ~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ..+...+-+.+...+....      +++|.|+=|.|||+++|.+++.+-
T Consensus         8 ~~~t~~lg~~l~~~l~~g~------Vv~L~GdLGAGKTtf~rgi~~~Lg   50 (149)
T COG0802           8 EEATLALGERLAEALKAGD------VVLLSGDLGAGKTTLVRGIAKGLG   50 (149)
T ss_pred             HHHHHHHHHHHHhhCCCCC------EEEEEcCCcCChHHHHHHHHHHcC
Confidence            3445555555555544333      899999999999999999999975

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=96.28  E-value=0.0039  Score=50.95  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=21.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .++|.|++|+|||++++.+++.+
T Consensus         6 ~I~liG~~GaGKStl~~~La~~l   28 (172)
T PRK05057          6 NIFLVGPMGAGKSTIGRQLAQQL   28 (172)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHc
Confidence            58899999999999999999874

>PRK14528 adenylate kinase; Provisional

Probab=96.28  E-value=0.0035  Score=51.85  Aligned_cols=23  Identities=26%  Similarity=0.525  Sum_probs=20.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+++.||||+|||++|+.+++.+
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~   25 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERL   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46889999999999999998873

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.27  E-value=0.037  Score=44.62  Aligned_cols=89  Identities=13%  Similarity=0.130  Sum_probs=46.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC-CC----C---ChHHHH-HHHHHH-HHHHHHHhCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF-PN----E---NHVSLY-RLQLTN-WIISNVTACD  178 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~-~~----~---~~v~~~-~~~l~~-~~~~~l~~~~  178 (247)
                      .+.+.||+|+|||++.+.|+..+...  .|    -+.++-..+.. +.    .   .++..+ .++.+. .+...+. .+
T Consensus        28 ~~~l~G~nGsGKSTLl~~i~G~~~~~--~G----~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~-~~  100 (163)
T cd03216          28 VHALLGENGAGKSTLMKILSGLYKPD--SG----EILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALA-RN  100 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCC--Ce----EEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHh-cC
Confidence            57899999999999999997663220  11    12222111100 00    0   000000 011111 1212222 24


Q ss_pred             CeEEEEeCCC-CCChhhHHHHHhhccc
Q psy1694         179 RAIFIFDEVD-KFPKGLLDVIIPFIDH  204 (247)
Q Consensus       179 ~~vlilDEie-k~~~~~~~~Ll~~Le~  204 (247)
                      ..++++||-- .+++.....+...|.+
T Consensus       101 p~illlDEP~~~LD~~~~~~l~~~l~~  127 (163)
T cd03216         101 ARLLILDEPTAALTPAEVERLFKVIRR  127 (163)
T ss_pred             CCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence            4899999994 5788777777777765

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13975 thymidylate kinase; Provisional

Probab=96.27  E-value=0.0042  Score=51.31  Aligned_cols=25  Identities=20%  Similarity=0.411  Sum_probs=22.4

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +.+.|.|++|+|||++++.|++.+-
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3688999999999999999999864

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.27  E-value=0.0039  Score=51.75  Aligned_cols=25  Identities=12%  Similarity=0.292  Sum_probs=22.4

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +|..+.|.||+|+||+++++.+.+.
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            5678899999999999999999765

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]

Probab=96.26  E-value=0.021  Score=57.56  Aligned_cols=52  Identities=10%  Similarity=0.216  Sum_probs=31.4

Q ss_pred             CCCeEEEEeCCCCCCh--hh-HHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHH
Q psy1694         177 CDRAIFIFDEVDKFPK--GL-LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFL  234 (247)
Q Consensus       177 ~~~~vlilDEiek~~~--~~-~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~  234 (247)
                      ..++++||||++.=+.  ++ +.-++.++...+    -|.+  ++|+..+..++.+.+.+.
T Consensus       161 s~ys~vIiDEaHERSl~tDilLgllk~~~~~rr----~DLK--iIimSATld~~rfs~~f~  215 (845)
T COG1643         161 SGYSVVIIDEAHERSLNTDILLGLLKDLLARRR----DDLK--LIIMSATLDAERFSAYFG  215 (845)
T ss_pred             ccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcC----CCce--EEEEecccCHHHHHHHcC
Confidence            3569999999976443  33 333333344332    1244  677777888887776653

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA

Probab=96.26  E-value=0.024  Score=59.51  Aligned_cols=17  Identities=24%  Similarity=0.399  Sum_probs=14.9

Q ss_pred             EEEEeecCCChHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTD  125 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~  125 (247)
                      ++++.|+||+|||+..=
T Consensus        84 vvii~g~TGSGKTTqlP  100 (1283)
T TIGR01967        84 VVIIAGETGSGKTTQLP  100 (1283)
T ss_pred             eEEEeCCCCCCcHHHHH
Confidence            78999999999999653

This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=96.26  E-value=0.019  Score=48.53  Aligned_cols=28  Identities=21%  Similarity=0.339  Sum_probs=23.4

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +..++++.||||+|||++|..++.+...
T Consensus        22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~   49 (225)
T PRK09361         22 RGTITQIYGPPGSGKTNICLQLAVEAAK   49 (225)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3347899999999999999999887554

>PTZ00424 helicase 45; Provisional

Probab=96.25  E-value=0.087  Score=48.31  Aligned_cols=22  Identities=18%  Similarity=0.061  Sum_probs=16.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+++.+|||+|||.++...+-.
T Consensus        67 d~ii~apTGsGKT~~~~l~~l~   88 (401)
T PTZ00424         67 DTIGQAQSGTGKTATFVIAALQ   88 (401)
T ss_pred             CEEEECCCCChHHHHHHHHHHH
Confidence            3578999999999877654333

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=96.25  E-value=0.031  Score=45.75  Aligned_cols=22  Identities=18%  Similarity=0.282  Sum_probs=20.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+++.|+||+|||+.|..++..
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~   24 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQ   24 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHH
Confidence            4789999999999999999876

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=96.24  E-value=0.052  Score=43.69  Aligned_cols=28  Identities=21%  Similarity=0.230  Sum_probs=22.7

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .|....++||.|+|||.+.++++-.+..
T Consensus        20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~   47 (162)
T cd03227          20 EGSLTIITGPNGSGKSTILDAIGLALGG   47 (162)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3446788999999999999998766544

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=96.24  E-value=0.049  Score=46.19  Aligned_cols=23  Identities=13%  Similarity=0.062  Sum_probs=20.0

Q ss_pred             eEEEEeecCCChHHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~  130 (247)
                      -.+.++||+|.|||++.+.++-.
T Consensus        31 ~~~~l~Gpn~sGKstllr~i~~~   53 (216)
T cd03284          31 QILLITGPNMAGKSTYLRQVALI   53 (216)
T ss_pred             eEEEEECCCCCChHHHHHHHHHH
Confidence            35789999999999999999754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=96.24  E-value=0.0035  Score=51.32  Aligned_cols=29  Identities=17%  Similarity=0.320  Sum_probs=23.5

Q ss_pred             cCCceEEEEEeCCChHHHHHHHHHHHHcC
Q psy1694         212 SFQNTIFLFLSNSGGTEIMNTFLELRKSG  240 (247)
Q Consensus       212 ~~~~~ifI~tSN~g~~~i~~~~~~~~~~g  240 (247)
                      .+.+.+.|=|+|..++++...+.+.+..+
T Consensus       129 ~~~~v~evdtt~~s~ee~~~~i~~ii~~~  157 (180)
T COG1936         129 RFEAVIEVDTTNRSPEEVAEEIIDIIGGG  157 (180)
T ss_pred             hcCceEEEECCCCCHHHHHHHHHHHHccc
Confidence            44678888899999999998888887743

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.23  E-value=0.06  Score=54.51  Aligned_cols=40  Identities=15%  Similarity=0.350  Sum_probs=26.7

Q ss_pred             CCeEEEEeCCCCCCh-hhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         178 DRAIFIFDEVDKFPK-GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       178 ~~~vlilDEiek~~~-~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      ..-++|||+++.++. .+.+.|..++...+       .+..+|++|..
T Consensus       121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~-------~~~~lv~~sR~  161 (903)
T PRK04841        121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQP-------ENLTLVVLSRN  161 (903)
T ss_pred             CCEEEEEeCcCcCCChHHHHHHHHHHHhCC-------CCeEEEEEeCC
Confidence            346889999999974 44556666666533       45566667754

>PRK00300 gmk guanylate kinase; Provisional

Probab=96.23  E-value=0.0042  Score=51.72  Aligned_cols=25  Identities=28%  Similarity=0.422  Sum_probs=21.8

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +..+.+.||+|+|||++++.++..+
T Consensus         5 g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          5 GLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3468899999999999999998874

>PRK04182 cytidylate kinase; Provisional

Probab=96.23  E-value=0.004  Score=50.35  Aligned_cols=23  Identities=30%  Similarity=0.687  Sum_probs=21.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.|++|+|||++|+.+|+.+
T Consensus         2 ~I~i~G~~GsGKstia~~la~~l   24 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            57899999999999999999874

>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot)

Probab=96.22  E-value=0.004  Score=51.81  Aligned_cols=19  Identities=32%  Similarity=0.539  Sum_probs=13.6

Q ss_pred             EEEEeecCCChHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFI  127 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~l  127 (247)
                      ..+++|.||+|||+.|-..
T Consensus         2 I~~~~G~pGsGKS~~av~~   20 (193)
T PF05707_consen    2 IYLITGKPGSGKSYYAVSY   20 (193)
T ss_dssp             EEEEE--TTSSHHHHHHHH
T ss_pred             EEEEEcCCCCcHhHHHHHH
Confidence            4678999999999987544

Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.

>PRK00279 adk adenylate kinase; Reviewed

Probab=96.22  E-value=0.0039  Score=52.64  Aligned_cols=22  Identities=36%  Similarity=0.619  Sum_probs=20.3

Q ss_pred             EEEeecCCChHHHHHHHHHHHh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++++|+||+|||++|+.||+.+
T Consensus         3 I~v~G~pGsGKsT~a~~la~~~   24 (215)
T PRK00279          3 LILLGPPGAGKGTQAKFIAEKY   24 (215)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6889999999999999999883

>TIGR00376 DNA helicase, putative

Probab=96.21  E-value=0.021  Score=56.20  Aligned_cols=25  Identities=32%  Similarity=0.533  Sum_probs=21.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .++++||||||||+++..+..++..
T Consensus       175 ~~lI~GpPGTGKT~t~~~ii~~~~~  199 (637)
T TIGR00376       175 LFLIHGPPGTGKTRTLVELIRQLVK  199 (637)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            5679999999999999888777655

The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=96.21  E-value=0.0042  Score=50.88  Aligned_cols=25  Identities=24%  Similarity=0.372  Sum_probs=22.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+.|.|++|+|||++.+.+|+.|.-
T Consensus         4 ~IvLiG~mGaGKSTIGr~LAk~L~~   28 (172)
T COG0703           4 NIVLIGFMGAGKSTIGRALAKALNL   28 (172)
T ss_pred             cEEEEcCCCCCHhHHHHHHHHHcCC
Confidence            5788999999999999999999643

>PRK04328 hypothetical protein; Provisional

Probab=96.20  E-value=0.025  Score=49.05  Aligned_cols=22  Identities=32%  Similarity=0.517  Sum_probs=18.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+++.||||+|||+++..++..
T Consensus        25 ~ili~G~pGsGKT~l~~~fl~~   46 (249)
T PRK04328         25 VVLLSGGPGTGKSIFSQQFLWN   46 (249)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999998776555

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.19  E-value=0.0044  Score=49.82  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=17.5

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +.|.|++|||||++++.|+++
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            578999999999999999887

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.18  E-value=0.0037  Score=51.53  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=20.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.|.||+|+|||++++.|+..+
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57889999999999999997763

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=96.18  E-value=0.0053  Score=50.61  Aligned_cols=26  Identities=19%  Similarity=0.447  Sum_probs=23.2

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +.+.|.|++|+|||+.++.|++++-.
T Consensus         4 ~~IvieG~~GsGKsT~~~~L~~~l~~   29 (195)
T TIGR00041         4 MFIVIEGIDGAGKTTQANLLKKLLQE   29 (195)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            46889999999999999999999754

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.18  E-value=0.004  Score=51.68  Aligned_cols=22  Identities=32%  Similarity=0.585  Sum_probs=20.2

Q ss_pred             EEEeecCCChHHHHHHHHHHHh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +.+.||+|+|||++++.|+..+
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999998886

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=96.17  E-value=0.027  Score=46.07  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=20.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+|||++.++|+..+
T Consensus        27 ~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          27 IVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999997753

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=96.17  E-value=0.085  Score=43.73  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=20.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+|||++.++|+..+
T Consensus        37 ~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          37 LTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999998765

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>KOG1051|consensus

Probab=96.17  E-value=0.016  Score=58.49  Aligned_cols=117  Identities=14%  Similarity=0.210  Sum_probs=70.0

Q ss_pred             hhcCCh-HHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccc
Q psy1694          78 QHVHGQ-ELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRI  151 (247)
Q Consensus        78 ~~l~Gq-~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l  151 (247)
                      ..++|. +..++.+.+.+.+.-.+        +-+|.|+||+|||.++.-+++-.-.   ...     ...++.+++..+
T Consensus       186 dPvigr~deeirRvi~iL~Rrtk~--------NPvLVG~~gvgktaiv~gla~ri~~---G~vp~~l~~~~l~~l~~g~l  254 (898)
T KOG1051|consen  186 DPVIGRHDEEIRRVIEILSRKTKN--------NPVLVGEPGVGKTAIVEGLAQRIAT---GDVPETLKDKKLIALDFGSL  254 (898)
T ss_pred             CCccCCchHHHHHHHHHHhccCCC--------CceEEecCCCCchhHHHHHHHHhhc---CCCCccccccceEEEEhhhc
Confidence            357887 77777777777653222        2378999999999999999888654   222     234444444332


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC--------hhhHHHHHhhcccCc
Q psy1694         152 HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP--------KGLLDVIIPFIDHHA  206 (247)
Q Consensus       152 ~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~--------~~~~~~Ll~~Le~~~  206 (247)
                      . +...+.+.+++.++..++..-...++-|+++||++-+-        .+..+.|.+.+..+.
T Consensus       255 ~-aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~  316 (898)
T KOG1051|consen  255 V-AGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGG  316 (898)
T ss_pred             c-cCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcCC
Confidence            1 11222233444444444322123456788899997652        256778888887763

>KOG2680|consensus

Probab=96.17  E-value=0.01  Score=52.92  Aligned_cols=68  Identities=22%  Similarity=0.209  Sum_probs=46.6

Q ss_pred             hhcCChHHHHHHH---HHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          78 QHVHGQELAISHI---CGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        78 ~~l~Gq~~a~~~l---~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      ..++||-.|.+..   .+.++.   ++.   ...++++.|+||+|||.+|-.+++.|-      ...||..+.-++++..
T Consensus        40 ~GmVGQ~~AR~Aagvi~kmi~e---gki---aGraiLiaG~pgtGKtAiAmg~sksLG------~~tpF~~i~gSEI~Sl  107 (454)
T KOG2680|consen   40 EGMVGQVKARKAAGVILKMIRE---GKI---AGRAILIAGQPGTGKTAIAMGMSKSLG------DDTPFTSISGSEIYSL  107 (454)
T ss_pred             ccchhhHHHHHHhHHHHHHHHc---Ccc---cceEEEEecCCCCCceeeeeehhhhhC------CCCceeeeecceeeee
Confidence            3589998776543   333332   211   223689999999999999999988853      3578988887777544


Q ss_pred             CCC
Q psy1694         155 NEN  157 (247)
Q Consensus       155 ~~~  157 (247)
                      +.+
T Consensus       108 Ems  110 (454)
T KOG2680|consen  108 EMS  110 (454)
T ss_pred             ccc
Confidence            443

>PLN02459 probable adenylate kinase

Probab=96.16  E-value=0.0052  Score=53.74  Aligned_cols=26  Identities=19%  Similarity=0.363  Sum_probs=22.8

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +|+.++|.||||+||++.|+.+++.+
T Consensus        28 ~~~~ii~~G~PGsGK~T~a~~la~~~   53 (261)
T PLN02459         28 RNVNWVFLGCPGVGKGTYASRLSKLL   53 (261)
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHh
Confidence            55678889999999999999999873

>PHA01747 putative ATP-dependent protease

Probab=96.15  E-value=0.015  Score=53.08  Aligned_cols=100  Identities=14%  Similarity=0.193  Sum_probs=61.1

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHH---hhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCe
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSS---IFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRA  180 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~---l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~  180 (247)
                      .+.+.+++=.||.|||||++-+-+.+-   .++   .|...      .+.+++...          .+ ..|.+  +.+.
T Consensus       187 ~~~NyNliELgPRGTGKS~~f~eis~fsp~~iS---GG~~T------vA~LFyN~~----------t~-~~GLV--g~~D  244 (425)
T PHA01747        187 SKRPVHIIELSNRGTGKTTTFVILQELFNFRYY---TEPPT------YANLVYDAK----------TN-ALGLV--FLSN  244 (425)
T ss_pred             CCCCeeEEEecCCCCChhhHHHHhhhcCCceee---CCCCc------hHHheEecC----------CC-ceeEE--eecc
Confidence            445667777899999999999988441   111   11100      011111000          00 00111  2347


Q ss_pred             EEEEeCCCCCC----hhhHHHHHhhcccCccccccc--------CCceEEEEEeCCC
Q psy1694         181 IFIFDEVDKFP----KGLLDVIIPFIDHHAVYNQIS--------FQNTIFLFLSNSG  225 (247)
Q Consensus       181 vlilDEiek~~----~~~~~~Ll~~Le~~~~~~~~~--------~~~~ifI~tSN~g  225 (247)
                      +|+|||+....    .++.+.|+..|+.+.+..+..        .+.+-++|.-|..
T Consensus       245 ~VaFDEVa~i~f~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~asiVf~GNin  301 (425)
T PHA01747        245 GLIFDEIQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNPD  301 (425)
T ss_pred             EEEEEccccccCCCHHHHHHHHHHHhhcceeecCCCCcccchhhccceeEEEecCCC
Confidence            99999998864    478899999999998887753        1266788877765

>TIGR01351 adk adenylate kinases

Probab=96.14  E-value=0.0043  Score=52.21  Aligned_cols=21  Identities=33%  Similarity=0.525  Sum_probs=19.5

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.||||+|||++|+.||+.
T Consensus         2 I~i~G~pGsGKsT~a~~La~~   22 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEK   22 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999887

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=96.12  E-value=0.0053  Score=50.56  Aligned_cols=24  Identities=17%  Similarity=0.354  Sum_probs=21.3

Q ss_pred             EEEeecCCChHHHHHHHHHHHhhc
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +.+.|+||+|||++|+.|++.+-.
T Consensus         2 i~i~G~sgsGKttla~~l~~~l~~   25 (179)
T cd02028           2 VGIAGPSGSGKTTFAKKLSNQLRV   25 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            578999999999999999998643

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=96.12  E-value=0.005  Score=49.44  Aligned_cols=23  Identities=30%  Similarity=0.684  Sum_probs=20.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.|++|+|||++|+.+++.+
T Consensus         2 iI~i~G~~GSGKstia~~la~~l   24 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKL   24 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            57899999999999999999874

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PHA02624 large T antigen; Provisional

Probab=96.12  E-value=0.0099  Score=57.59  Aligned_cols=28  Identities=14%  Similarity=0.063  Sum_probs=24.0

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +..+++|+||+|||||+++.+|.+.+-+
T Consensus       430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G  457 (647)
T PHA02624        430 KRRYWLFKGPVNSGKTTLAAALLDLCGG  457 (647)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            3448999999999999999999988633

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.11  E-value=0.033  Score=49.58  Aligned_cols=28  Identities=21%  Similarity=0.443  Sum_probs=24.0

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+.++.+.|++|+|||+++..++..+..
T Consensus        33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~   60 (300)
T TIGR00750        33 NAHRVGITGTPGAGKSTLLEALGMELRR   60 (300)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4557888999999999999999988654

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=96.10  E-value=0.071  Score=45.45  Aligned_cols=26  Identities=15%  Similarity=0.080  Sum_probs=21.6

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +-.++|+||.|.|||++.+.++...+
T Consensus        30 ~~~~~l~G~n~~GKstll~~i~~~~~   55 (222)
T cd03285          30 SRFLIITGPNMGGKSTYIRQIGVIVL   55 (222)
T ss_pred             CeEEEEECCCCCChHHHHHHHHHHHH
Confidence            34689999999999999999886643

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase

Probab=96.10  E-value=0.1  Score=47.50  Aligned_cols=108  Identities=15%  Similarity=0.152  Sum_probs=56.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee-cccccCCCCChHH----------HHHHHHHHHHHHHHHhC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-NSRIHFPNENHVS----------LYRLQLTNWIISNVTAC  177 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~-~~~l~~~~~~~v~----------~~~~~l~~~~~~~l~~~  177 (247)
                      ++++.|++|+|||++.+++...+..   .   ...+.+. ..|+..+.+..+.          .-.-.+.+.+...++. 
T Consensus       180 ~ili~G~tGsGKTTll~al~~~i~~---~---~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~-  252 (340)
T TIGR03819       180 AFLISGGTGSGKTTLLSALLALVAP---D---ERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRM-  252 (340)
T ss_pred             eEEEECCCCCCHHHHHHHHHccCCC---C---CcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhcc-
Confidence            7899999999999999999776433   1   1111111 2222211111000          0000122334444444 


Q ss_pred             CCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHH
Q psy1694         178 DRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF  233 (247)
Q Consensus       178 ~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~  233 (247)
                      ..+.+++.|+-.  ++..+ +++.+..+.       .-++.=+-+|...+.+.+..
T Consensus       253 ~PD~IivGEiRg--~Ea~~-~l~a~~tGh-------~G~~tTiHA~s~~~~~~RL~  298 (340)
T TIGR03819       253 RPDRIVVGEVRG--AEVVD-LLAALNTGH-------DGGAGTLHANSPADVPARLE  298 (340)
T ss_pred             CCCeEEEeCcCc--HHHHH-HHHHHHcCC-------CceEEeeCCCCHHHHHHHHH
Confidence            447888999963  44444 467777653       11233344566666666543

Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.

>PRK15453 phosphoribulokinase; Provisional

Probab=96.07  E-value=0.0086  Score=52.96  Aligned_cols=27  Identities=22%  Similarity=0.241  Sum_probs=23.5

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ++.++.+.|.||+|||++|+.+++.+-
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~if~   30 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEKIFR   30 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            555789999999999999999998753

>PRK00698 tmk thymidylate kinase; Validated

Probab=96.00  E-value=0.0072  Score=50.05  Aligned_cols=27  Identities=19%  Similarity=0.453  Sum_probs=23.5

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +..+.|.|++|+|||++++.|++.+-.
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~   29 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLEQ   29 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            457889999999999999999998643

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=95.99  E-value=0.0061  Score=49.26  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=20.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+++.|++|+|||++|+.+|+.+
T Consensus         4 ~i~~~G~~GsGKst~~~~la~~l   26 (171)
T PRK03731          4 PLFLVGARGCGKTTVGMALAQAL   26 (171)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999884

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=95.98  E-value=0.0068  Score=49.61  Aligned_cols=25  Identities=20%  Similarity=0.464  Sum_probs=22.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+.|.|++|+|||++++.|++++-.
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~~   26 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLEA   26 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4688999999999999999999744

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK14526 adenylate kinase; Provisional

Probab=95.97  E-value=0.0065  Score=51.49  Aligned_cols=22  Identities=23%  Similarity=0.575  Sum_probs=19.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .++|.||||+|||++++.|++.
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~   23 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNE   23 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999999876

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=95.96  E-value=0.082  Score=46.15  Aligned_cols=28  Identities=29%  Similarity=0.577  Sum_probs=23.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +..++=++||||.|||++...+.+.+..
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~   55 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRE   55 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhh
Confidence            4557889999999999999999999765

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>TIGR00017 cmk cytidylate kinase

Probab=95.94  E-value=0.0073  Score=51.39  Aligned_cols=24  Identities=25%  Similarity=0.549  Sum_probs=21.6

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +.+.+.||+|+|||++|+.|++.+
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~   26 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKL   26 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999874

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>KOG0922|consensus

Probab=95.94  E-value=0.059  Score=52.35  Aligned_cols=42  Identities=14%  Similarity=0.304  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHH-HHHHHHHHhhc
Q psy1694          86 AISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNY-VTDFIVSSIFK  133 (247)
Q Consensus        86 a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~-~A~~la~~l~~  133 (247)
                      .+.+..+.+-..+..+.      ++++.|++|+|||| +-+.+++.-+.
T Consensus        51 PI~~~r~~il~~ve~nq------vlIviGeTGsGKSTQipQyL~eaG~~   93 (674)
T KOG0922|consen   51 PIYKYRDQILYAVEDNQ------VLIVIGETGSGKSTQIPQYLAEAGFA   93 (674)
T ss_pred             CHHHHHHHHHHHHHHCC------EEEEEcCCCCCccccHhHHHHhcccc
Confidence            33444444444444445      78899999999997 33555554333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	247
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 8e-06
 Identities = 33/265 (12%), Positives = 68/265 (25%), Gaps = 85/265 (32%)

Query: 48  KFLNGFGGGEACTDKFIQSSNVRV--LEEQLKQHVHGQELAISHICGALKNHFQNRYHN- 104
                    E      ++  + R   L  ++          +S I           + N 
Sbjct: 293 HHSMTLTPDEV-KSLLLKYLDCRPQDLPREVLT---TNPRRLS-IIAESIRDGLATWDNW 347

Query: 105 --------TKALAISLHGL-PGTGKNYVTDFIV--------------------------- 128
                   T  +  SL+ L P   +       V                           
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Query: 129 ------SSIFKRYKDKGTSRFVHKFNSRIHFPNEN----HVSL---YRLQLT--NWIISN 173
                  S+ ++   + T   +      +    EN    H S+   Y +  T  +  +  
Sbjct: 408 VNKLHKYSLVEKQPKESTIS-IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466

Query: 174 VTACDRAIFIF-----------DEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS 222
               D+  +             + +  F    LD    F++      +I   +T     +
Sbjct: 467 PYL-DQYFYSHIGHHLKNIEHPERMTLFRMVFLD--FRFLE-----QKIRHDST-----A 513

Query: 223 NSGGTEIMNTFLELRKSGERYITIH 247
            +    I+NT  +L+   + YI  +
Sbjct: 514 WNASGSILNTLQQLKFY-KPYICDN 537

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 6e-04
 Identities = 27/163 (16%), Positives = 51/163 (31%), Gaps = 43/163 (26%)

Query: 60  TDKFIQSSNVRVLEEQL--KQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPG 117
           T  +I+  +    + Q+  K +V   +  +      L+              + + G+ G
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-----KLRQALLELRPAKN---VLIDGVLG 160

Query: 118 TGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF-----PNENHVSLYRLQ-LTNWII 171
           +GK +V   +  S           +   K + +I +      N     L  LQ L   I 
Sbjct: 161 SGKTWVALDVCLS----------YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 172 SNVTA-CDRAIFIFDEVD-------------KFPKGLL---DV 197
            N T+  D +  I   +               +   LL   +V
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	247
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	99.84
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.84
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.82
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.81
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	99.77
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	99.77
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	99.73
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	99.69
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.69
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	99.66
3co5_A	143	Putative two-component system transcriptional RES	99.66
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.66
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	99.63
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.59
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	99.58
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.57
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.56
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.5
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.48
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.48
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.47
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.47
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.47
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.45
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.45
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.44
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.44
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.44
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.42
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.42
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.42
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.42
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.41
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.41
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.41
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	99.41
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.4
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	99.4
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.4
2chq_A	319	Replication factor C small subunit; DNA-binding pr	99.39
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	99.38
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.38
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.36
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	99.36
3pvs_A	447	Replication-associated recombination protein A; ma	99.36
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.34
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.33
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.3
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	99.28
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.28
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.28
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	99.28
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	99.26
2r44_A	331	Uncharacterized protein; putative ATPase, structur	99.26
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.25
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	99.23
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.22
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.21
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.19
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.19
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	99.19
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.18
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	99.18
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	99.18
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.16
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	99.16
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.16
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.15
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	99.14
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	99.13
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	99.13
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.11
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.1
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.04
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.03
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.03
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.03
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.02
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.02
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.0
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.98
2qgz_A	308	Helicase loader, putative primosome component; str	98.97
3bos_A	242	Putative DNA replication factor; P-loop containing	98.96
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.93
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.88
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	98.87
3f8t_A	506	Predicted ATPase involved in replication control,	98.84
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.78
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.78
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	98.57
1tue_A	212	Replication protein E1; helicase, replication, E1E	98.55
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	98.43
2fna_A	357	Conserved hypothetical protein; structural genomic	98.23
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.21
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	98.18
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	98.17
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	98.13
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.13
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	98.04
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	98.0
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.92
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	97.87
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.73
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	97.71
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.71
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.7
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.69
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	97.67
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.65
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.57
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.56
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	97.54
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.48
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.47
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.36
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.34
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.31
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.3
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.27
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.26
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.25
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.24
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.22
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.21
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	97.21
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.2
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	97.18
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.15
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.15
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.15
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.15
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.13
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.13
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.13
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.12
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.11
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.08
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.07
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.06
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.05
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.04
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.04
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.04
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.04
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.03
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.03
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.02
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.01
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.01
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.01
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.0
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.99
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.99
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.99
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.99
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.98
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.98
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.98
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.97
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.95
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.94
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.93
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.92
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.91
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.91
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.88
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	96.87
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.85
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.85
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.84
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.84
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.83
1via_A	175	Shikimate kinase; structural genomics, transferase	96.82
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.8
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.8
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.8
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.79
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.78
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.78
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.78
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.77
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.76
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	96.76
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.76
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.75
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.74
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.74
2xxa_A	433	Signal recognition particle protein; protein trans	96.73
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.73
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.72
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.71
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.7
1hv8_A	367	Putative ATP-dependent RNA helicase MJ0669; RNA-bi	96.7
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.7
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.69
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.69
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.69
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.68
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.65
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.65
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.64
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.63
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.62
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.62
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.61
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.6
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.59
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	96.58
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.58
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.58
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.57
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.56
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.55
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.53
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.53
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.51
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.5
3bor_A	237	Human initiation factor 4A-II; translation initiat	96.49
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.48
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.48
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.47
3b6e_A	216	Interferon-induced helicase C domain-containing P;	96.47
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	96.47
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.47
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.44
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.42
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.41
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.41
2og2_A	359	Putative signal recognition particle receptor; nuc	96.4
3ber_A	249	Probable ATP-dependent RNA helicase DDX47; DEAD, A	96.4
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	96.4
1q0u_A	219	Bstdead; DEAD protein, RNA binding protein; 1.85A	96.39
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.37
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.32
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.3
3dkp_A	245	Probable ATP-dependent RNA helicase DDX52; DEAD, A	96.3
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.28
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.24
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.24
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.23
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.23
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.21
2eyq_A	1151	TRCF, transcription-repair coupling factor; MFD, S	96.21
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.2
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.19
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.19
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.18
1rif_A	282	DAR protein, DNA helicase UVSW; bacteriophage, REC	96.18
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.18
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.17
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.16
3fmo_B	300	ATP-dependent RNA helicase DDX19B; nuclear porin,	96.15
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.14
3fe2_A	242	Probable ATP-dependent RNA helicase DDX5; DEAD, AD	96.14
3pey_A	395	ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A	96.13
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.09
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.09
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.07
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.04
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.0
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.99
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.99
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	95.98
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	95.97
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.96
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.94
1xti_A	391	Probable ATP-dependent RNA helicase P47; alpha-bet	95.94
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.93
3fht_A	412	ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box	95.93
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.88
3io5_A	333	Recombination and repair protein; storage dimer, i	95.84
2oca_A	510	DAR protein, ATP-dependent DNA helicase UVSW; ATP-	95.8
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.79
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.79
3fho_A	508	ATP-dependent RNA helicase DBP5; mRNA export, ATPa	95.78
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.78
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	95.76
1fuu_A	394	Yeast initiation factor 4A; IF4A, helicase, DEAD-b	95.73
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.71
3iuy_A	228	Probable ATP-dependent RNA helicase DDX53; REC-A-l	95.7
2oxc_A	230	Probable ATP-dependent RNA helicase DDX20; DEAD, s	95.65
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.64
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.64
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.63
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.61
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.6
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.56
1s2m_A	400	Putative ATP-dependent RNA helicase DHH1; ATP-bind	95.55
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.53
3fmp_B	479	ATP-dependent RNA helicase DDX19B; nuclear porin,	95.49
3ly5_A	262	ATP-dependent RNA helicase DDX18; alpha-beta, stru	95.48
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.48
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	95.48
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.45
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	95.43
2z0m_A	337	337AA long hypothetical ATP-dependent RNA helicase	95.42
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.41
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.39
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.36
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.36
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.35
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.34
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.33
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	95.32
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.31
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.31
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	95.3
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.29
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	95.28
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.26
2v6i_A	431	RNA helicase; membrane, hydrolase, transmembrane,	95.17
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.14
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.08
1gm5_A	780	RECG; helicase, replication restart; HET: DNA ADP;	95.07
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.06
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	95.06
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	94.98
2j0s_A	410	ATP-dependent RNA helicase DDX48; mRNA processing,	94.97
2fwr_A	472	DNA repair protein RAD25; DNA unwinding, XPB, DNA	94.92
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	94.87
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	94.86
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	94.72
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	94.69
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	94.63
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.63
3kta_A	182	Chromosome segregation protein SMC; structural mai	94.61
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	94.56
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	94.54
2ged_A	193	SR-beta, signal recognition particle receptor beta	94.5
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	94.46
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	94.44
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.37
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	94.35
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.32
2hf9_A	226	Probable hydrogenase nickel incorporation protein	94.25
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	94.2
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	94.16
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	94.15
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	94.13
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	94.11
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	94.1
1z63_A	500	Helicase of the SNF2/RAD54 hamily; protein-DNA com	94.04
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	94.04
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	94.01
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	93.98
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	93.95
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	93.94
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	93.93
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	93.92
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	93.91
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	93.91
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	93.89
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	93.85
1b0u_A	262	Histidine permease; ABC transporter, transport pro	93.77
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	93.71
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	93.69
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	93.68
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	93.68
3dmq_A	968	RNA polymerase-associated protein RAPA; SWF2/SNF2,	93.65
4a4z_A	997	Antiviral helicase SKI2; hydrolase, ATPase, mRNA d	93.64
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	93.63
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	93.62
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	93.6
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	93.6
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	93.59
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	93.59
1g6h_A	257	High-affinity branched-chain amino acid transport	93.59
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	93.58
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	93.57
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	93.54
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	93.54
1wp9_A	494	ATP-dependent RNA helicase, putative; ATPase, DNA	93.52
1ji0_A	240	ABC transporter; ATP binding protein, structural g	93.5
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	93.5
3l9o_A	1108	ATP-dependent RNA helicase DOB1; REC-A fold, winge	93.49
1p9r_A	418	General secretion pathway protein E; bacterial typ	93.49
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	93.48
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	93.47
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	93.47
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	93.46
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	93.45
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	93.44
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	93.44
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	93.43
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	93.42
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	93.4
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	93.39
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	93.38
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	93.37
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	93.36
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	93.35
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	93.34
1sgw_A	214	Putative ABC transporter; structural genomics, P p	93.34
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	93.33
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	93.33
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	93.31
2ghi_A	260	Transport protein; multidrug resistance protein, M	93.31
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	93.3
1oyw_A	523	RECQ helicase, ATP-dependent DNA helicase; winged	93.27
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	93.26
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	93.21
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	93.2
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	93.2
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	93.19
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	93.19
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	93.16
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	93.15
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	93.15
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	93.14
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	93.12
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	93.12
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	93.12
2wji_A	165	Ferrous iron transport protein B homolog; membrane	93.1
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	93.08
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	93.08
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	93.06
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	93.04
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	93.04
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	92.99
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	92.98
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	92.96
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	92.94
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	92.89
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	92.87
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	92.84
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	92.79
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	92.79
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	92.79
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	92.78
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	92.78
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	92.77
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	92.76
2xgj_A	1010	ATP-dependent RNA helicase DOB1; hydrolase-RNA com	92.74
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	92.73
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	92.72
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	92.71
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	92.68
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	92.63
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	92.61
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	92.6
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	92.56
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	92.52
2db3_A	434	ATP-dependent RNA helicase VASA; DEAD-BOX, protein	92.51
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	92.38
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	92.37
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	92.35
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	92.33
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	92.3
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	92.26
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	92.25
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	92.24
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	92.23
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	92.19
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	92.19
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	92.18
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	92.16
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	92.14
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	92.13
3ice_A	422	Transcription termination factor RHO; transcriptio	92.07
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	92.07
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	92.05
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	92.01
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	92.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	91.97
2zpa_A	671	Uncharacterized protein YPFI; RNA modification enz	91.96
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	91.96
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	91.91
3h1t_A	590	Type I site-specific restriction-modification syst	91.91
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	91.9
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	91.87
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	91.86
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	91.85
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	91.84
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	91.83
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	91.81
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	91.81
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	91.79
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	91.78
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	91.76
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	91.74
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	91.71
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	91.69
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	91.66
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	91.65
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	91.63
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	91.62
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	91.59
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	91.59
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	91.59
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	91.55
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	91.55
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	91.55
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	91.51
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	91.49
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	91.46
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	91.46
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	91.44
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	91.41
2fh5_B	214	SR-beta, signal recognition particle receptor beta	91.4
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	91.39

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=99.84  E-value=4.1e-21  Score=168.34  Aligned_cols=156  Identities=19%  Similarity=0.352  Sum_probs=120.2

Q ss_pred             cHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694          68 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK  146 (247)
Q Consensus        68 ~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~  146 (247)
                      .+..+++.+.+.++||+.+++.+...+......-..+.+|. .++|+||||||||++|+++|+.+..   .  ..+++.+
T Consensus         7 ~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~---~--~~~~~~~   81 (311)
T 4fcw_A            7 KLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD---T--EEAMIRI   81 (311)
T ss_dssp             HHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS---C--GGGEEEE
T ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC---C--CcceEEe
Confidence            35678899999999999999999999987654322255675 6999999999999999999998754   2  3578888


Q ss_pred             ecccccC---------CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccC
Q psy1694         147 FNSRIHF---------PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF  213 (247)
Q Consensus       147 ~~~~l~~---------~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~  213 (247)
                      +|+.+..         ..++.++ +..  .+.+.+.+..++++++||||++++++.+++.|+++|+++.+.+.    +++
T Consensus        82 ~~~~~~~~~~~~~l~g~~~~~~~-~~~--~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~  158 (311)
T 4fcw_A           82 DMTEYMEKHAVSRLIGAPPGYVG-YEE--GGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDF  158 (311)
T ss_dssp             EGGGCCSTTHHHHHHCCCTTSTT-TTT--CCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred             ecccccccccHHHhcCCCCcccc-ccc--cchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEEC
Confidence            8865421         1122211 110  13455667788899999999999999999999999999876543    688


Q ss_pred             CceEEEEEeCCChHHHHH
Q psy1694         214 QNTIFLFLSNSGGTEIMN  231 (247)
Q Consensus       214 ~~~ifI~tSN~g~~~i~~  231 (247)
                      ++++||+|||.+++.|++
T Consensus       159 ~~~iiI~ttn~~~~~i~~  176 (311)
T 4fcw_A          159 RNTVIIMTSNLGSPLILE  176 (311)
T ss_dssp             TTEEEEEEESTTHHHHHT
T ss_pred             CCcEEEEecccCHHHHHh
Confidence            999999999998776655

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.84  E-value=1.8e-20  Score=186.21  Aligned_cols=168  Identities=18%  Similarity=0.304  Sum_probs=125.2

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc
Q psy1694          71 VLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS  149 (247)
Q Consensus        71 ~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~  149 (247)
                      .+++.+...++||+.+++.+..++......-.+|++|. .++|+||||||||++|+++++.++.   .  ..+|+.++|+
T Consensus       551 ~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~---~--~~~~i~i~~~  625 (854)
T 1qvr_A          551 RLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD---T--EEAMIRIDMT  625 (854)
T ss_dssp             SHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS---S--GGGEEEECTT
T ss_pred             HHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC---C--CCcEEEEech
Confidence            35667778899999999999999987654433366776 6999999999999999999999765   2  3588999886


Q ss_pred             cc---------cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccCCce
Q psy1694         150 RI---------HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNT  216 (247)
Q Consensus       150 ~l---------~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~~~~  216 (247)
                      ++         ++.++++++ |..  .+.+.+.+...+++||||||++++++++++.|+++|++++++++    +|++++
T Consensus       626 ~~~~~~~~s~l~g~~~~~~G-~~~--~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~  702 (854)
T 1qvr_A          626 EYMEKHAVSRLIGAPPGYVG-YEE--GGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNT  702 (854)
T ss_dssp             TCCSSGGGGGC-----------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTE
T ss_pred             hccchhHHHHHcCCCCCCcC-ccc--cchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCe
Confidence            54         233344444 222  24566777888899999999999999999999999999987653    589999


Q ss_pred             EEEEEeCCChHHHHH---------HHHHHH---HcCcccccC
Q psy1694         217 IFLFLSNSGGTEIMN---------TFLELR---KSGERYITI  246 (247)
Q Consensus       217 ifI~tSN~g~~~i~~---------~~~~~~---~~g~~Re~~  246 (247)
                      ++|+|||.|++.+.+         .+.+.+   .++.+|+|+
T Consensus       703 iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l  744 (854)
T 1qvr_A          703 VIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEF  744 (854)
T ss_dssp             EEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHH
T ss_pred             EEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHH
Confidence            999999999887754         234444   477777754

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.82  E-value=6.1e-20  Score=180.14  Aligned_cols=147  Identities=18%  Similarity=0.327  Sum_probs=118.4

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee
Q psy1694          69 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF  147 (247)
Q Consensus        69 ~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~  147 (247)
                      ...+++.+...++||+.+++.+.+++.........|.+|. .++|+||||||||++|+++|+.++.   .  ..+|+.++
T Consensus       482 l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~---~--~~~~i~i~  556 (758)
T 3pxi_A          482 LLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG---D--EESMIRID  556 (758)
T ss_dssp             C-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS---C--TTCEEEEE
T ss_pred             HHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC---C--CcceEEEe
Confidence            3457788889999999999999999987654444467887 5999999999999999999999765   2  46899999


Q ss_pred             cccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccCCceEEEEEeC
Q psy1694         148 NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSN  223 (247)
Q Consensus       148 ~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~~~~ifI~tSN  223 (247)
                      |+++.......        .+.+.+.+..++++|||||||+++++++++.|+++|+++.+++.    +++.++++|+|||
T Consensus       557 ~s~~~~~~~~~--------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn  628 (758)
T 3pxi_A          557 MSEYMEKHSTS--------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN  628 (758)
T ss_dssp             GGGGCSSCCCC-----------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred             chhcccccccc--------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence            98875444332        23344567788899999999999999999999999999887653    5889999999999


Q ss_pred             CChHH
Q psy1694         224 SGGTE  228 (247)
Q Consensus       224 ~g~~~  228 (247)
                      .+++.
T Consensus       629 ~~~~~  633 (758)
T 3pxi_A          629 VGASE  633 (758)
T ss_dssp             SSTTC
T ss_pred             CChhh
Confidence            88753

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.81  E-value=1.3e-19  Score=177.62  Aligned_cols=152  Identities=20%  Similarity=0.303  Sum_probs=119.8

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee
Q psy1694          69 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF  147 (247)
Q Consensus        69 ~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~  147 (247)
                      ...+++.+...++||+.+++.+..++.....+-.++++|. .++|+||||||||++|+++|+.+.        .+|+.++
T Consensus       449 l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~--------~~~~~i~  520 (758)
T 1r6b_X          449 LKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--------IELLRFD  520 (758)
T ss_dssp             HHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT--------CEEEEEE
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc--------CCEEEEe
Confidence            4567788888999999999999999886544333366776 599999999999999999999862        3788888


Q ss_pred             cccc---------cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccCC
Q psy1694         148 NSRI---------HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQ  214 (247)
Q Consensus       148 ~~~l---------~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~~  214 (247)
                      |+++         .+.++++++ |..  .+.+.+.+..++++||||||++++++++++.|+++||++.++++    ++++
T Consensus       521 ~s~~~~~~~~~~l~g~~~g~~g-~~~--~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~  597 (758)
T 1r6b_X          521 MSEYMERHTVSRLIGAPPGYVG-FDQ--GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFR  597 (758)
T ss_dssp             GGGCSSSSCCSSSCCCCSCSHH-HHH--TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECT
T ss_pred             chhhcchhhHhhhcCCCCCCcC-ccc--cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecC
Confidence            7654         344556665 332  34556778889999999999999999999999999999876643    5889


Q ss_pred             ceEEEEEeCCChHHHHH
Q psy1694         215 NTIFLFLSNSGGTEIMN  231 (247)
Q Consensus       215 ~~ifI~tSN~g~~~i~~  231 (247)
                      +++||+|||.+.+.+.+
T Consensus       598 ~~~iI~tsN~~~~~~~~  614 (758)
T 1r6b_X          598 NVVLVMTTNAGVRETER  614 (758)
T ss_dssp             TEEEEEEECSSCC----
T ss_pred             CeEEEEecCcchhhhhh
Confidence            99999999998866553

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=99.77  E-value=3.5e-20  Score=168.94  Aligned_cols=192  Identities=15%  Similarity=0.119  Sum_probs=130.3

Q ss_pred             HHHHHhhhhccCcccccc------ceeeeeccCCCCCccccccccHHHHHHHHH---hhcCChHHHHHHHHHHHHHhhhc
Q psy1694          30 GIAIAAGIAYFSPSIINS------KFLNGFGGGEACTDKFIQSSNVRVLEEQLK---QHVHGQELAISHICGALKNHFQN  100 (247)
Q Consensus        30 ~~~~av~a~~~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~---~~l~Gq~~a~~~l~~~l~~~~~~  100 (247)
                      ....++.|++.||+||+.      .+...+.  ++++.+. ...+...++..+.   ..++|++.+++.+.+.+......
T Consensus        83 ~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~--~~l~~~~-l~~~~~~l~~~~~~~~~~~ig~s~~m~~l~~~i~~~a~~  159 (387)
T 1ny5_A           83 TIKTAVEAMKMGAYDFLTKPCMLEEIELTIN--KAIEHRK-LRKENELLRREKDLKEEEYVFESPKMKEILEKIKKISCA  159 (387)
T ss_dssp             CHHHHHHHHTTTCCEEEEESCCHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHhcCceEEecCCCCHHHHHHHHH--HHHHHHH-HHHHHHHhhhhhhhcchhhhhccHHhhHHHHHHHHhcCC
Confidence            467889999999999983      3333333  3322221 1111222333322   24899999999999988886544


Q ss_pred             ccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc---------cCCCCChHHHHHHHHHHHHH
Q psy1694         101 RYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI---------HFPNENHVSLYRLQLTNWII  171 (247)
Q Consensus       101 ~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l---------~~~~~~~v~~~~~~l~~~~~  171 (247)
                      ..      .+++.|++||||+++|+.++..  +   .+...||+.++|+.+         +++..+.   |.+... ...
T Consensus       160 ~~------~vli~Ge~GtGK~~lAr~ih~~--s---~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~---~tga~~-~~~  224 (387)
T 1ny5_A          160 EC------PVLITGESGVGKEVVARLIHKL--S---DRSKEPFVALNVASIPRDIFEAELFGYEKGA---FTGAVS-SKE  224 (387)
T ss_dssp             CS------CEEEECSTTSSHHHHHHHHHHH--S---TTTTSCEEEEETTTSCHHHHHHHHHCBCTTS---STTCCS-CBC
T ss_pred             CC------CeEEecCCCcCHHHHHHHHHHh--c---CCCCCCeEEEecCCCCHHHHHHHhcCCCCCC---CCCccc-ccC
Confidence            43      5699999999999999999654  4   455679999999654         3333322   111100 112


Q ss_pred             HHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc--c--ccCCceEEEEEeCCChHHHHHHHHHHHHcCcccccC
Q psy1694         172 SNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--Q--ISFQNTIFLFLSNSGGTEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       172 ~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~--~--~~~~~~ifI~tSN~g~~~i~~~~~~~~~~g~~Re~~  246 (247)
                      +.+..+.++++|||||+.||+++|.+|+++|+++.+..  +  ....++.+|++||..       +.+.+++|+||+||
T Consensus       225 g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~-------l~~~~~~g~fr~dl  296 (387)
T 1ny5_A          225 GFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRN-------IKELVKEGKFREDL  296 (387)
T ss_dssp             CHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSC-------HHHHHHTTSSCHHH
T ss_pred             CceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCC-------HHHHHHcCCccHHH
Confidence            45677888999999999999999999999999986542  1  112345588988764       44677899999985

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=99.77  E-value=7.6e-19  Score=138.58  Aligned_cols=129  Identities=12%  Similarity=0.140  Sum_probs=96.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++|++.+++.+.+.+......+.      .++|+||||||||++|+++++.  .   .+...+|+ ++|+.+...  . 
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~~~~------~vll~G~~GtGKt~lA~~i~~~--~---~~~~~~~v-~~~~~~~~~--~-   66 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSETDI------AVWLYGAPGTGRMTGARYLHQF--G---RNAQGEFV-YRELTPDNA--P-   66 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCCS------CEEEESSTTSSHHHHHHHHHHS--S---TTTTSCCE-EEECCTTTS--S-
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCC------CEEEECCCCCCHHHHHHHHHHh--C---CccCCCEE-EECCCCCcc--h-
Confidence            489999999999999988765444      6899999999999999999765  2   33356899 998875332  1 


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHHHH
Q psy1694         159 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRK  238 (247)
Q Consensus       159 v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~~~  238 (247)
                                ...+.+..+.++++||||++.+++..|..|+++|+...       .+..+|++||...+       +...
T Consensus        67 ----------~~~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~-------~~~~~I~~t~~~~~-------~~~~  122 (145)
T 3n70_A           67 ----------QLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQEH-------RPFRLIGIGDTSLV-------ELAA  122 (145)
T ss_dssp             ----------CHHHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHSSS-------CSSCEEEEESSCHH-------HHHH
T ss_pred             ----------hhhcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhhcC-------CCEEEEEECCcCHH-------HHHH
Confidence                      11233445567899999999999999999999996543       45568999987544       4455


Q ss_pred             cCcccccC
Q psy1694         239 SGERYITI  246 (247)
Q Consensus       239 ~g~~Re~~  246 (247)
                      +|++|+|+
T Consensus       123 ~~~~~~~L  130 (145)
T 3n70_A          123 SNHIIAEL  130 (145)
T ss_dssp             HSCCCHHH
T ss_pred             cCCCCHHH
Confidence            67777664

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=99.73  E-value=5.2e-18  Score=149.79  Aligned_cols=147  Identities=13%  Similarity=0.149  Sum_probs=103.6

Q ss_pred             hhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc------
Q psy1694          78 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI------  151 (247)
Q Consensus        78 ~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l------  151 (247)
                      ..++|++.+++.+.+.+......+.      .++|+||||||||++|+++++..     .+...||+.++|+.+      
T Consensus         2 ~~iig~s~~~~~~~~~~~~~a~~~~------~vLi~Ge~GtGKt~lAr~i~~~~-----~~~~~~~v~v~~~~~~~~l~~   70 (304)
T 1ojl_A            2 SHMIGSSPAMQHLLNEIAMVAPSDA------TVLIHGDSGTGKELVARALHACS-----ARSDRPLVTLNCAALNESLLE   70 (304)
T ss_dssp             -CCCCCSHHHHHHHHHHHHHCSTTS------CEEEESCTTSCHHHHHHHHHHHS-----SCSSSCCCEEECSSCCHHHHH
T ss_pred             CCcEECCHHHHHHHHHHHHHhCCCC------cEEEECCCCchHHHHHHHHHHhC-----cccCCCeEEEeCCCCChHHHH
Confidence            3589999999999999987754443      68999999999999999998763     334578999998654      


Q ss_pred             ---cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc-c---ccCCceEEEEEeCC
Q psy1694         152 ---HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFLSNS  224 (247)
Q Consensus       152 ---~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-~---~~~~~~ifI~tSN~  224 (247)
                         ++..++.   |.+... ...+.+..+.++++||||++.+++..|.+|+++|+++.+.. +   ....++.+|++||.
T Consensus        71 ~~lfg~~~g~---~tg~~~-~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~  146 (304)
T 1ojl_A           71 SELFGHEKGA---FTGADK-RREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR  146 (304)
T ss_dssp             HHHTCCCSSC---CC---C-CCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred             HHhcCccccc---cCchhh-hhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence               2222221   111111 11133455567899999999999999999999999976432 1   11235679999987


Q ss_pred             ChHHHHHHHHHHHHcCcccccC
Q psy1694         225 GGTEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       225 g~~~i~~~~~~~~~~g~~Re~~  246 (247)
                      .       +.+.+++|++|+||
T Consensus       147 ~-------l~~~v~~g~fr~~L  161 (304)
T 1ojl_A          147 D-------LAEEVSAGRFRQDL  161 (304)
T ss_dssp             C-------HHHHHHHTSSCHHH
T ss_pred             c-------HHHHHHhCCcHHHH
Confidence            5       33556678888765

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=99.69  E-value=6.8e-19  Score=159.47  Aligned_cols=185  Identities=15%  Similarity=0.133  Sum_probs=121.2

Q ss_pred             HHHHhhhhccCccccccc------eeeeeccCCCCCccccccccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCC
Q psy1694          31 IAIAAGIAYFSPSIINSK------FLNGFGGGEACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHN  104 (247)
Q Consensus        31 ~~~av~a~~~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~  104 (247)
                      ...++.|++.||++|+.+      +...+.  +++.... ......     -...++|++.++..+...+........  
T Consensus        84 ~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~--~~l~~~~-~~~~~~-----~~~~~ig~s~~~~~~~~~~~~~a~~~~--  153 (368)
T 3dzd_A           84 VDTAVKAIKKGAYEFLEKPFSVERFLLTIK--HAFEEYS-KKAPPQ-----EEIEFVGEHPKILEIKRLIPKIAKSKA--  153 (368)
T ss_dssp             CHHHHHHHHHTCCEEEESSCCHHHHHHHHH--HHHHHHS-CCCCCC-----CCCCCCCCSHHHHHHHHHHHHHHTSCS--
T ss_pred             HHHHHHHHhcCcceEEeCCCCHHHHHHHHH--HHHHHhh-hhhccc-----ccccccccchHHHHHHhhhhhhhccch--
Confidence            467789999999999832      222221  1111000 000000     012478999999999888887765544  


Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc---------cCCCCChHHHHHHHHHHHHHHHHH
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI---------HFPNENHVSLYRLQLTNWIISNVT  175 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l---------~~~~~~~v~~~~~~l~~~~~~~l~  175 (247)
                          .+++.|++||||+.+|+++++.  +   .+ ..+|+.++|+.+         +++..+.+   ++... .-.+.++
T Consensus       154 ----~vli~GesGtGKe~lAr~ih~~--s---~r-~~~fv~vnc~~~~~~~~~~~lfg~~~g~~---tga~~-~~~g~~~  219 (368)
T 3dzd_A          154 ----PVLITGESGTGKEIVARLIHRY--S---GR-KGAFVDLNCASIPQELAESELFGHEKGAF---TGALT-RKKGKLE  219 (368)
T ss_dssp             ----CEEEECCTTSSHHHHHHHHHHH--H---CC-CSCEEEEESSSSCTTTHHHHHHEECSCSS---SSCCC-CEECHHH
T ss_pred             ----hheEEeCCCchHHHHHHHHHHh--c---cc-cCCcEEEEcccCChHHHHHHhcCcccccc---CCccc-ccCChHh
Confidence                5789999999999999999665  3   22 234999999765         22222111   10000 0124567


Q ss_pred             hCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccCCceEEEEEeCCChHHHHHHHHHHHHcCcccccC
Q psy1694         176 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSGGTEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       176 ~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~~~~ifI~tSN~g~~~i~~~~~~~~~~g~~Re~~  246 (247)
                      .+.++++|||||+.||+.+|.+|+++|+++.+..-    ...-++-+|++||.       .+.+.+++|+||+||
T Consensus       220 ~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~-------~l~~~v~~g~fr~dL  287 (368)
T 3dzd_A          220 LADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNK-------NLEEEIKKGNFREDL  287 (368)
T ss_dssp             HTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESS-------CHHHHHHTTSSCHHH
T ss_pred             hcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCC-------CHHHHHHcCCccHHH
Confidence            78889999999999999999999999999865421    01123458888864       566788999999986

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.69  E-value=2.1e-17  Score=148.69  Aligned_cols=150  Identities=19%  Similarity=0.268  Sum_probs=102.7

Q ss_pred             ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhccc-------CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC
Q psy1694          67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRY-------HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG  139 (247)
Q Consensus        67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~-------~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~  139 (247)
                      .+.+.+++.|++.++||+.+++.+..++..+.....       ....+..++|+||||||||++|+++|+.+.       
T Consensus         4 ~~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~-------   76 (363)
T 3hws_A            4 PTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD-------   76 (363)
T ss_dssp             CCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT-------
T ss_pred             CCHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC-------
Confidence            346778889999999999999999998864322110       011344689999999999999999998852       


Q ss_pred             CCcceeeecccccCCCCChHHHHHHHHHHHHHHHHH-------hCCCeEEEEeCCCCCChh--------------hHHHH
Q psy1694         140 TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT-------ACDRAIFIFDEVDKFPKG--------------LLDVI  198 (247)
Q Consensus       140 ~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~-------~~~~~vlilDEiek~~~~--------------~~~~L  198 (247)
                       .+|+.++|+.+.  ..++++..   ..+.+.+.+.       .+.++++||||++++++.              +|+.|
T Consensus        77 -~~~~~~~~~~l~--~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~L  150 (363)
T 3hws_A           77 -VPFTMADATTLT--EAGYVGED---VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQAL  150 (363)
T ss_dssp             -CCEEEEEHHHHT--TCHHHHHH---HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHH
T ss_pred             -CCEEEechHHhc--cccccccc---HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHH
Confidence             489999988763  22233311   1223333333       335689999999999987              99999


Q ss_pred             HhhcccCccc---------------ccccCCceEEEEEeCC-ChHHHH
Q psy1694         199 IPFIDHHAVY---------------NQISFQNTIFLFLSNS-GGTEIM  230 (247)
Q Consensus       199 l~~Le~~~~~---------------~~~~~~~~ifI~tSN~-g~~~i~  230 (247)
                      +++|| +...               .-+...|.+||+++|. +.+.+.
T Consensus       151 l~~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i  197 (363)
T 3hws_A          151 LKLIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVI  197 (363)
T ss_dssp             HHHHH-CC----------------CCCCCTTSSEEEEEECCTTHHHHH
T ss_pred             HHHhc-CceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHH
Confidence            99999 3311               0125566777777776 544443

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=99.66  E-value=3.6e-16  Score=134.34  Aligned_cols=135  Identities=10%  Similarity=0.085  Sum_probs=91.9

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH------  152 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~------  152 (247)
                      .++|++.+++.+.+.+......+.      .++|+||||||||++|+++++.+.     +...+|+.++|+.+.      
T Consensus         7 ~~ig~~~~~~~~~~~~~~~~~~~~------~vll~G~~GtGKt~la~~i~~~~~-----~~~~~~~~v~~~~~~~~~~~~   75 (265)
T 2bjv_A            7 NLLGEANSFLEVLEQVSHLAPLDK------PVLIIGERGTGKELIASRLHYLSS-----RWQGPFISLNCAALNENLLDS   75 (265)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTSCS------CEEEECCTTSCHHHHHHHHHHTST-----TTTSCEEEEEGGGSCHHHHHH
T ss_pred             cceeCCHHHHHHHHHHHHHhCCCC------CEEEECCCCCcHHHHHHHHHHhcC-----ccCCCeEEEecCCCChhHHHH
Confidence            378999999999988887654443      689999999999999999987642     234689999987651      


Q ss_pred             ---CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccCCceEEEEEeCCC
Q psy1694         153 ---FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSG  225 (247)
Q Consensus       153 ---~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~~~~ifI~tSN~g  225 (247)
                         +...+   .|.+... ...+.+..+.++++||||+++++++.|+.|+++|+++.+...    ....+..+|++||..
T Consensus        76 ~l~g~~~~---~~~g~~~-~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~  151 (265)
T 2bjv_A           76 ELFGHEAG---AFTGAQK-RHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD  151 (265)
T ss_dssp             HHHCCC-------------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSC
T ss_pred             HhcCCccc---ccccccc-cccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcC
Confidence               11111   0111100 011334556779999999999999999999999998754321    112356799999987


Q ss_pred             hHH
Q psy1694         226 GTE  228 (247)
Q Consensus       226 ~~~  228 (247)
                      .+.
T Consensus       152 ~~~  154 (265)
T 2bjv_A          152 LPA  154 (265)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=99.66  E-value=8.9e-17  Score=126.43  Aligned_cols=115  Identities=10%  Similarity=0.135  Sum_probs=87.7

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++|++.+++.+.+.+......+.      .++|+||||||||++|+++++.  .      . +|+.++|+.+..     
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~~~~~------~vll~G~~GtGKt~lA~~i~~~--~------~-~~~~~~~~~~~~-----   64 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAAKRTS------PVFLTGEAGSPFETVARYFHKN--G------T-PWVSPARVEYLI-----   64 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTCSS------CEEEEEETTCCHHHHHGGGCCT--T------S-CEECCSSTTHHH-----
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCC------cEEEECCCCccHHHHHHHHHHh--C------C-CeEEechhhCCh-----
Confidence            488999999999999987765443      6899999999999999999543  2      1 788888876411     


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHH
Q psy1694         159 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE  228 (247)
Q Consensus       159 v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~  228 (247)
                               ....+.+..+.++++||||++.++++.|+.|+++++++.      -.+..+|++||...+.
T Consensus        65 ---------~~~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~------~~~~~iI~~tn~~~~~  119 (143)
T 3co5_A           65 ---------DMPMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE------RCRVRVIASCSYAAGS  119 (143)
T ss_dssp             ---------HCHHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT------TTTCEEEEEEEECTTT
T ss_pred             ---------HhhhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC------CCCEEEEEecCCCHHH
Confidence                     112345666778999999999999999999999999853      1456799999987543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.66  E-value=1.3e-15  Score=133.20  Aligned_cols=142  Identities=14%  Similarity=0.185  Sum_probs=102.3

Q ss_pred             ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc-------ccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC
Q psy1694          67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQN-------RYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG  139 (247)
Q Consensus        67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~-------~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~  139 (247)
                      .....+.+.+.+.++|++.+++.+.+.+......       -..+..+..++|+||||||||++|+++++.+..   .+.
T Consensus        20 ~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~---~~~   96 (309)
T 3syl_A           20 SGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR---LGY   96 (309)
T ss_dssp             TTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH---TTS
T ss_pred             ccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh---cCC
Confidence            3455677788878999999999998877643210       010223446899999999999999999999765   332


Q ss_pred             --CCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC---------ChhhHHHHHhhcccCccc
Q psy1694         140 --TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAVY  208 (247)
Q Consensus       140 --~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~---------~~~~~~~Ll~~Le~~~~~  208 (247)
                        ..+++.++++.+.....+.   ..    ..+.+.+..+.+++|||||++.+         +...++.|++.++++.  
T Consensus        97 ~~~~~~~~~~~~~l~~~~~g~---~~----~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~--  167 (309)
T 3syl_A           97 VRKGHLVSVTRDDLVGQYIGH---TA----PKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR--  167 (309)
T ss_dssp             SSSCCEEEECGGGTCCSSTTC---HH----HHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT--
T ss_pred             cCCCcEEEEcHHHhhhhcccc---cH----HHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC--
Confidence              4578888877764322222   11    22334455567789999999966         8899999999999865  


Q ss_pred             ccccCCceEEEEEeCCC
Q psy1694         209 NQISFQNTIFLFLSNSG  225 (247)
Q Consensus       209 ~~~~~~~~ifI~tSN~g  225 (247)
                           .+.++|+++|..
T Consensus       168 -----~~~~~i~~~~~~  179 (309)
T 3syl_A          168 -----DDLVVILAGYAD  179 (309)
T ss_dssp             -----TTCEEEEEECHH
T ss_pred             -----CCEEEEEeCChH
Confidence                 677899998865

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=99.63  E-value=6.9e-16  Score=139.33  Aligned_cols=148  Identities=20%  Similarity=0.237  Sum_probs=96.0

Q ss_pred             ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhccc-----------C-----------CCCCeEEEEeecCCChHHHHH
Q psy1694          67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRY-----------H-----------NTKALAISLHGLPGTGKNYVT  124 (247)
Q Consensus        67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~-----------~-----------~~kpl~lll~G~~GtGKt~~A  124 (247)
                      .+.+.+.+.|.+.++||+.+++.+..++..+.....           +           ...+..++|+||||||||++|
T Consensus        10 ~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la   89 (376)
T 1um8_A           10 PAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMA   89 (376)
T ss_dssp             CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHH
T ss_pred             CCHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHH
Confidence            456789999999999999999999988842211000           0           112346899999999999999


Q ss_pred             HHHHHHhhccccCCCCCcceeeecccccCCCCChHHHH-HHHHHHHHH---HHHHhCCCeEEEEeCCCCCChh-------
Q psy1694         125 DFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLY-RLQLTNWII---SNVTACDRAIFIFDEVDKFPKG-------  193 (247)
Q Consensus       125 ~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~-~~~l~~~~~---~~l~~~~~~vlilDEiek~~~~-------  193 (247)
                      +++|+.+.        .+|+.++++.+..  .++++.. .+.+...+.   +.+..+.++++||||+++++..       
T Consensus        90 ~~la~~l~--------~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~  159 (376)
T 1um8_A           90 QTLAKHLD--------IPIAISDATSLTE--AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSIT  159 (376)
T ss_dssp             HHHHHHTT--------CCEEEEEGGGCC----------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC----------
T ss_pred             HHHHHHhC--------CCEEEecchhhhh--cCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCcee
Confidence            99998852        3788888876531  2222210 111111111   1133456799999999999988       


Q ss_pred             -------hHHHHHhhcccCccc--c------------cccCCceEEEEEeCC
Q psy1694         194 -------LLDVIIPFIDHHAVY--N------------QISFQNTIFLFLSNS  224 (247)
Q Consensus       194 -------~~~~Ll~~Le~~~~~--~------------~~~~~~~ifI~tSN~  224 (247)
                             +++.|+++|+++.+.  .            -++..|.+||+++|.
T Consensus       160 ~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~  211 (376)
T 1um8_A          160 RDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAF  211 (376)
T ss_dssp             ----CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECC
T ss_pred             cccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCH
Confidence                   999999999976321  0            034567788888874

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.59  E-value=6.8e-16  Score=144.59  Aligned_cols=146  Identities=17%  Similarity=0.185  Sum_probs=97.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .++|++.+++.+.+.+...+..+.     ....|..++|+||||||||++|+++++.+        ..+|+.++|+.+..
T Consensus       205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~--------~~~fv~vn~~~l~~  276 (489)
T 3hu3_A          205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--------GAFFFLINGPEIMS  276 (489)
T ss_dssp             GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC--------SSEEEEEEHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh--------CCCEEEEEchHhhh
Confidence            589999999999988875422211     01234578999999999999999998873        24899999987753


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS  222 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS  222 (247)
                      ...   +...+.+.+.+.. ......++|||||+|.+.+           .+++.|+++|+...     ...+.++|++|
T Consensus       277 ~~~---g~~~~~~~~~f~~-A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-----~~~~v~vIaaT  347 (489)
T 3hu3_A          277 KLA---GESESNLRKAFEE-AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----QRAHVIVMAAT  347 (489)
T ss_dssp             SCT---THHHHHHHHHHHH-HHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-----TTSCEEEEEEE
T ss_pred             hhc---chhHHHHHHHHHH-HHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc-----cCCceEEEEec
Confidence            322   2233333344433 2334458999999966543           68899999999632     22568899999


Q ss_pred             CCChHHHHHHHHHHHHcCccccc
Q psy1694         223 NSGGTEIMNTFLELRKSGERYIT  245 (247)
Q Consensus       223 N~g~~~i~~~~~~~~~~g~~Re~  245 (247)
                      |.... +.   ....+.|++++.
T Consensus       348 n~~~~-Ld---~al~r~gRf~~~  366 (489)
T 3hu3_A          348 NRPNS-ID---PALRRFGRFDRE  366 (489)
T ss_dssp             SCGGG-BC---GGGGSTTSSCEE
T ss_pred             CCccc-cC---HHHhCCCcCceE
Confidence            97532 22   122334677654

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=99.58  E-value=5.6e-15  Score=128.61  Aligned_cols=148  Identities=19%  Similarity=0.240  Sum_probs=99.1

Q ss_pred             ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhccc------CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCC
Q psy1694          67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRY------HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT  140 (247)
Q Consensus        67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~------~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~  140 (247)
                      .+.+++.+.+.+.++||+.+++.+..++........      ....|..++|+||||||||++|+++++.+.        
T Consensus         4 ~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~--------   75 (310)
T 1ofh_A            4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN--------   75 (310)
T ss_dssp             CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT--------
T ss_pred             CCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC--------
Confidence            356788999999999999999999988876322110      012355789999999999999999999852        


Q ss_pred             CcceeeecccccCCCCChHHHH-HHHHHHHHH---HHHHh-CCCeEEEEeCCCCCChhh------------HHHHHhhcc
Q psy1694         141 SRFVHKFNSRIHFPNENHVSLY-RLQLTNWII---SNVTA-CDRAIFIFDEVDKFPKGL------------LDVIIPFID  203 (247)
Q Consensus       141 ~~~v~~~~~~l~~~~~~~v~~~-~~~l~~~~~---~~l~~-~~~~vlilDEiek~~~~~------------~~~Ll~~Le  203 (247)
                      .+++.++++.+..  .++++.- ...+.....   +.+.. .+.+++||||+|++++..            ++.|+++|+
T Consensus        76 ~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le  153 (310)
T 1ofh_A           76 APFIKVEATKFTE--VGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVE  153 (310)
T ss_dssp             CCEEEEEGGGGSS--CCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEcchhccc--CCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhc
Confidence            3788888877632  1222210 001111110   01112 135899999999998765            999999999


Q ss_pred             cCcccc---cccCCceEEEEEeCC
Q psy1694         204 HHAVYN---QISFQNTIFLFLSNS  224 (247)
Q Consensus       204 ~~~~~~---~~~~~~~ifI~tSN~  224 (247)
                      +.....   ..+..+.+||+++|.
T Consensus       154 ~~~~~~~~~~~~~~~~~~i~~~~~  177 (310)
T 1ofh_A          154 GSTVSTKHGMVKTDHILFIASGAF  177 (310)
T ss_dssp             CCEEEETTEEEECTTCEEEEEECC
T ss_pred             CCeEecccccccCCcEEEEEcCCc
Confidence            864321   124457888988753

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.57  E-value=2.3e-14  Score=125.63  Aligned_cols=121  Identities=10%  Similarity=0.089  Sum_probs=76.7

Q ss_pred             HHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHH-
Q psy1694          94 LKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIIS-  172 (247)
Q Consensus        94 l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~-  172 (247)
                      ++.++..+. .+.|..++|+||||||||++|+++|+.+-        .+|+.++++.+.....+.   ....+...+.. 
T Consensus        24 ~k~~l~~~~-~~~p~~lLl~GppGtGKT~la~aiA~~l~--------~~~i~v~~~~l~~~~~g~---~~~~i~~~f~~a   91 (293)
T 3t15_A           24 TKNFLKLPN-IKVPLILGIWGGKGQGKSFQCELVFRKMG--------INPIMMSAGELESGNAGE---PAKLIRQRYREA   91 (293)
T ss_dssp             HHTTSCCTT-CCCCSEEEEEECTTSCHHHHHHHHHHHHT--------CCCEEEEHHHHHCC---H---HHHHHHHHHHHH
T ss_pred             HHHHHhcCC-CCCCeEEEEECCCCCCHHHHHHHHHHHhC--------CCEEEEeHHHhhhccCch---hHHHHHHHHHHH
Confidence            344444343 56778899999999999999999999863        389999988764332221   12222222211 


Q ss_pred             --HHHhCCCeEEEEeCCCCCCh-------------hhHHHHHhhcccCccc------ccccCCceEEEEEeCCCh
Q psy1694         173 --NVTACDRAIFIFDEVDKFPK-------------GLLDVIIPFIDHHAVY------NQISFQNTIFLFLSNSGG  226 (247)
Q Consensus       173 --~l~~~~~~vlilDEiek~~~-------------~~~~~Ll~~Le~~~~~------~~~~~~~~ifI~tSN~g~  226 (247)
                        ..+....+||||||+|++.+             .+++.|+.+|+.....      ...+..+.++|+|||...
T Consensus        92 ~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~  166 (293)
T 3t15_A           92 AEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS  166 (293)
T ss_dssp             HHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC
T ss_pred             HHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc
Confidence              12344679999999998865             3669999999854321      122557899999999753

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.56  E-value=3.8e-14  Score=125.56  Aligned_cols=124  Identities=15%  Similarity=0.185  Sum_probs=91.3

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++|++.+++.+...+........   .+..++|+||||||||++|+.+++.+.        .+|+.++++.+.     .
T Consensus        30 ~iiG~~~~~~~l~~~l~~~~~~~~---~~~~vll~G~~GtGKT~la~~ia~~~~--------~~~~~~~~~~~~-----~   93 (338)
T 3pfi_A           30 GYIGQESIKKNLNVFIAAAKKRNE---CLDHILFSGPAGLGKTTLANIISYEMS--------ANIKTTAAPMIE-----K   93 (338)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHHTTS---CCCCEEEECSTTSSHHHHHHHHHHHTT--------CCEEEEEGGGCC-----S
T ss_pred             HhCChHHHHHHHHHHHHHHHhcCC---CCCeEEEECcCCCCHHHHHHHHHHHhC--------CCeEEecchhcc-----c
Confidence            499999999999988876543222   233589999999999999999988742        378888886652     1


Q ss_pred             HHHHHHHHHHHHHHHHH-hCCCeEEEEeCCCCCChhhHHHHHhhcccCccc-----------ccccCCceEEEEEeCCCh
Q psy1694         159 VSLYRLQLTNWIISNVT-ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY-----------NQISFQNTIFLFLSNSGG  226 (247)
Q Consensus       159 v~~~~~~l~~~~~~~l~-~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~-----------~~~~~~~~ifI~tSN~g~  226 (247)
                      .+        .+.+.+. .+.++++||||++.+++..++.|+++|+++...           ...+..+.++|++||...
T Consensus        94 ~~--------~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~  165 (338)
T 3pfi_A           94 SG--------DLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAG  165 (338)
T ss_dssp             HH--------HHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGG
T ss_pred             hh--------HHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCcc
Confidence            12        1222232 356799999999999999999999999987632           123444688999999743

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.50  E-value=3.6e-13  Score=122.77  Aligned_cols=145  Identities=14%  Similarity=0.160  Sum_probs=95.2

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .+.|.+.+++.+.+.+.--+..+.     ....|..+||+||||||||++|+++|..+.        .+|+.+..+++..
T Consensus       149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~--------~~f~~v~~s~l~s  220 (405)
T 4b4t_J          149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD--------CKFIRVSGAELVQ  220 (405)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT--------CEEEEEEGGGGSC
T ss_pred             HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC--------CCceEEEhHHhhc
Confidence            488999999999988864222211     123456899999999999999999999853        3899999888743


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------h---hHHHHHhhcccCcccccccCCceEEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------G---LLDVIIPFIDHHAVYNQISFQNTIFL  219 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~---~~~~Ll~~Le~~~~~~~~~~~~~ifI  219 (247)
                      .   +++.-...+...+ ........+++||||+|.+.+           .   ....|+..||.-.     ...+.++|
T Consensus       221 k---~vGese~~vr~lF-~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----~~~~V~vI  291 (405)
T 4b4t_J          221 K---YIGEGSRMVRELF-VMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE-----TSKNIKII  291 (405)
T ss_dssp             S---STTHHHHHHHHHH-HHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT-----CCCCEEEE
T ss_pred             c---ccchHHHHHHHHH-HHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC-----CCCCeEEE
Confidence            3   3333333334333 333445569999999998843           1   3455566665421     23577899


Q ss_pred             EEeCCChHHHHHHHHHHHHcCcccc
Q psy1694         220 FLSNSGGTEIMNTFLELRKSGERYI  244 (247)
Q Consensus       220 ~tSN~g~~~i~~~~~~~~~~g~~Re  244 (247)
                      +|||.... |..   .+++.||+..
T Consensus       292 aATNrpd~-LDp---AllRpGRfD~  312 (405)
T 4b4t_J          292 MATNRLDI-LDP---ALLRPGRIDR  312 (405)
T ss_dssp             EEESCSSS-SCH---HHHSTTSSCC
T ss_pred             eccCChhh-CCH---hHcCCCcCce
Confidence            99998533 322   3345666643

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.48  E-value=2.9e-13  Score=118.82  Aligned_cols=123  Identities=13%  Similarity=0.146  Sum_probs=87.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++|++.+++.+...+........   .+..++|+||||||||++|+.+++.+.        .+++.++++.+..     
T Consensus        13 ~~ig~~~~~~~l~~~l~~~~~~~~---~~~~vll~G~~GtGKT~la~~i~~~~~--------~~~~~~~~~~~~~-----   76 (324)
T 1hqc_A           13 EYIGQERLKQKLRVYLEAAKARKE---PLEHLLLFGPPGLGKTTLAHVIAHELG--------VNLRVTSGPAIEK-----   76 (324)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHCS---CCCCCEEECCTTCCCHHHHHHHHHHHT--------CCEEEECTTTCCS-----
T ss_pred             HhhCHHHHHHHHHHHHHHHHccCC---CCCcEEEECCCCCCHHHHHHHHHHHhC--------CCEEEEeccccCC-----
Confidence            489999999999888876543221   233579999999999999999988742        3677777655411     


Q ss_pred             HHHHHHHHHHHHHHHHHh--CCCeEEEEeCCCCCChhhHHHHHhhcccCcccc--c---------ccCCceEEEEEeCCC
Q psy1694         159 VSLYRLQLTNWIISNVTA--CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--Q---------ISFQNTIFLFLSNSG  225 (247)
Q Consensus       159 v~~~~~~l~~~~~~~l~~--~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~--~---------~~~~~~ifI~tSN~g  225 (247)
                      .        ..+.+.+..  ..++++||||++.+++..++.|+++++++....  +         .+..+.++|++||..
T Consensus        77 ~--------~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~  148 (324)
T 1hqc_A           77 P--------GDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRP  148 (324)
T ss_dssp             H--------HHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCC
T ss_pred             h--------HHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCc
Confidence            1        122233444  567999999999999999999999999864210  0         122357788888854

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.48  E-value=1.3e-13  Score=130.74  Aligned_cols=148  Identities=20%  Similarity=0.288  Sum_probs=90.7

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec
Q psy1694          69 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN  148 (247)
Q Consensus        69 ~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~  148 (247)
                      ....++.|.+.++|++.+...+.+.+.-......  .++..++|+||||||||++|+++|..+..        +++.+++
T Consensus        72 ~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~--~~g~~vll~Gp~GtGKTtlar~ia~~l~~--------~~~~i~~  141 (543)
T 3m6a_A           72 LKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKS--LKGPILCLAGPPGVGKTSLAKSIAKSLGR--------KFVRISL  141 (543)
T ss_dssp             TTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSS--CCSCEEEEESSSSSSHHHHHHHHHHHHTC--------EEEEECC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccc--CCCCEEEEECCCCCCHHHHHHHHHHhcCC--------CeEEEEe
Confidence            3445566778899999999888766543222221  13447899999999999999999998633        6777776


Q ss_pred             ccccCCC--CChHHHHHHHHHHHHHHHHHhC--CCeEEEEeCCCCCChh----hHHHHHhhcccCccc--------cccc
Q psy1694         149 SRIHFPN--ENHVSLYRLQLTNWIISNVTAC--DRAIFIFDEVDKFPKG----LLDVIIPFIDHHAVY--------NQIS  212 (247)
Q Consensus       149 ~~l~~~~--~~~v~~~~~~l~~~~~~~l~~~--~~~vlilDEiek~~~~----~~~~Ll~~Le~~~~~--------~~~~  212 (247)
                      +......  .+....|.+...+.+...+..+  ..+++||||+++++++    .++.|+++|++.+..        ..++
T Consensus       142 ~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~  221 (543)
T 3m6a_A          142 GGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFD  221 (543)
T ss_dssp             CC--------------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCB
T ss_pred             cccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeec
Confidence            5432111  0111123333333343444554  5589999999999987    569999999875422        1236


Q ss_pred             CCceEEEEEeCCCh
Q psy1694         213 FQNTIFLFLSNSGG  226 (247)
Q Consensus       213 ~~~~ifI~tSN~g~  226 (247)
                      ..+++||+|||...
T Consensus       222 ~~~v~iI~ttN~~~  235 (543)
T 3m6a_A          222 LSKVLFIATANNLA  235 (543)
T ss_dssp             CSSCEEEEECSSTT
T ss_pred             ccceEEEeccCccc
Confidence            68899999999754

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.47  E-value=5.1e-13  Score=118.26  Aligned_cols=131  Identities=18%  Similarity=0.163  Sum_probs=89.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      .++|++.+++.+.+.+......+.    ....|..++|+||||||||++|+++|+.+.        .+|+.++++++...
T Consensus        19 di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--------~~~~~v~~~~l~~~   90 (322)
T 3eie_A           19 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--------STFFSVSSSDLVSK   90 (322)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT--------CEEEEEEHHHHHTT
T ss_pred             HhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC--------CCEEEEchHHHhhc
Confidence            499999999999988864332221    012345799999999999999999998853        37899988776433


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694         155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  223 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN  223 (247)
                      .   ++.....+...+ ........++|||||+|.+.+           .+++.++..++...    ....+.++|++||
T Consensus        91 ~---~g~~~~~~~~~f-~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----~~~~~v~vi~atn  162 (322)
T 3eie_A           91 W---MGESEKLVKQLF-AMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----NDSQGVLVLGATN  162 (322)
T ss_dssp             T---GGGHHHHHHHHH-HHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG----TSCCCEEEEEEES
T ss_pred             c---cchHHHHHHHHH-HHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc----ccCCceEEEEecC
Confidence            2   222233233333 334455668999999999865           34677777776421    1225678888998


Q ss_pred             CC
Q psy1694         224 SG  225 (247)
Q Consensus       224 ~g  225 (247)
                      ..
T Consensus       163 ~~  164 (322)
T 3eie_A          163 IP  164 (322)
T ss_dssp             CG
T ss_pred             Ch
Confidence            74

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.47  E-value=3.8e-13  Score=116.27  Aligned_cols=133  Identities=14%  Similarity=0.169  Sum_probs=88.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .++|++.+++.+.+.+......+.     ....|..++|+||||||||++|+++|+.+.        .+++.++++.+..
T Consensus        18 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~--------~~~~~v~~~~~~~   89 (285)
T 3h4m_A           18 DIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN--------ATFIRVVGSELVK   89 (285)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT--------CEEEEEEGGGGCC
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--------CCEEEEehHHHHH
Confidence            489999999999888765432211     012445789999999999999999998843        3788888877654


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------ChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  222 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~-----------~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS  222 (247)
                      ...+.   ....+...+ ........++|||||++.+           +...+..+..+++.....  ....+.++|+||
T Consensus        90 ~~~~~---~~~~~~~~~-~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--~~~~~~~vI~tt  163 (285)
T 3h4m_A           90 KFIGE---GASLVKDIF-KLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF--DARGDVKIIGAT  163 (285)
T ss_dssp             CSTTH---HHHHHHHHH-HHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT--CSSSSEEEEEEC
T ss_pred             hccch---HHHHHHHHH-HHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC--CCCCCEEEEEeC
Confidence            43332   222223333 3344556689999999987           456677777776642100  012467889998


Q ss_pred             CCC
Q psy1694         223 NSG  225 (247)
Q Consensus       223 N~g  225 (247)
                      |..
T Consensus       164 n~~  166 (285)
T 3h4m_A          164 NRP  166 (285)
T ss_dssp             SCG
T ss_pred             CCc
Confidence            865

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.47  E-value=1.1e-13  Score=119.24  Aligned_cols=135  Identities=9%  Similarity=0.129  Sum_probs=84.0

Q ss_pred             HHHhhcCChHHHHHHHHHH---HHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc
Q psy1694          75 QLKQHVHGQELAISHICGA---LKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI  151 (247)
Q Consensus        75 ~L~~~l~Gq~~a~~~l~~~---l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l  151 (247)
                      .+...++|++.+++.+...   +...+.... ...+..++|+||||||||++|+++|+.+.        .+|+.++++..
T Consensus        30 ~~~~~~i~~~~~~~~i~~~~~~l~~~l~~~~-~~~~~~vLl~G~~GtGKT~la~~ia~~~~--------~~~~~i~~~~~  100 (272)
T 1d2n_A           30 YIMNGIIKWGDPVTRVLDDGELLVQQTKNSD-RTPLVSVLLEGPPHSGKTALAAKIAEESN--------FPFIKICSPDK  100 (272)
T ss_dssp             TCTTCCCCCSHHHHHHHHHHHHHHHHHHHCS-SCSEEEEEEECSTTSSHHHHHHHHHHHHT--------CSEEEEECGGG
T ss_pred             HHhcCCCCccHHHHHHHHHHHHHHHHHhccC-CCCCeEEEEECCCCCcHHHHHHHHHHHhC--------CCEEEEeCHHH
Confidence            3444689999998888775   333333222 23455799999999999999999998842        37888887653


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC----------ChhhHHHHHhhcccCcccccccCCceEEEEE
Q psy1694         152 HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF----------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFL  221 (247)
Q Consensus       152 ~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~----------~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~t  221 (247)
                      .....  .......+...+ ........++|||||+|.+          ...+++.|...++...    ..-.+.++|+|
T Consensus       101 ~~g~~--~~~~~~~~~~~~-~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~----~~~~~~~ii~t  173 (272)
T 1d2n_A          101 MIGFS--ETAKCQAMKKIF-DDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP----PQGRKLLIIGT  173 (272)
T ss_dssp             CTTCC--HHHHHHHHHHHH-HHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC----STTCEEEEEEE
T ss_pred             hcCCc--hHHHHHHHHHHH-HHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc----CCCCCEEEEEe
Confidence            22221  111112222223 2223456799999999887          3455666666665421    11246678888


Q ss_pred             eCCC
Q psy1694         222 SNSG  225 (247)
Q Consensus       222 SN~g  225 (247)
                      ||..
T Consensus       174 tn~~  177 (272)
T 1d2n_A          174 TSRK  177 (272)
T ss_dssp             ESCH
T ss_pred             cCCh
Confidence            8874

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.45  E-value=1.4e-12  Score=120.19  Aligned_cols=130  Identities=18%  Similarity=0.202  Sum_probs=88.3

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .|.|.+.+++.+.+.+.-.+..+.     ...-|..+||+||||||||++|+++|..+.        .+|+.++++++..
T Consensus       182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~--------~~~~~v~~s~l~s  253 (437)
T 4b4t_L          182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG--------ANFIFSPASGIVD  253 (437)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--------CEEEEEEGGGTCC
T ss_pred             HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--------CCEEEEehhhhcc
Confidence            488999999999988865333221     123456899999999999999999999853        3899998887744


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCceEEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFL  219 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI  219 (247)
                      ...   +.-...+...+ ........+||||||+|.+..              .....||..|+...     ...+.++|
T Consensus       254 k~~---Gese~~ir~~F-~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----~~~~vivI  324 (437)
T 4b4t_L          254 KYI---GESARIIREMF-AYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD-----NLGQTKII  324 (437)
T ss_dssp             SSS---SHHHHHHHHHH-HHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS-----CTTSSEEE
T ss_pred             ccc---hHHHHHHHHHH-HHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc-----CCCCeEEE
Confidence            332   32222233333 333455679999999998732              13455666666422     23567999


Q ss_pred             EEeCCC
Q psy1694         220 FLSNSG  225 (247)
Q Consensus       220 ~tSN~g  225 (247)
                      +|||..
T Consensus       325 ~ATNrp  330 (437)
T 4b4t_L          325 MATNRP  330 (437)
T ss_dssp             EEESST
T ss_pred             EecCCc
Confidence            999974

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.45  E-value=1.2e-12  Score=111.34  Aligned_cols=133  Identities=14%  Similarity=0.103  Sum_probs=78.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .++|++.+++.+.+.+.. ...+.     ....|..++|+||||||||++|+++|+.+.        .+++.++++.+..
T Consensus         7 ~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~--------~~~~~~~~~~~~~   77 (262)
T 2qz4_A            7 DVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ--------VPFLAMAGAEFVE   77 (262)
T ss_dssp             SSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT--------CCEEEEETTTTSS
T ss_pred             HhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC--------CCEEEechHHHHh
Confidence            489999999988777654 22221     013455789999999999999999999853        3788888877643


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC------------hhhHHHHHhhcccCcccccccCCceEEEEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP------------KGLLDVIIPFIDHHAVYNQISFQNTIFLFL  221 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~------------~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~t  221 (247)
                      ...+.   ....+...+ ........++|||||+|.+.            ...+..+..++++-.  ......+.++|+|
T Consensus        78 ~~~~~---~~~~~~~~~-~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~~~~~vi~~  151 (262)
T 2qz4_A           78 VIGGL---GAARVRSLF-KEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMD--GMGTTDHVIVLAS  151 (262)
T ss_dssp             SSTTH---HHHHHHHHH-HHHHHTCSEEEEEECC-------------------CHHHHHHHHHHH--TCCTTCCEEEEEE
T ss_pred             hccCh---hHHHHHHHH-HHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhh--CcCCCCCEEEEec
Confidence            22221   222223333 22334456899999999983            333344444443210  0011257789999


Q ss_pred             eCCCh
Q psy1694         222 SNSGG  226 (247)
Q Consensus       222 SN~g~  226 (247)
                      ||...
T Consensus       152 tn~~~  156 (262)
T 2qz4_A          152 TNRAD  156 (262)
T ss_dssp             ESCGG
T ss_pred             CCChh
Confidence            98753

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.44  E-value=1.3e-12  Score=113.61  Aligned_cols=133  Identities=15%  Similarity=0.140  Sum_probs=87.8

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      .++|++.+++.+.+.+......+.    -...+..++|+||||||||++|+++++.+.        .+|+.++++.+...
T Consensus        22 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~--------~~~~~i~~~~l~~~   93 (297)
T 3b9p_A           22 DIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS--------ATFLNISAASLTSK   93 (297)
T ss_dssp             GSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT--------CEEEEEESTTTSSS
T ss_pred             HhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC--------CCeEEeeHHHHhhc
Confidence            489999999999888765322111    011345789999999999999999988742        37888988877554


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC-----------hhhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694         155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  223 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~-----------~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN  223 (247)
                      ..+...   .... .+.........+++||||++.+.           ...++.++..++.....  ....+.++|++||
T Consensus        94 ~~~~~~---~~~~-~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~~v~vi~~tn  167 (297)
T 3b9p_A           94 YVGDGE---KLVR-ALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN--PDGDRIVVLAATN  167 (297)
T ss_dssp             SCSCHH---HHHH-HHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--------CEEEEEEES
T ss_pred             ccchHH---HHHH-HHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc--CCCCcEEEEeecC
Confidence            443322   1122 22234445667999999998884           34566778777764311  1124578899998


Q ss_pred             CC
Q psy1694         224 SG  225 (247)
Q Consensus       224 ~g  225 (247)
                      ..
T Consensus       168 ~~  169 (297)
T 3b9p_A          168 RP  169 (297)
T ss_dssp             CG
T ss_pred             Ch
Confidence            75

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.44  E-value=8.8e-13  Score=108.09  Aligned_cols=120  Identities=18%  Similarity=0.247  Sum_probs=85.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++|++.+++.+.+.+...        ++..++|+||+|||||++|+.+++.+..   .+...+++.++++...     .
T Consensus        18 ~~~g~~~~~~~l~~~l~~~--------~~~~~ll~G~~G~GKT~l~~~l~~~~~~---~~~~~~~~~~~~~~~~-----~   81 (226)
T 2chg_A           18 EVVGQDEVIQRLKGYVERK--------NIPHLLFSGPPGTGKTATAIALARDLFG---ENWRDNFIEMNASDER-----G   81 (226)
T ss_dssp             GCCSCHHHHHHHHHHHHTT--------CCCCEEEECSTTSSHHHHHHHHHHHHHG---GGGGGGEEEEETTCTT-----C
T ss_pred             HHcCcHHHHHHHHHHHhCC--------CCCeEEEECCCCCCHHHHHHHHHHHHhc---cccccceEEecccccc-----C
Confidence            4899999988887776532        1113799999999999999999998765   4444567777664321     1


Q ss_pred             HHHHHHHHHHHHHHHHH-----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         159 VSLYRLQLTNWIISNVT-----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       159 v~~~~~~l~~~~~~~l~-----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                      ....    ...+.....     .....+++|||++.+++..++.|++++++..       .++.+|++||..
T Consensus        82 ~~~~----~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-------~~~~~i~~~~~~  142 (226)
T 2chg_A           82 IDVV----RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYS-------KSCRFILSCNYV  142 (226)
T ss_dssp             HHHH----HHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCG
T ss_pred             hHHH----HHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcC-------CCCeEEEEeCCh
Confidence            1111    222222222     2456899999999999999999999999854       567888888865

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.44  E-value=1.7e-12  Score=119.07  Aligned_cols=131  Identities=15%  Similarity=0.159  Sum_probs=87.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .|-|.+.+++.|.+.+.-.+..+.     ...-|..+||+||||||||++|+++|..+.        .+|+.++.+++..
T Consensus       183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~--------~~fi~v~~s~l~s  254 (437)
T 4b4t_I          183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS--------ATFLRIVGSELIQ  254 (437)
T ss_dssp             GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT--------CEEEEEESGGGCC
T ss_pred             ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC--------CCEEEEEHHHhhh
Confidence            488999999999998875333221     123456899999999999999999999853        3899998888754


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hh---HHHHHhhcccCcccccccCCceEEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GL---LDVIIPFIDHHAVYNQISFQNTIFL  219 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~---~~~Ll~~Le~~~~~~~~~~~~~ifI  219 (247)
                      ..   ++.....+...+ ........+|+||||+|.+..           ..   ...|+..++...     ...+.++|
T Consensus       255 k~---vGesek~ir~lF-~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~-----~~~~ViVI  325 (437)
T 4b4t_I          255 KY---LGDGPRLCRQIF-KVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD-----DRGDVKVI  325 (437)
T ss_dssp             SS---SSHHHHHHHHHH-HHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC-----CSSSEEEE
T ss_pred             cc---CchHHHHHHHHH-HHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC-----CCCCEEEE
Confidence            33   332333333333 233445569999999998732           22   334444444311     23578999


Q ss_pred             EEeCCCh
Q psy1694         220 FLSNSGG  226 (247)
Q Consensus       220 ~tSN~g~  226 (247)
                      +|||...
T Consensus       326 aATNrpd  332 (437)
T 4b4t_I          326 MATNKIE  332 (437)
T ss_dssp             EEESCST
T ss_pred             EeCCChh
Confidence            9999743

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.42  E-value=1e-12  Score=120.92  Aligned_cols=145  Identities=18%  Similarity=0.178  Sum_probs=95.3

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .+.|.+.+++.+.+.+...+..+.     ....|..+||+||||||||++|+++|..+.        .+|+.++++++..
T Consensus       173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~--------~~~~~v~~~~l~~  244 (428)
T 4b4t_K          173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK--------AAFIRVNGSEFVH  244 (428)
T ss_dssp             GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT--------CEEEEEEGGGTCC
T ss_pred             HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC--------CCeEEEecchhhc
Confidence            489999999999988875433221     123466899999999999999999999853        3899999888754


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCceEEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFL  219 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI  219 (247)
                      ...   +.-...+...+. .......+++||||+|.+..              .+.+.|+..|+.-.     ...+.++|
T Consensus       245 ~~~---Ge~e~~ir~lF~-~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~-----~~~~v~vI  315 (428)
T 4b4t_K          245 KYL---GEGPRMVRDVFR-LARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD-----QSTNVKVI  315 (428)
T ss_dssp             SSC---SHHHHHHHHHHH-HHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC-----SSCSEEEE
T ss_pred             ccc---chhHHHHHHHHH-HHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC-----CCCCEEEE
Confidence            333   323333333332 33445569999999975421              24566666666421     23578999


Q ss_pred             EEeCCChHHHHHHHHHHHHcCcccc
Q psy1694         220 FLSNSGGTEIMNTFLELRKSGERYI  244 (247)
Q Consensus       220 ~tSN~g~~~i~~~~~~~~~~g~~Re  244 (247)
                      +|||.... |..   .+++.||+..
T Consensus       316 ~aTN~~~~-LD~---AllRpGRfd~  336 (428)
T 4b4t_K          316 MATNRADT-LDP---ALLRPGRLDR  336 (428)
T ss_dssp             EEESCSSS-CCH---HHHSSSSEEE
T ss_pred             EecCChhh-cCh---hhhcCCcceE
Confidence            99997532 332   2345666643

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.42  E-value=2.6e-12  Score=114.02  Aligned_cols=132  Identities=19%  Similarity=0.164  Sum_probs=87.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      .+.|++.+++.+.+.+...+..+.    ....|..++|+||||||||++|+++|+.+..       .+|+.++++++...
T Consensus        13 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-------~~~~~i~~~~l~~~   85 (322)
T 1xwi_A           13 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-------STFFSISSSDLVSK   85 (322)
T ss_dssp             GSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-------CEEEEEECCSSCCS
T ss_pred             HhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-------CcEEEEEhHHHHhh
Confidence            489999999999988864333221    0123457999999999999999999988522       47888888776543


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694         155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  223 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN  223 (247)
                      ..+..   ...+...+ ........++|||||+|.+.+           .+++.++..++.-.    .+..+.++|++||
T Consensus        86 ~~g~~---~~~~~~lf-~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~----~~~~~v~vI~atn  157 (322)
T 1xwi_A           86 WLGES---EKLVKNLF-QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG----VDNDGILVLGATN  157 (322)
T ss_dssp             SCCSC---HHHHHHHH-HHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS----SCCTTEEEEEEES
T ss_pred             hhhHH---HHHHHHHH-HHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc----ccCCCEEEEEecC
Confidence            32221   11222222 334456678999999998832           34566676666421    1235788999998


Q ss_pred             CC
Q psy1694         224 SG  225 (247)
Q Consensus       224 ~g  225 (247)
                      ..
T Consensus       158 ~~  159 (322)
T 1xwi_A          158 IP  159 (322)
T ss_dssp             CT
T ss_pred             Cc
Confidence            76

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.42  E-value=6.6e-13  Score=120.47  Aligned_cols=132  Identities=14%  Similarity=0.142  Sum_probs=85.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      .++|++.+++.+.+.+......+.    -...+..++|+||||||||++|+++|+.+.        .+|+.++++.+...
T Consensus       116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~--------~~~~~v~~~~l~~~  187 (389)
T 3vfd_A          116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN--------ATFFNISAASLTSK  187 (389)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT--------CEEEEECSCCC---
T ss_pred             HhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc--------CcEEEeeHHHhhcc
Confidence            489999999999988864332111    011245789999999999999999988742        48999998877543


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------ChhhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694         155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  223 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~-----------~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN  223 (247)
                      ..+.   ....+...+ ........++|||||+|.+           ...+++.|+..++....   ..-.+.++|++||
T Consensus       188 ~~g~---~~~~~~~~~-~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~---~~~~~v~vI~atn  260 (389)
T 3vfd_A          188 YVGE---GEKLVRALF-AVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS---AGDDRVLVMGATN  260 (389)
T ss_dssp             -------CHHHHHHHH-HHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--------CEEEEEEES
T ss_pred             ccch---HHHHHHHHH-HHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc---cCCCCEEEEEecC
Confidence            2221   222222222 3344556689999999888           44567788888774211   1124678999998


Q ss_pred             CC
Q psy1694         224 SG  225 (247)
Q Consensus       224 ~g  225 (247)
                      ..
T Consensus       261 ~~  262 (389)
T 3vfd_A          261 RP  262 (389)
T ss_dssp             CG
T ss_pred             Cc
Confidence            73

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.42  E-value=2e-12  Score=119.45  Aligned_cols=146  Identities=18%  Similarity=0.183  Sum_probs=94.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .|.|.+.+++.|.+.+.-.+..+.     .-..|..+||+||||||||++|+++|..+.        .+|+.+.++++..
T Consensus       210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~--------~~fi~vs~s~L~s  281 (467)
T 4b4t_H          210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD--------ATFIRVIGSELVQ  281 (467)
T ss_dssp             SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT--------CEEEEEEGGGGCC
T ss_pred             HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC--------CCeEEEEhHHhhc
Confidence            488999999999888754322211     023566899999999999999999999853        3899999888754


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------h---hHHHHHhhcccCcccccccCCceEEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------G---LLDVIIPFIDHHAVYNQISFQNTIFL  219 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~---~~~~Ll~~Le~~~~~~~~~~~~~ifI  219 (247)
                      ..   ++.....+...+ ........+++||||+|.+..           .   .+..++..|+...     ...+.++|
T Consensus       282 k~---vGesek~ir~lF-~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----~~~~ViVI  352 (467)
T 4b4t_H          282 KY---VGEGARMVRELF-EMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD-----PRGNIKVM  352 (467)
T ss_dssp             CS---SSHHHHHHHHHH-HHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC-----CTTTEEEE
T ss_pred             cc---CCHHHHHHHHHH-HHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC-----CCCcEEEE
Confidence            33   332333333333 233445569999999998742           1   2344455554321     23578899


Q ss_pred             EEeCCChHHHHHHHHHHHHcCccccc
Q psy1694         220 FLSNSGGTEIMNTFLELRKSGERYIT  245 (247)
Q Consensus       220 ~tSN~g~~~i~~~~~~~~~~g~~Re~  245 (247)
                      +|||.... |..   .+++.||+...
T Consensus       353 aATNrpd~-LDp---ALlRpGRFD~~  374 (467)
T 4b4t_H          353 FATNRPNT-LDP---ALLRPGRIDRK  374 (467)
T ss_dssp             EECSCTTS-BCH---HHHSTTTCCEE
T ss_pred             eCCCCccc-CCh---hhhccccccEE
Confidence            99997432 332   23556766543

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.41  E-value=1.3e-12  Score=117.44  Aligned_cols=132  Identities=17%  Similarity=0.146  Sum_probs=88.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      .++|++.+++.+.+.+...+..+.    ....|..++|+||||||||++|+++|+.+.        .+|+.++++.+...
T Consensus        85 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--------~~~~~i~~~~l~~~  156 (357)
T 3d8b_A           85 DIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG--------ATFFSISASSLTSK  156 (357)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT--------CEEEEEEGGGGCCS
T ss_pred             HhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC--------CeEEEEehHHhhcc
Confidence            489999999999988865332211    012455799999999999999999988742        47899998887543


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694         155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  223 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN  223 (247)
                      ..+.   ....+...+ ........++|||||+|.+..           .+++.++..++....   ....+.++|++||
T Consensus       157 ~~g~---~~~~~~~~~-~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~---~~~~~v~vI~atn  229 (357)
T 3d8b_A          157 WVGE---GEKMVRALF-AVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATT---SSEDRILVVGATN  229 (357)
T ss_dssp             STTH---HHHHHHHHH-HHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-------CCCCEEEEEEES
T ss_pred             ccch---HHHHHHHHH-HHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccc---cCCCCEEEEEecC
Confidence            3222   222222222 334456679999999988743           456778888775321   1124678899998


Q ss_pred             CC
Q psy1694         224 SG  225 (247)
Q Consensus       224 ~g  225 (247)
                      ..
T Consensus       230 ~~  231 (357)
T 3d8b_A          230 RP  231 (357)
T ss_dssp             CG
T ss_pred             Ch
Confidence            74

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.41  E-value=3.7e-12  Score=113.80  Aligned_cols=119  Identities=17%  Similarity=0.132  Sum_probs=74.3

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++||+.+++.+............   .+..++|+||||||||++|+++++.+..      ..+|+.+++..+.......
T Consensus        45 ~ivG~~~~~~~l~~l~~~~~~~~~---~~~~vLl~GppGtGKT~la~~la~~l~~------~~~~~~~~~~~~~~~~~~~  115 (368)
T 3uk6_A           45 GMVGQLAARRAAGVVLEMIREGKI---AGRAVLIAGQPGTGKTAIAMGMAQALGP------DTPFTAIAGSEIFSLEMSK  115 (368)
T ss_dssp             TEESCHHHHHHHHHHHHHHHTTCC---TTCEEEEEESTTSSHHHHHHHHHHHHCS------SCCEEEEEGGGGSCSSSCH
T ss_pred             hccChHHHHHHHHHHHHHHHcCCC---CCCEEEEECCCCCCHHHHHHHHHHHhcc------cCCcccccchhhhhcccch
Confidence            489999998876554443322221   2347899999999999999999998643      3466666654422111100


Q ss_pred             --------------------------------------------------HHHHHHHHHHHHHHHHHhCC----CeEEEE
Q psy1694         159 --------------------------------------------------VSLYRLQLTNWIISNVTACD----RAIFIF  184 (247)
Q Consensus       159 --------------------------------------------------v~~~~~~l~~~~~~~l~~~~----~~vlil  184 (247)
                                                                        ....+..+............    .+++||
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I  195 (368)
T 3uk6_A          116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI  195 (368)
T ss_dssp             HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred             hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence                                                              11111111111111111111    269999


Q ss_pred             eCCCCCChhhHHHHHhhcccCc
Q psy1694         185 DEVDKFPKGLLDVIIPFIDHHA  206 (247)
Q Consensus       185 DEiek~~~~~~~~Ll~~Le~~~  206 (247)
                      ||++.+++..++.|++.+++..
T Consensus       196 DEi~~l~~~~~~~L~~~le~~~  217 (368)
T 3uk6_A          196 DEVHMLDIESFSFLNRALESDM  217 (368)
T ss_dssp             ESGGGSBHHHHHHHHHHTTCTT
T ss_pred             hhccccChHHHHHHHHHhhCcC
Confidence            9999999999999999998864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.41  E-value=1.7e-12  Score=103.97  Aligned_cols=126  Identities=13%  Similarity=0.131  Sum_probs=82.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCC-----CCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-----GTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g-----~~~~~v~~~~~~l~~  153 (247)
                      .++|++..++.+.+.+..        ..+..++|+||+|||||++|+.+++.+..   ..     ...+++.+++..+..
T Consensus        23 ~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~   91 (195)
T 1jbk_A           23 PVIGRDEEIRRTIQVLQR--------RTKNNPVLIGEPGVGKTAIVEGLAQRIIN---GEVPEGLKGRRVLALDMGALVA   91 (195)
T ss_dssp             CCCSCHHHHHHHHHHHTS--------SSSCEEEEECCTTSCHHHHHHHHHHHHHH---TCSCGGGTTCEEEEECHHHHHT
T ss_pred             ccccchHHHHHHHHHHhc--------CCCCceEEECCCCCCHHHHHHHHHHHHHh---CCCchhhcCCcEEEeeHHHHhc
Confidence            589999988888776643        12336799999999999999999998754   11     123556666655432


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC--------hhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP--------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~--------~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                      ... ..+.+...+...+..........+++|||++.+.        ..+++.|.+++++         .+..+|+++|..
T Consensus        92 ~~~-~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~---------~~~~~i~~~~~~  161 (195)
T 1jbk_A           92 GAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR---------GELHCVGATTLD  161 (195)
T ss_dssp             TTC-SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT---------TSCCEEEEECHH
T ss_pred             cCC-ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc---------CCeEEEEeCCHH
Confidence            222 2232333333333322233445799999999995        4568888888876         355788888754

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=99.41  E-value=1e-12  Score=115.84  Aligned_cols=116  Identities=13%  Similarity=0.134  Sum_probs=84.9

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++||+.+++.+.+.+..       ...|..+++.||||||||++|+++++.+..        +++.++++..     + 
T Consensus        27 ~ivg~~~~~~~l~~~l~~-------~~~~~~~L~~G~~G~GKT~la~~la~~l~~--------~~~~i~~~~~-----~-   85 (324)
T 3u61_B           27 ECILPAFDKETFKSITSK-------GKIPHIILHSPSPGTGKTTVAKALCHDVNA--------DMMFVNGSDC-----K-   85 (324)
T ss_dssp             TSCCCHHHHHHHHHHHHT-------TCCCSEEEECSSTTSSHHHHHHHHHHHTTE--------EEEEEETTTC-----C-
T ss_pred             HHhCcHHHHHHHHHHHHc-------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCC--------CEEEEccccc-----C-
Confidence            489999998888777762       123446888999999999999999988533        6777776542     1 


Q ss_pred             HHHHHHHHHHHHHHHHHhC----CCeEEEEeCCCCCC-hhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694         159 VSLYRLQLTNWIISNVTAC----DRAIFIFDEVDKFP-KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  226 (247)
Q Consensus       159 v~~~~~~l~~~~~~~l~~~----~~~vlilDEiek~~-~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~  226 (247)
                      +.    .+.+.+.+.....    ..+++||||++.++ .+.++.|++++++..       .++.||+|||...
T Consensus        86 ~~----~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~-------~~~~iI~~~n~~~  147 (324)
T 3u61_B           86 ID----FVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS-------SNCSIIITANNID  147 (324)
T ss_dssp             HH----HHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHG-------GGCEEEEEESSGG
T ss_pred             HH----HHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCC-------CCcEEEEEeCCcc
Confidence            22    1222232222222    45899999999999 999999999999854       5678999998754

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.40  E-value=1.4e-12  Score=120.10  Aligned_cols=130  Identities=15%  Similarity=0.118  Sum_probs=86.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .|.|.+.+++.+.+.+...+..+.     ....|..+||+||||||||++|+++|..+.        .+|+.+..+++..
T Consensus       182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~--------~~f~~v~~s~l~~  253 (434)
T 4b4t_M          182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN--------ATFLKLAAPQLVQ  253 (434)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--------CEEEEEEGGGGCS
T ss_pred             hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC--------CCEEEEehhhhhh
Confidence            489999999999988765443221     023466899999999999999999999853        3899999888754


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------h---hHHHHHhhcccCcccccccCCceEEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------G---LLDVIIPFIDHHAVYNQISFQNTIFL  219 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~---~~~~Ll~~Le~~~~~~~~~~~~~ifI  219 (247)
                      ...+.   -...+...+ ........+++||||+|.+..           .   ....|+..|+...     ...+.++|
T Consensus       254 ~~vGe---se~~ir~lF-~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~-----~~~~ViVI  324 (434)
T 4b4t_M          254 MYIGE---GAKLVRDAF-ALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS-----SDDRVKVL  324 (434)
T ss_dssp             SCSSH---HHHHHHHHH-HHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC-----SSCSSEEE
T ss_pred             cccch---HHHHHHHHH-HHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC-----CCCCEEEE
Confidence            33332   222333333 223344558999999976521           1   2445666665422     12467899


Q ss_pred             EEeCCC
Q psy1694         220 FLSNSG  225 (247)
Q Consensus       220 ~tSN~g  225 (247)
                      +|||..
T Consensus       325 aaTNrp  330 (434)
T 4b4t_M          325 AATNRV  330 (434)
T ss_dssp             EECSSC
T ss_pred             EeCCCc
Confidence            999974

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=99.40  E-value=1.3e-12  Score=114.30  Aligned_cols=125  Identities=16%  Similarity=0.257  Sum_probs=84.8

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++||+.+++.+.+.+...    .   .| .++|+||+|+|||++|+.+++.+.+   .+...+++.++++...+     
T Consensus        26 ~~~g~~~~~~~l~~~l~~~----~---~~-~~ll~G~~G~GKT~la~~l~~~l~~---~~~~~~~~~~~~~~~~~-----   89 (327)
T 1iqp_A           26 DIVGQEHIVKRLKHYVKTG----S---MP-HLLFAGPPGVGKTTAALALARELFG---ENWRHNFLELNASDERG-----   89 (327)
T ss_dssp             TCCSCHHHHHHHHHHHHHT----C---CC-EEEEESCTTSSHHHHHHHHHHHHHG---GGHHHHEEEEETTCHHH-----
T ss_pred             HhhCCHHHHHHHHHHHHcC----C---CC-eEEEECcCCCCHHHHHHHHHHHhcC---CcccCceEEeeccccCc-----
Confidence            4899999998888776542    1   12 4899999999999999999999765   33223456665543210     


Q ss_pred             HHHHHHHHHHHHHH-HHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694         159 VSLYRLQLTNWIIS-NVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  226 (247)
Q Consensus       159 v~~~~~~l~~~~~~-~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~  226 (247)
                      .......+...... .+....+.++++||++.+++..++.|++++++..       .++.||+++|...
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~-------~~~~~i~~~~~~~  151 (327)
T 1iqp_A           90 INVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFS-------SNVRFILSCNYSS  151 (327)
T ss_dssp             HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCGG
T ss_pred             hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcC-------CCCeEEEEeCCcc
Confidence            11111111111100 0112457899999999999999999999999865       5778999988653

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.40  E-value=1.6e-12  Score=116.88  Aligned_cols=131  Identities=18%  Similarity=0.162  Sum_probs=86.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      .++|++.+++.+.+++...+..+.    ....+..++|+||||||||++|+++|+.+.        .+|+.++++++...
T Consensus        52 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--------~~~~~v~~~~l~~~  123 (355)
T 2qp9_X           52 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--------STFFSVSSSDLVSK  123 (355)
T ss_dssp             GSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT--------CEEEEEEHHHHHSC
T ss_pred             HhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--------CCEEEeeHHHHhhh
Confidence            489999999999988764322221    012334689999999999999999999853        37888888766432


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChh-----------hHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694         155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKG-----------LLDVIIPFIDHHAVYNQISFQNTIFLFLSN  223 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~-----------~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN  223 (247)
                      ..   +.....+.. +.........+||||||+|.+++.           +++.|+..|+...    ....++++|++||
T Consensus       124 ~~---g~~~~~~~~-~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----~~~~~v~vI~atn  195 (355)
T 2qp9_X          124 WM---GESEKLVKQ-LFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----NDSQGVLVLGATN  195 (355)
T ss_dssp             C------CHHHHHH-HHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-------CCEEEEEEES
T ss_pred             hc---chHHHHHHH-HHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc----ccCCCeEEEeecC
Confidence            22   211122222 223334456799999999998743           5777887777421    1125688999999


Q ss_pred             CC
Q psy1694         224 SG  225 (247)
Q Consensus       224 ~g  225 (247)
                      ..
T Consensus       196 ~~  197 (355)
T 2qp9_X          196 IP  197 (355)
T ss_dssp             CG
T ss_pred             Cc
Confidence            75

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=99.39  E-value=1.1e-12  Score=114.30  Aligned_cols=125  Identities=17%  Similarity=0.249  Sum_probs=85.7

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++||+.+++.+.+.+..    ..   .| .++|+||+|||||++|+.+++.+.+   .+...+++.++++...+...  
T Consensus        18 ~~~g~~~~~~~l~~~l~~----~~---~~-~~ll~G~~G~GKt~la~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~--   84 (319)
T 2chq_A           18 EVVGQDEVIQRLKGYVER----KN---IP-HLLFSGPPGTGKTATAIALARDLFG---ENWRDNFIEMNASDERGIDV--   84 (319)
T ss_dssp             GSCSCHHHHHHHHTTTTT----TC---CC-CEEEESSSSSSHHHHHHHHHHHHHT---TCHHHHCEEEETTSTTCTTT--
T ss_pred             HHhCCHHHHHHHHHHHhC----CC---CC-eEEEECcCCcCHHHHHHHHHHHhcC---CcccCCeEEEeCccccChHH--
Confidence            489999988877665542    11   22 3899999999999999999999866   44345677777765322111  


Q ss_pred             HHHHHHHHHHHHHH-HHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694         159 VSLYRLQLTNWIIS-NVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  226 (247)
Q Consensus       159 v~~~~~~l~~~~~~-~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~  226 (247)
                      +.   ..+...... .+...++.++|+||++.++++.++.|++++++..       .+++||+++|...
T Consensus        85 ~~---~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~-------~~~~~i~~~~~~~  143 (319)
T 2chq_A           85 VR---HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYS-------KSCRFILSCNYVS  143 (319)
T ss_dssp             SS---HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSS-------SSEEEEEEESCGG
T ss_pred             HH---HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcC-------CCCeEEEEeCChh
Confidence            11   111111100 0112456999999999999999999999999854       6788999988643

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=99.38  E-value=1.5e-12  Score=104.25  Aligned_cols=126  Identities=15%  Similarity=0.188  Sum_probs=81.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCC-----CCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-----GTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g-----~~~~~v~~~~~~l~~  153 (247)
                      .++|++..++.+.+.+..    .    .+..++|+||+|||||++|+.+++.+..   ..     ...+++.+++..+..
T Consensus        23 ~~~g~~~~~~~l~~~l~~----~----~~~~vll~G~~G~GKT~la~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~   91 (187)
T 2p65_A           23 PVIGRDTEIRRAIQILSR----R----TKNNPILLGDPGVGKTAIVEGLAIKIVQ---GDVPDSLKGRKLVSLDLSSLIA   91 (187)
T ss_dssp             CCCSCHHHHHHHHHHHTS----S----SSCEEEEESCGGGCHHHHHHHHHHHHHT---TCSCTTTTTCEEEEECHHHHHH
T ss_pred             hhhcchHHHHHHHHHHhC----C----CCCceEEECCCCCCHHHHHHHHHHHHHh---cCCcchhcCCeEEEEeHHHhhc
Confidence            589999988888776643    1    2236799999999999999999998643   11     123455555443321


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCCC---------hhhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTAC-DRAIFIFDEVDKFP---------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  223 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~-~~~vlilDEiek~~---------~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN  223 (247)
                      .. ...+.....+...+ ..+..+ ...++||||++.++         ..+++.|++.+++         .+.++|+++|
T Consensus        92 ~~-~~~~~~~~~~~~~~-~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~---------~~~~ii~~~~  160 (187)
T 2p65_A           92 GA-KYRGDFEERLKSIL-KEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR---------GELRCIGATT  160 (187)
T ss_dssp             HC-CSHHHHHHHHHHHH-HHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT---------TCSCEEEEEC
T ss_pred             CC-CchhHHHHHHHHHH-HHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc---------CCeeEEEecC
Confidence            11 11222333333333 333444 45799999999997         5678888888876         4567888888


Q ss_pred             CCh
Q psy1694         224 SGG  226 (247)
Q Consensus       224 ~g~  226 (247)
                      ...
T Consensus       161 ~~~  163 (187)
T 2p65_A          161 VSE  163 (187)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.38  E-value=6.2e-13  Score=116.71  Aligned_cols=130  Identities=15%  Similarity=0.221  Sum_probs=84.4

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .++|++.+++.+.+.+...+..+.     ....|..++|+||||||||++|+++|+.+.        .+|+.++++.+..
T Consensus        16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--------~~~i~v~~~~l~~   87 (301)
T 3cf0_A           16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--------ANFISIKGPELLT   87 (301)
T ss_dssp             GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--------CEEEEECHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--------CCEEEEEhHHHHh
Confidence            389999999999988864322110     012345789999999999999999998742        4788888765421


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChh--------------hHHHHHhhcccCcccccccCCceEEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKG--------------LLDVIIPFIDHHAVYNQISFQNTIFL  219 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~--------------~~~~Ll~~Le~~~~~~~~~~~~~ifI  219 (247)
                      .   .++.....+...+ ........+++||||+|.+.+.              +++.|+..|+.-.     ...+.++|
T Consensus        88 ~---~~g~~~~~~~~~f-~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~-----~~~~v~vi  158 (301)
T 3cf0_A           88 M---WFGESEANVREIF-DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----TKKNVFII  158 (301)
T ss_dssp             H---HHTTCTTHHHHHH-HHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-----TTSSEEEE
T ss_pred             h---hcCchHHHHHHHH-HHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-----CCCCEEEE
Confidence            0   0000001112222 2223445689999999976542              4788888887521     22578899


Q ss_pred             EEeCCC
Q psy1694         220 FLSNSG  225 (247)
Q Consensus       220 ~tSN~g  225 (247)
                      ++||..
T Consensus       159 ~atn~~  164 (301)
T 3cf0_A          159 GATNRP  164 (301)
T ss_dssp             EEESCG
T ss_pred             EecCCc
Confidence            999975

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.36  E-value=3.7e-12  Score=117.83  Aligned_cols=132  Identities=19%  Similarity=0.164  Sum_probs=83.2

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccC----CCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~----~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      .++|++.+++.+.+.+...+..+.-    ...|..++|+||||||||++|+++|+.+..       .+|+.++++.+...
T Consensus       135 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~-------~~~~~v~~~~l~~~  207 (444)
T 2zan_A          135 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-------STFFSISSSDLVSK  207 (444)
T ss_dssp             GSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS-------SEEEEECCC-----
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC-------CCEEEEeHHHHHhh
Confidence            4889999999998887533222110    123457899999999999999999988522       47888887765322


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694         155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  223 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN  223 (247)
                      ..+.   ....+.. +.........+||||||+|.+.+           .+++.|+..++...    .+..+++||++||
T Consensus       208 ~~g~---~~~~~~~-~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~----~~~~~v~vI~atn  279 (444)
T 2zan_A          208 WLGE---SEKLVKN-LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG----VDNDGILVLGATN  279 (444)
T ss_dssp             -------CCCTHHH-HHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS----CCCSSCEEEEEES
T ss_pred             hcch---HHHHHHH-HHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc----cCCCCEEEEecCC
Confidence            1111   0001111 22333455679999999999843           35677777776521    1235788999999


Q ss_pred             CC
Q psy1694         224 SG  225 (247)
Q Consensus       224 ~g  225 (247)
                      ..
T Consensus       280 ~~  281 (444)
T 2zan_A          280 IP  281 (444)
T ss_dssp             CG
T ss_pred             Cc
Confidence            75

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=99.36  E-value=1.6e-12  Score=121.92  Aligned_cols=137  Identities=15%  Similarity=0.124  Sum_probs=88.5

Q ss_pred             ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694          67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK  146 (247)
Q Consensus        67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~  146 (247)
                      ...+.+...+...++||+.+++.+..++..    ..      .++|+||||||||++|+++|+.+..      ..+|...
T Consensus        11 ~~~~~l~~~l~~~ivGq~~~i~~l~~al~~----~~------~VLL~GpPGtGKT~LAraLa~~l~~------~~~f~~~   74 (500)
T 3nbx_X           11 ERISRLSSSLEKGLYERSHAIRLCLLAALS----GE------SVFLLGPPGIAKSLIARRLKFAFQN------ARAFEYL   74 (500)
T ss_dssp             HHHHHHHHHHHTTCSSCHHHHHHHHHHHHH----TC------EEEEECCSSSSHHHHHHHGGGGBSS------CCEEEEE
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhc----CC------eeEeecCchHHHHHHHHHHHHHHhh------hhHHHHH
Confidence            345678888999999999999877665542    22      5799999999999999999886421      2355555


Q ss_pred             ecc-----cccCCCCChHHHHHHHHHHHHHHHHHhC------CCeEEEEeCCCCCChhhHHHHHhhcccCcccc-c--cc
Q psy1694         147 FNS-----RIHFPNENHVSLYRLQLTNWIISNVTAC------DRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q--IS  212 (247)
Q Consensus       147 ~~~-----~l~~~~~~~v~~~~~~l~~~~~~~l~~~------~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-~--~~  212 (247)
                      ++.     ++++.....     .   ..-.+.+...      ..+++|||||+++++..++.|+++|+++.+.. +  ..
T Consensus        75 ~~~~~t~~dL~G~~~~~-----~---~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~  146 (500)
T 3nbx_X           75 MTRFSTPEEVFGPLSIQ-----A---LKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEK  146 (500)
T ss_dssp             CCTTCCHHHHHCCBC------------------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEE
T ss_pred             HHhcCCHHHhcCcccHH-----H---HhhchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCC
Confidence            542     222211100     0   0001222222      23589999999999999999999999986542 2  23


Q ss_pred             CCceEEEEEeCCChH
Q psy1694         213 FQNTIFLFLSNSGGT  227 (247)
Q Consensus       213 ~~~~ifI~tSN~g~~  227 (247)
                      ....++|++||.-++
T Consensus       147 ~~~~~iI~ATN~lpe  161 (500)
T 3nbx_X          147 IPMRLLVAASNELPE  161 (500)
T ss_dssp             CCCCEEEEEESSCCC
T ss_pred             cchhhhhhccccCCC
Confidence            333356888885433

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=99.36  E-value=2.9e-12  Score=118.71  Aligned_cols=105  Identities=24%  Similarity=0.308  Sum_probs=68.7

Q ss_pred             hcCChHHHH---HHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCC
Q psy1694          79 HVHGQELAI---SHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN  155 (247)
Q Consensus        79 ~l~Gq~~a~---~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~  155 (247)
                      .++||+.++   ..+...+...        ++..++|+||||||||++|++|++.+.        .+|+.+++...    
T Consensus        27 ~ivGq~~~~~~~~~L~~~i~~~--------~~~~vLL~GppGtGKTtlAr~ia~~~~--------~~f~~l~a~~~----   86 (447)
T 3pvs_A           27 QYIGQQHLLAAGKPLPRAIEAG--------HLHSMILWGPPGTGKTTLAEVIARYAN--------ADVERISAVTS----   86 (447)
T ss_dssp             TCCSCHHHHSTTSHHHHHHHHT--------CCCEEEEECSTTSSHHHHHHHHHHHTT--------CEEEEEETTTC----
T ss_pred             HhCCcHHHHhchHHHHHHHHcC--------CCcEEEEECCCCCcHHHHHHHHHHHhC--------CCeEEEEeccC----
Confidence            499999998   6676666542        122689999999999999999998842        36777765331    


Q ss_pred             CChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694         156 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA  206 (247)
Q Consensus       156 ~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~  206 (247)
                        .+...++.+.. .........++++||||++.++...|+.|++.++++.
T Consensus        87 --~~~~ir~~~~~-a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~  134 (447)
T 3pvs_A           87 --GVKEIREAIER-ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT  134 (447)
T ss_dssp             --CHHHHHHHHHH-HHHHHHTTCCEEEEEETTTCC------CCHHHHHTTS
T ss_pred             --CHHHHHHHHHH-HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCc
Confidence              12222222222 2222334667999999999999999999999999854

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.34  E-value=1.7e-11  Score=113.59  Aligned_cols=51  Identities=25%  Similarity=0.200  Sum_probs=40.4

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .++||+.+++.+...+........   .|..++|+||||||||++|+++|+.+.
T Consensus        38 ~iiG~~~~~~~l~~~~~~~~~~~~---~~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           38 GLVGQENAREACGVIVELIKSKKM---AGRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             TEESCHHHHHHHHHHHHHHHTTCC---TTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             hccCHHHHHHHHHHHHHHHHhCCC---CCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            589999999988776654433222   345789999999999999999999864

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.33  E-value=1e-11  Score=114.71  Aligned_cols=76  Identities=21%  Similarity=0.283  Sum_probs=56.3

Q ss_pred             cHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhccc-----C-CCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCC
Q psy1694          68 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRY-----H-NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS  141 (247)
Q Consensus        68 ~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~-----~-~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~  141 (247)
                      ..+.+.+.|++.|+||+.+++.+..++...+....     . ...|..++|+||||||||++|+++|+.+..        
T Consensus         5 tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~--------   76 (444)
T 1g41_A            5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA--------   76 (444)
T ss_dssp             CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC--------
T ss_pred             CHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC--------
Confidence            45778899999999999999999888865321110     0 113457999999999999999999998532        


Q ss_pred             cceeeecccc
Q psy1694         142 RFVHKFNSRI  151 (247)
Q Consensus       142 ~~v~~~~~~l  151 (247)
                      +|+.++++.+
T Consensus        77 ~~~~v~~~~~   86 (444)
T 1g41_A           77 PFIKVEATKF   86 (444)
T ss_dssp             CEEEEEGGGG
T ss_pred             Cceeecchhh
Confidence            5666655443

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.30  E-value=5.1e-12  Score=110.29  Aligned_cols=120  Identities=18%  Similarity=0.253  Sum_probs=83.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++||+.+++.+.+.+..    ..   .| .++|+||+|+|||++|+.+++.+.+   .+...+++.++++..     ..
T Consensus        22 ~~~g~~~~~~~l~~~l~~----~~---~~-~~ll~G~~G~GKt~la~~l~~~l~~---~~~~~~~~~~~~~~~-----~~   85 (323)
T 1sxj_B           22 DIVGNKETIDRLQQIAKD----GN---MP-HMIISGMPGIGKTTSVHCLAHELLG---RSYADGVLELNASDD-----RG   85 (323)
T ss_dssp             GCCSCTHHHHHHHHHHHS----CC---CC-CEEEECSTTSSHHHHHHHHHHHHHG---GGHHHHEEEECTTSC-----CS
T ss_pred             HHHCCHHHHHHHHHHHHc----CC---CC-eEEEECcCCCCHHHHHHHHHHHhcC---CcccCCEEEecCccc-----cC
Confidence            489999998888777653    11   23 3899999999999999999999765   332334555554431     11


Q ss_pred             HHHHHHHHHHHHHHHHH------hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         159 VSLYRLQLTNWIISNVT------ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       159 v~~~~~~l~~~~~~~l~------~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                      +...    .+.+.....      ...+.++||||++.++...++.|++.+++..       .++.||++||..
T Consensus        86 ~~~i----~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-------~~~~~il~~~~~  147 (323)
T 1sxj_B           86 IDVV----RNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYS-------NSTRFAFACNQS  147 (323)
T ss_dssp             HHHH----HTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTT-------TTEEEEEEESCG
T ss_pred             hHHH----HHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccC-------CCceEEEEeCCh
Confidence            2222    222222110      2236899999999999999999999999865       677888888764

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.28  E-value=7e-12  Score=111.48  Aligned_cols=120  Identities=20%  Similarity=0.247  Sum_probs=82.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++||+.+++.+...+..    ..   -| .++|+||+|||||++|+++++.+.+   ......+..++.+..     ..
T Consensus        26 ~~~g~~~~~~~L~~~i~~----g~---~~-~~ll~Gp~G~GKTtla~~la~~l~~---~~~~~~~~~~~~~~~-----~~   89 (340)
T 1sxj_C           26 EVYGQNEVITTVRKFVDE----GK---LP-HLLFYGPPGTGKTSTIVALAREIYG---KNYSNMVLELNASDD-----RG   89 (340)
T ss_dssp             GCCSCHHHHHHHHHHHHT----TC---CC-CEEEECSSSSSHHHHHHHHHHHHHT---TSHHHHEEEECTTSC-----CS
T ss_pred             HhcCcHHHHHHHHHHHhc----CC---Cc-eEEEECCCCCCHHHHHHHHHHHHcC---CCccceEEEEcCccc-----cc
Confidence            488999988888776653    11   22 3799999999999999999999876   322223444443321     11


Q ss_pred             HHHHHHHHHHHHHHHHHh-----CCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         159 VSLYRLQLTNWIISNVTA-----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       159 v~~~~~~l~~~~~~~l~~-----~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                      +..    +.+.+......     ..+.++++||++.|+.+.++.|++++++++       .++.||+++|..
T Consensus        90 ~~~----ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-------~~~~~il~~n~~  150 (340)
T 1sxj_C           90 IDV----VRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYT-------KNTRFCVLANYA  150 (340)
T ss_dssp             HHH----HHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCG
T ss_pred             HHH----HHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCC-------CCeEEEEEecCc
Confidence            221    22222222211     236999999999999999999999999875       577888888854

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.28  E-value=2.7e-11  Score=103.29  Aligned_cols=129  Identities=16%  Similarity=0.178  Sum_probs=81.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .++|++.+++.+.+.+.. +..+.     ....|..++|+||||||||++|+++++.+.        .+++.++++.+..
T Consensus        13 ~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--------~~~~~i~~~~~~~   83 (257)
T 1lv7_A           13 DVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--------VPFFTISGSDFVE   83 (257)
T ss_dssp             GSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT--------CCEEEECSCSSTT
T ss_pred             HhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--------CCEEEEeHHHHHH
Confidence            489999999988876653 22211     012345689999999999999999998742        3688888766533


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCceEEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFL  219 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI  219 (247)
                      ...+..   ...+...+ ........+++|+||+|.++.              ..++.++..++...     ...+.++|
T Consensus        84 ~~~~~~---~~~~~~~~-~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~~~~vI  154 (257)
T 1lv7_A           84 MFVGVG---ASRVRDMF-EQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----GNEGIIVI  154 (257)
T ss_dssp             SCCCCC---HHHHHHHH-HHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC-----SSSCEEEE
T ss_pred             Hhhhhh---HHHHHHHH-HHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc-----cCCCEEEE
Confidence            222211   11122222 222334457999999977654              24455666665421     12567889


Q ss_pred             EEeCCC
Q psy1694         220 FLSNSG  225 (247)
Q Consensus       220 ~tSN~g  225 (247)
                      ++||..
T Consensus       155 ~~tn~~  160 (257)
T 1lv7_A          155 AATNRP  160 (257)
T ss_dssp             EEESCT
T ss_pred             EeeCCc
Confidence            999875

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.28  E-value=4.2e-11  Score=111.64  Aligned_cols=145  Identities=20%  Similarity=0.181  Sum_probs=91.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhc----ccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          79 HVHGQELAISHICGALKNHFQN----RYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~----~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      .+.|++.+++.+.+.+......    ......|..++|+||||||||++|+++|..+.        .+|+.++++++...
T Consensus        17 di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~--------~~f~~is~~~~~~~   88 (476)
T 2ce7_A           17 DVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN--------VPFFHISGSDFVEL   88 (476)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT--------CCEEEEEGGGTTTC
T ss_pred             HhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC--------CCeeeCCHHHHHHH
Confidence            4999999999998877643210    00122455689999999999999999998742        48899988776432


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCceEEEE
Q psy1694         155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFLF  220 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~  220 (247)
                      ..+.   -...+...+. .......++|||||+|.++.              ..++.|+..|+.-.     .-.+.++|+
T Consensus        89 ~~g~---~~~~~r~lf~-~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~-----~~~~viVIa  159 (476)
T 2ce7_A           89 FVGV---GAARVRDLFA-QAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD-----SKEGIIVMA  159 (476)
T ss_dssp             CTTH---HHHHHHHHHH-HHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC-----GGGTEEEEE
T ss_pred             Hhcc---cHHHHHHHHH-HHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC-----CCCCEEEEE
Confidence            2221   1112222332 22334568999999999865              25677777776421     114678999


Q ss_pred             EeCCChHHHHHHHHHHHHcCcccc
Q psy1694         221 LSNSGGTEIMNTFLELRKSGERYI  244 (247)
Q Consensus       221 tSN~g~~~i~~~~~~~~~~g~~Re  244 (247)
                      +||.. +.+..   ..++.||++.
T Consensus       160 aTn~~-~~Ld~---allR~gRFd~  179 (476)
T 2ce7_A          160 ATNRP-DILDP---ALLRPGRFDK  179 (476)
T ss_dssp             EESCG-GGSCG---GGGSTTSSCE
T ss_pred             ecCCh-hhhch---hhcccCccee
Confidence            99984 22222   2345566654

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.28  E-value=3.4e-12  Score=113.05  Aligned_cols=127  Identities=21%  Similarity=0.238  Sum_probs=82.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++|++.+++.+...+..    ..   .| .++|+||||||||++|+++++.+...  ......++.++++..     ..
T Consensus        38 ~i~g~~~~~~~l~~~l~~----~~---~~-~~ll~G~~G~GKT~la~~la~~l~~~--~~~~~~~~~~~~~~~-----~~  102 (353)
T 1sxj_D           38 EVTAQDHAVTVLKKTLKS----AN---LP-HMLFYGPPGTGKTSTILALTKELYGP--DLMKSRILELNASDE-----RG  102 (353)
T ss_dssp             TCCSCCTTHHHHHHHTTC----TT---CC-CEEEECSTTSSHHHHHHHHHHHHHHH--HHHTTSEEEECSSSC-----CC
T ss_pred             HhhCCHHHHHHHHHHHhc----CC---CC-EEEEECCCCCCHHHHHHHHHHHhCCC--cccccceEEEccccc-----cc
Confidence            489999888877666542    11   12 37999999999999999999997541  111234555555432     11


Q ss_pred             HHHHHHHHHHHHHH-----------HHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694         159 VSLYRLQLTNWIIS-----------NVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  227 (247)
Q Consensus       159 v~~~~~~l~~~~~~-----------~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~  227 (247)
                      +..+.+.+......           ......+.++|+||++.+++..++.|++.+++..       .++.||+++|...+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~-------~~~~~il~~~~~~~  175 (353)
T 1sxj_D          103 ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS-------GVTRFCLICNYVTR  175 (353)
T ss_dssp             HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCGGG
T ss_pred             hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC-------CCceEEEEeCchhh
Confidence            22122111111100           0011345799999999999999999999999865       56788888886543

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=99.26  E-value=1.4e-11  Score=108.62  Aligned_cols=119  Identities=8%  Similarity=0.085  Sum_probs=77.9

Q ss_pred             ChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHH
Q psy1694          82 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSL  161 (247)
Q Consensus        82 Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~  161 (247)
                      ||+.+++.+.+.++..        ++-.++|+||+|+|||++|+++++.....  .....++..++.+.    ....++.
T Consensus         1 g~~~~~~~L~~~i~~~--------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~--~~~~~d~~~l~~~~----~~~~id~   66 (305)
T 2gno_A            1 GAKDQLETLKRIIEKS--------EGISILINGEDLSYPREVSLELPEYVEKF--PPKASDVLEIDPEG----ENIGIDD   66 (305)
T ss_dssp             ---CHHHHHHHHHHTC--------SSEEEEEECSSSSHHHHHHHHHHHHHHTS--CCCTTTEEEECCSS----SCBCHHH
T ss_pred             ChHHHHHHHHHHHHCC--------CCcEEEEECCCCCCHHHHHHHHHHhCchh--hccCCCEEEEcCCc----CCCCHHH
Confidence            6777888887777632        12278999999999999999999863210  11122444443211    0112221


Q ss_pred             HHHHHHHHHHHHHHhC----CCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694         162 YRLQLTNWIISNVTAC----DRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  226 (247)
Q Consensus       162 ~~~~l~~~~~~~l~~~----~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~  226 (247)
                          +.. +.......    ++.|+|+||+|.|..+.+++|++.||+++       .+++||++||...
T Consensus        67 ----ir~-li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~-------~~t~fIl~t~~~~  123 (305)
T 2gno_A           67 ----IRT-IKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPP-------EYAVIVLNTRRWH  123 (305)
T ss_dssp             ----HHH-HHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCC-------TTEEEEEEESCGG
T ss_pred             ----HHH-HHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCC-------CCeEEEEEECChH
Confidence                222 22333333    35899999999999999999999999987       7899999998643

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=99.26  E-value=1.7e-11  Score=108.35  Aligned_cols=133  Identities=17%  Similarity=0.200  Sum_probs=84.4

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec
Q psy1694          69 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN  148 (247)
Q Consensus        69 ~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~  148 (247)
                      .+.++..+...++||+.+++.+..++..    ..      .++|+||||||||++|+++++.+..        +++.+++
T Consensus        18 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~----~~------~vll~G~pGtGKT~la~~la~~~~~--------~~~~i~~   79 (331)
T 2r44_A           18 IKEVIDEVGKVVVGQKYMINRLLIGICT----GG------HILLEGVPGLAKTLSVNTLAKTMDL--------DFHRIQF   79 (331)
T ss_dssp             HHHHHHHHTTTCCSCHHHHHHHHHHHHH----TC------CEEEESCCCHHHHHHHHHHHHHTTC--------CEEEEEC
T ss_pred             HHHHHHHhccceeCcHHHHHHHHHHHHc----CC------eEEEECCCCCcHHHHHHHHHHHhCC--------CeEEEec
Confidence            4567777888899999998877766653    22      5799999999999999999987532        5666655


Q ss_pred             ccccCCCCChHHHHHHHHHHHHHHH--HHhC--CCeEEEEeCCCCCChhhHHHHHhhcccCcccc-cc---cCCceEEEE
Q psy1694         149 SRIHFPNENHVSLYRLQLTNWIISN--VTAC--DRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-QI---SFQNTIFLF  220 (247)
Q Consensus       149 ~~l~~~~~~~v~~~~~~l~~~~~~~--l~~~--~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-~~---~~~~~ifI~  220 (247)
                      ..-..+ ...++..   ..+...+.  +...  ..+++||||++++++..++.|++.++++.+.. +.   .-.+.++|.
T Consensus        80 ~~~~~~-~~l~g~~---~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~via  155 (331)
T 2r44_A           80 TPDLLP-SDLIGTM---IYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLA  155 (331)
T ss_dssp             CTTCCH-HHHHEEE---EEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEE
T ss_pred             CCCCCh-hhcCCce---eecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEE
Confidence            210000 0000000   00000000  0000  13799999999999999999999999875432 11   123567778


Q ss_pred             EeC
Q psy1694         221 LSN  223 (247)
Q Consensus       221 tSN  223 (247)
                      |+|
T Consensus       156 t~n  158 (331)
T 2r44_A          156 TQN  158 (331)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            888

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.25  E-value=1.6e-12  Score=111.45  Aligned_cols=131  Identities=17%  Similarity=0.161  Sum_probs=78.8

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .++|++.+++.+.+.+... ..+.     ....|..++|+||||||||++|+++|+.+..        +|+.++++.+..
T Consensus        12 ~i~G~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--------~~~~v~~~~~~~   82 (268)
T 2r62_A           12 DMAGNEEAKEEVVEIVDFL-KYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV--------PFFSMGGSSFIE   82 (268)
T ss_dssp             TSSSCTTTHHHHHHHHHHH-HCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC--------CCCCCCSCTTTT
T ss_pred             HhCCcHHHHHHHHHHHHHH-HChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--------CEEEechHHHHH
Confidence            3889999988888776532 1110     0123345799999999999999999988532        677777655422


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChh---------------hHHHHHhhcccCcccccccCCceEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKG---------------LLDVIIPFIDHHAVYNQISFQNTIF  218 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~---------------~~~~Ll~~Le~~~~~~~~~~~~~if  218 (247)
                      ...+...   ..+...+ ........+++||||+|.++..               .++.|+..++...    ....+.++
T Consensus        83 ~~~~~~~---~~~~~~~-~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----~~~~~v~v  154 (268)
T 2r62_A           83 MFVGLGA---SRVRDLF-ETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG----SENAPVIV  154 (268)
T ss_dssp             SCSSSCS---SSSSTTH-HHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS----CSCSCCEE
T ss_pred             hhcchHH---HHHHHHH-HHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc----cCCCCEEE
Confidence            1111000   0001111 1222345589999999998753               3555666665421    12245789


Q ss_pred             EEEeCCCh
Q psy1694         219 LFLSNSGG  226 (247)
Q Consensus       219 I~tSN~g~  226 (247)
                      |+|||...
T Consensus       155 i~ttn~~~  162 (268)
T 2r62_A          155 LAATNRPE  162 (268)
T ss_dssp             EECBSCCT
T ss_pred             EEecCCch
Confidence            99999763

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=99.23  E-value=4.8e-11  Score=106.17  Aligned_cols=122  Identities=8%  Similarity=0.133  Sum_probs=77.3

Q ss_pred             ChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCC--Cccee------------ee
Q psy1694          82 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT--SRFVH------------KF  147 (247)
Q Consensus        82 Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~--~~~v~------------~~  147 (247)
                      .|..+.+.+.++++..       +.|-.++|+||+|+|||++|+.+|+.+.+   ....  .++-.            .+
T Consensus         6 w~~~~~~~l~~~i~~~-------~~~~a~L~~G~~G~GKt~~a~~la~~l~~---~~~~~~~~c~~c~~c~~~~~~~~~d   75 (334)
T 1a5t_A            6 WLRPDFEKLVASYQAG-------RGHHALLIQALPGMGDDALIYALSRYLLC---QQPQGHKSCGHCRGCQLMQAGTHPD   75 (334)
T ss_dssp             GGHHHHHHHHHHHHTT-------CCCSEEEEECCTTSCHHHHHHHHHHHHTC---SSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred             chHHHHHHHHHHHHcC-------CcceeEEEECCCCchHHHHHHHHHHHHhC---CCCCCCCCCCCCHHHHHHhcCCCCC
Confidence            3566666666665531       13336899999999999999999999876   2211  01000            00


Q ss_pred             cccccCC---CCChHHHHHHHHHHHHHHHHHh----CCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEE
Q psy1694         148 NSRIHFP---NENHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLF  220 (247)
Q Consensus       148 ~~~l~~~---~~~~v~~~~~~l~~~~~~~l~~----~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~  220 (247)
                      ...+...   ....++.    +.+ +...+..    .++.|+|+||+|+|+.+.++.|++.||+++       .+++||+
T Consensus        76 ~~~~~~~~~~~~~~i~~----ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~-------~~~~~Il  143 (334)
T 1a5t_A           76 YYTLAPEKGKNTLGVDA----VRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPP-------AETWFFL  143 (334)
T ss_dssp             EEEECCCTTCSSBCHHH----HHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCC-------TTEEEEE
T ss_pred             EEEEeccccCCCCCHHH----HHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCC-------CCeEEEE
Confidence            0111111   0111221    222 2223332    346999999999999999999999999976       6889999


Q ss_pred             EeCCC
Q psy1694         221 LSNSG  225 (247)
Q Consensus       221 tSN~g  225 (247)
                      +||..
T Consensus       144 ~t~~~  148 (334)
T 1a5t_A          144 ATREP  148 (334)
T ss_dssp             EESCG
T ss_pred             EeCCh
Confidence            99874

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.22  E-value=1.9e-10  Score=95.03  Aligned_cols=127  Identities=15%  Similarity=0.242  Sum_probs=77.4

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCC--Ccceee-ec-------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT--SRFVHK-FN-------  148 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~--~~~v~~-~~-------  148 (247)
                      .++|++.+++.+.+.+...       ..|..++|+||+|+|||++++.+++.+..   ....  .++... .+       
T Consensus        24 ~~~g~~~~~~~l~~~l~~~-------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~   93 (250)
T 1njg_A           24 DVVGQEHVLTALANGLSLG-------RIHHAYLFSGTRGVGKTSIARLLAKGLNC---ETGITATPCGVCDNCREIEQGR   93 (250)
T ss_dssp             GCCSCHHHHHHHHHHHHHT-------CCCSEEEEECSTTSCHHHHHHHHHHHHHC---TTCSCSSCCSCSHHHHHHHTTC
T ss_pred             HHhCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcC---CCCCCCCCCcccHHHHHHhccC
Confidence            4899999998888777641       12336899999999999999999988654   2110  000000 00       


Q ss_pred             -cc-ccCCCCChHHHHHHHHHHHHHHHHH----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694         149 -SR-IHFPNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  222 (247)
Q Consensus       149 -~~-l~~~~~~~v~~~~~~l~~~~~~~l~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS  222 (247)
                       .. +....... . ....+...+ ..+.    .....++||||++.+++..++.|++.+++..       .+..+|++|
T Consensus        94 ~~~~~~~~~~~~-~-~~~~~~~~~-~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~-------~~~~~i~~t  163 (250)
T 1njg_A           94 FVDLIEIDAASR-T-KVEDTRDLL-DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-------EHVKFLLAT  163 (250)
T ss_dssp             CSSEEEEETTCG-G-GHHHHHHHH-HSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCC-------TTEEEEEEE
T ss_pred             CcceEEecCccc-c-cHHHHHHHH-HHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCC-------CceEEEEEe
Confidence             00 00000111 0 111111111 1111    1235899999999999999999999998753       567888888


Q ss_pred             CCC
Q psy1694         223 NSG  225 (247)
Q Consensus       223 N~g  225 (247)
                      |..
T Consensus       164 ~~~  166 (250)
T 1njg_A          164 TDP  166 (250)
T ss_dssp             SCG
T ss_pred             CCh
Confidence            764

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.21  E-value=6.8e-11  Score=104.88  Aligned_cols=137  Identities=5%  Similarity=0.010  Sum_probs=85.3

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCC-C-CCcceeeecccccCCCC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-G-TSRFVHKFNSRIHFPNE  156 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g-~-~~~~v~~~~~~l~~~~~  156 (247)
                      .+.|.+.-++.+...+...+...    +|..++++||||||||++++.+++.+......+ . .-.++++||..+..+..
T Consensus        21 ~L~~Re~E~~~i~~~L~~~i~~~----~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~   96 (318)
T 3te6_A           21 LLKSQVEDFTRIFLPIYDSLMSS----QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDA   96 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT----CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HH
T ss_pred             ccCCHHHHHHHHHHHHHHHhcCC----CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHH
Confidence            48899999999998888876533    566789999999999999999999975410010 1 23577888755422110


Q ss_pred             ChHHHHHH---------HHHHHHHHHHH-----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694         157 NHVSLYRL---------QLTNWIISNVT-----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  222 (247)
Q Consensus       157 ~~v~~~~~---------~l~~~~~~~l~-----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS  222 (247)
                      -+..-++.         .....+...+.     .....+++|||+|.+.  -|+.|.++++-..    .+..+.++|+++
T Consensus        97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~----~~~s~~~vI~i~  170 (318)
T 3te6_A           97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWIS----SKNSKLSIICVG  170 (318)
T ss_dssp             HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHH----CSSCCEEEEEEC
T ss_pred             HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhccc----ccCCcEEEEEEe
Confidence            00000000         00111222222     2234799999999998  5777777775311    123578899999


Q ss_pred             CCC
Q psy1694         223 NSG  225 (247)
Q Consensus       223 N~g  225 (247)
                      |.-
T Consensus       171 n~~  173 (318)
T 3te6_A          171 GHN  173 (318)
T ss_dssp             CSS
T ss_pred             cCc
Confidence            875

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.19  E-value=1.4e-10  Score=103.55  Aligned_cols=138  Identities=15%  Similarity=0.165  Sum_probs=88.7

Q ss_pred             hhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC---
Q psy1694          78 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP---  154 (247)
Q Consensus        78 ~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~---  154 (247)
                      ..++|++..++.+.+.+.....+..  ..+..++|+||+|||||++++.+++.+..   .. ..+++.++|.....+   
T Consensus        17 ~~l~gr~~~~~~l~~~l~~~~~~~~--~~~~~~li~G~~G~GKTtl~~~l~~~~~~---~~-~~~~~~i~~~~~~~~~~~   90 (389)
T 1fnn_A           17 KRLPHREQQLQQLDILLGNWLRNPG--HHYPRATLLGRPGTGKTVTLRKLWELYKD---KT-TARFVYINGFIYRNFTAI   90 (389)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHSTT--SSCCEEEEECCTTSSHHHHHHHHHHHHTT---SC-CCEEEEEETTTCCSHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCC--CCCCeEEEECCCCCCHHHHHHHHHHHHhh---hc-CeeEEEEeCccCCCHHHH
Confidence            3599999999999998887654432  12126889999999999999999988644   21 235677776432110   


Q ss_pred             -----------CCChHHHHHHHHHHHHHHHHHhCC-CeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694         155 -----------NENHVSLYRLQLTNWIISNVTACD-RAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  222 (247)
Q Consensus       155 -----------~~~~v~~~~~~l~~~~~~~l~~~~-~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS  222 (247)
                                 .+.. +.....+...+...+.... ..+|||||++.+++..+..|++.+++...   ..-.+..+|++|
T Consensus        91 ~~~l~~~l~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~---~~~~~~~iI~~~  166 (389)
T 1fnn_A           91 IGEIARSLNIPFPRR-GLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADK---LGAFRIALVIVG  166 (389)
T ss_dssp             HHHHHHHTTCCCCSS-CCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHH---HSSCCEEEEEEE
T ss_pred             HHHHHHHhCccCCCC-CCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCC---CCcCCEEEEEEE
Confidence                       0000 0001112223333333333 57999999999999999999999976320   001367888888


Q ss_pred             CCC
Q psy1694         223 NSG  225 (247)
Q Consensus       223 N~g  225 (247)
                      |..
T Consensus       167 ~~~  169 (389)
T 1fnn_A          167 HND  169 (389)
T ss_dssp             SST
T ss_pred             CCc
Confidence            865

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.19  E-value=2.4e-11  Score=108.73  Aligned_cols=135  Identities=19%  Similarity=0.208  Sum_probs=82.6

Q ss_pred             hhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccc--cCCC-CCcceeeecccccCC
Q psy1694          78 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY--KDKG-TSRFVHKFNSRIHFP  154 (247)
Q Consensus        78 ~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~--~~g~-~~~~v~~~~~~l~~~  154 (247)
                      +.++|++..++.+.+.+..+....    .|..++|+||+|||||++|+.+++.+....  ..+. ..+++.++|......
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~~~~----~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   95 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFVKNE----VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGT   95 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHTTC----CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCC----CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCC
Confidence            569999999999999888765432    344789999999999999999999864310  0112 456788887553200


Q ss_pred             CCChHHHHH---------------HHHHHHHHHHHHhCCCeEEEEeCCCCCChhh-HHH-HHhhcccCcccccccCCceE
Q psy1694         155 NENHVSLYR---------------LQLTNWIISNVTACDRAIFIFDEVDKFPKGL-LDV-IIPFIDHHAVYNQISFQNTI  217 (247)
Q Consensus       155 ~~~~v~~~~---------------~~l~~~~~~~l~~~~~~vlilDEiek~~~~~-~~~-Ll~~Le~~~~~~~~~~~~~i  217 (247)
                      .........               ..+...+...+...+ .+|||||++.++..- ++. +..+++..        .+..
T Consensus        96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~~~~~l~~l~~~~--------~~~~  166 (384)
T 2qby_B           96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRGGDIVLYQLLRSD--------ANIS  166 (384)
T ss_dssp             HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTTSHHHHHHHHTSS--------SCEE
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCCCceeHHHHhcCC--------cceE
Confidence            000000000               111222323333332 399999999987542 444 44443321        5678


Q ss_pred             EEEEeCCC
Q psy1694         218 FLFLSNSG  225 (247)
Q Consensus       218 fI~tSN~g  225 (247)
                      +|+|||..
T Consensus       167 iI~~t~~~  174 (384)
T 2qby_B          167 VIMISNDI  174 (384)
T ss_dssp             EEEECSST
T ss_pred             EEEEECCC
Confidence            88888865

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=99.19  E-value=7.5e-11  Score=105.08  Aligned_cols=120  Identities=17%  Similarity=0.317  Sum_probs=79.4

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC--CCc--------------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG--TSR--------------  142 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~--~~~--------------  142 (247)
                      .++||+.+++.+.+.+...       ..|..++|+||+|||||++|+.+++.+..   ...  ..+              
T Consensus        17 ~~vg~~~~~~~L~~~l~~~-------~~~~~~ll~G~~G~GKT~la~~la~~l~~---~~~~~~~~~~~~~~~~~~~~~~   86 (373)
T 1jr3_A           17 DVVGQEHVLTALANGLSLG-------RIHHAYLFSGTRGVGKTSIARLLAKGLNC---ETGITATPCGVCDNCREIEQGR   86 (373)
T ss_dssp             TSCSCHHHHHHHHHHHHHT-------CCCSEEEEESCTTSSHHHHHHHHHHHHSC---TTCSCSSCCSSSHHHHHHHTSC
T ss_pred             hccCcHHHHHHHHHHHHhC-------CCCeEEEEECCCCCCHHHHHHHHHHHhCC---CCCCCCCCCcccHHHHHHhccC
Confidence            4899999999888877642       12336899999999999999999998754   211  011              


Q ss_pred             ---ceeeecccccCCCCChHHHHHHHHHHHHHHHHHh----CCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCc
Q psy1694         143 ---FVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQN  215 (247)
Q Consensus       143 ---~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~----~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~  215 (247)
                         ++.++.     .....+...+    . +...+..    ..+.++||||++.++...++.|++.+++..       .+
T Consensus        87 ~~~~~~~~~-----~~~~~~~~~~----~-l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~-------~~  149 (373)
T 1jr3_A           87 FVDLIEIDA-----ASRTKVEDTR----D-LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-------EH  149 (373)
T ss_dssp             CSSCEEEET-----TCSCCSSCHH----H-HHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCC-------SS
T ss_pred             CCceEEecc-----cccCCHHHHH----H-HHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCC-------Cc
Confidence               111111     1111111111    1 2122222    235899999999999999999999999864       57


Q ss_pred             eEEEEEeCCC
Q psy1694         216 TIFLFLSNSG  225 (247)
Q Consensus       216 ~ifI~tSN~g  225 (247)
                      ++||+++|..
T Consensus       150 ~~~Il~~~~~  159 (373)
T 1jr3_A          150 VKFLLATTDP  159 (373)
T ss_dssp             EEEEEEESCG
T ss_pred             eEEEEEeCCh
Confidence            7888888754

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.18  E-value=6.9e-11  Score=116.18  Aligned_cols=130  Identities=16%  Similarity=0.179  Sum_probs=87.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .|.|.+.+++.|.+.+.-.+..+.     ....|..+||+||||||||++|+++|+.+.        .+|+.++++++..
T Consensus       205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg--------~~~~~v~~~~l~s  276 (806)
T 3cf2_A          205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--------AFFFLINGPEIMS  276 (806)
T ss_dssp             GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT--------CEEEEEEHHHHHS
T ss_pred             hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--------CeEEEEEhHHhhc
Confidence            488999999989888764333222     123567899999999999999999988742        4788998877744


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS  222 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS  222 (247)
                      ...   +.....+...+. ....+..+||||||+|.+.+           .+.+.|+..|+.-.     +..++++|.+|
T Consensus       277 k~~---gese~~lr~lF~-~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~-----~~~~V~VIaaT  347 (806)
T 3cf2_A          277 KLA---GESESNLRKAFE-EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----QRAHVIVMAAT  347 (806)
T ss_dssp             SCT---THHHHHHHHHHH-HHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC-----GGGCEEEEEEC
T ss_pred             ccc---hHHHHHHHHHHH-HHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccc-----ccCCEEEEEec
Confidence            332   222333333332 22344569999999998753           25666777776532     22467888888


Q ss_pred             CCC
Q psy1694         223 NSG  225 (247)
Q Consensus       223 N~g  225 (247)
                      |..
T Consensus       348 N~~  350 (806)
T 3cf2_A          348 NRP  350 (806)
T ss_dssp             SST
T ss_pred             CCh
Confidence            874

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=99.18  E-value=1.1e-10  Score=95.75  Aligned_cols=136  Identities=15%  Similarity=0.169  Sum_probs=73.0

Q ss_pred             cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChH
Q psy1694          80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV  159 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v  159 (247)
                      +++.+.....+.+.+..++........|..++|+||+|||||++|+++++.+..   .+  .+++.++++++....   .
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~---~~--~~~~~~~~~~~~~~~---~   98 (202)
T 2w58_A           27 VDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAK---RN--VSSLIVYVPELFREL---K   98 (202)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHT---TT--CCEEEEEHHHHHHHH---H
T ss_pred             ccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH---cC--CeEEEEEhHHHHHHH---H
Confidence            344333333344444444443321223357899999999999999999998654   32  345555554321000   0


Q ss_pred             HHHHH-HHHHHHHHHHHhCCCeEEEEeCCCCCC--hhhHHHHH-hhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694         160 SLYRL-QLTNWIISNVTACDRAIFIFDEVDKFP--KGLLDVII-PFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT  232 (247)
Q Consensus       160 ~~~~~-~l~~~~~~~l~~~~~~vlilDEiek~~--~~~~~~Ll-~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~  232 (247)
                      ..+.. .+ ..+...+..+  .+|||||++..+  +..+..++ .+++...      ..+..+|+|||...+++.+.
T Consensus        99 ~~~~~~~~-~~~~~~~~~~--~~lilDei~~~~~~~~~~~~ll~~~l~~~~------~~~~~~i~tsn~~~~~l~~~  166 (202)
T 2w58_A           99 HSLQDQTM-NEKLDYIKKV--PVLMLDDLGAEAMSSWVRDDVFGPILQYRM------FENLPTFFTSNFDMQQLAHH  166 (202)
T ss_dssp             HC---CCC-HHHHHHHHHS--SEEEEEEECCC---CCGGGTTHHHHHHHHH------HTTCCEEEEESSCHHHHHHH
T ss_pred             HHhccchH-HHHHHHhcCC--CEEEEcCCCCCcCCHHHHHHHHHHHHHHHH------hCCCCEEEEcCCCHHHHHHH
Confidence            00000 00 1112233443  599999997754  33455344 3554421      13447999999998877654

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=99.18  E-value=1.7e-12  Score=124.34  Aligned_cols=149  Identities=15%  Similarity=0.063  Sum_probs=85.6

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHHHhhhcc---cCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee
Q psy1694          70 RVLEEQLKQHVHGQELAISHICGALKNHFQNR---YHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK  146 (247)
Q Consensus        70 ~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~---~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~  146 (247)
                      ..+.+.+...++||+.+++.+.-++.......   ........++|+||||||||++|+++|+.+..   ...... ...
T Consensus       287 ~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r---~~~~~~-~~~  362 (595)
T 3f9v_A          287 DRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPR---AVYTTG-KGS  362 (595)
T ss_dssp             GTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSC---EECCCT-TCS
T ss_pred             HHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCC---ceecCC-Ccc
Confidence            44667777789999988766644332210000   00122336899999999999999999876421   000000 001


Q ss_pred             ecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc---cc---cCCceEEEE
Q psy1694         147 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN---QI---SFQNTIFLF  220 (247)
Q Consensus       147 ~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~---~~---~~~~~ifI~  220 (247)
                      .++.+.......  .+.+. .....+.+..+.+++++|||+++|+++.++.|+++||++.+..   +.   --.++.+|+
T Consensus       363 ~~~~l~~~~~~~--~~~g~-~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIa  439 (595)
T 3f9v_A          363 TAAGLTAAVVRE--KGTGE-YYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIA  439 (595)
T ss_dssp             TTTTSEEECSSG--GGTSS-CSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEE
T ss_pred             ccccccceeeec--ccccc-ccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEE
Confidence            111111100000  00000 0000123445567999999999999999999999999987541   21   224678999


Q ss_pred             EeCCC
Q psy1694         221 LSNSG  225 (247)
Q Consensus       221 tSN~g  225 (247)
                      |||..
T Consensus       440 atNp~  444 (595)
T 3f9v_A          440 AGNPK  444 (595)
T ss_dssp             EECCT
T ss_pred             EcCCc
Confidence            99964

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.16  E-value=9.9e-11  Score=103.90  Aligned_cols=124  Identities=16%  Similarity=0.152  Sum_probs=76.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCC-----------------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS-----------------  141 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~-----------------  141 (247)
                      .++||+.+++.+.+.+.   ...   +.|. ++|+||+|+|||++++++++.+++   .....                 
T Consensus        15 ~~vg~~~~~~~l~~~~~---~~~---~~~~-~ll~Gp~G~GKTtl~~~la~~l~~---~~~g~i~~~~~~~~~~~~~~~~   84 (354)
T 1sxj_E           15 ALSHNEELTNFLKSLSD---QPR---DLPH-LLLYGPNGTGKKTRCMALLESIFG---PGVYRLKIDVRQFVTASNRKLE   84 (354)
T ss_dssp             GCCSCHHHHHHHHTTTT---CTT---CCCC-EEEECSTTSSHHHHHHTHHHHHSC---TTCCC-----------------
T ss_pred             HhcCCHHHHHHHHHHHh---hCC---CCCe-EEEECCCCCCHHHHHHHHHHHHcC---CCCCeEEecceeecccccccce
Confidence            38899988876655441   111   1333 899999999999999999997665   22110                 


Q ss_pred             -------cceeeecccccCCCCChHHHHHHHHHHHHHHHHH-------------hCCCeEEEEeCCCCCChhhHHHHHhh
Q psy1694         142 -------RFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT-------------ACDRAIFIFDEVDKFPKGLLDVIIPF  201 (247)
Q Consensus       142 -------~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~-------------~~~~~vlilDEiek~~~~~~~~Ll~~  201 (247)
                             +++.++.+.     .+...  .....+.+.....             ..+..++||||++.+++..++.|++.
T Consensus        85 ~~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~  157 (354)
T 1sxj_E           85 LNVVSSPYHLEITPSD-----MGNND--RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRT  157 (354)
T ss_dssp             -CCEECSSEEEECCC---------CC--HHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHH
T ss_pred             eeeecccceEEecHhh-----cCCcc--hHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHH
Confidence                   111111111     00000  0011222211111             22457999999999999999999999


Q ss_pred             cccCcccccccCCceEEEEEeCCCh
Q psy1694         202 IDHHAVYNQISFQNTIFLFLSNSGG  226 (247)
Q Consensus       202 Le~~~~~~~~~~~~~ifI~tSN~g~  226 (247)
                      |++..       .++.||++||...
T Consensus       158 le~~~-------~~~~~Il~t~~~~  175 (354)
T 1sxj_E          158 MEKYS-------KNIRLIMVCDSMS  175 (354)
T ss_dssp             HHHST-------TTEEEEEEESCSC
T ss_pred             HHhhc-------CCCEEEEEeCCHH
Confidence            99864       5678888888644

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=99.16  E-value=7e-12  Score=110.97  Aligned_cols=51  Identities=12%  Similarity=0.201  Sum_probs=38.3

Q ss_pred             hCCCeEEEEeCCCCCChhhHHHHHhhcccCcc--c-cccc---CCceEEEEEeCCCh
Q psy1694         176 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV--Y-NQIS---FQNTIFLFLSNSGG  226 (247)
Q Consensus       176 ~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~--~-~~~~---~~~~ifI~tSN~g~  226 (247)
                      .+.++++||||++++++..++.|+++++++..  . .+..   -.+.++|+|+|...
T Consensus       142 ~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~  198 (350)
T 1g8p_A          142 RANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEE  198 (350)
T ss_dssp             HHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCS
T ss_pred             ecCCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCC
Confidence            34578999999999999999999999998641  1 1111   12678999999643

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.16  E-value=8.8e-11  Score=109.24  Aligned_cols=117  Identities=14%  Similarity=0.197  Sum_probs=70.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCC-----CCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-----GTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g-----~~~~~v~~~~~~l~~  153 (247)
                      .++|++..++.+.+.+.+.  ..      .+++|+||||||||++|+.+|+.+..   ..     ...+++.++++    
T Consensus       181 ~iiGr~~~i~~l~~~l~r~--~~------~~~LL~G~pG~GKT~la~~la~~l~~---~~~p~~l~~~~~~~l~~~----  245 (468)
T 3pxg_A          181 PVIGRSKEIQRVIEVLSRR--TK------NNPVLIGEPGVGKTAIAEGLAQQIIN---NEVPEILRDKRVMTLDMG----  245 (468)
T ss_dssp             CCCCCHHHHHHHHHHHHCS--SS------CEEEEESCTTTTTHHHHHHHHHHHHS---SCSCTTTSSCCEECC-------
T ss_pred             CccCcHHHHHHHHHHHhcc--CC------CCeEEECCCCCCHHHHHHHHHHHHHh---CCCChhhcCCeEEEeeCC----
Confidence            4999999999988877641  12      25799999999999999999999754   22     13456666655    


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  226 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~  226 (247)
                        ..+.+.+...+...+ ..+.....+++|+|    .+.+.++.|+++|+++         +..+|+++|...
T Consensus       246 --~~~~g~~e~~~~~~~-~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g---------~v~vI~at~~~e  302 (468)
T 3pxg_A          246 --TKYRGEFEDRLKKVM-DEIRQAGNIILFID----AAIDASNILKPSLARG---------ELQCIGATTLDE  302 (468)
T ss_dssp             ---------CTTHHHHH-HHHHTCCCCEEEEC----C--------CCCTTSS---------SCEEEEECCTTT
T ss_pred             --ccccchHHHHHHHHH-HHHHhcCCeEEEEe----CchhHHHHHHHhhcCC---------CEEEEecCCHHH
Confidence              111122222223333 34455667899999    5667889999999874         456788877654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.15  E-value=4.2e-11  Score=106.70  Aligned_cols=141  Identities=16%  Similarity=0.150  Sum_probs=83.9

Q ss_pred             hhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhcccc-CCCCCcceeeecccccCCCC
Q psy1694          78 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-DKGTSRFVHKFNSRIHFPNE  156 (247)
Q Consensus        78 ~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~-~g~~~~~v~~~~~~l~~~~~  156 (247)
                      ..++|++..++.+.+.+......    ..+..++|+||||||||++|+.+++.+..... .+...+++.++|.....+. 
T Consensus        19 ~~~~gr~~~~~~l~~~l~~~~~~----~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-   93 (387)
T 2v1u_A           19 DVLPHREAELRRLAEVLAPALRG----EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPY-   93 (387)
T ss_dssp             SCCTTCHHHHHHHHHTTGGGTSS----CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHH-
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHH-
Confidence            35899999999888877654322    23446899999999999999999998643100 0223567788775431100 


Q ss_pred             ChHHH--------------HHHHHHHHHHHHHHhCC-CeEEEEeCCCCCChh--hHHHHHhhcccCcccccccCCceEEE
Q psy1694         157 NHVSL--------------YRLQLTNWIISNVTACD-RAIFIFDEVDKFPKG--LLDVIIPFIDHHAVYNQISFQNTIFL  219 (247)
Q Consensus       157 ~~v~~--------------~~~~l~~~~~~~l~~~~-~~vlilDEiek~~~~--~~~~Ll~~Le~~~~~~~~~~~~~ifI  219 (247)
                      .....              -...+...+...+.... ..+|||||++.++..  .++.|..+++......  .-.+.++|
T Consensus        94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~--~~~~~~~I  171 (387)
T 2v1u_A           94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELG--DRVWVSLV  171 (387)
T ss_dssp             HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-------CEEE
T ss_pred             HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcC--CCceEEEE
Confidence            00000              01112233333443333 469999999999876  6777776665421000  02467888


Q ss_pred             EEeCCC
Q psy1694         220 FLSNSG  225 (247)
Q Consensus       220 ~tSN~g  225 (247)
                      ++||..
T Consensus       172 ~~t~~~  177 (387)
T 2v1u_A          172 GITNSL  177 (387)
T ss_dssp             EECSCS
T ss_pred             EEECCC
Confidence            888865

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=99.14  E-value=9.3e-11  Score=103.35  Aligned_cols=112  Identities=12%  Similarity=0.060  Sum_probs=70.8

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHH----HHHHHHHHhCCCeEE
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT----NWIISNVTACDRAIF  182 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~----~~~~~~l~~~~~~vl  182 (247)
                      +..++|+||||||||++|+++++.+..   .  ..+++.+++..+.       ..+.+.+.    ..+.....  ..+++
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~---~--~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~vL  102 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKK---R--GYRVIYSSADDFA-------QAMVEHLKKGTINEFRNMYK--SVDLL  102 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHH---T--TCCEEEEEHHHHH-------HHHHHHHHHTCHHHHHHHHH--TCSEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHH---C--CCEEEEEEHHHHH-------HHHHHHHHcCcHHHHHHHhc--CCCEE
Confidence            336799999999999999999998754   3  3467777765531       11222111    11222222  35899


Q ss_pred             EEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChH---HHHHHHHHHHH
Q psy1694         183 IFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT---EIMNTFLELRK  238 (247)
Q Consensus       183 ilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~---~i~~~~~~~~~  238 (247)
                      ||||++.++.  ..++.++.+++...     + .+..+|+++|....   .+...+.....
T Consensus       103 ~iDEi~~l~~~~~~~~~l~~~l~~~~-----~-~~~~iii~~~~~~~~l~~l~~~L~sR~~  157 (324)
T 1l8q_A          103 LLDDVQFLSGKERTQIEFFHIFNTLY-----L-LEKQIILASDRHPQKLDGVSDRLVSRFE  157 (324)
T ss_dssp             EEECGGGGTTCHHHHHHHHHHHHHHH-----H-TTCEEEEEESSCGGGCTTSCHHHHHHHH
T ss_pred             EEcCcccccCChHHHHHHHHHHHHHH-----H-CCCeEEEEecCChHHHHHhhhHhhhccc
Confidence            9999999986  67888887776421     1 23357777776655   35555555443

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=99.13  E-value=9.8e-11  Score=108.15  Aligned_cols=140  Identities=11%  Similarity=0.091  Sum_probs=84.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .+.|++...  ...++...+..+.   ++..++|+||||+|||++|+++++.+..   .....+++.+++..+       
T Consensus       107 fv~g~~n~~--a~~~~~~~a~~~~---~~~~lll~Gp~G~GKTtLa~aia~~l~~---~~~~~~v~~v~~~~~-------  171 (440)
T 2z4s_A          107 FVVGPGNSF--AYHAALEVAKHPG---RYNPLFIYGGVGLGKTHLLQSIGNYVVQ---NEPDLRVMYITSEKF-------  171 (440)
T ss_dssp             CCCCTTTHH--HHHHHHHHHHSTT---SSCCEEEECSSSSSHHHHHHHHHHHHHH---HCCSSCEEEEEHHHH-------
T ss_pred             cCCCCchHH--HHHHHHHHHhCCC---CCCeEEEECCCCCCHHHHHHHHHHHHHH---hCCCCeEEEeeHHHH-------
Confidence            355755433  2233444444332   2446899999999999999999998754   322346677766543       


Q ss_pred             HHHHHHHHHH----HHHHHHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHH---H
Q psy1694         159 VSLYRLQLTN----WIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE---I  229 (247)
Q Consensus       159 v~~~~~~l~~----~~~~~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~---i  229 (247)
                      ...+.+.+..    .+..... ...+++||||++.++.  ..++.++..++...     + .+..+|++||.....   +
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-----~-~~~~iIitt~~~~~~l~~l  244 (440)
T 2z4s_A          172 LNDLVDSMKEGKLNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELH-----D-SGKQIVICSDREPQKLSEF  244 (440)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-----T-TTCEEEEEESSCGGGCSSC
T ss_pred             HHHHHHHHHcccHHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHH-----H-CCCeEEEEECCCHHHHHHH
Confidence            1112222211    1111111 1568999999999986  68888888876521     1 234577788876665   5


Q ss_pred             HHHHHHHHHcC
Q psy1694         230 MNTFLELRKSG  240 (247)
Q Consensus       230 ~~~~~~~~~~g  240 (247)
                      ...+......|
T Consensus       245 ~~~L~sR~~~g  255 (440)
T 2z4s_A          245 QDRLVSRFQMG  255 (440)
T ss_dssp             CHHHHHHHHSS
T ss_pred             HHHHHhhccCC
Confidence            55666655544

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.13  E-value=1.5e-10  Score=108.93  Aligned_cols=114  Identities=19%  Similarity=0.270  Sum_probs=73.2

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc----CC-----CCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY----HN-----TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS  149 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~----~~-----~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~  149 (247)
                      .++|++.+++.+.+.+..+.....    .+     ..+..++|+||||||||++|+++|+.+ +       .+++.++++
T Consensus        40 dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-~-------~~~i~in~s  111 (516)
T 1sxj_A           40 QVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-G-------YDILEQNAS  111 (516)
T ss_dssp             GCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-T-------CEEEEECTT
T ss_pred             HhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-C-------CCEEEEeCC
Confidence            499999999999999887542210    00     123478999999999999999999985 2       367777775


Q ss_pred             cccCCCCChHHHHHHHHHHH-----HHHHH--------HhCCCeEEEEeCCCCCChhh---HHHHHhhcccC
Q psy1694         150 RIHFPNENHVSLYRLQLTNW-----IISNV--------TACDRAIFIFDEVDKFPKGL---LDVIIPFIDHH  205 (247)
Q Consensus       150 ~l~~~~~~~v~~~~~~l~~~-----~~~~l--------~~~~~~vlilDEiek~~~~~---~~~Ll~~Le~~  205 (247)
                      .....     ......+...     +.+.+        ......+|||||+|.++...   .+.|++++++.
T Consensus       112 ~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~  178 (516)
T 1sxj_A          112 DVRSK-----TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT  178 (516)
T ss_dssp             SCCCH-----HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC
T ss_pred             CcchH-----HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc
Confidence            53210     0000000000     00001        12456899999999998754   47888888874

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.11  E-value=8.2e-10  Score=103.50  Aligned_cols=126  Identities=17%  Similarity=0.153  Sum_probs=83.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .+.|++.+++.+.+.+..+. .+.     ....|..++|+||||||||++|++|+..+.        .+|+.++++.+..
T Consensus        32 dv~G~~~~k~~l~~lv~~l~-~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~--------~~~i~i~g~~~~~  102 (499)
T 2dhr_A           32 DVAGAEEAKEELKEIVEFLK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--------VPFITASGSDFVE  102 (499)
T ss_dssp             SSCSCHHHHHHHHHHHHHHH-CGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT--------CCEEEEEGGGGTS
T ss_pred             HcCCcHHHHHHHHHHHHHhh-chhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--------CCEEEEehhHHHH
Confidence            48999999999888766432 211     112345689999999999999999988742        4789998877632


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCC---CeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCce
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACD---RAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNT  216 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~---~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~  216 (247)
                      ..   ++..    ...+...++.+.   .+++|+||++.++.              ..++.++..|+.+.     .-+..
T Consensus       103 ~~---~g~~----~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-----~~~~v  170 (499)
T 2dhr_A          103 MF---VGVG----AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----KDTAI  170 (499)
T ss_dssp             SC---TTHH----HHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-----SSCCC
T ss_pred             hh---hhhH----HHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc-----cCccE
Confidence            22   2211    233444455543   38999999988753              24566776666543     12456


Q ss_pred             EEEEEeCCC
Q psy1694         217 IFLFLSNSG  225 (247)
Q Consensus       217 ifI~tSN~g  225 (247)
                      ++|.++|..
T Consensus       171 iviAatn~p  179 (499)
T 2dhr_A          171 VVMAATNRP  179 (499)
T ss_dssp             EEEECCSCG
T ss_pred             EEEEecCCh
Confidence            777777765

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.10  E-value=8.4e-10  Score=88.97  Aligned_cols=104  Identities=12%  Similarity=0.164  Sum_probs=64.1

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHH----HHHHHHHhCCCeEE
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTN----WIISNVTACDRAIF  182 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~----~~~~~l~~~~~~vl  182 (247)
                      +..++|+||+|+|||+++++++..+...  .|.  ..+.+++.++       ...+......    .....+.  ...++
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~--~g~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~ll  104 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIYEK--KGI--RGYFFDTKDL-------IFRLKHLMDEGKDTKFLKTVL--NSPVL  104 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHHHH--SCC--CCCEEEHHHH-------HHHHHHHHHHTCCSHHHHHHH--TCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHH--cCC--eEEEEEHHHH-------HHHHHHHhcCchHHHHHHHhc--CCCEE
Confidence            3468999999999999999999987521  332  2333333222       1111110000    1112222  34799


Q ss_pred             EEeCCC--CCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHH
Q psy1694         183 IFDEVD--KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEI  229 (247)
Q Consensus       183 ilDEie--k~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i  229 (247)
                      +|||++  .+++..+..+..++++...      .+..+|+|||...+++
T Consensus       105 ilDE~~~~~~~~~~~~~l~~ll~~~~~------~~~~ii~tsn~~~~~~  147 (180)
T 3ec2_A          105 VLDDLGSERLSDWQRELISYIITYRYN------NLKSTIITTNYSLQRE  147 (180)
T ss_dssp             EEETCSSSCCCHHHHHHHHHHHHHHHH------TTCEEEEECCCCSCC-
T ss_pred             EEeCCCCCcCCHHHHHHHHHHHHHHHH------cCCCEEEEcCCChhHh
Confidence            999998  5678788888888876320      3457899999987763

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.04  E-value=7.1e-10  Score=106.17  Aligned_cols=63  Identities=5%  Similarity=0.117  Sum_probs=44.4

Q ss_pred             HHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc-c-------------cCCceEEEEEeCCCh-HHHHHHHHH
Q psy1694         173 NVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ-I-------------SFQNTIFLFLSNSGG-TEIMNTFLE  235 (247)
Q Consensus       173 ~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~-~-------------~~~~~ifI~tSN~g~-~~i~~~~~~  235 (247)
                      .+..+.++++||||++.+++.+|+.|+++|+++.+... .             --.++.+|+++|... +.+...+.+
T Consensus       196 ~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~~  273 (604)
T 3k1j_A          196 MIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRS  273 (604)
T ss_dssp             HHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHHH
T ss_pred             eeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHHHHH
Confidence            44566778999999999999999999999998764321 0             012567999998642 234444444

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.03  E-value=2.8e-10  Score=111.93  Aligned_cols=145  Identities=14%  Similarity=0.189  Sum_probs=90.8

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .+.|.+.+++.+.+.+.-....+.     ....|..+||+||||||||++|+++|..+-        .+|+.+..+++..
T Consensus       478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~--------~~f~~v~~~~l~s  549 (806)
T 3cf2_A          478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--------ANFISIKGPELLT  549 (806)
T ss_dssp             TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT--------CEEEECCHHHHHT
T ss_pred             HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC--------CceEEeccchhhc
Confidence            367888888888877653222211     123455789999999999999999988842        4888888776643


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCceEEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFL  219 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI  219 (247)
                      ...+.   -...+...+ ..-+....+||||||+|.+-+              .+.+.||..||.-.     ...+.++|
T Consensus       550 ~~vGe---se~~vr~lF-~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~-----~~~~V~vi  620 (806)
T 3cf2_A          550 MWFGE---SEANVREIF-DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----TKKNVFII  620 (806)
T ss_dssp             TTCSS---CHHHHHHHH-HHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC-----SSSSEEEE
T ss_pred             cccch---HHHHHHHHH-HHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC-----CCCCEEEE
Confidence            32221   122223223 223444569999999998732              24677888887532     12467788


Q ss_pred             EEeCCChHHHHHHHHHHHHcCcccc
Q psy1694         220 FLSNSGGTEIMNTFLELRKSGERYI  244 (247)
Q Consensus       220 ~tSN~g~~~i~~~~~~~~~~g~~Re  244 (247)
                      .+||.. +.|..   ..++.||+..
T Consensus       621 ~aTN~p-~~lD~---AllRpgRfd~  641 (806)
T 3cf2_A          621 GATNRP-DIIDP---AILRPGRLDQ  641 (806)
T ss_dssp             CC-CCS-SSSCH---HHHSTTTSCC
T ss_pred             EeCCCc-hhCCH---hHcCCCcceE
Confidence            888876 33443   3456677644

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.03  E-value=8.9e-10  Score=109.39  Aligned_cols=124  Identities=17%  Similarity=0.176  Sum_probs=69.4

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~  153 (247)
                      .++|++..++.+.+.+.+.        .+.+++|+||||||||++|+.+|+.+..   ...     ..+++.++++.+..
T Consensus       171 ~viGr~~~i~~l~~~l~~~--------~~~~vlL~G~pG~GKT~la~~la~~l~~---~~~p~~l~~~~~~~l~~~~l~~  239 (854)
T 1qvr_A          171 PVIGRDEEIRRVIQILLRR--------TKNNPVLIGEPGVGKTAIVEGLAQRIVK---GDVPEGLKGKRIVSLQMGSLLA  239 (854)
T ss_dssp             CCCSCHHHHHHHHHHHHCS--------SCCCCEEEECTTSCHHHHHHHHHHHHHH---TCSCTTSTTCEEEEECC-----
T ss_pred             ccCCcHHHHHHHHHHHhcC--------CCCceEEEcCCCCCHHHHHHHHHHHHhc---CCCchhhcCCeEEEeehHHhhc
Confidence            4899999888888777531        1224689999999999999999998744   211     34567777665532


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCCC--------hhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTAC-DRAIFIFDEVDKFP--------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~-~~~vlilDEiek~~--------~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      . ..+.+.+...+...+. .+... ...++||||++.+.        .++++.|+++++.+.         ..+|+++|.
T Consensus       240 g-~~~~g~~~~~l~~~~~-~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~---------i~~I~at~~  308 (854)
T 1qvr_A          240 G-AKYRGEFEERLKAVIQ-EVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGE---------LRLIGATTL  308 (854)
T ss_dssp             -------CHHHHHHHHHH-HHHTTCSSEEEEECCC-------------------HHHHHTTC---------CCEEEEECH
T ss_pred             c-CccchHHHHHHHHHHH-HHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCC---------eEEEEecCc
Confidence            1 1122234444444443 23333 45799999999997        566788999987743         346666654

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.02  E-value=7.6e-10  Score=108.33  Aligned_cols=124  Identities=11%  Similarity=0.129  Sum_probs=79.3

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~  153 (247)
                      .++|++..++.+.+.+.+.        .+..++|+||||||||++|+.+++.+..   ...     ..+++..+++.+..
T Consensus       187 ~~iGr~~~i~~l~~~l~~~--------~~~~vlL~G~~GtGKT~la~~la~~l~~---~~v~~~~~~~~~~~~~~~~l~~  255 (758)
T 1r6b_X          187 PLIGREKELERAIQVLCRR--------RKNNPLLVGESGVGKTAIAEGLAWRIVQ---GDVPEVMADCTIYSLDIGSLLA  255 (758)
T ss_dssp             CCCSCHHHHHHHHHHHTSS--------SSCEEEEECCTTSSHHHHHHHHHHHHHH---TCSCGGGTTCEEEECCCC---C
T ss_pred             CccCCHHHHHHHHHHHhcc--------CCCCeEEEcCCCCCHHHHHHHHHHHHHh---CCCChhhcCCEEEEEcHHHHhc
Confidence            5899999998888776532        2236799999999999999999998754   221     22344444444322


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC---------ChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~---------~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      .. .+.+.+...+...+ ..+..+..+++||||++.+         ..+.++.|+++++.+         +..+|+++|.
T Consensus       256 ~~-~~~g~~e~~l~~~~-~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~---------~~~~I~at~~  324 (758)
T 1r6b_X          256 GT-KYRGDFEKRFKALL-KQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG---------KIRVIGSTTY  324 (758)
T ss_dssp             CC-CCSSCHHHHHHHHH-HHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSC---------CCEEEEEECH
T ss_pred             cc-cccchHHHHHHHHH-HHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCC---------CeEEEEEeCc
Confidence            11 22233444444444 3445556799999999998         345677788888764         3455666553

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.02  E-value=5.6e-09  Score=90.48  Aligned_cols=144  Identities=15%  Similarity=0.164  Sum_probs=82.2

Q ss_pred             cCChHHHHHHHHHHHHHhhhcc-----cCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          80 VHGQELAISHICGALKNHFQNR-----YHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~-----~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      +.|.+.+++.+.+.+......+     ..-..|..++|+||||||||++++++|..+ .       .+++.++...+...
T Consensus        12 i~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~-~-------~~~i~i~g~~l~~~   83 (274)
T 2x8a_A           12 IGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES-G-------LNFISVKGPELLNM   83 (274)
T ss_dssp             CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT-T-------CEEEEEETTTTCSS
T ss_pred             hCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc-C-------CCEEEEEcHHHHhh
Confidence            7777888877776653221111     112233458999999999999999998873 2       15777776554221


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-----------hhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694         155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  223 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~-----------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN  223 (247)
                         +.+.....+.... ........+++++||++.+..           ...+.++..|+.+.     .-+..+++.++|
T Consensus        84 ---~~~~~~~~i~~vf-~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~-----~~~~~i~ia~tn  154 (274)
T 2x8a_A           84 ---YVGESERAVRQVF-QRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE-----ARQQVFIMAATN  154 (274)
T ss_dssp             ---TTHHHHHHHHHHH-HHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC-----STTCEEEEEEES
T ss_pred             ---hhhHHHHHHHHHH-HHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc-----ccCCEEEEeecC
Confidence               2222222222222 222234558999999998632           34555666666542     235567777777


Q ss_pred             CChHHHHHHHHHHHHcCcccc
Q psy1694         224 SGGTEIMNTFLELRKSGERYI  244 (247)
Q Consensus       224 ~g~~~i~~~~~~~~~~g~~Re  244 (247)
                      .. +.+..   ..++.||+..
T Consensus       155 ~p-~~LD~---al~r~gRfd~  171 (274)
T 2x8a_A          155 RP-DIIDP---AILRPGRLDK  171 (274)
T ss_dssp             CG-GGSCH---HHHSTTSSCE
T ss_pred             Ch-hhCCH---hhcCcccCCe
Confidence            64 33322   2345566543

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.00  E-value=7.4e-10  Score=108.53  Aligned_cols=117  Identities=14%  Similarity=0.181  Sum_probs=69.9

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~  153 (247)
                      .++|++..++.+.+.+.+.        .+.+++|+||||||||++|+.+|+.+..   ...     ..+++.+++     
T Consensus       181 ~iiG~~~~i~~l~~~l~~~--------~~~~vLL~G~pGtGKT~la~~la~~l~~---~~~p~~l~~~~~~~~~~-----  244 (758)
T 3pxi_A          181 PVIGRSKEIQRVIEVLSRR--------TKNNPVLIGEPGVGKTAIAEGLAQQIIN---NEVPEILRDKRVMTLDM-----  244 (758)
T ss_dssp             CCCCCHHHHHHHHHHHHCS--------SSCEEEEESCTTTTTHHHHHHHHHHHHS---SCSCTTTSSCCEECC-------
T ss_pred             CccCchHHHHHHHHHHhCC--------CCCCeEEECCCCCCHHHHHHHHHHHHhc---CCCChhhcCCeEEEecc-----
Confidence            4999999999998877641        2225799999999999999999999754   221     233444443     


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  226 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~  226 (247)
                       ...+.+.++..+...+ +.+.....+++|||    .+.+.++.|++.|+++         +..+|+++|...
T Consensus       245 -g~~~~G~~e~~l~~~~-~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~~---------~v~~I~at~~~~  302 (758)
T 3pxi_A          245 -GTKYRGEFEDRLKKVM-DEIRQAGNIILFID----AAIDASNILKPSLARG---------ELQCIGATTLDE  302 (758)
T ss_dssp             ---------CTTHHHHH-HHHHTCCCCEEEEC----C--------CCCTTSS---------SCEEEEECCTTT
T ss_pred             -cccccchHHHHHHHHH-HHHHhcCCEEEEEc----CchhHHHHHHHHHhcC---------CEEEEeCCChHH
Confidence             1111222222333333 33455667999999    5667899999999864         457888887654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.98  E-value=9.3e-10  Score=97.79  Aligned_cols=134  Identities=21%  Similarity=0.266  Sum_probs=82.1

Q ss_pred             hhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-CCcceeeecccccC---
Q psy1694          78 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVHKFNSRIHF---  153 (247)
Q Consensus        78 ~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-~~~~v~~~~~~l~~---  153 (247)
                      ..++|++..++.+.+.+.......    .+..++++||+|||||++++.+++.+..   ... ..+++.++|.....   
T Consensus        20 ~~~~gr~~e~~~l~~~l~~~~~~~----~~~~vli~G~~G~GKTtl~~~l~~~~~~---~~~~~~~~~~i~~~~~~~~~~   92 (386)
T 2qby_A           20 DELPHREDQIRKIASILAPLYREE----KPNNIFIYGLTGTGKTAVVKFVLSKLHK---KFLGKFKHVYINTRQIDTPYR   92 (386)
T ss_dssp             SCCTTCHHHHHHHHHSSGGGGGTC----CCCCEEEEECTTSSHHHHHHHHHHHHHH---HTCSSCEEEEEEHHHHCSHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCC----CCCeEEEECCCCCCHHHHHHHHHHHHHH---HhcCCceEEEEECCCCCCHHH
Confidence            358999999988887776543221    3446899999999999999999988643   211 24567776543210   


Q ss_pred             -----------CCCChHHHHHHHHHHHHHHHHHhCC-CeEEEEeCCCCCC----hhhHHHHHhhcccCcccccccCCceE
Q psy1694         154 -----------PNENHVSLYRLQLTNWIISNVTACD-RAIFIFDEVDKFP----KGLLDVIIPFIDHHAVYNQISFQNTI  217 (247)
Q Consensus       154 -----------~~~~~v~~~~~~l~~~~~~~l~~~~-~~vlilDEiek~~----~~~~~~Ll~~Le~~~~~~~~~~~~~i  217 (247)
                                 +.+.. +.-...+...+...+.... ..+|+|||++.+.    ...+..|++.+++.      .-.+..
T Consensus        93 ~~~~i~~~l~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~------~~~~~~  165 (386)
T 2qby_A           93 VLADLLESLDVKVPFT-GLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV------NKSKIS  165 (386)
T ss_dssp             HHHHHTTTTSCCCCSS-SCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC------CC--EE
T ss_pred             HHHHHHHHhCCCCCCC-CCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc------CCCeEE
Confidence                       00000 0001122233434444443 5799999999885    56777787777642      114667


Q ss_pred             EEEEeCCC
Q psy1694         218 FLFLSNSG  225 (247)
Q Consensus       218 fI~tSN~g  225 (247)
                      +|+++|..
T Consensus       166 ~I~~~~~~  173 (386)
T 2qby_A          166 FIGITNDV  173 (386)
T ss_dssp             EEEEESCG
T ss_pred             EEEEECCC
Confidence            88888754

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=98.97  E-value=7.4e-10  Score=97.63  Aligned_cols=126  Identities=14%  Similarity=0.157  Sum_probs=66.1

Q ss_pred             HHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh-ccccCCCCCcceeeecccccCCCCChHHHHHHHHHH
Q psy1694          90 ICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF-KRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTN  168 (247)
Q Consensus        90 l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~-~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~  168 (247)
                      +.+.+..++.... +..+..++|+||||||||++|+++++.+. .   .+.  +++.++++.+.........  .+.+. 
T Consensus       136 ~~~~~~~~i~~~~-~~~~~~lll~G~~GtGKT~La~aia~~~~~~---~g~--~v~~~~~~~l~~~l~~~~~--~~~~~-  206 (308)
T 2qgz_A          136 AFSAILDFVEQYP-SAEQKGLYLYGDMGIGKSYLLAAMAHELSEK---KGV--STTLLHFPSFAIDVKNAIS--NGSVK-  206 (308)
T ss_dssp             HHHHHHHHHHHCS-CSSCCEEEEECSTTSSHHHHHHHHHHHHHHH---SCC--CEEEEEHHHHHHHHHCCCC------C-
T ss_pred             HHHHHHHHHHhcc-ccCCceEEEECCCCCCHHHHHHHHHHHHHHh---cCC--cEEEEEHHHHHHHHHHHhc--cchHH-
Confidence            3344444544322 11234789999999999999999999876 5   432  3344444322100000000  00000 


Q ss_pred             HHHHHHHhCCCeEEEEeCCCCCC--hhhHHHHHh-hcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694         169 WIISNVTACDRAIFIFDEVDKFP--KGLLDVIIP-FIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT  232 (247)
Q Consensus       169 ~~~~~l~~~~~~vlilDEiek~~--~~~~~~Ll~-~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~  232 (247)
                      .....+..  .++|||||++..+  +..++.|+. +++.+.      ..+..+|+|||...+++.+.
T Consensus       207 ~~~~~~~~--~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~------~~~~~~IitSN~~~~~l~~~  265 (308)
T 2qgz_A          207 EEIDAVKN--VPVLILDDIGAEQATSWVRDEVLQVILQYRM------LEELPTFFTSNYSFADLERK  265 (308)
T ss_dssp             CTTHHHHT--SSEEEEETCCC------CTTTTHHHHHHHHH------HHTCCEEEEESSCHHHHHTT
T ss_pred             HHHHHhcC--CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHH------HCCCcEEEECCCCHHHHHHH
Confidence            11122333  3699999996654  344443433 555421      12447999999998887654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.96  E-value=1.3e-09  Score=90.58  Aligned_cols=95  Identities=12%  Similarity=0.053  Sum_probs=62.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  188 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie  188 (247)
                      .++|+||||||||++|+.+++.+..   .+  .+++.++++.+.......           + ..+  ....++||||++
T Consensus        54 ~~ll~G~~G~GKT~la~~l~~~~~~---~~--~~~~~~~~~~~~~~~~~~-----------~-~~~--~~~~vliiDe~~  114 (242)
T 3bos_A           54 AIYLWGPVKSGRTHLIHAACARANE---LE--RRSFYIPLGIHASISTAL-----------L-EGL--EQFDLICIDDVD  114 (242)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH---TT--CCEEEEEGGGGGGSCGGG-----------G-TTG--GGSSEEEEETGG
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHH---cC--CeEEEEEHHHHHHHHHHH-----------H-Hhc--cCCCEEEEeccc
Confidence            6899999999999999999998755   32  355666665542211111           1 011  235799999999


Q ss_pred             CCChhh--HHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694         189 KFPKGL--LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  227 (247)
Q Consensus       189 k~~~~~--~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~  227 (247)
                      .++...  ++.|+.+++...     +..+..+|++||...+
T Consensus       115 ~~~~~~~~~~~l~~~l~~~~-----~~~~~~ii~~~~~~~~  150 (242)
T 3bos_A          115 AVAGHPLWEEAIFDLYNRVA-----EQKRGSLIVSASASPM  150 (242)
T ss_dssp             GGTTCHHHHHHHHHHHHHHH-----HHCSCEEEEEESSCTT
T ss_pred             cccCCHHHHHHHHHHHHHHH-----HcCCCeEEEEcCCCHH
Confidence            998766  888888876532     1122247788876553

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.93  E-value=5.4e-09  Score=88.76  Aligned_cols=130  Identities=15%  Similarity=0.138  Sum_probs=74.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhh----cccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          79 HVHGQELAISHICGALKNHFQ----NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~----~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      .++|++.++..+.+....+..    .......|..++|+||||||||+++++++..+.        .+++.++...+...
T Consensus        17 ~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~--------~~~i~~~~~~~~~~   88 (254)
T 1ixz_A           17 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--------VPFITASGSDFVEM   88 (254)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT--------CCEEEEEHHHHHHS
T ss_pred             HhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--------CCEEEeeHHHHHHH
Confidence            388888888877766553311    011112344589999999999999999988742        36777775443211


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCceEEEE
Q psy1694         155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFLF  220 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~  220 (247)
                      ..+.   ....+...+ +.......+++++||++.+..              ..++.++..|+.+.     .-+..+++.
T Consensus        89 ~~~~---~~~~i~~~~-~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~-----~~~~~i~~a  159 (254)
T 1ixz_A           89 FVGV---GAARVRDLF-ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----KDTAIVVMA  159 (254)
T ss_dssp             CTTH---HHHHHHHHH-HHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC-----TTCCEEEEE
T ss_pred             HhhH---HHHHHHHHH-HHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC-----CCCCEEEEE
Confidence            1111   111111112 222223458999999976532              23556666666543     123456667


Q ss_pred             EeCCC
Q psy1694         221 LSNSG  225 (247)
Q Consensus       221 tSN~g  225 (247)
                      ++|..
T Consensus       160 ~t~~p  164 (254)
T 1ixz_A          160 ATNRP  164 (254)
T ss_dssp             EESCG
T ss_pred             ccCCc
Confidence            77653

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.88  E-value=1.3e-08  Score=87.83  Aligned_cols=130  Identities=15%  Similarity=0.133  Sum_probs=74.7

Q ss_pred             hcCChHHHHHHHHHHHHHhhhc----ccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          79 HVHGQELAISHICGALKNHFQN----RYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~----~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      .++|++.+++.+.+....+...    ..+...|..++|+||||||||+++++++..+.        .+++.+++..+...
T Consensus        41 ~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~--------~~~i~~~~~~~~~~  112 (278)
T 1iy2_A           41 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--------VPFITASGSDFVEM  112 (278)
T ss_dssp             GSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT--------CCEEEEEHHHHHHS
T ss_pred             HhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC--------CCEEEecHHHHHHH
Confidence            4889998888887766543210    11112333589999999999999999988742        36777776543211


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCceEEEE
Q psy1694         155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFLF  220 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI~  220 (247)
                      ..+.   ....+...+ +.......+++++||++.++.              ...+.++..|+.+.     .-+..+++.
T Consensus       113 ~~~~---~~~~i~~~~-~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~-----~~~~~i~~a  183 (278)
T 1iy2_A          113 FVGV---GAARVRDLF-ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----KDTAIVVMA  183 (278)
T ss_dssp             TTTH---HHHHHHHHH-HHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC-----TTCCEEEEE
T ss_pred             HhhH---HHHHHHHHH-HHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC-----CCCCEEEEE
Confidence            1111   111122222 222233458999999976531              22344444454432     224567777


Q ss_pred             EeCCC
Q psy1694         221 LSNSG  225 (247)
Q Consensus       221 tSN~g  225 (247)
                      ++|..
T Consensus       184 ~t~~p  188 (278)
T 1iy2_A          184 ATNRP  188 (278)
T ss_dssp             EESCT
T ss_pred             ecCCc
Confidence            77764

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=98.84  E-value=1.1e-09  Score=101.50  Aligned_cols=134  Identities=14%  Similarity=0.127  Sum_probs=84.3

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHH-HHHhhccccCCCCCcceeeec
Q psy1694          70 RVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFI-VSSIFKRYKDKGTSRFVHKFN  148 (247)
Q Consensus        70 ~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~l-a~~l~~~~~~g~~~~~v~~~~  148 (247)
                      +.+.+.+.. ++||+.++..+.-++...   ........++|+.|+||| ||.+|+.+ ++.+ +   .   ..|+....
T Consensus       206 ~~l~~sIap-I~G~e~vK~aLll~L~GG---~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~-p---R---~~ft~g~~  273 (506)
T 3f8t_A          206 TTFARAIAP-LPGAEEVGKMLALQLFSC---VGKNSERLHVLLAGYPVV-CSEILHHVLDHLA-P---R---GVYVDLRR  273 (506)
T ss_dssp             HHHHHHHCC-STTCHHHHHHHHHHHTTC---CSSGGGCCCEEEESCHHH-HHHHHHHHHHHTC-S---S---EEEEEGGG
T ss_pred             HHHHHHhcc-cCCCHHHHHHHHHHHcCC---ccccCCceeEEEECCCCh-HHHHHHHHHHHhC-C---C---eEEecCCC
Confidence            456677777 999998776665444321   100111226899999999 99999999 6653 3   1   12221111


Q ss_pred             cc-------ccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc-cc-CCceEEE
Q psy1694         149 SR-------IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ-IS-FQNTIFL  219 (247)
Q Consensus       149 ~~-------l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~-~~-~~~~ifI  219 (247)
                      +.       ...+ .+ .. +       -.|.+..+.++++++||+++|++..|.+|+++||+++++.. .. -.++.+|
T Consensus       274 ss~~gLt~s~r~~-tG-~~-~-------~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VI  343 (506)
T 3f8t_A          274 TELTDLTAVLKED-RG-WA-L-------RAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVL  343 (506)
T ss_dssp             CCHHHHSEEEEES-SS-EE-E-------EECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEE
T ss_pred             CCccCceEEEEcC-CC-cc-c-------CCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEE
Confidence            10       1111 11 00 0       11456667889999999999999999999999999875432 21 1356788


Q ss_pred             EEeCCC
Q psy1694         220 FLSNSG  225 (247)
Q Consensus       220 ~tSN~g  225 (247)
                      .|+|--
T Consensus       344 AA~NP~  349 (506)
T 3f8t_A          344 AAINPG  349 (506)
T ss_dssp             EEECCC
T ss_pred             EEeCcc
Confidence            888864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.78  E-value=1.1e-08  Score=80.69  Aligned_cols=103  Identities=11%  Similarity=0.122  Sum_probs=67.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  188 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie  188 (247)
                      .+.|+||+|+|||+++++++..+..   .|  .+.+.++...+...                 ..+.  ...+++|||++
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~~~---~g--~~~~~~~~~~~~~~-----------------~~~~--~~~lLilDE~~   93 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQALE---AG--KNAAYIDAASMPLT-----------------DAAF--EAEYLAVDQVE   93 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHHHT---TT--CCEEEEETTTSCCC-----------------GGGG--GCSEEEEESTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh---cC--CcEEEEcHHHhhHH-----------------HHHh--CCCEEEEeCcc
Confidence            5788999999999999999998654   33  23444444333111                 0011  24799999999


Q ss_pred             CCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHH--HHHHHHHHcC
Q psy1694         189 KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM--NTFLELRKSG  240 (247)
Q Consensus       189 k~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~--~~~~~~~~~g  240 (247)
                      .+++..+..|..+++...     +-.++++|+|||..++++.  +.+.+.+..|
T Consensus        94 ~~~~~~~~~l~~li~~~~-----~~g~~~iiits~~~p~~l~~~~~L~SRl~~g  142 (149)
T 2kjq_A           94 KLGNEEQALLFSIFNRFR-----NSGKGFLLLGSEYTPQQLVIREDLRTRMAYC  142 (149)
T ss_dssp             CCCSHHHHHHHHHHHHHH-----HHTCCEEEEEESSCTTTSSCCHHHHHHGGGS
T ss_pred             ccChHHHHHHHHHHHHHH-----HcCCcEEEEECCCCHHHccccHHHHHHHhcC
Confidence            998877888888877532     1123347889998776543  4445554444

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.78  E-value=4.7e-08  Score=86.69  Aligned_cols=104  Identities=16%  Similarity=0.233  Sum_probs=66.3

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      ..+||..+.+.+...+.......   ..|-.++|+||||+|||++|++++..+..        ++.....+.+     ..
T Consensus        26 ~~~g~~~~~~~l~~~i~~~~~~~---~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~--------~~~~~sg~~~-----~~   89 (334)
T 1in4_A           26 EFIGQENVKKKLSLALEAAKMRG---EVLDHVLLAGPPGLGKTTLAHIIASELQT--------NIHVTSGPVL-----VK   89 (334)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHHHT---CCCCCEEEESSTTSSHHHHHHHHHHHHTC--------CEEEEETTTC-----CS
T ss_pred             HccCcHHHHHHHHHHHHHHHhcC---CCCCeEEEECCCCCcHHHHHHHHHHHhCC--------CEEEEechHh-----cC
Confidence            37899888888777766432111   12235899999999999999999998632        2222211111     11


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694         159 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHH  205 (247)
Q Consensus       159 v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~  205 (247)
                      .+    .+.... .  ......++++||++.+++..++.|++.++.+
T Consensus        90 ~~----~l~~~~-~--~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~  129 (334)
T 1in4_A           90 QG----DMAAIL-T--SLERGDVLFIDEIHRLNKAVEELLYSAIEDF  129 (334)
T ss_dssp             HH----HHHHHH-H--HCCTTCEEEEETGGGCCHHHHHHHHHHHHTS
T ss_pred             HH----HHHHHH-H--HccCCCEEEEcchhhcCHHHHHHHHHHHHhc
Confidence            11    111111 1  1234689999999999998999998888764

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=98.57  E-value=2.1e-07  Score=83.58  Aligned_cols=141  Identities=12%  Similarity=0.106  Sum_probs=80.5

Q ss_pred             hhcCChHHHHHHHHHHH-HHhhhcccCCCCCeEEEE--eecCCChHHHHHHHHHHHhhccc-cCCCCCcceeeecccccC
Q psy1694          78 QHVHGQELAISHICGAL-KNHFQNRYHNTKALAISL--HGLPGTGKNYVTDFIVSSIFKRY-KDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        78 ~~l~Gq~~a~~~l~~~l-~~~~~~~~~~~kpl~lll--~G~~GtGKt~~A~~la~~l~~~~-~~g~~~~~v~~~~~~l~~  153 (247)
                      ..++|.+..++.+.+.+ .......  ...+..+++  +||+|+|||++++.+++.+.... ..+...+++.++|.....
T Consensus        22 ~~l~gR~~el~~l~~~l~~~~~~~~--~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (412)
T 1w5s_A           22 PELRVRRGEAEALARIYLNRLLSGA--GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN   99 (412)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSS--CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred             CCCCChHHHHHHHHHHHhHHHhcCC--CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence            45899999999998888 6654331  023446788  99999999999999998854300 001123455666532110


Q ss_pred             --------------CCCChHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCh------hhHHHHHhhcccCccccccc
Q psy1694         154 --------------PNENHVSLYRLQLTNWIISNVTA-CDRAIFIFDEVDKFPK------GLLDVIIPFIDHHAVYNQIS  212 (247)
Q Consensus       154 --------------~~~~~v~~~~~~l~~~~~~~l~~-~~~~vlilDEiek~~~------~~~~~Ll~~Le~~~~~~~~~  212 (247)
                                    +.+.. +.-...+...+...+.. ....+|||||++.+..      ..+..+++.+++..    .+
T Consensus       100 ~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~----~~  174 (412)
T 1w5s_A          100 LYTILSLIVRQTGYPIQVR-GAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIP----SR  174 (412)
T ss_dssp             HHHHHHHHHHHHTCCCCCT-TCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSC----CT
T ss_pred             HHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcc----cC
Confidence                          00000 00001112233333332 3346899999999753      66666777766421    01


Q ss_pred             C--CceEEEEEeCCC
Q psy1694         213 F--QNTIFLFLSNSG  225 (247)
Q Consensus       213 ~--~~~ifI~tSN~g  225 (247)
                      -  .+..+|+++|..
T Consensus       175 ~~~~~v~lI~~~~~~  189 (412)
T 1w5s_A          175 DGVNRIGFLLVASDV  189 (412)
T ss_dssp             TSCCBEEEEEEEEET
T ss_pred             CCCceEEEEEEeccc
Confidence            1  467788888643

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=98.55  E-value=5.4e-08  Score=80.94  Aligned_cols=108  Identities=16%  Similarity=0.190  Sum_probs=59.7

Q ss_pred             HHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHH
Q psy1694          91 CGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWI  170 (247)
Q Consensus        91 ~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~  170 (247)
                      ...++.++..-  |+ ...++|+||||||||++|.++++.+.+   +.  ..|+  +....      .   +       +
T Consensus        45 ~~~l~~~~~~i--Pk-kn~ili~GPPGtGKTt~a~ala~~l~g---~i--~~fa--ns~s~------f---~-------l   98 (212)
T 1tue_A           45 LGALKSFLKGT--PK-KNCLVFCGPANTGKSYFGMSFIHFIQG---AV--ISFV--NSTSH------F---W-------L   98 (212)
T ss_dssp             HHHHHHHHHTC--TT-CSEEEEESCGGGCHHHHHHHHHHHHTC---EE--CCCC--CSSSC------G---G-------G
T ss_pred             HHHHHHHHhcC--Cc-ccEEEEECCCCCCHHHHHHHHHHHhCC---Ce--eeEE--eccch------h---h-------h
Confidence            44455554432  22 346899999999999999999998744   10  0111  00000      0   0       0


Q ss_pred             HHHHHhCCCeEEEEeCCCCCChh-hHHHHHhhcccCcccccc------cCCceEEEEEeCCChH
Q psy1694         171 ISNVTACDRAIFIFDEVDKFPKG-LLDVIIPFIDHHAVYNQI------SFQNTIFLFLSNSGGT  227 (247)
Q Consensus       171 ~~~l~~~~~~vlilDEiek~~~~-~~~~Ll~~Le~~~~~~~~------~~~~~ifI~tSN~g~~  227 (247)
                       ..+  ....+++|||++...-. +...+..+|+...+....      ......+|+|||....
T Consensus        99 -~~l--~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~  159 (212)
T 1tue_A           99 -EPL--TDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPA  159 (212)
T ss_dssp             -GGG--TTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTT
T ss_pred             -ccc--CCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcc
Confidence             011  12469999999843322 234556666654322222      2233589999998543

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=98.43  E-value=4.1e-07  Score=78.52  Aligned_cols=106  Identities=16%  Similarity=0.168  Sum_probs=64.1

Q ss_pred             HHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHH
Q psy1694          89 HICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTN  168 (247)
Q Consensus        89 ~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~  168 (247)
                      .+..++..++....  .+...++|+||||||||++|.+||+.+--   .|      .++.+.-.+               
T Consensus        88 ~~~~~l~~~l~~~~--~~~n~~~l~GppgtGKt~~a~ala~~~~l---~G------~vn~~~~~f---------------  141 (267)
T 1u0j_A           88 YAASVFLGWATKKF--GKRNTIWLFGPATTGKTNIAEAIAHTVPF---YG------CVNWTNENF---------------  141 (267)
T ss_dssp             HHHHHHHHHHTTCS--TTCCEEEEECSTTSSHHHHHHHHHHHSSC---EE------ECCTTCSSC---------------
T ss_pred             HHHHHHHHHHhCCC--CCCcEEEEECCCCCCHHHHHHHHHhhhcc---cc------eeecccccc---------------
Confidence            45566677765542  23447999999999999999999886211   11      001110000               


Q ss_pred             HHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc------cccCCceEEEEEeCC
Q psy1694         169 WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN------QISFQNTIFLFLSNS  224 (247)
Q Consensus       169 ~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~------~~~~~~~ifI~tSN~  224 (247)
                          .+..+....++++|-..+..+.+..++.+++-.....      .....++.+|+|||.
T Consensus       142 ----~l~~~~~k~i~l~Ee~~~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~  199 (267)
T 1u0j_A          142 ----PFNDCVDKMVIWWEEGKMTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNT  199 (267)
T ss_dssp             ----TTGGGSSCSEEEECSCCEETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESS
T ss_pred             ----ccccccccEEEEeccccchhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecC
Confidence                1223334455555555666677788888887443221      124567789999998

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=98.23  E-value=6.4e-06  Score=71.99  Aligned_cols=41  Identities=22%  Similarity=0.336  Sum_probs=32.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .++|.+...+.+.+ +..     .      .++++||+|+|||++++.+++.+
T Consensus        14 ~~~gR~~el~~L~~-l~~-----~------~v~i~G~~G~GKT~L~~~~~~~~   54 (357)
T 2fna_A           14 DFFDREKEIEKLKG-LRA-----P------ITLVLGLRRTGKSSIIKIGINEL   54 (357)
T ss_dssp             GSCCCHHHHHHHHH-TCS-----S------EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HhcChHHHHHHHHH-hcC-----C------cEEEECCCCCCHHHHHHHHHHhc
Confidence            47888877776665 432     2      68899999999999999998874

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.21  E-value=7.2e-06  Score=89.43  Aligned_cols=113  Identities=15%  Similarity=0.127  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHH
Q psy1694          87 ISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQL  166 (247)
Q Consensus        87 ~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l  166 (247)
                      .++....+...+....      ..++.||+|||||++++.+|+.+-        .+++.++|++-..        +. .+
T Consensus       631 tdr~~~tl~~Al~~~~------~~~l~GpaGtGKTe~vk~LA~~lg--------~~~v~~nc~e~ld--------~~-~l  687 (2695)
T 4akg_A          631 LLIGFATLTDSLHQKY------GGCFFGPAGTGKTETVKAFGQNLG--------RVVVVFNCDDSFD--------YQ-VL  687 (2695)
T ss_dssp             HHHHHHHHHHHHHTTC------EEEEECCTTSCHHHHHHHHHHTTT--------CCCEEEETTSSCC--------HH-HH
T ss_pred             HHHHHHHHHHHHHhCC------CCcccCCCCCCcHHHHHHHHHHhC--------CcEEEEECCCCCC--------hh-Hh
Confidence            3444444444443332      568899999999999999999853        3789999876321        11 23


Q ss_pred             HHHHHHHHHhCCCeEEEEeCCCCCChhhHHHH-------HhhcccCccc---cc--c-cCCceEEEEEeCC
Q psy1694         167 TNWIISNVTACDRAIFIFDEVDKFPKGLLDVI-------IPFIDHHAVY---NQ--I-SFQNTIFLFLSNS  224 (247)
Q Consensus       167 ~~~~~~~l~~~~~~vlilDEiek~~~~~~~~L-------l~~Le~~~~~---~~--~-~~~~~ifI~tSN~  224 (247)
                      .+.+.+....  +..++|||+++++++++..+       ...+.++...   .+  + -..+..+++|+|-
T Consensus       688 g~~~~g~~~~--Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NP  756 (2695)
T 4akg_A          688 SRLLVGITQI--GAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNP  756 (2695)
T ss_dssp             HHHHHHHHHH--TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECC
T ss_pred             hHHHHHHHhc--CCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCC
Confidence            4445454433  47999999999999988887       4444443311   11  1 1245667888894

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=98.18  E-value=9.4e-06  Score=71.70  Aligned_cols=96  Identities=7%  Similarity=-0.031  Sum_probs=65.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  188 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie  188 (247)
                      +++|+||+|+||++.++.+++.+.+   .+.. ++..+   +++.  ...+.    .+.+.....--..++.++++||++
T Consensus        20 ~yl~~G~e~~~~~~~~~~l~~~~~~---~~~~-~~~~~---~~~~--~~~~~----~l~~~~~~~plf~~~kvvii~~~~   86 (343)
T 1jr3_D           20 AYLLLGNDPLLLQESQDAVRQVAAA---QGFE-EHHTF---SIDP--NTDWN----AIFSLCQAMSLFASRQTLLLLLPE   86 (343)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHHH---HTCC-EEEEE---ECCT--TCCHH----HHHHHHHHHHHCCSCEEEEEECCS
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHHh---CCCC-eeEEE---EecC--CCCHH----HHHHHhcCcCCccCCeEEEEECCC
Confidence            7899999999999999999998765   3321 21111   1211  11122    222233222224567999999999


Q ss_pred             C-CChhhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         189 K-FPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       189 k-~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      . ++.+.++.|++++++.+       .+++||++++.
T Consensus        87 ~kl~~~~~~aLl~~le~p~-------~~~~~il~~~~  116 (343)
T 1jr3_D           87 NGPNAAINEQLLTLTGLLH-------DDLLLIVRGNK  116 (343)
T ss_dssp             SCCCTTHHHHHHHHHTTCB-------TTEEEEEEESC
T ss_pred             CCCChHHHHHHHHHHhcCC-------CCeEEEEEcCC
Confidence            9 99999999999999865       57788887754

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=98.17  E-value=1.1e-05  Score=70.28  Aligned_cols=42  Identities=17%  Similarity=0.199  Sum_probs=34.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .++|.+...+.+.+.+..    ..      .++++||+|+|||++++.+++.
T Consensus        13 ~~~gR~~el~~L~~~l~~----~~------~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           13 DIFDREEESRKLEESLEN----YP------LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             GSCSCHHHHHHHHHHHHH----CS------EEEEECCTTSSHHHHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHhc----CC------eEEEECCCcCCHHHHHHHHHHH
Confidence            488998888888777654    13      6889999999999999999775

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=98.13  E-value=1.5e-05  Score=70.52  Aligned_cols=72  Identities=8%  Similarity=0.148  Sum_probs=41.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  188 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie  188 (247)
                      .++++||||+|||++|..++.. .+     ....|+.....+........   .. .....+...+.+.+  ++||||++
T Consensus       125 viLI~GpPGsGKTtLAlqlA~~-~G-----~~VlyIs~~~eE~v~~~~~~---le-~~l~~i~~~l~~~~--LLVIDsI~  192 (331)
T 2vhj_A          125 MVIVTGKGNSGKTPLVHALGEA-LG-----GKDKYATVRFGEPLSGYNTD---FN-VFVDDIARAMLQHR--VIVIDSLK  192 (331)
T ss_dssp             EEEEECSCSSSHHHHHHHHHHH-HH-----TTSCCEEEEBSCSSTTCBCC---HH-HHHHHHHHHHHHCS--EEEEECCT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHh-CC-----CCEEEEEecchhhhhhhhcC---HH-HHHHHHHHHHhhCC--EEEEeccc
Confidence            5689999999999999999876 22     12345555211110000011   11 12223334455544  99999999


Q ss_pred             CCCh
Q psy1694         189 KFPK  192 (247)
Q Consensus       189 k~~~  192 (247)
                      .+.+
T Consensus       193 aL~~  196 (331)
T 2vhj_A          193 NVIG  196 (331)
T ss_dssp             TTC-
T ss_pred             cccc
Confidence            8854

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.13  E-value=3.5e-06  Score=91.77  Aligned_cols=102  Identities=12%  Similarity=0.175  Sum_probs=61.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHh------------
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA------------  176 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~------------  176 (247)
                      .++|+||||||||++|+.+...+     .  .-+++.++++....     ..    .+.+.+...+..            
T Consensus      1269 ~vLL~GPpGtGKT~la~~~l~~~-----~--~~~~~~infsa~ts-----~~----~~~~~i~~~~~~~~~~~g~~~~P~ 1332 (2695)
T 4akg_A         1269 GIILCGPPGSGKTMIMNNALRNS-----S--LYDVVGINFSKDTT-----TE----HILSALHRHTNYVTTSKGLTLLPK 1332 (2695)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC-----S--SCEEEEEECCTTCC-----HH----HHHHHHHHHBCCEEETTTEEEEEB
T ss_pred             eEEEECCCCCCHHHHHHHHHhcC-----C--CCceEEEEeecCCC-----HH----HHHHHHHHHhhhccccCCccccCC
Confidence            57999999999999995553321     1  22445555543211     11    122223222110            


Q ss_pred             --CCCeEEEEeCCCCCCh------hhHHHHHhhcccCccccc-----ccCCceEEEEEeCCCh
Q psy1694         177 --CDRAIFIFDEVDKFPK------GLLDVIIPFIDHHAVYNQ-----ISFQNTIFLFLSNSGG  226 (247)
Q Consensus       177 --~~~~vlilDEiek~~~------~~~~~Ll~~Le~~~~~~~-----~~~~~~ifI~tSN~g~  226 (247)
                        ....|+|+||++....      ..+..|.+.+|.+.+.+.     +.+.+..||.++|..+
T Consensus      1333 ~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~ 1395 (2695)
T 4akg_A         1333 SDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPT 1395 (2695)
T ss_dssp             SSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTT
T ss_pred             CCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCc
Confidence              1125999999876433      378888999987654332     2446788999999764

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=98.04  E-value=2.1e-05  Score=72.48  Aligned_cols=105  Identities=21%  Similarity=0.326  Sum_probs=61.0

Q ss_pred             ChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHH
Q psy1694          82 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSL  161 (247)
Q Consensus        82 Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~  161 (247)
                      +|..|++.+.+.+..    +    ++ .+++.|++|||||+++..++..+..   .+.. . +.....+     ......
T Consensus        29 ~Q~~av~~~~~~i~~----~----~~-~~li~G~aGTGKT~ll~~~~~~l~~---~~~~-~-il~~a~T-----~~Aa~~   89 (459)
T 3upu_A           29 GQKNAFNIVMKAIKE----K----KH-HVTINGPAGTGATTLTKFIIEALIS---TGET-G-IILAAPT-----HAAKKI   89 (459)
T ss_dssp             HHHHHHHHHHHHHHS----S----SC-EEEEECCTTSCHHHHHHHHHHHHHH---TTCC-C-EEEEESS-----HHHHHH
T ss_pred             HHHHHHHHHHHHHhc----C----CC-EEEEEeCCCCCHHHHHHHHHHHHHh---cCCc-e-EEEecCc-----HHHHHH
Confidence            466666666555442    1    11 6799999999999999999999866   3321 1 2111111     000010


Q ss_pred             HHHHHH---HHHHHHHH-------------------hCCCeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694         162 YRLQLT---NWIISNVT-------------------ACDRAIFIFDEVDKFPKGLLDVIIPFIDHH  205 (247)
Q Consensus       162 ~~~~l~---~~~~~~l~-------------------~~~~~vlilDEiek~~~~~~~~Ll~~Le~~  205 (247)
                      ..+.+.   ..+...+.                   .....++++||+..++...+..|++.+..+
T Consensus        90 l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~  155 (459)
T 3upu_A           90 LSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPW  155 (459)
T ss_dssp             HHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCTT
T ss_pred             HHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhccCC
Confidence            110000   00011111                   113589999999999999999999988743

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=98.00  E-value=1.3e-05  Score=65.99  Aligned_cols=111  Identities=11%  Similarity=0.065  Sum_probs=64.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc-----------cc---------cCCC-CChHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS-----------RI---------HFPN-ENHVSLYRLQLT  167 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~-----------~l---------~~~~-~~~v~~~~~~l~  167 (247)
                      .+++++++|.|||++|-.+|-...+   .|.+.-++.+.-+           .+         .|.- ......-.....
T Consensus        30 ~i~v~tG~GkGKTTaA~GlalRA~g---~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~  106 (196)
T 1g5t_A           30 IIIVFTGNGKGKTTAAFGTAARAVG---HGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM  106 (196)
T ss_dssp             CEEEEESSSSCHHHHHHHHHHHHHH---TTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence            4666789999999999999888777   6654433322111           11         0000 000000011111


Q ss_pred             H---HHHHHHHhCCCeEEEEeCC------CCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694         168 N---WIISNVTACDRAIFIFDEV------DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT  232 (247)
Q Consensus       168 ~---~~~~~l~~~~~~vlilDEi------ek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~  232 (247)
                      .   .....+....+++|||||+      +.++.+   .++.+|..++       .+.-+|+|+|..++++-+.
T Consensus       107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~---ev~~~l~~Rp-------~~~~vIlTGr~ap~~l~e~  170 (196)
T 1g5t_A          107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLE---EVISALNARP-------GHQTVIITGRGCHRDILDL  170 (196)
T ss_dssp             HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHH---HHHHHHHTSC-------TTCEEEEECSSCCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHH---HHHHHHHhCc-------CCCEEEEECCCCcHHHHHh
Confidence            1   2233344456799999999      445543   3556666654       6778999999998877654

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.92  E-value=0.00035  Score=60.49  Aligned_cols=28  Identities=29%  Similarity=0.400  Sum_probs=24.8

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ..+|..+++.||||+|||++|+.+++.+
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578889999999999999999998874

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=97.87  E-value=3.1e-05  Score=63.82  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=20.5

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      -++..+++|+||+|||+.|..++..
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence            3557889999999999999886544

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.73  E-value=0.0002  Score=79.15  Aligned_cols=98  Identities=18%  Similarity=0.156  Sum_probs=65.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  188 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie  188 (247)
                      ...+.||+|||||.+++.+|+.+-.        +++.++|++-..        |. .+.+.+.+..+.  +.-.+|||++
T Consensus       606 gg~~~GPaGtGKTet~k~La~~lgr--------~~~vfnC~~~~d--------~~-~~g~i~~G~~~~--GaW~cfDEfN  666 (3245)
T 3vkg_A          606 GGNPFGPAGTGKTETVKALGSQLGR--------FVLVFCCDEGFD--------LQ-AMSRIFVGLCQC--GAWGCFDEFN  666 (3245)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTC--------CEEEEECSSCCC--------HH-HHHHHHHHHHHH--TCEEEEETTT
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHhCC--------eEEEEeCCCCCC--------HH-HHHHHHhhHhhc--CcEEEehhhh
Confidence            4478899999999999999999533        778888876321        22 234455554443  5677899999


Q ss_pred             CCChhhHHHHHhhcc---------cCccc-c-c--cc-CCceEEEEEeCCC
Q psy1694         189 KFPKGLLDVIIPFID---------HHAVY-N-Q--IS-FQNTIFLFLSNSG  225 (247)
Q Consensus       189 k~~~~~~~~Ll~~Le---------~~~~~-~-~--~~-~~~~ifI~tSN~g  225 (247)
                      +++++++..+.+.++         ..++. . +  +. ..++.+++|.|.|
T Consensus       667 rl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpg  717 (3245)
T 3vkg_A          667 RLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPG  717 (3245)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCC
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCC
Confidence            999998888776554         11111 1 2  11 1356788888964

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=97.71  E-value=0.00019  Score=68.20  Aligned_cols=86  Identities=16%  Similarity=0.114  Sum_probs=51.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHH---HHHHHHHH----------
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT---NWIISNVT----------  175 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~---~~~~~~l~----------  175 (247)
                      .+++.|+||||||+++..++..+..   .+.  + |.+.+++     ........+.+.   ..+...+.          
T Consensus       206 ~~~I~G~pGTGKTt~i~~l~~~l~~---~g~--~-Vl~~ApT-----~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~  274 (574)
T 3e1s_A          206 LVVLTGGPGTGKSTTTKAVADLAES---LGL--E-VGLCAPT-----GKAARRLGEVTGRTASTVHRLLGYGPQGFRHNH  274 (574)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH---TTC--C-EEEEESS-----HHHHHHHHHHHTSCEEEHHHHTTEETTEESCSS
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh---cCC--e-EEEecCc-----HHHHHHhHhhhcccHHHHHHHHcCCcchhhhhh
Confidence            6788999999999999999888655   331  1 2221111     011110110000   00111110          


Q ss_pred             --hCCCeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694         176 --ACDRAIFIFDEVDKFPKGLLDVIIPFIDHH  205 (247)
Q Consensus       176 --~~~~~vlilDEiek~~~~~~~~Ll~~Le~~  205 (247)
                        ..+.+++|+||+..++...+..|++.+..+
T Consensus       275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~~~  306 (574)
T 3e1s_A          275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVPPG  306 (574)
T ss_dssp             SSCCSCSEEEECCGGGCCHHHHHHHHTTSCTT
T ss_pred             cccccCCEEEEcCccCCCHHHHHHHHHhCcCC
Confidence              113589999999999999999999888754

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.71  E-value=2.8e-05  Score=63.04  Aligned_cols=27  Identities=30%  Similarity=0.485  Sum_probs=22.9

Q ss_pred             CCeEEEEeCCCCCChhhHHHHHhhccc
Q psy1694         178 DRAIFIFDEVDKFPKGLLDVIIPFIDH  204 (247)
Q Consensus       178 ~~~vlilDEiek~~~~~~~~Ll~~Le~  204 (247)
                      +..+|++||++.+++++++.|.++.++
T Consensus        76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~  102 (184)
T 2orw_A           76 DTRGVFIDEVQFFNPSLFEVVKDLLDR  102 (184)
T ss_dssp             TEEEEEECCGGGSCTTHHHHHHHHHHT
T ss_pred             CCCEEEEECcccCCHHHHHHHHHHHHC
Confidence            358999999999988888888877775

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.70  E-value=0.00029  Score=56.71  Aligned_cols=23  Identities=35%  Similarity=0.579  Sum_probs=20.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.|.||+|+||||+++.|+..+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999875

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.69  E-value=0.00099  Score=61.15  Aligned_cols=28  Identities=25%  Similarity=0.281  Sum_probs=25.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +|.++++.|++|+||||++..||..+..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~  123 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK  123 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5778999999999999999999988755

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=97.67  E-value=0.0006  Score=57.20  Aligned_cols=26  Identities=27%  Similarity=0.324  Sum_probs=21.0

Q ss_pred             CCeEEEEeCCCCCChhhHHHHHhhcc
Q psy1694         178 DRAIFIFDEVDKFPKGLLDVIIPFID  203 (247)
Q Consensus       178 ~~~vlilDEiek~~~~~~~~Ll~~Le  203 (247)
                      ..++||+||++.++......++..+.
T Consensus       192 ~~~llIiDEaH~l~~~~~~~i~~~~~  217 (237)
T 2fz4_A          192 RFMLLIFDEVHHLPAESYVQIAQMSI  217 (237)
T ss_dssp             TCSEEEEECSSCCCTTTHHHHHHTCC
T ss_pred             cCCEEEEECCccCCChHHHHHHHhcc
Confidence            46899999999999877777766654

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.65  E-value=9.5e-05  Score=62.02  Aligned_cols=93  Identities=16%  Similarity=0.044  Sum_probs=49.2

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec---------ccccCCCCC-hHHHHHHHHHHHHHHHHHh
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN---------SRIHFPNEN-HVSLYRLQLTNWIISNVTA  176 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~---------~~l~~~~~~-~v~~~~~~l~~~~~~~l~~  176 (247)
                      ...++++||+|+|||+++..++..+..   .+...-++....         +.+....+. .+... ..+...+......
T Consensus        12 G~i~litG~mGsGKTT~ll~~~~r~~~---~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~-~~i~~~i~~~~~~   87 (223)
T 2b8t_A           12 GWIEFITGPMFAGKTAELIRRLHRLEY---ADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESA-PEILNYIMSNSFN   87 (223)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESST-HHHHHHHHSTTSC
T ss_pred             cEEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEEeccCchHHHHHHHhcCCCccccccCCH-HHHHHHHHHHhhC
Confidence            346888999999999999888877654   332211111011         111000000 01101 1112222221222


Q ss_pred             CCCeEEEEeCCCCCChhhHHHHHhhcc
Q psy1694         177 CDRAIFIFDEVDKFPKGLLDVIIPFID  203 (247)
Q Consensus       177 ~~~~vlilDEiek~~~~~~~~Ll~~Le  203 (247)
                      ....+|++||++.+++++...+..+-+
T Consensus        88 ~~~dvViIDEaQ~l~~~~ve~l~~L~~  114 (223)
T 2b8t_A           88 DETKVIGIDEVQFFDDRICEVANILAE  114 (223)
T ss_dssp             TTCCEEEECSGGGSCTHHHHHHHHHHH
T ss_pred             CCCCEEEEecCccCcHHHHHHHHHHHh
Confidence            346899999999999887666655444

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.57  E-value=0.0015  Score=60.06  Aligned_cols=49  Identities=16%  Similarity=0.234  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHhhhcccC----CCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694          85 LAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus        85 ~a~~~l~~~l~~~~~~~~~----~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ..++.+.+.+...+.....    ..+|.++++.|++|+||||++..||..+..
T Consensus        74 ~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~  126 (443)
T 3dm5_A           74 HIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQK  126 (443)
T ss_dssp             HHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence            3444555555554432110    135788999999999999999999998755

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.56  E-value=0.00023  Score=75.93  Aligned_cols=79  Identities=13%  Similarity=0.162  Sum_probs=45.7

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc--------------cccCCCCChHHHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS--------------RIHFPNENHVSLYRLQLTNWII  171 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~--------------~l~~~~~~~v~~~~~~l~~~~~  171 (247)
                      ++.+++|+||||||||++|..++.....   .|....|+...-+              .+....+....    +....+.
T Consensus      1426 ~g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E----~~l~~~~ 1498 (2050)
T 3cmu_A         1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE----QALEICD 1498 (2050)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHH----HHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHH----HHHHHHH
Confidence            4557999999999999999999887554   4432223222100              01111111111    2223344


Q ss_pred             HHHHhCCCeEEEEeCCC-CCC
Q psy1694         172 SNVTACDRAIFIFDEVD-KFP  191 (247)
Q Consensus       172 ~~l~~~~~~vlilDEie-k~~  191 (247)
                      ..++....++||+||++ ..|
T Consensus      1499 ~lvr~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A         1499 ALARSGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp             HHHHHTCCSEEEESCGGGCCC
T ss_pred             HHHhcCCCCEEEEcChhHhcc
Confidence            44556667999999996 444

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=97.54  E-value=0.00076  Score=64.43  Aligned_cols=27  Identities=11%  Similarity=0.257  Sum_probs=22.9

Q ss_pred             CCeEEEEeCCCCCChhhHHHHHhhccc
Q psy1694         178 DRAIFIFDEVDKFPKGLLDVIIPFIDH  204 (247)
Q Consensus       178 ~~~vlilDEiek~~~~~~~~Ll~~Le~  204 (247)
                      +..++|+||++.++...+..|++.+..
T Consensus       262 ~~d~lIIDEAsml~~~~~~~Ll~~l~~  288 (608)
T 1w36_D          262 HLDVLVVDEASMIDLPMMSRLIDALPD  288 (608)
T ss_dssp             SCSEEEECSGGGCBHHHHHHHHHTCCT
T ss_pred             CCCEEEEechhhCCHHHHHHHHHhCCC
Confidence            347999999999998888899888754

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.48  E-value=0.00085  Score=56.67  Aligned_cols=28  Identities=25%  Similarity=0.414  Sum_probs=24.9

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ..+|..+++.|+||+|||++|+.|++.+
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            4567789999999999999999999874

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.47  E-value=0.00013  Score=80.52  Aligned_cols=101  Identities=15%  Similarity=0.172  Sum_probs=59.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHH-----------hC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT-----------AC  177 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~-----------~~  177 (247)
                      .++|+||||||||.+++.....+       ...+++.++++....     ..    .+.+.+...+.           ..
T Consensus      1306 pvLL~GptGtGKT~li~~~L~~l-------~~~~~~~infS~~Tt-----a~----~l~~~~e~~~e~~~~~~~G~~~~p 1369 (3245)
T 3vkg_A         1306 PLILCGPPGSGKTMTLTSTLRAF-------PDFEVVSLNFSSATT-----PE----LLLKTFDHHCEYKRTPSGETVLRP 1369 (3245)
T ss_dssp             CCEEESSTTSSHHHHHHHHGGGC-------TTEEEEEECCCTTCC-----HH----HHHHHHHHHEEEEECTTSCEEEEE
T ss_pred             cEEEECCCCCCHHHHHHHHHHhC-------CCCceEEEEeeCCCC-----HH----HHHHHHhhcceEEeccCCCcccCC
Confidence            35999999999997764432221       122455666544211     11    11222221111           11


Q ss_pred             ----CCeEEEEeCCCCCChh------hHHHHHhhcccCccccc-----ccCCceEEEEEeCCC
Q psy1694         178 ----DRAIFIFDEVDKFPKG------LLDVIIPFIDHHAVYNQ-----ISFQNTIFLFLSNSG  225 (247)
Q Consensus       178 ----~~~vlilDEiek~~~~------~~~~Ll~~Le~~~~~~~-----~~~~~~ifI~tSN~g  225 (247)
                          ...|+|+||++.-.++      .+..|.++||.+.+.+.     +...+..||.++|.+
T Consensus      1370 ~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp 1432 (3245)
T 3vkg_A         1370 TQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPP 1432 (3245)
T ss_dssp             SSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCT
T ss_pred             CcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCC
Confidence                1258889999876554      78889999998765442     245677899999864

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.36  E-value=0.0077  Score=53.12  Aligned_cols=29  Identities=21%  Similarity=0.311  Sum_probs=25.3

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+|.++.+.||+|+||||+++.|+..+..
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~  155 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN  155 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            46778999999999999999999988644

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.34  E-value=0.00057  Score=55.82  Aligned_cols=25  Identities=32%  Similarity=0.529  Sum_probs=21.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+.+.||+|+|||++++.++..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~~~~   49 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAKGLR   49 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            6788999999999999999876543

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.31  E-value=0.0015  Score=54.78  Aligned_cols=26  Identities=27%  Similarity=0.437  Sum_probs=23.7

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +.+++.|++|||||++|-.+|..+..
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l~~   32 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQLR   32 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHH
Confidence            56899999999999999999999776

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.30  E-value=0.00014  Score=57.50  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=22.2

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      |..+++.|+||+|||++|+.|++.+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            3468899999999999999999884

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.27  E-value=0.0094  Score=52.06  Aligned_cols=29  Identities=21%  Similarity=0.319  Sum_probs=25.0

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+|.++++.||+|+||||++..+|..+..
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~  130 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVD  130 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence            35668999999999999999999988654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.26  E-value=0.0091  Score=51.82  Aligned_cols=27  Identities=22%  Similarity=0.268  Sum_probs=23.9

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ++.++.+.||+|+|||+++..+|..+.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            466889999999999999999998864

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.25  E-value=0.0002  Score=58.04  Aligned_cols=28  Identities=21%  Similarity=0.360  Sum_probs=25.0

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +.+|+.++|.|+||+|||++|+.|++.+
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4577789999999999999999999874

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.24  E-value=0.00022  Score=56.92  Aligned_cols=27  Identities=22%  Similarity=0.432  Sum_probs=24.0

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+|..+++.|+||+|||++++.+++.+
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            356788999999999999999999874

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.22  E-value=0.0014  Score=53.24  Aligned_cols=21  Identities=14%  Similarity=-0.007  Sum_probs=19.7

Q ss_pred             EEEEeecCCChHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~  129 (247)
                      .+.+.||+|+|||+++..++.
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999999987

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.21  E-value=0.00014  Score=57.68  Aligned_cols=27  Identities=19%  Similarity=0.278  Sum_probs=18.9

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+|..++|.|++|+|||++|+.|++.+
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            366789999999999999999999874

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=97.21  E-value=0.0019  Score=60.66  Aligned_cols=44  Identities=20%  Similarity=0.342  Sum_probs=34.7

Q ss_pred             CChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHH
Q psy1694          81 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus        81 ~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~  129 (247)
                      +|.+..++.+.+.+....     ...+.++.++|+.|+|||++|+.+++
T Consensus       131 ~GR~~~~~~l~~~L~~~~-----~~~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMC-----DLDSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHT-----TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhccc-----CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence            699988888888875321     12344789999999999999999986

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.20  E-value=0.00031  Score=55.82  Aligned_cols=27  Identities=19%  Similarity=0.465  Sum_probs=23.4

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +..++|.|+||+||||+++.|++.+-.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~   29 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRK   29 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999998643

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19

Probab=97.18  E-value=0.0039  Score=50.11  Aligned_cols=52  Identities=15%  Similarity=0.192  Sum_probs=28.5

Q ss_pred             CeEEEEeCCCCCCh-hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHHH
Q psy1694         179 RAIFIFDEVDKFPK-GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELR  237 (247)
Q Consensus       179 ~~vlilDEiek~~~-~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~~  237 (247)
                      ..++|+||++.+.. +....+..++..-+       .+.-+++.|-+-++.+.+.+.+++
T Consensus       147 ~~~lViDEah~~~~~~~~~~l~~i~~~~~-------~~~~~l~~SAT~~~~~~~~~~~~l  199 (206)
T 1vec_A          147 VQMIVLDEADKLLSQDFVQIMEDIILTLP-------KNRQILLYSATFPLSVQKFMNSHL  199 (206)
T ss_dssp             CCEEEEETHHHHTSTTTHHHHHHHHHHSC-------TTCEEEEEESCCCHHHHHHHHHHC
T ss_pred             CCEEEEEChHHhHhhCcHHHHHHHHHhCC-------ccceEEEEEeeCCHHHHHHHHHHc
Confidence            38999999997654 33444444333211       123345555555666666655544

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.15  E-value=0.00027  Score=56.31  Aligned_cols=26  Identities=35%  Similarity=0.445  Sum_probs=22.6

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +|..+.|.|+||+|||++|+.|++.+
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            35678999999999999999999874

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.15  E-value=0.0017  Score=57.75  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=21.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+++.||||+|||++|..++..+..
T Consensus        63 iv~I~G~pGsGKTtLal~la~~~~~   87 (349)
T 2zr9_A           63 VIEIYGPESSGKTTVALHAVANAQA   87 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            6889999999999999999877554

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.15  E-value=0.0019  Score=57.65  Aligned_cols=25  Identities=16%  Similarity=0.303  Sum_probs=22.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+++.|+||+|||++|..++..+..
T Consensus        65 ii~I~G~pGsGKTtLal~la~~~~~   89 (356)
T 1u94_A           65 IVEIYGPESSGKTTLTLQVIAAAQR   89 (356)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            6889999999999999999887654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.15  E-value=0.00027  Score=56.27  Aligned_cols=24  Identities=33%  Similarity=0.371  Sum_probs=21.7

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ..++|.|++|+|||++|+.||+.+
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            368899999999999999999885

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.13  E-value=0.00063  Score=57.22  Aligned_cols=27  Identities=22%  Similarity=0.191  Sum_probs=24.1

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+|+.++|.||||+||||+|+.|++.+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            367789999999999999999999874

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.13  E-value=0.00068  Score=71.41  Aligned_cols=27  Identities=15%  Similarity=0.209  Sum_probs=22.4

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ++..++++||||||||++|..++.+-.
T Consensus      1081 ~g~~~l~~G~~g~GKT~la~~~~~~~~ 1107 (1706)
T 3cmw_A         1081 MGRIVEIYGPESSGKTTLTLQVIAAAQ 1107 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCChHHHHHHHHHHhh
Confidence            334589999999999999999987643

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.13  E-value=0.0038  Score=55.80  Aligned_cols=26  Identities=15%  Similarity=0.252  Sum_probs=22.5

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ..+++.||||+|||+++..++..+..
T Consensus        62 ~i~~I~GppGsGKSTLal~la~~~~~   87 (356)
T 3hr8_A           62 RIVEIFGQESSGKTTLALHAIAEAQK   87 (356)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            36889999999999999999887644

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.12  E-value=0.00034  Score=55.96  Aligned_cols=26  Identities=35%  Similarity=0.406  Sum_probs=23.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++..+.|.|++|+|||++|+.|++.+
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            45578999999999999999999874

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.11  E-value=0.00029  Score=55.49  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=21.4

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHH
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      |..+++.|+||+|||++|+.|++.
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~   25 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAK   25 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhh
Confidence            457899999999999999999883

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.08  E-value=0.0032  Score=51.90  Aligned_cols=25  Identities=32%  Similarity=0.460  Sum_probs=21.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+++.||||+|||+++..++..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~~~~~   49 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLWNGLK   49 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            6889999999999999888776543

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.07  E-value=0.0041  Score=55.72  Aligned_cols=25  Identities=24%  Similarity=0.208  Sum_probs=21.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+++.||||+|||++|..++.....
T Consensus        76 li~I~G~pGsGKTtlal~la~~~~~  100 (366)
T 1xp8_A           76 ITEIYGPESGGKTTLALAIVAQAQK  100 (366)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHHHHHHH
Confidence            5788999999999999998887544

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.06  E-value=0.00035  Score=56.61  Aligned_cols=26  Identities=27%  Similarity=0.385  Sum_probs=23.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++..+.|.|++|+|||++|+.|++.+
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45578999999999999999998874

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.05  E-value=0.015  Score=51.13  Aligned_cols=63  Identities=11%  Similarity=0.167  Sum_probs=39.2

Q ss_pred             HHHHHHHhhcCChHH---HHHHHHHHHHHhhhccc----------CCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694          71 VLEEQLKQHVHGQEL---AISHICGALKNHFQNRY----------HNTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus        71 ~L~~~L~~~l~Gq~~---a~~~l~~~l~~~~~~~~----------~~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+-+.+++++.|+..   ..+.+.+.+...+....          ...+|.++.+.|++|+|||+++..||..+..
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~  131 (320)
T 1zu4_A           56 KVSNLVRKKTKRDTSFENIKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE  131 (320)
T ss_dssp             HHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            345555556666422   33344444444332211          1235668999999999999999999988654

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.04  E-value=0.0033  Score=55.18  Aligned_cols=26  Identities=23%  Similarity=0.175  Sum_probs=23.0

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .|..+++.||+|+|||++|..+|+.+
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhC
Confidence            45578899999999999999999984

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.04  E-value=0.00038  Score=55.39  Aligned_cols=26  Identities=23%  Similarity=0.397  Sum_probs=22.8

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++..+.|.|++|+||||+++.|++.+
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45578999999999999999999874

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.04  E-value=0.00042  Score=56.03  Aligned_cols=26  Identities=23%  Similarity=0.433  Sum_probs=23.1

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +..+.|.|+||+|||++|+.|++.+-
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            45788999999999999999999853

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.04  E-value=0.00038  Score=54.35  Aligned_cols=23  Identities=22%  Similarity=0.130  Sum_probs=21.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.|++|+|||++|+.|++.+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57889999999999999999884

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.03  E-value=0.0004  Score=57.09  Aligned_cols=26  Identities=23%  Similarity=0.422  Sum_probs=23.3

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +++.++|.|+||+||||+|+.|++.+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            45678999999999999999999984

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.03  E-value=0.00035  Score=54.87  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=21.5

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ..+.|.||+|+|||++++.|+..+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            368899999999999999998874

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.02  E-value=0.00042  Score=56.21  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.8

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ..+.|.|++|+|||++++.|++.+
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            368899999999999999999885

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.01  E-value=0.00048  Score=55.21  Aligned_cols=26  Identities=35%  Similarity=0.714  Sum_probs=23.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++..+.|+|++|+|||++++.+++.+
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~l   34 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAEL   34 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            45578999999999999999999873

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.01  E-value=0.00056  Score=54.35  Aligned_cols=26  Identities=31%  Similarity=0.390  Sum_probs=23.0

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .|..+.|.|++|+|||++|+.+++.+
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45678999999999999999998874

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.01  E-value=0.00048  Score=55.91  Aligned_cols=28  Identities=21%  Similarity=0.356  Sum_probs=24.5

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +|..+.|.|++|+|||++++.|++.+-.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~   35 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCA   35 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5668899999999999999999998643

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.00  E-value=0.00046  Score=55.81  Aligned_cols=28  Identities=25%  Similarity=0.342  Sum_probs=24.2

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +.++..+.|.|++|+|||++|+.|++.+
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4466779999999999999999998873

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.99  E-value=0.00042  Score=55.02  Aligned_cols=26  Identities=31%  Similarity=0.364  Sum_probs=22.6

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++..++++|+||+|||++++.+++.+
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            34468899999999999999999874

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.99  E-value=0.0026  Score=54.21  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=21.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+.+.||+|+||||+.++++..+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~~~   50 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDYIN   50 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHhCC
Confidence            688999999999999999988753

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.99  E-value=0.0077  Score=49.95  Aligned_cols=19  Identities=21%  Similarity=0.370  Sum_probs=15.7

Q ss_pred             EEEEeecCCChHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFI  127 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~l  127 (247)
                      .+++.||+|+|||++...+
T Consensus        78 ~~~i~g~TGsGKTt~~~~~   96 (235)
T 3llm_A           78 VVIIRGATGCGKTTQVPQF   96 (235)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEEeCCCCCcHHhHHHH
Confidence            6889999999999766544

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.99  E-value=0.0013  Score=57.09  Aligned_cols=45  Identities=22%  Similarity=0.344  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694          87 ISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus        87 ~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++.|.+.+..+... . +.+|..+.+.|++|+|||++|+.|++.+-.
T Consensus        13 ~~~l~~~i~~~~~~-~-~~~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           13 IEFLDKYIPEWFET-G-NKCPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             HHHHHHHHHHHHTT-T-CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhc-c-CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            34455555444221 1 457788999999999999999999988643

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.98  E-value=0.0026  Score=52.35  Aligned_cols=22  Identities=18%  Similarity=0.241  Sum_probs=20.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+.|.||+|+|||++++.++..
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            6889999999999999999876

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.98  E-value=0.00046  Score=56.81  Aligned_cols=26  Identities=23%  Similarity=0.487  Sum_probs=23.4

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +|..++|.|+||+|||++++.|++.+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            56678999999999999999999885

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.98  E-value=0.00052  Score=55.63  Aligned_cols=27  Identities=26%  Similarity=0.377  Sum_probs=24.2

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +|..+.|.|++|+|||++++.|++.+-
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            567899999999999999999999853

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.97  E-value=0.00055  Score=55.55  Aligned_cols=28  Identities=25%  Similarity=0.454  Sum_probs=24.3

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++..+.+.||+|+|||++++.|+..+..
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~   51 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQMLYQ   51 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4557889999999999999999998753

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.95  E-value=0.00055  Score=56.96  Aligned_cols=27  Identities=26%  Similarity=0.405  Sum_probs=23.9

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .++..++|.|++|+|||++|+.|++.+
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            456679999999999999999999984

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.94  E-value=0.0014  Score=53.22  Aligned_cols=30  Identities=17%  Similarity=0.402  Sum_probs=25.3

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +.++..+.+.|++|+|||++++.|+..+..
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~   48 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            346678999999999999999999988643

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.93  E-value=0.00059  Score=56.85  Aligned_cols=28  Identities=32%  Similarity=0.399  Sum_probs=24.9

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ..+|.++++.||||+||+|.|+.|++.+
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4577789999999999999999999983

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.92  E-value=0.0005  Score=56.83  Aligned_cols=26  Identities=31%  Similarity=0.545  Sum_probs=22.6

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +|..++|.|++|+|||++|+.|++.+
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            55678999999999999999999874

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.91  E-value=0.00061  Score=54.58  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=22.3

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      |..+.+.|+||+|||++|+.|++.+
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4478999999999999999999874

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.91  E-value=0.015  Score=53.21  Aligned_cols=29  Identities=31%  Similarity=0.371  Sum_probs=25.0

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+|.++++.|++|+|||+++..||..+..
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~  125 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYIQK  125 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            35668999999999999999999988654

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.88  E-value=0.00066  Score=53.90  Aligned_cols=25  Identities=24%  Similarity=0.324  Sum_probs=22.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .++|.|+||+|||++|+.|++.+-.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~   27 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4789999999999999999998643

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=96.87  E-value=0.0075  Score=48.35  Aligned_cols=19  Identities=21%  Similarity=0.218  Sum_probs=15.3

Q ss_pred             EEEEeecCCChHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFI  127 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~l  127 (247)
                      .+++.+|+|+|||.++-..
T Consensus        40 ~~li~~~TGsGKT~~~~~~   58 (207)
T 2gxq_A           40 DLIGQARTGTGKTLAFALP   58 (207)
T ss_dssp             CEEEECCTTSCHHHHHHHH
T ss_pred             CEEEECCCCChHHHHHHHH
Confidence            4688999999999885443

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.85  E-value=0.0074  Score=53.84  Aligned_cols=85  Identities=11%  Similarity=0.113  Sum_probs=47.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee-cccccCCC-----------CChHHHHHHHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-NSRIHFPN-----------ENHVSLYRLQLTNWIISNVTA  176 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~-~~~l~~~~-----------~~~v~~~~~~l~~~~~~~l~~  176 (247)
                      .+++.||+|+||||+.++++..+..   .. ....+... -.++..+.           ... ..|.+    .+...+. 
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~~~~---~~-~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~-~~~~~----~La~aL~-  194 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDYLNN---TK-YHHILTIEDPIEFVHESKKCLVNQREVHRDT-LGFSE----ALRSALR-  194 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHH---HC-CCEEEEEESSCCSCCCCSSSEEEEEEBTTTB-SCHHH----HHHHHTT-
T ss_pred             EEEEECCCCCCHHHHHHHHHhcccC---CC-CcEEEEccCcHHhhhhccccceeeeeecccc-CCHHH----HHHHHhh-
Confidence            5889999999999999999887644   10 01111110 00000000           000 11322    3333333 


Q ss_pred             CCCeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694         177 CDRAIFIFDEVDKFPKGLLDVIIPFIDHH  205 (247)
Q Consensus       177 ~~~~vlilDEiek~~~~~~~~Ll~~Le~~  205 (247)
                      ....++++||+-  ++.....+++..+.+
T Consensus       195 ~~PdvillDEp~--d~e~~~~~~~~~~~G  221 (356)
T 3jvv_A          195 EDPDIILVGEMR--DLETIRLALTAAETG  221 (356)
T ss_dssp             SCCSEEEESCCC--SHHHHHHHHHHHHTT
T ss_pred             hCcCEEecCCCC--CHHHHHHHHHHHhcC
Confidence            345899999996  567777777766553

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.85  E-value=0.013  Score=54.03  Aligned_cols=29  Identities=24%  Similarity=0.401  Sum_probs=24.8

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+|..+++.|.||+|||++++.+++.+..
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~   65 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNF   65 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            35678999999999999999999998653

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.84  E-value=0.00061  Score=54.18  Aligned_cols=23  Identities=30%  Similarity=0.585  Sum_probs=21.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.|+||+|||++|+.|++.+
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc
Confidence            47899999999999999999874

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.84  E-value=0.0019  Score=56.94  Aligned_cols=29  Identities=14%  Similarity=0.195  Sum_probs=25.8

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .++|.++.+.||+|+||||+++.|+..+-
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            56788999999999999999999988753

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.83  E-value=0.00072  Score=53.00  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=21.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++.|.|++|+|||++|+.||+.+
T Consensus         9 ~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            68899999999999999999984

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.82  E-value=0.00068  Score=53.60  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=20.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.|+||+|||++|+.||+.+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            47889999999999999999884

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.80  E-value=0.0012  Score=52.60  Aligned_cols=29  Identities=31%  Similarity=0.574  Sum_probs=25.0

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .++..+.|.|++|+|||++++.+++.+..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~   39 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQK   39 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            35567899999999999999999998754

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.80  E-value=0.00069  Score=52.61  Aligned_cols=21  Identities=29%  Similarity=0.697  Sum_probs=19.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+.+.|+||+|||++|+.| +.
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~   23 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KE   23 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HH
T ss_pred             EEEEECCCCCCHHHHHHHH-HH
Confidence            6789999999999999999 54

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.80  E-value=0.00065  Score=54.72  Aligned_cols=26  Identities=31%  Similarity=0.371  Sum_probs=23.2

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++..+.|.|++|+||||+++.|++.+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999875

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.79  E-value=0.00087  Score=53.83  Aligned_cols=27  Identities=26%  Similarity=0.407  Sum_probs=23.4

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +.+|..+.+.|++|+|||++++.|++.
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            346778999999999999999999875

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.78  E-value=0.00087  Score=54.32  Aligned_cols=26  Identities=15%  Similarity=0.349  Sum_probs=22.5

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++..+.+.||+|+|||++++.|+..+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            34478899999999999999998874

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.78  E-value=0.00083  Score=56.61  Aligned_cols=27  Identities=26%  Similarity=0.501  Sum_probs=23.1

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+|+.+.+.||+|+|||++++.|++.+
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            357789999999999999999999875

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.78  E-value=0.063  Score=46.46  Aligned_cols=27  Identities=30%  Similarity=0.316  Sum_probs=23.8

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      |.++.+.|++|+|||+++..+|..+..
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~  124 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKK  124 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            667888999999999999999988654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.77  E-value=0.0011  Score=52.19  Aligned_cols=26  Identities=23%  Similarity=0.386  Sum_probs=22.4

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++..+.+.|++|+|||++++.++..+
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            34568899999999999999998874

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.76  E-value=0.00086  Score=55.12  Aligned_cols=26  Identities=35%  Similarity=0.544  Sum_probs=22.9

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +++.++|.|+||+|||++|+.|++.+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            44578899999999999999999985

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=96.76  E-value=0.012  Score=47.93  Aligned_cols=17  Identities=24%  Similarity=0.270  Sum_probs=14.3

Q ss_pred             EEEEeecCCChHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTD  125 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~  125 (247)
                      .+++.+|+|+|||.++-
T Consensus        53 ~~lv~~pTGsGKT~~~~   69 (224)
T 1qde_A           53 DVLAQAQSGTGKTGTFS   69 (224)
T ss_dssp             CEEEECCTTSSHHHHHH
T ss_pred             CEEEECCCCCcHHHHHH
Confidence            47889999999998843

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.76  E-value=0.00088  Score=53.42  Aligned_cols=25  Identities=24%  Similarity=0.469  Sum_probs=21.6

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++..+.+.||+|+||||+++.|+..
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            3456889999999999999999775

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.75  E-value=0.024  Score=50.24  Aligned_cols=28  Identities=21%  Similarity=0.488  Sum_probs=24.3

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++..+.+.|+||+|||+++..++..+..
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~  105 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIE  105 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5567899999999999999999988654

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.74  E-value=0.0009  Score=54.58  Aligned_cols=23  Identities=39%  Similarity=0.653  Sum_probs=20.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.|.|+||+||||+|+.|++.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46889999999999999998874

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.74  E-value=0.0049  Score=54.35  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=22.3

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      |..+++.||+|+|||++|+.||+.+
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3468899999999999999999985

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.73  E-value=0.071  Score=48.72  Aligned_cols=29  Identities=17%  Similarity=0.243  Sum_probs=25.4

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+|.++++.|++|+|||+++..||..+..
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~  126 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLRE  126 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45778899999999999999999988755

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.73  E-value=0.0011  Score=54.44  Aligned_cols=25  Identities=24%  Similarity=0.472  Sum_probs=22.1

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +..+.|.||+|+||||+++.|++.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3468899999999999999999875

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.72  E-value=0.0045  Score=54.44  Aligned_cols=25  Identities=12%  Similarity=0.276  Sum_probs=22.0

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +..+++.||||+|||++|..||+.+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            3467889999999999999999875

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.71  E-value=0.00087  Score=54.76  Aligned_cols=23  Identities=39%  Similarity=0.606  Sum_probs=20.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.|.|+||+|||++|+.|++.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46889999999999999998873

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.70  E-value=0.001  Score=51.89  Aligned_cols=23  Identities=30%  Similarity=0.424  Sum_probs=21.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.|.|++|+|||++|+.|++.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999874

>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19

Probab=96.70  E-value=0.021  Score=49.37  Aligned_cols=23  Identities=17%  Similarity=0.222  Sum_probs=18.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+++.+|+|+|||+++-..+...
T Consensus        46 ~~l~~~~TGsGKT~~~~~~~~~~   68 (367)
T 1hv8_A           46 NIVAQARTGSGKTASFAIPLIEL   68 (367)
T ss_dssp             EEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCChHHHHHHHHHHHH
Confidence            57889999999999876654443

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.70  E-value=0.0011  Score=55.59  Aligned_cols=26  Identities=35%  Similarity=0.509  Sum_probs=22.9

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +|..+.+.||+|+||||+++.|++.+
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45678999999999999999999764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.69  E-value=0.00086  Score=54.54  Aligned_cols=26  Identities=19%  Similarity=0.367  Sum_probs=22.9

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++..+.|.||||+|||++++.|++.+
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            45578899999999999999998875

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.69  E-value=0.085  Score=49.18  Aligned_cols=29  Identities=24%  Similarity=0.274  Sum_probs=23.9

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+|.++.+.|++|+|||+++..||..+..
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~  127 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQR  127 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            45778999999999999999999988654

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.69  E-value=0.00097  Score=52.21  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=21.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.|.|++|+|||++|+.|++.+
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999874

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.68  E-value=0.0011  Score=56.14  Aligned_cols=27  Identities=30%  Similarity=0.507  Sum_probs=23.6

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ++..+++.|+||+|||++|+.|++.+.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            455789999999999999999999854

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.65  E-value=0.0011  Score=54.58  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=21.3

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +.++|.||||+||+|.|+.|++.+
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            357889999999999999999983

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.65  E-value=0.0012  Score=55.65  Aligned_cols=27  Identities=26%  Similarity=0.346  Sum_probs=23.8

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+|..+.+.|++|+|||++|+.|++.+
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence            467789999999999999999999974

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.64  E-value=0.0012  Score=52.96  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=21.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.|.|++|+||||+++.|++.+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            47889999999999999999985

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.63  E-value=0.0027  Score=51.77  Aligned_cols=27  Identities=22%  Similarity=0.497  Sum_probs=23.8

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ++..+.+.||+|+||||+++.|+..+.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            455788999999999999999998865

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.62  E-value=0.0013  Score=52.36  Aligned_cols=24  Identities=21%  Similarity=0.380  Sum_probs=21.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+.|.|++|+|||++++.+++.+.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~   25 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLK   25 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            478899999999999999999863

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.62  E-value=0.0013  Score=53.77  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=22.3

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++..+.|.||+|+|||++++.|++.+
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            34568899999999999999998874

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.61  E-value=0.0065  Score=61.34  Aligned_cols=46  Identities=17%  Similarity=0.174  Sum_probs=34.9

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .++|.+..++.+.+.+...      ...+.++.++|+.|+|||++|+.+++.
T Consensus       125 ~~vgR~~~~~~l~~~l~~~------~~~~~~v~i~G~gG~GKTtLa~~~~~~  170 (1249)
T 3sfz_A          125 IFVTRKKLVHAIQQKLWKL------NGEPGWVTIYGMAGCGKSVLAAEAVRD  170 (1249)
T ss_dssp             SCCCCHHHHHHHHHHHHTT------TTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred             eeccHHHHHHHHHHHHhhc------cCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence            3789988888887776532      123447889999999999999888554

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.60  E-value=0.0044  Score=55.01  Aligned_cols=27  Identities=26%  Similarity=0.297  Sum_probs=23.5

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ++..+++.||+|+|||++|..||+.+-
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            455788999999999999999999853

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.59  E-value=0.0015  Score=51.67  Aligned_cols=27  Identities=26%  Similarity=0.422  Sum_probs=23.6

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ++..+.|.|++|+|||++++.+++.+.
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~   30 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLV   30 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            455788999999999999999999864

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19

Probab=96.58  E-value=0.011  Score=47.95  Aligned_cols=23  Identities=17%  Similarity=0.132  Sum_probs=18.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+++.+|+|+|||.++-..+...
T Consensus        53 ~~li~~~TGsGKT~~~~~~~~~~   75 (220)
T 1t6n_A           53 DVLCQAKSGMGKTAVFVLATLQQ   75 (220)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEECCCCCchhhhhhHHHHHh
Confidence            46889999999999877665443

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.58  E-value=0.0015  Score=52.09  Aligned_cols=26  Identities=15%  Similarity=0.350  Sum_probs=22.0

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++..+.|.||+|+|||++++.|+..+
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            33467889999999999999998864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.58  E-value=0.0059  Score=53.19  Aligned_cols=50  Identities=12%  Similarity=0.136  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHhhhccc-----C--CCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694          84 ELAISHICGALKNHFQNRY-----H--NTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus        84 ~~a~~~l~~~l~~~~~~~~-----~--~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +.+.+.+.+.+...+....     +  ..+|-++.+.||+|+||||+++.|+..+..
T Consensus        70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~  126 (302)
T 3b9q_A           70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN  126 (302)
T ss_dssp             HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            3455555566655443211     1  235667899999999999999999988644

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.57  E-value=0.0013  Score=55.62  Aligned_cols=23  Identities=17%  Similarity=0.092  Sum_probs=20.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+++.||||+|||++|+.||+.+
T Consensus         3 li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC
Confidence            47889999999999999999884

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.56  E-value=0.011  Score=52.11  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++++..+
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999997764

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.55  E-value=0.0018  Score=52.82  Aligned_cols=27  Identities=26%  Similarity=0.413  Sum_probs=23.9

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ++..+.+.|++|+|||++++.|++.+.
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            455788999999999999999999875

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.53  E-value=0.0022  Score=52.21  Aligned_cols=89  Identities=13%  Similarity=0.075  Sum_probs=47.6

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeee----------cccccCC-CCChHHHHHHHHHHHHHHHHH
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF----------NSRIHFP-NENHVSLYRLQLTNWIISNVT  175 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~----------~~~l~~~-~~~~v~~~~~~l~~~~~~~l~  175 (247)
                      ....+++||.|+|||+.+-.+++.+..   .+...-++...          .+.+... ....+....     .+...+.
T Consensus         8 g~i~v~~G~mgsGKTT~ll~~a~r~~~---~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~-----~i~~~~~   79 (191)
T 1xx6_A            8 GWVEVIVGPMYSGKSEELIRRIRRAKI---AKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSR-----EILKYFE   79 (191)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEEC-------CEEECTTSCEEECEEESSST-----HHHHHCC
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHH-----HHHHHHh
Confidence            446788999999999999888877544   33211111100          0111000 000000000     1111111


Q ss_pred             hCCCeEEEEeCCCCCChhhHHHHHhhccc
Q psy1694         176 ACDRAIFIFDEVDKFPKGLLDVIIPFIDH  204 (247)
Q Consensus       176 ~~~~~vlilDEiek~~~~~~~~Ll~~Le~  204 (247)
                       .+..+|++||++.++++..+.+..+.+.
T Consensus        80 -~~~dvViIDEaqfl~~~~v~~l~~l~~~  107 (191)
T 1xx6_A           80 -EDTEVIAIDEVQFFDDEIVEIVNKIAES  107 (191)
T ss_dssp             -TTCSEEEECSGGGSCTHHHHHHHHHHHT
T ss_pred             -ccCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence             2468999999999988777766655444

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.51  E-value=0.0016  Score=52.37  Aligned_cols=26  Identities=38%  Similarity=0.457  Sum_probs=22.5

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++..+.|.||+|+|||++++.|+..+
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            34468899999999999999998875

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.50  E-value=0.0017  Score=53.07  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=20.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .++|.|+||+||||+|+.|++.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999874

>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*

Probab=96.49  E-value=0.016  Score=47.96  Aligned_cols=19  Identities=21%  Similarity=0.251  Sum_probs=15.4

Q ss_pred             EEEEeecCCChHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFI  127 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~l  127 (247)
                      .+++.+|+|+|||.++-..
T Consensus        69 ~~li~apTGsGKT~~~~l~   87 (237)
T 3bor_A           69 DVIAQAQSGTGKTATFAIS   87 (237)
T ss_dssp             CEEECCCSSHHHHHHHHHH
T ss_pred             CEEEECCCCCcHHHHHHHH
Confidence            4688999999999875444

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.48  E-value=0.0037  Score=55.89  Aligned_cols=45  Identities=20%  Similarity=0.352  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694          84 ELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus        84 ~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +...+.+.+.+...+..    ++...++|.|++|+|||+++++|++.+.
T Consensus         5 ~~L~~~il~~l~~~i~~----g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A            5 HKLADDVLQLLDNRIED----NYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHHHHHHHHHHTTTT----CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc----CCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            33444455555443322    2233588899999999999999999863

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.48  E-value=0.0084  Score=64.14  Aligned_cols=27  Identities=15%  Similarity=0.260  Sum_probs=23.1

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +-+++++||||||||++|..++.....
T Consensus      1081 g~~vll~G~~GtGKT~la~~~~~ea~k 1107 (2050)
T 3cmu_A         1081 GRIVEIYGPESSGKTTLTLQVIAAAQR 1107 (2050)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999877555

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.47  E-value=0.051  Score=50.59  Aligned_cols=29  Identities=17%  Similarity=0.289  Sum_probs=24.7

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .++-++.|.|++|+||||+++.|+..+..
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~  319 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQFEQ  319 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence            35668999999999999999999987643

>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}

Probab=96.47  E-value=0.0096  Score=47.82  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=20.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+++.+|+|+|||.++...+..+.
T Consensus        50 ~~li~~~tGsGKT~~~~~~~~~~~   73 (216)
T 3b6e_A           50 NIIICLPTGSGKTRVAVYIAKDHL   73 (216)
T ss_dssp             CEEEECSCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHH
Confidence            468899999999999988876643

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=96.47  E-value=0.0025  Score=61.09  Aligned_cols=25  Identities=36%  Similarity=0.472  Sum_probs=19.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ..+++||||||||++.-.+..++..
T Consensus       207 ~~lI~GPPGTGKT~ti~~~I~~l~~  231 (646)
T 4b3f_X          207 LAIIHGPPGTGKTTTVVEIILQAVK  231 (646)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHh
Confidence            4688999999999877666555554

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.47  E-value=0.0059  Score=53.43  Aligned_cols=23  Identities=17%  Similarity=0.312  Sum_probs=20.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+++.||||+|||++|..++...
T Consensus       109 i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          109 MTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHhHHHHHHHHHH
Confidence            68899999999999999998774

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.44  E-value=0.002  Score=52.74  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=21.9

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~  129 (247)
                      +|..+.|.|++|+|||++++.|++
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            566889999999999999999987

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.42  E-value=0.0021  Score=51.64  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=21.2

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHH
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +..+.|.||+|+||||+++.|+..
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhh
Confidence            346788999999999999999887

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.41  E-value=0.0019  Score=53.30  Aligned_cols=23  Identities=22%  Similarity=0.392  Sum_probs=20.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .++|.|+||+||||+|+.|++.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999874

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.41  E-value=0.0024  Score=51.81  Aligned_cols=26  Identities=19%  Similarity=0.420  Sum_probs=22.8

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++..+.+.||+|+||||+++.|+..+
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~   30 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTL   30 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence            45578899999999999999998874

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.40  E-value=0.0087  Score=53.50  Aligned_cols=29  Identities=21%  Similarity=0.281  Sum_probs=24.9

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+|-++.+.||+|+||||+++.|+..+..
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~  183 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN  183 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence            35668999999999999999999988643

>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}

Probab=96.40  E-value=0.023  Score=47.51  Aligned_cols=19  Identities=21%  Similarity=0.086  Sum_probs=15.3

Q ss_pred             EEEEeecCCChHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFI  127 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~l  127 (247)
                      .+++.+|+|+|||.++-..
T Consensus        82 ~~lv~a~TGsGKT~~~~~~  100 (249)
T 3ber_A           82 DIIGLAETGSGKTGAFALP  100 (249)
T ss_dssp             CEEEECCTTSCHHHHHHHH
T ss_pred             CEEEEcCCCCCchhHhHHH
Confidence            4788999999999876433

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=96.40  E-value=0.0026  Score=58.49  Aligned_cols=26  Identities=12%  Similarity=0.101  Sum_probs=22.7

Q ss_pred             CeEEEEeCCCCCChhhHHHHHhhccc
Q psy1694         179 RAIFIFDEVDKFPKGLLDVIIPFIDH  204 (247)
Q Consensus       179 ~~vlilDEiek~~~~~~~~Ll~~Le~  204 (247)
                      ..++|+||+..++++.+..++..+..
T Consensus       235 ~d~liiDE~sm~~~~~l~~l~~~~~~  260 (446)
T 3vkw_A          235 FKRLFIDEGLMLHTGCVNFLVEMSLC  260 (446)
T ss_dssp             CSEEEEETGGGSCHHHHHHHHHHTTC
T ss_pred             CCEEEEeCcccCCHHHHHHHHHhCCC
Confidence            68999999999999999888877654

>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19

Probab=96.39  E-value=0.023  Score=46.22  Aligned_cols=19  Identities=21%  Similarity=0.162  Sum_probs=15.3

Q ss_pred             EEEEeecCCChHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFI  127 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~l  127 (247)
                      .+++.+|+|+|||.++-..
T Consensus        43 ~~lv~a~TGsGKT~~~~~~   61 (219)
T 1q0u_A           43 SMVGQSQTGTGKTHAYLLP   61 (219)
T ss_dssp             CEEEECCSSHHHHHHHHHH
T ss_pred             CEEEECCCCChHHHHHHHH
Confidence            4688999999999875444

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.37  E-value=0.0023  Score=55.03  Aligned_cols=26  Identities=23%  Similarity=0.459  Sum_probs=23.1

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHH
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~  129 (247)
                      +.+|..+.+.|++|+|||++|+.|++
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            45677899999999999999999984

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.32  E-value=0.0027  Score=51.12  Aligned_cols=23  Identities=17%  Similarity=0.453  Sum_probs=21.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.|++|+|||++++.|++.+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            68899999999999999999874

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.30  E-value=0.0041  Score=55.74  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=21.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+++.||+|+||||+.++++..+.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcC
Confidence            688999999999999999998754

>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}

Probab=96.30  E-value=0.029  Score=46.30  Aligned_cols=19  Identities=16%  Similarity=0.226  Sum_probs=15.3

Q ss_pred             EEEEeecCCChHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFI  127 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~l  127 (247)
                      .+++.+|+|+|||.++-..
T Consensus        68 ~~l~~a~TGsGKT~~~~l~   86 (245)
T 3dkp_A           68 ELLASAPTGSGKTLAFSIP   86 (245)
T ss_dssp             CEEEECCTTSCHHHHHHHH
T ss_pred             CEEEECCCCCcHHHHHHHH
Confidence            4688999999999876443

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.28  E-value=0.0021  Score=52.04  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=19.8

Q ss_pred             eEEEEeecCCChHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~  129 (247)
                      ..+.|.|++|+||||+++.+++
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999977

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.24  E-value=0.0026  Score=50.76  Aligned_cols=22  Identities=18%  Similarity=0.301  Sum_probs=19.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+.|.||+|+||||+++.|+..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            5788999999999999999874

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.24  E-value=0.0034  Score=52.36  Aligned_cols=27  Identities=22%  Similarity=0.378  Sum_probs=23.8

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .++..+.|.|++|+||||+++.|++.+
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l   50 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRL   50 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            356678999999999999999999985

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.23  E-value=0.0035  Score=53.21  Aligned_cols=23  Identities=30%  Similarity=0.557  Sum_probs=21.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.|.|++|+|||++++.|++.+
T Consensus        50 ~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           50 SMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            57899999999999999999974

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.23  E-value=0.0026  Score=54.55  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=21.5

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHH
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      |..+++.|+||+|||++|+.|++.
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            456889999999999999999885

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.21  E-value=0.0085  Score=52.09  Aligned_cols=29  Identities=17%  Similarity=0.218  Sum_probs=24.7

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ..++..+.+.||+|+||||+++.|+..+-
T Consensus        77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           77 QRIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34667889999999999999999988753

>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1

Probab=96.21  E-value=0.061  Score=54.98  Aligned_cols=25  Identities=24%  Similarity=0.053  Sum_probs=20.2

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +|..++++||+|+|||.+|-..+-.
T Consensus       623 ~p~d~ll~~~TGsGKT~val~aa~~  647 (1151)
T 2eyq_A          623 LAMDRLVCGDVGFGKTEVAMRAAFL  647 (1151)
T ss_dssp             SCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred             CcCcEEEECCCCCCHHHHHHHHHHH
Confidence            5667899999999999998655444

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.20  E-value=0.0033  Score=52.21  Aligned_cols=28  Identities=25%  Similarity=0.494  Sum_probs=23.9

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +.++..+.+.|++|+|||++++.|++.+
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4566678999999999999999999864

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.19  E-value=0.0027  Score=51.84  Aligned_cols=26  Identities=31%  Similarity=0.533  Sum_probs=22.5

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +|..+.+.|++|+|||++++.+++.+
T Consensus         2 ~~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc
Confidence            35578999999999999999999874

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.19  E-value=0.015  Score=51.31  Aligned_cols=25  Identities=16%  Similarity=0.131  Sum_probs=21.4

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ...+.+.||||+|||++|..++...
T Consensus       122 G~i~~I~G~~GsGKTtla~~la~~~  146 (343)
T 1v5w_A          122 MAITEAFGEFRTGKTQLSHTLCVTA  146 (343)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3368899999999999999998763

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.18  E-value=0.0031  Score=51.05  Aligned_cols=26  Identities=19%  Similarity=0.445  Sum_probs=22.4

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++..+.+.|++|+|||++++.|++.+
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            45578899999999999999998763

>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23

Probab=96.18  E-value=0.018  Score=48.97  Aligned_cols=23  Identities=9%  Similarity=0.183  Sum_probs=18.9

Q ss_pred             EEEeecCCChHHHHHHHHHHHhh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .++.+|+|+|||.++-.++....
T Consensus       131 ~ll~~~tGsGKT~~~~~~~~~~~  153 (282)
T 1rif_A          131 RILNLPTSAGRSLIQALLARYYL  153 (282)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEcCCCCCcHHHHHHHHHHHH
Confidence            36799999999999988776644

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.18  E-value=0.046  Score=47.23  Aligned_cols=28  Identities=21%  Similarity=0.131  Sum_probs=24.0

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++.++.+.|++|+|||+++..+|..+..
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~  124 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKG  124 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4567888899999999999999988654

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.17  E-value=0.0033  Score=52.99  Aligned_cols=25  Identities=28%  Similarity=0.477  Sum_probs=21.6

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +..+.|.||+|+|||++++.|++.+
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhc
Confidence            3468899999999999999999653

>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}

Probab=96.15  E-value=0.025  Score=48.79  Aligned_cols=52  Identities=19%  Similarity=0.230  Sum_probs=28.5

Q ss_pred             eEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHHHH
Q psy1694         180 AIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRK  238 (247)
Q Consensus       180 ~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~~~  238 (247)
                      .+|||||+|.|..  .....+..++..-+       ++.-+++.|-+-++.+.+.+..++.
T Consensus       237 ~~lVlDEad~l~~~~~~~~~~~~i~~~~~-------~~~q~i~~SAT~~~~v~~~a~~~l~  290 (300)
T 3fmo_B          237 KVFVLDEADVMIATQGHQDQSIRIQRMLP-------RNCQMLLFSATFEDSVWKFAQKVVP  290 (300)
T ss_dssp             SEEEETTHHHHHHSTTHHHHHHHHHTTSC-------TTCEEEEEESCCCHHHHHHHHHHSS
T ss_pred             eEEEEeCHHHHhhccCcHHHHHHHHHhCC-------CCCEEEEEeccCCHHHHHHHHHHCC
Confidence            8999999998753  33333333333211       2334555555555566655544443

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.14  E-value=0.023  Score=45.81  Aligned_cols=27  Identities=15%  Similarity=0.257  Sum_probs=22.2

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ++..+++.|++|+|||++...+....+
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~   37 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDSV   37 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            345689999999999999999976543

>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A

Probab=96.14  E-value=0.032  Score=46.12  Aligned_cols=19  Identities=16%  Similarity=0.085  Sum_probs=15.4

Q ss_pred             EEEEeecCCChHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFI  127 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~l  127 (247)
                      .+++.+|+|+|||.++-..
T Consensus        68 ~~l~~apTGsGKT~~~~l~   86 (242)
T 3fe2_A           68 DMVGVAQTGSGKTLSYLLP   86 (242)
T ss_dssp             CEEEEECTTSCHHHHHHHH
T ss_pred             CEEEECCCcCHHHHHHHHH
Confidence            4688999999999886543

>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*

Probab=96.13  E-value=0.026  Score=49.29  Aligned_cols=20  Identities=20%  Similarity=0.305  Sum_probs=16.4

Q ss_pred             EEEEeecCCChHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIV  128 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la  128 (247)
                      .+++.+|+|+|||.++-..+
T Consensus        46 ~~lv~a~TGsGKT~~~~~~~   65 (395)
T 3pey_A           46 NMIAQSQSGTGKTAAFSLTM   65 (395)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            57889999999999876543

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.09  E-value=0.0035  Score=50.52  Aligned_cols=21  Identities=33%  Similarity=0.463  Sum_probs=19.5

Q ss_pred             EEEEeecCCChHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~  129 (247)
                      .+.+.|++|+|||++++.|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            478899999999999999988

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.09  E-value=0.027  Score=50.96  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=19.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+.|.||||+|||+++..++-.
T Consensus       180 i~~I~G~sGsGKTTLl~~la~~  201 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLAVT  201 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHHHH
Confidence            6889999999999999977644

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.07  E-value=0.018  Score=60.75  Aligned_cols=76  Identities=9%  Similarity=0.083  Sum_probs=45.4

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc----------------cccCCCCChHHHHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS----------------RIHFPNENHVSLYRLQLTNWII  171 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~----------------~l~~~~~~~v~~~~~~l~~~~~  171 (247)
                      -.+++.||||+|||++|..++..+..   .+.  +...+...                .+....+....    ++...+.
T Consensus       733 ~lVlI~G~PG~GKTtLal~lA~~aa~---~g~--~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~le----ei~~~l~  803 (1706)
T 3cmw_A          733 RIVEIYGPESSGKTTLTLQVIAAAQR---EGK--TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE----QALEICD  803 (1706)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHH---TTC--CEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHH----HHHHHHH
T ss_pred             ceEEEECCCCCCcHHHHHHHHHHHHH---cCC--CeEEEeccchHHHHHHHHcCCChhheEEecCCcHH----HHHHHHH
Confidence            36899999999999999999888654   321  22222211                11111111212    2233343


Q ss_pred             HHHHhCCCeEEEEeCCCCCCh
Q psy1694         172 SNVTACDRAIFIFDEVDKFPK  192 (247)
Q Consensus       172 ~~l~~~~~~vlilDEiek~~~  192 (247)
                      ..+.....++||+|+++.+.+
T Consensus       804 ~lv~~~~~~lVVIDsLq~l~~  824 (1706)
T 3cmw_A          804 ALARSGAVDVIVVDSVAALTP  824 (1706)
T ss_dssp             HHHHHTCCSEEEESCSTTCCC
T ss_pred             HHHHccCCCEEEEechhhhcc
Confidence            444456678999999999873

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.04  E-value=0.0024  Score=51.69  Aligned_cols=24  Identities=21%  Similarity=0.452  Sum_probs=21.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+.|.|++|+||||+++.|++.+-
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            478899999999999999999864

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.00  E-value=0.0051  Score=50.41  Aligned_cols=25  Identities=20%  Similarity=0.413  Sum_probs=21.8

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++..+.|.||+|+|||++++.|.+.
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhh
Confidence            4456788999999999999999876

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.99  E-value=0.0045  Score=51.54  Aligned_cols=26  Identities=15%  Similarity=0.273  Sum_probs=23.5

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +|..+.+.|++|+|||++++.|++.+
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            46678999999999999999999985

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.99  E-value=0.027  Score=51.13  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=21.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||||+|||++|..||+.+
T Consensus         4 ~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            4 VIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHH
T ss_pred             EEEEECcchhhHHHHHHHHHHHC
Confidence            57889999999999999999985

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=95.98  E-value=0.0052  Score=51.38  Aligned_cols=26  Identities=23%  Similarity=0.408  Sum_probs=22.7

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++..+-+.||+|+||||+++.|+..+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            44578899999999999999998874

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=95.97  E-value=0.032  Score=46.25  Aligned_cols=86  Identities=14%  Similarity=0.062  Sum_probs=46.1

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHH------------HHHH
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWI------------ISNV  174 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~------------~~~l  174 (247)
                      ....+++||.|+|||+.+-.++.....   .+..   |.+..+..+....      ...+...+            .+.+
T Consensus        28 G~l~vitG~MgsGKTT~lL~~a~r~~~---~g~k---Vli~k~~~d~R~g------e~~i~s~~g~~~~a~~~~~~~~~~   95 (214)
T 2j9r_A           28 GWIEVICGSMFSGKSEELIRRVRRTQF---AKQH---AIVFKPCIDNRYS------EEDVVSHNGLKVKAVPVSASKDIF   95 (214)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHH---TTCC---EEEEECC-----------------------CCEEECSSGGGGG
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHH---CCCE---EEEEEeccCCcch------HHHHHhhcCCeeEEeecCCHHHHH
Confidence            345678999999999999888777544   3321   2222111110000      00000000            0111


Q ss_pred             HhC--CCeEEEEeCCCCCChhhHHHHHhhccc
Q psy1694         175 TAC--DRAIFIFDEVDKFPKGLLDVIIPFIDH  204 (247)
Q Consensus       175 ~~~--~~~vlilDEiek~~~~~~~~Ll~~Le~  204 (247)
                      ...  +..+|++||++-++++..+.+..+.+.
T Consensus        96 ~~~~~~~dvViIDEaQF~~~~~V~~l~~l~~~  127 (214)
T 2j9r_A           96 KHITEEMDVIAIDEVQFFDGDIVEVVQVLANR  127 (214)
T ss_dssp             GGCCSSCCEEEECCGGGSCTTHHHHHHHHHHT
T ss_pred             HHHhcCCCEEEEECcccCCHHHHHHHHHHhhC
Confidence            111  368999999999998877666554443

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.96  E-value=0.003  Score=54.71  Aligned_cols=27  Identities=26%  Similarity=0.258  Sum_probs=20.6

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ++..+.+.||+|+||||+|+.+++.+-
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            556789999999999999999998753

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.94  E-value=0.014  Score=51.10  Aligned_cols=28  Identities=14%  Similarity=0.222  Sum_probs=24.5

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .++..+.+.||+|+||||+++.|+..+-
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            4666788999999999999999988864

>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A

Probab=95.94  E-value=0.044  Score=47.99  Aligned_cols=22  Identities=18%  Similarity=0.167  Sum_probs=17.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+++.+|+|+|||.++-..+-.
T Consensus        47 ~~lv~a~TGsGKT~~~~~~~~~   68 (391)
T 1xti_A           47 DVLCQAKSGMGKTAVFVLATLQ   68 (391)
T ss_dssp             CEEEECSSCSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHHHH
Confidence            4688999999999887655444

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.93  E-value=0.26  Score=44.87  Aligned_cols=28  Identities=21%  Similarity=0.131  Sum_probs=24.5

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +|.++.+.|++|+|||+++..+|..+..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~  124 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKG  124 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5667888999999999999999998654

>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B

Probab=95.93  E-value=0.047  Score=48.07  Aligned_cols=18  Identities=22%  Similarity=0.263  Sum_probs=15.3

Q ss_pred             EEEEeecCCChHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDF  126 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~  126 (247)
                      .+++.+|+|+|||.++-.
T Consensus        66 ~~lv~apTGsGKT~~~~~   83 (412)
T 3fht_A           66 NLIAQSQSGTGKTAAFVL   83 (412)
T ss_dssp             CEEEECCTTSCHHHHHHH
T ss_pred             eEEEECCCCchHHHHHHH
Confidence            578899999999998644

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.88  E-value=0.0035  Score=57.01  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=22.0

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +|..+++.|+||+|||++|+.+++.
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            4667899999999999999999765

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=95.84  E-value=0.039  Score=48.64  Aligned_cols=25  Identities=24%  Similarity=0.166  Sum_probs=20.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+++.||||+|||+++-.++.....
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~~~   54 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSYMR   54 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4789999999999998777666443

>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}

Probab=95.80  E-value=0.051  Score=49.88  Aligned_cols=24  Identities=8%  Similarity=0.167  Sum_probs=19.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ..+++||+|+|||.++-.++....
T Consensus       130 ~~ll~~~tGsGKT~~~~~~~~~~~  153 (510)
T 2oca_A          130 RRILNLPTSAGRSLIQALLARYYL  153 (510)
T ss_dssp             EEEEECCSTTTHHHHHHHHHHHHH
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHH
Confidence            468899999999999977766644

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.79  E-value=0.011  Score=53.07  Aligned_cols=26  Identities=15%  Similarity=0.133  Sum_probs=22.4

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++..+.+.||+|+|||+++++++..+
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            34478899999999999999998863

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.79  E-value=0.0054  Score=49.73  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=20.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.|.||+|+|||++.+.|...+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            56889999999999999998764

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.78  E-value=0.0065  Score=49.35  Aligned_cols=23  Identities=30%  Similarity=0.541  Sum_probs=21.1

Q ss_pred             eEEEEeecCCChHHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ..+.++|++|+|||++++.+++.
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            36889999999999999999987

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=95.76  E-value=0.0076  Score=56.55  Aligned_cols=45  Identities=18%  Similarity=0.249  Sum_probs=34.2

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHH
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~  129 (247)
                      .++|.+..++.+.+.+...      ...+.++.++||+|+|||++|+.+++
T Consensus       125 ~~vGR~~~l~~L~~~L~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          125 VFVTRKKLVNAIQQKLSKL------KGEPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             SCCCCHHHHHHHHHHHTTS------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             eecccHHHHHHHHHHHhcc------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence            4889888888887766532      11234788999999999999998864

>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*

Probab=95.73  E-value=0.052  Score=47.50  Aligned_cols=19  Identities=21%  Similarity=0.246  Sum_probs=15.2

Q ss_pred             EEEEeecCCChHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFI  127 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~l  127 (247)
                      .+++.+|+|+|||.++-..
T Consensus        60 ~~lv~~~TGsGKT~~~~~~   78 (394)
T 1fuu_A           60 DVLAQAQSGTGKTGTFSIA   78 (394)
T ss_dssp             CEEECCCSSHHHHHHHHHH
T ss_pred             CEEEECCCCChHHHHHHHH
Confidence            3688999999999885443

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.71  E-value=0.012  Score=55.15  Aligned_cols=62  Identities=8%  Similarity=0.053  Sum_probs=40.3

Q ss_pred             ccccHHHHHHHHHhh-----cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694          65 QSSNVRVLEEQLKQH-----VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus        65 ~~~~~~~L~~~L~~~-----l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ....-..+++.|++.     .+-...+.+.+++.....      .+++.++.|.|.+|+|||++|++||+.|.
T Consensus       354 ~~iSgt~IR~~Lr~G~~~P~~f~rpeV~~vLr~~~~~~------~~~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          354 LNISGTELRRRLRVGGEIPEWFSYPEVVKILRESNPPR------PKQGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             BCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHHHHSCCG------GGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             cccCHHHHHHHHhCCCCCCccccChhhHHHHHHhcccc------cccceEEEecccCCCCHHHHHHHHHHHHH
Confidence            344456677777663     334444444444322111      23556899999999999999999999974

>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}

Probab=95.70  E-value=0.036  Score=45.20  Aligned_cols=19  Identities=21%  Similarity=0.195  Sum_probs=15.5

Q ss_pred             EEEEeecCCChHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFI  127 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~l  127 (247)
                      .+++.+|+|+|||.++-..
T Consensus        59 ~~l~~apTGsGKT~~~~l~   77 (228)
T 3iuy_A           59 DLIVVAQTGTGKTLSYLMP   77 (228)
T ss_dssp             CEEEECCTTSCHHHHHHHH
T ss_pred             CEEEECCCCChHHHHHHHH
Confidence            4688999999999876543

>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*

Probab=95.65  E-value=0.044  Score=44.93  Aligned_cols=18  Identities=28%  Similarity=0.388  Sum_probs=14.7

Q ss_pred             EEEEeecCCChHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDF  126 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~  126 (247)
                      .+++.+|+|+|||.++-.
T Consensus        63 ~~l~~a~TGsGKT~~~~l   80 (230)
T 2oxc_A           63 DLIVQAKSGTGKTCVFST   80 (230)
T ss_dssp             CEEEECCTTSSHHHHHHH
T ss_pred             CEEEECCCCCcHHHHHHH
Confidence            468899999999987543

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.64  E-value=0.073  Score=46.26  Aligned_cols=25  Identities=12%  Similarity=0.099  Sum_probs=22.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+++.|+||+|||++|..++.+...
T Consensus        70 l~li~G~pG~GKTtl~l~ia~~~a~   94 (315)
T 3bh0_A           70 FVLIAARPSMGKTAFALKQAKNMSD   94 (315)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            6889999999999999999877554

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.64  E-value=0.0086  Score=52.20  Aligned_cols=28  Identities=18%  Similarity=0.188  Sum_probs=24.2

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +|-++.+.||+|+||||+++.|+..+-.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~  128 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN  128 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            4667899999999999999999988644

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.63  E-value=0.0071  Score=47.76  Aligned_cols=21  Identities=24%  Similarity=0.324  Sum_probs=17.8

Q ss_pred             CCeEEEEeecCCChHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDF  126 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~  126 (247)
                      ++-.+.+.||+|+||||+++.
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHH
Confidence            344688999999999999993

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.61  E-value=0.0079  Score=56.34  Aligned_cols=26  Identities=27%  Similarity=0.576  Sum_probs=23.7

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .|.++++.|.||+|||++|+.|++.+
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L   59 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYL   59 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56688999999999999999999986

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.60  E-value=0.009  Score=49.33  Aligned_cols=28  Identities=25%  Similarity=0.503  Sum_probs=24.3

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++..+.|.|++|+|||+.++.|++.+-.
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            3456889999999999999999999754

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.56  E-value=0.0082  Score=48.77  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=21.4

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      -.+.|.||+|+|||+++++|+..+
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            367889999999999999998875

>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A

Probab=95.55  E-value=0.24  Score=43.39  Aligned_cols=22  Identities=23%  Similarity=0.111  Sum_probs=17.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+++.+|+|+|||.++-..+-.
T Consensus        60 ~~li~a~TGsGKT~~~~~~~~~   81 (400)
T 1s2m_A           60 DILARAKNGTGKTAAFVIPTLE   81 (400)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEECCCCcHHHHHHHHHHHH
Confidence            3688999999999877655443

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.53  E-value=0.0082  Score=53.28  Aligned_cols=24  Identities=17%  Similarity=0.260  Sum_probs=21.8

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ..+.+.||+|+|||++|+.||+.+
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l   31 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKF   31 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHc
Confidence            368899999999999999999985

>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}

Probab=95.49  E-value=0.056  Score=49.26  Aligned_cols=18  Identities=22%  Similarity=0.263  Sum_probs=15.4

Q ss_pred             EEEEeecCCChHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDF  126 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~  126 (247)
                      .+++.+|||+|||.++-.
T Consensus       133 ~~l~~a~TGsGKT~~~~l  150 (479)
T 3fmp_B          133 NLIAQSQSGTGKTAAFVL  150 (479)
T ss_dssp             EEEEECCSSSSHHHHHHH
T ss_pred             cEEEEcCCCCchhHHHHH
Confidence            689999999999988543

>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}

Probab=95.48  E-value=0.077  Score=44.60  Aligned_cols=19  Identities=16%  Similarity=0.135  Sum_probs=15.5

Q ss_pred             EEEEeecCCChHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFI  127 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~l  127 (247)
                      .+++.+|+|+|||.++...
T Consensus        93 ~~lv~a~TGsGKT~~~~l~  111 (262)
T 3ly5_A           93 DLLAAAKTGSGKTLAFLIP  111 (262)
T ss_dssp             CCEECCCTTSCHHHHHHHH
T ss_pred             cEEEEccCCCCchHHHHHH
Confidence            4688999999999986544

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.48  E-value=0.0079  Score=49.53  Aligned_cols=23  Identities=17%  Similarity=0.411  Sum_probs=20.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.|.||+|+|||++++.|+..+
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            57889999999999999998864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=95.48  E-value=0.0055  Score=50.57  Aligned_cols=24  Identities=21%  Similarity=0.389  Sum_probs=15.7

Q ss_pred             CeEEEEeecCCChHHHHHHHHH-HH
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIV-SS  130 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la-~~  130 (247)
                      +..+.|.||+|+|||++++.|+ ..
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC--
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcC
Confidence            3467889999999999999998 65

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.45  E-value=0.015  Score=54.91  Aligned_cols=28  Identities=18%  Similarity=0.510  Sum_probs=24.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++..+.|.|++|+||||++++|+..+..
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~  395 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLME  395 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence            3447889999999999999999998753

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=95.43  E-value=0.01  Score=48.44  Aligned_cols=24  Identities=17%  Similarity=0.267  Sum_probs=22.0

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .++.+.|++|+|||++++.||+.|
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~l   30 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHY   30 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHh
Confidence            378899999999999999999985

>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}

Probab=95.42  E-value=0.07  Score=45.49  Aligned_cols=20  Identities=15%  Similarity=0.307  Sum_probs=16.3

Q ss_pred             EEEEeecCCChHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIV  128 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la  128 (247)
                      .+++.+|+|+|||.++-..+
T Consensus        33 ~~lv~~~TGsGKT~~~~~~~   52 (337)
T 2z0m_A           33 NVVVRAKTGSGKTAAYAIPI   52 (337)
T ss_dssp             CEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEcCCCCcHHHHHHHHH
Confidence            46889999999998876553

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.41  E-value=0.0089  Score=48.43  Aligned_cols=21  Identities=29%  Similarity=0.479  Sum_probs=18.6

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++|.||+|+||+++++.|.+.
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            478999999999999998765

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.39  E-value=0.0036  Score=52.92  Aligned_cols=27  Identities=22%  Similarity=0.293  Sum_probs=23.3

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .++..+.|.|++|+||||+++.|++.+
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            356678999999999999999998875

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.36  E-value=0.012  Score=49.51  Aligned_cols=28  Identities=29%  Similarity=0.495  Sum_probs=24.6

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++..+.|.|++|+|||+.++.+++.+-.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~   53 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ   53 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4557899999999999999999998754

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.36  E-value=0.013  Score=48.93  Aligned_cols=28  Identities=18%  Similarity=0.445  Sum_probs=24.5

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .++..+.|.|++|+|||++++.+++.+-
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3566789999999999999999999863

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.35  E-value=0.011  Score=48.09  Aligned_cols=23  Identities=17%  Similarity=0.312  Sum_probs=20.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+|||++++.++..+
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999998764

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.34  E-value=0.0088  Score=49.24  Aligned_cols=24  Identities=25%  Similarity=0.279  Sum_probs=21.0

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ..++|.||||+|||++|..+++..
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            368999999999999999997763

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.33  E-value=0.013  Score=45.98  Aligned_cols=23  Identities=30%  Similarity=0.426  Sum_probs=21.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.|.||.|+|||++.+.|+..+
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            68899999999999999999987

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=95.32  E-value=0.1  Score=45.95  Aligned_cols=28  Identities=29%  Similarity=0.552  Sum_probs=23.5

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +...+.+.||||+|||++.+.++..+..
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~   81 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALGSLLTA   81 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            4447889999999999999999887643

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.31  E-value=0.015  Score=46.48  Aligned_cols=26  Identities=15%  Similarity=0.209  Sum_probs=22.8

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .++.+.|++|+|||+++..++..+-.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~   30 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVR   30 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence            36889999999999999999988654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.31  E-value=0.0099  Score=49.68  Aligned_cols=28  Identities=18%  Similarity=0.417  Sum_probs=21.4

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++..+.|.|++|+|||+.++.|++.+-.
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~   51 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQE   51 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5567899999999999999999998744

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}

Probab=95.30  E-value=0.099  Score=46.08  Aligned_cols=20  Identities=20%  Similarity=0.290  Sum_probs=15.9

Q ss_pred             EEEEeecCCChHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIV  128 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la  128 (247)
                      .+++.+|+|+|||+++-..+
T Consensus        79 ~~lv~a~TGsGKT~~~~~~~   98 (414)
T 3eiq_A           79 DVIAQAQSGTGKTATFAISI   98 (414)
T ss_dssp             CEEECCCSCSSSHHHHHHHH
T ss_pred             CEEEECCCCCcccHHHHHHH
Confidence            36889999999999865443

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=95.28  E-value=0.014  Score=48.40  Aligned_cols=27  Identities=22%  Similarity=0.348  Sum_probs=23.7

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ++..+.|.|++|+|||+.++.+++.+-
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            455788999999999999999999863

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.26  E-value=0.013  Score=56.12  Aligned_cols=29  Identities=24%  Similarity=0.336  Sum_probs=25.8

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+|..++|.|.+|+|||++|+.|++.+..
T Consensus        50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~   78 (630)
T 1x6v_B           50 FRGCTVWLTGLSGAGKTTVSMALEEYLVC   78 (630)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            46778999999999999999999999754

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A

Probab=95.17  E-value=0.03  Score=50.86  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=17.1

Q ss_pred             EEEEeecCCChHHHHH-HHHHHH
Q psy1694         109 AISLHGLPGTGKNYVT-DFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A-~~la~~  130 (247)
                      ++++.||+|+|||.++ ..+.+.
T Consensus         4 ~~lv~a~TGsGKT~~~l~~~l~~   26 (431)
T 2v6i_A            4 LTVLDLHPGAGKTRRVLPQLVRE   26 (431)
T ss_dssp             EEEEECCTTSCTTTTHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            6789999999999987 444433

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.14  E-value=0.014  Score=55.38  Aligned_cols=29  Identities=21%  Similarity=0.369  Sum_probs=25.5

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+|..+.|.|.+|+|||++|+.|++.+..
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~  422 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLNQ  422 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence            36678999999999999999999998763

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.08  E-value=0.015  Score=48.15  Aligned_cols=25  Identities=12%  Similarity=0.212  Sum_probs=21.5

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +..+.+.||+|+|||++.+.|+..+
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccC
Confidence            3367889999999999999998874

>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19

Probab=95.07  E-value=0.12  Score=50.64  Aligned_cols=25  Identities=28%  Similarity=0.433  Sum_probs=19.6

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .|..+++.||+|+|||.++-..+-.
T Consensus       388 ~~~~~Ll~a~TGSGKTlvall~il~  412 (780)
T 1gm5_A          388 KPMNRLLQGDVGSGKTVVAQLAILD  412 (780)
T ss_dssp             SCCCCEEECCSSSSHHHHHHHHHHH
T ss_pred             CCCcEEEEcCCCCCHHHHHHHHHHH
Confidence            4456799999999999998665444

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=95.06  E-value=0.017  Score=47.74  Aligned_cols=27  Identities=26%  Similarity=0.489  Sum_probs=23.8

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +..+.|.|++|+|||+.++.+++.+-.
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~   29 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQ   29 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            346889999999999999999999755

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=95.06  E-value=0.018  Score=47.90  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=23.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++.++.+.|++|+|||++|+.||+.+
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~l   38 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEEL   38 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHc
Confidence            34578999999999999999999985

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=94.98  E-value=0.015  Score=47.06  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=21.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+.+.||+|+|||++.+.++..+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhcc
Confidence            467899999999999999998863

>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A

Probab=94.97  E-value=0.14  Score=45.23  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=17.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+++.+|+|+|||.++-..+-.
T Consensus        76 ~~lv~a~TGsGKT~~~~~~~~~   97 (410)
T 2j0s_A           76 DVIAQSQSGTGKTATFSISVLQ   97 (410)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCchHHHHHHHHH
Confidence            4688999999999887655433

>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*

Probab=94.92  E-value=0.14  Score=46.49  Aligned_cols=23  Identities=17%  Similarity=0.151  Sum_probs=19.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ..++.+|+|+|||.++-.++..+
T Consensus       110 ~~ll~~~TGsGKT~~~l~~i~~~  132 (472)
T 2fwr_A          110 RGCIVLPTGSGKTHVAMAAINEL  132 (472)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHc
Confidence            36889999999999997776653

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=94.87  E-value=0.11  Score=51.01  Aligned_cols=19  Identities=21%  Similarity=0.295  Sum_probs=16.0

Q ss_pred             EEEEeecCCChHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFI  127 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~l  127 (247)
                      ++++.||+|+|||++...+
T Consensus       111 ~vii~gpTGSGKTtllp~l  129 (773)
T 2xau_A          111 IMVFVGETGSGKTTQIPQF  129 (773)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHH
Confidence            6789999999999965555

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=94.86  E-value=0.19  Score=50.24  Aligned_cols=23  Identities=13%  Similarity=-0.061  Sum_probs=19.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||.|+|||++.+.++-..
T Consensus       664 i~~ItGpNGsGKSTlLr~ial~~  686 (934)
T 3thx_A          664 FHIITGPNMGGKSTYIRQTGVIV  686 (934)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999996543

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=94.72  E-value=0.036  Score=52.21  Aligned_cols=28  Identities=21%  Similarity=0.522  Sum_probs=24.5

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++..+.|.|++|+|||++|+.|++.+..
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~  398 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQA  398 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence            4567899999999999999999998654

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=94.69  E-value=0.035  Score=52.96  Aligned_cols=25  Identities=32%  Similarity=0.489  Sum_probs=20.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ..+++||||||||+++..+...+..
T Consensus       197 ~~li~GppGTGKT~~~~~~i~~l~~  221 (624)
T 2gk6_A          197 LSLIQGPPGTGKTVTSATIVYHLAR  221 (624)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHH
Confidence            4688999999999998888777653

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=94.63  E-value=0.024  Score=49.51  Aligned_cols=23  Identities=22%  Similarity=0.521  Sum_probs=21.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.|.||+|+|||+++++|+..+
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhhc
Confidence            67899999999999999998875

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.63  E-value=0.02  Score=45.58  Aligned_cols=25  Identities=16%  Similarity=0.298  Sum_probs=21.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+.+.|++|+|||++++.|+..+-.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~~~   28 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPILRE   28 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhh
Confidence            4678999999999999999888654

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=94.61  E-value=0.025  Score=44.50  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=21.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ...|+||+|+|||++.++|.-.+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHcC
Confidence            5788999999999999999776654

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=94.56  E-value=0.073  Score=43.41  Aligned_cols=25  Identities=12%  Similarity=-0.025  Sum_probs=20.7

Q ss_pred             EEEEeecCCChHH-HHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKN-YVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt-~~A~~la~~l~~  133 (247)
                      ..+++||.|+||| .+.+++.+....
T Consensus        22 l~fiyG~MgsGKTt~Ll~~i~n~~~~   47 (195)
T 1w4r_A           22 IQVILGPMFSGKSTELMRRVRRFQIA   47 (195)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHc
Confidence            4778999999999 888998777543

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=94.54  E-value=0.027  Score=48.11  Aligned_cols=25  Identities=16%  Similarity=0.029  Sum_probs=22.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+.+.||||+|||++++.++..+..
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~~~~   61 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQWGT   61 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            6789999999999999999988654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=94.50  E-value=0.041  Score=43.22  Aligned_cols=25  Identities=16%  Similarity=0.300  Sum_probs=21.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++..+++.|++|+|||++...+...
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4456889999999999999998654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=94.46  E-value=0.028  Score=47.75  Aligned_cols=24  Identities=21%  Similarity=0.205  Sum_probs=21.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+++.||+|+|||+++..++..+.
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh
Confidence            688999999999999999987643

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=94.44  E-value=0.05  Score=49.46  Aligned_cols=41  Identities=24%  Similarity=0.303  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694          84 ELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus        84 ~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ..+.+.+.+.+........      .+.|.||+|+|||++.++|+..
T Consensus        52 ~~~~~~i~~~L~~~~~~~~------~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           52 QLTNSAISDALKEIDSSVL------NVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             HHHHHHHHHHHHHHHHCCE------EEEEEECTTSSHHHHHHHHHTC
T ss_pred             cccchhhhhhhhhcccCCe------EEEEECCCCCcHHHHHHHHhCC
Confidence            3445566666665443333      7889999999999999999764

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.37  E-value=0.027  Score=45.31  Aligned_cols=22  Identities=14%  Similarity=0.336  Sum_probs=19.5

Q ss_pred             eEEEEeecCCChHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~  129 (247)
                      ..++|.|++|+|||++|..+.+
T Consensus        17 ~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            3689999999999999998855

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=94.35  E-value=0.04  Score=44.54  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=21.7

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ..+.+.|++|+|||+++..++..+.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            3688899999999999999988753

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.32  E-value=0.03  Score=44.73  Aligned_cols=25  Identities=16%  Similarity=0.379  Sum_probs=21.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+.+.|++|+|||++.+.+...+..
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~~~l~~   32 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLIPALCA   32 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhccc
Confidence            5788999999999999999887543

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=94.25  E-value=0.085  Score=42.67  Aligned_cols=27  Identities=19%  Similarity=0.440  Sum_probs=22.7

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +..+.+.|++|+|||+++..++...+.
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~   64 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNLKD   64 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            346788899999999999999888654

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=94.20  E-value=0.24  Score=49.50  Aligned_cols=23  Identities=13%  Similarity=0.086  Sum_probs=20.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||.|+|||++.+.++...
T Consensus       675 i~~ItGPNGaGKSTlLr~i~~i~  697 (918)
T 3thx_B          675 VMIITGPNMGGKSSYIKQVALIT  697 (918)
T ss_dssp             EEEEESCCCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCchHHHHHHHHHHH
Confidence            58899999999999999997653

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=94.16  E-value=0.023  Score=47.07  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=20.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57889999999999999997653

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=94.15  E-value=0.045  Score=53.89  Aligned_cols=25  Identities=32%  Similarity=0.489  Sum_probs=21.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ..+++||||||||+++..+...+..
T Consensus       373 ~~lI~GppGTGKT~ti~~~i~~l~~  397 (800)
T 2wjy_A          373 LSLIQGPPGTGKTVTSATIVYHLAR  397 (800)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            5688999999999998888777653

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=94.13  E-value=0.024  Score=46.55  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=20.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+.+.||+|+||||+.++|+..
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5778999999999999999876

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=94.11  E-value=0.027  Score=47.07  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            67899999999999999997653

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=94.10  E-value=0.019  Score=47.41  Aligned_cols=26  Identities=19%  Similarity=0.330  Sum_probs=22.2

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .++..+.|.|+.|+||||+++.|+..
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            35567899999999999999999664

>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A

Probab=94.04  E-value=0.32  Score=44.36  Aligned_cols=25  Identities=32%  Similarity=0.228  Sum_probs=20.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ..++.-++|+|||..|-++...+..
T Consensus        58 ~~ilad~~GlGKT~~ai~~i~~~~~   82 (500)
T 1z63_A           58 GICLADDMGLGKTLQTIAVFSDAKK   82 (500)
T ss_dssp             CEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHHHh
Confidence            4577889999999999888777654

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=94.04  E-value=0.032  Score=46.71  Aligned_cols=23  Identities=35%  Similarity=0.622  Sum_probs=20.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      -+-+.|+||+|||+.|+.|++.+
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceeeECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999884

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=94.01  E-value=0.03  Score=46.98  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=20.8

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      -.+.+.||+|+||||+.++|+..+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            367889999999999999997764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=93.98  E-value=0.039  Score=47.11  Aligned_cols=24  Identities=25%  Similarity=0.374  Sum_probs=21.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+.+.||+|+||||+.+.|+....
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999988753

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=93.95  E-value=0.035  Score=49.54  Aligned_cols=23  Identities=17%  Similarity=0.252  Sum_probs=20.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.|.||+|+||||+.++|+-.+
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            57889999999999999997764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=93.94  E-value=0.038  Score=42.04  Aligned_cols=26  Identities=19%  Similarity=0.235  Sum_probs=21.7

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++..+++.|++|+|||++.+.+....
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCC
Confidence            45568999999999999999996643

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=93.93  E-value=0.03  Score=46.78  Aligned_cols=23  Identities=17%  Similarity=0.407  Sum_probs=20.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            67889999999999999997653

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=93.92  E-value=0.13  Score=45.36  Aligned_cols=25  Identities=20%  Similarity=0.251  Sum_probs=22.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+++.|+||+|||++|..+|.++..
T Consensus        48 LiiIaG~pG~GKTt~al~ia~~~a~   72 (338)
T 4a1f_A           48 LVIIGARPSMGKTSLMMNMVLSALN   72 (338)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            6888999999999999999888654

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=93.91  E-value=0.032  Score=49.42  Aligned_cols=24  Identities=13%  Similarity=0.286  Sum_probs=21.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+.+.||+|+||||+++.|+..+.
T Consensus       172 k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          172 TVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            478899999999999999998853

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=93.91  E-value=0.049  Score=48.38  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=20.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++++..+
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            67899999999999999997763

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=93.89  E-value=0.071  Score=49.28  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=20.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+.|.|++|+|||+++..++....
T Consensus       153 ~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          153 KIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCccHHHHHHHhhhh
Confidence            468899999999999999987643

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=93.85  E-value=0.28  Score=43.00  Aligned_cols=28  Identities=21%  Similarity=0.457  Sum_probs=23.6

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++..+.+.|++|+|||++++.++..+..
T Consensus        55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~   82 (341)
T 2p67_A           55 NTLRLGVTGTPGAGKSTFLEAFGMLLIR   82 (341)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            4557888999999999999999887643

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=93.77  E-value=0.033  Score=47.30  Aligned_cols=23  Identities=30%  Similarity=0.300  Sum_probs=20.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            67889999999999999997654

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=93.71  E-value=0.057  Score=50.39  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=20.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++++.||+|+||||+.+++...+
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            57999999999999999997664

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=93.69  E-value=0.25  Score=48.56  Aligned_cols=24  Identities=13%  Similarity=0.038  Sum_probs=21.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+.+.||.|+|||++.+.++-...
T Consensus       609 i~~ItGpNGsGKSTlLr~iagl~~  632 (800)
T 1wb9_A          609 MLIITGPNMGGKSTYMRQTALIAL  632 (800)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHHHHH
Confidence            578899999999999999987643

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=93.68  E-value=0.037  Score=46.56  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=20.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+.+.||+|+||||+.++|+..
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999775

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=93.68  E-value=0.11  Score=50.81  Aligned_cols=24  Identities=13%  Similarity=0.062  Sum_probs=21.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+.+.||.|+|||++.+.++-...
T Consensus       578 i~~I~GpNGsGKSTlLr~iagl~~  601 (765)
T 1ewq_A          578 LVLITGPNMAGKSTFLRQTALIAL  601 (765)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHhhhh
Confidence            578899999999999999987653

>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}

Probab=93.65  E-value=0.22  Score=49.92  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=21.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ..++.+++|+|||.+|-.++..+..
T Consensus       172 ~~LLad~tGlGKTi~Ai~~i~~l~~  196 (968)
T 3dmq_A          172 RVLLADEVGLGKTIEAGMILHQQLL  196 (968)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHH
Confidence            5788999999999999888877665

>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A

Probab=93.64  E-value=1.4  Score=44.32  Aligned_cols=23  Identities=13%  Similarity=0.354  Sum_probs=18.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+++.+|||+|||+++......+
T Consensus        56 ~vlv~apTGsGKTlv~~~~i~~~   78 (997)
T 4a4z_A           56 SVFVAAHTSAGKTVVAEYAIAMA   78 (997)
T ss_dssp             EEEEECCTTSCSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHHH
Confidence            57889999999999876654443

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=93.63  E-value=0.12  Score=43.26  Aligned_cols=27  Identities=15%  Similarity=-0.113  Sum_probs=20.0

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ....+++|+.|.|||+.+-..+.....
T Consensus        19 g~l~v~~G~MgsGKTT~lL~~~~r~~~   45 (234)
T 2orv_A           19 GQIQVILGPMFSGKSTELMRRVRRFQI   45 (234)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence            345778999999999877666655443

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=93.62  E-value=0.046  Score=43.37  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=21.3

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ..+.+.|++|+|||++.+.+....+
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~   54 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEF   54 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCC
Confidence            4588999999999999999976543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=93.60  E-value=0.042  Score=49.42  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=20.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.|.||+|+||||+.++|+-.+
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            57889999999999999997764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=93.60  E-value=0.045  Score=46.61  Aligned_cols=22  Identities=18%  Similarity=0.375  Sum_probs=20.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+.+.||+|+||||+.++|+..
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6789999999999999999775

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=93.59  E-value=0.048  Score=41.24  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=20.1

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHH
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +..+++.|++|+|||++...+...
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            346899999999999999888654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=93.59  E-value=0.039  Score=46.21  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=20.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57889999999999999997653

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=93.59  E-value=0.033  Score=47.13  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            67889999999999999997654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=93.58  E-value=0.038  Score=49.23  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=20.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+-.+
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57889999999999999997654

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=93.57  E-value=0.33  Score=49.05  Aligned_cols=23  Identities=13%  Similarity=0.011  Sum_probs=19.6

Q ss_pred             eEEEEeecCCChHHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~  130 (247)
                      -.+.++||.|+|||++.+.++-.
T Consensus       790 ~i~~ItGpNgsGKSTlLr~iGl~  812 (1022)
T 2o8b_B          790 YCVLVTGPNMGGKSTLMRQAGLL  812 (1022)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHHHH
Confidence            46789999999999999999443

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=93.54  E-value=0.033  Score=47.76  Aligned_cols=23  Identities=17%  Similarity=0.231  Sum_probs=20.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            67889999999999999997653

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=93.54  E-value=0.051  Score=40.92  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=19.9

Q ss_pred             eEEEEeecCCChHHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ..+++.|++|+|||++.+.+...
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35789999999999999999655

>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19

Probab=93.52  E-value=0.055  Score=48.18  Aligned_cols=24  Identities=17%  Similarity=0.149  Sum_probs=19.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+++.+|+|+|||.++-.++....
T Consensus        25 ~~ll~~~tG~GKT~~~~~~~~~~~   48 (494)
T 1wp9_A           25 NCLIVLPTGLGKTLIAMMIAEYRL   48 (494)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHH
Confidence            357899999999999988866643

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.50  E-value=0.035  Score=46.46  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=20.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999997653

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=93.50  E-value=0.045  Score=48.86  Aligned_cols=23  Identities=26%  Similarity=0.327  Sum_probs=20.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+-.+
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            57889999999999999997764

>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}

Probab=93.49  E-value=0.98  Score=45.96  Aligned_cols=22  Identities=14%  Similarity=0.425  Sum_probs=17.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+++.+|||+|||+++......
T Consensus       201 dvLV~ApTGSGKTlva~l~i~~  222 (1108)
T 3l9o_A          201 SVLVSAHTSAGKTVVAEYAIAQ  222 (1108)
T ss_dssp             CEEEECCSSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHH
Confidence            5789999999999998655444

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=93.49  E-value=0.055  Score=49.23  Aligned_cols=25  Identities=20%  Similarity=0.202  Sum_probs=21.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+++.||+|+||||+.+++...+..
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l~~  193 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQELNS  193 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHHhhcCC
Confidence            5789999999999999999887543

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=93.48  E-value=0.04  Score=48.91  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+-.+
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            57889999999999999997653

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=93.47  E-value=0.046  Score=48.75  Aligned_cols=23  Identities=22%  Similarity=0.296  Sum_probs=20.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+-.+
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            57889999999999999997764

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=93.47  E-value=0.068  Score=52.60  Aligned_cols=24  Identities=33%  Similarity=0.465  Sum_probs=19.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ..++.||||||||+++..+...+.
T Consensus       377 ~~lI~GppGTGKT~~i~~~i~~l~  400 (802)
T 2xzl_A          377 LSLIQGPPGTGKTVTSATIVYHLS  400 (802)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH
Confidence            468899999999999877766554

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=93.46  E-value=0.035  Score=46.69  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57889999999999999997663

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=93.45  E-value=0.055  Score=44.33  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+++.|+||+|||++|.-++.+
T Consensus        32 l~~i~G~pG~GKT~l~l~~~~~   53 (251)
T 2zts_A           32 TVLLTGGTGTGKTTFAAQFIYK   53 (251)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            6889999999999999877654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=93.44  E-value=0.041  Score=46.87  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=20.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            67889999999999999997653

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=93.44  E-value=0.047  Score=48.96  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.|.||+|+||||+.++|+-.+
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            57889999999999999997764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.43  E-value=0.043  Score=42.56  Aligned_cols=24  Identities=33%  Similarity=0.452  Sum_probs=20.5

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHH
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIV  128 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la  128 (247)
                      .++..+++.|++|+|||++...+.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            356679999999999999998874

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.42  E-value=0.053  Score=43.20  Aligned_cols=25  Identities=28%  Similarity=0.331  Sum_probs=20.5

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ...-+++.|++|+|||++...+...
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            4456899999999999999988643

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=93.40  E-value=0.059  Score=42.25  Aligned_cols=25  Identities=28%  Similarity=0.395  Sum_probs=20.9

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHH
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~  129 (247)
                      .++.-+++.|++|+|||++.+.+..
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~   38 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLAS   38 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhc
Confidence            4556789999999999999988843

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=93.39  E-value=0.052  Score=42.24  Aligned_cols=26  Identities=19%  Similarity=0.128  Sum_probs=21.8

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++..+++.|++|+|||++.+.+...
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence            44567899999999999999998654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=93.38  E-value=0.036  Score=47.20  Aligned_cols=23  Identities=17%  Similarity=0.433  Sum_probs=20.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57889999999999999997653

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=93.37  E-value=0.056  Score=42.15  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=20.7

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~  129 (247)
                      ++..+.+.|++|+|||++.+.+..
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            445689999999999999999965

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=93.36  E-value=0.038  Score=45.89  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=20.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999997653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=93.35  E-value=0.05  Score=41.72  Aligned_cols=25  Identities=24%  Similarity=0.450  Sum_probs=20.4

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++.-+++.|++|+|||++.+.+...
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcC
Confidence            3446899999999999999988543

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=93.34  E-value=0.043  Score=49.14  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=20.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+-.+
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            57889999999999999997664

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=93.34  E-value=0.036  Score=45.75  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=20.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57789999999999999996653

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=93.33  E-value=0.07  Score=43.20  Aligned_cols=25  Identities=24%  Similarity=0.472  Sum_probs=22.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      -+.|.|+.|+||||.++.|++.|-.
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~   26 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEK   26 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3678999999999999999999765

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=93.33  E-value=0.043  Score=46.83  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            67899999999999999997653

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=93.31  E-value=0.07  Score=41.69  Aligned_cols=26  Identities=15%  Similarity=0.183  Sum_probs=21.9

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.-+++.|++|+|||++...+...
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            35567899999999999999998654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=93.31  E-value=0.044  Score=46.45  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            67899999999999999997653

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=93.30  E-value=0.064  Score=41.23  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=21.6

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .++..+++.|++|+|||++.+.+...
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34556899999999999999998654

>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*

Probab=93.27  E-value=0.16  Score=47.17  Aligned_cols=20  Identities=15%  Similarity=0.074  Sum_probs=15.8

Q ss_pred             EEEEeecCCChHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIV  128 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la  128 (247)
                      .+++.+|||+|||.++..-+
T Consensus        42 d~lv~apTGsGKTl~~~lp~   61 (523)
T 1oyw_A           42 DCLVVMPTGGGKSLCYQIPA   61 (523)
T ss_dssp             CEEEECSCHHHHHHHHHHHH
T ss_pred             CEEEECCCCcHHHHHHHHHH
Confidence            46778999999998776553

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.26  E-value=0.045  Score=46.36  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=20.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            67889999999999999997653

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=93.21  E-value=0.046  Score=46.44  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=20.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57889999999999999997653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=93.20  E-value=0.062  Score=40.87  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=20.2

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHH
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++.+++.|++|+|||++...+...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            346889999999999999998643

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=93.20  E-value=0.056  Score=44.16  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=21.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      -+.|.|+.|+||||.++.|++.|
T Consensus         4 FI~~EG~dGsGKsTq~~~L~~~L   26 (205)
T 4hlc_A            4 FITFEGPEGSGKTTVINEVYHRL   26 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            36789999999999999999987

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=93.19  E-value=0.072  Score=40.61  Aligned_cols=26  Identities=27%  Similarity=0.414  Sum_probs=21.6

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++..+++.|++|+|||++...+...
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            34567899999999999999998553

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=93.19  E-value=0.041  Score=46.40  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=20.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57889999999999999997653

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=93.16  E-value=0.06  Score=41.44  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=21.0

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++..+++.|++|+|||++.+.+...
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4456899999999999999888654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=93.15  E-value=0.055  Score=41.26  Aligned_cols=25  Identities=16%  Similarity=0.114  Sum_probs=21.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++..+++.|++|+|||++.+.+...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4456899999999999999998654

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=93.15  E-value=0.065  Score=47.40  Aligned_cols=24  Identities=17%  Similarity=0.282  Sum_probs=21.4

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      -.+.+.||+|+|||+++..++...
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            368899999999999999998874

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=93.14  E-value=0.062  Score=40.61  Aligned_cols=24  Identities=21%  Similarity=0.217  Sum_probs=20.3

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHH
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +..+++.|++|+|||++.+.+...
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            346889999999999999998654

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=93.12  E-value=0.32  Score=44.41  Aligned_cols=25  Identities=12%  Similarity=0.099  Sum_probs=22.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+++.|+||+|||++|.-+|.+...
T Consensus       199 liiIaG~pG~GKTtlal~ia~~~a~  223 (444)
T 3bgw_A          199 FVLIAARPSMGKTAFALKQAKNMSD  223 (444)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCChHHHHHHHHHHHHH
Confidence            5889999999999999999888654

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=93.12  E-value=0.042  Score=47.15  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57889999999999999997654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=93.12  E-value=0.064  Score=41.29  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=21.0

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++..+++.|++|+|||++.+.+...
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4556889999999999999998553

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=93.10  E-value=0.059  Score=41.50  Aligned_cols=21  Identities=29%  Similarity=0.498  Sum_probs=18.8

Q ss_pred             EEEEeecCCChHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~  129 (247)
                      .+.+.|++|+|||++.+.+..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578899999999999999965

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=93.08  E-value=0.049  Score=41.40  Aligned_cols=25  Identities=20%  Similarity=0.209  Sum_probs=20.9

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++..+++.|++|+|||++.+.+...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcC
Confidence            4456899999999999999988653

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=93.08  E-value=0.041  Score=48.91  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=20.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+-.+
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57889999999999999997653

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=93.06  E-value=0.056  Score=43.00  Aligned_cols=24  Identities=21%  Similarity=0.296  Sum_probs=20.5

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ..+.+.|++|+|||++.+.+....
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            357889999999999999997653

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=93.04  E-value=0.069  Score=41.10  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=21.2

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++.-+++.|++|+|||++.+.+...
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhC
Confidence            4556899999999999999998654

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=93.04  E-value=0.06  Score=48.54  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=19.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+.|.||+|+||||+.++|+..
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5788999999999999999764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=92.99  E-value=0.059  Score=41.84  Aligned_cols=25  Identities=20%  Similarity=0.348  Sum_probs=21.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++-+++.|++|+|||++...+...
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhC
Confidence            3456899999999999999999654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=92.98  E-value=0.058  Score=41.04  Aligned_cols=25  Identities=28%  Similarity=0.387  Sum_probs=21.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +.+.+++.|++|+|||++.+.+...
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3456899999999999999998654

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=92.96  E-value=0.047  Score=46.14  Aligned_cols=23  Identities=22%  Similarity=0.439  Sum_probs=20.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999997653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=92.94  E-value=0.07  Score=41.73  Aligned_cols=26  Identities=15%  Similarity=0.130  Sum_probs=21.6

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +..-+++.|++|+|||++.+.+...-
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~~   31 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKDC   31 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcCC
Confidence            44568899999999999999996653

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=92.89  E-value=0.13  Score=41.36  Aligned_cols=21  Identities=19%  Similarity=0.336  Sum_probs=18.2

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|++|+|||+.|+.++..
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            578999999999999998643

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=92.87  E-value=0.091  Score=43.60  Aligned_cols=28  Identities=18%  Similarity=0.255  Sum_probs=23.6

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .++..+.+.|.+|+|||+++..++..+.
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3555788899999999999999988754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=92.84  E-value=0.069  Score=41.98  Aligned_cols=25  Identities=20%  Similarity=0.288  Sum_probs=21.2

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++..+++.|++|+|||++.+.+...
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcC
Confidence            4456899999999999999988654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=92.79  E-value=0.069  Score=40.97  Aligned_cols=25  Identities=12%  Similarity=0.234  Sum_probs=20.7

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++..+++.|++|+|||++.+.+...
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            3356899999999999999998643

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=92.79  E-value=0.075  Score=40.27  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=19.8

Q ss_pred             eEEEEeecCCChHHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .-+++.|++|+|||++.+.+...
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45789999999999999998654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=92.79  E-value=0.069  Score=40.59  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=19.7

Q ss_pred             CeEEEEeecCCChHHHHHHHHHH
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~  129 (247)
                      ..-+++.|++|+|||++.+.+..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            34688999999999999998854

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=92.78  E-value=0.06  Score=41.41  Aligned_cols=24  Identities=17%  Similarity=0.218  Sum_probs=20.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~  129 (247)
                      ...-+++.|++|+|||++.+.+..
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             cceEEEEECCCCCCHHHHHHHHhc
Confidence            445689999999999999998843

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=92.78  E-value=0.13  Score=45.09  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=19.8

Q ss_pred             eEEEEeecCCChHHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ..++|.|++|+|||++|..+.+.
T Consensus       145 ~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          145 VGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhc
Confidence            36899999999999999988553

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=92.77  E-value=0.051  Score=46.22  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=20.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999997765

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=92.76  E-value=0.068  Score=40.33  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=18.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+++.|++|+|||++.+.+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3688999999999999998654

>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}

Probab=92.74  E-value=2  Score=43.29  Aligned_cols=22  Identities=14%  Similarity=0.425  Sum_probs=17.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+++.+|||+|||.++......
T Consensus       103 ~vLV~apTGSGKTlva~lai~~  124 (1010)
T 2xgj_A          103 SVLVSAHTSAGKTVVAEYAIAQ  124 (1010)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHH
Confidence            5788999999999998654433

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=92.73  E-value=0.079  Score=41.53  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=20.7

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++..+++.|++|+|||++...+...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4456899999999999999988543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=92.72  E-value=0.062  Score=41.32  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=20.8

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++..+++.|++|+|||++.+.+...
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            3456899999999999999998654

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=92.71  E-value=0.17  Score=42.57  Aligned_cols=24  Identities=29%  Similarity=0.474  Sum_probs=20.4

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~  129 (247)
                      +++.+++.|++|+|||++...+..
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~   61 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIG   61 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhC
Confidence            455789999999999999998854

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.68  E-value=0.068  Score=40.55  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=19.7

Q ss_pred             eEEEEeecCCChHHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ..+++.|++|+|||++.+.+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35889999999999999988654

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=92.63  E-value=0.086  Score=45.65  Aligned_cols=23  Identities=17%  Similarity=0.270  Sum_probs=20.6

Q ss_pred             eEEEEeecCCChHHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ..+++.||||+|||++|..++.+
T Consensus        99 ~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           99 SVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999999999876

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.61  E-value=0.077  Score=40.90  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=21.7

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++..+++.|++|+|||++...+...
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhC
Confidence            34556899999999999999998654

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=92.60  E-value=0.1  Score=40.16  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=21.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ..+++||.|+|||++..+|.-.++.
T Consensus        25 ~~~I~G~NGsGKStil~Ai~~~l~g   49 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAILVGLYW   49 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcC
Confidence            5678999999999999999777665

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=92.56  E-value=0.062  Score=42.16  Aligned_cols=21  Identities=19%  Similarity=0.403  Sum_probs=18.5

Q ss_pred             EEEEeecCCChHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~  129 (247)
                      -+.+.|++|+|||++.+.+..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478899999999999999865

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=92.52  E-value=0.084  Score=40.48  Aligned_cols=25  Identities=16%  Similarity=0.181  Sum_probs=21.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +...+++.|++|+|||++.+.+...
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            3456899999999999999998654

>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}

Probab=92.51  E-value=0.58  Score=42.11  Aligned_cols=17  Identities=18%  Similarity=0.153  Sum_probs=14.3

Q ss_pred             EEEEeecCCChHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTD  125 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~  125 (247)
                      .+++.+|+|+|||.+.-
T Consensus        95 d~i~~a~TGsGKT~a~~  111 (434)
T 2db3_A           95 DLMACAQTGSGKTAAFL  111 (434)
T ss_dssp             CEEEECCTTSSHHHHHH
T ss_pred             CEEEECCCCCCchHHHH
Confidence            57889999999998654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=92.38  E-value=0.096  Score=40.40  Aligned_cols=25  Identities=16%  Similarity=0.069  Sum_probs=20.9

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++.-+++.|++|+|||++.+.+...
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            4556899999999999999888654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=92.37  E-value=0.073  Score=45.95  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=20.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+|||++.++|+..+
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57889999999999999996653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=92.35  E-value=0.081  Score=40.80  Aligned_cols=25  Identities=24%  Similarity=0.219  Sum_probs=20.9

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++.-+++.|++|+|||++.+.+...
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4456899999999999999888654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=92.33  E-value=0.078  Score=41.47  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=20.6

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHH
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +..+++.|++|+|||++...+...
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcC
Confidence            346899999999999999999654

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=92.30  E-value=0.2  Score=41.95  Aligned_cols=25  Identities=16%  Similarity=0.407  Sum_probs=21.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.+++.|++|+|||++...+...
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4567899999999999999998543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=92.26  E-value=0.054  Score=43.20  Aligned_cols=25  Identities=12%  Similarity=0.349  Sum_probs=20.5

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +...+.+.|++|+|||++.+.+...
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3446889999999999999988543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.25  E-value=0.1  Score=41.17  Aligned_cols=25  Identities=16%  Similarity=0.368  Sum_probs=21.2

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++.-+++.|++|+|||++.+.+...
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4556899999999999999998654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=92.24  E-value=0.097  Score=41.50  Aligned_cols=26  Identities=27%  Similarity=0.258  Sum_probs=20.8

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .++..+++.|++|+|||++.+.+...
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            34567899999999999999998654

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=92.23  E-value=0.3  Score=43.02  Aligned_cols=26  Identities=27%  Similarity=0.556  Sum_probs=22.4

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ...+.|.|+||+|||++.+.+...+.
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~   99 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLT   99 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            45688999999999999999987653

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=92.19  E-value=0.092  Score=40.75  Aligned_cols=25  Identities=20%  Similarity=0.288  Sum_probs=21.0

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +..-+++.|++|+|||++.+.+...
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            3456899999999999999998654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=92.19  E-value=0.085  Score=43.42  Aligned_cols=25  Identities=32%  Similarity=0.440  Sum_probs=21.0

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .++.+.|.|++|+|||++...+...
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCC
Confidence            4557899999999999999988553

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=92.18  E-value=0.1  Score=40.60  Aligned_cols=23  Identities=17%  Similarity=0.462  Sum_probs=19.7

Q ss_pred             eEEEEeecCCChHHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .-+.+.|++|+|||++.+.+...
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35789999999999999999653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=92.16  E-value=0.099  Score=41.30  Aligned_cols=25  Identities=20%  Similarity=0.304  Sum_probs=19.9

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++.-+.+.|++|+|||++.+.+...
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3346889999999999999998653

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=92.14  E-value=0.099  Score=40.37  Aligned_cols=25  Identities=20%  Similarity=0.203  Sum_probs=20.9

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +...+++.|++|+|||++.+.+...
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhC
Confidence            3456899999999999999998654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=92.13  E-value=0.098  Score=40.96  Aligned_cols=25  Identities=20%  Similarity=0.215  Sum_probs=21.2

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .++-+++.|++|+|||++.+.+...
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4456899999999999999998654

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=92.07  E-value=0.12  Score=46.76  Aligned_cols=25  Identities=24%  Similarity=0.181  Sum_probs=21.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      -+.+.||+|+|||++++.|++.+..
T Consensus       176 r~~IvG~sG~GKTtLl~~Iar~i~~  200 (422)
T 3ice_A          176 RGLIVAPPKAGKTMLLQNIAQSIAY  200 (422)
T ss_dssp             EEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCChhHHHHHHHHHHhh
Confidence            4788999999999999999987643

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=92.07  E-value=0.059  Score=47.60  Aligned_cols=27  Identities=26%  Similarity=0.348  Sum_probs=23.4

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +++.+.|.|+-|+|||++++.|++++.
T Consensus         6 ~~~fI~~EG~dGaGKTT~~~~La~~L~   32 (334)
T 1p6x_A            6 TIVRIYLDGVYGIGKSTTGRVMASAAS   32 (334)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            445688999999999999999999854

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=92.05  E-value=0.085  Score=40.05  Aligned_cols=20  Identities=30%  Similarity=0.527  Sum_probs=17.8

Q ss_pred             EEEEeecCCChHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIV  128 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la  128 (247)
                      -+++.|++|+|||++.+.+.
T Consensus         4 ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47889999999999998884

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=92.01  E-value=0.093  Score=40.59  Aligned_cols=25  Identities=28%  Similarity=0.341  Sum_probs=20.6

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++..+++.|++|+|||++...+...
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcC
Confidence            3456899999999999999988643

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=92.00  E-value=0.11  Score=40.98  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=19.9

Q ss_pred             CCeEEEEeecCCChHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIV  128 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la  128 (247)
                      +..-+++.|++|+|||++...+.
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CccEEEEECCCCCCHHHHHHHHH
Confidence            45568999999999999999884

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=91.97  E-value=0.12  Score=39.98  Aligned_cols=25  Identities=20%  Similarity=0.223  Sum_probs=20.9

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +...+++.|++|+|||++.+.+...
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3346899999999999999998654

>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}

Probab=91.96  E-value=0.27  Score=47.33  Aligned_cols=78  Identities=14%  Similarity=0.190  Sum_probs=46.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHH-----HHHHHhC-CCeEE
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWI-----ISNVTAC-DRAIF  182 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~-----~~~l~~~-~~~vl  182 (247)
                      +.+++|+.|.|||+++-.++..+..   .      +.+     ..|.+..++...+.....+     ......+ ..+++
T Consensus       194 ~~vlta~RGRGKSa~lG~~~a~~~~---~------~~v-----tAP~~~a~~~l~~~~~~~i~~~~Pd~~~~~~~~~dll  259 (671)
T 2zpa_A          194 VAAVTAARGRGKSALAGQLISRIAG---R------AIV-----TAPAKASTDVLAQFAGEKFRFIAPDALLASDEQADWL  259 (671)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHSSS---C------EEE-----ECSSCCSCHHHHHHHGGGCCBCCHHHHHHSCCCCSEE
T ss_pred             eEEEecCCCCCHHHHHHHHHHHHHh---C------cEE-----ECCCHHHHHHHHHHhhCCeEEeCchhhhhCcccCCEE
Confidence            4688999999999999988777533   1      111     1233333332222111100     0111222 24899


Q ss_pred             EEeCCCCCChhhHHHHHh
Q psy1694         183 IFDEVDKFPKGLLDVIIP  200 (247)
Q Consensus       183 ilDEiek~~~~~~~~Ll~  200 (247)
                      |+||+-.+|..++..|+.
T Consensus       260 iVDEAAaIp~pll~~ll~  277 (671)
T 2zpa_A          260 VVDEAAAIPAPLLHQLVS  277 (671)
T ss_dssp             EEETGGGSCHHHHHHHHT
T ss_pred             EEEchhcCCHHHHHHHHh
Confidence            999999999999888875

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=91.96  E-value=0.11  Score=40.90  Aligned_cols=25  Identities=20%  Similarity=0.203  Sum_probs=20.8

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +...+++.|++|+|||++...+...
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3456899999999999999988654

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=91.91  E-value=0.1  Score=46.70  Aligned_cols=23  Identities=17%  Similarity=0.211  Sum_probs=20.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            57889999999999999997653

>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}

Probab=91.91  E-value=0.32  Score=45.52  Aligned_cols=25  Identities=24%  Similarity=0.200  Sum_probs=21.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+++.+|+|+|||.+|-.++..+..
T Consensus       200 ~~ll~~~TGsGKT~~~~~~~~~l~~  224 (590)
T 3h1t_A          200 RSLITMATGTGKTVVAFQISWKLWS  224 (590)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEEecCCCChHHHHHHHHHHHHh
Confidence            4688899999999999888877655

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=91.90  E-value=0.17  Score=51.48  Aligned_cols=42  Identities=19%  Similarity=0.188  Sum_probs=32.8

Q ss_pred             CChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHH
Q psy1694          81 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus        81 ~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~  129 (247)
                      +|.+..++.+.+.+...    .   .+.++.++|+.|+|||++|+.+++
T Consensus       131 VGRe~eLeeL~elL~~~----d---~~RVV~IvGmGGIGKTTLAk~Vy~  172 (1221)
T 1vt4_I          131 VSRLQPYLKLRQALLEL----R---PAKNVLIDGVLGSGKTWVALDVCL  172 (1221)
T ss_dssp             CCCHHHHHHHHHHHHHC----C---SSCEEEECCSTTSSHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHhcc----C---CCeEEEEEcCCCccHHHHHHHHHH
Confidence            78888888887776531    1   133788999999999999999875

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=91.87  E-value=0.11  Score=40.69  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=21.0

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++..+++.|++|+|||++.+.+...
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcC
Confidence            4456999999999999999988554

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=91.86  E-value=0.11  Score=40.46  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=20.3

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~  129 (247)
                      ++..+++.|++|+|||++.+.+..
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhc
Confidence            455789999999999999998843

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=91.85  E-value=0.1  Score=41.08  Aligned_cols=25  Identities=28%  Similarity=0.421  Sum_probs=21.2

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +.+.+++.|++|+|||++.+.+...
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcC
Confidence            4556899999999999999998654

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=91.84  E-value=0.074  Score=46.31  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=20.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+|||++.++|+..+
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCchHHHHHHHHHcCC
Confidence            57889999999999999997653

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=91.83  E-value=0.14  Score=42.00  Aligned_cols=24  Identities=29%  Similarity=0.558  Sum_probs=21.3

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +.++++|.+|+||+++|+.+.+.+
T Consensus        12 ~II~itGk~~SGKd~va~~l~~~~   35 (202)
T 3ch4_B           12 LVLLFSGKRKSGKDFVTEALQSRL   35 (202)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHHHHc
Confidence            578999999999999999997753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.81  E-value=0.14  Score=40.11  Aligned_cols=25  Identities=20%  Similarity=0.300  Sum_probs=21.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ....+++.|++|+|||++.+.+...
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcC
Confidence            4456899999999999999998654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=91.81  E-value=0.11  Score=41.09  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=21.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +...+++.|++|+|||++...+...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4456899999999999999998654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=91.79  E-value=0.11  Score=41.31  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=20.0

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~  129 (247)
                      ++.-+.+.|++|+|||++.+.+..
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            444688999999999999998853

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=91.78  E-value=0.092  Score=48.34  Aligned_cols=23  Identities=22%  Similarity=0.261  Sum_probs=20.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+|||+++++|+..+
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCcc
Confidence            57888999999999999998875

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=91.76  E-value=0.13  Score=40.10  Aligned_cols=22  Identities=14%  Similarity=0.338  Sum_probs=18.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+++.|++|+|||++...+...
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5788999999999999888443

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=91.74  E-value=0.1  Score=41.00  Aligned_cols=25  Identities=28%  Similarity=0.242  Sum_probs=21.3

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++.-+++.|++|+|||++.+.+...
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcC
Confidence            4456899999999999999998665

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=91.71  E-value=0.12  Score=41.01  Aligned_cols=25  Identities=16%  Similarity=0.244  Sum_probs=21.2

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +..-+++.|++|+|||++.+.+...
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhC
Confidence            4456899999999999999998665

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=91.69  E-value=0.12  Score=42.82  Aligned_cols=28  Identities=14%  Similarity=0.272  Sum_probs=22.8

Q ss_pred             CCeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694         178 DRAIFIFDEVDKFPKGLLDVIIPFIDHH  205 (247)
Q Consensus       178 ~~~vlilDEiek~~~~~~~~Ll~~Le~~  205 (247)
                      +..+|++||++-+++++.+.+..+.+.+
T Consensus       101 ~~dvV~IDEaQFf~~~~v~~l~~la~~g  128 (219)
T 3e2i_A          101 NVDVIGIDEVQFFDDEIVSIVEKLSADG  128 (219)
T ss_dssp             TCSEEEECCGGGSCTHHHHHHHHHHHTT
T ss_pred             CCCEEEEechhcCCHHHHHHHHHHHHCC
Confidence            4579999999999998888887776543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=91.66  E-value=0.11  Score=40.70  Aligned_cols=25  Identities=28%  Similarity=0.477  Sum_probs=20.9

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.+++.|++|+|||++.+.+...
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcC
Confidence            3456899999999999999998654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=91.65  E-value=0.12  Score=40.69  Aligned_cols=25  Identities=16%  Similarity=0.154  Sum_probs=20.8

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ...-+++.|++|+|||++.+.+...
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           20 YLFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcC
Confidence            3446899999999999999988654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.63  E-value=0.14  Score=40.07  Aligned_cols=24  Identities=17%  Similarity=0.219  Sum_probs=20.4

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~  129 (247)
                      +...+++.|++|+|||++.+.+..
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            445689999999999999999853

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=91.62  E-value=0.097  Score=39.84  Aligned_cols=20  Identities=25%  Similarity=0.350  Sum_probs=17.9

Q ss_pred             EEEEeecCCChHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIV  128 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la  128 (247)
                      -+++.|++|+|||++.+.+.
T Consensus         4 ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47889999999999999884

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=91.59  E-value=0.1  Score=40.64  Aligned_cols=24  Identities=25%  Similarity=0.225  Sum_probs=20.1

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHH
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ..-+++.|++|+|||++.+.+...
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~   37 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSK   37 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhh
Confidence            345899999999999999888654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=91.59  E-value=0.092  Score=44.26  Aligned_cols=25  Identities=20%  Similarity=0.422  Sum_probs=21.0

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHH
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~  129 (247)
                      .+...+.+.|+||+|||++...+..
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHC
Confidence            3455689999999999999999854

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=91.59  E-value=0.16  Score=43.77  Aligned_cols=20  Identities=25%  Similarity=0.360  Sum_probs=18.7

Q ss_pred             EEEEeecCCChHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIV  128 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la  128 (247)
                      .+.|.||+|+|||++.++|+
T Consensus       167 i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57889999999999999997

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=91.55  E-value=0.4  Score=41.24  Aligned_cols=28  Identities=21%  Similarity=0.482  Sum_probs=23.2

Q ss_pred             CCeEEEEeec-CCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGL-PGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~-~GtGKt~~A~~la~~l~~  133 (247)
                      .+.+++++|+ +|+|||++|..+|..+..
T Consensus       103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~  131 (299)
T 3cio_A          103 ENNILMITGATPDSGKTFVSSTLAAVIAQ  131 (299)
T ss_dssp             SCCEEEEEESSSSSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCChHHHHHHHHHHHHh
Confidence            4457888886 799999999999998765

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=91.55  E-value=0.12  Score=40.37  Aligned_cols=24  Identities=17%  Similarity=0.109  Sum_probs=20.6

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHH
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ...+++.|++|+|||++.+.+...
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            456899999999999999998654

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=91.55  E-value=0.15  Score=41.26  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=22.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ..+++||.|+|||++..+|.-.++.
T Consensus        25 ~~~I~G~NgsGKStil~ai~~~l~g   49 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAILVGLYW   49 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            5678999999999999999877775

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=91.51  E-value=0.13  Score=40.50  Aligned_cols=25  Identities=20%  Similarity=0.347  Sum_probs=20.7

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +..-+++.|++|+|||++.+.+...
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhC
Confidence            3456899999999999999888654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=91.49  E-value=0.12  Score=39.14  Aligned_cols=24  Identities=21%  Similarity=0.209  Sum_probs=20.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      -+++.|++|+|||++...+...-+
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~~   25 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGEI   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCc
Confidence            368899999999999999966544

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=91.46  E-value=0.12  Score=40.32  Aligned_cols=26  Identities=15%  Similarity=0.233  Sum_probs=20.7

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+...+++.|++|+|||++.+.+...
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC
Confidence            35567999999999999999998643

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=91.46  E-value=0.19  Score=44.31  Aligned_cols=26  Identities=19%  Similarity=0.158  Sum_probs=22.4

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ..+++.|..|+|||++|..+|..+..
T Consensus        27 ~i~v~sgKGGvGKTTvA~~LA~~lA~   52 (349)
T 3ug7_A           27 KYIMFGGKGGVGKTTMSAATGVYLAE   52 (349)
T ss_dssp             EEEEEECSSSTTHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHHH
Confidence            35677899999999999999998765

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=91.44  E-value=0.13  Score=40.79  Aligned_cols=25  Identities=20%  Similarity=0.214  Sum_probs=20.9

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ...-+++.|++|+|||++...+...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcC
Confidence            3456899999999999999998654

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.41  E-value=0.13  Score=41.19  Aligned_cols=27  Identities=26%  Similarity=0.395  Sum_probs=21.8

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +...+++.|++|+|||++.+.+....+
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~   51 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQGLF   51 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCC
Confidence            345689999999999999998865533

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=91.40  E-value=0.13  Score=41.16  Aligned_cols=27  Identities=19%  Similarity=0.294  Sum_probs=20.9

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +...+++.|++|+|||++...+...-+
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~   32 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQY   32 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            344688999999999999999866533

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=91.39  E-value=0.14  Score=40.19  Aligned_cols=26  Identities=15%  Similarity=0.263  Sum_probs=20.8

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +..-+++.|++|+|||++...+...-
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~~~   44 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLTGT   44 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            34458999999999999998775543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	247
d1qvra3	315	c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus	2e-12
d1r6bx3	315	c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, A	6e-07
d1ofha_	309	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	6e-06
d1njfa_	239	c.37.1.20 (A:) delta prime subunit of DNA polymera	0.003

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 315

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

 Score = 63.2 bits (153), Expect = 2e-12
 Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 14/172 (8%)

Query: 72  LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA-ISLHGLPGTGKNYVTDFIVSS 130
           LEE+L + V GQ+ AI  +  A++          + +      G  G GK  +   + ++
Sbjct: 17  LEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 76

Query: 131 IF----KRYKDKGTSRFVHKFNSRIHFPNENHV-SLYRLQLTNWIISNVTACDRAIFIFD 185
           +F       +   T        SR+      +V      QLT      V     ++ +FD
Sbjct: 77  LFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEA----VRRRPYSVILFD 132

Query: 186 EVDKFPKGLLDVIIPFIDHHAV----YNQISFQNTIFLFLSNSGGTEIMNTF 233
           E++K    + ++++  +D   +       + F+NT+ +  SN G   I+   
Sbjct: 133 EIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGL 184

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

 Score = 47.1 bits (111), Expect = 6e-07
 Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 7/168 (4%)

Query: 72  LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA-ISLHGLPGTGKNYVTDFIVSS 130
           L ++LK  V GQ+ AI  +  A+K       H  K +      G  G GK  VT  +  +
Sbjct: 16  LGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 75

Query: 131 IFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF 190
           +         S ++ +               +       +   V     A+ + DE++K 
Sbjct: 76  LGIELLRFDMSEYMERHTVSRLIGAPPGYVGF--DQGGLLTDAVIKHPHAVLLLDEIEKA 133

Query: 191 PKGLLDVIIPFIDHHAV----YNQISFQNTIFLFLSNSGGTEIMNTFL 234
              + ++++  +D+  +      +  F+N + +  +N+G  E     +
Sbjct: 134 HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSI 181

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score = 44.1 bits (103), Expect = 6e-06
 Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 11/129 (8%)

Query: 70  RVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA------ISLHGLPGTGKNYV 123
           R +  +L QH+ GQ  A   +  AL+N ++                I + G  G GK  +
Sbjct: 6   REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEI 65

Query: 124 TDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFI 183
              +       +     ++F           +       R    +   +        I  
Sbjct: 66  ARRLAKLANAPFIKVEATKFTEVGYVGKEVDSII-----RDLTDSAGGAIDAVEQNGIVF 120

Query: 184 FDEVDKFPK 192
            DE+DK  K
Sbjct: 121 IDEIDKICK 129

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 23/157 (14%), Positives = 45/157 (28%), Gaps = 28/157 (17%)

Query: 80  VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG 139
           V GQE  ++ +   L      R H+    A    G  G GK  +   +   +        
Sbjct: 14  VVGQEHVLTALANGLSL---GRIHH----AYLFSGTRGVGKTSIARLLAKGLNCETGITA 66

Query: 140 TSRFVHKFNSRIHFPNENHVSLYRL------------QLTNWIISNVTACDRAIFIFDEV 187
           T   V      I       V L  +             L + +          +++ DEV
Sbjct: 67  TPCGVCDNCREIE--QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 124

Query: 188 DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 224
               +   + ++  ++          ++  FL  +  
Sbjct: 125 HMLSRHSFNALLKTLEEPP-------EHVKFLLATTD 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	247
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.94
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.93
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	99.75
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.75
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	99.63
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.57
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.56
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.52
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	99.5
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	99.49
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	99.45
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	99.45
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	99.44
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	99.43
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	99.4
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.39
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.31
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	99.28
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	99.27
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	99.25
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	99.25
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	99.22
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.14
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	99.13
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	99.08
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	99.04
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.97
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.88
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.87
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.79
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.75
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	98.62
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.34
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.28
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.21
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.19
d1okkd2	207	GTPase domain of the signal recognition particle r	98.15
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.05
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.04
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.98
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.93
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.93
d1tuea_	205	Replication protein E1 helicase domain {Human papi	97.89
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.85
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.81
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	97.81
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.8
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.79
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.72
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.71
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.62
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.61
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.61
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.57
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.57
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.54
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.53
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	97.52
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	97.44
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.43
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.37
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	97.32
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.31
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.31
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.29
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.29
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.28
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.28
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.28
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.27
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	97.26
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.26
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.2
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.19
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.19
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.14
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.12
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.09
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.09
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.07
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.96
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.94
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.85
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	96.82
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.8
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.77
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.7
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.66
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.65
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.52
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.51
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.35
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	96.29
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	96.19
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.18
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.15
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.13
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.02
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.98
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.98
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.97
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	95.96
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	95.94
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.92
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.87
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.87
d1rifa_	282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	95.7
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	95.63
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.55
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	95.48
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.4
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.37
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.32
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.29
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.27
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.23
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.06
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.03
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.96
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.94
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.92
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	94.9
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	94.89
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.88
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	94.85
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	94.84
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.71
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	94.55
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	94.44
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	94.39
d2awna2	232	Maltose transport protein MalK, N-terminal domain	94.35
d1g2912	240	Maltose transport protein MalK, N-terminal domain	94.34
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	94.26
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.18
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	94.15
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	94.15
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.09
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	93.99
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	93.97
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	93.93
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	93.91
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	93.91
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.85
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	93.83
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	93.78
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	93.78
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	93.77
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.75
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.72
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.71
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	93.69
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	93.61
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	93.61
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	93.56
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	93.55
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.54
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	93.54
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	93.46
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.43
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.42
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	93.38
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	93.25
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.23
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	93.17
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	93.07
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.06
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	93.04
d1z63a1	230	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	93.01
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	93.01
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	92.81
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	92.72
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	92.59
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.5
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	92.49
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	92.49
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.44
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	92.35
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	92.35
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	92.25
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	92.21
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	92.18
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	92.1
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	92.09
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	92.06
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	92.05
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.01
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	92.01
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	91.97
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	91.95
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	91.88
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	91.84
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	91.82
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.79
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	91.76
d1nrjb_	209	Signal recognition particle receptor beta-subunit	91.74
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	91.74
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	91.72
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	91.66
d2fh5b1	207	Signal recognition particle receptor beta-subunit	91.56
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	91.54
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	91.45
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	91.42
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	91.39
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.38
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.33
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	91.29
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	91.25
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	91.22
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	91.18
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	91.14
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	91.09
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	91.07
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	90.99
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	90.88
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	90.88
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	90.87
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	90.82
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	90.75
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	90.68
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	90.61
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	90.56
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	90.53
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	90.44
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	90.41
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	90.22
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	90.17
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	90.15
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	90.14
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	90.13
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	90.04
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	89.98
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	89.94
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	89.83
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	89.76
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	89.71
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	89.6
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	89.46
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	89.27
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	89.19
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	89.01
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	88.8
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	88.67
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	88.55
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	88.38
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	87.95
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	87.62
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	87.51
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	87.17
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	86.89
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	86.13
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	85.98
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	85.97
d1xpua3	289	Transcription termination factor Rho, ATPase domai	85.79
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	85.68
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	85.6
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	85.58
d1z3ix2	298	Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI	85.4
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.08
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	85.02
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	84.91
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	84.89
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	84.82
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	84.64
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	83.97
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	83.48
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	83.46
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	83.41
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	83.31
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.18
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	83.14
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	83.12
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	83.07
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	83.01
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	82.9
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	82.07
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.83
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	81.64
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	81.32
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	81.09
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	80.48

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=3.1e-27  Score=208.14  Aligned_cols=158  Identities=19%  Similarity=0.356  Sum_probs=124.3

Q ss_pred             ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee
Q psy1694          67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH  145 (247)
Q Consensus        67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~  145 (247)
                      .....|++.|++.++||+.|++.+.+++.....+-.++++|. +++|+||||||||++|+.||+.+++   .  ..+++.
T Consensus        12 ~~l~~l~~~L~~~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~---~--~~~~~~   86 (315)
T d1qvra3          12 EKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD---T--EEAMIR   86 (315)
T ss_dssp             HHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS---S--GGGEEE
T ss_pred             HHHHHHHHHhcCeEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhcC---C--CcceEE
Confidence            345678999999999999999999999987654333377997 5889999999999999999999986   3  357888


Q ss_pred             eeccc---------ccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----cc
Q psy1694         146 KFNSR---------IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----IS  212 (247)
Q Consensus       146 ~~~~~---------l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~  212 (247)
                      +++++         +.++++++++ |..  .+.+.+.+.+++++||+|||+||+++++++.|+++++++.++++    ++
T Consensus        87 ~~~~~~~~~~~~~~L~g~~~gyvG-~~~--~~~l~~~~~~~p~~Vvl~DEieK~~~~v~~~ll~~l~~g~~~~~~gr~v~  163 (315)
T d1qvra3          87 IDMTEYMEKHAVSRLIGAPPGYVG-YEE--GGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVD  163 (315)
T ss_dssp             ECTTTCCSSGGGGGC-----------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEE
T ss_pred             EeccccccchhhhhhcCCCCCCcC-ccc--CChHHHHHHhCCCcEEEEehHhhcCHHHHHHHHHHhccCceeCCCCcEec
Confidence            87644         4556667766 433  45677888999999999999999999999999999999987764    79


Q ss_pred             CCceEEEEEeCCChHHHHHH
Q psy1694         213 FQNTIFLFLSNSGGTEIMNT  232 (247)
Q Consensus       213 ~~~~ifI~tSN~g~~~i~~~  232 (247)
                      +++++||+|||.|++.|.+.
T Consensus       164 ~~~~i~i~tsnlG~~~i~~~  183 (315)
T d1qvra3         164 FRNTVIILTSNLGSPLILEG  183 (315)
T ss_dssp             CTTEEEEEECCTTHHHHHHH
T ss_pred             CcceEEEEecccChHHHhhh
Confidence            99999999999999988654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=7.6e-26  Score=199.14  Aligned_cols=157  Identities=20%  Similarity=0.296  Sum_probs=126.3

Q ss_pred             ccHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhccccCCCCCccee
Q psy1694          67 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH  145 (247)
Q Consensus        67 ~~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~  145 (247)
                      .+++.|++.|++.++||+.|++.+..++..+..+-.++++|. +++|+||||||||++|+.||+.+..        +|+.
T Consensus        11 ~~l~~l~~~L~~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~--------~~i~   82 (315)
T d1r6bx3          11 DTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI--------ELLR   82 (315)
T ss_dssp             HHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC--------EEEE
T ss_pred             HHHHHHHHHhCCeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhccC--------CeeE
Confidence            346789999999999999999999999987654333367887 5899999999999999999998654        7999


Q ss_pred             eecccc---------cCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----cc
Q psy1694         146 KFNSRI---------HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----IS  212 (247)
Q Consensus       146 ~~~~~l---------~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~  212 (247)
                      ++++++         .++.+++++ +..  .+.+.+.+..+++++++|||+||+++++++.|+++|+++.++++    +|
T Consensus        83 ~d~s~~~~~~~~~~l~g~~~gy~g-~~~--~~~l~~~~~~~~~~vvl~DeieKa~~~V~~~lLqild~G~ltd~~Gr~vd  159 (315)
T d1r6bx3          83 FDMSEYMERHTVSRLIGAPPGYVG-FDQ--GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKAD  159 (315)
T ss_dssp             EEGGGCSSSSCCSSSCCCCSCSHH-HHH--TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEE
T ss_pred             eccccccchhhhhhhcccCCCccc-ccc--CChhhHHHHhCccchhhhcccccccchHhhhhHHhhccceecCCCCCccC
Confidence            998655         345566666 322  34566778899999999999999999999999999999998765    59


Q ss_pred             CCceEEEEEeCCChHHHHHHHH
Q psy1694         213 FQNTIFLFLSNSGGTEIMNTFL  234 (247)
Q Consensus       213 ~~~~ifI~tSN~g~~~i~~~~~  234 (247)
                      ++++|+|+|||.|...+.+...
T Consensus       160 f~n~iiI~Tsnig~~~i~~~~~  181 (315)
T d1r6bx3         160 FRNVVLVMTTNAGVRETERKSI  181 (315)
T ss_dssp             CTTEEEEEEECSSCC-------
T ss_pred             ccceEEEeccchhhHHHHhhhc
Confidence            9999999999999887765443

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=99.75  E-value=1.9e-18  Score=154.09  Aligned_cols=147  Identities=20%  Similarity=0.202  Sum_probs=96.6

Q ss_pred             cHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc---------------------ccCCCCC-eEEEEeecCCChHHHHHH
Q psy1694          68 NVRVLEEQLKQHVHGQELAISHICGALKNHFQN---------------------RYHNTKA-LAISLHGLPGTGKNYVTD  125 (247)
Q Consensus        68 ~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~---------------------~~~~~kp-l~lll~G~~GtGKt~~A~  125 (247)
                      ..+.+.+.|++.|+||+.|++.+..++++++..                     -.++.+| -++||.||||||||.+|+
T Consensus         7 tP~ei~~~L~~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk   86 (364)
T d1um8a_           7 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQ   86 (364)
T ss_dssp             CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHH
T ss_pred             CHHHHHHHhCCeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHH
Confidence            467899999999999999999999988643221                     0012333 469999999999999999


Q ss_pred             HHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHH-HHHHHHH---HHHHhCCCeEEEEeCCCC------------
Q psy1694         126 FIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRL-QLTNWII---SNVTACDRAIFIFDEVDK------------  189 (247)
Q Consensus       126 ~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~-~l~~~~~---~~l~~~~~~vlilDEiek------------  189 (247)
                      .||+.+.        .||+.++++++  .++++++...+ .+.+.+.   +.+...++++++|||+|+            
T Consensus        87 ~LA~~~~--------~~~ir~D~s~~--~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~  156 (364)
T d1um8a_          87 TLAKHLD--------IPIAISDATSL--TEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITR  156 (364)
T ss_dssp             HHHHHTT--------CCEEEEEGGGC--C--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-----------
T ss_pred             HHHhhcc--------cceeehhhhhc--ccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhccccccccccc
Confidence            9999853        48999999876  44555552211 1122211   125566789999999999            


Q ss_pred             --CChhhHHHHHhhcccCc--ccc----cccCCceEEEEEeCC
Q psy1694         190 --FPKGLLDVIIPFIDHHA--VYN----QISFQNTIFLFLSNS  224 (247)
Q Consensus       190 --~~~~~~~~Ll~~Le~~~--~~~----~~~~~~~ifI~tSN~  224 (247)
                        .++++++.|++.+|.+.  .++    ..+++++++|.|+|.
T Consensus       157 d~a~~~V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i  199 (364)
T d1um8a_         157 DVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDI  199 (364)
T ss_dssp             ---CHHHHHHHHHHHHCCEEC---------------CEECTTC
T ss_pred             cccchHHHHhhhhhhcCceeccCCCCCCcCCcceeEEEeehhh
Confidence              67789999999999654  222    247888999988887

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.75  E-value=4.2e-18  Score=148.71  Aligned_cols=146  Identities=19%  Similarity=0.267  Sum_probs=97.0

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc-----ccCC-CCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCc
Q psy1694          69 VRVLEEQLKQHVHGQELAISHICGALKNHFQN-----RYHN-TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR  142 (247)
Q Consensus        69 ~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~-----~~~~-~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~  142 (247)
                      .+++++.|+++|+||+.|++.+..++.++...     +..+ ..|.+++|+||||||||++|+++|+.+..        +
T Consensus         5 p~~i~~~L~~~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~--------~   76 (309)
T d1ofha_           5 PREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA--------P   76 (309)
T ss_dssp             HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC--------C
T ss_pred             HHHHHHHhcCcccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhcccc--------c
Confidence            57889999999999999999999998654221     1101 13457899999999999999999998644        8


Q ss_pred             ceeeecccccCCCC--ChHHHHHHHHHHHHHHHH-HhCCCeEEEEeCCCCCChh------------hHHHHHhhcccCcc
Q psy1694         143 FVHKFNSRIHFPNE--NHVSLYRLQLTNWIISNV-TACDRAIFIFDEVDKFPKG------------LLDVIIPFIDHHAV  207 (247)
Q Consensus       143 ~v~~~~~~l~~~~~--~~v~~~~~~l~~~~~~~l-~~~~~~vlilDEiek~~~~------------~~~~Ll~~Le~~~~  207 (247)
                      |+.++++++.....  +..+..-+.+.....+.. ..+..+||||||+|++.+.            +++.|+..+|....
T Consensus        77 ~~~i~~s~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~~~dg~~~  156 (309)
T d1ofha_          77 FIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTV  156 (309)
T ss_dssp             EEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEE
T ss_pred             hhcccccccccceeEeeeccccccccchhhhcccccccCCceEEehhhhhhhhhccCcccchhhhHHHHHhhHHhcCCEE
Confidence            99999988743321  111111111111111100 0112489999999999763            67778888886543


Q ss_pred             ccc---ccCCceEEEEEe
Q psy1694         208 YNQ---ISFQNTIFLFLS  222 (247)
Q Consensus       208 ~~~---~~~~~~ifI~tS  222 (247)
                      ...   ++.++.+||++.
T Consensus       157 ~~~~~~i~~s~ilfi~~g  174 (309)
T d1ofha_         157 STKHGMVKTDHILFIASG  174 (309)
T ss_dssp             EETTEEEECTTCEEEEEE
T ss_pred             ecCCeEEEccceeEEecc
Confidence            222   366777888763

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.63  E-value=9.3e-16  Score=129.64  Aligned_cols=145  Identities=17%  Similarity=0.142  Sum_probs=101.3

Q ss_pred             cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc-------
Q psy1694          80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH-------  152 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~-------  152 (247)
                      .+||+.+++.+.+.+++....+.      .+++.||+||||+++|++|++  ++   .+...+++.++|..+.       
T Consensus         2 ~v~~S~~~~~~~~~~~~~a~~~~------pvlI~Ge~GtGK~~~A~~ih~--~s---~~~~~~~~~~~~~~~~~~~~~~~   70 (247)
T d1ny5a2           2 YVFESPKMKEILEKIKKISCAEC------PVLITGESGVGKEVVARLIHK--LS---DRSKEPFVALNVASIPRDIFEAE   70 (247)
T ss_dssp             CCCCSHHHHHHHHHHHHHTTCCS------CEEEECSTTSSHHHHHHHHHH--HS---TTTTSCEEEEETTTSCHHHHHHH
T ss_pred             eEecCHHHHHHHHHHHHHhCCCC------CEEEECCCCcCHHHHHHHHHH--hc---CCcccccccchhhhhhhcccHHH
Confidence            68999999999999998776554      579999999999999999965  45   5556788888875541       


Q ss_pred             --CCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc----ccCCceEEEEEeCCCh
Q psy1694         153 --FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSGG  226 (247)
Q Consensus       153 --~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~----~~~~~~ifI~tSN~g~  226 (247)
                        +...+.+...    .....+.+..+.++++||||||.+|+..|.+|+++|+++.+..-    ....++-+|++||.. 
T Consensus        71 lfg~~~~~~~~~----~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~~~~~~~~~~~RlI~~s~~~-  145 (247)
T d1ny5a2          71 LFGYEKGAFTGA----VSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRN-  145 (247)
T ss_dssp             HHCBCTTSSTTC----CSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSC-
T ss_pred             hcCcccCCcCCc----ccccCCHHHccCCCEEEEeChHhCCHHHHHHHHHHHHhCCEEECCCCCceecCeEEEEecCCC-
Confidence              1111000000    00012356778889999999999999999999999998654321    111244588888764 


Q ss_pred             HHHHHHHHHHHHcCcccccC
Q psy1694         227 TEIMNTFLELRKSGERYITI  246 (247)
Q Consensus       227 ~~i~~~~~~~~~~g~~Re~~  246 (247)
                            +.+..++|.+|+||
T Consensus       146 ------l~~l~~~~~f~~~L  159 (247)
T d1ny5a2         146 ------IKELVKEGKFREDL  159 (247)
T ss_dssp             ------HHHHHHTTSSCHHH
T ss_pred             ------HHHHHHcCCCcHHH
Confidence                  34556677777654

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.57  E-value=2e-14  Score=119.42  Aligned_cols=127  Identities=16%  Similarity=0.189  Sum_probs=87.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++||+.+++.+..++........   .+-.++|+||||||||++|+++|+++..        ++..++.+..     ..
T Consensus        10 divGqe~~~~~l~~~i~~~~~~~~---~~~~~L~~GPpGtGKT~lA~~la~~~~~--------~~~~~~~~~~-----~~   73 (238)
T d1in4a2          10 EFIGQENVKKKLSLALEAAKMRGE---VLDHVLLAGPPGLGKTTLAHIIASELQT--------NIHVTSGPVL-----VK   73 (238)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHHHTC---CCCCEEEESSTTSSHHHHHHHHHHHHTC--------CEEEEETTTC-----CS
T ss_pred             HcCChHHHHHHHHHHHHHHHhcCC---CCCeEEEECCCCCcHHHHHHHHHhccCC--------CcccccCccc-----cc
Confidence            489999999999988876543221   2226899999999999999999999644        4554443222     11


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCccccc-----------ccCCceEEEEEeCCChH
Q psy1694         159 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ-----------ISFQNTIFLFLSNSGGT  227 (247)
Q Consensus       159 v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~-----------~~~~~~ifI~tSN~g~~  227 (247)
                      .+    .+...+   .....+.++++||++++++..++.++..++.+.....           ....+++||+++|....
T Consensus        74 ~~----~~~~~~---~~~~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~at~~~~~  146 (238)
T d1in4a2          74 QG----DMAAIL---TSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGL  146 (238)
T ss_dssp             HH----HHHHHH---HHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGG
T ss_pred             HH----HHHHHH---HhhccCCchHHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccccccCCCCeEEEEecCCCcc
Confidence            11    111112   1234568999999999999999999999988653211           13457899999988655


Q ss_pred             H
Q psy1694         228 E  228 (247)
Q Consensus       228 ~  228 (247)
                      .
T Consensus       147 ~  147 (238)
T d1in4a2         147 L  147 (238)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.56  E-value=4.6e-15  Score=125.22  Aligned_cols=134  Identities=7%  Similarity=0.118  Sum_probs=86.9

Q ss_pred             HHhhcCChHHHHHHHHHHHHHhhhccc-CCCC-CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          76 LKQHVHGQELAISHICGALKNHFQNRY-HNTK-ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        76 L~~~l~Gq~~a~~~l~~~l~~~~~~~~-~~~k-pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      +...++|+.+.++.+.+.....+.... .... |..+||+||||||||++|++||+.+.        .+|+.+++++...
T Consensus         7 ~~~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~--------~~~~~i~~~~~~~   78 (246)
T d1d2na_           7 IMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN--------FPFIKICSPDKMI   78 (246)
T ss_dssp             CTTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT--------CSEEEEECGGGCT
T ss_pred             hccCCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhccc--------ccccccccccccc
Confidence            445689988888888877775543211 1223 34699999999999999999999853        3889988776432


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC----------ChhhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF----------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  223 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~----------~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN  223 (247)
                      ...+  ......+...+ ....++..+|+||||+|++          ...+.+.|+..++....    ..+++++|+|||
T Consensus        79 g~~~--~~~~~~i~~if-~~A~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~----~~~~v~vi~tTn  151 (246)
T d1d2na_          79 GFSE--TAKCQAMKKIF-DDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPP----QGRKLLIIGTTS  151 (246)
T ss_dssp             TCCH--HHHHHHHHHHH-HHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCS----TTCEEEEEEEES
T ss_pred             cccc--cchhhhhhhhh-hhhhhcccceeehhhhhhHhhhcccccchhHHHHHHHHHHhcCCCc----cccceeeeeccC
Confidence            2211  11111222222 2334555689999999764          23456778877776421    235778999999


Q ss_pred             C
Q psy1694         224 S  224 (247)
Q Consensus       224 ~  224 (247)
                      .
T Consensus       152 ~  152 (246)
T d1d2na_         152 R  152 (246)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.52  E-value=5.3e-14  Score=116.96  Aligned_cols=125  Identities=13%  Similarity=0.161  Sum_probs=83.7

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++||+.+++.+...+..+.....   .+-.++|+||||||||++|+++|+.+..        ++...+.+..     ..
T Consensus        10 divGq~~~~~~L~~~i~~~~~~~~---~~~~~Ll~GPpG~GKTtla~~la~~~~~--------~~~~~~~~~~-----~~   73 (239)
T d1ixsb2          10 EYIGQERLKQKLRVYLEAAKARKE---PLEHLLLFGPPGLGKTTLAHVIAHELGV--------NLRVTSGPAI-----EK   73 (239)
T ss_dssp             GSCSCHHHHHHHHHHHHHHTTSSS---CCCCEEEECCTTSCHHHHHHHHHHHHTC--------CEEEEETTTC-----CS
T ss_pred             HhCCHHHHHHHHHHHHHHHHhcCC---CCCeEEEECCCCCCHHHHHHHHHHHhCC--------CeEeccCCcc-----cc
Confidence            389999999999888775432221   2336899999999999999999998644        4555554332     11


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccc-----------cccCCceEEEEEeCCC
Q psy1694         159 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-----------QISFQNTIFLFLSNSG  225 (247)
Q Consensus       159 v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~-----------~~~~~~~ifI~tSN~g  225 (247)
                      .+..    ...+..  ....++++++||+++++...++.++..+++.....           ..+..+.+||+++|..
T Consensus        74 ~~~~----~~~~~~--~~~~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  145 (239)
T d1ixsb2          74 PGDL----AAILAN--SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRP  145 (239)
T ss_dssp             HHHH----HHHHHT--TCCTTCEEEEETGGGCCHHHHHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEEEESCC
T ss_pred             chhh----HHHHHh--hccCCCeeeeecccccchhHHHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEEeeccCc
Confidence            1111    111211  11235799999999999999999999998653210           1245667788887753

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.50  E-value=5.5e-14  Score=116.28  Aligned_cols=126  Identities=16%  Similarity=0.252  Sum_probs=87.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++||+.+++.+.+.+...    .   .| .++|+||||+|||++|+++|+.+..   .....+++.++++...+     
T Consensus        25 diig~~~~~~~l~~~i~~~----~---~~-~lll~Gp~G~GKTtla~~iak~l~~---~~~~~~~~e~n~s~~~~-----   88 (231)
T d1iqpa2          25 DIVGQEHIVKRLKHYVKTG----S---MP-HLLFAGPPGVGKTTAALALARELFG---ENWRHNFLELNASDERG-----   88 (231)
T ss_dssp             TCCSCHHHHHHHHHHHHHT----C---CC-EEEEESCTTSSHHHHHHHHHHHHHG---GGHHHHEEEEETTCHHH-----
T ss_pred             HccCcHHHHHHHHHHHHcC----C---CC-eEEEECCCCCcHHHHHHHHHHHHHh---cccCCCeeEEecCcccc-----
Confidence            4999999998888777642    1   22 5899999999999999999999876   33344566776644211     


Q ss_pred             HHHHHHHHHHHHH-HHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694         159 VSLYRLQLTNWII-SNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  227 (247)
Q Consensus       159 v~~~~~~l~~~~~-~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~  227 (247)
                      +............ .........++++||++.++...++.|+++++++.       .+.+||+++|....
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~~-------~~~~~i~~~n~~~~  151 (231)
T d1iqpa2          89 INVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFS-------SNVRFILSCNYSSK  151 (231)
T ss_dssp             HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCGGG
T ss_pred             hhHHHHHHHHHHhhhhccCCCceEEeehhhhhcchhHHHHHhhhcccCC-------cceEEEeccCChhh
Confidence            1101111111110 11123355899999999999999999999999875       67889999887543

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=3.1e-14  Score=119.06  Aligned_cols=129  Identities=16%  Similarity=0.226  Sum_probs=81.8

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec----------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN----------  148 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~----------  148 (247)
                      .++||+.+++.+.+.+...    .   -|-.++|+||||+|||++|+++++.++...........+..+|          
T Consensus        13 dlig~~~~~~~L~~~i~~~----~---~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~   85 (239)
T d1njfa_          13 DVVGQEHVLTALANGLSLG----R---IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVD   85 (239)
T ss_dssp             GSCSCHHHHHHHHHHHHTT----C---CCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHTCCTT
T ss_pred             HccChHHHHHHHHHHHHcC----C---CCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccchHHHHHHcCCCCe
Confidence            4999999998887766531    1   2446899999999999999999999876210000000111111          


Q ss_pred             -ccccCCCCChHHHHHHHHHHHHHHHHHh----CCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeC
Q psy1694         149 -SRIHFPNENHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  223 (247)
Q Consensus       149 -~~l~~~~~~~v~~~~~~l~~~~~~~l~~----~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN  223 (247)
                       .++.......++    .+.+.+ +.+..    ....++||||+|+|+++.|++|++.||++.       .+++||++||
T Consensus        86 ~~~~~~~~~~~i~----~ir~~~-~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~-------~~~~~il~tn  153 (239)
T d1njfa_          86 LIEIDAASRTKVE----DTRDLL-DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-------EHVKFLLATT  153 (239)
T ss_dssp             EEEEETTCSSSHH----HHHHHH-HSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCC-------TTEEEEEEES
T ss_pred             EEEecchhcCCHH----HHHHHH-HHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCC-------CCeEEEEEcC
Confidence             011111111222    122222 21211    234799999999999999999999999876       7889999998


Q ss_pred             CCh
Q psy1694         224 SGG  226 (247)
Q Consensus       224 ~g~  226 (247)
                      .-.
T Consensus       154 ~~~  156 (239)
T d1njfa_         154 DPQ  156 (239)
T ss_dssp             CGG
T ss_pred             Ccc
Confidence            643

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=99.45  E-value=9.4e-14  Score=117.11  Aligned_cols=133  Identities=15%  Similarity=0.156  Sum_probs=84.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .|.|.+.+++.+.+.+.- +..+.     ....|..+||+||||||||++|+++|+.+.        .+++.++++.+..
T Consensus        10 di~G~~~~k~~l~~~i~~-l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~--------~~~~~i~~~~l~~   80 (247)
T d1ixza_          10 DVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--------VPFITASGSDFVE   80 (247)
T ss_dssp             GCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT--------CCEEEEEHHHHHH
T ss_pred             HHccHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcC--------CCEEEEEhHHhhh
Confidence            388999988888765532 21110     123566899999999999999999998743        4788998877643


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCceEEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFL  219 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI  219 (247)
                      ...   +.-...+...+ ........+||||||+|.+-.              .+.+.|+..|+.-.     +..+.++|
T Consensus        81 ~~~---g~~~~~l~~~f-~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~-----~~~~vivi  151 (247)
T d1ixza_          81 MFV---GVGAARVRDLF-ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----KDTAIVVM  151 (247)
T ss_dssp             SCT---THHHHHHHHHH-HHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC-----TTCCEEEE
T ss_pred             ccc---cHHHHHHHHHH-HHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCC-----CCCCEEEE
Confidence            222   22222233222 223344558999999986521              24666777777422     22567888


Q ss_pred             EEeCCChHHHH
Q psy1694         220 FLSNSGGTEIM  230 (247)
Q Consensus       220 ~tSN~g~~~i~  230 (247)
                      +|||. .+.+.
T Consensus       152 ~tTn~-~~~ld  161 (247)
T d1ixza_         152 AATNR-PDILD  161 (247)
T ss_dssp             EEESC-GGGSC
T ss_pred             EeCCC-ccccC
Confidence            89987 44443

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=2.5e-13  Score=115.03  Aligned_cols=129  Identities=16%  Similarity=0.177  Sum_probs=85.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .+.|.+.+++.+.+.+.- +..+.     ....|..+||+||||||||++|+++|+.+.        .+++.++++.+..
T Consensus        13 Di~Gl~~~k~~l~e~v~~-~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~--------~~~~~i~~~~l~~   83 (256)
T d1lv7a_          13 DVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--------VPFFTISGSDFVE   83 (256)
T ss_dssp             GSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT--------CCEEEECSCSSTT
T ss_pred             HHhchHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcC--------CCEEEEEhHHhhh
Confidence            489999999888776642 22211     123467899999999999999999998853        3889998887754


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh--------------hhHHHHHhhcccCcccccccCCceEEE
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFL  219 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~--------------~~~~~Ll~~Le~~~~~~~~~~~~~ifI  219 (247)
                      ...+.   -...+...+ ...+....+++||||+|.+-.              .+.+.++..++...     +..+.++|
T Consensus        84 ~~~g~---~~~~l~~~f-~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~-----~~~~v~vI  154 (256)
T d1lv7a_          84 MFVGV---GASRVRDMF-EQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----GNEGIIVI  154 (256)
T ss_dssp             SCCCC---CHHHHHHHH-HHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC-----SSSCEEEE
T ss_pred             cchhH---HHHHHHHHH-HHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCC-----CCCCEEEE
Confidence            33222   122233333 333455668999999977421              24566777777532     22567899


Q ss_pred             EEeCCC
Q psy1694         220 FLSNSG  225 (247)
Q Consensus       220 ~tSN~g  225 (247)
                      +|||..
T Consensus       155 atTn~~  160 (256)
T d1lv7a_         155 AATNRP  160 (256)
T ss_dssp             EEESCT
T ss_pred             EeCCCc
Confidence            999964

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=1e-13  Score=114.18  Aligned_cols=122  Identities=20%  Similarity=0.246  Sum_probs=82.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++||+.+++.+.+.+..    ..   .| .++|+||||+|||++|+++++.++.   ......+...+.+..     ..
T Consensus        15 divg~~~~~~~L~~~i~~----~~---~~-~lLl~Gp~G~GKttl~~~la~~l~~---~~~~~~~~e~~~~~~-----~~   78 (227)
T d1sxjc2          15 EVYGQNEVITTVRKFVDE----GK---LP-HLLFYGPPGTGKTSTIVALAREIYG---KNYSNMVLELNASDD-----RG   78 (227)
T ss_dssp             GCCSCHHHHHHHHHHHHT----TC---CC-CEEEECSSSSSHHHHHHHHHHHHHT---TSHHHHEEEECTTSC-----CS
T ss_pred             HccCcHHHHHHHHHHHHc----CC---CC-eEEEECCCCCChhHHHHHHHHHhhc---CCCcceeEEeccccc-----CC
Confidence            499999988887776653    21   22 4789999999999999999999876   322223333433322     11


Q ss_pred             HHHHHHHHHHHHHHHHH-----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694         159 VSLYRLQLTNWIISNVT-----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  227 (247)
Q Consensus       159 v~~~~~~l~~~~~~~l~-----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~  227 (247)
                      +....    ........     .....++|+||++.++...++.|++.|++..       .+++|++++|....
T Consensus        79 ~~~~~----~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~-------~~~~~~~~~~~~~~  141 (227)
T d1sxjc2          79 IDVVR----NQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYT-------KNTRFCVLANYAHK  141 (227)
T ss_dssp             HHHHH----THHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCGGG
T ss_pred             eeeee----cchhhccccccccCCCeEEEEEeccccchhhHHHHHHHHhhhcc-------cceeeccccCcHHH
Confidence            22111    11111111     1234699999999999999999999999865       68889999886443

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=7.9e-14  Score=114.97  Aligned_cols=121  Identities=17%  Similarity=0.263  Sum_probs=82.2

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCCh
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  158 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~  158 (247)
                      .++||+.+++.+.+.+..    ..   .| .++|+||||+|||++|+.+|+.+..   ......++..+++.     ...
T Consensus        16 d~ig~~~~~~~L~~~~~~----~~---~~-~~ll~Gp~G~GKTt~a~~la~~l~~---~~~~~~~~~~n~~~-----~~~   79 (224)
T d1sxjb2          16 DIVGNKETIDRLQQIAKD----GN---MP-HMIISGMPGIGKTTSVHCLAHELLG---RSYADGVLELNASD-----DRG   79 (224)
T ss_dssp             GCCSCTHHHHHHHHHHHS----CC---CC-CEEEECSTTSSHHHHHHHHHHHHHG---GGHHHHEEEECTTS-----CCS
T ss_pred             HhcCCHHHHHHHHHHHHc----CC---CC-eEEEECCCCCCchhhHHHHHHHHhc---cccccccccccccc-----cCC
Confidence            499999888877766653    21   22 4789999999999999999999876   32222344444432     222


Q ss_pred             HHHHHHHHHHHHHHHHHh------CCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCCh
Q psy1694         159 VSLYRLQLTNWIISNVTA------CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  226 (247)
Q Consensus       159 v~~~~~~l~~~~~~~l~~------~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~  226 (247)
                      ......    ........      ....++|+||++.++...++.|+..+++..       .+++|++++|.-.
T Consensus        80 ~~~i~~----~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~-------~~~~~i~~~~~~~  142 (224)
T d1sxjb2          80 IDVVRN----QIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYS-------NSTRFAFACNQSN  142 (224)
T ss_dssp             HHHHHT----HHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTT-------TTEEEEEEESCGG
T ss_pred             ceehhh----HHHHHHHhhccCCCcceEEEEEecccccchhHHHHHhhhccccc-------cceeeeeccCchh
Confidence            221221    22222221      234799999999999999999999999865       6778888877543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=4.7e-13  Score=109.70  Aligned_cols=129  Identities=7%  Similarity=0.090  Sum_probs=78.7

Q ss_pred             ChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec-----------cc
Q psy1694          82 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN-----------SR  150 (247)
Q Consensus        82 Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~-----------~~  150 (247)
                      ++..+.+.+.+.+..-       +-|-.++|+||+|+|||++|+.+|+.+++....+.........|           ..
T Consensus         6 w~~~~~~~l~~~~~~~-------~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   78 (207)
T d1a5ta2           6 WLRPDFEKLVASYQAG-------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYT   78 (207)
T ss_dssp             GGHHHHHHHHHHHHTT-------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEE
T ss_pred             ccHHHHHHHHHHHHcC-------CcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccch
Confidence            4566666666665531       13446899999999999999999999876211111000000000           00


Q ss_pred             ccCCC-CChHHHHHHHHHHHHHHHHH----hCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCC
Q psy1694         151 IHFPN-ENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       151 l~~~~-~~~v~~~~~~l~~~~~~~l~----~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g  225 (247)
                      +.... ...+.  .+.+.. +...+.    .....++||||+|+|..+.|++|++.||+++       .+++||++||..
T Consensus        79 ~~~~~~~~~i~--~~~ir~-l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~-------~~~~fIl~t~~~  148 (207)
T d1a5ta2          79 LAPEKGKNTLG--VDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPP-------AETWFFLATREP  148 (207)
T ss_dssp             ECCCTTCSSBC--HHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCC-------TTEEEEEEESCG
T ss_pred             hhhhhcccccc--cchhhH-HhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhc-------ccceeeeeecCh
Confidence            00001 11111  111222 222222    2345799999999999999999999999986       789999998865


Q ss_pred             hH
Q psy1694         226 GT  227 (247)
Q Consensus       226 ~~  227 (247)
                      ..
T Consensus       149 ~~  150 (207)
T d1a5ta2         149 ER  150 (207)
T ss_dssp             GG
T ss_pred             hh
Confidence            43

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=2.5e-12  Score=108.66  Aligned_cols=132  Identities=17%  Similarity=0.185  Sum_probs=84.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~  153 (247)
                      .|.|.+.+++.+.+.+...+.++.     ....|..+||+||||||||++|+++|+.+.        .+++.+.++.+..
T Consensus         5 dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~--------~~~~~i~~~~l~~   76 (258)
T d1e32a2           5 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--------AFFFLINGPEIMS   76 (258)
T ss_dssp             GCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTT--------CEEEEECHHHHTT
T ss_pred             hhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhC--------CeEEEEEchhhcc
Confidence            488999999999887653222111     123566899999999999999999999843        3788888777643


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChh-----------hHHHHHhhcccCcccccccCCceEEEEEe
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKG-----------LLDVIIPFIDHHAVYNQISFQNTIFLFLS  222 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~-----------~~~~Ll~~Le~~~~~~~~~~~~~ifI~tS  222 (247)
                      ...+.   ....+...+. .......++++|||+|.+-..           +...++..++..     ....+.++|+||
T Consensus        77 ~~~g~---~~~~l~~~f~-~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~vlvi~tT  147 (258)
T d1e32a2          77 KLAGE---SESNLRKAFE-EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL-----KQRAHVIVMAAT  147 (258)
T ss_dssp             SCTTH---HHHHHHHHHH-HHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTC-----CCSSCEEEEEEE
T ss_pred             ccccc---HHHHHHHHHH-HHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccc-----cccCCccEEEeC
Confidence            33322   2223333332 233455689999999998532           334444443321     133567889999


Q ss_pred             CCChH
Q psy1694         223 NSGGT  227 (247)
Q Consensus       223 N~g~~  227 (247)
                      |....
T Consensus       148 n~~~~  152 (258)
T d1e32a2         148 NRPNS  152 (258)
T ss_dssp             SCGGG
T ss_pred             CCccc
Confidence            97543

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=1.6e-12  Score=110.48  Aligned_cols=130  Identities=15%  Similarity=0.200  Sum_probs=80.7

Q ss_pred             cCChHHHHHHHHHHHHHhhhccc-----CCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCC
Q psy1694          80 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP  154 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~-----~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~  154 (247)
                      +.|.+.+++.+.+.+...+..+.     ....|..+||+||||||||++|+++|..+.        .+|+.+.++.+...
T Consensus         9 i~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~--------~~~~~~~~~~l~~~   80 (265)
T d1r7ra3           9 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--------ANFISIKGPELLTM   80 (265)
T ss_dssp             CSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTT--------CEEEEECHHHHHTS
T ss_pred             hcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhC--------CcEEEEEHHHhhhc
Confidence            56666666666665543222110     022455799999999999999999999853        37888888776544


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCChh--------------hHHHHHhhcccCcccccccCCceEEEE
Q psy1694         155 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKG--------------LLDVIIPFIDHHAVYNQISFQNTIFLF  220 (247)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~~~--------------~~~~Ll~~Le~~~~~~~~~~~~~ifI~  220 (247)
                      ..+.   ....+...+. .......++++|||+|.+-..              +.+.++..|+.-.     +..+.++|+
T Consensus        81 ~~~~---~~~~l~~~f~-~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~~v~vi~  151 (265)
T d1r7ra3          81 WFGE---SEANVREIFD-KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----TKKNVFIIG  151 (265)
T ss_dssp             CTTT---HHHHHHHHHH-HHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC-----------CCEEEE
T ss_pred             cccc---hHHHHHHHHH-HHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcC-----CCCCEEEEE
Confidence            4332   2223333332 234455699999999977431              4566777776421     224578999


Q ss_pred             EeCCCh
Q psy1694         221 LSNSGG  226 (247)
Q Consensus       221 tSN~g~  226 (247)
                      |||...
T Consensus       152 ttn~~~  157 (265)
T d1r7ra3         152 ATNRPD  157 (265)
T ss_dssp             CCBSCT
T ss_pred             eCCCch
Confidence            998754

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.28  E-value=1.9e-12  Score=112.89  Aligned_cols=145  Identities=12%  Similarity=0.094  Sum_probs=84.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhcccc-CCC------------------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-DKG------------------  139 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~-~g~------------------  139 (247)
                      .|+||+.+++.+.-++...  ...      ++||.||||||||++|+.++..|-.-.. ++.                  
T Consensus         8 ~I~Gq~~~kral~laa~~~--~~h------~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (333)
T d1g8pa_           8 AIVGQEDMKLALLLTAVDP--GIG------GVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLS   79 (333)
T ss_dssp             GSCSCHHHHHHHHHHHHCG--GGC------CEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSC
T ss_pred             hccCcHHHHHHHHHHHhcc--CCC------eEEEECCCCccHHHHHHHHHHhCCCchhhccCccccCccccccchhhccc
Confidence            4999999888655433211  111      5799999999999999999987511000 000                  


Q ss_pred             ------CCcceeeecccccCCCC-ChHHH--HHHHHH-H-H--HHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCc
Q psy1694         140 ------TSRFVHKFNSRIHFPNE-NHVSL--YRLQLT-N-W--IISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA  206 (247)
Q Consensus       140 ------~~~~v~~~~~~l~~~~~-~~v~~--~~~~l~-~-~--~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~  206 (247)
                            ..+++....    +... ..++.  ....+. + .  -.+.+..+.++|+++||++++++.+++.|++.||++.
T Consensus        80 ~~~~~~~~~~~~~~~----~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi~~~~~~~~~aLl~~me~~~  155 (333)
T d1g8pa_          80 TNVIRKPTPVVDLPL----GVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGE  155 (333)
T ss_dssp             CCEEEECCCEEEECT----TCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSE
T ss_pred             cCcccccCceeeccC----CCCcccccCcchhhhccccCcceeeccccccccccEeecccHHHHHHHHHHHHhhhhcCCe
Confidence                  001111000    0000 00000  000000 0 0  1145666778999999999999999999999999987


Q ss_pred             ccc---cccC---CceEEEEEeCCChHHHHHHHHH
Q psy1694         207 VYN---QISF---QNTIFLFLSNSGGTEIMNTFLE  235 (247)
Q Consensus       207 ~~~---~~~~---~~~ifI~tSN~g~~~i~~~~~~  235 (247)
                      ++.   +..+   .+.++|+|+|--...+...+++
T Consensus       156 v~i~r~g~~~~~p~~f~liaa~Np~~~~l~~~llD  190 (333)
T d1g8pa_         156 NVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD  190 (333)
T ss_dssp             EEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT
T ss_pred             EEecccCceecCCCCEEEEEecCccccccccchhh
Confidence            542   2211   2567888888766555555444

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.27  E-value=5.8e-12  Score=104.58  Aligned_cols=129  Identities=15%  Similarity=0.092  Sum_probs=73.3

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcce-------------e
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV-------------H  145 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v-------------~  145 (247)
                      .++|++.+.+.+.+.+.    .+.   .+-.++|+||||||||++|+++|+.++.   .......+             .
T Consensus        12 diig~~~~~~~L~~~~~----~~~---~~~~lll~Gp~G~GKTt~~~~la~~l~~---~~~~~~~~~~~~~~~~~~~~~~   81 (252)
T d1sxje2          12 ALSHNEELTNFLKSLSD----QPR---DLPHLLLYGPNGTGKKTRCMALLESIFG---PGVYRLKIDVRQFVTASNRKLE   81 (252)
T ss_dssp             GCCSCHHHHHHHHTTTT----CTT---CCCCEEEECSTTSSHHHHHHTHHHHHSC---TTCCC-----------------
T ss_pred             HccCcHHHHHHHHHHHH----cCC---CCCeEEEECCCCCCHHHHHHHHHHhhcC---ccccccccccccccccccchhh
Confidence            39999877766654332    221   2225899999999999999999999765   22100000             0


Q ss_pred             eec------ccccC---CCCChHHHHHHHHHHHH---------HHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcc
Q psy1694         146 KFN------SRIHF---PNENHVSLYRLQLTNWI---------ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV  207 (247)
Q Consensus       146 ~~~------~~l~~---~~~~~v~~~~~~l~~~~---------~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~  207 (247)
                      ...      .....   ....... .........         ..........+++|||+|.|+...++.|+..+++.. 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~~~-  159 (252)
T d1sxje2          82 LNVVSSPYHLEITPSDMGNNDRIV-IQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYS-  159 (252)
T ss_dssp             -CCEECSSEEEECCC----CCHHH-HHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHST-
T ss_pred             hhhccCCccceeeecccccCCcce-eeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccccccchhhhccccccc-
Confidence            000      00000   0000000 000000000         000011234699999999999999999999999865 


Q ss_pred             cccccCCceEEEEEeCCC
Q psy1694         208 YNQISFQNTIFLFLSNSG  225 (247)
Q Consensus       208 ~~~~~~~~~ifI~tSN~g  225 (247)
                            .++.||+++|..
T Consensus       160 ------~~~~~Il~tn~~  171 (252)
T d1sxje2         160 ------KNIRLIMVCDSM  171 (252)
T ss_dssp             ------TTEEEEEEESCS
T ss_pred             ------ccccceeeeccc
Confidence                  678899998864

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=1.9e-12  Score=106.67  Aligned_cols=126  Identities=21%  Similarity=0.251  Sum_probs=79.7

Q ss_pred             cCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChH
Q psy1694          80 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV  159 (247)
Q Consensus        80 l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v  159 (247)
                      ++||+.+++.+.+.+.    +..   .| .++|+||||+|||++++++++.+...  .......+..+.+...     .+
T Consensus        14 iig~~~~~~~l~~~i~----~~~---~~-~lll~Gp~G~GKTtl~~~i~~~l~~~--~~~~~~~~~~~~~~~~-----~~   78 (237)
T d1sxjd2          14 VTAQDHAVTVLKKTLK----SAN---LP-HMLFYGPPGTGKTSTILALTKELYGP--DLMKSRILELNASDER-----GI   78 (237)
T ss_dssp             CCSCCTTHHHHHHHTT----CTT---CC-CEEEECSTTSSHHHHHHHHHHHHHHH--HHHTTSEEEECSSSCC-----CH
T ss_pred             ccCcHHHHHHHHHHHH----cCC---CC-eEEEECCCCCChHHHHHHHHHHHcCC--cccccchhheeccccc-----cc
Confidence            8898887776665553    221   22 47999999999999999999997651  1112233444432221     11


Q ss_pred             HHHHHHHHHH-----------HHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694         160 SLYRLQLTNW-----------IISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  227 (247)
Q Consensus       160 ~~~~~~l~~~-----------~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~  227 (247)
                      ........+.           ........+..++||||++.++...++.++..+++..       .+.+||+++|...+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~-------~~~~~i~~~~~~~~  150 (237)
T d1sxjd2          79 SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS-------GVTRFCLICNYVTR  150 (237)
T ss_dssp             HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCGGG
T ss_pred             hHHHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHHHHHHHhhcccccc-------cccccccccccccc
Confidence            1011111111           0111223345799999999999999999999999865       67788888776544

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=99.25  E-value=1.4e-11  Score=107.03  Aligned_cols=108  Identities=7%  Similarity=0.057  Sum_probs=71.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  188 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEie  188 (247)
                      +++|+||||||||.+|+++|..+-.      ..+|+.+..+++..   .+++.+...+...+.+.-.   .+++||||||
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~------~~~~~~~~~~~~~~---~~~G~~e~~~~~~f~~a~~---~~ilf~DEid  192 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGG------KDKYATVRFGEPLS---GYNTDFNVFVDDIARAMLQ---HRVIVIDSLK  192 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHT------TSCCEEEEBSCSST---TCBCCHHHHHHHHHHHHHH---CSEEEEECCT
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcC------CCCeEEEEhhHhhh---cccchHHHHHHHHHHHHhh---ccEEEeehhh
Confidence            4667999999999999999998643      34788888877653   3455555555555544322   3599999999


Q ss_pred             CCChh------------hHHHHHhhcccCcccccccCCceEEEEEeCCC--hHHHHHHH
Q psy1694         189 KFPKG------------LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG--GTEIMNTF  233 (247)
Q Consensus       189 k~~~~------------~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g--~~~i~~~~  233 (247)
                      .+...            +.+.|+.-||.-.     +.+++++|.+||..  .+.|...+
T Consensus       193 ~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~-----~~~~v~viaatN~~~~~~~i~~~~  246 (321)
T d1w44a_         193 NVIGAAGGNTTSGGISRGAFDLLSDIGAMA-----ASRGCVVIASLNPTSNDDKIVELV  246 (321)
T ss_dssp             TTC-----------CCHHHHHHHHHHHHHH-----HHHTCEEEEECCCCCCCHHHHHHH
T ss_pred             hhccccccCCCCCcchhhhhhhhhhccccc-----cCCCeEEEEeCCCcccccchhhhh
Confidence            98653            3344554444211     23578999999953  34555443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.22  E-value=2.8e-11  Score=98.34  Aligned_cols=103  Identities=9%  Similarity=0.097  Sum_probs=71.4

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhccccCCCC-CcceeeecccccCCCCChHHHHHHHHHHHHHHHHHhC----CCe
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT-SRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTAC----DRA  180 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~-~~~v~~~~~~l~~~~~~~v~~~~~~l~~~~~~~l~~~----~~~  180 (247)
                      .+..++|+||+|+|||++|..+++.+..   .... ..++.+.      |+...++  .+++++ +...+...    .+.
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~---~~~~h~D~~~i~------~~~~~I~--Id~IR~-i~~~~~~~~~~~~~K   81 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEK---FPPKASDVLEID------PEGENIG--IDDIRT-IKDFLNYSPELYTRK   81 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHT---SCCCTTTEEEEC------CSSSCBC--HHHHHH-HHHHHTSCCSSSSSE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhc---cccCCCCEEEEe------CCcCCCC--HHHHHH-HHHHHhhCcccCCCE
Confidence            4457999999999999999999998654   2222 2233332      1211111  112222 22333333    347


Q ss_pred             EEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChH
Q psy1694         181 IFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  227 (247)
Q Consensus       181 vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~  227 (247)
                      |+|+||+|+|....+++||+.|||++       .+++||++||....
T Consensus        82 viIId~ad~l~~~aqNaLLK~LEEPp-------~~t~fiLit~~~~~  121 (198)
T d2gnoa2          82 YVIVHDCERMTQQAANAFLKALEEPP-------EYAVIVLNTRRWHY  121 (198)
T ss_dssp             EEEETTGGGBCHHHHHHTHHHHHSCC-------TTEEEEEEESCGGG
T ss_pred             EEEEeCccccchhhhhHHHHHHhCCC-------CCceeeeccCChhh
Confidence            99999999999999999999999987       89999999987543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.14  E-value=3.6e-10  Score=93.58  Aligned_cols=135  Identities=16%  Similarity=0.195  Sum_probs=86.2

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc------
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH------  152 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~------  152 (247)
                      .++|++..++.+.+.+..++.++.  ..|.+++|+||||||||++++.+++.+..   . ....++..++....      
T Consensus        17 ~l~~Re~ei~~l~~~l~~~l~~~~--~~~~~lll~GppGtGKT~l~~~l~~~l~~---~-~~~~~~~~~~~~~~~~~~~~   90 (276)
T d1fnna2          17 RLPHREQQLQQLDILLGNWLRNPG--HHYPRATLLGRPGTGKTVTLRKLWELYKD---K-TTARFVYINGFIYRNFTAII   90 (276)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHSTT--SSCCEEEEECCTTSSHHHHHHHHHHHHTT---S-CCCEEEEEETTTCCSHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCC--CCCCceEEECCCCCCHHHHHHHHHHHHhc---c-cCCcEEEecchhhhhhhhhh
Confidence            488999999999999988776543  34567999999999999999999999754   2 12344555442211      


Q ss_pred             ----------CCCCChHHHHHHHHHHHHHHHH-HhCCCeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEE
Q psy1694         153 ----------FPNENHVSLYRLQLTNWIISNV-TACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFL  221 (247)
Q Consensus       153 ----------~~~~~~v~~~~~~l~~~~~~~l-~~~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~t  221 (247)
                                .+.... . .. .+...+...+ ......+.++|+++.+.....+.+...++...   ...-.+.++|++
T Consensus        91 ~~~~~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~  164 (276)
T d1fnna2          91 GEIARSLNIPFPRRGL-S-RD-EFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEAD---KLGAFRIALVIV  164 (276)
T ss_dssp             HHHHHHTTCCCCSSCC-C-HH-HHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHH---HHSSCCEEEEEE
T ss_pred             hhhHHhhhhhhhhhcc-c-hh-HHHHHHHHHHhhcccccccchhHHHHhhhhhhhhHHHHHhccc---cccccceEEeec
Confidence                      011111 0 11 1122222333 33456888899999999888777776665422   122345677888


Q ss_pred             eCCC
Q psy1694         222 SNSG  225 (247)
Q Consensus       222 SN~g  225 (247)
                      +|..
T Consensus       165 ~~~~  168 (276)
T d1fnna2         165 GHND  168 (276)
T ss_dssp             ESST
T ss_pred             CCch
Confidence            7753

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=1.4e-10  Score=93.80  Aligned_cols=116  Identities=15%  Similarity=0.180  Sum_probs=81.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~  153 (247)
                      .++|.+..++.+.+.+.+.-  ++      +++|.||||+|||.+++.+|+.+..   ...     ...++.++.+.+- 
T Consensus        23 ~~igRd~Ei~~l~~iL~r~~--k~------n~lLvG~pGVGKTalv~~LA~ri~~---~~vp~~L~~~~i~~ld~~~Li-   90 (195)
T d1jbka_          23 PVIGRDEEIRRTIQVLQRRT--KN------NPVLIGEPGVGKTAIVEGLAQRIIN---GEVPEGLKGRRVLALDMGALV-   90 (195)
T ss_dssp             CCCSCHHHHHHHHHHHTSSS--SC------EEEEECCTTSCHHHHHHHHHHHHHH---TCSCGGGTTCEEEEECHHHHH-
T ss_pred             CCcCcHHHHHHHHHHHhccC--CC------CeEEEecCCcccHHHHHHHHHHHHh---CCCCHHHcCceEEEeeHHHHh-
Confidence            48999998888887776432  12      5689999999999999999998765   221     3456666665542 


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC--------hhhHHHHHhhcccCc
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP--------KGLLDVIIPFIDHHA  206 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~--------~~~~~~Ll~~Le~~~  206 (247)
                      ...++.+.|++.+.+.+.+.....+..++|+||++.+-        .++.+.|+|+|+.+.
T Consensus        91 Ag~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg~  151 (195)
T d1jbka_          91 AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGE  151 (195)
T ss_dssp             TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTS
T ss_pred             ccCCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCCC
Confidence            22344566777666666544344456799999997762        257799999999865

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.08  E-value=1.4e-10  Score=104.98  Aligned_cols=76  Identities=21%  Similarity=0.292  Sum_probs=61.6

Q ss_pred             cHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc---ccC---CCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCC
Q psy1694          68 NVRVLEEQLKQHVHGQELAISHICGALKNHFQN---RYH---NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS  141 (247)
Q Consensus        68 ~~~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~---~~~---~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~  141 (247)
                      ..+.+.+.|++.++||+.|++.+.-++.+++..   +..   .-.|.++|+.||||||||++|+.||+.+-        .
T Consensus         4 tP~~i~~~Ld~yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~--------V   75 (443)
T d1g41a_           4 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN--------A   75 (443)
T ss_dssp             CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT--------C
T ss_pred             CHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhC--------C
Confidence            357889999999999999999999999875421   110   11366899999999999999999999853        5


Q ss_pred             cceeeecccc
Q psy1694         142 RFVHKFNSRI  151 (247)
Q Consensus       142 ~~v~~~~~~l  151 (247)
                      ||+..+|..+
T Consensus        76 PFv~~daT~f   85 (443)
T d1g41a_          76 PFIKVEATKF   85 (443)
T ss_dssp             CEEEEEGGGG
T ss_pred             CEEEeeccee
Confidence            9999999876

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=2.8e-10  Score=94.32  Aligned_cols=113  Identities=17%  Similarity=0.157  Sum_probs=67.8

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcc---------cCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecc
Q psy1694          79 HVHGQELAISHICGALKNHFQNR---------YHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS  149 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~---------~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~  149 (247)
                      .++|++.+++.|.+.+..+....         .....+..++|+||||||||++|+++|+.+..        +++.++.+
T Consensus        15 dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~--------~~~~~~~~   86 (253)
T d1sxja2          15 QVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY--------DILEQNAS   86 (253)
T ss_dssp             GCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC--------EEEEECTT
T ss_pred             HhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHh--------hhhccccc
Confidence            49999999999999887643211         00223347899999999999999999998643        44455443


Q ss_pred             cccCCCCChHHHHHHHHH-------------HHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhccc
Q psy1694         150 RIHFPNENHVSLYRLQLT-------------NWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDH  204 (247)
Q Consensus       150 ~l~~~~~~~v~~~~~~l~-------------~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~  204 (247)
                      ....     .........             .............++++||++.+....+..+..+++.
T Consensus        87 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~~~~~~~~~~  149 (253)
T d1sxja2          87 DVRS-----KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQF  149 (253)
T ss_dssp             SCCC-----HHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHH
T ss_pred             cchh-----hHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchhhhhHHHhhh
Confidence            2210     000000000             0000011223457999999999988776655555543

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=1.2e-09  Score=92.60  Aligned_cols=115  Identities=12%  Similarity=0.150  Sum_probs=78.6

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~  153 (247)
                      .++|.+.-++++.+.+.+.-  ++      +++|.||||+|||.+++.+|+.+..   ...     ...++.++.+.+.-
T Consensus        19 ~~igRd~Ei~~l~~iL~r~~--k~------n~lLVG~~GvGKTalv~~la~ri~~---~~vp~~l~~~~i~~l~~~~lia   87 (268)
T d1r6bx2          19 PLIGREKELERAIQVLCRRR--KN------NPLLVGESGVGKTAIAEGLAWRIVQ---GDVPEVMADCTIYSLDIGSLLA   87 (268)
T ss_dssp             CCCSCHHHHHHHHHHHTSSS--SC------EEEEECCTTSSHHHHHHHHHHHHHH---TCSCGGGTTCEEEECCCC---C
T ss_pred             cccChHHHHHHHHHHHhcCc--cC------CcEEECCCCCcHHHHHHHHHHHHHh---CCcccccccceeEEeeechHhc
Confidence            48999998888888775422  12      5689999999999999999998765   222     23345555544421


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC---------hhhHHHHHhhcccCc
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP---------KGLLDVIIPFIDHHA  206 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~~~~vlilDEiek~~---------~~~~~~Ll~~Le~~~  206 (247)
                       ...+.+.|++.+...+ ..+...+..++|+||++.+-         .++.+.|+|+|..+.
T Consensus        88 -g~~~~g~~e~r~~~i~-~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg~  147 (268)
T d1r6bx2          88 -GTKYRGDFEKRFKALL-KQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGK  147 (268)
T ss_dssp             -CCCCSSCHHHHHHHHH-HHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCC
T ss_pred             -cCccchhHHHHHHHHH-HHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhCCC
Confidence             1233355666665555 34566777899999998871         357889999999865

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.88  E-value=4.6e-09  Score=93.26  Aligned_cols=115  Identities=19%  Similarity=0.241  Sum_probs=65.8

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCC-----CCcceeeecccccC
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF  153 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~-----~~~~v~~~~~~l~~  153 (247)
                      .++|.+.-++.+.+.+.+.-.+        +.+|.||||+|||.++..+|..+..   ...     ...++.++.+.+. 
T Consensus        23 ~~~gr~~ei~~~~~~L~r~~k~--------n~llvG~~GvGKtaiv~~la~~i~~---~~vp~~l~~~~i~~ld~~~l~-   90 (387)
T d1qvra2          23 PVIGRDEEIRRVIQILLRRTKN--------NPVLIGEPGVGKTAIVEGLAQRIVK---GDVPEGLKGKRIVSLQMGSLL-   90 (387)
T ss_dssp             CCCSCHHHHHHHHHHHHCSSCC--------CCEEEECTTSCHHHHHHHHHHHHHH---TCSCTTSTTCEEEEECC-----
T ss_pred             CCcCcHHHHHHHHHHHhcCCCC--------CCeEECCCCCCHHHHHHHHHHHHHh---CCCCHHHcCceEEEeeHhhhh-
Confidence            4899999999999888754322        3488899999999999999987665   221     2335555554442 


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCC--------ChhhHHHHHhhcccCc
Q psy1694         154 PNENHVSLYRLQLTNWIISNVTAC-DRAIFIFDEVDKF--------PKGLLDVIIPFIDHHA  206 (247)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~l~~~-~~~vlilDEiek~--------~~~~~~~Ll~~Le~~~  206 (247)
                      ...++.+.|++.+...+.. +... +.-|+||||++.+        ..++.+.|+|+|..+.
T Consensus        91 ag~~~~g~~e~r~~~i~~~-~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~  151 (387)
T d1qvra2          91 AGAKYRGEFEERLKAVIQE-VVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGE  151 (387)
T ss_dssp             -------CHHHHHHHHHHH-HHTTCSSEEEEECCC-------------------HHHHHTTC
T ss_pred             cccCcchhHHHHHHHHHHH-hccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCCC
Confidence            1123334455555544433 3333 3567999999887        2367899999999875

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.87  E-value=3.6e-09  Score=86.53  Aligned_cols=111  Identities=13%  Similarity=0.111  Sum_probs=68.3

Q ss_pred             EEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHH----HHHHHHHHhCCCeEEEEe
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT----NWIISNVTACDRAIFIFD  185 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~----~~~~~~l~~~~~~vlilD  185 (247)
                      ++++||+|+|||++++++++.+..   .+.  ..+.+....+.       ..+...+.    ..+.+.+..  .++++||
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~---~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~--~dll~iD  104 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKK---RGY--RVIYSSADDFA-------QAMVEHLKKGTINEFRNMYKS--VDLLLLD  104 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHH---TTC--CEEEEEHHHHH-------HHHHHHHHHTCHHHHHHHHHT--CSEEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHhcc---Ccc--ceEEechHHHH-------HHHHHHHHccchhhHHHHHhh--ccchhhh
Confidence            689999999999999999999755   332  33444433321       11111111    122233333  4799999


Q ss_pred             CCCCCC--hhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHH---HHHHHHHHcC
Q psy1694         186 EVDKFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM---NTFLELRKSG  240 (247)
Q Consensus       186 Eiek~~--~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~---~~~~~~~~~g  240 (247)
                      +++.+.  +..+..|..+++.-.      -.+..+|+||+..+++++   ..+...++.|
T Consensus       105 Di~~i~~~~~~~~~lf~lin~~~------~~~~~iiits~~~p~~l~~~~~dL~SRL~~g  158 (213)
T d1l8qa2         105 DVQFLSGKERTQIEFFHIFNTLY------LLEKQIILASDRHPQKLDGVSDRLVSRFEGG  158 (213)
T ss_dssp             CGGGGTTCHHHHHHHHHHHHHHH------HTTCEEEEEESSCGGGCTTSCHHHHHHHHTS
T ss_pred             hhhhhcCchHHHHHHHHHHHHHh------hccceEEEecCCcchhccccchHHHHHhhCc
Confidence            999885  566666776666521      144578889999888765   3444444444

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.79  E-value=1.1e-07  Score=78.43  Aligned_cols=59  Identities=19%  Similarity=0.204  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccccc
Q psy1694          86 AISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH  152 (247)
Q Consensus        86 a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~  152 (247)
                      ..+.+.+.++.........++|..++|+||||||||++|++||+.+..        +|+.++.+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~--------~~~~i~~d~~~   69 (273)
T d1gvnb_          11 FENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQG--------NVIVIDNDTFK   69 (273)
T ss_dssp             HHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTT--------CCEEECTHHHH
T ss_pred             HHHHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHhhc--------ceEEEecHHHH
Confidence            334444445444444444678989999999999999999999999654        68888876654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.75  E-value=4.2e-08  Score=81.11  Aligned_cols=55  Identities=13%  Similarity=0.111  Sum_probs=41.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCe-EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl-~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+.|.+..++.+.+.+...+.....+..+. .++|+||||||||++++++++.+..
T Consensus        17 ~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~   72 (287)
T d1w5sa2          17 ELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE   72 (287)
T ss_dssp             SCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHh
Confidence            478888888888888766554433233333 4677899999999999999999754

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=98.62  E-value=9.9e-08  Score=83.77  Aligned_cols=58  Identities=12%  Similarity=-0.006  Sum_probs=39.5

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeeccc
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSR  150 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~  150 (247)
                      .+.|+...+   .++++.+..+.  | ++..++|+||||||||++|.++|+.+..        +++.++++.
T Consensus       132 ~~~~~~~~i---~~~l~~~~~~~--~-~~~~~~~~g~~~~gk~~~~~~~~~~~~~--------~~i~in~s~  189 (362)
T d1svma_         132 LLPKMDSVV---YDFLKCMVYNI--P-KKRYWLFKGPIDSGKTTLAAALLELCGG--------KALNVNLPL  189 (362)
T ss_dssp             TSTTHHHHH---HHHHHHHHHCC--T-TCCEEEEECSTTSSHHHHHHHHHHHHCC--------EEECCSSCT
T ss_pred             cccchHHHH---HHHHHHHHhCC--C-CcCeEEEECCCCCCHHHHHHHHHHHcCC--------CEEEEECcc
Confidence            355655444   34444444333  2 4448999999999999999999998643        677776654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.34  E-value=4e-06  Score=68.03  Aligned_cols=123  Identities=11%  Similarity=0.149  Sum_probs=69.7

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc-----------------c-CCCCChHHHHHHH
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI-----------------H-FPNENHVSLYRLQ  165 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l-----------------~-~~~~~~v~~~~~~  165 (247)
                      +.+|.+++|.||+|+|||+++-.||..+..   ++.+.-++..+..+.                 . ...+..   ....
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~---~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d---~~~~   81 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVD---EGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGAD---PAAV   81 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCC---HHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHH---CCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCc---HHHH
Confidence            678999999999999999999999988654   443333444432111                 0 000000   0000


Q ss_pred             HHHHHHHHHHhCCCeEEEEeCCCCCChh--hHH---HHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHH
Q psy1694         166 LTNWIISNVTACDRAIFIFDEVDKFPKG--LLD---VIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL  236 (247)
Q Consensus       166 l~~~~~~~l~~~~~~vlilDEiek~~~~--~~~---~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~  236 (247)
                      +.... ..-......++++|=.++.+.+  ..+   .+.+..+..   ....-...++++-++.+.+++++....+
T Consensus        82 ~~~~~-~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~---~~~~p~~~~LVl~a~~~~~~~~~~~~~~  153 (213)
T d1vmaa2          82 AFDAV-AHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKK---IPDAPHETLLVIDATTGQNGLVQAKIFK  153 (213)
T ss_dssp             HHHHH-HHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGT---CTTCCSEEEEEEEGGGHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhc---cccccceeEEeeccccCcchhhhhhhhc
Confidence            11111 1222345689999999998853  333   333333321   0111135678888888888887765443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.28  E-value=3.9e-06  Score=64.61  Aligned_cols=24  Identities=33%  Similarity=0.483  Sum_probs=21.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      -+++.||+|+||||+++.++..+-
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~   25 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCC
Confidence            378999999999999999999864

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.21  E-value=4.9e-06  Score=67.38  Aligned_cols=120  Identities=16%  Similarity=0.060  Sum_probs=62.9

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc-------------cCC--CCChHHHHHHHHHHH
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI-------------HFP--NENHVSLYRLQLTNW  169 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l-------------~~~--~~~~v~~~~~~l~~~  169 (247)
                      ++|.+++|.||+|+|||+++-.||..+-.   .+.+..++..+....             ..+  ...........+...
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~---~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a   86 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKK---KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRG   86 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHH---TTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHH---CCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHH
Confidence            56889999999999999999999987543   444333444432111             000  000000011111122


Q ss_pred             HHHHHHhCCCeEEEEeCCCCCChh----hHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHH
Q psy1694         170 IISNVTACDRAIFIFDEVDKFPKG----LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFL  234 (247)
Q Consensus       170 ~~~~l~~~~~~vlilDEiek~~~~----~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~  234 (247)
                      + .........++++|=.++.+-+    ....|..+.+..      .-.+.++++-++.+.+.+++...
T Consensus        87 ~-~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~------~~~~~~LVl~a~~~~~~~~~~~~  148 (211)
T d1j8yf2          87 V-EKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAI------KPDEVTLVIDASIGQKAYDLASK  148 (211)
T ss_dssp             H-HHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHH------CCSEEEEEEEGGGGGGHHHHHHH
T ss_pred             H-HHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhc------CCceEEEEEecccCcchHHHHhh
Confidence            2 2233456799999999987643    123333333321      11356777778888887766543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=1e-05  Score=65.44  Aligned_cols=122  Identities=12%  Similarity=0.139  Sum_probs=67.3

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc------------------cCCCCChHHHHHHH
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI------------------HFPNENHVSLYRLQ  165 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l------------------~~~~~~~v~~~~~~  165 (247)
                      .++|.+++|.||+|+|||+++-.||..+-.   .+...-++..+..+.                  ....+..   ....
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~---~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d---~~~~   79 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQ---QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD---SASV   79 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHT---TTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCC---HHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHH---CCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCC---HHHH
Confidence            356889999999999999999999987543   443222222221000                  0000000   1111


Q ss_pred             HHHHHHHHHHhCCCeEEEEeCCCCCChh--h---HHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHH
Q psy1694         166 LTNWIISNVTACDRAIFIFDEVDKFPKG--L---LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE  235 (247)
Q Consensus       166 l~~~~~~~l~~~~~~vlilDEiek~~~~--~---~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~  235 (247)
                      +.... .........++++|=.++++.+  .   +.++.++++..   +...-...++++-++.+.+++++....
T Consensus        80 l~~~~-~~a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~---~~~~p~~~~LVl~a~~~~~~~~~~~~~  150 (211)
T d2qy9a2          80 IFDAI-QAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKL---DVEAPHEVMLTIDASTGQNAVSQAKLF  150 (211)
T ss_dssp             HHHHH-HHHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTT---CTTCCSEEEEEEEGGGTHHHHHHHHHH
T ss_pred             HHHHH-HHHHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhh---cccCcceeeeehhcccCcchHHHHhhh
Confidence            11111 2223345689999999998753  3   33444444321   111113567777788888888776533

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.15  E-value=1.1e-05  Score=65.11  Aligned_cols=122  Identities=9%  Similarity=0.022  Sum_probs=66.7

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHH--------------------H
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYR--------------------L  164 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~--------------------~  164 (247)
                      .+|.+++|.||+|+|||+++-.||..+..   .|.+.-++..+.     ...+.+++.+                    .
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~---~g~kV~lit~Dt-----~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~   75 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQN---LGKKVMFCAGDT-----FRAAGGTQLSEWGKRLSIPVIQGPEGTDPAA   75 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHT---TTCCEEEECCCC-----SSTTHHHHHHHHHHHHTCCEECCCTTCCHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHH---CCCcEEEEEecc-----ccccchhhHhhcccccCceEEeccCCccHHH
Confidence            46778999999999999999999987544   443222222221     1111111111                    1


Q ss_pred             HHHHHHHHHHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHH
Q psy1694         165 QLTNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE  235 (247)
Q Consensus       165 ~l~~~~~~~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~  235 (247)
                      .+.+.. .........++++|=+++.+.  .....+..+.+.....+...-.+.++++-++.+.+++.+....
T Consensus        76 ~~~~~~-~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~  147 (207)
T d1okkd2          76 LAYDAV-QAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKF  147 (207)
T ss_dssp             HHHHHH-HHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHH
T ss_pred             HHHHHH-HHHHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHh
Confidence            111111 112233568999999999875  3333333332211001111114567888888988888776543

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.05  E-value=1e-05  Score=61.80  Aligned_cols=30  Identities=17%  Similarity=0.167  Sum_probs=25.9

Q ss_pred             eEEEEEeCCChHHHHHHHHHHHHcCccccc
Q psy1694         216 TIFLFLSNSGGTEIMNTFLELRKSGERYIT  245 (247)
Q Consensus       216 ~ifI~tSN~g~~~i~~~~~~~~~~g~~Re~  245 (247)
                      ..+|-|+|...+++.+.+.+.+++++.|=|
T Consensus       147 ~~~idt~~~~~ee~~~~I~~~l~~~~~rl~  176 (176)
T d1zp6a1         147 HHVLPVSGKDTDQALQSAINALQSGRFRID  176 (176)
T ss_dssp             GGEEECTTCCTTTTTTTTHHHHHHTTSCCC
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHcCCcCCC
Confidence            356789999999999999999999999854

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.04  E-value=2.8e-05  Score=62.60  Aligned_cols=115  Identities=10%  Similarity=0.103  Sum_probs=65.1

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccc------------------cCCCCChHHHHHHHH
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI------------------HFPNENHVSLYRLQL  166 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l------------------~~~~~~~v~~~~~~l  166 (247)
                      +++.+++|.||+|+|||+++-.||..+-.   ++.+.-++..+....                  ....+....   . .
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~---~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~---~-~   80 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKG---KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPE---S-I   80 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHH---TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHH---H-H
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHH---CCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhh---H-H
Confidence            45667899999999999999999988654   443322333322100                  000011101   0 1


Q ss_pred             HHHHHHHHHhCCCeEEEEeCCCCCCh--hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHH
Q psy1694         167 TNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT  232 (247)
Q Consensus       167 ~~~~~~~l~~~~~~vlilDEiek~~~--~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~  232 (247)
                      ..............++++|=+++.+.  .....|..+.+...      -...++++-++.+.+.+++.
T Consensus        81 ~~~~~~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~------~~~~llv~~a~~~~~~~~~~  142 (207)
T d1ls1a2          81 RRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLLVLDAMTGQEALSVA  142 (207)
T ss_dssp             HHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC------CSEEEEEEEGGGTHHHHHHH
T ss_pred             HHHHHHHHhhccCcceeecccccchhhhhhHHHHHHHHhhcC------CceEEEEeccccchhHHHHH
Confidence            11111222334558999999998875  44444444433311      14567888888888887644

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.98  E-value=2.4e-06  Score=65.36  Aligned_cols=30  Identities=20%  Similarity=0.354  Sum_probs=26.4

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +.++.+++|+|+||+||||+|+.||+.|..
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            346778999999999999999999999754

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.93  E-value=9.2e-05  Score=59.87  Aligned_cols=42  Identities=19%  Similarity=0.277  Sum_probs=32.2

Q ss_pred             hhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694          78 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus        78 ~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +.++|.+..++.+.+.      ...      .++++||+|+|||++++.+++.+
T Consensus        12 ~~f~GR~~el~~l~~~------~~~------~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          12 KDFFDREKEIEKLKGL------RAP------ITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             GGSCCCHHHHHHHHHT------CSS------EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hhCCChHHHHHHHHhc------cCC------EEEEEcCCCCcHHHHHHHHHHHC
Confidence            3589998887776531      112      67899999999999999998774

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.93  E-value=8.1e-05  Score=58.26  Aligned_cols=27  Identities=26%  Similarity=0.459  Sum_probs=24.3

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      |+.++++|.||+||||+|+.|++.+-.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~   28 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNF   28 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            778999999999999999999998643

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=97.89  E-value=2.6e-06  Score=68.37  Aligned_cols=110  Identities=22%  Similarity=0.269  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHH
Q psy1694          87 ISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQL  166 (247)
Q Consensus        87 ~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l  166 (247)
                      ......+++.++.+.  |++ ..++|+|||+||||++|.+|.+.+.+   ..  .+++   -+..+|      .      
T Consensus        36 ~~~Fl~~l~~~l~~~--PKk-n~i~~~GP~~TGKS~f~~sl~~~l~G---~v--is~~---N~~s~F------~------   92 (205)
T d1tuea_          36 FITFLGALKSFLKGT--PKK-NCLVFCGPANTGKSYFGMSFIHFIQG---AV--ISFV---NSTSHF------W------   92 (205)
T ss_dssp             HHHHHHHHHHHHHTC--TTC-SEEEEESCGGGCHHHHHHHHHHHHTC---EE--CCCC---CSSSCG------G------
T ss_pred             HHHHHHHHHHHHcCC--CCc-eEEEEECCCCccHHHHHHHHHHHhCC---EE--Eecc---CCCCCc------c------
Confidence            334556666666443  334 57899999999999999999888654   11  0111   111111      0      


Q ss_pred             HHHHHHHHHh-CCCeEEEEeCCCCCChhhHHH-HHhhcccCcccc------cccCCceEEEEEeCCCh
Q psy1694         167 TNWIISNVTA-CDRAIFIFDEVDKFPKGLLDV-IIPFIDHHAVYN------QISFQNTIFLFLSNSGG  226 (247)
Q Consensus       167 ~~~~~~~l~~-~~~~vlilDEiek~~~~~~~~-Ll~~Le~~~~~~------~~~~~~~ifI~tSN~g~  226 (247)
                             +.. .+..++++||+........+. ++.+++...+..      .+......+|+|||...
T Consensus        93 -------Lq~l~~~kv~l~dD~t~~~~~~~d~~lK~ll~G~~vsvd~KhK~~vqi~~pPliITsN~~~  153 (205)
T d1tuea_          93 -------LEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHP  153 (205)
T ss_dssp             -------GGGGTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCT
T ss_pred             -------cccccCCeEEEEeccccchHHHHHHHHHhccCCCeeeeecccCCcccccCCCEEEEcCCCC
Confidence                   112 234688999997777666676 455666543321      23444556899999754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.85  E-value=4.7e-06  Score=63.72  Aligned_cols=26  Identities=35%  Similarity=0.714  Sum_probs=24.0

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +|+.++|.||||+||||+|+.|++.+
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            66789999999999999999999985

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=4.1e-06  Score=62.77  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=21.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +++|.||||+||||+|+.||+.|
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            46788999999999999999996

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=9.7e-05  Score=64.09  Aligned_cols=28  Identities=14%  Similarity=0.319  Sum_probs=23.8

Q ss_pred             CCeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694         178 DRAIFIFDEVDKFPKGLLDVIIPFIDHH  205 (247)
Q Consensus       178 ~~~vlilDEiek~~~~~~~~Ll~~Le~~  205 (247)
                      +..++|+||+..++......++..+..+
T Consensus       261 ~~d~lIIDEaSmv~~~l~~~ll~~~~~~  288 (359)
T d1w36d1         261 HLDVLVVDEASMIDLPMMSRLIDALPDH  288 (359)
T ss_dssp             SCSEEEECSGGGCBHHHHHHHHHTCCTT
T ss_pred             ccceeeehhhhccCHHHHHHHHHHhcCC
Confidence            3489999999999999989999887653

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.80  E-value=7.1e-06  Score=64.47  Aligned_cols=28  Identities=29%  Similarity=0.389  Sum_probs=25.5

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ..||.++++.||||+||||+|+.||+++
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4588899999999999999999999984

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=8.3e-06  Score=63.44  Aligned_cols=30  Identities=23%  Similarity=0.329  Sum_probs=26.3

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ..++.+++|+|+||+||||+|+.||+.+..
T Consensus        16 ~~~g~vI~L~G~pGSGKTTiAk~La~~l~~   45 (195)
T d1x6va3          16 GFRGCTVWLTGLSGAGKTTVSMALEEYLVC   45 (195)
T ss_dssp             SCCCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            347788999999999999999999999754

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.72  E-value=9e-06  Score=63.69  Aligned_cols=26  Identities=23%  Similarity=0.487  Sum_probs=24.3

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +|+.++|.||||+||||+|+.|++.+
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            68889999999999999999999985

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.71  E-value=9.7e-06  Score=61.93  Aligned_cols=25  Identities=16%  Similarity=0.320  Sum_probs=22.4

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +..++|.|||||||||+|+.||+.+
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3468999999999999999999984

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=1.8e-05  Score=60.21  Aligned_cols=27  Identities=22%  Similarity=0.370  Sum_probs=23.5

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+-.++|.||||+|||++|+.|++.+.
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            455678899999999999999999863

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.61  E-value=1.5e-05  Score=60.57  Aligned_cols=23  Identities=35%  Similarity=0.492  Sum_probs=20.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+++.||||+||||+|+.||+.+
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36789999999999999999985

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.61  E-value=1.4e-05  Score=60.39  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=21.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+++.||||+||||+|+.|++.+
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            57889999999999999999984

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.57  E-value=1.9e-05  Score=59.99  Aligned_cols=23  Identities=26%  Similarity=0.354  Sum_probs=21.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +++|.|+||+|||++|+.|++.+
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            78899999999999999999985

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.57  E-value=6e-05  Score=58.27  Aligned_cols=30  Identities=17%  Similarity=0.402  Sum_probs=26.5

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +.+|+++-+.||+|+||||+|+.|++.+..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            557888999999999999999999988654

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=2.4e-05  Score=61.22  Aligned_cols=25  Identities=32%  Similarity=0.420  Sum_probs=23.2

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      |+.+++.||||+||||.|+.||+++
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999999999984

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=2.2e-05  Score=59.84  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=22.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +++++||||||||++++.+++.+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~   27 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKS   27 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHH
Confidence            5789999999999999999999865

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.52  E-value=0.00026  Score=58.81  Aligned_cols=47  Identities=19%  Similarity=0.298  Sum_probs=37.3

Q ss_pred             hcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHH
Q psy1694          79 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus        79 ~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .++|.+.-++.+.+.+......     ...++.++|+.|+|||++|+.+.+.
T Consensus        21 ~~~gR~~~~~~i~~~L~~~~~~-----~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          21 TCYIREYHVDRVIKKLDEMCDL-----DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             CSCCCHHHHHHHHHHHHHHTTS-----SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceeCcHHHHHHHHHHHHhccCC-----CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999998888653221     2236889999999999999999765

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=97.44  E-value=6.6e-05  Score=54.67  Aligned_cols=26  Identities=27%  Similarity=0.275  Sum_probs=18.6

Q ss_pred             CCeEEEEeecCCChHHHHHH-HHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTD-FIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~-~la~~l  131 (247)
                      +....++.+|||+|||.++- .+.+..
T Consensus         6 ~~~~~il~~~tGsGKT~~~~~~~~~~~   32 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRFLPQILAEC   32 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred             cCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence            33467899999999998774 444443

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=4.3e-05  Score=59.93  Aligned_cols=28  Identities=25%  Similarity=0.342  Sum_probs=23.2

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      |.+.-+++|.||||+|||++|+.|++++
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3344467888999999999999999984

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.37  E-value=4.7e-05  Score=58.18  Aligned_cols=22  Identities=32%  Similarity=0.617  Sum_probs=19.6

Q ss_pred             EEEeecCCChHHHHHHHHHHHh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +.|.|+||+|||++++.+|+.+
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4556999999999999999996

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=97.32  E-value=0.0015  Score=47.65  Aligned_cols=25  Identities=20%  Similarity=0.084  Sum_probs=17.9

Q ss_pred             CCeEEEEeCCCCCChhhHHHHHhhc
Q psy1694         178 DRAIFIFDEVDKFPKGLLDVIIPFI  202 (247)
Q Consensus       178 ~~~vlilDEiek~~~~~~~~Ll~~L  202 (247)
                      ..+++|+||++.++......+..++
T Consensus        94 ~~~~vIiDE~H~~~~~~~~~~~~~l  118 (136)
T d1a1va1          94 AYDIIICDECHSTDATSILGIGTVL  118 (136)
T ss_dssp             CCSEEEEETTTCCSHHHHHHHHHHH
T ss_pred             cCCEEEEecccccCHHHHHHHHHHH
Confidence            4589999999999886544443333

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.31  E-value=5.4e-05  Score=58.16  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=20.0

Q ss_pred             EEEeecCCChHHHHHHHHHHHh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++|.|+||+||||+|+.+|+.|
T Consensus         5 Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4678999999999999999986

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.31  E-value=7.1e-05  Score=58.82  Aligned_cols=28  Identities=29%  Similarity=0.533  Sum_probs=24.5

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +.+.+-++|.||||+||||+|+.||+++
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence            4577778889999999999999999983

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=0.00035  Score=59.23  Aligned_cols=46  Identities=13%  Similarity=0.111  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694          86 AISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus        86 a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +.+.+......++.... ++.|.++-+.|++|+||||+|+.|+..|-
T Consensus        60 ~~~~~~~~~~~fl~~~~-~k~P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          60 SNLRRQAVLEQFLGTNG-QRIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             HHHHHHHHHHHHHTCC--CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcccC-CCCCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            33444444555665554 77899999999999999999999998863

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.29  E-value=6.8e-05  Score=57.94  Aligned_cols=23  Identities=26%  Similarity=0.419  Sum_probs=21.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .++|.||||+||||+|+.|++++
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47889999999999999999995

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.28  E-value=7.5e-05  Score=58.49  Aligned_cols=25  Identities=36%  Similarity=0.450  Sum_probs=22.8

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +|.+++|.||||+||+|.|+.|++.
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5558899999999999999999998

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.28  E-value=6.3e-05  Score=57.46  Aligned_cols=22  Identities=23%  Similarity=0.486  Sum_probs=20.4

Q ss_pred             EEEeecCCChHHHHHHHHHHHh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +.|.|+||+|||++++.||+.+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6778999999999999999996

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.28  E-value=7.6e-05  Score=59.29  Aligned_cols=26  Identities=27%  Similarity=0.529  Sum_probs=22.6

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      |++.+.+-||||+||||+|+.||+++
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            34567788999999999999999995

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.27  E-value=8.1e-05  Score=55.38  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=19.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++++|+||+|||++|+.|.+.
T Consensus         4 lIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5778999999999999988665

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.26  E-value=0.0011  Score=52.32  Aligned_cols=22  Identities=18%  Similarity=0.167  Sum_probs=18.1

Q ss_pred             EEEeecCCChHHHHHHHHHHHh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .++..|+|+|||.+|-.+++.+
T Consensus        88 ~ll~~~tG~GKT~~a~~~~~~~  109 (206)
T d2fz4a1          88 GCIVLPTGSGKTHVAMAAINEL  109 (206)
T ss_dssp             EEEEESSSTTHHHHHHHHHHHS
T ss_pred             cEEEeCCCCCceehHHhHHHHh
Confidence            3567899999999998887764

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.26  E-value=7.8e-05  Score=57.28  Aligned_cols=23  Identities=39%  Similarity=0.657  Sum_probs=21.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+++.||||+||||+|+.||+++
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            46889999999999999999984

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.20  E-value=0.00014  Score=55.28  Aligned_cols=25  Identities=20%  Similarity=0.534  Sum_probs=22.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++++.|+||+||||+++.|++.+-.
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            6889999999999999999998754

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.00012  Score=55.15  Aligned_cols=25  Identities=16%  Similarity=0.379  Sum_probs=22.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++.|+|++|+||||+++.|++.+..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~   28 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCA   28 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            5889999999999999999998766

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.19  E-value=0.00011  Score=57.14  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      -++|.||||+||||+|+.||+.+
T Consensus         5 riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           5 RAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            35678999999999999999984

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.14  E-value=0.00016  Score=57.85  Aligned_cols=30  Identities=27%  Similarity=0.444  Sum_probs=26.3

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ..++.++.|+|.||+|||++|+.|++.+..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~   50 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQLVR   50 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            347889999999999999999999988754

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.12  E-value=0.00013  Score=56.38  Aligned_cols=23  Identities=48%  Similarity=0.677  Sum_probs=20.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      -++|.||||+||||+|+.||+++
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999995

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00015  Score=55.76  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=20.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      -++|.||||+||||.|+.|++++
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999984

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.09  E-value=0.0002  Score=54.71  Aligned_cols=25  Identities=24%  Similarity=0.324  Sum_probs=22.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .++|.|+||+||||+++.|++.|..
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999755

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.07  E-value=0.00012  Score=56.70  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHH
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~  129 (247)
                      .+|..++++|+||+|||++|+.+++
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4677899999999999999988744

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.00024  Score=54.81  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=20.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      -++|.||||+|||++|+.||+.+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36778999999999999999984

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00025  Score=56.05  Aligned_cols=27  Identities=26%  Similarity=0.295  Sum_probs=24.4

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .|+++-+.|++|+||||+|+.|++.+-
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            488899999999999999999999863

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00034  Score=54.98  Aligned_cols=23  Identities=22%  Similarity=0.511  Sum_probs=21.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++.+-||||+||+|.|+.||+.+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            67888999999999999999995

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=96.82  E-value=0.0025  Score=52.60  Aligned_cols=104  Identities=15%  Similarity=0.229  Sum_probs=59.4

Q ss_pred             HHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeecccccCCCCChHHHHHHHHHHH
Q psy1694          90 ICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNW  169 (247)
Q Consensus        90 l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~~~l~~~~~~~v~~~~~~l~~~  169 (247)
                      +...+..++.... + +-..+.|+||+++|||+++.+|.+.+ +   .     +..++-+.-.++               
T Consensus        89 f~~~l~~~L~~~~-~-k~n~~~l~G~~~tGKS~f~~~i~~~l-g---~-----~~~~~~~~~~f~---------------  142 (267)
T d1u0ja_          89 AASVFLGWATKKF-G-KRNTIWLFGPATTGKTNIAEAIAHTV-P---F-----YGCVNWTNENFP---------------  142 (267)
T ss_dssp             HHHHHHHHHTTCS-T-TCCEEEEECSTTSSHHHHHHHHHHHS-S---C-----EEECCTTCSSCT---------------
T ss_pred             HHHHHHHHHcCCC-C-ccEEEEEEcCCCCCHHHHHHHHHHHh-c---c-----hhhccccCCCcc---------------
Confidence            4445555554332 2 33478899999999999999998875 4   1     111111110111               


Q ss_pred             HHHHHHh-CCCeEEEEeCCCCCChhhHHHHHhhcccCccc------ccccCCceEEEEEeCC
Q psy1694         170 IISNVTA-CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY------NQISFQNTIFLFLSNS  224 (247)
Q Consensus       170 ~~~~l~~-~~~~vlilDEiek~~~~~~~~Ll~~Le~~~~~------~~~~~~~~ifI~tSN~  224 (247)
                          +.. ....++++||... +....+.++.+++...+.      +.+.+.....++|||.
T Consensus       143 ----l~~l~~k~~~~~~e~~~-~~~~~~~~K~l~gGd~i~v~~K~k~~~~~~~~p~li~s~n  199 (267)
T d1u0ja_         143 ----FNDCVDKMVIWWEEGKM-TAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNT  199 (267)
T ss_dssp             ----TGGGSSCSEEEECSCCE-ETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESS
T ss_pred             ----ccccCCCEEEEEeCCCc-cccHHHHHHHhcCCCceEeecccCCCcEeeCCeEEEEeCC
Confidence                111 2347889999864 455667788887765433      2235555555555553

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.80  E-value=0.017  Score=48.62  Aligned_cols=29  Identities=28%  Similarity=0.520  Sum_probs=24.9

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+...+=++||||+|||++...+.+++..
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~   77 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTA   77 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhh
Confidence            36667899999999999999999988654

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.77  E-value=0.0012  Score=55.25  Aligned_cols=46  Identities=22%  Similarity=0.363  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694          86 AISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus        86 a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .++.+...+..+..+.  .++|+.+-+.|++|+||||+|..|...|..
T Consensus         8 ~~~~~~~~~~~~~~~~--~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~   53 (286)
T d1odfa_           8 TIEFLDKYIPEWFETG--NKCPLFIFFSGPQGSGKSFTSIQIYNHLME   53 (286)
T ss_dssp             HHHHHHHHHHHHHTTT--CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC--CCCCEEEEeECCCCCCHHHHHHHHHHHHHH
Confidence            3444545555554333  457999999999999999999999877644

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.70  E-value=0.00022  Score=55.47  Aligned_cols=29  Identities=17%  Similarity=0.241  Sum_probs=25.9

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ..+|+.+.+.|+.|+||||+++.|++++.
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45899999999999999999999988753

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.66  E-value=0.0027  Score=50.47  Aligned_cols=25  Identities=28%  Similarity=0.363  Sum_probs=22.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+++.||||+|||++|.-++.+...
T Consensus        28 l~li~G~pGsGKT~l~~qia~~~~~   52 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVENACA   52 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            6889999999999999999888655

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.65  E-value=0.0017  Score=49.61  Aligned_cols=49  Identities=20%  Similarity=0.245  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694          84 ELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus        84 ~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +.++..+-+.+.+.+.... .+.+.+++|.|+-|+|||+.+|.+++.+-.
T Consensus        11 e~~t~~lg~~la~~l~~~~-~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          11 EFSMLRFGKKFAEILLKLH-TEKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-CSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhcc-CCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            3445555555554442221 223457899999999999999999999643

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.0091  Score=48.10  Aligned_cols=105  Identities=12%  Similarity=0.151  Sum_probs=53.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCC--------cceeeecccccCCC--CChHHHHHHHHHHHHHHHHHhC-
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS--------RFVHKFNSRIHFPN--ENHVSLYRLQLTNWIISNVTAC-  177 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~--------~~v~~~~~~l~~~~--~~~v~~~~~~l~~~~~~~l~~~-  177 (247)
                      .++++||...|||+..|.++-..+-.+ -|...        +|=.++. .+...+  ......|..++.. +...+..+ 
T Consensus        43 ~~iiTGpN~~GKSt~lk~i~l~~~laq-~G~~VpA~~a~~~~~d~I~~-~~~~~d~~~~~~S~F~~E~~~-~~~il~~~~  119 (234)
T d1wb9a2          43 MLIITGPNMGGKSTYMRQTALIALMAY-IGSYVPAQKVEIGPIDRIFT-RVGAADDLASGRSTFMVEMTE-TANILHNAT  119 (234)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHHT-TTCCBSSSEEEECCCCEEEE-EEC-----------CHHHHHH-HHHHHHHCC
T ss_pred             EEEEeccCchhhHHHHHHHHHHHHHHH-cCCeEecCceecccchhhee-EEccCcccccchhHHHHHHHH-HHHHHHhcc
Confidence            578999999999999999987754311 22211        1111111 111111  1111224333332 33455554 


Q ss_pred             CCeEEEEeCCCCCCh-----hhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         178 DRAIFIFDEVDKFPK-----GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       178 ~~~vlilDEiek~~~-----~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      +++++++||+.+-..     .+..+++..+...        .++.+|+||-.
T Consensus       120 ~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~--------~~~~~i~tTH~  163 (234)
T d1wb9a2         120 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANK--------IKALTLFATHY  163 (234)
T ss_dssp             TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT--------TCCEEEEECSC
T ss_pred             cccEEeecccccCCChhhhhHHHHHhhhhhhcc--------ccceEEEecch
Confidence            458999999988743     3334444444321        34456666644

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.51  E-value=0.014  Score=49.20  Aligned_cols=107  Identities=15%  Similarity=0.199  Sum_probs=60.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceee-ecccccCCCC---------ChHHHHHHHHHHHHHHHHHhCC
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK-FNSRIHFPNE---------NHVSLYRLQLTNWIISNVTACD  178 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~-~~~~l~~~~~---------~~v~~~~~~l~~~~~~~l~~~~  178 (247)
                      ++++.|++|+|||++.+++...+..      ....+.+ +..++..+..         ..+. +    .+.+...+ +..
T Consensus       168 nili~G~tgSGKTT~l~al~~~i~~------~~rivtiEd~~El~l~~~~~~~~~~~~~~~~-~----~~ll~~~l-R~~  235 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFIPK------EERIISIEDTEEIVFKHHKNYTQLFFGGNIT-S----ADCLKSCL-RMR  235 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSCT------TCCEEEEESSCCCCCSSCSSEEEEECBTTBC-H----HHHHHHHT-TSC
T ss_pred             CEEEEeeccccchHHHHHHhhhccc------ccceeeccchhhhhcccccccceeccccchh-H----HHHHHHHh-ccC
Confidence            6899999999999999999766422      1122222 1233332221         1111 2    23343333 445


Q ss_pred             CeEEEEeCCCCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHHHH
Q psy1694         179 RAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRK  238 (247)
Q Consensus       179 ~~vlilDEiek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~~~  238 (247)
                      .+.+++.|+-.  ++..+ +++.+..+.       .-++.=+-+|...+.+.+. .++..
T Consensus       236 pd~iivgEiR~--~ea~~-~l~a~~tGh-------~g~~tT~Ha~s~~~a~~Rl-~~l~~  284 (323)
T d1g6oa_         236 PDRIILGELRS--SEAYD-FYNVLCSGH-------KGTLTTLHAGSSEEAFIRL-ANMSS  284 (323)
T ss_dssp             CSEEEESCCCS--THHHH-HHHHHHTTC-------SCEEEEECCSSHHHHHHHH-HHHHH
T ss_pred             CCcccCCccCc--hhHHH-HHHHHHhcC-------CcEEEEECCCCHHHHHHHH-HHhcc
Confidence            58899999963  45544 566777753       2244444567667777764 34444

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.35  E-value=0.014  Score=46.63  Aligned_cols=104  Identities=12%  Similarity=0.148  Sum_probs=55.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCC--------cceeeecccccCCC--CChHHHHHHHHHHHHHHHHHhC-
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS--------RFVHKFNSRIHFPN--ENHVSLYRLQLTNWIISNVTAC-  177 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~--------~~v~~~~~~l~~~~--~~~v~~~~~~l~~~~~~~l~~~-  177 (247)
                      .++++||...|||+..|.++-..+-.+ -|.-.        +|=.++ ..+..++  ......|..++. ++...+..+ 
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l~~ilAq-~G~~vpA~~~~i~~~d~I~-~~~~~~d~~~~~~StF~~el~-~~~~il~~~~  113 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTALIALLAQ-VGSFVPAEEAHLPLFDGIY-TRIGASDDLAGGKSTFMVEME-EVALILKEAT  113 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHHHHHT-TTCCBSSSEEEECCCSEEE-EECCC------CCSHHHHHHH-HHHHHHHHCC
T ss_pred             EEEEECCCccccchhhhhhHHHHHHHh-ccceeecCceEEeecceEE-EEECCCccccCCccHHHHhHH-HHHHHhccCC
Confidence            578999999999999999877654211 22211        111111 1110011  111123444433 334455554 


Q ss_pred             CCeEEEEeCCCCCCh-----hhHHHHHhhcccCcccccccCCceEEEEEeCC
Q psy1694         178 DRAIFIFDEVDKFPK-----GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  224 (247)
Q Consensus       178 ~~~vlilDEiek~~~-----~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~  224 (247)
                      .++++++||+.+-..     .+...+++.|.+         .++.+++||..
T Consensus       114 ~~sLvliDE~~~gT~~~eg~ala~aile~L~~---------~~~~~i~tTH~  156 (224)
T d1ewqa2         114 ENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---------RRAYTLFATHY  156 (224)
T ss_dssp             TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---------HTCEEEEECCC
T ss_pred             CCcEEeecccccCcchhhhcchHHHHHHHHhh---------cCcceEEeeec
Confidence            569999999988753     344455555544         23455666544

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.29  E-value=0.028  Score=43.92  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=17.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .++...|+|+|||+.+-...-.
T Consensus        44 d~iv~a~TGsGKT~~~~l~~~~   65 (208)
T d1hv8a1          44 NIVAQARTGSGKTASFAIPLIE   65 (208)
T ss_dssp             EEEEECCSSSSHHHHHHHHHHH
T ss_pred             Ceeeechhcccccceeeccccc
Confidence            5788899999999988666444

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.19  E-value=0.031  Score=45.71  Aligned_cols=28  Identities=25%  Similarity=0.428  Sum_probs=23.4

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +|+.-++.|.+|+|||.+|-..+.....
T Consensus       103 ~~m~rLL~GdvGSGKT~Va~~a~~~~~~  130 (264)
T d1gm5a3         103 KPMNRLLQGDVGSGKTVVAQLAILDNYE  130 (264)
T ss_dssp             SCCCCEEECCSSSSHHHHHHHHHHHHHH
T ss_pred             CcceeeeeccccccccHHHHHHHHHHHh
Confidence            5666799999999999999888776555

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.18  E-value=0.0016  Score=50.16  Aligned_cols=25  Identities=28%  Similarity=0.442  Sum_probs=22.1

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .|+.+-++|++|+|||++|+.+.+.
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            5888889999999999999999653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.15  E-value=0.002  Score=48.54  Aligned_cols=25  Identities=16%  Similarity=0.258  Sum_probs=22.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++-+.|++|+||||+++.|+..|-.
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            4678999999999999999998765

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.012  Score=49.84  Aligned_cols=29  Identities=21%  Similarity=0.429  Sum_probs=25.5

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .++..+-++||||+|||++...++.++..
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~   80 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR   80 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            46678999999999999999999988765

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.02  E-value=0.0018  Score=50.32  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=19.6

Q ss_pred             EEEeecCCChHHHHHHHHHHHh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +.|.||+|+||+++++.|++..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            4689999999999999998873

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.98  E-value=0.0022  Score=49.22  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=20.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+.|.||+|+||+++++.+.+.
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5788999999999999999877

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.98  E-value=0.044  Score=44.84  Aligned_cols=74  Identities=12%  Similarity=0.068  Sum_probs=44.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec----------------ccccCCCCChHHHHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN----------------SRIHFPNENHVSLYRLQLTNWIIS  172 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~----------------~~l~~~~~~~v~~~~~~l~~~~~~  172 (247)
                      ..-+.||+|+|||++|-.++.....   .|  ...+.++.                ..+....+...+   + ..+.+..
T Consensus        59 itei~G~~~sGKT~l~l~~~~~aqk---~g--~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E---~-~~~~~~~  129 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVAQAQK---AG--GTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGE---Q-ALEIMEL  129 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH---TT--CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHH---H-HHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHHHHHh---CC--CEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHH---H-HHHHHHH
Confidence            6889999999999999888777544   33  23344432                111111122222   1 2233434


Q ss_pred             HHHhCCCeEEEEeCCCCCC
Q psy1694         173 NVTACDRAIFIFDEVDKFP  191 (247)
Q Consensus       173 ~l~~~~~~vlilDEiek~~  191 (247)
                      .++..+..+||+|=+..+.
T Consensus       130 l~~~~~~~liIiDSi~al~  148 (268)
T d1xp8a1         130 LVRSGAIDVVVVDSVAALT  148 (268)
T ss_dssp             HHTTTCCSEEEEECTTTCC
T ss_pred             HHhcCCCcEEEEecccccc
Confidence            4555667999999997765

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.0019  Score=49.93  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=19.6

Q ss_pred             EEEeecCCChHHHHHHHHHHHh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l  131 (247)
                      ++|.||+|+||+++++.|++..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            4789999999999999998873

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.028  Score=44.36  Aligned_cols=51  Identities=22%  Similarity=0.397  Sum_probs=29.9

Q ss_pred             eEEEEeCCCCCCh-hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHHH
Q psy1694         180 AIFIFDEVDKFPK-GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELR  237 (247)
Q Consensus       180 ~vlilDEiek~~~-~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~~  237 (247)
                      ..+++||+|.|-. +..+.+.+.++.-+       ++.=+++.|-+=++.+.+..-.++
T Consensus       157 ~~lVlDEaD~ll~~~f~~~~~~Il~~~~-------~~~Q~il~SAT~~~~v~~~~~~~l  208 (218)
T d2g9na1         157 KMFVLDEADEMLSRGFKDQIYDIFQKLN-------SNTQVVLLSATMPSDVLEVTKKFM  208 (218)
T ss_dssp             CEEEEESHHHHHHTTCHHHHHHHHHHSC-------TTCEEEEEESCCCHHHHHHHHHHC
T ss_pred             eEEEeeecchhhcCchHHHHHHHHHhCC-------CCCeEEEEEecCCHHHHHHHHHHC
Confidence            8999999998753 23444444443321       223466666666666776654444

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.055  Score=43.35  Aligned_cols=28  Identities=21%  Similarity=0.045  Sum_probs=23.6

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +|...|++|.+|+|||.++-..+.....
T Consensus        75 ~~~~~LL~GdvGsGKT~V~~~a~~~~~~  102 (233)
T d2eyqa3          75 LAMDRLVCGDVGFGKTEVAMRAAFLAVD  102 (233)
T ss_dssp             SCCEEEEECCCCTTTHHHHHHHHHHHHT
T ss_pred             CccCeEEEcCCCCCcHHHHHHHHHHHHH
Confidence            6778899999999999999777766555

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.92  E-value=0.03  Score=48.42  Aligned_cols=25  Identities=20%  Similarity=0.202  Sum_probs=21.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+++.||+|+||||+...+-+.+..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~~~~  184 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQELNS  184 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             eEEEEcCCCCCccHHHHHHhhhhcC
Confidence            4788999999999999999887643

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.017  Score=47.28  Aligned_cols=74  Identities=8%  Similarity=0.079  Sum_probs=44.1

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec----------------ccccCCCCChHHHHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN----------------SRIHFPNENHVSLYRLQLTNWIIS  172 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~----------------~~l~~~~~~~v~~~~~~l~~~~~~  172 (247)
                      +..|.||||+|||++|-.++.....   ++.  ..+.++.                ..+....+..++.    ..+.+..
T Consensus        56 itei~G~~gsGKTtl~l~~~~~~q~---~g~--~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~----~~~~i~~  126 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAAAQR---EGK--TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ----ALEICDA  126 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH---TTC--CEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHH----HHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHHHHc---CCC--EEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHH----HHHHHHH
Confidence            6889999999999999888777544   332  2333332                1111222222221    2233434


Q ss_pred             HHHhCCCeEEEEeCCCCCC
Q psy1694         173 NVTACDRAIFIFDEVDKFP  191 (247)
Q Consensus       173 ~l~~~~~~vlilDEiek~~  191 (247)
                      ..+..+..++|+|=+..+.
T Consensus       127 l~~~~~~~liViDSi~al~  145 (263)
T d1u94a1         127 LARSGAVDVIVVDSVAALT  145 (263)
T ss_dssp             HHHHTCCSEEEEECGGGCC
T ss_pred             HHhcCCCCEEEEECccccc
Confidence            4455667899999987664

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0032  Score=49.80  Aligned_cols=28  Identities=21%  Similarity=0.356  Sum_probs=24.4

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      |+.-+.|.|+.|+||||.++.|++.|..
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~   29 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCA   29 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4556788999999999999999999765

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: DNA helicase UvsW
domain: DNA helicase UvsW
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.70  E-value=0.023  Score=46.82  Aligned_cols=23  Identities=9%  Similarity=0.235  Sum_probs=18.7

Q ss_pred             EEeecCCChHHHHHHHHHHHhhc
Q psy1694         111 SLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       111 ll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++.-|+|+|||.+|-.+++.+..
T Consensus       132 il~~pTGsGKT~i~~~i~~~~~~  154 (282)
T d1rifa_         132 ILNLPTSAGRSLIQALLARYYLE  154 (282)
T ss_dssp             EECCCTTSCHHHHHHHHHHHHHH
T ss_pred             eeEEEcccCccHHHHHHHHHhhh
Confidence            55669999999999888876544

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.084  Score=40.97  Aligned_cols=16  Identities=31%  Similarity=0.262  Sum_probs=13.4

Q ss_pred             EEEEeecCCChHHHHH
Q psy1694         109 AISLHGLPGTGKNYVT  124 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A  124 (247)
                      .+++..|+|+|||+..
T Consensus        42 dvl~~a~TGsGKTlay   57 (206)
T d1veca_          42 DILARAKNGTGKSGAY   57 (206)
T ss_dssp             CEEEECCSSSTTHHHH
T ss_pred             CEEeeccCcccccccc
Confidence            4788999999999654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.55  E-value=0.027  Score=43.60  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=18.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+++.|+||+|||++|.-++.+
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~~   49 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLYN   49 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            6889999999999999665544

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.48  E-value=0.058  Score=42.24  Aligned_cols=17  Identities=24%  Similarity=0.270  Sum_probs=14.2

Q ss_pred             EEEEeecCCChHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTD  125 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~  125 (247)
                      .++...|+|+|||++.-
T Consensus        49 dvl~~a~TGsGKT~a~~   65 (212)
T d1qdea_          49 DVLAQAQSGTGKTGTFS   65 (212)
T ss_dssp             CEEEECCTTSSHHHHHH
T ss_pred             CEEeecccccchhhhhH
Confidence            47889999999998654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.40  E-value=0.0049  Score=48.62  Aligned_cols=24  Identities=21%  Similarity=0.350  Sum_probs=21.6

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +++++.|++|+||||+.+.+.+++
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Confidence            478899999999999999998875

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0048  Score=46.97  Aligned_cols=25  Identities=16%  Similarity=0.135  Sum_probs=21.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++++.||||+|||++|-.++.+...
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~~   49 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQL   49 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            7899999999999999998877543

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0051  Score=48.83  Aligned_cols=27  Identities=15%  Similarity=0.245  Sum_probs=23.8

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      |.-+.|.|+.|+||||+++.|++++..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            557889999999999999999999644

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.29  E-value=0.0056  Score=48.26  Aligned_cols=23  Identities=13%  Similarity=0.251  Sum_probs=20.2

Q ss_pred             eEEEEeecCCChHHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ..+++.||+|+||+++.+.|.+.
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            35788999999999999998776

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.27  E-value=0.016  Score=42.12  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=19.5

Q ss_pred             EEEeecCCChHHHHHHHHHHHhh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +++.|+||+|||++...+...-+
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~~   25 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGEI   25 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC
Confidence            57899999999999999866533

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.007  Score=47.24  Aligned_cols=25  Identities=28%  Similarity=0.541  Sum_probs=22.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      -+.|.|+.|+||||.++.|++.|-.
T Consensus         4 fIviEG~dGsGKsT~~~~L~~~L~~   28 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVETLEQ   28 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4778999999999999999999765

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.06  E-value=0.0077  Score=46.56  Aligned_cols=25  Identities=20%  Similarity=0.429  Sum_probs=22.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      -+.|.|+.|+||||+++.|++.+-.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~   26 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4678999999999999999998755

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.03  E-value=0.0081  Score=47.43  Aligned_cols=28  Identities=21%  Similarity=0.329  Sum_probs=24.3

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      |+.-+.|.|+.|+||||.++.|++.|-.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            5667889999999999999999998643

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.96  E-value=0.0088  Score=47.31  Aligned_cols=24  Identities=17%  Similarity=0.263  Sum_probs=21.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      ++++.||||+|||++|--++.+..
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhh
Confidence            689999999999999988877743

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0088  Score=47.18  Aligned_cols=25  Identities=16%  Similarity=0.106  Sum_probs=21.5

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .++++.||||+|||++|..++.+..
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~~~   62 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVTAQ   62 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3789999999999999998887643

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.92  E-value=0.0063  Score=47.68  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=19.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      ++++.||||+|||+++--++.+
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7899999999999999877554

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=94.90  E-value=0.042  Score=42.32  Aligned_cols=19  Identities=16%  Similarity=0.076  Sum_probs=15.4

Q ss_pred             EEEEeecCCChHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFI  127 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~l  127 (247)
                      .+++.-|||+|||.++...
T Consensus        42 ~vlv~apTGsGKT~~~~~~   60 (206)
T d1oywa2          42 DCLVVMPTGGGKSLCYQIP   60 (206)
T ss_dssp             CEEEECSCHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCCcchhhhh
Confidence            4677889999999987655

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.89  E-value=0.082  Score=40.68  Aligned_cols=16  Identities=25%  Similarity=0.287  Sum_probs=13.5

Q ss_pred             EEEEeecCCChHHHHH
Q psy1694         109 AISLHGLPGTGKNYVT  124 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A  124 (247)
                      .+++..|+|+|||+..
T Consensus        40 dvii~a~TGSGKTlay   55 (209)
T d1q0ua_          40 SMVGQSQTGTGKTHAY   55 (209)
T ss_dssp             CEEEECCSSHHHHHHH
T ss_pred             CeEeecccccccceee
Confidence            4788999999999854

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.88  E-value=0.0071  Score=47.33  Aligned_cols=25  Identities=16%  Similarity=0.290  Sum_probs=22.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++++.|+||+|||++|.-+|.++..
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~~~   60 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNLQN   60 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            7899999999999999999888654

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.059  Score=41.94  Aligned_cols=17  Identities=24%  Similarity=0.229  Sum_probs=13.8

Q ss_pred             EEEEeecCCChHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTD  125 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~  125 (247)
                      .+++..|+|+|||+..-
T Consensus        40 dvl~~A~TGsGKTla~~   56 (207)
T d1t6na_          40 DVLCQAKSGMGKTAVFV   56 (207)
T ss_dssp             CEEEECCTTSCHHHHHH
T ss_pred             CeEEEeccccccccccc
Confidence            47889999999986543

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.0078  Score=46.21  Aligned_cols=21  Identities=19%  Similarity=0.523  Sum_probs=18.5

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +.|.||+|+||+++.+.|.+.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            577999999999999988765

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.71  E-value=0.006  Score=50.85  Aligned_cols=27  Identities=22%  Similarity=0.252  Sum_probs=20.0

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +-++-++|++|+|||++++.+.+.+-.
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~i~~~   30 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQIFRR   30 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            337889999999999999999888543

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=94.55  E-value=0.012  Score=48.04  Aligned_cols=16  Identities=25%  Similarity=0.254  Sum_probs=13.4

Q ss_pred             eEEEEeecCCChHHHH
Q psy1694         108 LAISLHGLPGTGKNYV  123 (247)
Q Consensus       108 l~lll~G~~GtGKt~~  123 (247)
                      -..++.+|||+|||+.
T Consensus        10 ~~~lv~~~TGsGKT~~   25 (305)
T d2bmfa2          10 RLTIMDLHPGAGKTKR   25 (305)
T ss_dssp             CEEEECCCTTSSTTTT
T ss_pred             CcEEEEECCCCCHHHH
Confidence            3678899999999963

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.44  E-value=0.0098  Score=47.88  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=20.4

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHH
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .-.+.+.||+|+||||+.++++..
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          31 GEFVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCcchhhHhccCC
Confidence            336889999999999999999665

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=94.39  E-value=0.08  Score=38.55  Aligned_cols=20  Identities=20%  Similarity=0.481  Sum_probs=17.6

Q ss_pred             EEEEeecCCChHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIV  128 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la  128 (247)
                      -+.+.|+||+|||++.+.+.
T Consensus         3 kI~lvG~~nvGKSsLin~l~   22 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALA   22 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            47899999999999998884

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.013  Score=47.25  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=20.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++++-.+
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            67889999999999999997653

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=94.34  E-value=0.011  Score=47.85  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=20.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||++++|+..+
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57889999999999999997653

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=94.26  E-value=0.012  Score=47.68  Aligned_cols=23  Identities=17%  Similarity=0.226  Sum_probs=20.0

Q ss_pred             eEEEEeecCCChHHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~  130 (247)
                      -.+.+.||+|+||||++++|+-.
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHcCC
Confidence            36788999999999999999654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.18  E-value=0.018  Score=42.15  Aligned_cols=25  Identities=24%  Similarity=0.397  Sum_probs=20.7

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~  130 (247)
                      |.+-++|.|+||+|||++.+.+...
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCC
Confidence            4456899999999999999988544

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.15  E-value=0.17  Score=38.90  Aligned_cols=51  Identities=18%  Similarity=0.253  Sum_probs=27.4

Q ss_pred             eEEEEeCCCCCCh-hhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHHHHHHHH
Q psy1694         180 AIFIFDEVDKFPK-GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELR  237 (247)
Q Consensus       180 ~vlilDEiek~~~-~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~~~~~~~  237 (247)
                      ..+++||+|+|-. +....+...++.-+       ++.-+++.|-+-++.+.+.+..++
T Consensus       145 ~~lV~DEaD~l~~~~f~~~v~~I~~~l~-------~~~Q~il~SATl~~~v~~~~~~~l  196 (206)
T d1s2ma1         145 SLFIMDEADKMLSRDFKTIIEQILSFLP-------PTHQSLLFSATFPLTVKEFMVKHL  196 (206)
T ss_dssp             CEEEEESHHHHSSHHHHHHHHHHHTTSC-------SSCEEEEEESCCCHHHHHHHHHHC
T ss_pred             eEEEeechhhhhhhhhHHHHHHHHHhCC-------CCCEEEEEEEeCCHHHHHHHHHHC
Confidence            6799999999864 34444444443311       122344444334555665554443

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=94.15  E-value=0.013  Score=47.11  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+-.+
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            68899999999999999997764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.0057  Score=48.28  Aligned_cols=24  Identities=21%  Similarity=0.243  Sum_probs=21.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      -+.+.|+.|+||||+++.|++++.
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            478899999999999999999863

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.99  E-value=0.12  Score=42.17  Aligned_cols=77  Identities=13%  Similarity=0.052  Sum_probs=43.8

Q ss_pred             CeEEEEeecCCChHHHHHHHHHHHhhccccCCCCCcceeeec----------------ccccCCCCChHHHHHHHHHHHH
Q psy1694         107 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN----------------SRIHFPNENHVSLYRLQLTNWI  170 (247)
Q Consensus       107 pl~lll~G~~GtGKt~~A~~la~~l~~~~~~g~~~~~v~~~~----------------~~l~~~~~~~v~~~~~~l~~~~  170 (247)
                      .....|.||+|+|||++|-.++.....   .+  ...+.++.                ..+....+..++    +..+.+
T Consensus        60 g~i~e~~G~~~~GKT~l~l~~~~~~q~---~g--~~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~~~~E----~~~~~~  130 (269)
T d1mo6a1          60 GRVIEIYGPESSGKTTVALHAVANAQA---AG--GVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGE----QALEIA  130 (269)
T ss_dssp             SSEEEEECSSSSSHHHHHHHHHHHHHH---TT--CEEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHH----HHHHHH
T ss_pred             ceeEEEecCCCcHHHHHHHHHHHHHhc---CC--CEEEEEECCccCCHHHHHHhCCCHHHeEEecCCCHH----HHHHHH
Confidence            336889999999999999777665433   32  22333332                111111222222    122233


Q ss_pred             HHHHHhCCCeEEEEeCCCCCCh
Q psy1694         171 ISNVTACDRAIFIFDEVDKFPK  192 (247)
Q Consensus       171 ~~~l~~~~~~vlilDEiek~~~  192 (247)
                      ...+...+..+||+|=+..+.+
T Consensus       131 ~~l~~~~~~~liIiDSi~al~~  152 (269)
T d1mo6a1         131 DMLIRSGALDIVVIDSVAALVP  152 (269)
T ss_dssp             HHHHHTTCEEEEEEECSTTCCC
T ss_pred             HHHHhcCCCCEEEEeccccccc
Confidence            3334455679999999977764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.97  E-value=0.025  Score=42.02  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=19.9

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~  129 (247)
                      |..=++|.|++|+|||++...+..
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            555588999999999999988843

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.17  Score=39.83  Aligned_cols=16  Identities=25%  Similarity=0.318  Sum_probs=13.2

Q ss_pred             EEEEeecCCChHHHHH
Q psy1694         109 AISLHGLPGTGKNYVT  124 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A  124 (247)
                      .++...|+|+|||..-
T Consensus        56 dvi~~a~TGSGKTlay   71 (222)
T d2j0sa1          56 DVIAQSQSGTGKTATF   71 (222)
T ss_dssp             CEEEECCTTSSHHHHH
T ss_pred             CeEEEcCcchhhhhhh
Confidence            5788999999999644

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.91  E-value=0.015  Score=47.01  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=19.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.|.||+|+||||+.++|+..+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            45578999999999999997764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.056  Score=39.96  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=19.1

Q ss_pred             EEEeecCCChHHHHHHHHHHHhh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +++.|++|+|||++...+...-+
T Consensus         6 i~viG~~~vGKTsli~~l~~~~~   28 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQNHF   28 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHHhCCC
Confidence            68889999999999988865433

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.85  E-value=0.02  Score=44.06  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=18.5

Q ss_pred             EEEEeecCCChHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~  129 (247)
                      .++|.|++|+|||++|-.+.+
T Consensus        16 gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            689999999999999987744

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.83  E-value=0.018  Score=46.45  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||+.++|+..+
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            67889999999999999997653

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.78  E-value=0.25  Score=36.89  Aligned_cols=50  Identities=12%  Similarity=0.272  Sum_probs=32.6

Q ss_pred             HHHHhCCCeEEEEeCC------CCCChhhHHHHHhhcccCcccccccCCceEEEEEeCCChHHHHH
Q psy1694         172 SNVTACDRAIFIFDEV------DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN  231 (247)
Q Consensus       172 ~~l~~~~~~vlilDEi------ek~~~~~~~~Ll~~Le~~~~~~~~~~~~~ifI~tSN~g~~~i~~  231 (247)
                      ..+....+++|||||+      +-++.   +.++.+|+.++       .+.-+|+|-+..++++-+
T Consensus        88 ~~~~~~~~dllILDEi~~Ai~~gli~~---~~v~~ll~~rp-------~~~evVlTGr~~p~~L~e  143 (157)
T d1g5ta_          88 RMLADPLLDMVVLDELTYMVAYDYLPL---EEVISALNARP-------GHQTVIITGRGCHRDILD  143 (157)
T ss_dssp             HHTTCTTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSC-------TTCEEEEECSSCCHHHHH
T ss_pred             HHhhcCccCEEeHHHHHHHHHcCCCCH---HHHHHHHHhCC-------CCCEEEEECCCCCHHHHH
Confidence            3444556799999999      44454   34455556554       566789997776666543

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.78  E-value=0.013  Score=47.41  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=20.8

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHh
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      -.+.+.||+|+||||+.++|+..+
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCc
Confidence            368899999999999999997653

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.77  E-value=0.012  Score=46.09  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=20.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||.|+||||+.++|+..+
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            57889999999999999997764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.75  E-value=0.022  Score=42.52  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=20.8

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHH
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFI  127 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~l  127 (247)
                      +++.+-+++.|++|+|||++.+.+
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l   36 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQL   36 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHH
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHH
Confidence            456667999999999999999887

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.72  E-value=0.018  Score=46.83  Aligned_cols=29  Identities=7%  Similarity=0.153  Sum_probs=23.7

Q ss_pred             CCCeEEEEeCCCCCChhhHHHHHhhcccC
Q psy1694         177 CDRAIFIFDEVDKFPKGLLDVIIPFIDHH  205 (247)
Q Consensus       177 ~~~~vlilDEiek~~~~~~~~Ll~~Le~~  205 (247)
                      ..+.++++||++.+++.....+......+
T Consensus       205 ~~~~~i~vDE~QD~~~~~~~~l~~~~~~~  233 (306)
T d1uaaa1         205 NKIRYLLVDEYQDTNTSQYELVKLLVGSR  233 (306)
T ss_dssp             TTCSEEEESCGGGCBHHHHHHHHHHHTTT
T ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhcccCC
Confidence            35789999999999998888877776553

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.71  E-value=0.019  Score=44.24  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=18.4

Q ss_pred             EEEEeecCCChHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~  129 (247)
                      .++|.|++|+|||++|-.+.+
T Consensus        17 gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999977743

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.69  E-value=0.33  Score=37.87  Aligned_cols=53  Identities=15%  Similarity=0.093  Sum_probs=31.0

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694          71 VLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus        71 ~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+++-+ ++-+|+.-..+.  .++...+.+.       .+++.+|||+|||+++-..+..+..
T Consensus        32 ~~~~~~-~~~~~~p~~~Q~--~~i~~~l~g~-------~~~i~apTGsGKT~~~~~~~~~~~~   84 (237)
T d1gkub1          32 EFVEFF-RKCVGEPRAIQK--MWAKRILRKE-------SFAATAPTGVGKTSFGLAMSLFLAL   84 (237)
T ss_dssp             HHHHHH-HTTTCSCCHHHH--HHHHHHHTTC-------CEECCCCBTSCSHHHHHHHHHHHHT
T ss_pred             HHHHHH-HhccCCCCHHHH--HHHHHHHCCC-------CEEEEecCCChHHHHHHHHHHHHHH
Confidence            344433 335665533332  3344444443       4677899999999988776655444

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=93.61  E-value=0.018  Score=44.81  Aligned_cols=21  Identities=24%  Similarity=0.507  Sum_probs=18.2

Q ss_pred             EEEEeecCCChHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~  129 (247)
                      .+-++|++|+|||++|+.+.+
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            466899999999999998854

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.61  E-value=0.02  Score=46.51  Aligned_cols=22  Identities=27%  Similarity=0.542  Sum_probs=19.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+.+.||+|+||||++++|...
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            6889999999999999999665

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.56  E-value=0.031  Score=45.16  Aligned_cols=29  Identities=14%  Similarity=0.141  Sum_probs=25.5

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +.|..+++.|.-|+|||++|-.+|..+..
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~   34 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAE   34 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHH
Confidence            35668889999999999999999999765

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=93.55  E-value=0.025  Score=44.12  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=19.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+-++|++|+|||++|+.+.+.
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHC
Confidence            5678999999999999998654

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.54  E-value=0.087  Score=42.95  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=16.7

Q ss_pred             EEEeecCCChHHHHH-HHHHHHhh
Q psy1694         110 ISLHGLPGTGKNYVT-DFIVSSIF  132 (247)
Q Consensus       110 lll~G~~GtGKt~~A-~~la~~l~  132 (247)
                      +++.|+||||||+++ ..+++.+.
T Consensus        27 ~lV~g~aGSGKTt~l~~ri~~ll~   50 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHRIAYLMA   50 (318)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEecCCccHHHHHHHHHHHHHH
Confidence            578899999999876 34444443

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.54  E-value=0.021  Score=41.39  Aligned_cols=21  Identities=19%  Similarity=0.400  Sum_probs=18.2

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|+||+|||++...+...
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            578999999999999988553

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.46  E-value=0.054  Score=43.70  Aligned_cols=23  Identities=30%  Similarity=0.489  Sum_probs=20.5

Q ss_pred             CCeEEEEeecCCChHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIV  128 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la  128 (247)
                      .++.+++.|.||+|||++...|.
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~il   53 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSII   53 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCcHHHHHHHHh
Confidence            56789999999999999999884

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.43  E-value=0.025  Score=45.42  Aligned_cols=25  Identities=20%  Similarity=0.182  Sum_probs=21.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ..++.|+||+|||+++-.+|.++..
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~~ia~   55 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAAQIAG   55 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHc
Confidence            5778999999999999999887643

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.42  E-value=0.026  Score=43.13  Aligned_cols=22  Identities=18%  Similarity=0.297  Sum_probs=18.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .++|.|++|.|||++|-.+.+.
T Consensus        17 gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHc
Confidence            6899999999999999777443

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.38  E-value=0.034  Score=44.44  Aligned_cols=19  Identities=32%  Similarity=0.557  Sum_probs=17.2

Q ss_pred             EEEEeecCCChHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFI  127 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~l  127 (247)
                      ...|.|+||+|||++..+|
T Consensus        97 t~~~~G~SGVGKSTLiN~L  115 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAI  115 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHhh
Confidence            4688999999999999988

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.25  E-value=0.025  Score=45.96  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+.+.||+|+||||++++|...
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            5788999999999999999665

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.23  E-value=0.028  Score=44.42  Aligned_cols=22  Identities=41%  Similarity=0.655  Sum_probs=19.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+-|+|+.|+||||+|+.+++.
T Consensus         3 iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4678999999999999999876

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.17  E-value=0.022  Score=46.42  Aligned_cols=23  Identities=30%  Similarity=0.281  Sum_probs=20.1

Q ss_pred             eEEEEeecCCChHHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~  130 (247)
                      -.+-+.||+|+|||+++++|+-.
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcC
Confidence            36889999999999999999654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=93.07  E-value=0.028  Score=45.33  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=20.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||++++|+..+
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            57889999999999999997653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=93.06  E-value=0.029  Score=41.40  Aligned_cols=21  Identities=19%  Similarity=0.295  Sum_probs=18.3

Q ss_pred             EEEEeecCCChHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~  129 (247)
                      -+++.|++|+|||++.+.+..
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            478999999999999998844

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.04  E-value=0.03  Score=46.21  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=20.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+|||++.++|+..+
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            57889999999999999997654

>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Helicase of the SNF2/Rad54 hamily
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.01  E-value=0.21  Score=38.97  Aligned_cols=25  Identities=32%  Similarity=0.228  Sum_probs=20.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ..+|.=++|+|||..|-+++.++..
T Consensus        33 g~iLaDe~GlGKT~~~i~~~~~~~~   57 (230)
T d1z63a1          33 GICLADDMGLGKTLQTIAVFSDAKK   57 (230)
T ss_dssp             CEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCChHHHHHHhhhhhhh
Confidence            4577779999999999888877665

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=93.01  E-value=0.027  Score=45.44  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.+.||+|+||||++++|...+
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            57899999999999999997653

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.81  E-value=0.03  Score=41.95  Aligned_cols=21  Identities=19%  Similarity=0.210  Sum_probs=18.0

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|++|+|||++...+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            678999999999999987543

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.72  E-value=0.032  Score=41.32  Aligned_cols=22  Identities=14%  Similarity=0.164  Sum_probs=18.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      =+++.|++|+|||++...+.+.
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3788999999999999887543

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.034  Score=41.25  Aligned_cols=21  Identities=19%  Similarity=0.235  Sum_probs=18.1

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|++|+|||++.+.+...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999888554

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=92.50  E-value=0.043  Score=40.71  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=19.3

Q ss_pred             eEEEEeecCCChHHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .-+++.|.+|+|||++...+...
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35889999999999999988543

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.49  E-value=0.035  Score=41.33  Aligned_cols=21  Identities=19%  Similarity=0.110  Sum_probs=18.7

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|++|+|||++...+...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            688999999999999988654

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.49  E-value=0.062  Score=40.86  Aligned_cols=23  Identities=17%  Similarity=0.160  Sum_probs=18.5

Q ss_pred             EEEeecCCChHHHHHHHHHHHhh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .++.+|+|+|||.++-.++....
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~~   48 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYRL   48 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHH
Confidence            47889999999998887766543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.032  Score=42.18  Aligned_cols=20  Identities=20%  Similarity=0.139  Sum_probs=17.4

Q ss_pred             EEEeecCCChHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~  129 (247)
                      +++.|++|+|||++++.+.+
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            67899999999999988743

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.038  Score=40.95  Aligned_cols=21  Identities=29%  Similarity=0.400  Sum_probs=18.3

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|++|+|||++...+...
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            688999999999999888654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=92.25  E-value=0.046  Score=41.56  Aligned_cols=20  Identities=25%  Similarity=0.453  Sum_probs=18.1

Q ss_pred             EEEEeecCCChHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIV  128 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la  128 (247)
                      .+.+.|+||+|||++.+.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHhc
Confidence            47889999999999999995

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.21  E-value=0.042  Score=40.94  Aligned_cols=23  Identities=30%  Similarity=0.505  Sum_probs=19.4

Q ss_pred             EEEeecCCChHHHHHHHHHHHhh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +++.|++|+|||++.+.+.+.-+
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~~f   30 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQGLF   30 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCC
Confidence            68899999999999999866433

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.18  E-value=0.056  Score=40.38  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=18.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      =+++.|++|+|||++.+.+...
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999887554

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=92.10  E-value=0.033  Score=44.81  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=20.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+-|.||+|+||||+.++|+-.+
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            67889999999999999996653

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.09  E-value=0.042  Score=40.76  Aligned_cols=21  Identities=19%  Similarity=0.126  Sum_probs=18.3

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|.+|+|||++.+.+...
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999988654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=92.06  E-value=0.041  Score=40.93  Aligned_cols=21  Identities=24%  Similarity=0.452  Sum_probs=18.4

Q ss_pred             EEEEeecCCChHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~  129 (247)
                      .+.+.|+||+|||++.+.|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478899999999999998853

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=92.05  E-value=0.054  Score=41.41  Aligned_cols=24  Identities=13%  Similarity=0.131  Sum_probs=21.4

Q ss_pred             EEEeec-CCChHHHHHHHHHHHhhc
Q psy1694         110 ISLHGL-PGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       110 lll~G~-~GtGKt~~A~~la~~l~~  133 (247)
                      ++++|- +|+|||+++-.||..+..
T Consensus         4 ~~i~gt~~GVGKTtvs~~La~aLa~   28 (224)
T d1byia_           4 YFVTGTDTEVGKTVASCALLQAAKA   28 (224)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHH
Confidence            678898 599999999999999876

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=92.01  E-value=0.044  Score=40.49  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=18.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      -++|.|++|+|||++...+...
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4678999999999999988554

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.01  E-value=0.044  Score=40.76  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=19.1

Q ss_pred             EEEeecCCChHHHHHHHHHHHhh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +++.|++|+|||++...+...-+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~~f   31 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKGQF   31 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCC
Confidence            68899999999999998865433

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=91.97  E-value=0.029  Score=47.46  Aligned_cols=27  Identities=26%  Similarity=0.348  Sum_probs=23.0

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHHHhh
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +++-+.|.|+-|+|||++++.|++.+.
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHhc
Confidence            344588999999999999999998853

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.95  E-value=0.042  Score=41.65  Aligned_cols=29  Identities=14%  Similarity=0.102  Sum_probs=21.7

Q ss_pred             CCCCeE-EEEeecCCChHHHHHHHHHHHhh
Q psy1694         104 NTKALA-ISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       104 ~~kpl~-lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      |.+++. +++.|++|+|||++.+.+.+.-+
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f   34 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAF   34 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSC
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCC
Confidence            334443 88999999999999988865433

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.88  E-value=0.041  Score=41.12  Aligned_cols=21  Identities=19%  Similarity=0.262  Sum_probs=18.3

Q ss_pred             EEEEeecCCChHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~  129 (247)
                      .+.|.|+||+|||++..+|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478899999999999999843

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.84  E-value=0.046  Score=40.90  Aligned_cols=21  Identities=24%  Similarity=0.355  Sum_probs=18.1

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|++|+|||++...+...
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            688999999999999987543

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=91.82  E-value=0.057  Score=40.18  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=19.5

Q ss_pred             CeE-EEEeecCCChHHHHHHHHHHH
Q psy1694         107 ALA-ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       107 pl~-lll~G~~GtGKt~~A~~la~~  130 (247)
                      |+- +++.|++|+|||++.+.+...
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhC
Confidence            444 788999999999999988543

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.79  E-value=0.05  Score=40.49  Aligned_cols=21  Identities=29%  Similarity=0.346  Sum_probs=18.2

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|++|+|||++.+.+...
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            788999999999999888553

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=91.76  E-value=0.055  Score=43.48  Aligned_cols=23  Identities=17%  Similarity=0.105  Sum_probs=20.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+++.|+||+|||+++..++.++
T Consensus        37 l~vi~G~~G~GKT~~~~~la~~~   59 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQALQW   59 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhh
Confidence            57899999999999999998764

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.74  E-value=0.052  Score=41.37  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=18.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .++|.|+||+|||++...+...
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=91.74  E-value=0.044  Score=40.92  Aligned_cols=24  Identities=25%  Similarity=0.311  Sum_probs=19.9

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~  129 (247)
                      |.+-+++.|++|+|||++.+.+..
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc
Confidence            445688999999999999998843

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.72  E-value=0.052  Score=39.97  Aligned_cols=21  Identities=14%  Similarity=0.216  Sum_probs=18.1

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|++|+|||++.+.+...
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            577899999999999998654

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.66  E-value=0.054  Score=41.62  Aligned_cols=18  Identities=17%  Similarity=0.298  Sum_probs=15.1

Q ss_pred             EEEEeecCCChHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDF  126 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~  126 (247)
                      .+++.+|+|+|||++|..
T Consensus        42 ~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          42 NLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             CEEEECSSHHHHHHHHHH
T ss_pred             CEEEEcCCCCchhHHHHH
Confidence            468899999999998743

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.56  E-value=0.056  Score=41.49  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=19.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+++.|++|+|||++...+...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999888553

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.54  E-value=0.055  Score=40.29  Aligned_cols=21  Identities=24%  Similarity=0.389  Sum_probs=18.2

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|.+|+|||++...+...
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999888543

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.45  E-value=0.055  Score=39.79  Aligned_cols=21  Identities=24%  Similarity=0.253  Sum_probs=18.4

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|++|+|||++...+...
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            688999999999999988554

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.42  E-value=0.056  Score=40.19  Aligned_cols=22  Identities=18%  Similarity=0.366  Sum_probs=18.5

Q ss_pred             EEEeecCCChHHHHHHHHHHHh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +++.|++|+|||.+.+.+...-
T Consensus         5 i~lvG~~~vGKTsli~r~~~~~   26 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTKR   26 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            6789999999999998886543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.39  E-value=0.058  Score=40.34  Aligned_cols=24  Identities=17%  Similarity=0.162  Sum_probs=19.1

Q ss_pred             EEEeecCCChHHHHHHHHHHHhhc
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +++.|++|+|||++...+.+.-+.
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~~f~   28 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKDQFP   28 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCC
Confidence            467899999999999888665433

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.38  E-value=0.049  Score=40.40  Aligned_cols=20  Identities=25%  Similarity=0.404  Sum_probs=17.1

Q ss_pred             EEEeecCCChHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~  129 (247)
                      +++.|++|+|||++...+..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            57889999999999887744

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.29  E-value=0.057  Score=40.64  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=18.1

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|.+|||||++...+...
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999888543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.25  E-value=0.034  Score=45.20  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=19.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+.+.||+|+||||+++.|...
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHhc
Confidence            5789999999999999999654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.22  E-value=0.06  Score=40.01  Aligned_cols=20  Identities=25%  Similarity=0.371  Sum_probs=17.6

Q ss_pred             EEEeecCCChHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~  129 (247)
                      +++.|++|+|||++...+..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            67899999999999988754

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.18  E-value=0.048  Score=44.19  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=19.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+-|.||+|+|||++.++|+-.
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHCC
Confidence            6788999999999999999665

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.14  E-value=0.054  Score=40.27  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=17.6

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|++|+|||++.+.+...
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            578899999999999887543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.09  E-value=0.066  Score=39.51  Aligned_cols=21  Identities=33%  Similarity=0.366  Sum_probs=18.3

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|++|+|||++.+.+...
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999988554

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.07  E-value=0.063  Score=39.71  Aligned_cols=21  Identities=29%  Similarity=0.360  Sum_probs=18.3

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|.+|+|||++.+.+.+.
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999988554

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=90.99  E-value=0.061  Score=40.35  Aligned_cols=23  Identities=35%  Similarity=0.465  Sum_probs=19.4

Q ss_pred             CCeEEEEeecCCChHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIV  128 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la  128 (247)
                      +-+-+++.|++|+|||++.+.+.
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHh
Confidence            44558899999999999998873

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=90.88  E-value=0.084  Score=39.49  Aligned_cols=25  Identities=28%  Similarity=0.537  Sum_probs=20.8

Q ss_pred             CCCeEEEEeecCCChHHHHHHHHHH
Q psy1694         105 TKALAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       105 ~kpl~lll~G~~GtGKt~~A~~la~  129 (247)
                      +.++-+.+.|.+|+|||++..++..
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHC
Confidence            3456788999999999999988843

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.88  E-value=0.068  Score=39.53  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=19.2

Q ss_pred             EEEeecCCChHHHHHHHHHHHhh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +++.|.+|+|||++.+.+...-|
T Consensus         6 ivvvG~~~vGKTsli~r~~~~~f   28 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQGIF   28 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHHcCCC
Confidence            68899999999999998865433

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=90.87  E-value=0.061  Score=43.13  Aligned_cols=24  Identities=29%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+-+.||.|+||||+.++|+..+.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            577899999999999999976643

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.82  E-value=0.069  Score=39.61  Aligned_cols=21  Identities=24%  Similarity=0.283  Sum_probs=18.0

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|++|+|||++.+.+...
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            688999999999999887543

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.75  E-value=0.078  Score=39.12  Aligned_cols=22  Identities=27%  Similarity=0.356  Sum_probs=18.5

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      =+++.|++|+|||++...+...
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678899999999999988554

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.68  E-value=0.063  Score=40.10  Aligned_cols=19  Identities=26%  Similarity=0.520  Sum_probs=17.0

Q ss_pred             EEEeecCCChHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIV  128 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la  128 (247)
                      +++.|++|+|||++.+.+.
T Consensus         6 v~lvG~~~vGKTsLi~~~~   24 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFA   24 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            6789999999999998874

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=90.61  E-value=0.023  Score=42.41  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             EEEeecCCChHHHHHHHHHHHhhc
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+|+||.|+|||++..+|.-.+++
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L~g   50 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTALIP   50 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcC
Confidence            467899999999999999777655

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.56  E-value=0.077  Score=39.94  Aligned_cols=23  Identities=22%  Similarity=0.306  Sum_probs=19.1

Q ss_pred             EEEeecCCChHHHHHHHHHHHhh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +++.|++|+|||++.+.+.+.-+
T Consensus         5 ivliG~~~vGKTsli~r~~~~~f   27 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKDCF   27 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCC
Confidence            57899999999999988866533

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.53  E-value=0.1  Score=37.41  Aligned_cols=30  Identities=10%  Similarity=0.192  Sum_probs=25.8

Q ss_pred             CCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         104 NTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       104 ~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +++..+++|.|-+|.||+++|+++-..+..
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~~l~q   32 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLSTFLQ   32 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            356788999999999999999999777654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.44  E-value=0.078  Score=39.47  Aligned_cols=20  Identities=30%  Similarity=0.404  Sum_probs=17.7

Q ss_pred             EEEeecCCChHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~  129 (247)
                      +++.|++|+|||++...+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999987754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=90.41  E-value=0.057  Score=43.06  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=19.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .+-+.||+|+||||+.++++..
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6788999999999999999763

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.22  E-value=0.085  Score=40.15  Aligned_cols=21  Identities=24%  Similarity=0.281  Sum_probs=17.9

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|++|+|||++...+...
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            678899999999999887543

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.17  E-value=0.14  Score=40.95  Aligned_cols=26  Identities=27%  Similarity=0.272  Sum_probs=23.2

Q ss_pred             eEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .++++.|.-|+|||++|-.||..+..
T Consensus        21 ~iii~sGKGGVGKTT~a~nLA~~lA~   46 (279)
T d1ihua2          21 GLIMLMGKGGVGKTTMAAAIAVRLAD   46 (279)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            37888999999999999999998766

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.15  E-value=0.075  Score=39.34  Aligned_cols=21  Identities=29%  Similarity=0.330  Sum_probs=17.7

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|++|+|||++...+...
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999998877543

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.14  E-value=0.11  Score=38.49  Aligned_cols=21  Identities=24%  Similarity=0.272  Sum_probs=18.1

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|++|+|||++...+...
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999888653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.13  E-value=0.085  Score=39.40  Aligned_cols=21  Identities=24%  Similarity=0.278  Sum_probs=18.6

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|++|+|||++.+.+...
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=90.04  E-value=0.048  Score=43.67  Aligned_cols=20  Identities=25%  Similarity=0.408  Sum_probs=17.4

Q ss_pred             EEEEeecCCChHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIV  128 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la  128 (247)
                      ..+|.|+||+|||++..+|.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~  118 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAIS  118 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHC
T ss_pred             eEEEECCCCccHHHHHHhhc
Confidence            45788999999999998884

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.98  E-value=0.091  Score=39.79  Aligned_cols=23  Identities=17%  Similarity=0.140  Sum_probs=18.6

Q ss_pred             EEEeecCCChHHHHHHHHHHHhh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +++.|++|+|||++...+.+.-+
T Consensus         6 vvllG~~~vGKTSli~r~~~~~f   28 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTNKF   28 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCC
Confidence            67889999999999887755433

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=89.94  E-value=0.076  Score=44.72  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=21.7

Q ss_pred             EEEeecCCChHHHHHHHHHHHhhc
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +.|.|+-|+||||+++.+++.+..
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhh
Confidence            789999999999999999998644

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.83  E-value=0.093  Score=39.41  Aligned_cols=22  Identities=14%  Similarity=0.066  Sum_probs=18.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      =+++.|.+|+|||++.+.+...
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3788999999999999887554

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=89.76  E-value=0.066  Score=39.66  Aligned_cols=22  Identities=14%  Similarity=0.380  Sum_probs=18.7

Q ss_pred             CCeEEEEeecCCChHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFI  127 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~l  127 (247)
                      ++.-+.|.|+|++|||++.++|
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L   36 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTL   36 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTT
T ss_pred             cCCEEEEECCCCCCHHHHHHHH
Confidence            3446888999999999999887

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.71  E-value=0.085  Score=39.41  Aligned_cols=21  Identities=19%  Similarity=0.455  Sum_probs=18.3

Q ss_pred             EEEEeecCCChHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~  129 (247)
                      .+.+.|.+|+|||++.+.+..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478899999999999998843

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.60  E-value=0.39  Score=41.04  Aligned_cols=51  Identities=24%  Similarity=0.402  Sum_probs=32.2

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHH
Q psy1694          70 RVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIV  128 (247)
Q Consensus        70 ~~L~~~L~~~l~Gq~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la  128 (247)
                      +.++..+.+.  .-..+...+.+.++..      .+.|+.+.+.|.||+|||++..+|-
T Consensus        27 ~~i~~~~~~~--~~~~~~~~i~~~l~~~------~~~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          27 NLIELRMRAG--NIQLTNSAISDALKEI------DSSVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             HHHHHHHHHT--CHHHHHHHHHHHHHHH------HHCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             HHHHHHHhcC--CHHHHHHHHHHHHHhc------ccCCcEEEEECCCCCCHHHHHHHHh
Confidence            3455555442  2233444455544432      1256789999999999999999883

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.46  E-value=0.091  Score=38.90  Aligned_cols=21  Identities=24%  Similarity=0.464  Sum_probs=18.4

Q ss_pred             EEEEeecCCChHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~  129 (247)
                      .+.|.|.||+|||++.++|-+
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            378899999999999999943

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=89.27  E-value=0.063  Score=45.22  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=19.4

Q ss_pred             EEEEeecCCChHHHHHHHHHHHh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l  131 (247)
                      .+.|.|+-|+|||++++.+++.+
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC--
T ss_pred             EEEEECCcCCCHHHHHHHHHHHh
Confidence            47889999999999999998875

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.19  E-value=0.068  Score=39.82  Aligned_cols=21  Identities=29%  Similarity=0.338  Sum_probs=16.6

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|++|+|||++...+.+.
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            577899999999998877544

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.01  E-value=0.062  Score=40.04  Aligned_cols=21  Identities=29%  Similarity=0.271  Sum_probs=8.1

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|.+|+|||++.+.+...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999877554

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.67  E-value=0.086  Score=39.39  Aligned_cols=19  Identities=26%  Similarity=0.525  Sum_probs=17.1

Q ss_pred             EEEeecCCChHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIV  128 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la  128 (247)
                      +.|.|.||+|||++.+.|.
T Consensus         4 VaivG~~nvGKSTLin~L~   22 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMT   22 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            6788999999999999884

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=88.55  E-value=0.086  Score=39.52  Aligned_cols=18  Identities=28%  Similarity=0.650  Sum_probs=16.6

Q ss_pred             EEEeecCCChHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFI  127 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~l  127 (247)
                      +.|.|+|++|||++..+|
T Consensus         4 VaiiG~~nvGKSSLin~L   21 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVV   21 (185)
T ss_dssp             EEEESSTTSSHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            678999999999999887

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.38  E-value=0.12  Score=38.91  Aligned_cols=18  Identities=28%  Similarity=0.307  Sum_probs=16.9

Q ss_pred             EEEeecCCChHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFI  127 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~l  127 (247)
                      +++.|++|+|||++...+
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            788999999999999988

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.95  E-value=1.2  Score=36.05  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=19.6

Q ss_pred             EEEeecCCChHHHHHHHHHHHh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSI  131 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l  131 (247)
                      +.+.|++|+|||+++..++++.
T Consensus        71 ~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          71 IGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEeeCCCCCCHHHHHHHHHHHH
Confidence            6788999999999999998874

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.62  E-value=0.058  Score=39.31  Aligned_cols=21  Identities=19%  Similarity=0.458  Sum_probs=18.5

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +.|.|.||+|||++.+++...
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            678999999999999999654

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=87.51  E-value=0.17  Score=43.06  Aligned_cols=25  Identities=20%  Similarity=0.285  Sum_probs=20.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++++.|+||+|||++.+.+...+..
T Consensus        52 H~~I~G~tGsGKT~~l~~li~~~~~   76 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAYTGLL   76 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHHHHHHh
Confidence            5899999999999998877666544

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=87.17  E-value=1.4  Score=35.33  Aligned_cols=91  Identities=12%  Similarity=0.093  Sum_probs=48.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhccccCC-------------------C--CCcceeee---cccccCCCCChHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFKRYKDK-------------------G--TSRFVHKF---NSRIHFPNENHVSLYRL  164 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~~~~~g-------------------~--~~~~v~~~---~~~l~~~~~~~v~~~~~  164 (247)
                      ++.+.|..|+|||+++.++......-...|                   .  ...+..+.   ..-.....|++.. |.+
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~d-F~~   82 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD-FVG   82 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG-GHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhh-hhh
Confidence            577889999999999999844311100000                   0  00111111   0001122345544 433


Q ss_pred             HHHHHHHHHHHhCCCeEEEEeCCCCCChhhHHHHHhhccc
Q psy1694         165 QLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDH  204 (247)
Q Consensus       165 ~l~~~~~~~l~~~~~~vlilDEiek~~~~~~~~Ll~~Le~  204 (247)
                      .    ....+..++..++++|=.+-..+.....+....+.
T Consensus        83 e----~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~  118 (267)
T d2dy1a2          83 E----IRGALEAADAALVAVSAEAGVQVGTERAWTVAERL  118 (267)
T ss_dssp             H----HHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT
T ss_pred             h----hhhhhcccCceEEEeeccCCccchhHHHHHhhhhc
Confidence            2    22456788889999997777776665555544443

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=86.89  E-value=0.31  Score=40.65  Aligned_cols=37  Identities=14%  Similarity=0.259  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHH
Q psy1694          83 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVT  124 (247)
Q Consensus        83 q~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A  124 (247)
                      |+++.+.+...+...+.+.     ...++-+|.+|+|||++.
T Consensus        64 q~~vy~~v~~~v~~~l~G~-----n~~i~aYGqtgSGKT~T~  100 (342)
T d1f9va_          64 NVDVFKEVGQLVQSSLDGY-----NVCIFAYGQTGSGKTFTM  100 (342)
T ss_dssp             HHHHHHHHHHHHGGGGGTC-----CEEEEEECCTTSSHHHHH
T ss_pred             HHHHHHHhhhhhcchhccc-----ccceeeeeccCCcccccc
Confidence            5555555444444444332     234677999999999987

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.13  E-value=0.23  Score=37.03  Aligned_cols=23  Identities=17%  Similarity=0.044  Sum_probs=19.6

Q ss_pred             EEEeecCCChHHHHHHHHHHHhh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      +++.|.+|+|||++.+.+...-+
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~~   27 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIHG   27 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            68899999999999999866543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.98  E-value=0.19  Score=39.10  Aligned_cols=21  Identities=19%  Similarity=0.219  Sum_probs=17.7

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|++|+|||++.+.+...
T Consensus         9 illlG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           9 LLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            688999999999999887433

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=85.97  E-value=0.24  Score=41.83  Aligned_cols=37  Identities=16%  Similarity=0.220  Sum_probs=22.4

Q ss_pred             hHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHH
Q psy1694          83 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVT  124 (247)
Q Consensus        83 q~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A  124 (247)
                      |..+.+.+...+...+.+.+     ..++-+|++|+|||++.
T Consensus        56 q~~vy~~v~~lv~~~l~G~n-----~~i~aYGqTGSGKTyTm   92 (364)
T d1sdma_          56 QDDVFEDTKYLVQSAVDGYN-----VCIFAYGQTGSGKTFTI   92 (364)
T ss_dssp             HHHHHHTTTHHHHHHHTTCE-----EEEEEECSTTSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCc-----eeeeccccCCCCccccc
Confidence            44444444333444443332     24777899999999995

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=85.79  E-value=0.24  Score=40.73  Aligned_cols=23  Identities=26%  Similarity=0.235  Sum_probs=20.3

Q ss_pred             EEEeecCCChHHHHHHHHHHHhh
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .++.|++|+|||+++..++++..
T Consensus        46 ~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          46 GLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             EEEEECSSSSHHHHHHHHHHHHH
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHh
Confidence            68889999999999999998753

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=85.68  E-value=1.6  Score=33.17  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=21.2

Q ss_pred             CC-eEEEEeecCCChHHHHHHHHHHH
Q psy1694         106 KA-LAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       106 kp-l~lll~G~~GtGKt~~A~~la~~  130 (247)
                      || +++.+.|-+..|||+++.+|...
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHH
Confidence            46 56889999999999999988654

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=85.60  E-value=0.42  Score=43.85  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.6

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+++.|++|+|||+.++.|-++|.
T Consensus        88 sIiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          88 CVIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999988764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.58  E-value=0.25  Score=36.97  Aligned_cols=22  Identities=14%  Similarity=0.271  Sum_probs=18.8

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      -+++.|++|+|||++...+...
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3788999999999999887554

>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=85.40  E-value=0.84  Score=36.78  Aligned_cols=53  Identities=13%  Similarity=0.200  Sum_probs=29.6

Q ss_pred             HHhhcCC-hHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHHHHHHHHhhc
Q psy1694          76 LKQHVHG-QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus        76 L~~~l~G-q~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      +...+.. |..+++-+.+.+...   .  .......+|.=+.|+|||..|-++...+..
T Consensus        52 l~~~Lr~hQ~~gv~~l~~~~~~~---~--~~~~~g~iLaDemGlGKT~qaia~l~~l~~  105 (298)
T d1z3ix2          52 LSKVLRPHQREGVKFLWDCVTGR---R--IENSYGCIMADEMGLGKTLQCITLIWTLLK  105 (298)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHTTS---S--STTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             hhccccHHHHHHHHHHHHHHHhh---h--hccCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence            3334443 555555444433221   1  122335678889999999987665555443

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=85.08  E-value=0.16  Score=42.31  Aligned_cols=17  Identities=35%  Similarity=0.628  Sum_probs=14.6

Q ss_pred             EEEEeecCCChHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTD  125 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~  125 (247)
                      +.+|.|.+|||||+++.
T Consensus        16 valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          16 VAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEEECTTSCHHHHTC
T ss_pred             EEEEEccCCCCcccccc
Confidence            67899999999999663

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=85.02  E-value=0.46  Score=43.80  Aligned_cols=25  Identities=20%  Similarity=0.347  Sum_probs=22.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+++.|++|+|||..++.+-+++..
T Consensus       127 sIiisGeSGaGKTe~~k~il~yL~~  151 (712)
T d1d0xa2         127 SLLITGESGAGKTENTKKVIQYLAS  151 (712)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            7899999999999999999887653

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=84.91  E-value=0.47  Score=44.29  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=22.3

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+++.|++|+|||..++.+-++|..
T Consensus       125 sIiisGeSGaGKTe~~K~il~yL~~  149 (794)
T d2mysa2         125 SILITGESGAGKTVNTKRVIQYFAT  149 (794)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999888753

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=84.89  E-value=0.46  Score=43.84  Aligned_cols=24  Identities=21%  Similarity=0.391  Sum_probs=21.9

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+++.|++|+|||..++.+-+++.
T Consensus        96 ~IiisGeSGsGKTe~~k~il~~l~  119 (730)
T d1w7ja2          96 SIIVSGESGAGKTVSAKYAMRYFA  119 (730)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999988864

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.82  E-value=0.29  Score=41.32  Aligned_cols=37  Identities=19%  Similarity=0.314  Sum_probs=23.6

Q ss_pred             hHHHHHHHHHHHHHhhhcccCCCCCeEEEEeecCCChHHHHH
Q psy1694          83 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVT  124 (247)
Q Consensus        83 q~~a~~~l~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A  124 (247)
                      |+.+.+.+...+...+.+.+     ..++-+|++|+|||++.
T Consensus       106 Q~~Vy~~v~plv~~vl~G~n-----~ti~aYGqtGSGKT~Tm  142 (368)
T d2ncda_         106 QSDIFEMVSPLIQSALDGYN-----ICIFAYGQTGSGKTYTM  142 (368)
T ss_dssp             HHHHHTTTHHHHHHHHTTCE-----EEEEEECSTTSSHHHHH
T ss_pred             ccchHHHHHHHHHHHhcccc-----eeEEeeccCCCccceEe
Confidence            55555544444444443332     24777999999999985

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=84.64  E-value=0.49  Score=43.57  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=22.2

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+++.|++|.|||+.++.+-++|.
T Consensus        93 ~IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          93 SILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999988875

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=83.97  E-value=1.4  Score=31.75  Aligned_cols=26  Identities=15%  Similarity=0.268  Sum_probs=17.9

Q ss_pred             CCeEEEEeCCCCCChhhHHHHHhhccc
Q psy1694         178 DRAIFIFDEVDKFPKGLLDVIIPFIDH  204 (247)
Q Consensus       178 ~~~vlilDEiek~~~~~~~~Ll~~Le~  204 (247)
                      ...++++||++=++.. +..+...+.+
T Consensus        79 ~~dvI~IDE~QFf~d~-i~~~~~~~~~  104 (139)
T d2b8ta1          79 ETKVIGIDEVQFFDDR-ICEVANILAE  104 (139)
T ss_dssp             TCCEEEECSGGGSCTH-HHHHHHHHHH
T ss_pred             CcCEEEechhhhcchh-HHHHHHHHHh
Confidence            4589999999999854 4444444443

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.48  E-value=0.32  Score=40.61  Aligned_cols=21  Identities=33%  Similarity=0.387  Sum_probs=17.8

Q ss_pred             EEEEeecCCChHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~  129 (247)
                      .-+++||.|+|||.+..+|.=
T Consensus        27 l~~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999953

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=83.46  E-value=0.55  Score=37.08  Aligned_cols=25  Identities=24%  Similarity=0.405  Sum_probs=21.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~~  133 (247)
                      .+.++|.=|||||++|--||..|..
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~   27 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHA   27 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHh
Confidence            3556899999999999999999866

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=83.41  E-value=0.3  Score=36.41  Aligned_cols=24  Identities=17%  Similarity=0.397  Sum_probs=20.3

Q ss_pred             CCeEEEEeecCCChHHHHHHHHHH
Q psy1694         106 KALAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       106 kpl~lll~G~~GtGKt~~A~~la~  129 (247)
                      |.+++.+.|.|++|||++..+|.+
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHH
Confidence            345689999999999999999853

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.31  E-value=0.31  Score=36.08  Aligned_cols=21  Identities=19%  Similarity=0.229  Sum_probs=17.8

Q ss_pred             EEEeecCCChHHHHHHHHHHH
Q psy1694         110 ISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       110 lll~G~~GtGKt~~A~~la~~  130 (247)
                      +++.|..|+|||++.+.+..-
T Consensus         5 ivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            688999999999999877443

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=83.18  E-value=0.26  Score=40.89  Aligned_cols=16  Identities=38%  Similarity=0.667  Sum_probs=14.2

Q ss_pred             EEEEeecCCChHHHHH
Q psy1694         109 AISLHGLPGTGKNYVT  124 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A  124 (247)
                      +-+|.|-+|||||+++
T Consensus        16 ~alfFGLSGTGKTTLs   31 (313)
T d2olra1          16 VAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEEccCCCCcccce
Confidence            5689999999999976

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.14  E-value=0.33  Score=37.89  Aligned_cols=22  Identities=27%  Similarity=0.455  Sum_probs=18.7

Q ss_pred             EEEEeecCCChHHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~  130 (247)
                      +.+++|.-|+||||+.+.+.+.
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            4788999999999998887654

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.12  E-value=0.6  Score=38.42  Aligned_cols=38  Identities=18%  Similarity=0.179  Sum_probs=23.1

Q ss_pred             hHHHHHHHHH-HHHHhhhcccCCCCCeEEEEeecCCChHHHHHH
Q psy1694          83 QELAISHICG-ALKNHFQNRYHNTKALAISLHGLPGTGKNYVTD  125 (247)
Q Consensus        83 q~~a~~~l~~-~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A~  125 (247)
                      |+.+.+.+.. .+...+.+.+     ..++-+|++|+|||++..
T Consensus        56 q~~vf~~~~~~lv~~~l~G~n-----~~i~aYGqtgSGKTyT~~   94 (323)
T d1bg2a_          56 QEQVYNDCAKKIVKDVLEGYN-----GTIFAYGQTSSGKTHTME   94 (323)
T ss_dssp             HHHHHHHHTHHHHHHHHTTCC-----EEEEEECSTTSSHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHcCCC-----cceeeecccCCCCceecc
Confidence            4555444432 2334443332     247779999999999973

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.07  E-value=0.28  Score=39.44  Aligned_cols=21  Identities=29%  Similarity=0.415  Sum_probs=17.8

Q ss_pred             EEEEeecCCChHHHHHHHHHH
Q psy1694         109 AISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~  129 (247)
                      .-+|+||.|+|||++..+|.-
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            346799999999999999844

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=83.01  E-value=0.57  Score=43.67  Aligned_cols=24  Identities=21%  Similarity=0.284  Sum_probs=22.0

Q ss_pred             EEEEeecCCChHHHHHHHHHHHhh
Q psy1694         109 AISLHGLPGTGKNYVTDFIVSSIF  132 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A~~la~~l~  132 (247)
                      .+++.|++|+|||..++.+-++|.
T Consensus       123 ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         123 SCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999988875

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.07  E-value=0.56  Score=35.82  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=20.4

Q ss_pred             EEEE-eecCCChHHHHHHHHHHHhhc
Q psy1694         109 AISL-HGLPGTGKNYVTDFIVSSIFK  133 (247)
Q Consensus       109 ~lll-~G~~GtGKt~~A~~la~~l~~  133 (247)
                      ++.+ -|-.|+|||++|..+|..+..
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~la~   28 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVALAQ   28 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHh
Confidence            3444 488999999999999999765

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.83  E-value=0.31  Score=40.57  Aligned_cols=16  Identities=38%  Similarity=0.671  Sum_probs=14.5

Q ss_pred             EEEEeecCCChHHHHH
Q psy1694         109 AISLHGLPGTGKNYVT  124 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A  124 (247)
                      +.+|.|-+|||||++.
T Consensus        16 ~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          16 VTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEEccCCCCcccce
Confidence            5689999999999988

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=81.64  E-value=0.84  Score=38.04  Aligned_cols=37  Identities=16%  Similarity=0.177  Sum_probs=22.5

Q ss_pred             hHHHHHHH-HHHHHHhhhcccCCCCCeEEEEeecCCChHHHHH
Q psy1694          83 QELAISHI-CGALKNHFQNRYHNTKALAISLHGLPGTGKNYVT  124 (247)
Q Consensus        83 q~~a~~~l-~~~l~~~~~~~~~~~kpl~lll~G~~GtGKt~~A  124 (247)
                      |+.+.+.+ ...+...+.+..     ..++-+|++|+|||++.
T Consensus        60 q~~vy~~~~~plv~~~l~G~n-----~ti~aYG~tgSGKT~Tm   97 (354)
T d1goja_          60 QSDIFDFSIKPTVDDILNGYN-----GTVFAYGQTGAGKSYTM   97 (354)
T ss_dssp             HHHHHHHHTHHHHHHHTTTCC-----EEEEEECSTTSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccCc-----eeEEecccCCCCcceee
Confidence            55554433 233344443332     24777999999999886

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=81.32  E-value=0.85  Score=37.83  Aligned_cols=16  Identities=38%  Similarity=0.571  Sum_probs=13.9

Q ss_pred             EEEEeecCCChHHHHH
Q psy1694         109 AISLHGLPGTGKNYVT  124 (247)
Q Consensus       109 ~lll~G~~GtGKt~~A  124 (247)
                      .++-+|++|+|||++.
T Consensus        83 ~i~aYGqtgSGKTyTm   98 (345)
T d1x88a1          83 TIFAYGQTGTGKTFTM   98 (345)
T ss_dssp             EEEEEECTTSSHHHHH
T ss_pred             eEEeeeeccccceEEe
Confidence            4777999999999886

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=81.09  E-value=0.5  Score=36.28  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=20.4

Q ss_pred             CC-eEEEEeecCCChHHHHHHHHHH
Q psy1694         106 KA-LAISLHGLPGTGKNYVTDFIVS  129 (247)
Q Consensus       106 kp-l~lll~G~~GtGKt~~A~~la~  129 (247)
                      || .++.+.|.++.|||+++..|..
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHH
Confidence            45 6788999999999999998853

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=80.48  E-value=3  Score=33.43  Aligned_cols=23  Identities=22%  Similarity=0.190  Sum_probs=19.9

Q ss_pred             eEEEEeecCCChHHHHHHHHHHH
Q psy1694         108 LAISLHGLPGTGKNYVTDFIVSS  130 (247)
Q Consensus       108 l~lll~G~~GtGKt~~A~~la~~  130 (247)
                      .++-+.|..|+|||+++.++...
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~   29 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYY   29 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            37889999999999999999554