Psyllid ID: psy17042

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MSKKNTLKTKKEICEVLHQECDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYPTLLLS
Secondary Structure (PSIPRED)
cccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcc
Coil and Loop (DISEMBL)
mskkntlkTKKEICEVLHQECDQQIGLMLNRDLQLSYRDFAQDLLstcdqnpkiadipiqfkepiygsndpsftdfvapgVILTIVFFLAVALTSSALIIERMEGLldrswvagvtpLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGsfyptlllsgcfknmvypVNLAICELERNAIQLALGsfyptllls
Flexible Loop (DISEMBL)
mskkntlktkkEICEVLHQECDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYPTLLLS
Low Complexity Region (SEG)
MSKKNTLKTKKEICEVLHQECDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYPTLLLS
Disordered region (IsUnstruct)
***********EICEVLHQECDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYPTLL**
Disordered Region (DISOPRED)
**********KEICEVLHQECDQQIGLMLNRDLQLSYRDFAQD**************PIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYPTLLLS
Disordered Region (DISEMBL)
********TKKEICEVLHQECDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYPTLLLS
Disordered Region (DISPRO)
***KNTLKTKKEICEVLHQECDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYPTLLLS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKKNTLKTKKEICEVLHQECDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYPTLLLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
Q8T674	730	ABC transporter G family	yes	N/A	0.674	0.241	0.312	7e-21
Q55EH8	701	ABC transporter G family	no	N/A	0.670	0.249	0.254	2e-12

>sp|Q8T674|ABCGK_DICDI ABC transporter G family member 20 OS=Dictyostelium discoideum GN=abcG20 PE=3 SV=1

 Score =  101 bits (251), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 108/208 (51%), Gaps = 32/208 (15%)

Query: 21  CDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEP-IYGSNDPSFTDFVAP 79
            + QI L++ + L LS+   A+       Q   I   PI+   P +YG+ +  F DF+AP
Sbjct: 474 TNYQITLIVEQQLALSFETLAK-------QQANITMNPIKTVTPTVYGNPNSKFIDFLAP 526

Query: 80  GVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALV 139
           G++  I F  A+++TS + + E+++G LDR +  GV    I+F H +    ++  Q  ++
Sbjct: 527 GMVCLISFAHAISITSVSFVKEKVDGSLDRLFAYGVRTSSIVFGHFLGHLPLLLVQITVL 586

Query: 140 LIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFV 199
           L+  I+ F V  +G++ LV ++T+      + FV                   GM  G V
Sbjct: 587 LLIAIYGFNVPIEGNIALVFLMTV-----SLAFV-------------------GMSLGLV 622

Query: 200 ISAICELERNAIQLALGSFYPTLLLSGC 227
           ISA+  +E  AIQL+LG ++PTL+ SG 
Sbjct: 623 ISAVSRVETEAIQLSLGVYFPTLICSGT 650

Dictyostelium discoideum (taxid: 44689)

>sp|Q55EH8|ABCGN_DICDI ABC transporter G family member 23 OS=Dictyostelium discoideum GN=abcG23 PE=3 SV=2

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 37/212 (17%)

Query: 24  QIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVIL 83
           Q+ LM++   Q ++   A D          I  +P  F   +YG  + +F  F+AP +I 
Sbjct: 450 QMNLMVDVQFQKAFNKIAND--------SGIKLLPTNF-HAVYGDQNANFNWFLAPAMIC 500

Query: 84  TIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFM 143
            I +   +   S   + E+ +G  DR  + GV+P+  +  H++    ++  Q ++ L+  
Sbjct: 501 IITYVHCMNFLSITFVREKNDGTRDRILLYGVSPVSNVLGHILAHIPILLVQFSIQLLIA 560

Query: 144 IFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAI 203
           +F FGV  KG+++L+                    L  ++I T+     GMC G +IS I
Sbjct: 561 VFAFGVPIKGNIVLIY-------------------LFFILINTV-----GMCQGILISLI 596

Query: 204 CELERNAIQLALGSFYPTLLLSGCFKNMVYPV 235
            + E +A+QL L  F  +L ++G    +++P 
Sbjct: 597 SKAEVDAVQLCLAIFICSLCMAG----IIWPT 624

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
193700092	811	PREDICTED: ABC transporter G family memb	0.716	0.230	0.795	2e-89
328718628	781	PREDICTED: ABC transporter G family memb	0.716	0.239	0.795	3e-89
345496012	768	PREDICTED: ABC transporter G family memb	0.716	0.243	0.767	1e-86
322789827	809	hypothetical protein SINV_01380 [Solenop	0.716	0.231	0.753	2e-85
332027462	763	ABC transporter G family member 20 [Acro	0.716	0.245	0.753	2e-85
307196735	760	ABC transporter G family member 20 [Harp	0.716	0.246	0.748	6e-85
307187335	818	ABC transporter G family member 20 [Camp	0.716	0.228	0.753	8e-85
91090998	792	PREDICTED: similar to AGAP003680-PA [Tri	0.716	0.236	0.744	3e-84
270013184	767	hypothetical protein TcasGA2_TC011755 [T	0.716	0.243	0.744	4e-84
242005365	779	ABC transporter, putative [Pediculus hum	0.712	0.238	0.752	6e-84

>gi|193700092|ref|XP_001951744.1| PREDICTED: ABC transporter G family member 20-like isoform 1 [Acyrthosiphon pisum]

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 171/215 (79%), Positives = 180/215 (83%), Gaps = 28/215 (13%)

Query: 21  CDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPG 80
            +QQIGLMLNRDLQLSYRDF Q LLS+C+QNPK+ADIPIQFKEPIYGS+DPSFTDFVAPG
Sbjct: 560 SNQQIGLMLNRDLQLSYRDFGQGLLSSCEQNPKLADIPIQFKEPIYGSSDPSFTDFVAPG 619

Query: 81  VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL 140
           VILTIVFFLAVALTSSALIIER EGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL
Sbjct: 620 VILTIVFFLAVALTSSALIIERTEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL 679

Query: 141 IFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVI 200
           IFMI VFGVECKGD+ LVI LTILQGLC                        GMCFGFVI
Sbjct: 680 IFMIIVFGVECKGDITLVITLTILQGLC------------------------GMCFGFVI 715

Query: 201 SAICELERNAIQLALGSFYPTLLLSGCFKNMVYPV 235
           SAICELERNAIQLALGSFYPTLLLSG    +++PV
Sbjct: 716 SAICELERNAIQLALGSFYPTLLLSG----VIWPV 746

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328718628|ref|XP_003246532.1| PREDICTED: ABC transporter G family member 20-like isoform 2 [Acyrthosiphon pisum] gi|328718630|ref|XP_003246533.1| PREDICTED: ABC transporter G family member 20-like isoform 3 [Acyrthosiphon pisum]

 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 171/215 (79%), Positives = 180/215 (83%), Gaps = 28/215 (13%)

Query: 21  CDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPG 80
            +QQIGLMLNRDLQLSYRDF Q LLS+C+QNPK+ADIPIQFKEPIYGS+DPSFTDFVAPG
Sbjct: 530 SNQQIGLMLNRDLQLSYRDFGQGLLSSCEQNPKLADIPIQFKEPIYGSSDPSFTDFVAPG 589

Query: 81  VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL 140
           VILTIVFFLAVALTSSALIIER EGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL
Sbjct: 590 VILTIVFFLAVALTSSALIIERTEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL 649

Query: 141 IFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVI 200
           IFMI VFGVECKGD+ LVI LTILQGLC                        GMCFGFVI
Sbjct: 650 IFMIIVFGVECKGDITLVITLTILQGLC------------------------GMCFGFVI 685

Query: 201 SAICELERNAIQLALGSFYPTLLLSGCFKNMVYPV 235
           SAICELERNAIQLALGSFYPTLLLSG    +++PV
Sbjct: 686 SAICELERNAIQLALGSFYPTLLLSG----VIWPV 716

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496012|ref|XP_001604973.2| PREDICTED: ABC transporter G family member 20-like isoform 1 [Nasonia vitripennis] gi|345496014|ref|XP_003427623.1| PREDICTED: ABC transporter G family member 20-like isoform 2 [Nasonia vitripennis]

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 165/215 (76%), Positives = 179/215 (83%), Gaps = 28/215 (13%)

Query: 21  CDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPG 80
            +QQIGLML R+LQ SYRDFA+DLLSTCDQN K+AD+PIQFK+PIYGSN+PSFTDFVAPG
Sbjct: 517 SNQQIGLMLARNLQYSYRDFAKDLLSTCDQNSKLADVPIQFKDPIYGSNEPSFTDFVAPG 576

Query: 81  VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL 140
           VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGV+P EILFSHV+TQFVVMCGQTALVL
Sbjct: 577 VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVSPGEILFSHVVTQFVVMCGQTALVL 636

Query: 141 IFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVI 200
           IFMI VFGVECKGD+  VI+LTILQGLC                        GMCFGFVI
Sbjct: 637 IFMILVFGVECKGDIGWVIVLTILQGLC------------------------GMCFGFVI 672

Query: 201 SAICELERNAIQLALGSFYPTLLLSGCFKNMVYPV 235
           SAICELERNAIQLALGSFYPTLLLSG    +++PV
Sbjct: 673 SAICELERNAIQLALGSFYPTLLLSG----VIWPV 703

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789827|gb|EFZ14974.1| hypothetical protein SINV_01380 [Solenopsis invicta]

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 162/215 (75%), Positives = 179/215 (83%), Gaps = 28/215 (13%)

Query: 21  CDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPG 80
            +QQ+GLML R+LQ SYRDFA+DLLS+C+QN K+AD+PIQFK+PIYG+N+PSFTDFVAPG
Sbjct: 558 SNQQVGLMLARNLQYSYRDFAKDLLSSCEQNTKLADVPIQFKKPIYGTNEPSFTDFVAPG 617

Query: 81  VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL 140
           VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGV+P EILFSHV+TQFVVMCGQTALVL
Sbjct: 618 VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVSPGEILFSHVVTQFVVMCGQTALVL 677

Query: 141 IFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVI 200
           IFMI VFGVECKGD+  VIILTILQGLC                        GMCFGFVI
Sbjct: 678 IFMILVFGVECKGDIGWVIILTILQGLC------------------------GMCFGFVI 713

Query: 201 SAICELERNAIQLALGSFYPTLLLSGCFKNMVYPV 235
           SAICELERNAIQLALGSFYPTLLLSG    +++PV
Sbjct: 714 SAICELERNAIQLALGSFYPTLLLSG----VIWPV 744

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027462|gb|EGI67545.1| ABC transporter G family member 20 [Acromyrmex echinatior]

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 162/215 (75%), Positives = 179/215 (83%), Gaps = 28/215 (13%)

Query: 21  CDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPG 80
            +QQ+GLML R+LQ +YRDFA+DLLS+C+QN K+AD+PIQFKEPIYG+N+PSFTDFVAPG
Sbjct: 512 SNQQVGLMLARNLQYTYRDFAKDLLSSCEQNTKLADVPIQFKEPIYGTNEPSFTDFVAPG 571

Query: 81  VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL 140
           VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGV+P EILFSHV+TQFVVMCGQTALVL
Sbjct: 572 VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVSPGEILFSHVVTQFVVMCGQTALVL 631

Query: 141 IFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVI 200
           IFMI VFGVECKGD+  VIILTILQGLC                        GMCFGFVI
Sbjct: 632 IFMILVFGVECKGDIGWVIILTILQGLC------------------------GMCFGFVI 667

Query: 201 SAICELERNAIQLALGSFYPTLLLSGCFKNMVYPV 235
           SAICELERNAIQLALGSFYPTLLLSG    +++PV
Sbjct: 668 SAICELERNAIQLALGSFYPTLLLSG----VIWPV 698

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196735|gb|EFN78194.1| ABC transporter G family member 20 [Harpegnathos saltator]

 Score =  319 bits (818), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 161/215 (74%), Positives = 177/215 (82%), Gaps = 28/215 (13%)

Query: 21  CDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPG 80
            +QQIGLML+R+LQ SYRDF +DLLS+C+QN K+AD+PIQF++PIYGSNDPSFTDFVAPG
Sbjct: 509 SNQQIGLMLSRNLQYSYRDFVKDLLSSCNQNTKVADVPIQFEDPIYGSNDPSFTDFVAPG 568

Query: 81  VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL 140
           VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGV+P EILFSHV TQFVVMCGQTALVL
Sbjct: 569 VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVSPSEILFSHVATQFVVMCGQTALVL 628

Query: 141 IFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVI 200
           IFMI VFGVECKGD+  VI+LTILQG C                        GMCFGFVI
Sbjct: 629 IFMILVFGVECKGDIGWVIVLTILQGFC------------------------GMCFGFVI 664

Query: 201 SAICELERNAIQLALGSFYPTLLLSGCFKNMVYPV 235
           SAICELERNAIQLALGSFYPTLLLSG    +++PV
Sbjct: 665 SAICELERNAIQLALGSFYPTLLLSG----VIWPV 695

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187335|gb|EFN72463.1| ABC transporter G family member 20 [Camponotus floridanus]

 Score =  319 bits (817), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 162/215 (75%), Positives = 177/215 (82%), Gaps = 28/215 (13%)

Query: 21  CDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPG 80
            +QQIGLML R+LQ SYRDFA+DLL++C QN K+ADIPIQFK+PIYG+NDPSFTDFVAPG
Sbjct: 567 SNQQIGLMLARNLQYSYRDFAKDLLTSCHQNAKLADIPIQFKDPIYGTNDPSFTDFVAPG 626

Query: 81  VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL 140
           VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGV+P EILFSHV+TQFVVMCGQTALVL
Sbjct: 627 VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVSPGEILFSHVVTQFVVMCGQTALVL 686

Query: 141 IFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVI 200
           IFMI VF VECKGD+  VIILTILQGLC                        GMCFGF+I
Sbjct: 687 IFMILVFDVECKGDIGWVIILTILQGLC------------------------GMCFGFLI 722

Query: 201 SAICELERNAIQLALGSFYPTLLLSGCFKNMVYPV 235
           SAICELERNAIQLALGSFYPTLLLSG    +++PV
Sbjct: 723 SAICELERNAIQLALGSFYPTLLLSG----VIWPV 753

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090998|ref|XP_974932.1| PREDICTED: similar to AGAP003680-PA [Tribolium castaneum]

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 160/215 (74%), Positives = 176/215 (81%), Gaps = 28/215 (13%)

Query: 21  CDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPG 80
            +QQIG++L RDLQLSY+DFA+DLL  C+QNP +A+IPI FKEPIYGSN PSFTDFVAPG
Sbjct: 541 SNQQIGIILQRDLQLSYQDFAKDLLGACEQNPDLAEIPISFKEPIYGSNKPSFTDFVAPG 600

Query: 81  VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL 140
           VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTP EILFSHV+TQFVVMCGQTALVL
Sbjct: 601 VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPGEILFSHVVTQFVVMCGQTALVL 660

Query: 141 IFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVI 200
           IFMI VFGV+CKGD+  VI+LTILQGLC                        GMCFGFVI
Sbjct: 661 IFMILVFGVQCKGDIGWVIVLTILQGLC------------------------GMCFGFVI 696

Query: 201 SAICELERNAIQLALGSFYPTLLLSGCFKNMVYPV 235
           SAICELERNAIQLALGSFYPTLLLSG    +++P+
Sbjct: 697 SAICELERNAIQLALGSFYPTLLLSG----VIWPI 727

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013184|gb|EFA09632.1| hypothetical protein TcasGA2_TC011755 [Tribolium castaneum]

 Score =  317 bits (811), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 160/215 (74%), Positives = 176/215 (81%), Gaps = 28/215 (13%)

Query: 21  CDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPG 80
            +QQIG++L RDLQLSY+DFA+DLL  C+QNP +A+IPI FKEPIYGSN PSFTDFVAPG
Sbjct: 516 SNQQIGIILQRDLQLSYQDFAKDLLGACEQNPDLAEIPISFKEPIYGSNKPSFTDFVAPG 575

Query: 81  VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL 140
           VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTP EILFSHV+TQFVVMCGQTALVL
Sbjct: 576 VILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPGEILFSHVVTQFVVMCGQTALVL 635

Query: 141 IFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVI 200
           IFMI VFGV+CKGD+  VI+LTILQGLC                        GMCFGFVI
Sbjct: 636 IFMILVFGVQCKGDIGWVIVLTILQGLC------------------------GMCFGFVI 671

Query: 201 SAICELERNAIQLALGSFYPTLLLSGCFKNMVYPV 235
           SAICELERNAIQLALGSFYPTLLLSG    +++P+
Sbjct: 672 SAICELERNAIQLALGSFYPTLLLSG----VIWPI 702

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005365|ref|XP_002423539.1| ABC transporter, putative [Pediculus humanus corporis] gi|212506668|gb|EEB10801.1| ABC transporter, putative [Pediculus humanus corporis]

 Score =  316 bits (810), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 161/214 (75%), Positives = 176/214 (82%), Gaps = 28/214 (13%)

Query: 22  DQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGV 81
           +QQIGLMLNRDLQL+YR FAQD+L+ C+ NPK+ADIPIQFK+PIYGS+DPSFTDFVAPGV
Sbjct: 529 NQQIGLMLNRDLQLTYRTFAQDVLTECEHNPKLADIPIQFKDPIYGSSDPSFTDFVAPGV 588

Query: 82  ILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLI 141
           ILTIVFFLAVALTSSALIIER EGLLDRSWVAGVTP+EILFSHV+TQFVVMCGQTALVLI
Sbjct: 589 ILTIVFFLAVALTSSALIIERTEGLLDRSWVAGVTPVEILFSHVVTQFVVMCGQTALVLI 648

Query: 142 FMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVIS 201
           FMI VF VEC G L  ++ILTILQGLC                        GMCFGFVIS
Sbjct: 649 FMICVFQVECHGPLHWIVILTILQGLC------------------------GMCFGFVIS 684

Query: 202 AICELERNAIQLALGSFYPTLLLSGCFKNMVYPV 235
           AICELERNAIQLALGSFYPTLLLSG    +++PV
Sbjct: 685 AICELERNAIQLALGSFYPTLLLSG----VIWPV 714

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
FB|FBgn0039594	808	CG9990 [Drosophila melanogaste	0.578	0.186	0.781	3.3e-71
FB|FBgn0053970	777	CG33970 [Drosophila melanogast	0.601	0.202	0.525	1.2e-39
ZFIN|ZDB-GENE-050517-42	705	abch1 "ATP-binding cassette, s	0.567	0.209	0.443	4.3e-33
FB|FBgn0031734	711	CG11147 [Drosophila melanogast	0.578	0.212	0.390	1.8e-30
DICTYBASE|DDB_G0267430	730	abcG20 "ABC transporter G fami	0.536	0.191	0.310	1.7e-14
DICTYBASE|DDB_G0269026	701	abcG23 "ABC transporter G fami	0.639	0.238	0.254	2e-11
TIGR_CMR|DET_0814	241	DET_0814 "ABC transporter, per	0.363	0.394	0.284	3.6e-08
TIGR_CMR|BA_2542	339	BA_2542 "ABC transporter, perm	0.620	0.477	0.227	2e-06
TIGR_CMR|DET_0795	339	DET_0795 "ABC transporter, per	0.432	0.333	0.275	5.6e-05
TIGR_CMR|DET_0519	365	DET_0519 "ABC transporter, per	0.490	0.350	0.248	0.00024

FB|FBgn0039594 CG9990 [Drosophila melanogaster (taxid:7227)]

 Score = 623 (224.4 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
 Identities = 118/151 (78%), Positives = 134/151 (88%)

Query:    22 DQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGV 81
             +QQIG+MLNRD+QL++RDFA  LL  C  NPK+ D+PIQF++PIYG+ +PSFTDFVAPGV
Sbjct:   558 NQQIGVMLNRDIQLAFRDFAMGLLGQCGSNPKLGDVPIQFRDPIYGTMNPSFTDFVAPGV 617

Query:    82 ILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLI 141
             ILTIVFFLAVALTSSALIIER EGLLDRSWVAGV+P EILFSHVITQFVVMCGQT LVLI
Sbjct:   618 ILTIVFFLAVALTSSALIIERTEGLLDRSWVAGVSPFEILFSHVITQFVVMCGQTTLVLI 677

Query:   142 FMIFVFGVECKGDLLLVIILTILQGLCGMCF 172
             FM+ VFGV   GDL  VI+LT+LQG+CGMCF
Sbjct:   678 FMLVVFGVTNNGDLFWVIVLTLLQGMCGMCF 708

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

FB|FBgn0053970 CG33970 [Drosophila melanogaster (taxid:7227)]

 Score = 430 (156.4 bits), Expect = 1.2e-39, P = 1.2e-39
 Identities = 84/160 (52%), Positives = 112/160 (70%)

Query:    22 DQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGV 81
             +QQI  +L RDLQ ++ +F  D+LS CD NPK+  +P+ F+ P+YG  +P+FTDF APGV
Sbjct:   527 NQQISQLLYRDLQYTFFNFVGDMLSDCDVNPKLGRVPVDFQHPVYGYRNPNFTDFAAPGV 586

Query:    82 ILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLI 141
             ILTI+FFLAVA+TS A++I+R EG+L+R  VAG+T  EIL S V+TQF VM  QT  VLI
Sbjct:   587 ILTIIFFLAVAVTSGAMLIDRNEGMLERCLVAGITGPEILLSQVVTQFTVMLSQTTFVLI 646

Query:   142 FMIFVFGVECKGDLLLVIILTILQGLCGMCF---VECKGD 178
                + F +   G++ LV+ L IL GLCGM F   + C  D
Sbjct:   647 VSFYFFELTLVGNIWLVVALCILNGLCGMSFGFVISCAVD 686

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-050517-42 abch1 "ATP-binding cassette, sub-family H, member 1" [Danio rerio (taxid:7955)]

 Score = 335 (123.0 bits), Expect = 4.3e-33, Sum P(2) = 4.3e-33
 Identities = 67/151 (44%), Positives = 99/151 (65%)

Query:    22 DQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGV 81
             ++QI LML + L  ++  F +  L +      +  +PI+F+EPIYGS +  FT FV PG 
Sbjct:   459 NRQIALMLQKKLHQAFEAFMEKRLGSMSY---MVAVPIKFEEPIYGSKNTDFTTFVTPGA 515

Query:    82 ILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLI 141
             +L+I F+LAV LT+ + ++ER EGLLDR WVAGV+ LE + +H+ +Q  V+  Q  L+LI
Sbjct:   516 VLSITFYLAVGLTALSFVLERKEGLLDRCWVAGVSSLETMLAHLFSQLFVISVQIILLLI 575

Query:   142 FMIFVFGVECKGDLLLVIILTILQGLCGMCF 172
             F + VF +  +G L LVI L +LQG+ G+ F
Sbjct:   576 FTLLVFNIPNEGSLALVISLIVLQGVTGISF 606

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

FB|FBgn0031734 CG11147 [Drosophila melanogaster (taxid:7227)]

 Score = 318 (117.0 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
 Identities = 59/151 (39%), Positives = 97/151 (64%)

Query:    22 DQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGV 81
             DQQ+   + R L+  +  F + ++  C+ +  I D+P+QF+EPI+GS D  F  + APGV
Sbjct:   462 DQQVAYFMQRKLRDKFSTFMRSVVKDCNVSTAIVDLPVQFQEPIFGSTDIEFQQYCAPGV 521

Query:    82 ILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLI 141
             ++T+VFFLA  +T++  I ERM+G+ DR+ +AGV+  E+L++H++TQ ++M  Q+  V++
Sbjct:   522 VMTMVFFLATLMTAAVFISERMDGIWDRTLLAGVSATEMLWAHLLTQLIIMALQSFEVIM 581

Query:   142 FMIFVFGVECKGDLLLVIILTILQGLCGMCF 172
             ++  VF     GD   +I L  L   CGM F
Sbjct:   582 YIGLVFDTYNNGDTTTLIGLLTLTAFCGMLF 612

GO:0005215 "transporter activity" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

DICTYBASE|DDB_G0267430 abcG20 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 196 (74.1 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 46/148 (31%), Positives = 81/148 (54%)

Query:    24 QIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEP-IYGSNDPSFTDFVAPGVI 82
             QI L++ + L LS+   A+       Q   I   PI+   P +YG+ +  F DF+APG++
Sbjct:   477 QITLIVEQQLALSFETLAK-------QQANITMNPIKTVTPTVYGNPNSKFIDFLAPGMV 529

Query:    83 LTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIF 142
               I F  A+++TS + + E+++G LDR +  GV    I+F H +    ++  Q  ++L+ 
Sbjct:   530 CLISFAHAISITSVSFVKEKVDGSLDRLFAYGVRTSSIVFGHFLGHLPLLLVQITVLLLI 589

Query:   143 MIFVFGVECKGDLLLVIILTILQGLCGM 170
              I+ F V  +G++ LV ++T+     GM
Sbjct:   590 AIYGFNVPIEGNIALVFLMTVSLAFVGM 617

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0006810 "transport" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0269026 abcG23 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 179 (68.1 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 46/181 (25%), Positives = 88/181 (48%)

Query:    24 QIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVIL 83
             Q+ LM++   Q ++   A D         K+  +P  F   +YG  + +F  F+AP +I 
Sbjct:   450 QMNLMVDVQFQKAFNKIAND------SGIKL--LPTNF-HAVYGDQNANFNWFLAPAMIC 500

Query:    84 TIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFM 143
              I +   +   S   + E+ +G  DR  + GV+P+  +  H++    ++  Q ++ L+  
Sbjct:   501 IITYVHCMNFLSITFVREKNDGTRDRILLYGVSPVSNVLGHILAHIPILLVQFSIQLLIA 560

Query:   144 IFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAI 203
             +F FGV  KG+++L+ +  IL    GMC    +G L+ +I    +  +  +C    I ++
Sbjct:   561 VFAFGVPIKGNIVLIYLFFILINTVGMC----QGILISLISKAEVDAV-QLCLAIFICSL 615

Query:   204 C 204
             C
Sbjct:   616 C 616

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

TIGR_CMR|DET_0814 DET_0814 "ABC transporter, permease protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 144 (55.7 bits), Expect = 3.6e-08, P = 3.6e-08
 Identities = 27/95 (28%), Positives = 56/95 (58%)

Query:    70 DPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQF 129
             D +  D++AP ++ T+  F +  LT  + + E  +G ++R   A V+ L+I+  +++  F
Sbjct:    42 DATVLDYIAPAMLATLALFFSFLLTGISFLRETSQGTMERLMAAPVSRLDIVAGYLLGFF 101

Query:   130 VVMCGQTALVLIFMIFVFGVECKGDLLLVIILTIL 164
             V    QT ++++F I+V GV  +G+L  +++  +L
Sbjct:   102 VFALLQTLIIVLFTIYVLGVNFQGELWQILLFQVL 136

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TIGR_CMR|BA_2542 BA_2542 "ABC transporter, permease protein, putative" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 117 (46.2 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
 Identities = 38/167 (22%), Positives = 80/167 (47%)

Query:     9 TKKEICEVLHQECDQQIGLMLNR-DLQLSYRDFAQD--LLSTCDQNPKIADIPIQFKEPI 65
             T+K + E+ +Q+ D  I L   + ++ L   D +++  +L    ++ +  DI I   E  
Sbjct:    73 TEKAMSELENQKVDAVIRLENGKMNIVLEGSDSSKNRAVLQILQKSTEKNDISIMKPEVN 132

Query:    66 Y--GSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFS 123
             Y  GS D +  D + P +I    FF    L+  + + ER+ G L+R     +   EI+  
Sbjct:   133 YLHGSKDFTMFDGLGPVLIGFFTFFFVFILSGVSFVRERLSGALERLLSTPIKRWEIVVG 192

Query:   124 HVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGM 170
             ++I   +    Q+ +++ F +++  +   G + L +++T +  L  +
Sbjct:   193 YIIGFGIFAFIQSIIIVSFSVYILDLYVAGSIWLTLLITCMLSLTAL 239

GO:0006810 "transport" evidence=ISS

TIGR_CMR|DET_0795 DET_0795 "ABC transporter, permease protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 121 (47.7 bits), Expect = 5.6e-05, P = 5.6e-05
 Identities = 32/116 (27%), Positives = 60/116 (51%)

Query:    51 NPKIADIPIQFK--EPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLD 108
             N +I   P+ F+  E    + D S   F  PGV+   + FL +  ++  LI +R + +L 
Sbjct:   121 NREITQTPVLFEISEETIQTKDMSMMSFFIPGVLAMSIMFLGI-YSAMPLIQQREKKILK 179

Query:   109 RSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTIL 164
             R   + ++   I+FS V+ +  +   QT ++++    +FGVE  G+  L++ L +L
Sbjct:   180 RLGASPISRSTIIFSQVVLRLGLAVLQTVIIIVIGQLMFGVEILGNWWLLLGLVML 235

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TIGR_CMR|DET_0519 DET_0519 "ABC transporter, permease protein, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 116 (45.9 bits), Expect = 0.00024, P = 0.00024
 Identities = 35/141 (24%), Positives = 73/141 (51%)

Query:    32 DLQLSYRDFAQDLLSTCDQNPKIADIPIQFK-EPIYGSNDPSFTDFVAPGVILTIVFFLA 90
             D+Q +    +Q L + C    KI +IP+    +P+   N  +  DF++PG+I   VF L 
Sbjct:   129 DIQAAGEILSQ-LNAVCRAFAKI-EIPLSINAQPVNIENKITNIDFISPGII---VFGLL 183

Query:    91 VALTSSALII--ERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMI--FV 146
             + + +SA I+  ++ +G + R       P++ +  + ++   +   Q   ++ FM+  ++
Sbjct:   184 ILIPTSARIMVRDKEKGFMSRMLTTPSRPVDFILGYSLSMTFICIIQ---IIFFMLLGYL 240

Query:   147 FGVECKGDLLLVIILTILQGL 167
             FG++  G++ L  ++  L GL
Sbjct:   241 FGMDITGNIALAFLIFFLTGL 261


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.145   0.438    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      261       261   0.00090  114 3  11 22  0.49    32
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  179 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.33u 0.10s 22.43t   Elapsed:  00:00:02
  Total cpu time:  22.33u 0.10s 22.43t   Elapsed:  00:00:02
  Start:  Thu Aug 15 16:48:52 2013   End:  Thu Aug 15 16:48:54 2013

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	261
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	4e-07
COG0842	286	COG0842, COG0842, ABC-type multidrug transport sys	7e-07
pfam12698	278	pfam12698, ABC2_membrane_3, ABC-2 family transport	4e-05

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 41/208 (19%), Positives = 81/208 (38%), Gaps = 31/208 (14%)

Query: 23  QQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVI 82
            Q+  +L R+    +RD +  LL      P +  +       ++G+ D S      PG++
Sbjct: 1   TQLKALLKREFLRRWRDPSLGLLWRL-IQPLLMALVFGT---VFGNLDTSLGGLNRPGLL 56

Query: 83  LTIVFFLAV-ALTSSALIIERMEGLLDRSWVAGV-TPLEILFSHVITQFVVMCGQTALVL 140
              + F A  +LT  + +  R  G+L+R   + + +P   + + ++ +  +   Q  + L
Sbjct: 57  FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116

Query: 141 IFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVI 200
           + + F+ G+                               L +++ +L  L     G  I
Sbjct: 117 LIVYFMVGLP-------------------------VSRFFLFLLVLLLTALAASGLGLFI 151

Query: 201 SAICELERNAIQLALGSFYPTLLLSGCF 228
           +A+     +A Q+      P LLLSG F
Sbjct: 152 AALAPSFEDASQIGPLLLLPLLLLSGFF 179

Length = 210

>gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]

 Score = 48.8 bits (116), Expect = 7e-07
 Identities = 37/106 (34%), Positives = 54/106 (50%)

Query: 67  GSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVI 126
            +    +  F+ PGVIL  V F  +   SSAL  ER  G L+R  V+ V+ L IL   ++
Sbjct: 80  SNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIV 139

Query: 127 TQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCF 172
              VV      LVL+ + F+ GV   G LLL+++L +L  L  +  
Sbjct: 140 PYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVAL 185

Length = 286

>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 30/159 (18%), Positives = 74/159 (46%), Gaps = 12/159 (7%)

Query: 53  KIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWV 112
            + + P+  +     + +  +  ++   ++L ++  +   + + +++ E+   + +R  V
Sbjct: 73  ALKNAPVNVEITPLFNPNSGYAYYLLG-LLLFLLILIGALIIALSIVEEKESRIKERLLV 131

Query: 113 AGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK-GDLLLVIILTILQGLCGMC 171
           +GV+PL+ L   ++   +V   Q   +LI ++ +FG+    G+LLL+++L +L GL  + 
Sbjct: 132 SGVSPLKYLLGKILGDLLVGLIQ---LLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIA 188

Query: 172 F-------VECKGDLLLVIILTILQGLCGMCFGFVISAI 203
                    +     +LVI + IL         F +  +
Sbjct: 189 LGALLGSLFKNSEAAILVISILILLLSGFFGGLFPLPNM 227

This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	99.87
TIGR01248	152	drrC daunorubicin resistance protein C. The model	99.86
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	99.85
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	99.81
PRK15066	257	inner membrane transport permease; Provisional	99.79
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	99.78
COG0842	286	ABC-type multidrug transport system, permease comp	99.75
PF12698	344	ABC2_membrane_3: ABC-2 family transporter protein;	99.74
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	99.74
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	99.5
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	99.36
COG1668	407	NatB ABC-type Na+ efflux pump, permease component	99.28
PF12679	277	ABC2_membrane_2: ABC-2 family transporter protein	99.03
PF03379	215	CcmB: CcmB protein; InterPro: IPR003544 Within mit	98.84
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	98.76
TIGR01190	211	ccmB heme exporter protein CcmB. This model descri	98.7
PLN03211	659	ABC transporter G-25; Provisional	98.69
COG1277	278	NosY ABC-type transport system involved in multi-c	98.69
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.58
PLN03140	1470	ABC transporter G family member; Provisional	98.53
PLN03140	1470	ABC transporter G family member; Provisional	98.51
COG1682	263	TagG ABC-type polysaccharide/polyol phosphate expo	98.51
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.4
PF12730	232	ABC2_membrane_4: ABC-2 family transporter protein	98.25
COG2386	221	CcmB ABC-type transport system involved in cytochr	98.25
KOG0065|consensus	1391		98.25
KOG0061|consensus	613		98.24
PRK15176	264	Vi polysaccharide export inner membrane protein Ve	97.98
PF06182	229	ABC2_membrane_6: ABC-2 family transporter protein;	97.63
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	97.5
COG4200	239	Uncharacterized protein conserved in bacteria [Fun	97.47
KOG0065|consensus	1391		97.38
TIGR03733	248	lanti_perm_MutG lantibiotic protection ABC transpo	97.27
PF12051	382	DUF3533: Protein of unknown function (DUF3533); In	97.26
COG4587	268	ABC-type uncharacterized transport system, permeas	97.14
PF13346	206	ABC2_membrane_5: ABC-2 family transporter protein	96.47
TIGR03732	241	lanti_perm_MutE lantibiotic protection ABC transpo	96.43
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	96.15
COG1511	780	Predicted membrane protein [Function unknown]	96.14
COG3559	536	TnrB3 Putative exporter of polyketide antibiotics	96.03
KOG0059|consensus	885		87.82
PF09847	449	DUF2074: Predicted permease (DUF2074); InterPro: I	84.77

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=99.87  E-value=7.8e-21  Score=168.16  Aligned_cols=158  Identities=16%  Similarity=0.135  Sum_probs=132.7

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy17042         70 DPSFTDFVAPGVILTIVFFLAVALTSS-ALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFG  148 (261)
Q Consensus        70 ~~~y~~~~~p~~i~~~~~~~~~~~~~~-~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g  148 (261)
                      +.+|.+|++||++.+..+..+...+.. .+.+|||+|++||++.+|+++.++++||.+...+.+.++..++..+. ..+|
T Consensus        53 g~~y~~f~~pg~l~~~~~~~~~~~~~~~~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~-~~~g  131 (253)
T TIGR01291        53 GVSYAAFLAAGMVATSAMTASTFETIYATFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVT-ATLG  131 (253)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Confidence            457999999999999877766544443 57899999999999999999999999999999999988887665544 4566


Q ss_pred             ccccchHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Q psy17042        149 VECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCF  228 (261)
Q Consensus       149 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~  228 (261)
                      .....++....                        ...+++.+++.++|++++.+.|+.+++..+.+++..|++++||+ 
T Consensus       132 ~~~~~~~l~~~------------------------~~~ll~~l~~~~lg~~~a~~~~~~~~~~~i~~~i~~pl~flSg~-  186 (253)
T TIGR01291       132 YIEWWSLIYIL------------------------PVIALTGLAFASLSMLVAALAPSYAYFAFYQSLVITPMLFLSGV-  186 (253)
T ss_pred             hchhhhHHHHH------------------------HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-
Confidence            55444443333                        45556778888999999999999999999999999999999999 


Q ss_pred             CCccccccccHHHHHHHHHHhhhhhhhc
Q psy17042        229 KNMVYPVNLAICELERNAIQLALGSFYP  256 (261)
Q Consensus       229 ~~~~~P~~~~P~~l~~~~~~~p~~~~~p  256 (261)
                         +||.+.+|+|+|.++++.|++|..-
T Consensus       187 ---~~P~~~mP~~lq~i~~~nPlt~~v~  211 (253)
T TIGR01291       187 ---VFPVFQLNDVIQGMTHFLPLAHSID  211 (253)
T ss_pred             ---hcCHHhChHHHHHHHHHCcHHHHHH
Confidence               9999999999999999999999753

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>TIGR01248 drrC daunorubicin resistance protein C

Probab=99.86  E-value=1.8e-20  Score=153.85  Aligned_cols=138  Identities=14%  Similarity=0.172  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHhhhcccc
Q psy17042         91 VALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGM  170 (261)
Q Consensus        91 ~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~  170 (261)
                      .+.++..+.+|||+|++||++++|++|+++++||.+...++++++..++++++ ..+|++..+++....           
T Consensus         5 ~~~~~~~i~~dr~~G~~~~l~~tP~~~~~~~~g~~l~~~~~~~~~~~ii~~v~-~~~g~~~~~~~~~~~-----------   72 (152)
T TIGR01248         5 SLFNAIDITIDREIGLLSRLWVLPIHRASALLARIIAETIRAFIGTILILAIA-LALGFRFRNGVAAAL-----------   72 (152)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCcHHHHH-----------
Confidence            34566778999999999999999999999999999999999999999988888 467999887654433           


Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhh
Q psy17042        171 CFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLA  250 (261)
Q Consensus       171 ~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p  250 (261)
                                ..+.+..+..+++.++|..++...|+++... ..+++.+|+.++||.    ++|++.||+|+|+++++.|
T Consensus        73 ----------~~~~~~~l~~~~f~~l~~~~a~~~~~~~~~~-~~~~v~~pl~flsg~----~~P~~~mP~wlq~ia~~~P  137 (152)
T TIGR01248        73 ----------LFLLIPSIFGIAFAALVMAMALRKEGRFAME-ALELAQAAAAFLNPG----ATPIKLFPDWAQPLIAHQP  137 (152)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhhh----hcCHHhCcHHHHHHHhhCC
Confidence                      1113444556667777777777777765544 457788999999999    9999999999999999999


Q ss_pred             hhhhh
Q psy17042        251 LGSFY  255 (261)
Q Consensus       251 ~~~~~  255 (261)
                      ++|..
T Consensus       138 lt~~~  142 (152)
T TIGR01248       138 ISPAI  142 (152)
T ss_pred             ccHHH
Confidence            99975

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=99.85  E-value=7.2e-20  Score=159.59  Aligned_cols=156  Identities=17%  Similarity=0.119  Sum_probs=124.5

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q psy17042         72 SFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVEC  151 (261)
Q Consensus        72 ~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~  151 (261)
                      ++.+|++|+.+.+.....+....+..+.+|||+|++||++.+|++++++++||.+...+....+..+.... ...+|.+.
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~er~~G~l~rl~~~P~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~  111 (232)
T TIGR00025        33 NRGATFIPVLMALAAISTAFTGQAIAVARDRRYGALKRLGATPLPRLGILAGRSLAVVARVFLQTLILLVI-GFVLGFRF  111 (232)
T ss_pred             cchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCc
Confidence            45678888888888777888888899999999999999999999999999999888888877776555444 45778887


Q ss_pred             cchHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhcCCC
Q psy17042        152 KGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICE---LERNAIQLALGSFYPTLLLSGCF  228 (261)
Q Consensus       152 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~---~~~~a~~~~~~~~~p~~~~sG~~  228 (261)
                      .++.....                        ....+..+...+++..++.+.+   +.+.+..+.+....|+.++||. 
T Consensus       112 ~~~~~~~~------------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~p~~~lSG~-  166 (232)
T TIGR00025       112 AGGALTAL------------------------TLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANLVWFIFALLSAG-  166 (232)
T ss_pred             CCchHHHH------------------------HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhe-
Confidence            76654443                        3333444555666777777764   4445577888889999999999 


Q ss_pred             CCccccccccHHHHHHHHHHhhhhhhhc
Q psy17042        229 KNMVYPVNLAICELERNAIQLALGSFYP  256 (261)
Q Consensus       229 ~~~~~P~~~~P~~l~~~~~~~p~~~~~p  256 (261)
                         ++|.+.||+|+|++++++|++|..-
T Consensus       167 ---~~P~~~mP~~lq~i~~~~P~t~~~~  191 (232)
T TIGR00025       167 ---LVPLNLIPTWIKWFVRVQPSSYATE  191 (232)
T ss_pred             ---eeecccccHHHHHHHHhCcHHHHHH
Confidence               9999999999999999999999753

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=99.81  E-value=2.9e-18  Score=149.54  Aligned_cols=156  Identities=19%  Similarity=0.280  Sum_probs=131.6

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy17042         70 DPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGV  149 (261)
Q Consensus        70 ~~~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~  149 (261)
                      +.+|.+|+.||++.+..+..+.. .+.....|||+|+++|++.+|++++++++||.+...+...++.++...+..+.++.
T Consensus        43 g~~y~~fl~~G~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~  121 (236)
T TIGR01247        43 GVDYMTYLVPGIVAMTVFNMSFF-SGISVIWDRQFGFLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAIL  121 (236)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHhCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45899999999999877665544 45667899999999999999999999999999999999999988887777666665


Q ss_pred             cccchHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Q psy17042        150 ECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFK  229 (261)
Q Consensus       150 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~  229 (261)
                      +..+.....                         +...++.++..++|.+++...||++.+..+...+..|+.++||.  
T Consensus       122 ~~~~~~~~~-------------------------~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~~~~~l~~lsG~--  174 (236)
T TIGR01247       122 KPSGVIPTL-------------------------VLAFIVGVALSGLGVAIAARMDSMEGFQIIMSMLMLPMFFLSGA--  174 (236)
T ss_pred             hhhhHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHh--
Confidence            543322222                         34445667788999999999999999999999999999999999  


Q ss_pred             CccccccccHHHHHHHHHHhhhhhhh
Q psy17042        230 NMVYPVNLAICELERNAIQLALGSFY  255 (261)
Q Consensus       230 ~~~~P~~~~P~~l~~~~~~~p~~~~~  255 (261)
                        +||.+.+|+|+|+++++.|++|..
T Consensus       175 --~~P~~~~P~~~~~i~~~~P~~~~~  198 (236)
T TIGR01247       175 --FYPITTMPAWMQGLAKINPLTYAV  198 (236)
T ss_pred             --hcCHHhCHHHHHHHHHHCcHHHHH
Confidence              999999999999999999999875

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK15066 inner membrane transport permease; Provisional

Probab=99.79  E-value=8.4e-18  Score=148.86  Aligned_cols=157  Identities=14%  Similarity=0.147  Sum_probs=130.2

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy17042         70 DPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGV  149 (261)
Q Consensus        70 ~~~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~  149 (261)
                      +.+|.+|+.||++.+..+..+...++.++.+||++|++||++.+|++++++++||.+...+.+.++..+.+.++...+|.
T Consensus        56 ~~~y~~fl~pGll~~~~~~~~~~~~~~~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~  135 (257)
T PRK15066         56 GFSYMQFIVPGLIMMSVITNSYSNVASSFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPL  135 (257)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45799999999999999888777777888999999999999999999999999999999999888887776666666676


Q ss_pred             cccchHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Q psy17042        150 ECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFK  229 (261)
Q Consensus       150 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~  229 (261)
                      +..+ .+...                        ...++..+++...|++++...++.++...+.+....|++++||+  
T Consensus       136 ~~~~-~~~~l------------------------~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~~~~pl~flSgi--  188 (257)
T PRK15066        136 QVHH-WGIVL------------------------LTVLLTAILFSLGGLINAVFAKSFDDISIIPTFVLTPLTYLGGV--  188 (257)
T ss_pred             cHhH-HHHHH------------------------HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcch--
Confidence            6542 22222                        22222233333458899999999999999999999999999999  


Q ss_pred             CccccccccHHHHHHHHHHhhhhhhh
Q psy17042        230 NMVYPVNLAICELERNAIQLALGSFY  255 (261)
Q Consensus       230 ~~~~P~~~~P~~l~~~~~~~p~~~~~  255 (261)
                        +||.+.+|+|+|+++++.|++|+.
T Consensus       189 --~~p~~~lP~~l~~i~~~nPlt~~v  212 (257)
T PRK15066        189 --FYSISLLPPFWQGVSKLNPIVYMV  212 (257)
T ss_pred             --hccHHhChHHHHHHHHHCcHHHHH
Confidence              999999999999999999999975

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=99.78  E-value=1.4e-17  Score=146.90  Aligned_cols=156  Identities=15%  Similarity=0.182  Sum_probs=129.1

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy17042         70 DPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGV  149 (261)
Q Consensus        70 ~~~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~  149 (261)
                      +.+|.+|++||++.+..+..+ ...+.....|||+|++++++.+|.++..+.+||.+...+..+++.++.+.++ ..+|.
T Consensus        55 ~~~y~~fl~pGi~~~~~~~~~-~~~~~~~~~~r~~g~~~~l~~~p~~~~~~~l~~~l~~~~~~~~~~~i~~~~~-~~~g~  132 (253)
T TIGR03861        55 YITYEVYIVPGLCCMILLFNG-MQSSLSMVYDREMGSMRVLLTSPLPRPFLLFCKLLASALISLLQVYAFLAIA-ALVGV  132 (253)
T ss_pred             CCCHHHHHHHHHHHHHHHHHH-HHhhhHhHHhHhcCHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcC
Confidence            457999999999998887655 4456678999999999999999999999999999999999999887766555 45676


Q ss_pred             ccc-chHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Q psy17042        150 ECK-GDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCF  228 (261)
Q Consensus       150 ~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~  228 (261)
                      +.. .+++...                        ...++..+...++|+++|.++|+.++...+...+..|++++||+ 
T Consensus       133 ~~~~~~~l~~~------------------------~~~~l~~~~~~~lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi-  187 (253)
T TIGR03861       133 QPPVWGYVSVL------------------------PALVLVAFMLGALGLALSNLIRQLENFAGVMNFVIFPMFFLSSA-  187 (253)
T ss_pred             CCCchhHHHHH------------------------HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhH-
Confidence            543 2232222                        34444567778999999999999999999888999999999999 


Q ss_pred             CCcccccccc---HHHHHHHHHHhhhhhhh
Q psy17042        229 KNMVYPVNLA---ICELERNAIQLALGSFY  255 (261)
Q Consensus       229 ~~~~~P~~~~---P~~l~~~~~~~p~~~~~  255 (261)
                         +||.+.+   |+|+|+++++.|++|..
T Consensus       188 ---~~p~~~~~~~p~~l~~i~~~nPl~~~i  214 (253)
T TIGR03861       188 ---LYPLWKMQEASTWLYWICALNPFTHAV  214 (253)
T ss_pred             ---hhhhhhcccccHHHHHHHHhCcHHHHH
Confidence               9999876   89999999999999875

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=99.75  E-value=6e-16  Score=135.71  Aligned_cols=161  Identities=30%  Similarity=0.392  Sum_probs=137.3

Q ss_pred             cCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17042         67 GSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFV  146 (261)
Q Consensus        67 ~n~~~~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~  146 (261)
                      ++++.+|.+|..|+++.+.............+.+||++|+++|++.+|+++...++++.+....+..++..+.+.+..++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  159 (286)
T COG0842          80 SNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFL  159 (286)
T ss_pred             cCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHhHHhhCcHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567899999999999999888888877788888999999999999999888888898888888888888888878888


Q ss_pred             HcccccchHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHhc
Q psy17042        147 FGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVIS-AICELERNAIQLALGSFYPTLLLS  225 (261)
Q Consensus       147 ~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is-~~~~~~~~a~~~~~~~~~p~~~~s  225 (261)
                      +|....++.....                        ....++.+...++|.+++ ...++.+.+..+......|+.+++
T Consensus       160 ~g~~~~~~~~~~~------------------------~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  215 (286)
T COG0842         160 LGVPFLGSLLLLL------------------------LLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLS  215 (286)
T ss_pred             HcCCCCCcHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHc
Confidence            9977777777666                        566667778888888666 355666667778889999999999


Q ss_pred             CCCCCccccccccHHHHHHHHHHhhhhhhh
Q psy17042        226 GCFKNMVYPVNLAICELERNAIQLALGSFY  255 (261)
Q Consensus       226 G~~~~~~~P~~~~P~~l~~~~~~~p~~~~~  255 (261)
                      |.    ++|.+.+|+|+|+++++.|.+|..
T Consensus       216 g~----~~p~~~~p~~~~~i~~~~P~t~~~  241 (286)
T COG0842         216 GV----FFPLELLPAWLQGISYINPLTYAI  241 (286)
T ss_pred             cc----cCchhhhHHHHHHHHHHccHHHHH
Confidence            99    999999999999999999998864

>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A

Probab=99.74  E-value=4.1e-19  Score=159.08  Aligned_cols=218  Identities=19%  Similarity=0.327  Sum_probs=40.9

Q ss_pred             hhhh-cCCCceEEEEEccccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCCCCceeecccccCCCCCchhhHHHHHH
Q psy17042          4 KNTL-KTKKEICEVLHQECDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVI   82 (261)
Q Consensus         4 ~~l~-~g~~~~i~v~~d~s~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~n~~~~y~~~~~p~~i   82 (261)
                      +++. +++++++++++|+++......+++.+++..++.+.+...  .........|++.+.....++..++.+++.+.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (344)
T PF12698_consen   90 QDLLSSGESPNITVYINSSNPHSSQIIQNALSSLLQQLNASSEG--KSAIQSSNSPIPVESIPLSNPSSSFASYLIPFIL  167 (344)
T ss_dssp             CHCH-TT--ECCEEEESSSSHHHHHHHHHHHHHHHHHHHHCCCG--CCCCHHHT--EEEEEEEECCCHHHCHTT------
T ss_pred             ccccccCCcceEEEEeecccchhhhhhhccccccchhhhhhhhh--hhhhccccccccccccccccccccccccccccch
Confidence            3444 788999999999999888877777777655554433211  1111223356666544445555667777777444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ccccchHHHHH
Q psy17042         83 LTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFG---VECKGDLLLVI  159 (261)
Q Consensus        83 ~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g---~~~~g~~~~~~  159 (261)
                      .+. .+.+....+..+.+|||+|+.+|++.+|++++++.+||.+...++.+++.++..++   .+|   ++.. +....+
T Consensus       168 ~~~-~~~~~~~~~~~i~~ek~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~-~~~~~~  242 (344)
T PF12698_consen  168 FFI-LLIGFSFIAMSIVEEKESGTRERLLSSGVSPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG-NFLLLL  242 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHH-HHHHHHhhchhhhhHhhhhhhHhhhcccCCHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc-chHHHH
Confidence            333 34444445667899999999999999999999999999999999999988876553   555   5554 444443


Q ss_pred             HHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccH
Q psy17042        160 ILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAI  239 (261)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P  239 (261)
                                              +..+++.++.+++|.+++.+.|+.+.+..+..++.++..+.+|.    .+|.+.+|
T Consensus       243 ------------------------l~~~l~~~~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  294 (344)
T PF12698_consen  243 ------------------------LLLLLFSLAFISFGFLISSFFKNSSTAISVASIIILLLSFLSGG----FFPLSSLP  294 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------------------------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHhHHhhH
Confidence                                    67777888999999999999999999988777777777777777    89999999


Q ss_pred             HHHHHHHHHhhhhhhhc
Q psy17042        240 CELERNAIQLALGSFYP  256 (261)
Q Consensus       240 ~~l~~~~~~~p~~~~~p  256 (261)
                      ++++++.+++|..++.-
T Consensus       295 ~~~~~i~~~~P~~~~~~  311 (344)
T PF12698_consen  295 SFLQWISSFLPFYWFIQ  311 (344)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHhhHHHHHH
Confidence            99999999999988653

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=99.74  E-value=1.2e-16  Score=136.86  Aligned_cols=164  Identities=15%  Similarity=0.118  Sum_probs=129.4

Q ss_pred             CCCCceeecccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHH
Q psy17042         55 ADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCG  134 (261)
Q Consensus        55 ~~~pi~~~~~~~~n~~~~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i  134 (261)
                      ..+|++.+++. .|+..+|.++++|+++.+.+...+....  .+.++||+++    +.+|.+++++++||.+...+++.+
T Consensus         4 l~~pv~~~~~~-~~~~~~~~~~~~p~~~~~~l~~ga~~~~--~~~~~~~~~~----~~~p~~~~~~~~~k~~~~~~~~~~   76 (208)
T TIGR03062         4 VAEPVKLKHSD-YDDVPNYGTGLAPYFLSLALFVGALVLN--MIIPPLSRRA----LPKSARSWRIALAKLLPGGLIGVL   76 (208)
T ss_pred             cCCCceeceee-ccCCCCCcchhHHHHHHHHHHHHHHHHH--HHhccccccc----cccCchHHHHHHHHHHHHHHHHHH
Confidence            35899987555 4567789999999999988765444333  3345555543    588999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcccccchHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q psy17042        135 QTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLA  214 (261)
Q Consensus       135 ~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~  214 (261)
                      +..+...+..+.+|++.. +.+...                        +..++..+++.++|..++...++..++... 
T Consensus        77 ~~~~~~~i~~~~~g~~~~-~~~~~~------------------------l~~~l~~~~~~~lg~~l~~~~~~~~~~~~~-  130 (208)
T TIGR03062        77 QAIILYGVLILGLGLDPA-HPPATF------------------------GFAILTSLTFMAIIQFLVALFGNVGRFLAL-  130 (208)
T ss_pred             HHHHHHHHHHHHcCCccC-CHHHHH------------------------HHHHHHHHHHHHHHHHHHHHhCcchHHHHH-
Confidence            999988887777898864 555444                        566777888999999999999977655443 


Q ss_pred             HHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhhc
Q psy17042        215 LGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYP  256 (261)
Q Consensus       215 ~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~p  256 (261)
                       ....|.++++|.    ++|.+.+|+|+|++++++|++|..-
T Consensus       131 -~~~~~~~~~sG~----~~P~~~~P~~~~~i~~~~P~t~~~~  167 (208)
T TIGR03062       131 -VLLVLQLGSSGG----TFPIELLPAFFQAIHPFLPMTYSVN  167 (208)
T ss_pred             -HHHHHHHccCCC----ccchhhCHHHHHHhhhhCcHHHHHH
Confidence             344577778998    9999999999999999999998753

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=99.50  E-value=1.8e-12  Score=114.07  Aligned_cols=140  Identities=14%  Similarity=0.047  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHccccc-chHHHHHHHHHhhh
Q psy17042         90 AVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALV--LIFMIFVFGVECK-GDLLLVIILTILQG  166 (261)
Q Consensus        90 ~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~--~~~~~~~~g~~~~-g~~~~~~~~~~~~~  166 (261)
                      ....+..++++|||+||+|.++++|++|+++++||.++...+..+.....  .......+|.+.. .++....       
T Consensus        65 ~p~l~~~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  137 (240)
T TIGR03518        65 IPAITMRSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTF-------  137 (240)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHH-------
Confidence            34446788999999999999999999999999999999988766554422  2222334554431 1222111       


Q ss_pred             cccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccc--cHHHHHH
Q psy17042        167 LCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNL--AICELER  244 (261)
Q Consensus       167 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~--~P~~l~~  244 (261)
                                    ...+..+++..+..++|+++|+++|++..+..++......+  ..|.    .+ ...  .|++.|+
T Consensus       138 --------------~~~~~~~l~~~~~~aig~~iSsl~~~q~~a~~~~~~~~~~l--~~~~----~~-l~~~~~~~~~~~  196 (240)
T TIGR03518       138 --------------GSYIGLLLLGSVYTAIGLFASSLTENQIVAFIIAVFLCFLF--YFGF----DG-LASLLWGGSAYT  196 (240)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH--HHHH----HH-HhhhcchhHHHH
Confidence                          11245566677889999999999999988877665443332  2332    11 233  4889999


Q ss_pred             HHHHhhhhhhhcc
Q psy17042        245 NAIQLALGSFYPT  257 (261)
Q Consensus       245 ~~~~~p~~~~~p~  257 (261)
                      +.++.|..|+...
T Consensus       197 l~~~sp~~~~~~~  209 (240)
T TIGR03518       197 ISELGLSYHYESI  209 (240)
T ss_pred             HHHcCHHHHHHHH
Confidence            9999999998654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.36  E-value=2.4e-14  Score=120.63  Aligned_cols=131  Identities=22%  Similarity=0.397  Sum_probs=114.2

Q ss_pred             HHHHHHHHhChhHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHhhhcccccccc
Q psy17042         96 SALIIERMEGLLDRSWVAGV-TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVE  174 (261)
Q Consensus        96 ~~i~~Er~~gtl~~ll~~p~-~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~  174 (261)
                      .....|||+|+++|.+.+|. ++.+++++|.+...+..+++..+..+.....+|.+.+ +.....               
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~---------------  134 (210)
T PF01061_consen   71 SSISFERERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE-SFFLFL---------------  134 (210)
T ss_pred             chhhhhhhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc-cchhee---------------
Confidence            34678999999999999999 9999999999999999999999888777666687766 443333               


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhh
Q psy17042        175 CKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSF  254 (261)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~  254 (261)
                               ...++..++..++|.+++.++++.+.+..+...+..+++++||.    ++|.+.+|+|+|++.++.|++|.
T Consensus       135 ---------~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~----~~p~~~lP~~~~~i~~~~P~~~~  201 (210)
T PF01061_consen  135 ---------LILLLSILCSSGLGLLLAALFPSFRDASAISSLILLLLFFLSGV----FFPLSSLPSWLRWISYLNPLTYA  201 (210)
T ss_pred             ---------cccccccccccccccccccchhhhhhhhhhhhhcccccccceee----ecchHHChHHHHHHHHHHHHHHH
Confidence                     45555667778999999999999999999999999999999999    99999999999999999999986


Q ss_pred             h
Q psy17042        255 Y  255 (261)
Q Consensus       255 ~  255 (261)
                      +
T Consensus       202 ~  202 (210)
T PF01061_consen  202 V  202 (210)
T ss_pred             H
Confidence            5

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.28  E-value=3.3e-10  Score=106.95  Aligned_cols=125  Identities=20%  Similarity=0.187  Sum_probs=80.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---ccc
Q psy17042         75 DFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIF-VF---GVE  150 (261)
Q Consensus        75 ~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~-~~---g~~  150 (261)
                      +.+++.++.+.....+....+.++++||||+++|.++++|++|.+++.||+++..+++++|..+..+.+.+ .+   .+.
T Consensus       187 ~~~~~~ll~~~~~~~~~~~~~~sva~EKe~rtlE~LLssPvSr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~  266 (407)
T COG1668         187 VAILIFLLFFIPLSYAGQMVADSVAGEKERRTLEVLLSSPVSRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVA  266 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhccCcChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            34444444444444444355688999999999999999999999999999999999999997766554411 11   011


Q ss_pred             ccchHHHHHHHHHhhhcccccccccchhh-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Q psy17042        151 CKGDLLLVIILTILQGLCGMCFVECKGDL-LLVIILTILQGLCGMCFGFVISAICELERNAIQLAL  215 (261)
Q Consensus       151 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~  215 (261)
                      ..+......                ...+ .......+.-.+...+++.+++..+++.+++++...
T Consensus       267 ~~~~~~~~~----------------~~~~l~~~~~~~l~~~l~~~~l~a~l~~~a~~~k~aq~~~~  316 (407)
T COG1668         267 LAGTGLALL----------------PAYLLLFALSLFLLGLLLYAALAAFLGAMAGSIKEAQTLIS  316 (407)
T ss_pred             hhhhhHHhh----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence            111000000                0000 111123333345556788999999999999998765

>PF12679 ABC2_membrane_2: ABC-2 family transporter protein

Probab=99.03  E-value=8.2e-09  Score=91.17  Aligned_cols=112  Identities=21%  Similarity=0.318  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHcccccchHHHHHHH
Q psy17042         89 LAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMI-------FVFGVECKGDLLLVIIL  161 (261)
Q Consensus        89 ~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~-------~~~g~~~~g~~~~~~~~  161 (261)
                      .+...++..+++|||+||+|.++++|++|+++++||+++..+.++. ..+..+++.       ...|.+.......... 
T Consensus        81 ~~~~l~~~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  158 (277)
T PF12679_consen   81 FAIILASDLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLL-LLIALLVGYLLTLVLIAISGIPIDLSSFLLLL-  158 (277)
T ss_pred             HHHHHHHHHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccHHHHHHHH-
Confidence            4566778899999999999999999999999999999999988543 222222111       1223333222111110 


Q ss_pred             HHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q psy17042        162 TILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPT  221 (261)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~  221 (261)
                                         .......+..++..++++++|++.|+++.+...+..+.+..
T Consensus       159 -------------------~~~~~~~~~~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~  199 (277)
T PF12679_consen  159 -------------------LLFVLLLLAVLVFISLGLLISSLFRSSASAILASLGLLFLL  199 (277)
T ss_pred             -------------------HHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence                               00012222222568999999999999999988766544433

>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []

Probab=98.84  E-value=1.5e-07  Score=81.53  Aligned_cols=130  Identities=17%  Similarity=0.336  Sum_probs=91.9

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy17042         70 DPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGV  149 (261)
Q Consensus        70 ~~~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~  149 (261)
                      +.+-..-..||++.+...+.+.........+|+|+|++|.++.+|.++..+++||.+..++...+-..+..-+....+|.
T Consensus        40 ~~~~l~~~~~gllWi~~lfa~~l~~~r~f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~  119 (215)
T PF03379_consen   40 DPDLLARVAPGLLWIALLFASLLGLNRSFAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNL  119 (215)
T ss_pred             chhHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            33444567899999988887777778889999999999999999999999999999999999887777666655567787


Q ss_pred             cccchHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh---ccHHHHH-HHHHHHHHHHHHh
Q psy17042        150 ECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAIC---ELERNAI-QLALGSFYPTLLL  224 (261)
Q Consensus       150 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~---~~~~~a~-~~~~~~~~p~~~~  224 (261)
                      +.. ++..+.                        +...+...+..++|.+.++++   |+.+.-. .+..+..+|.+..
T Consensus       120 ~~~-~~~~~~------------------------~~l~lgt~gl~~igtl~aal~~~~r~~~~Ll~lL~lPl~iPvli~  173 (215)
T PF03379_consen  120 PIS-SWPLLL------------------------LSLLLGTLGLAAIGTLLAALAAGARGREILLPLLLLPLLIPVLIF  173 (215)
T ss_pred             Chh-HHHHHH------------------------HHHHHHhHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHH
Confidence            763 333332                        333344455556666655553   3333222 2455677777665

These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=98.76  E-value=3.5e-07  Score=90.77  Aligned_cols=128  Identities=13%  Similarity=0.126  Sum_probs=102.7

Q ss_pred             HhChhHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHhhhcccccccccchhhHH
Q psy17042        103 MEGLLDRSWVAGV-TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLL  181 (261)
Q Consensus       103 ~~gtl~~ll~~p~-~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (261)
                      |+..+.|-..... +...++++|.+......++..++...+.++..|.+....  .+.                     .
T Consensus       418 er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~--~f~---------------------~  474 (617)
T TIGR00955       418 ELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGAT--HFL---------------------T  474 (617)
T ss_pred             HHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHH--HHH---------------------H
Confidence            4446666666665 778999999999999998888877776666667654322  111                     1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhhcc
Q psy17042        182 VIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYPT  257 (261)
Q Consensus       182 ~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~p~  257 (261)
                      .+++.++..++..++|.++++++++...|..++.++..++++++|+    +.|.+.+|.|++|+.++.|+.|-+-.
T Consensus       475 f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~----~i~~~~ip~~~~W~~~isp~~ya~~a  546 (617)
T TIGR00955       475 FLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGF----FINSDSIPVYFKWLSYLSWFRYGNEG  546 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhc----ccChhhccHHHHHHHHcCHHHHHHHH
Confidence            1256666778889999999999999999999999999999999999    99999999999999999998886543

>TIGR01190 ccmB heme exporter protein CcmB

Probab=98.70  E-value=7.2e-07  Score=77.00  Aligned_cols=85  Identities=11%  Similarity=0.158  Sum_probs=70.8

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy17042         70 DPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGV  149 (261)
Q Consensus        70 ~~~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~  149 (261)
                      +.+-..-..|+++.....+...........+|+|+|++|.++.+|.++..+++||.+..++...+...+..-.....+|.
T Consensus        37 ~~~~l~~~apgilWva~lfa~ll~l~rlF~~d~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~  116 (211)
T TIGR01190        37 ELKLLSRIAPGIVWVGALLSSLLSLDRLFRDDFEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNL  116 (211)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            44455668999999998887777777889999999999999999999999999999999999887777666555567888


Q ss_pred             cccch
Q psy17042        150 ECKGD  154 (261)
Q Consensus       150 ~~~g~  154 (261)
                      +..+.
T Consensus       117 ~~~~~  121 (211)
T TIGR01190       117 DVPAW  121 (211)
T ss_pred             CchHH
Confidence            76544

This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.

>PLN03211 ABC transporter G-25; Provisional

Probab=98.69  E-value=6.9e-07  Score=89.34  Aligned_cols=124  Identities=10%  Similarity=0.098  Sum_probs=100.4

Q ss_pred             HhChhHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccch-HHHHHHHHHhhhcccccccccchhhH
Q psy17042        103 MEGLLDRSWVAGV-TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGD-LLLVIILTILQGLCGMCFVECKGDLL  180 (261)
Q Consensus       103 ~~gtl~~ll~~p~-~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (261)
                      |+..+.|-+.+.. +...++++|.+..+...++..++...+.++.-|.+.... ++..+                     
T Consensus       464 er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~---------------------  522 (659)
T PLN03211        464 ERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTL---------------------  522 (659)
T ss_pred             hhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHH---------------------
Confidence            3345555555554 778999999999999998888887777777777775432 22222                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhhc
Q psy17042        181 LVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYP  256 (261)
Q Consensus       181 ~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~p  256 (261)
                         ++.++..++..++|.++++++++.+.|+.++.++..|++++||+    +.+  .+|+|++|+.++.|+.|-+=
T Consensus       523 ---li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf----~i~--~ip~~~~W~~ylS~~~y~~e  589 (659)
T PLN03211        523 ---LVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGF----YVH--KLPSCMAWIKYISTTFYSYR  589 (659)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhh----hHh--hchHHHHHHHHhCHHHHHHH
Confidence               77888889999999999999999999999999999999999999    776  79999999999999887553

>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]

Probab=98.69  E-value=6.2e-07  Score=79.69  Aligned_cols=116  Identities=15%  Similarity=0.242  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHcccccchHHHHHHHHHhh
Q psy17042         89 LAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL--IF-MIFVFGVECKGDLLLVIILTILQ  165 (261)
Q Consensus        89 ~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~--~~-~~~~~g~~~~g~~~~~~~~~~~~  165 (261)
                      .+...+...+++|+|+||.+.+++.|++|++++.||.++......+...+..  .. ....++.+...+.....      
T Consensus        74 ~~~~l~~~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~------  147 (278)
T COG1277          74 LAILLGADLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRL------  147 (278)
T ss_pred             HHHHHccchhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHH------
Confidence            4556677889999999999999999999999999999999988887777766  22 23345555443332211      


Q ss_pred             hcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy17042        166 GLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLL  224 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~  224 (261)
                                    ........++.....+++.+++...|+...+...+........+.
T Consensus       148 --------------~~~~~~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  192 (278)
T COG1277         148 --------------LLFLGSSLLYGLVLLSISLLISSLFSSSSLALLVSIILLLLFIIA  192 (278)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHH
Confidence                          112267788889999999999999999988888766555544444

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.58  E-value=1.4e-06  Score=93.61  Aligned_cols=126  Identities=10%  Similarity=0.084  Sum_probs=101.0

Q ss_pred             HhChhHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccch-HHHHHHHHHhhhcccccccccchhhH
Q psy17042        103 MEGLLDRSWVAG-VTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGD-LLLVIILTILQGLCGMCFVECKGDLL  180 (261)
Q Consensus       103 ~~gtl~~ll~~p-~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (261)
                      ||..+.|-+... .+++.+.++|.++.+...++..++...+.++..|++.... ++..+                     
T Consensus       478 eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~---------------------  536 (1394)
T TIGR00956       478 ARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYL---------------------  536 (1394)
T ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHH---------------------
Confidence            344444444333 3678899999999999998888887777666667765433 22222                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhhc
Q psy17042        181 LVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYP  256 (261)
Q Consensus       181 ~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~p  256 (261)
                         +..++..++..+++.+++++++|...|..++.+...++++++|+    +.|.+.||.|++|+.++.|+.|-+=
T Consensus       537 ---l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf----~i~~~~mp~~~~W~~yisp~~yafe  605 (1394)
T TIGR00956       537 ---LILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGF----AIPRPSMLGWSKWIYYVNPLAYAFE  605 (1394)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccc----ccChhhccHHHHHHHHcCHHHHHHH
Confidence               56666777888999999999999999999999999999999999    9999999999999999999988653

>PLN03140 ABC transporter G family member; Provisional

Probab=98.53  E-value=4.2e-06  Score=90.25  Aligned_cols=125  Identities=13%  Similarity=0.079  Sum_probs=102.2

Q ss_pred             ChhHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccch-HHHHHHHHHhhhcccccccccchhhHHH
Q psy17042        105 GLLDRSWVAGV-TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGD-LLLVIILTILQGLCGMCFVECKGDLLLV  182 (261)
Q Consensus       105 gtl~~ll~~p~-~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (261)
                      ..+.|-+.+.. +.+.+.+++++..+...+++.++..++.++..|++.... +...+                       
T Consensus      1275 ~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~----------------------- 1331 (1470)
T PLN03140       1275 TVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFY----------------------- 1331 (1470)
T ss_pred             HHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH-----------------------
Confidence            34555555543 678899999999999999999988887777778765322 22222                       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhhcc
Q psy17042        183 IILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYPT  257 (261)
Q Consensus       183 ~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~p~  257 (261)
                       +..++..++..++|+++++++++...|..++.++..++.+++|+    +.|...||.|++|+.++-|++|.+=.
T Consensus      1332 -~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf----~i~~~~iP~~~~W~~~isp~~y~~~~ 1401 (1470)
T PLN03140       1332 -FISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGF----FIPRPKIPKWWVWYYWICPVAWTVYG 1401 (1470)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeee----ccChHHCchHHHHHHHcCHHHHHHhh
Confidence             55566678889999999999999999999999999999999999    99999999999999999999987543

>PLN03140 ABC transporter G family member; Provisional

Probab=98.51  E-value=4.5e-06  Score=89.98  Aligned_cols=114  Identities=11%  Similarity=0.095  Sum_probs=98.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc-hHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHH
Q psy17042        115 VTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKG-DLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCG  193 (261)
Q Consensus       115 ~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  193 (261)
                      .+++.+.+++++..+.+.++..++...+.++..|++... .++..+                        ++.++...+.
T Consensus       608 Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~------------------------l~~~l~~~~~  663 (1470)
T PLN03140        608 HPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQL------------------------LLVFLIQQMA  663 (1470)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHH------------------------HHHHHHHHHH
Confidence            467899999999999999999988888888887876643 333333                        6666677888


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhhc
Q psy17042        194 MCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYP  256 (261)
Q Consensus       194 ~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~p  256 (261)
                      .+++.++++++++...|+.++.++.+++++++|+    +.|.+.||+|++|+.++-|+.|-+-
T Consensus       664 ~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf----~i~~~~ip~w~~W~~yisp~~Ya~e  722 (1470)
T PLN03140        664 AGIFRLIASVCRTMIIANTGGALVLLLVFLLGGF----ILPKGEIPNWWEWAYWVSPLSYGFN  722 (1470)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccc----eechHhCchHHHHHHHhCHHHHHHH
Confidence            9999999999999999999999999999999999    9999999999999999999987553

>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.51  E-value=1e-05  Score=72.29  Aligned_cols=157  Identities=19%  Similarity=0.260  Sum_probs=112.6

Q ss_pred             cccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17042         65 IYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMI  144 (261)
Q Consensus        65 ~~~n~~~~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~  144 (261)
                      ....++.+|.-|+.-|+++......+...+..++ .++++    -+.-.+.++....+++.+.......+...+++.+..
T Consensus        60 l~~~~~~~~~~~l~~G~~~w~f~~~~i~~~~~s~-~~n~~----li~k~~~p~~~~~~~~~~~~~~~~~i~~iiil~~~i  134 (263)
T COG1682          60 LLRSPGLNFLAYLLAGLILWFFFSEAISEGAGSV-VANAA----LIKKINFPPLILPVARTLSRLFNFLIHLIIILIFLI  134 (263)
T ss_pred             HHhCCCcchHHHHHHHHHHHHHHHHHHHhHHHHh-hhhHH----HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344477899999999988776655544444444 33321    122346789999999999999988888876655543


Q ss_pred             HHHcccccchHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy17042        145 FVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLL  224 (261)
Q Consensus       145 ~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~  224 (261)
                       .+|.....++....                        ....+..+.+.++|+++|.++-.-+.-.++...+.-+.++.
T Consensus       135 -~~~~~~s~~~l~~~------------------------~~l~~l~l~~~g~~l~~a~l~v~fRD~~~i~~~v~~~~f~~  189 (263)
T COG1682         135 -ILGVEPSWHWLLLL------------------------PALLLLILFSVGLGLILASLGVRFRDLGQILGVVLQLLFFL  189 (263)
T ss_pred             -HHcCCCcHHHHHHH------------------------HHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHHHHHHHh
Confidence             45544444444443                        44444556667888888888776667777766788889999


Q ss_pred             cCCCCCccccccccHHHHHHHHHHhhhhhhh
Q psy17042        225 SGCFKNMVYPVNLAICELERNAIQLALGSFY  255 (261)
Q Consensus       225 sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~  255 (261)
                      |++    +||.+..|+..|+..++.|++|..
T Consensus       190 sPI----i~~~~~~p~~~~~~~~~NP~~~ii  216 (263)
T COG1682         190 SPI----IYPVSNLPEQLRELVLLNPLTHII  216 (263)
T ss_pred             Cce----eeehhhccHHHHHHHHHCcHHHHH
Confidence            999    999999999999999999999975

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.40  E-value=7.5e-06  Score=88.11  Aligned_cols=113  Identities=12%  Similarity=0.026  Sum_probs=94.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccch--------HHHHHHHHHhhhcccccccccchhhHHHHHHHH
Q psy17042        116 TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGD--------LLLVIILTILQGLCGMCFVECKGDLLLVIILTI  187 (261)
Q Consensus       116 ~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  187 (261)
                      +...++++|.+..+...++..++...+.++..|++....        .....                        +..+
T Consensus      1169 ~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~------------------------~~~~ 1224 (1394)
T TIGR00956      1169 SWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFW------------------------LLST 1224 (1394)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHH------------------------HHHH
Confidence            567899999999999999888887777666667654321        22222                        5666


Q ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhhc
Q psy17042        188 LQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYP  256 (261)
Q Consensus       188 l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~p  256 (261)
                      ++.++..++|.++++++++...|..+..++..++++++|+    +.|.+.+|.|++|+.++-|++|.+=
T Consensus      1225 ~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~----~~~~~~ip~~~~w~~~~sp~~y~~~ 1289 (1394)
T TIGR00956      1225 MFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGV----LAPPSRMPGFWIFMYRCSPFTYLVQ 1289 (1394)
T ss_pred             HHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccc----cCChhHCcHHHhHHHhcCHHHHHHH
Confidence            6777888999999999999999999999999999999999    9999999999999999999988764

>PF12730 ABC2_membrane_4: ABC-2 family transporter protein

Probab=98.25  E-value=0.00022  Score=59.64  Aligned_cols=110  Identities=16%  Similarity=0.239  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcc-cccch-HHHHHHHHH
Q psy17042         89 LAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMI---FVFGV-ECKGD-LLLVIILTI  163 (261)
Q Consensus        89 ~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~---~~~g~-~~~g~-~~~~~~~~~  163 (261)
                      .....++....+|+++|+.+.++++|.+|.+++.+|.+...+...+..++..+...   ..++. +.+.+ .....    
T Consensus        61 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  136 (232)
T PF12730_consen   61 LIIILAALLFSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYL----  136 (232)
T ss_pred             HHHHHHHHHHHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHH----
Confidence            34445677889999999999999999999999999999999988777666443332   22231 11111 11111    


Q ss_pred             hhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q psy17042        164 LQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFY  219 (261)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~  219 (261)
                                      ....+..++..+....+ .+++.+.||.-.+..+......
T Consensus       137 ----------------~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~i~~~~~~~~  175 (232)
T PF12730_consen  137 ----------------ISYLLLFLLLSLFISLL-LFISSLFRNSIVAIIISILLFL  175 (232)
T ss_pred             ----------------HHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHH
Confidence                            11123444444455555 7889999987666555444443

>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=2.4e-05  Score=66.63  Aligned_cols=83  Identities=11%  Similarity=0.264  Sum_probs=68.3

Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy17042         69 NDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFG  148 (261)
Q Consensus        69 ~~~~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g  148 (261)
                      |+.+-..-+.||++.......++..-.....+|+|+|++|.++.+|.+...++.||.++++....+-.++..-+....+|
T Consensus        42 pd~~~la~iaPgilWia~lLA~lL~l~rlF~~d~edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll~  121 (221)
T COG2386          42 PDPQLLARIAPGILWIAALLASLLGLERLFRDDYEDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLLN  121 (221)
T ss_pred             CchhHHHHhcchHHHHHHHHHHHHhHHHHHHHhhhcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence            46666777899999888877777666778899999999999999999999999999999999887766665555555677


Q ss_pred             ccc
Q psy17042        149 VEC  151 (261)
Q Consensus       149 ~~~  151 (261)
                      ++.
T Consensus       122 ~~~  124 (221)
T COG2386         122 MDV  124 (221)
T ss_pred             CCH
Confidence            665

>KOG0065|consensus

Probab=98.25  E-value=3.9e-05  Score=80.33  Aligned_cols=117  Identities=12%  Similarity=0.098  Sum_probs=100.6

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc-hHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHH
Q psy17042        114 GVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKG-DLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLC  192 (261)
Q Consensus       114 p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  192 (261)
                      =.++|...++.++..+...++.+++..++.++..|+...+ .++..+                        ++.++...+
T Consensus       529 fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~f------------------------L~lf~~~~~  584 (1391)
T KOG0065|consen  529 FYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQF------------------------LFLFLCQFC  584 (1391)
T ss_pred             ccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHH------------------------HHHHHHHHH
Confidence            4578999999999999999998888888888888886654 344444                        677777788


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhhccc
Q psy17042        193 GMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYPTL  258 (261)
Q Consensus       193 ~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~p~~  258 (261)
                      +.++--++++++|+...|+.++.+..+..++.+|+    ..|...||+|++|++++.|+.+-+-.+
T Consensus       585 ~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf----~Ip~~~m~~W~~Wi~yinPl~Y~fesl  646 (1391)
T KOG0065|consen  585 MSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGF----VIPKKDMPPWFRWIAYINPLMYAFESL  646 (1391)
T ss_pred             HHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcce----eeeccccchHHHHHHHHCHHHHHHHHH
Confidence            88888999999999999999999999999999999    999999999999999999998865443

>KOG0061|consensus

Probab=98.24  E-value=5.6e-05  Score=75.11  Aligned_cols=123  Identities=15%  Similarity=0.180  Sum_probs=100.0

Q ss_pred             HHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHhhhcccccccccch
Q psy17042         98 LIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKG  177 (261)
Q Consensus        98 i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  177 (261)
                      +.+|+.+|..        +.+.++++|.+..+...++..++...+.++..|.+.........                  
T Consensus       419 f~rE~~~~~Y--------~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~------------------  472 (613)
T KOG0061|consen  419 FLRETSSGLY--------RLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYF------------------  472 (613)
T ss_pred             HHHHHhcCch--------hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHH------------------
Confidence            4566666654        46788999999999999988888888877777775543222222                  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhh
Q psy17042        178 DLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFY  255 (261)
Q Consensus       178 ~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~  255 (261)
                           .+..++..++..++|+++++..+|...+..+...+..+++++||+    +.+.+.+|.|++|+.++....|-+
T Consensus       473 -----~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~----fi~~~~ip~~~~w~~~~S~~ry~~  541 (613)
T KOG0061|consen  473 -----LLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGF----FINFDSIPKYFRWISYLSYFRYAF  541 (613)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhh----hcCcccccHHHHHHHHHhHHHHHH
Confidence                 267777788899999999999999999999999999999999999    999999999999998887776654

>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional

Probab=97.98  E-value=0.00056  Score=61.13  Aligned_cols=63  Identities=21%  Similarity=0.138  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhh
Q psy17042        189 QGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFY  255 (261)
Q Consensus       189 ~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~  255 (261)
                      ..+...++|+++|.+..--++...+......++++.||+    +||.+.+|++.+++-++.|++|+.
T Consensus       158 ~~l~~~glglils~l~v~~rDi~~i~~~~l~~lf~~SpI----~y~~~~vp~~~~~il~~NPl~~~i  220 (264)
T PRK15176        158 AWLLGLSFGYFCDALSERFPLVYKAVPVMLRPMFLISAV----FYTANELPYSLLSIFSWNPLLHAN  220 (264)
T ss_pred             HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhH----hhhHHhCcHHHHHHHHHCcHHHHH
Confidence            444556777777776555555555555677788999999    999999999999999999999874

>PF06182 ABC2_membrane_6: ABC-2 family transporter protein; InterPro: IPR010390 This family consists of a number of hypothetical bacterial proteins of unknown function

Probab=97.63  E-value=0.0029  Score=54.91  Aligned_cols=127  Identities=18%  Similarity=0.163  Sum_probs=72.6

Q ss_pred             HHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcccccchHHHHHHHHHhhhccccccc
Q psy17042         95 SSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVM-CGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFV  173 (261)
Q Consensus        95 ~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~-~i~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~  173 (261)
                      ...+.++-++|.+|+.+..|++.......+-+....+. ++.....+.......+++..  .....              
T Consensus        51 ~~~i~~~I~~G~ld~~LlrPv~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~i~~~--~~~~~--------------  114 (229)
T PF06182_consen   51 IWEISEDIRTGELDQYLLRPVNYLFYLLFRNLGPSSLGFLIVGIILLIYALIQLGIPWS--PLNIL--------------  114 (229)
T ss_pred             HHHHhhhhcCCceeeehhcCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCcc--HHHHH--------------
Confidence            34678888999999999999999877777666654333 33333333333333444442  22221              


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHH-h
Q psy17042        174 ECKGDLLLVIILTILQGLCGMCFGFVISA---ICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQ-L  249 (261)
Q Consensus       174 ~~~~~~~~~~l~~~l~~~~~~~lg~~is~---~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~-~  249 (261)
                             ..++...+..+...++...++.   +..+.+....+      ..-+++|.    .+|++-.|+|+|++... +
T Consensus       115 -------~~~~~l~~g~li~~~i~~~~~~laFw~~~~~~~~~i------~~~l~sg~----~~Pl~~fp~~~~~il~~~l  177 (229)
T PF06182_consen  115 -------LFILSLLLGFLINFSIFFIIGLLAFWFTESWGLSYI------FYSLLSGA----IYPLSIFPGWIQFILTFIL  177 (229)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH------HHHHHHHH----HccHHHhHHHHHHHHHHHh
Confidence                   0012222222223333333333   33333333221      22337888    99999999999999988 8


Q ss_pred             hhhhh
Q psy17042        250 ALGSF  254 (261)
Q Consensus       250 p~~~~  254 (261)
                      |....
T Consensus       178 Pf~~i  182 (229)
T PF06182_consen  178 PFAYI  182 (229)
T ss_pred             hHHHH
Confidence            77653

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=97.50  E-value=0.007  Score=67.63  Aligned_cols=121  Identities=14%  Similarity=0.189  Sum_probs=88.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Q psy17042         74 TDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKG  153 (261)
Q Consensus        74 ~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g  153 (261)
                      .....|.++++..+.. .......+..|||++.-|.+...+++.+...++..+.+++..++..+++.++.. ...+-...
T Consensus       651 ~~~~~pl~~~la~~~~-~~~lv~~iV~EKE~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il~-~~~~~~~s  728 (2272)
T TIGR01257       651 LNRCFPIFMVLAWIYS-VSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIM-HGRILHYS  728 (2272)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCceeecC
Confidence            3567787777666544 444567789999999999999999999999999988888877776655433221 11121223


Q ss_pred             hHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy17042        154 DLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYP  220 (261)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p  220 (261)
                      ++..++                        +..++|.++.+++++++|.+.++.+.|...+.++.+.
T Consensus       729 ~~~~lf------------------------l~~~~y~~s~I~~~fliS~fFska~~A~~~~~li~f~  771 (2272)
T TIGR01257       729 DPFILF------------------------LFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYFT  771 (2272)
T ss_pred             ChHHHH------------------------HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            343343                        7888899999999999999999999888776554443

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.47  E-value=0.007  Score=52.55  Aligned_cols=107  Identities=17%  Similarity=0.229  Sum_probs=74.4

Q ss_pred             HHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcccccchHHHHHHHHHhhhccccc
Q psy17042         95 SSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMI---FVFGVECKGDLLLVIILTILQGLCGMC  171 (261)
Q Consensus        95 ~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~---~~~g~~~~g~~~~~~~~~~~~~~~~~~  171 (261)
                      +....-|+++|.+|+++..|++|+++.++|....++...+..++......   ..+|.+..-....              
T Consensus        72 ~l~l~~Ehk~n~W~~ll~lPv~r~~~YlsK~~~vf~L~~l~~li~~~~i~~~gv~~g~~~s~~~~~--------------  137 (239)
T COG4200          72 ALVLSVEHKSNMWKHLLLLPVARWKVYLSKVFWVFILVALTSLILFISIWTVGVLYGGVKSFELAA--------------  137 (239)
T ss_pred             HHHHHHHhcCCCchhhheeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHH--------------
Confidence            33447899999999999999999999999999998888777666544321   2334333111111              


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy17042        172 FVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLL  224 (261)
Q Consensus       172 ~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~  224 (261)
                             .+.......+.++-..++-..++...+|...+..++.+.  |..+.
T Consensus       138 -------~~~~~~~gll~alpl~~lQ~wLsm~fknf~~al~igI~l--~a~fv  181 (239)
T COG4200         138 -------AFTLLILGLLLALPLVALQFWLSMRFKNFAVALVIGIFL--PALFV  181 (239)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhH--HHHHH
Confidence                   111224555566667789999999999999999887666  55544

>KOG0065|consensus

Probab=97.38  E-value=0.00066  Score=71.47  Aligned_cols=115  Identities=13%  Similarity=0.076  Sum_probs=94.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccch-HHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHH
Q psy17042        116 TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGD-LLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGM  194 (261)
Q Consensus       116 ~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  194 (261)
                      +...++++..+......++++.+..+..++--|+....+ ....+                        +..+++.+.+.
T Consensus      1195 s~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~------------------------~~~~~f~lYf~ 1250 (1391)
T KOG0065|consen 1195 SWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFL------------------------LFMFIFFLYFT 1250 (1391)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHH------------------------HHHHHHHHHHH
Confidence            566789999999999999999987665544445544332 22222                        66777888899


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhhccc
Q psy17042        195 CFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYPTL  258 (261)
Q Consensus       195 ~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~p~~  258 (261)
                      .+|+++.++++|.+.|..+..+++.....++|+    +-|...+|.|+.|.-++-|++|++=.+
T Consensus      1251 ~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~----l~p~~~iP~fW~wmy~lsP~ty~l~gl 1310 (1391)
T KOG0065|consen 1251 TLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGF----LQPRSLIPKFWIWMYYLSPVTYTLEGL 1310 (1391)
T ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHhccc----ccccccccceeeeeeecCcHHHHHHHH
Confidence            999999999999999999988888888899999    999999999999999999999987543

>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family

Probab=97.27  E-value=0.039  Score=48.55  Aligned_cols=105  Identities=12%  Similarity=0.119  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccc-cchHHHHHHHHHhhh
Q psy17042         90 AVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFG--VEC-KGDLLLVIILTILQG  166 (261)
Q Consensus        90 ~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g--~~~-~g~~~~~~~~~~~~~  166 (261)
                      ....++....+|+++|+.+.+++.|+++.++.++|++.......++..+.+......++  .+. .-+....+       
T Consensus        60 i~i~~~~~~~~E~~~~~~k~ll~~p~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l-------  132 (248)
T TIGR03733        60 IGIVCGMVVEQEESAGNFKNLLSTTKSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFL-------  132 (248)
T ss_pred             HHHHHHHHHHHHHHhChHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHH-------
Confidence            34445677789999999999999999999999999999888887766644222211111  111 11111111       


Q ss_pred             cccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q psy17042        167 LCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALG  216 (261)
Q Consensus       167 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~  216 (261)
                                    ...+..++..+....+++.++...++. .+..++..
T Consensus       133 --------------~~~~~l~~~sl~~~~l~l~ls~~~g~~-~si~ig~~  167 (248)
T TIGR03733       133 --------------IAALLLIIGSLFLYIIHLFVSFAFGMG-ASIGIGIV  167 (248)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHHHHHhCCc-hhHHHHHH
Confidence                          112455666777788899999888864 34444433

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.

>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised

Probab=97.26  E-value=0.12  Score=48.56  Aligned_cols=111  Identities=11%  Similarity=0.126  Sum_probs=65.4

Q ss_pred             hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc-----chHHHHHHHHHhhhcccccccccchhhHHHHHHH
Q psy17042        112 VAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK-----GDLLLVIILTILQGLCGMCFVECKGDLLLVIILT  186 (261)
Q Consensus       112 ~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  186 (261)
                      ..++++.++++-|++...+..++.++....+. ..|++++.     +++....                        +..
T Consensus       236 ~~~l~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~W------------------------m~~  290 (382)
T PF12051_consen  236 RRKLKPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYW------------------------MFS  290 (382)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHH------------------------HHH
Confidence            45678999999999999999988888776666 67888873     2232222                        444


Q ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhh
Q psy17042        187 ILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFY  255 (261)
Q Consensus       187 ~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~  255 (261)
                      ++++.+.-...-.+.++...+-      ..+++....+.++ +++++|++..|.+-|+ .+.+|+++.+
T Consensus       291 ~l~m~a~g~~~e~~~~~i~~~~------~~~~ll~wvi~nv-~~~~~P~el~p~fyr~-gya~P~~n~~  351 (382)
T PF12051_consen  291 WLYMSAVGLANENVISIIGPPF------MPFWLLFWVILNV-SSTFYPLELSPGFYRY-GYAMPMHNIY  351 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHccch------HHHHHHHHHHHhc-ccccCChhhCccHHHH-hhhhhHHHHH
Confidence            4443332222222222222111      1122222233333 4558999999998885 5555988754

It is found in bacterial and eukaryotic proteins.

>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=97.14  E-value=0.075  Score=46.85  Aligned_cols=141  Identities=14%  Similarity=0.112  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHhChhHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccccchHHHHHHHHHhh
Q psy17042         89 LAVALTSSALIIERMEGLLDRSWVAGVTP-LEILFSHVITQFVVMCGQTALVLIFMIFVFG--VECKGDLLLVIILTILQ  165 (261)
Q Consensus        89 ~~~~~~~~~i~~Er~~gtl~~ll~~p~~~-~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g--~~~~g~~~~~~~~~~~~  165 (261)
                      ....-+..-+.+|-++|.+..-+..|++. ++-+..++.-...+++.-...++++-....+  .+..+ ...+..     
T Consensus        75 lt~~~~~~ef~~eV~~G~l~~~LLrPld~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~l~-~~~l~~-----  148 (268)
T COG4587          75 LTTVWSIWEFEKEVREGELSPRLLRPLDYLFHELAAHLGERASRGLPFLLVLLLIFALLYGAILQFLS-PWTLYL-----  148 (268)
T ss_pred             HHHHHHHHHHHHHHHcCeecHHhcCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcCC-HHHHHH-----
Confidence            33445556688999999999889999865 3445555554444433333332222222223  22222 222220     


Q ss_pred             hcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHH
Q psy17042        166 GLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERN  245 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~  245 (261)
                                     .++.+.+.+ ...-.+-..+++++=-.+.++.+......-..+.||.    ..|++..|+|+|.+
T Consensus       149 ---------------~~l~la~~~-~~~F~i~f~~~~~aFwt~~as~l~~~~~~l~~f~sG~----l~PL~~fP~~v~~i  208 (268)
T COG4587         149 ---------------FVLALALLF-LLRFLIQFTFGLFAFWTERASSLGKFWWLLYAFLSGS----LAPLAFFPDWVRAI  208 (268)
T ss_pred             ---------------HHHHHHHHH-HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhccc----cchHHhChHHHHHH
Confidence                           000111111 1112233344444333345666666666777888999    99999999999999


Q ss_pred             HHHhhhhhhh
Q psy17042        246 AIQLALGSFY  255 (261)
Q Consensus       246 ~~~~p~~~~~  255 (261)
                      ....|..+.+
T Consensus       209 l~ftPFpy~~  218 (268)
T COG4587         209 LAFTPFPYLL  218 (268)
T ss_pred             HHhCCchhhh
Confidence            9999987764

>PF13346 ABC2_membrane_5: ABC-2 family transporter protein

Probab=96.47  E-value=0.42  Score=39.89  Aligned_cols=48  Identities=13%  Similarity=0.126  Sum_probs=40.3

Q ss_pred             HHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17042         96 SALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFM  143 (261)
Q Consensus        96 ~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~  143 (261)
                      .....|++++..+-..+.|++|.+++.+|.+...+...+..++..+..
T Consensus        54 ~~~~~d~~~~~~~~~~slPvsr~~iV~akyl~~~i~~~~~~l~~~i~~  101 (206)
T PF13346_consen   54 SSFSYDEKSKWNKYLNSLPVSRKEIVLAKYLFSLIIILIGSLISLIIA  101 (206)
T ss_pred             HHHHHHHhcChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446678888888888999999999999999999999988887765544

>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family

Probab=96.43  E-value=0.26  Score=43.27  Aligned_cols=49  Identities=4%  Similarity=-0.003  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy17042         92 ALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL  140 (261)
Q Consensus        92 ~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~  140 (261)
                      ..++....+|+++|.++.+++.|+++.++.++|.+.......+...+.+
T Consensus        57 ii~~~~~~~E~~~~~~k~lls~pvs~~~~~~aK~l~~~~~~~~s~~i~~  105 (241)
T TIGR03732        57 LICALLHKKEKKASNYRAILSLPVDLKKVWIAKILVIAIYLLISCIILF  105 (241)
T ss_pred             HHHHHHHHHHHhccCcceEeecCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666788888999999999999999999999998888777766654

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=96.15  E-value=0.38  Score=54.41  Aligned_cols=94  Identities=17%  Similarity=0.234  Sum_probs=71.0

Q ss_pred             HHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc---cchHHHHHHHHHhhhcccccc
Q psy17042         96 SALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVEC---KGDLLLVIILTILQGLCGMCF  172 (261)
Q Consensus        96 ~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~---~g~~~~~~~~~~~~~~~~~~~  172 (261)
                      .-+.+||+.+.-...+.+++++..+=++..+...+..++.+++++++. ..|+.+-   ..++..++             
T Consensus      1699 ~~~V~ER~skaK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~-~~f~~~~~~~~~~l~~~~------------- 1764 (2272)
T TIGR01257      1699 LYLIQERVNKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIF-IGFQKKAYTSPENLPALV------------- 1764 (2272)
T ss_pred             eeeehHHhhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhChhhhcCcchHHHHH-------------
Confidence            346799999998888999999999999999999999888877765543 4555332   12333333             


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q psy17042        173 VECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLA  214 (261)
Q Consensus       173 ~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~  214 (261)
                                 ++.++|.++.+-+..++|.+.++...|....
T Consensus      1765 -----------lll~lyG~a~ip~tYl~SflF~~~~~A~~~~ 1795 (2272)
T TIGR01257      1765 -----------ALLMLYGWAVIPMMYPASFLFDVPSTAYVAL 1795 (2272)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHhhCCchhHHHHH
Confidence                       6777788888888899999999888776543

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG1511 Predicted membrane protein [Function unknown]

Probab=96.14  E-value=0.089  Score=54.03  Aligned_cols=161  Identities=19%  Similarity=0.205  Sum_probs=100.0

Q ss_pred             CCCCceeecccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHH
Q psy17042         55 ADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCG  134 (261)
Q Consensus        55 ~~~pi~~~~~~~~n~~~~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i  134 (261)
                      ...|+...+...+ +-.+|..-+.|...........  .....+..++ .     ....+.+.....++|.+....+...
T Consensus       564 ia~p~~~~~~~~~-~v~~~g~~~ap~~~~l~l~vg~--l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~i~~~~~  634 (780)
T COG1511         564 IANPVELKEKDID-PVPNYGSGLAPFYTALALWVGA--LLTSLLTTDV-D-----LSDGILNGRVYFFGKNLVFITLGLI  634 (780)
T ss_pred             hcCchhccccccc-cccccCccccHHHHHHHHHHHH--HHHHHHHhcc-c-----ccccccchHHHHHHhhhHHHHHHHH
Confidence            3467776655443 3556777778877777765544  3333344444 2     2334566778899999999999999


Q ss_pred             HHHHHHHHHHHHHcccccchHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q psy17042        135 QTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLA  214 (261)
Q Consensus       135 ~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~  214 (261)
                      +..+...-.....|+.....+...                         ...+...+++..+-..+...+.+...+..+.
T Consensus       635 q~~i~~~~~~~~l~~~~~~~~~~~-------------------------~~~i~~s~~f~~ii~~lv~~~g~~g~~i~iv  689 (780)
T COG1511         635 QSLIVTLGLVLLLGVEVKSPLLLV-------------------------LFAIFSSVAFMIIIYLLVSLFGNPGKFIAIV  689 (780)
T ss_pred             HHHHHHhcCeEEEEeccCchhHHH-------------------------HHHHHHHHHHHHHHHHHHHHhCcchHHHHHH
Confidence            996655443445566555444333                         3334444444455555555555555555443


Q ss_pred             HHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhh
Q psy17042        215 LGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFY  255 (261)
Q Consensus       215 ~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~  255 (261)
                        +.......+|    |.||++..|.+.|.+...+|++|.+
T Consensus       690 --llvlq~~~~~----G~~pi~~~~~~~~~l~~~lp~ty~v  724 (780)
T COG1511         690 --LLVLQIAGSG----GTFPIQLSPSFFQILHPALPLTYAV  724 (780)
T ss_pred             --HHHHHHhccc----cccchhccHHHHHHHHHhccHHHHH
Confidence              2222333344    4899999999999999999999875

>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]

Probab=96.03  E-value=0.43  Score=45.39  Aligned_cols=125  Identities=14%  Similarity=0.071  Sum_probs=72.2

Q ss_pred             HHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---cccchHHHHHHHHHhhhcccccccc
Q psy17042         98 LIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGV---ECKGDLLLVIILTILQGLCGMCFVE  174 (261)
Q Consensus        98 i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~---~~~g~~~~~~~~~~~~~~~~~~~~~  174 (261)
                      +.+|.+++..|.+++.|++|++.+.+..............+.+.-...-++.   ...++...++    .-|        
T Consensus       371 l~geEr~nr~eal~a~~vsR~~vl~syl~~all~~~l~tllAl~ga~L~~~~~~~~v~~s~~~~v----~sg--------  438 (536)
T COG3559         371 LHGEERGNRAEALLAGAVSRTHVLASYLAMALLGSALATLLALVGAGLAYGMTVGDVGGSLPTVV----GSG--------  438 (536)
T ss_pred             HhhHhhcchHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCccHHHHH----HHh--------
Confidence            3466666778999999999999999988776666655554443322233332   2234444443    001        


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhh
Q psy17042        175 CKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSF  254 (261)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~  254 (261)
                               +....-.....++.+.+..+++....-..+-......+..++|        +-++|+|+..   .-|++|.
T Consensus       439 ---------l~~lvav~f~l~ia~ll~GLaPr~t~laWlyl~~~~fvtyLg~--------Llslpewl~n---lSp~~hi  498 (536)
T COG3559         439 ---------LVQLVAVWFLLAIAVLLFGLAPRFTPLAWLYLIVGFFVTYLGG--------LLSLPEWLLN---LSPFAHI  498 (536)
T ss_pred             ---------HHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHH--------hcccHHHHhc---CCccccC
Confidence                     2222233344566667777788776666654444444444444        4458888774   3455553

>KOG0059|consensus

Probab=87.82  E-value=7.1  Score=40.87  Aligned_cols=96  Identities=20%  Similarity=0.351  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHhhhccccccc
Q psy17042         94 TSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFV  173 (261)
Q Consensus        94 ~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~  173 (261)
                      .....+.||+.+.-.....++++++.+-++..+...+..++.......+. ..||.....+.....              
T Consensus       315 ~~~~li~e~~~~~~~~~~i~G~~~~~yw~~~~~~d~~~~~l~~~~~~~~~-~~f~~~~~~~~~~~~--------------  379 (885)
T KOG0059|consen  315 FLLSLILERQQRLRHQQLIAGLSPSTYWLFALVWDLLLYLLILLILLIFV-LIFGFFAGNNTVIIL--------------  379 (885)
T ss_pred             HHhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-heeecccccchHHHH--------------
Confidence            34567899999988888999999999999999999998887777665544 355533344444444              


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q psy17042        174 ECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLA  214 (261)
Q Consensus       174 ~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~  214 (261)
                                +...++....+.+....+...+.++.+....
T Consensus       380 ----------~~~~l~~~s~i~l~y~~s~~f~~~~~~~v~~  410 (885)
T KOG0059|consen  380 ----------LLLLLYIRSAIPLTYILSFIFSKESTASVIL  410 (885)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHhcCCcCceeeh
Confidence                      6777778888899999999999888877653

>PF09847 DUF2074: Predicted permease (DUF2074); InterPro: IPR018646 This family has no known function

Probab=84.77  E-value=29  Score=33.50  Aligned_cols=46  Identities=13%  Similarity=0.155  Sum_probs=34.0

Q ss_pred             HHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17042         98 LIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIF  145 (261)
Q Consensus        98 i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~  145 (261)
                      ...|+|.  ++-+++-|+++.+++.+|++...++...-......++..
T Consensus       314 l~~E~~~--~~~l~sLPi~~~~~v~sKil~~~~i~~~l~~~i~i~~~~  359 (449)
T PF09847_consen  314 LKIEGEG--FEFLRSLPIKKREFVRSKILIPSIIPSALSLIIVIVSSI  359 (449)
T ss_pred             HHHhhhc--chhHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455544  688888999999999999999998887655554444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	261
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 24/214 (11%), Positives = 57/214 (26%), Gaps = 74/214 (34%)

Query: 18  HQECDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFV 77
           H   D + G       Q  Y+D           N    D+     + I    +      +
Sbjct: 4   HHHMDFETGEH-----QYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEE--IDHII 55

Query: 78  -APGVILTIVFFLAVALTSSALIIER-MEGLL--DRSWVAG----------------VTP 117
            +   +   +      L+    ++++ +E +L  +  ++                  +  
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 118 LEILFS--------HVI-----------------TQFVV---M--CGQTALVL------- 140
            + L++        +V                   + V+   +   G+T + L       
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 141 IFMIFVFGV------ECKGDLLLVIILTILQGLC 168
           +     F +       C        +L +LQ L 
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPET---VLEMLQKLL 206

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 47/383 (12%), Positives = 110/383 (28%), Gaps = 134/383 (34%)

Query: 4   KNTLKTKKEICEVLHQECDQQ-----IGLMLNRDLQLSYRDFAQDLLST----------- 47
           K+ L +K+EI  ++  +            +L++  ++  + F +++L             
Sbjct: 43  KSIL-SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM-VQKFVEEVLRINYKFLMSPIKT 100

Query: 48  -CDQNPKIADIPIQFKEPIYGSNDPSFTDFV------------------APGVI------ 82
              Q   +  + I+ ++ +Y  N       V                  A  V+      
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160

Query: 83  -----LTI---------------VFFLAVALTSSA-LIIERMEGL---LDRSWVAGV--- 115
                + +               +F+L +   +S   ++E ++ L   +D +W +     
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 116 ----TPLEILFSHVITQFVVMCGQTALVLIF-------MIFVFGVECKGDLLLVI----- 159
                 +  + + +         +  L L+            F + CK   +L+      
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWNAFNLSCK---ILLTTRFKQ 276

Query: 160 ILTILQGL---------CGMCFVECKG-DLLLVIILTILQGL----CGMCFGFVISAICE 205
           +   L              M     +   LLL  +    Q L            +S I E
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-TNPRRLSIIAE 335

Query: 206 LERN------------------AIQLALGSFYPTLLLSGCFKNM-VYPVNLAI------- 239
             R+                   I+ +L    P       F  + V+P +  I       
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSL 394

Query: 240 --CELERNAIQLALGSFYPTLLL 260
              ++ ++ + + +   +   L+
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLV 417

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
3cni_A	156	Putative ABC type-2 transporter; structural genomi	97.33

>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}

Probab=97.33  E-value=0.00011  Score=58.95  Aligned_cols=82  Identities=12%  Similarity=0.182  Sum_probs=52.0

Q ss_pred             hhhhhcCCCceEEEE--Eccc---cchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCCCCceeecccccCCCCCchhhH
Q psy17042          3 KKNTLKTKKEICEVL--HQEC---DQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFV   77 (261)
Q Consensus         3 ~~~l~~g~~~~i~v~--~d~s---~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~n~~~~y~~~~   77 (261)
                      +|++.+|+++++++|  +|++   +...++.+.++++.+.....+..... +..++....|++++.+.+.+++. |.+ +
T Consensus        67 s~~l~~g~~~~i~v~~~~d~~~~~~~~~~~~~~~y~~~i~~~~~~~~~~~-~~~~~~~~~Pi~~~~~~~~~~~~-~~~-~  143 (156)
T 3cni_A           67 SQSLESGEKARLEIVWYLRGTGLSEAVSTGTISSLIESLKVQLASFLLND-PKKAQLLFDPLEIVQHTYLRGSL-FKN-H  143 (156)
T ss_dssp             HHHHHHTCCEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHTTGGGGSSC-STTSGGGTCCEEEEEEEEETTEE-ETT-C
T ss_pred             HHHHhCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHhCCeeeeEEEEEcCce-ecc-C
Confidence            478899999999997  8888   55555555555544422211111111 33344456899998877765433 689 9


Q ss_pred             HHHHHHHHHH
Q psy17042         78 APGVILTIVF   87 (261)
Q Consensus        78 ~p~~i~~~~~   87 (261)
                      .|++++.+++
T Consensus       144 ~p~~i~~~~~  153 (156)
T 3cni_A          144 SPEAIMNVFY  153 (156)
T ss_dssp             CHHHHHHHHT
T ss_pred             CHHHHHHHHh
Confidence            9998876654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00