Psyllid ID: psy17215

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
LHFCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHKKQGKGKMSRRRTNCQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLEK
Secondary Structure (PSIPRED)
cEEEEEEEcccEEEEEEEEEEEcccccccccEEEEEEcccccccEEEEEEHHHcHHHHccccccccccccccccEEcccccccccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEEEEEEcccccccccEEEEEEcccccccEEEEEEcHHHHHHcccccccccccccccEEEccccccccccccccEEEEEccccccccccccccccHcccccccccccccccccccccHHHHHccccccccEEEEccccccccccccccccEEEEEEccc
Coil and Loop (DISEMBL)
lhfcegqsygkkfELTYIslsfcpksikpdslaiyksqdfgkswqplqfySSQCKKlygrtatgvisrgneqealctdrhkkqgkgkmsrrrtncqevkvnsvcglesperycdtsgachvcdagsprgrfpaeyltdlnnpsnvtcwrseAQTSvnslsaspdnvTLTLSLEK
Flexible Loop (DISEMBL)
lhfcegqsygkKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGvisrgneqealctdrhkkqgkgkmsrrrtncqevkvnsvcglespeRYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQtsvnslsaspdnvtltlslek
Low Complexity Region (SEG)
LHFCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHKKQGKGKMSRRRTNCQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLEK
Disordered region (IsUnstruct)
******QSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS******************************VKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCW**************************
Disordered Region (DISOPRED)
LHFCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTAT**********ALCT*R**********RRRTNCQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLE*
Disordered Region (DISEMBL)
LHFCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEAL*****************TNCQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLEK
Disordered Region (DISPRO)
*HFCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHKKQGKGKMSRRRTNCQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLEK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LHFCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHKKQGKGKMSRRRTNCQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
Q24568	793	Netrin-B OS=Drosophila me	yes	N/A	0.385	0.084	0.649	1e-23
Q90922	606	Netrin-1 OS=Gallus gallus	yes	N/A	0.408	0.117	0.589	1e-20
Q2HXW4	600	Netrin-1 OS=Sus scrofa GN	yes	N/A	0.408	0.118	0.589	2e-20
O09118	604	Netrin-1 OS=Mus musculus	yes	N/A	0.408	0.117	0.589	3e-20
Q924Z9	604	Netrin-1 OS=Rattus norveg	yes	N/A	0.408	0.117	0.589	3e-20
O95631	604	Netrin-1 OS=Homo sapiens	yes	N/A	0.408	0.117	0.589	3e-20
Q24567	726	Netrin-A OS=Drosophila me	no	N/A	0.356	0.085	0.591	9e-20
P34710	612	Netrin unc-6 OS=Caenorhab	yes	N/A	0.408	0.116	0.589	9e-20
Q90923	581	Netrin-3 (Fragment) OS=Ga	no	N/A	0.396	0.118	0.577	4e-19
O00634	580	Netrin-3 OS=Homo sapiens	no	N/A	0.431	0.129	0.474	1e-10

>sp|Q24568|NETB_DROME Netrin-B OS=Drosophila melanogaster GN=NetB PE=1 SV=1

 Score =  109 bits (272), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 59/77 (76%)

Query: 8   SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
           S GKK+ELTYISLSFCP+S +PDSLAI+KS DFG++WQP QFYSSQC+K YGR     IS
Sbjct: 131 SLGKKYELTYISLSFCPRSPRPDSLAIFKSSDFGQTWQPFQFYSSQCQKFYGRPDRAKIS 190

Query: 68  RGNEQEALCTDRHKKQG 84
           + NEQEA C +     G
Sbjct: 191 KFNEQEARCINSQHDTG 207

Netrins control guidance of CNS commissural axons and peripheral motor axons. Its association with either fra or unc-5 receptors will lead to axon attraction or repulsion, respectively. While short-range repulsion requires both fra and unc-5 receptors, long-range repulsion only requires unc-5.
Drosophila melanogaster (taxid: 7227)

>sp|Q90922|NET1_CHICK Netrin-1 OS=Gallus gallus GN=NTN1 PE=1 SV=1

 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 58/73 (79%), Gaps = 2/73 (2%)

Query: 8   SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
           S GKKFE+TY+SL FC  S +P+S+AIYKS D+GK+W P QFYS+QC+K+Y + +   I+
Sbjct: 139 SLGKKFEVTYVSLQFC--SPRPESMAIYKSMDYGKTWVPFQFYSTQCRKMYNKPSRAAIT 196

Query: 68  RGNEQEALCTDRH 80
           + NEQEA+CTD H
Sbjct: 197 KQNEQEAICTDSH 209

Netrins control guidance of CNS commissural axons and peripheral motor axons. Promotes neurite outgrowth from commissural axons but acts as a chemorepellent for trochlear motor axons. These effects are mediated by distinct receptors.

Gallus gallus (taxid: 9031)

>sp|Q2HXW4|NET1_PIG Netrin-1 OS=Sus scrofa GN=NTN1 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 57/73 (78%), Gaps = 2/73 (2%)

Query: 8   SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
           S GKKFE+TY+SL FC  S +P+S+AIYKS D+G++W P QFYS+QC+K+Y R     I+
Sbjct: 137 SLGKKFEVTYVSLQFC--SPRPESMAIYKSMDYGRTWVPFQFYSTQCRKMYNRPHRAPIT 194

Query: 68  RGNEQEALCTDRH 80
           + NEQEA+CTD H
Sbjct: 195 KQNEQEAVCTDSH 207

Netrins control guidance of CNS commissural axons and peripheral motor axons. Its association with either DCC or some UNC5 receptors will lead to axon attraction or repulsion, respectively. It also serve as a survival factor via its association with its receptors which prevent the initiation of apoptosis. Involved in colorectal tumorigenesis by regulating apoptosis.

Sus scrofa (taxid: 9823)

>sp|O09118|NET1_MOUSE Netrin-1 OS=Mus musculus GN=Ntn1 PE=1 SV=3

 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 57/73 (78%), Gaps = 2/73 (2%)

Query: 8   SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
           S GKKFE+TY+SL FC  S +P+S+AIYKS D+G++W P QFYS+QC+K+Y R     I+
Sbjct: 137 SLGKKFEVTYVSLQFC--SPRPESMAIYKSMDYGRTWVPFQFYSTQCRKMYNRPHRAPIT 194

Query: 68  RGNEQEALCTDRH 80
           + NEQEA+CTD H
Sbjct: 195 KQNEQEAVCTDSH 207

Netrins control guidance of CNS commissural axons and peripheral motor axons. Its association with either DCC or some UNC5 receptors will lead to axon attraction or repulsion, respectively. It also serve as a survival factor via its association with its receptors which prevent the initiation of apoptosis. Involved in colorectal tumorigenesis by regulating apoptosis.

Mus musculus (taxid: 10090)

>sp|Q924Z9|NET1_RAT Netrin-1 OS=Rattus norvegicus GN=Ntn1 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 57/73 (78%), Gaps = 2/73 (2%)

Query: 8   SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
           S GKKFE+TY+SL FC  S +P+S+AIYKS D+G++W P QFYS+QC+K+Y R     I+
Sbjct: 137 SLGKKFEVTYVSLQFC--SPRPESMAIYKSMDYGRTWVPFQFYSTQCRKMYNRPHRAPIT 194

Query: 68  RGNEQEALCTDRH 80
           + NEQEA+CTD H
Sbjct: 195 KQNEQEAVCTDSH 207

Netrins control guidance of CNS commissural axons and peripheral motor axons. Its association with either DCC or some UNC5 receptors will lead to axon attraction or repulsion, respectively. It also serve as a survival factor via its association with its receptors which prevent the initiation of apoptosis. Involved in colorectal tumorigenesis by regulating apoptosis.

Rattus norvegicus (taxid: 10116)

>sp|O95631|NET1_HUMAN Netrin-1 OS=Homo sapiens GN=NTN1 PE=1 SV=2

 Score = 97.8 bits (242), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 57/73 (78%), Gaps = 2/73 (2%)

Query: 8   SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
           S GKKFE+TY+SL FC  S +P+S+AIYKS D+G++W P QFYS+QC+K+Y R     I+
Sbjct: 137 SLGKKFEVTYVSLQFC--SPRPESMAIYKSMDYGRTWVPFQFYSTQCRKMYNRPHRAPIT 194

Query: 68  RGNEQEALCTDRH 80
           + NEQEA+CTD H
Sbjct: 195 KQNEQEAVCTDSH 207

Netrins control guidance of CNS commissural axons and peripheral motor axons. Its association with either DCC or some UNC5 receptors will lead to axon attraction or repulsion, respectively. It also serve as a survival factor via its association with its receptors which prevent the initiation of apoptosis. Involved in tumorigenesis by regulating apoptosis.

Homo sapiens (taxid: 9606)

>sp|Q24567|NETA_DROME Netrin-A OS=Drosophila melanogaster GN=NetA PE=2 SV=2

 Score = 96.3 bits (238), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 42/71 (59%), Positives = 51/71 (71%)

Query: 8   SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
           S GKKFELTY+ L  CP + +PDS+ IYKS D G SWQP QF+SSQC++L+GR A     
Sbjct: 133 SLGKKFELTYVILQLCPHAPRPDSMVIYKSTDHGLSWQPFQFFSSQCRRLFGRPARQSTG 192

Query: 68  RGNEQEALCTD 78
           R NE EA C+D
Sbjct: 193 RHNEHEARCSD 203

Netrins control guidance of CNS commissural axons at the midline and peripheral motor axons to their target muscles.

Drosophila melanogaster (taxid: 7227)

>sp|P34710|UNC6_CAEEL Netrin unc-6 OS=Caenorhabditis elegans GN=unc-6 PE=1 SV=1

 Score = 96.3 bits (238), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 56/73 (76%), Gaps = 2/73 (2%)

Query: 8   SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
           S GKKFELTY+S+ FC  S  PDS+A+YKS DFGK+W P QFYSS+C++++GR     I+
Sbjct: 134 SLGKKFELTYVSMHFC--SRLPDSMALYKSADFGKTWTPFQFYSSECRRIFGRDPDVSIT 191

Query: 68  RGNEQEALCTDRH 80
           + NEQEA+CT  H
Sbjct: 192 KSNEQEAVCTASH 204

Component of an extracellular matrix cue that guides dorsoventral migrations on the epidermis. Required for the guidance of pioneer axons and migrating cells along the body wall. Its association with either unc-40 or unc-5 receptors will lead to axon attraction or repulsion, respectively.

Caenorhabditis elegans (taxid: 6239)

>sp|Q90923|NET3_CHICK Netrin-3 (Fragment) OS=Gallus gallus GN=NTN3 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 56/71 (78%), Gaps = 2/71 (2%)

Query: 8   SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
           S GKKFE+ Y+SL FC  S +P+S AI+KS D+GK+W P Q+YSSQC+K+YG+ +   ++
Sbjct: 109 SLGKKFEVVYVSLQFC--SPRPESTAIFKSMDYGKTWVPYQYYSSQCRKIYGKPSKATVT 166

Query: 68  RGNEQEALCTD 78
           + NEQEALCTD
Sbjct: 167 KQNEQEALCTD 177

Netrins control guidance of CNS commissural axons and peripheral motor axons.

Gallus gallus (taxid: 9031)

>sp|O00634|NET3_HUMAN Netrin-3 OS=Homo sapiens GN=NTN3 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 10  GKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGR-TATGVISR 68
           GK FEL ++SL FC  S  P S+A+ KSQD G+SW PL F+SS C   YGR  A      
Sbjct: 112 GKAFELVFVSLRFC--SAPPASVALLKSQDHGRSWAPLGFFSSHCDLDYGRLPAPANGPA 169

Query: 69  GNEQEALCTDRHKKQGKG 86
           G   EALC      Q  G
Sbjct: 170 GPGPEALCFPAPLAQPDG 187

Netrins control guidance of CNS commissural axons and peripheral motor axons.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
328696441	548	PREDICTED: netrin-B-like [Acyrthosiphon	0.436	0.138	0.619	4e-26
157133720	646	netrin [Aedes aegypti] gi|108881486|gb|E	0.431	0.116	0.666	1e-25
170063792	445	netrin [Culex quinquefasciatus] gi|16788	0.431	0.168	0.641	2e-25
328776317	451	PREDICTED: netrin-A-like [Apis mellifera	0.419	0.161	0.609	1e-24
347963403	717	AGAP000225-PA [Anopheles gambiae str. PE	0.396	0.096	0.689	1e-24
242021734	732	Netrin-1 precursor, putative [Pediculus	0.385	0.091	0.680	2e-24
332028083	626	Netrin-A [Acromyrmex echinatior]	0.390	0.108	0.636	2e-24
350399310	652	PREDICTED: LOW QUALITY PROTEIN: netrin-B	0.425	0.113	0.614	2e-24
340727831	678	PREDICTED: netrin-B-like [Bombus terrest	0.419	0.107	0.609	2e-24
380026860	673	PREDICTED: netrin-A-like [Apis florea]	0.419	0.108	0.609	2e-24

>gi|328696441|ref|XP_003240023.1| PREDICTED: netrin-B-like [Acyrthosiphon pisum]

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 52/84 (61%), Positives = 66/84 (78%)

Query: 8   SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
           S GKK+ELTYI+L FCPK+ KPDS+A+YKS D+GK+WQP QFYS QC+K+YGR    +I+
Sbjct: 147 SLGKKYELTYINLQFCPKAAKPDSIAVYKSMDYGKTWQPFQFYSGQCRKVYGRPNRAIIT 206

Query: 68  RGNEQEALCTDRHKKQGKGKMSRR 91
           + NEQEALCTD H+  G G  + R
Sbjct: 207 KANEQEALCTDSHRFNGAGSSASR 230

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157133720|ref|XP_001662981.1| netrin [Aedes aegypti] gi|108881486|gb|EAT45711.1| AAEL003024-PA [Aedes aegypti]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/78 (66%), Positives = 64/78 (82%)

Query: 8   SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
           S GKK+ELTY+SL+FCP ++KPDS+AIYKS DFGKSWQP QFYSSQC+K+YGR     I+
Sbjct: 139 SLGKKYELTYVSLTFCPGAVKPDSIAIYKSADFGKSWQPFQFYSSQCRKVYGRPNRATIT 198

Query: 68  RGNEQEALCTDRHKKQGK 85
           + NEQEA CTD H+  G+
Sbjct: 199 KANEQEARCTDAHRHMGE 216

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170063792|ref|XP_001867257.1| netrin [Culex quinquefasciatus] gi|167881308|gb|EDS44691.1| netrin [Culex quinquefasciatus]

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/78 (64%), Positives = 64/78 (82%)

Query: 8   SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
           S GKK+ELTY+SL+FCP ++KPDS+AIYKS DFGK+WQP QFYSSQC+++YGR     I+
Sbjct: 137 SLGKKYELTYVSLTFCPGAVKPDSMAIYKSADFGKTWQPFQFYSSQCRRVYGRPNRATIT 196

Query: 68  RGNEQEALCTDRHKKQGK 85
           + NEQEA CTD H+  G+
Sbjct: 197 KSNEQEARCTDAHRHMGE 214

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776317|ref|XP_397225.4| PREDICTED: netrin-A-like [Apis mellifera]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 64/82 (78%)

Query: 8   SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
           S GKK+ELTY+SL FCPK+ KPDS+AIYKS D+GK+WQP QFYSSQC+++YGR     I+
Sbjct: 152 SLGKKYELTYVSLQFCPKAAKPDSIAIYKSMDYGKTWQPFQFYSSQCRRVYGRPNRATIT 211

Query: 68  RGNEQEALCTDRHKKQGKGKMS 89
           + NEQEA CTD H+  G   ++
Sbjct: 212 KANEQEARCTDSHRYTGGNGLA 233

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347963403|ref|XP_310908.5| AGAP000225-PA [Anopheles gambiae str. PEST] gi|333467216|gb|EAA06389.5| AGAP000225-PA [Anopheles gambiae str. PEST]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/74 (68%), Positives = 61/74 (82%)

Query: 8   SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
           S GKK+ELTYISL+FCP ++KPDS+AIYKS D GKSWQP QFYSSQC+++YGR     I+
Sbjct: 144 SLGKKYELTYISLTFCPGTVKPDSIAIYKSADHGKSWQPFQFYSSQCRRVYGRPNRATIT 203

Query: 68  RGNEQEALCTDRHK 81
           R NEQEA CTD H+
Sbjct: 204 RANEQEARCTDAHR 217

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021734|ref|XP_002431298.1| Netrin-1 precursor, putative [Pediculus humanus corporis] gi|212516566|gb|EEB18560.1| Netrin-1 precursor, putative [Pediculus humanus corporis]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/72 (68%), Positives = 63/72 (87%)

Query: 10  GKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRG 69
           GKK+ELTY+SL FCP+++KPDS+AIYKS D+GK+WQ LQFYS QCKK+YGR+   +I++ 
Sbjct: 145 GKKYELTYVSLQFCPQALKPDSIAIYKSMDYGKTWQALQFYSGQCKKVYGRSNRAIITKA 204

Query: 70  NEQEALCTDRHK 81
           NEQEALCTD H+
Sbjct: 205 NEQEALCTDSHR 216

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028083|gb|EGI68134.1| Netrin-A [Acromyrmex echinatior]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 62/77 (80%)

Query: 8   SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
           S GKK+ELTY+SL FCP++ KPDS+AIYKS D+GK+WQP QFYSSQC+++YGR     I+
Sbjct: 162 SLGKKYELTYVSLQFCPRAAKPDSIAIYKSMDYGKTWQPFQFYSSQCRRVYGRPNRATIT 221

Query: 68  RGNEQEALCTDRHKKQG 84
           + NEQEA CTD H+  G
Sbjct: 222 KANEQEARCTDSHRYTG 238

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399310|ref|XP_003485486.1| PREDICTED: LOW QUALITY PROTEIN: netrin-B-like [Bombus impatiens]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 64/83 (77%)

Query: 8   SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
           S GKK+ELTY+SL FCPK+ KPDS+AIYKS D+GK+WQP QFYSSQC+++YGR     I+
Sbjct: 149 SLGKKYELTYVSLQFCPKAAKPDSIAIYKSMDYGKTWQPFQFYSSQCRRVYGRPNRATIT 208

Query: 68  RGNEQEALCTDRHKKQGKGKMSR 90
           + NEQEA CTD H+  G    +R
Sbjct: 209 KANEQEARCTDSHRYTGGRPRAR 231

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727831|ref|XP_003402238.1| PREDICTED: netrin-B-like [Bombus terrestris]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 64/82 (78%)

Query: 8   SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
           S GKK+ELTY+SL FCPK+ KPDS+AIYKS D+GK+WQP QFYSSQC+++YGR     I+
Sbjct: 149 SLGKKYELTYVSLQFCPKAAKPDSIAIYKSMDYGKTWQPFQFYSSQCRRVYGRPNRATIT 208

Query: 68  RGNEQEALCTDRHKKQGKGKMS 89
           + NEQEA CTD H+  G   ++
Sbjct: 209 KANEQEARCTDSHRYTGGNGLA 230

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026860|ref|XP_003697158.1| PREDICTED: netrin-A-like [Apis florea]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 64/82 (78%)

Query: 8   SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
           S GKK+ELTY+SL FCPK+ KPDS+AIYKS D+GK+WQP QFYSSQC+++YGR     I+
Sbjct: 134 SLGKKYELTYVSLQFCPKAAKPDSIAIYKSMDYGKTWQPFQFYSSQCRRVYGRPNRATIT 193

Query: 68  RGNEQEALCTDRHKKQGKGKMS 89
           + NEQEA CTD H+  G   ++
Sbjct: 194 KANEQEARCTDSHRYTGGNGLA 215

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
WB|WBGene00006746	612	unc-6 [Caenorhabditis elegans	0.408	0.116	0.575	1.8e-23
UNIPROTKB|P34710	612	unc-6 "Netrin unc-6" [Caenorha	0.408	0.116	0.575	1.8e-23
FB|FBgn0015774	793	NetB "Netrin-B" [Drosophila me	0.511	0.112	0.6	1.8e-22
ZFIN|ZDB-GENE-990415-168	602	ntn1b "netrin 1b" [Danio rerio	0.408	0.117	0.589	1.2e-21
UNIPROTKB|F1SS89	356	NTN1 "Netrin-1" [Sus scrofa (t	0.408	0.199	0.589	1e-20
ZFIN|ZDB-GENE-050310-2	600	ntn2 "netrin 2" [Danio rerio (	0.408	0.118	0.616	1.4e-20
UNIPROTKB|Q90922	606	NTN1 "Netrin-1" [Gallus gallus	0.408	0.117	0.589	1.9e-20
ZFIN|ZDB-GENE-990415-169	603	ntn1a "netrin 1a" [Danio rerio	0.408	0.117	0.575	5.1e-20
UNIPROTKB|Q2HXW4	600	NTN1 "Netrin-1" [Sus scrofa (t	0.408	0.118	0.589	8.3e-20
UNIPROTKB|F1N0C7	603	NTN1 "Uncharacterized protein"	0.408	0.117	0.589	8.4e-20

WB|WBGene00006746 unc-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 239 (89.2 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
 Identities = 42/73 (57%), Positives = 56/73 (76%)

Query:     8 SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
             S GKKFELTY+S+ FC +   PDS+A+YKS DFGK+W P QFYSS+C++++GR     I+
Sbjct:   134 SLGKKFELTYVSMHFCSRL--PDSMALYKSADFGKTWTPFQFYSSECRRIFGRDPDVSIT 191

Query:    68 RGNEQEALCTDRH 80
             + NEQEA+CT  H
Sbjct:   192 KSNEQEAVCTASH 204

GO:0016021 "integral to membrane" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0008078 "mesodermal cell migration" evidence=IMP

GO:0033563 "dorsal/ventral axon guidance" evidence=IGI;IMP

GO:0030334 "regulation of cell migration" evidence=IGI;IMP

GO:0035262 "gonad morphogenesis" evidence=IGI;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0030424 "axon" evidence=IDA

GO:0005102 "receptor binding" evidence=ISS

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0005604 "basement membrane" evidence=IDA

GO:0031175 "neuron projection development" evidence=IMP

UNIPROTKB|P34710 unc-6 "Netrin unc-6" [Caenorhabditis elegans (taxid:6239)]

 Score = 239 (89.2 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
 Identities = 42/73 (57%), Positives = 56/73 (76%)

Query:     8 SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
             S GKKFELTY+S+ FC +   PDS+A+YKS DFGK+W P QFYSS+C++++GR     I+
Sbjct:   134 SLGKKFELTYVSMHFCSRL--PDSMALYKSADFGKTWTPFQFYSSECRRIFGRDPDVSIT 191

Query:    68 RGNEQEALCTDRH 80
             + NEQEA+CT  H
Sbjct:   192 KSNEQEAVCTASH 204

GO:0005576 "extracellular region" evidence=TAS

FB|FBgn0015774 NetB "Netrin-B" [Drosophila melanogaster (taxid:7227)]

 Score = 271 (100.5 bits), Expect = 1.8e-22, P = 1.8e-22
 Identities = 54/90 (60%), Positives = 63/90 (70%)

Query:     8 SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
             S GKK+ELTYISLSFCP+S +PDSLAI+KS DFG++WQP QFYSSQC+K YGR     IS
Sbjct:   131 SLGKKYELTYISLSFCPRSPRPDSLAIFKSSDFGQTWQPFQFYSSQCQKFYGRPDRAKIS 190

Query:    68 RGNEQEALCTDRHKKQGKGKMSRRRTNCQE 97
             + NEQEA C +     G G   R   N  E
Sbjct:   191 KFNEQEARCINSQHDTG-GAAQRFAFNTLE 219

GO:0005576 "extracellular region" evidence=ISS

GO:0016200 "synaptic target attraction" evidence=TAS

GO:0007411 "axon guidance" evidence=IGI;ISS;NAS

GO:0005578 "proteinaceous extracellular matrix" evidence=ISS

GO:0070983 "dendrite guidance" evidence=IGI

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0007432 "salivary gland boundary specification" evidence=IMP

GO:0008039 "synaptic target recognition" evidence=IMP

GO:0008347 "glial cell migration" evidence=IMP

GO:2000289 "regulation of photoreceptor cell axon guidance" evidence=IMP

ZFIN|ZDB-GENE-990415-168 ntn1b "netrin 1b" [Danio rerio (taxid:7955)]

 Score = 249 (92.7 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
 Identities = 43/73 (58%), Positives = 58/73 (79%)

Query:     8 SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
             S GKKFE+TY+SL FC  S +P+S+AI+KS D+GK+W P QFYS+QCKK+Y + +   I+
Sbjct:   136 SLGKKFEVTYVSLQFC--SPRPESMAIFKSMDYGKTWVPFQFYSTQCKKMYNKPSKAAIT 193

Query:    68 RGNEQEALCTDRH 80
             + NEQEA+CTD H
Sbjct:   194 KQNEQEAICTDSH 206

GO:0005576 "extracellular region" evidence=IEA

GO:0016358 "dendrite development" evidence=IGI

UNIPROTKB|F1SS89 NTN1 "Netrin-1" [Sus scrofa (taxid:9823)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 43/73 (58%), Positives = 57/73 (78%)

Query:     8 SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
             S GKKFE+TY+SL FC  S +P+S+AIYKS D+G++W P QFYS+QC+K+Y R     I+
Sbjct:   137 SLGKKFEVTYVSLQFC--SPRPESMAIYKSMDYGRTWVPFQFYSTQCRKMYNRPHRAPIT 194

Query:    68 RGNEQEALCTDRH 80
             + NEQEA+CTD H
Sbjct:   195 KQNEQEAVCTDSH 207

GO:0060603 "mammary gland duct morphogenesis" evidence=IEA

GO:0045773 "positive regulation of axon extension" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0040023 "establishment of nucleus localization" evidence=IEA

GO:0030517 "negative regulation of axon extension" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

ZFIN|ZDB-GENE-050310-2 ntn2 "netrin 2" [Danio rerio (taxid:7955)]

 Score = 251 (93.4 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query:     8 SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
             S GKKFE+TY+SL FC  S +P+SLAIYKS D+G++W P QFYSSQC+++Y R     I+
Sbjct:   123 SLGKKFEITYVSLQFC--SPRPESLAIYKSMDYGRTWTPYQFYSSQCRRMYNRPNKAAIT 180

Query:    68 RGNEQEALCTDRH 80
             + NEQEALCTD H
Sbjct:   181 KQNEQEALCTDGH 193

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|Q90922 NTN1 "Netrin-1" [Gallus gallus (taxid:9031)]

 Score = 250 (93.1 bits), Expect = 1.9e-20, P = 1.9e-20
 Identities = 43/73 (58%), Positives = 58/73 (79%)

Query:     8 SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
             S GKKFE+TY+SL FC  S +P+S+AIYKS D+GK+W P QFYS+QC+K+Y + +   I+
Sbjct:   139 SLGKKFEVTYVSLQFC--SPRPESMAIYKSMDYGKTWVPFQFYSTQCRKMYNKPSRAAIT 196

Query:    68 RGNEQEALCTDRH 80
             + NEQEA+CTD H
Sbjct:   197 KQNEQEAICTDSH 209

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0071944 "cell periphery" evidence=IDA

ZFIN|ZDB-GENE-990415-169 ntn1a "netrin 1a" [Danio rerio (taxid:7955)]

 Score = 246 (91.7 bits), Expect = 5.1e-20, P = 5.1e-20
 Identities = 42/73 (57%), Positives = 58/73 (79%)

Query:     8 SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
             S GKKFE+TY+SL FC  S +P+S+AI+KS D+GKSW P Q+YS+QC+K+Y + +   I+
Sbjct:   136 SLGKKFEVTYVSLQFC--SPRPESMAIFKSMDYGKSWVPFQYYSTQCRKMYNKPSKATIT 193

Query:    68 RGNEQEALCTDRH 80
             + NEQEA+CTD H
Sbjct:   194 KQNEQEAICTDSH 206

GO:0033564 "anterior/posterior axon guidance" evidence=IMP

GO:0048665 "neuron fate specification" evidence=IMP

GO:0016525 "negative regulation of angiogenesis" evidence=IMP

GO:0001569 "patterning of blood vessels" evidence=IMP

GO:0005576 "extracellular region" evidence=IEA

GO:0001525 "angiogenesis" evidence=IMP

GO:0016358 "dendrite development" evidence=IGI

UNIPROTKB|Q2HXW4 NTN1 "Netrin-1" [Sus scrofa (taxid:9823)]

 Score = 244 (91.0 bits), Expect = 8.3e-20, P = 8.3e-20
 Identities = 43/73 (58%), Positives = 57/73 (78%)

Query:     8 SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
             S GKKFE+TY+SL FC  S +P+S+AIYKS D+G++W P QFYS+QC+K+Y R     I+
Sbjct:   137 SLGKKFEVTYVSLQFC--SPRPESMAIYKSMDYGRTWVPFQFYSTQCRKMYNRPHRAPIT 194

Query:    68 RGNEQEALCTDRH 80
             + NEQEA+CTD H
Sbjct:   195 KQNEQEAVCTDSH 207

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

UNIPROTKB|F1N0C7 NTN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 244 (91.0 bits), Expect = 8.4e-20, P = 8.4e-20
 Identities = 43/73 (58%), Positives = 57/73 (78%)

Query:     8 SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS 67
             S GKKFE+TY+SL FC  S +P+S+AIYKS D+G++W P QFYS+QC+K+Y R     I+
Sbjct:   136 SLGKKFEVTYVSLQFC--SPRPESMAIYKSMDYGRTWVPFQFYSTQCRKMYNRPHRAPIT 193

Query:    68 RGNEQEALCTDRH 80
             + NEQEA+CTD H
Sbjct:   194 KQNEQEAVCTDSH 206

GO:0060603 "mammary gland duct morphogenesis" evidence=IEA

GO:0045773 "positive regulation of axon extension" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0040023 "establishment of nucleus localization" evidence=IEA

GO:0030517 "negative regulation of axon extension" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2HXW4	NET1_PIG	No assigned EC number	0.5890	0.4080	0.1183	yes	N/A
P34710	UNC6_CAEEL	No assigned EC number	0.5890	0.4080	0.1160	yes	N/A
O95631	NET1_HUMAN	No assigned EC number	0.5890	0.4080	0.1175	yes	N/A
Q90922	NET1_CHICK	No assigned EC number	0.5890	0.4080	0.1171	yes	N/A
Q924Z9	NET1_RAT	No assigned EC number	0.5890	0.4080	0.1175	yes	N/A
O09118	NET1_MOUSE	No assigned EC number	0.5890	0.4080	0.1175	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	174
smart00136	238	smart00136, LamNT, Laminin N-terminal domain (doma	2e-26
smart00136	238	smart00136, LamNT, Laminin N-terminal domain (doma	4e-24
pfam00055	237	pfam00055, Laminin_N, Laminin N-terminal (Domain V	1e-11
pfam00055	237	pfam00055, Laminin_N, Laminin N-terminal (Domain V	6e-08

>gnl|CDD|214532 smart00136, LamNT, Laminin N-terminal domain (domain VI)

 Score =  100 bits (250), Expect = 2e-26
 Identities = 34/74 (45%), Positives = 49/74 (66%), Gaps = 3/74 (4%)

Query: 10  GKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRG 69
           GK+F +TY+ L FC  S +P SL I +  DFGK+WQP Q++SS C++ +GR   G I++G
Sbjct: 95  GKEFHVTYVILKFC--SPRP-SLWILERSDFGKTWQPWQYFSSDCRRTFGRPPRGPITKG 151

Query: 70  NEQEALCTDRHKKQ 83
           NE E +CT  +   
Sbjct: 152 NEDEVICTSEYSDI 165

N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins. Length = 238

>gnl|CDD|214532 smart00136, LamNT, Laminin N-terminal domain (domain VI)

 Score = 94.0 bits (234), Expect = 4e-24
 Identities = 41/84 (48%), Positives = 44/84 (52%), Gaps = 12/84 (14%)

Query: 97  EVKVNSVCGLESPERYCDTSG------ACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRS 150
           EV   S CG   PERYC   G       C  CDA +PR   PAE LTD NNP+N T W+S
Sbjct: 19  EVTATSTCGEPGPERYCKLVGHTEQGKKCDYCDARNPRRSHPAENLTDGNNPNNPTWWQS 78

Query: 151 EAQTSVNSLSASPDNVTLTLSLEK 174
           E       LS  P NV LTL L K
Sbjct: 79  E------PLSNGPQNVNLTLDLGK 96

N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins. Length = 238

>gnl|CDD|215682 pfam00055, Laminin_N, Laminin N-terminal (Domain VI)

 Score = 60.6 bits (147), Expect = 1e-11
 Identities = 34/86 (39%), Positives = 42/86 (48%), Gaps = 12/86 (13%)

Query: 97  EVKVNSVCGLESPERYCDTSG------ACHVCDAGSP--RGRFPAEYLTDLNNPSNVTCW 148
            +   S CGL  PE YC  S        C +CD+ SP  R   P  +LTD  NP + T W
Sbjct: 13  ALSATSTCGLHGPEPYCILSHLQPRDKKCFLCDSNSPNPRESHPISFLTDTFNPQDTTWW 72

Query: 149 RSEAQTSVNSLSASPDNVTLTLSLEK 174
           +SE  T  N +     NVT+TL LE 
Sbjct: 73  QSE--TMQNGVQY--PNVTITLDLEA 94

Length = 237

>gnl|CDD|215682 pfam00055, Laminin_N, Laminin N-terminal (Domain VI)

 Score = 50.2 bits (120), Expect = 6e-08
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 10  GKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRG 69
             +F  TY+ + F  K+ +P ++   +S DFG  W P Q+Y+  C+  Y       I  G
Sbjct: 93  EAEFHFTYVIIKF--KTFRPAAMIYERSSDFGT-WIPYQYYAYSCESTYPGIPRRPIRTG 149

Query: 70  -NEQEALCTDRHKK 82
             E + +CT R+  
Sbjct: 150 RAEDDVICTSRYSD 163

Length = 237

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
smart00136	238	LamNT Laminin N-terminal domain (domain VI). N-ter	99.95
smart00136	238	LamNT Laminin N-terminal domain (domain VI). N-ter	99.95
PF00055	237	Laminin_N: Laminin N-terminal (Domain VI); InterPr	99.94
KOG3512|consensus	592		99.93
PF00055	237	Laminin_N: Laminin N-terminal (Domain VI); InterPr	99.93
KOG3512|consensus	592		99.85
KOG0994|consensus	1758		99.84
KOG0994|consensus	1758		99.75
KOG1836|consensus	1705		99.31
KOG1836|consensus	1705		98.93
PF00754	129	F5_F8_type_C: F5/8 type C domain; InterPro: IPR000	95.87
PF02012	12	BNR: BNR/Asp-box repeat; InterPro: IPR002860 Membe	95.48
cd00057	143	FA58C Substituted updates: Jan 31, 2002	95.02
cd08665	131	APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit	81.5
cd08366	139	APC10 APC10 subunit of the anaphase-promoting comp	81.06
cd08365	131	APC10-like1 APC10-like DOC1 domains of E3 ubiquiti	80.39

>smart00136 LamNT Laminin N-terminal domain (domain VI)

Probab=99.95  E-value=2.1e-28  Score=205.03  Aligned_cols=89  Identities=45%  Similarity=0.752  Sum_probs=81.5

Q ss_pred             CccccccccccccCCCcccccccccceeeEeccccCCCCceeeecc------CcccccCCCCCCCCCCCccccccCCCCC
Q psy17215         71 EQEALCTDRHKKQGKGKMSRRRTNCQEVKVNSVCGLESPERYCDTS------GACHVCDAGSPRGRFPAEYLTDLNNPSN  144 (174)
Q Consensus        71 ~~~~~C~p~~s~la~g~~~~~~~~~~~v~assTCG~~~pe~~C~~~------~~C~~Cd~~~p~~~Hp~~~ltD~~~~~~  144 (174)
                      .....|+|.+.|+|+|+         +|.|+||||+.+||+||+++      .+|++||+++|.++||+++|||.+++++
T Consensus         2 ~~~~~C~P~~~nla~g~---------~v~assTCG~~~pe~yC~~~~~~~~~~~C~~CDa~~p~~~Hp~~~l~D~~~~~~   72 (238)
T smart00136        2 GRPRSCYPPFVNLAFGR---------EVTATSTCGEPGPERYCKLVGHTEQGKKCDYCDARNPRRSHPAENLTDGNNPNN   72 (238)
T ss_pred             CCCccccCchhhhhcCC---------eeeEecCCCCCCCcceeEeccccCcCCcCCCCCCCCccccCCHHHhhccCCCCC
Confidence            35678999999999999         99999999999999999983      3799999999999999999999999999


Q ss_pred             ceeecCCCCCCCCCCCCCCCeeEEEEeCCC
Q psy17215        145 VTCWRSEAQTSVNSLSASPDNVTLTLSLEK  174 (174)
Q Consensus       145 ~TwWQS~~~~~~~~~~~~p~~VtltLdLgk  174 (174)
                      .|||||+++.      ..+++|||||||||
T Consensus        73 ~TwWQS~~~~------~~~~~VtitLdL~k   96 (238)
T smart00136       73 PTWWQSEPLS------NGPQNVNLTLDLGK   96 (238)
T ss_pred             CceecCCCcC------CCCccEEEEEecCC
Confidence            9999999986      33478999999997

N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.

>smart00136 LamNT Laminin N-terminal domain (domain VI)

Probab=99.95  E-value=1.7e-27  Score=199.53  Aligned_cols=80  Identities=40%  Similarity=0.835  Sum_probs=76.2

Q ss_pred             ceeEEeeCCCeEEEEEEEEEeeeCCCCCCeEEEEEecCCCCCceeeecchhhhhhhcCCCCCCCcccCCCcccccccccc
Q psy17215          2 HFCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHK   81 (174)
Q Consensus         2 ~v~ltldL~~~f~v~~v~l~f~~~sprP~s~~iekS~d~G~~W~p~qyfa~~C~~~Fg~~~~~~~~~~~~~~~~C~p~~s   81 (174)
                      +|||||||+|+|||+||+|+|+  +|||++|+|||| |+|++|+||||||.+|.+.|||++++.+...++++++|++.|+
T Consensus        87 ~VtitLdL~k~fevtyi~l~F~--s~RPa~~i~erS-d~G~tW~p~qyfa~dC~~~f~~~~~~~~~~~n~~~v~Ct~~ys  163 (238)
T smart00136       87 NVNLTLDLGKEFHVTYVILKFC--SPRPSLWILERS-DFGKTWQPWQYFSSDCRRTFGRPPRGPITKGNEDEVICTSEYS  163 (238)
T ss_pred             cEEEEEecCCEEEEEEEEEEec--CCCCceEEEeec-CCCCCCcEeeeeecchhhhcCCCCCCCCCCCCCCccEECCCCC
Confidence            4999999999999999999999  999999999999 9999999999999999999999999887767899999999999


Q ss_pred             ccC
Q psy17215         82 KQG   84 (174)
Q Consensus        82 ~la   84 (174)
                      ++.
T Consensus       164 ~~~  166 (238)
T smart00136      164 DIV  166 (238)
T ss_pred             CCc
Confidence            873

N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.

>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue

Probab=99.94  E-value=1.4e-27  Score=199.89  Aligned_cols=81  Identities=36%  Similarity=0.774  Sum_probs=67.4

Q ss_pred             ceeEEeeCCCeEEEEEEEEEeeeCCCCCCeEEEEEecCCCCCceeeecchhhhhhhcCCCCCCCccc-CCCccccccccc
Q psy17215          2 HFCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISR-GNEQEALCTDRH   80 (174)
Q Consensus         2 ~v~ltldL~~~f~v~~v~l~f~~~sprP~s~~iekS~d~G~~W~p~qyfa~~C~~~Fg~~~~~~~~~-~~~~~~~C~p~~   80 (174)
                      +|||||||+++|||+||+|+|+  ||||++|+||||.|+| +|+||||||.+|.+.|||++.+.+.. .+.++++|+..|
T Consensus        85 ~VtitLdL~~~f~v~~v~l~F~--spRP~~miierS~D~g-tW~p~qYfA~~C~~~f~~~~~~~~~~~~~~~~v~Ct~~y  161 (237)
T PF00055_consen   85 NVTITLDLGKEFEVTYVILQFC--SPRPAAMIIERSSDFG-TWQPWQYFASDCSRTFGMPPNGPPPKFANPDEVICTSRY  161 (237)
T ss_dssp             -EEEEEEEEEEEEEEEEEEEES--S---SEEEEEEESSTT-SEEEEEEEESSHHHHCS--BTTGGG-STSTT---EESTT
T ss_pred             ceEEEEcccceEEEEEEEEEEc--CCCCCeEEEEEccCCC-ceeEeHHhhcCChhhcCCcccccccccCCCCcCeecCcC
Confidence            6999999999999999999999  9999999999999999 99999999999999999999987653 789999999999


Q ss_pred             cccCC
Q psy17215         81 KKQGK   85 (174)
Q Consensus        81 s~la~   85 (174)
                      +++..
T Consensus       162 S~~~P  166 (237)
T PF00055_consen  162 SDIEP  166 (237)
T ss_dssp             TTSSS
T ss_pred             CCCcC
Confidence            99843

Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.

>KOG3512|consensus

Probab=99.93  E-value=4.4e-26  Score=203.73  Aligned_cols=82  Identities=55%  Similarity=0.958  Sum_probs=77.7

Q ss_pred             CceeEEeeCCCeEEEEEEEEEeeeCCCCCCeEEEEEecCCCCCceeeecchhhhhhhcCC-CCCCCcccCCCcccccccc
Q psy17215          1 LHFCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGR-TATGVISRGNEQEALCTDR   79 (174)
Q Consensus         1 ~~v~ltldL~~~f~v~~v~l~f~~~sprP~s~~iekS~d~G~~W~p~qyfa~~C~~~Fg~-~~~~~~~~~~~~~~~C~p~   79 (174)
                      |+|||||+|||+||||||+|+|+  |+||++|+||||.|+|+||+||||||.+|.+.||| +....++.+++++++|++.
T Consensus       124 lnVtlTLSlgKkfELT~Vsl~Fc--S~rPdsmaL~KS~D~GrTWqPfQFYss~C~~~fgr~~~~a~isk~n~~Ea~Ct~s  201 (592)
T KOG3512|consen  124 LNVTLTLSLGKKFELTYVSLTFC--SGRPDSMALEKSLDYGRTWQPFQFYSSDCRKAFGRSPRRADISKSNEQEALCTES  201 (592)
T ss_pred             ceEEEEEecCcEEEEEEEEEEEe--cCCCceeeeeeccccCCcccccchhHHHHHHHhCCCCcccccccCCccceeeccc
Confidence            68999999999999999999999  99999999999999999999999999999999999 5555677799999999999


Q ss_pred             ccccC
Q psy17215         80 HKKQG   84 (174)
Q Consensus        80 ~s~la   84 (174)
                      |+..+
T Consensus       202 ~~~~~  206 (592)
T KOG3512|consen  202 YSDGA  206 (592)
T ss_pred             cccCC
Confidence            99886

>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue

Probab=99.93  E-value=8.5e-27  Score=195.18  Aligned_cols=86  Identities=44%  Similarity=0.796  Sum_probs=56.9

Q ss_pred             ccccccccCCCcccccccccceeeEeccccCCCCceeeeccC------cccccCCCCCC--CCCCCccccccCCCCCcee
Q psy17215         76 CTDRHKKQGKGKMSRRRTNCQEVKVNSVCGLESPERYCDTSG------ACHVCDAGSPR--GRFPAEYLTDLNNPSNVTC  147 (174)
Q Consensus        76 C~p~~s~la~g~~~~~~~~~~~v~assTCG~~~pe~~C~~~~------~C~~Cd~~~p~--~~Hp~~~ltD~~~~~~~Tw  147 (174)
                      |+|++.|+|+||         .|.|+||||+++||+||++.+      +|++||+++|.  ++||+++|||.+++++.||
T Consensus         1 C~P~~~nla~gr---------~v~assTCG~~~pe~yC~~~~~~~~~~~C~~Cda~~~~~~~~Hp~~~~~D~~~~~~~Tw   71 (237)
T PF00055_consen    1 CYPPFGNLAFGR---------EVTASSTCGEPGPERYCRLSGSQGRQRQCFICDASDPDPRRSHPPSYLTDSHNPNNSTW   71 (237)
T ss_dssp             -----EETTTT----------EEECCCBS-SS--EEE--SSSTTT---E-EEE-TTSTSTTT---GGGGCSSSCTTB---
T ss_pred             CCCCcchhhcCC---------EeEEEcCCCCCCCccceeccCccccCcccccCCCcccccccccChhhcccccccccCce
Confidence            899999999999         999999999999999999864      59999999876  9999999999999999999


Q ss_pred             ecCCCCCCCCCCCCCCCeeEEEEeCCC
Q psy17215        148 WRSEAQTSVNSLSASPDNVTLTLSLEK  174 (174)
Q Consensus       148 WQS~~~~~~~~~~~~p~~VtltLdLgk  174 (174)
                      |||+++.   .|.++ ++|||||||||
T Consensus        72 WQS~~~~---~g~~~-~~VtitLdL~~   94 (237)
T PF00055_consen   72 WQSETLQ---NGVQY-ENVTITLDLGK   94 (237)
T ss_dssp             EEB--ST---TTTST-T-EEEEEEEEE
T ss_pred             ecCCccC---CCCcC-cceEEEEcccc
Confidence            9999875   34555 59999999986

Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.

>KOG3512|consensus

Probab=99.85  E-value=9.7e-22  Score=176.00  Aligned_cols=92  Identities=42%  Similarity=0.750  Sum_probs=85.6

Q ss_pred             CCCccccccccccccCCCcccccccccceeeEeccccCCCCceeeeccC--ccc-ccCCCCCCCCCCCccccccCCCCCc
Q psy17215         69 GNEQEALCTDRHKKQGKGKMSRRRTNCQEVKVNSVCGLESPERYCDTSG--ACH-VCDAGSPRGRFPAEYLTDLNNPSNV  145 (174)
Q Consensus        69 ~~~~~~~C~p~~s~la~g~~~~~~~~~~~v~assTCG~~~pe~~C~~~~--~C~-~Cd~~~p~~~Hp~~~ltD~~~~~~~  145 (174)
                      .+.....|.|++.|+++|+         +|.|++||| ++||+||.+..  .|. .||+++|.++||++.|||+++++|.
T Consensus        40 e~g~p~~C~P~~vnaa~g~---------~V~as~TCG-drPe~~c~~~~~~~~~~eCdAs~p~~AHpPalltD~n~~~n~  109 (592)
T KOG3512|consen   40 ETGEPRACQPEFVNAAFGK---------KVPASSTCG-DRPETFCSVENPYLCSNECDASNPDLAHPPALLTDLNGPGNA  109 (592)
T ss_pred             CCCCeeecChhhhhhhhCC---------ccCCccccC-CCccceeeecCCCcccccccCCCccccCChHHhcCCCCCCCc
Confidence            5678899999999999999         999999999 89999999864  566 8999999999999999999999999


Q ss_pred             eeecCCCCCCCCCCCCCCCeeEEEEeCCC
Q psy17215        146 TCWRSEAQTSVNSLSASPDNVTLTLSLEK  174 (174)
Q Consensus       146 TwWQS~~~~~~~~~~~~p~~VtltLdLgk  174 (174)
                      |+|||+++.    .++.|.||||||+|||
T Consensus       110 TcWqS~tw~----~~~~PlnVtlTLSlgK  134 (592)
T KOG3512|consen  110 TCWQSETWS----RYPSPLNVTLTLSLGK  134 (592)
T ss_pred             ceeeccccC----CCCCCceEEEEEecCc
Confidence            999999885    6789999999999998

>KOG0994|consensus

Probab=99.84  E-value=2.9e-21  Score=185.41  Aligned_cols=84  Identities=20%  Similarity=0.469  Sum_probs=78.1

Q ss_pred             ceeEEeeCCCeEEEEEEEEEeeeCCCCCCeEEEEEecCCCCCceeeecchhhhhhhcCCCCCCCcccCCCcccccccccc
Q psy17215          2 HFCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHK   81 (174)
Q Consensus         2 ~v~ltldL~~~f~v~~v~l~f~~~sprP~s~~iekS~d~G~~W~p~qyfa~~C~~~Fg~~~~~~~~~~~~~~~~C~p~~s   81 (174)
                      +|+|+|||+.+|++|++||.|+  +|||++|+||||.|||+||.+|+|||.||..+|+..+++++  ...++++|+++||
T Consensus       120 ~vtIQLDLEAEFhFTHLImtFk--tfRPAAMliERS~DFGkTW~vYrYFAyDC~asFPGv~~~~~--kk~~DviCtSrYS  195 (1758)
T KOG0994|consen  120 NVTIQLDLEAEFHFTHLIMTFK--TFRPAAMLIERSSDFGKTWHVYRYFAYDCSATFPGVPTGPP--KKWDDVICTSRYS  195 (1758)
T ss_pred             cceEEeehhhheeeeeeeEeec--cCCcceeeeeecccccccceeeeeeecccccCCCCCCCCCc--ccccceeeecccC
Confidence            5899999999999999999999  99999999999999999999999999999999988888876  6689999999999


Q ss_pred             ccCCCccc
Q psy17215         82 KQGKGKMS   89 (174)
Q Consensus        82 ~la~g~~~   89 (174)
                      ++....++
T Consensus       196 ~~~PstgG  203 (1758)
T KOG0994|consen  196 DPEPSTGG  203 (1758)
T ss_pred             CCCCCCCC
Confidence            98766543

>KOG0994|consensus

Probab=99.75  E-value=5.5e-19  Score=169.98  Aligned_cols=89  Identities=33%  Similarity=0.581  Sum_probs=75.4

Q ss_pred             CCCccccccccccccCCCcccccccccceeeEeccccCCCCceeeeccC-----cccccCCCCCCCCCC-----Cccccc
Q psy17215         69 GNEQEALCTDRHKKQGKGKMSRRRTNCQEVKVNSVCGLESPERYCDTSG-----ACHVCDAGSPRGRFP-----AEYLTD  138 (174)
Q Consensus        69 ~~~~~~~C~p~~s~la~g~~~~~~~~~~~v~assTCG~~~pe~~C~~~~-----~C~~Cd~~~p~~~Hp-----~~~ltD  138 (174)
                      ....+..|+|..+||++||..       ++.|+||||+++||+||+++.     +|++||++.|++.|+     +++++.
T Consensus        29 ~~c~~~sCyP~tGnLliGR~~-------~L~AsSTCGl~~pe~yCi~Shlqdq~KCf~Cdsr~p~~~~~~pshrienVvs  101 (1758)
T KOG0994|consen   29 SGCSRGSCYPATGNLLIGRAR-------KLTASSTCGLNKPERYCIVSHLQDQKKCFKCDSRYPHKAHLNPSHRIENVVS  101 (1758)
T ss_pred             CccccCCcCCCccceeecchh-------heeecccccCCCCcceEEeeccccccccccccCCCccccCCChhhhhhhhhh
Confidence            357899999999999999944       899999999999999999984     899999999976555     555443


Q ss_pred             cC-CCCCceeecCCCCCCCCCCCCCCCeeEEEEeCC
Q psy17215        139 LN-NPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLE  173 (174)
Q Consensus       139 ~~-~~~~~TwWQS~~~~~~~~~~~~p~~VtltLdLg  173 (174)
                      .. .+.|.|||||+++.         ++|+|+|||+
T Consensus       102 s~~p~r~~~WWQSengv---------~~vtIQLDLE  128 (1758)
T KOG0994|consen  102 SFAPPRNITWWQSENGV---------ENVTIQLDLE  128 (1758)
T ss_pred             ccCCCcccchhhcccCC---------CcceEEeehh
Confidence            33 44557999999987         8999999997

>KOG1836|consensus

Probab=99.31  E-value=1.3e-12  Score=132.31  Aligned_cols=95  Identities=22%  Similarity=0.326  Sum_probs=76.9

Q ss_pred             eeEEeeCCCeEEEEEEEEEeeeCCCCCCeEEEEEecCCCCCceeeecchhhhhhhcCCCCCCCccc-CCCcccccccccc
Q psy17215          3 FCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISR-GNEQEALCTDRHK   81 (174)
Q Consensus         3 v~ltldL~~~f~v~~v~l~f~~~sprP~s~~iekS~d~G~~W~p~qyfa~~C~~~Fg~~~~~~~~~-~~~~~~~C~p~~s   81 (174)
                      |+++++++++|++.++++++. |||||++|+||||+|++++|+||||||.+|...+..+....+.. .+++.++|++.|+
T Consensus       123 ~~~~~~~~g~~~~i~~~~~~~-~sprp~s~~l~k~~~~~g~~~p~q~~s~s~~~~~~~~~~~~l~~~~~d~~~~Ct~e~S  201 (1705)
T KOG1836|consen  123 VTNLTDLLGKFRIITVVRKKA-NSPRPESFGLYKSTDEDGPWCPWQFCSGSCRDCLSRPDRQALRGGENDDAAICTTEFS  201 (1705)
T ss_pred             hhhhhhcCCeEEEEEeeeecc-CCCCCccceeecccccCCCcCCceeecccCccccccCCcccccCCCCCccceeccccc
Confidence            778888888877777665555 59999999999999999999999999999998888887777654 4889999999999


Q ss_pred             ccCCCcccccccccceeeEeccccC
Q psy17215         82 KQGKGKMSRRRTNCQEVKVNSVCGL  106 (174)
Q Consensus        82 ~la~g~~~~~~~~~~~v~assTCG~  106 (174)
                      ++-.-.        +-..|-|++..
T Consensus       202 ~i~PL~--------ng~i~~s~l~g  218 (1705)
T KOG1836|consen  202 DISPLE--------NGEIAFSTLEG  218 (1705)
T ss_pred             cCcccc--------cchhhhhhhcC
Confidence            984222        03556777774

>KOG1836|consensus

Probab=98.93  E-value=5.5e-10  Score=113.65  Aligned_cols=87  Identities=21%  Similarity=0.295  Sum_probs=73.7

Q ss_pred             CccccccccccccCCCcccccccccceeeEeccccCCCCceeeeccC-------cccccCCCCCCCCCCCccccccCCCC
Q psy17215         71 EQEALCTDRHKKQGKGKMSRRRTNCQEVKVNSVCGLESPERYCDTSG-------ACHVCDAGSPRGRFPAEYLTDLNNPS  143 (174)
Q Consensus        71 ~~~~~C~p~~s~la~g~~~~~~~~~~~v~assTCG~~~pe~~C~~~~-------~C~~Cd~~~p~~~Hp~~~ltD~~~~~  143 (174)
                      .....|.|++.+.+...         .+.++.|||+.++ .||...+       .|.+|+++.++..||+++|||.+.  
T Consensus        37 ~r~q~~~pe~~~aa~~~---------~~~~~~~cg~~~~-~~c~~~~~~g~~~~~C~~C~~ag~~~~h~~~~~id~~~--  104 (1705)
T KOG1836|consen   37 GRQQASCPEFANAAGNL---------LATETNTCGLKGG-GYCVPCNCNGHSNGYCVICNAAGEHCEHPASNLIDGAV--  104 (1705)
T ss_pred             CcccccccccccccCCc---------ceeEeccccCCCC-CcCcccCCcCCCCCcceeCCCCCcccccCHhhhccCCc--
Confidence            33488999999999999         9999999998777 9999753       599999999999999999999876  


Q ss_pred             CceeecCCCCCCCCCCCCCCCeeEEEEeCC
Q psy17215        144 NVTCWRSEAQTSVNSLSASPDNVTLTLSLE  173 (174)
Q Consensus       144 ~~TwWQS~~~~~~~~~~~~p~~VtltLdLg  173 (174)
                      ..|||||+++.   .+.+++ .||++++|+
T Consensus       105 ~~twwQS~~l~---~g~q~~-~~~~~~~~~  130 (1705)
T KOG1836|consen  105 GETWWQSPPLP---EGHQYN-FVTNLTDLL  130 (1705)
T ss_pred             CCccccCCCCC---cccccc-hhhhhhhcC
Confidence            68999999997   567774 566666554

>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain

Probab=95.87  E-value=0.015  Score=41.81  Aligned_cols=44  Identities=27%  Similarity=0.448  Sum_probs=38.7

Q ss_pred             eeEEeeCCCeEEEEEEEEEeeeCCC----CCCeEEEEEecCCCCCceeeec
Q psy17215          3 FCEGQSYGKKFELTYISLSFCPKSI----KPDSLAIYKSQDFGKSWQPLQF   49 (174)
Q Consensus         3 v~ltldL~~~f~v~~v~l~f~~~sp----rP~s~~iekS~d~G~~W~p~qy   49 (174)
                      ..|+|||++.+.|..|.|.+.  ..    +|..+.|+-|.| |..|.++.=
T Consensus        38 ~~i~idl~~~~~i~~i~i~~~--~~~~~~~~~~~~i~~s~d-g~~w~~~~~   85 (129)
T PF00754_consen   38 QWIQIDLGKPYTISGISIQFR--NDGNNGRPKSFKIEYSND-GSNWTTVAS   85 (129)
T ss_dssp             EEEEEEEEEEEEEEEEEEEEE--SSTTTEEEEEEEEEEESS-SSSEEEEEE
T ss_pred             ceEEEEeeeeEecceeeeccc--ccccceeeeeeeeeeecc-ccccccccc
Confidence            468999999999999999999  44    899999999988 689988764

In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....

>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes

Probab=95.48  E-value=0.012  Score=27.65  Aligned_cols=12  Identities=50%  Similarity=0.938  Sum_probs=9.7

Q ss_pred             EEecCCCCCcee
Q psy17215         35 YKSQDFGKSWQP   46 (174)
Q Consensus        35 ekS~d~G~~W~p   46 (174)
                      ++|.|.|++|++
T Consensus         1 ~~S~D~G~TW~~   12 (12)
T PF02012_consen    1 YYSTDGGKTWKK   12 (12)
T ss_dssp             EEESSTTSS-EE
T ss_pred             CEeCCCcccCcC
Confidence            589999999985

The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....

>cd00057 FA58C Substituted updates: Jan 31, 2002

Probab=95.02  E-value=0.059  Score=40.08  Aligned_cols=44  Identities=23%  Similarity=0.163  Sum_probs=37.6

Q ss_pred             eEEeeCCCeEEEEEEEEEeeeC---CCCCCeEEEEEecCCCCCceeee
Q psy17215          4 CEGQSYGKKFELTYISLSFCPK---SIKPDSLAIYKSQDFGKSWQPLQ   48 (174)
Q Consensus         4 ~ltldL~~~f~v~~v~l~f~~~---sprP~s~~iekS~d~G~~W~p~q   48 (174)
                      -|+|||++.+.|+.|.|+...+   ..++..+.|+-|.| |.+|+++.
T Consensus        47 wi~vDL~~~~~i~~v~i~~~~~~~~~~~~~~~~i~~s~d-g~~W~~~~   93 (143)
T cd00057          47 WLQVDLGKTRRVTGIQTQGRKGGGSSEWVTSYKVQYSLD-GETWTTYK   93 (143)
T ss_pred             eEEEECCCCEEEEEEEEccCCCCCccCeeEEEEEEEECC-CCCEeEEE
Confidence            4899999999999999987621   56788999999999 89999874

>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination

Probab=81.50  E-value=1.4  Score=34.12  Aligned_cols=32  Identities=22%  Similarity=0.361  Sum_probs=21.8

Q ss_pred             CCCCCccccccCCCCCceeecCCCCCCCCCCCCCCCeeEEEE
Q psy17215        129 GRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTL  170 (174)
Q Consensus       129 ~~Hp~~~ltD~~~~~~~TwWQS~~~~~~~~~~~~p~~VtltL  170 (174)
                      ..|.++.|+|.   +..|+|||...       +-|.-++|++
T Consensus        12 n~~~~~~L~D~---~~~tyWQSdG~-------q~pH~I~i~f   43 (131)
T cd08665          12 NPHRANKLTDG---NPKTYWESNGS-------TGSHYINIHM   43 (131)
T ss_pred             CcccHHHhhcC---CCCceEccCCC-------CCCeEEEEEE
Confidence            35788899993   45699999843       3346666654

This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui

>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination

Probab=81.06  E-value=1.1  Score=34.82  Aligned_cols=31  Identities=26%  Similarity=0.372  Sum_probs=21.9

Q ss_pred             CCCCccccccCCCCCceeecCCCCCCCCCCCCCCCeeEEEEe
Q psy17215        130 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLS  171 (174)
Q Consensus       130 ~Hp~~~ltD~~~~~~~TwWQS~~~~~~~~~~~~p~~VtltLd  171 (174)
                      -+++..|+|.   +..|+|||...       + |.-++|+++
T Consensus        17 g~gv~~L~D~---~~~TyWQSDg~-------q-PH~I~i~f~   47 (139)
T cd08366          17 GNGVDQLRDD---SLDTYWQSDGP-------Q-PHLINIQFS   47 (139)
T ss_pred             CCCHHHhcCC---CCCccCCCCCC-------C-CEEEEEEec
Confidence            5789999993   45699999732       2 566666654

This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the

>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination

Probab=80.39  E-value=1.3  Score=34.24  Aligned_cols=19  Identities=37%  Similarity=0.494  Sum_probs=14.8

Q ss_pred             CCCccccccCCCCCceeecCCC
Q psy17215        131 FPAEYLTDLNNPSNVTCWRSEA  152 (174)
Q Consensus       131 Hp~~~ltD~~~~~~~TwWQS~~  152 (174)
                      |.++.|+|.   +..|+|||..
T Consensus        15 ~gv~~L~D~---~~~tyWQSDG   33 (131)
T cd08365          15 ADASRLTDG---NTSTYWQSDG   33 (131)
T ss_pred             hhHHHhhcC---CCCceEccCC
Confidence            478889983   4569999983

This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
4aqt_A	375	Laminin Gamma1 Ln-Le1-2 Structure Length = 375		4e-10
4aqt_A	375	Laminin Gamma1 Ln-Le1-2 Structure Length = 375		3e-06
3zyj_B	426	Netring1 In Complex With Ngl1 Length = 426		7e-06
3zyg_A	353	Netring2 Lam And Egf1 Domains Length = 353		3e-05
3tbd_A	338	Crystal Structure Of Domain Vi And Le1 Of Human Net		3e-05
2y38_A	403	Laminin Alpha5 Chain N-Terminal Fragment Length = 4		2e-04
4aqs_A	525	Laminin Beta1 Ln-Le1-4 Structure Length = 525		3e-04

>pdb|4AQT|A Chain A, Laminin Gamma1 Ln-Le1-2 Structure Length = 375

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 10  GKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVI-SR 68
           GK F++TY+ L F   + +P+S AIYK       W P Q+YS  C+  Y +   G I + 
Sbjct: 109 GKAFDITYVRLKF--HTSRPESFAIYKRTREDGPWIPYQYYSGSCENTYSKANRGFIRTG 166
Query: 69  GNEQEALCTD 78
           G+EQ+ALCTD
Sbjct: 167 GDEQQALCTD 176

>pdb|4AQT|A Chain A, Laminin Gamma1 Ln-Le1-2 Structure Length = 375

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 98  VKVNSVCGLESPERYCDTSG------ACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSE 151
           V   + CG   PE YC  +G      +CH+CDAG    +  A +LTD NN ++ T W+S 
Sbjct: 32  VVATNTCGT-PPEEYCVQTGVTGVTKSCHLCDAGQQHLQHGAAFLTDYNNQADTTWWQS- 89
Query: 152 AQTSVNSLSASPDNVTLTLSLEK 174
            QT +  +   P+++ LTL L K
Sbjct: 90  -QTMLAGVQ-YPNSINLTLHLGK 110

>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1 Length = 426

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 8   SYGKKFELT-YISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGV- 65
           S+ K  ELT  I ++F  +S +PD + + KS D+G++WQP Q+Y++ C   +      V 
Sbjct: 137 SWSKTIELTDNIVITF--ESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVK 194
Query: 66  -ISRGNEQEALCTDRH 80
            +S+    E +CT+ +
Sbjct: 195 DLSQHTVLEIICTEEY 210

>pdb|3ZYG|A Chain A, Netring2 Lam And Egf1 Domains Length = 353

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 8   SYGKKFELTY-ISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGV- 65
           S+ K  ELT  + ++F  +  +P  + + KS D G++WQP QFY+  C + +G +A    
Sbjct: 126 SWNKTVELTDDVVMTF--EYGRPTVMVLEKSLDNGRTWQPYQFYAEDCMEAFGMSARRAR 183
Query: 66  -ISRGNEQEALCTDRHKKQGKGK 87
            +S  +    LCT+ + +    K
Sbjct: 184 DMSSSSAHRVLCTEEYSRWAGSK 206

>pdb|3TBD|A Chain A, Crystal Structure Of Domain Vi And Le1 Of Human Netrin-G2 Length = 338

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 8   SYGKKFELTY-ISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGV- 65
           S+ K  ELT  + ++F  +  +P  + + KS D G++WQP QFY+  C + +G +A    
Sbjct: 109 SWNKTVELTDDVVMTF--EYGRPTVMVLEKSLDNGRTWQPYQFYAEDCMEAFGMSARRAR 166
Query: 66  -ISRGNEQEALCTDRHKKQGKGK 87
            +S  +    LCT+ + +    K
Sbjct: 167 DMSSSSAHRVLCTEEYSRWAGSK 189

>pdb|2Y38|A Chain A, Laminin Alpha5 Chain N-Terminal Fragment Length = 403

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 10  GKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISR- 68
           G+ F + Y+ + F   S +PD   + +S DFG ++QP QF++S  +    R     + R 
Sbjct: 115 GQVFHVAYVLIKFA-NSPRPDLWVLERSTDFGHTYQPWQFFASSKRDCLERFGPRTLERI 173
Query: 69  GNEQEALCTDRHKK 82
             + + +CT  + +
Sbjct: 174 TQDDDVICTTEYSR 187

>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure Length = 525

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/69 (24%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 12  KFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNE 71
           +F  T++ ++F  K+ +P ++ I +S DFGK+W   ++++  C+  +   +TG + + + 
Sbjct: 113 EFHFTHLIMTF--KTFRPAAMLIERSSDFGKAWGVYRYFAYDCESSFPGISTGPMKKVD- 169
Query: 72  QEALCTDRH 80
            + +C  R+
Sbjct: 170 -DIICDSRY 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	2e-17
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	4e-09
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	5e-16
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	7e-14
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	1e-15
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	3e-10
3tbd_A	338	Netrin-G2, laminet-2; laminin N-terminal domain, d	4e-15
3tbd_A	338	Netrin-G2, laminet-2; laminin N-terminal domain, d	3e-12
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	6e-13
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	3e-06

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525

 Score = 77.4 bits (190), Expect = 2e-17
 Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 10  GKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRG 69
             +F  T++ ++F   + +P ++ I +S DFGK+W   ++++  C+  +   +TG +   
Sbjct: 111 EAEFHFTHLIMTFK--TFRPAAMLIERSSDFGKAWGVYRYFAYDCESSFPGISTGPMK-- 166

Query: 70  NEQEALCTDRH 80
              + +C  R+
Sbjct: 167 KVDDIICDSRY 177

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525

 Score = 53.9 bits (129), Expect = 4e-09
 Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 21/90 (23%)

Query: 97  EVKVNSVCGLESPERYCDTSGA-----CHVCDAGSPRGRF-------PAEYLTDLNNPSN 144
           ++ V S CGL  PE YC  S       C +CD+  P               +T       
Sbjct: 32  KLSVTSTCGLHKPEPYCIVSHLQEDKKCFICDSRDPYHETLNPDSHLIENVVTTFAPNRL 91

Query: 145 VTCWRSEAQTSVNSLSASPDNVTLTLSLEK 174
              W+SE            +NVT+ L LE 
Sbjct: 92  KIWWQSE---------NGVENVTIQLDLEA 112

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Length = 375

 Score = 73.7 bits (180), Expect = 5e-16
 Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 10  GKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVI-SR 68
           GK F++TY+ L F   + +P+S AIYK       W P Q+YS  C+  Y +   G I + 
Sbjct: 109 GKAFDITYVRLKFH--TSRPESFAIYKRTREDGPWIPYQYYSGSCENTYSKANRGFIRTG 166

Query: 69  GNEQEALCTDRH 80
           G+EQ+ALCTD  
Sbjct: 167 GDEQQALCTDEF 178

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Length = 375

 Score = 67.1 bits (163), Expect = 7e-14
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 10/84 (11%)

Query: 97  EVKVNSVCGLESPERYCDTSGA------CHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRS 150
            V   + CG   PE YC  +G       CH+CDAG    +  A +LTD NN ++ T W+S
Sbjct: 31  TVVATNTCG-TPPEEYCVQTGVTGVTKSCHLCDAGQQHLQHGAAFLTDYNNQADTTWWQS 89

Query: 151 EAQTSVNSLSASPDNVTLTLSLEK 174
           +   ++ +    P+++ LTL L K
Sbjct: 90  Q---TMLAGVQYPNSINLTLHLGK 110

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 72.2 bits (176), Expect = 1e-15
 Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 8   SYGKKFELT-YISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGV- 65
           S+ K  ELT  I ++F   S +PD + + KS D+G++WQP Q+Y++ C   +      V 
Sbjct: 137 SWSKTIELTDNIVITFE--SGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVK 194

Query: 66  -ISRGNEQEALCTDRH 80
            +S+    E +CT+ +
Sbjct: 195 DLSQHTVLEIICTEEY 210

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 57.2 bits (137), Expect = 3e-10
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 101 NSVCGLESPERYCDTSGA---CHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVN 157
           +  CG + PE +C         + CDA +P    P E + D       T W+S       
Sbjct: 69  DITCG-DPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSA----TW 123

Query: 158 SLSASPDNVTLTLSLEK 174
                P  V +TLS  K
Sbjct: 124 KEYPKPLQVNITLSWSK 140

>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B* Length = 338

 Score = 70.7 bits (172), Expect = 4e-15
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query: 7   QSYGKKFELTY-ISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGV 65
            S+ K  ELT  + ++F     +P  + + KS D G++WQP QFY+  C + +G +A   
Sbjct: 108 LSWNKTVELTDDVVMTFE--YGRPTVMVLEKSLDNGRTWQPYQFYAEDCMEAFGMSARRA 165

Query: 66  --ISRGNEQEALCTDRH 80
             +S  +    LCT+ +
Sbjct: 166 RDMSSSSAHRVLCTEEY 182

>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B* Length = 338

 Score = 62.6 bits (151), Expect = 3e-12
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 97  EVKVNSVCGLESPERYCDTSGA---CHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQ 153
           +V+ + +   + PER+C         + CDA +P    P   + D       T W+S   
Sbjct: 36  KVEPSGITCGDPPERFCSHENPYLCSNECDASNPDLAHPPRLMFDKEEEGLATYWQSITW 95

Query: 154 TSVNSLSASPDNVTLTLSLEK 174
           +       SP    +TLS  K
Sbjct: 96  SRY----PSPLEANITLSWNK 112

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} Length = 403

 Score = 64.5 bits (156), Expect = 6e-13
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 8   SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGR-TATGVI 66
             G+ F + Y+ + F   S +PD   + +S DFG ++QP QF++S  +    R     + 
Sbjct: 113 DLGQVFHVAYVLIKFA-NSPRPDLWVLERSTDFGHTYQPWQFFASSKRDCLERFGPRTLE 171

Query: 67  SRGNEQEALCTDRH 80
               + + +CT  +
Sbjct: 172 RITQDDDVICTTEY 185

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} Length = 403

 Score = 44.9 bits (105), Expect = 3e-06
 Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 32/102 (31%)

Query: 97  EVKVNSVCGLESPER---------YCDTSGA---------------CHVCDAGSPRGRFP 132
            +  ++ CG E+P R         YC   G                C +C A +     P
Sbjct: 23  RITASATCGEEAPTRSVSRPTEDLYCKLVGGPVAGGDPAQTIQGQYCDICTAANSNKAHP 82

Query: 133 AEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLEK 174
                D         W+S       S     + V +TL L +
Sbjct: 83  VSNAIDGTE----RWWQSP----PLSRGLEYNEVNVTLDLGQ 116

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
3tbd_A	338	Netrin-G2, laminet-2; laminin N-terminal domain, d	99.94
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	99.94
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	99.93
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	99.93
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	99.93
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	99.93
3tbd_A	338	Netrin-G2, laminet-2; laminin N-terminal domain, d	99.88
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	99.88
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	99.87
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	99.85
2jda_A	145	Yecbm32; hypothetical protein, carbohydrate- bindi	96.13
4a3z_A	161	GH89_CBM32, alpha-N-acetylglucosaminidase family p	95.8
4a3z_A	161	GH89_CBM32, alpha-N-acetylglucosaminidase family p	95.21
3f2z_A	159	Uncharacterized protein BF3579; the present C-term	95.02
4a42_A	149	GH89_CBM32-4, alpha-N-acetylglucosaminidase family	94.62
3ggl_A	169	Putative chitobiase; X-RAY, structure genomics, NE	94.22
2w1s_A	192	Hyaluronoglucosaminidase; hexosaminidase, family 3	94.04
4a41_A	161	GH89_CBM32-5, alpha-N-acetylglucosaminidase family	94.01
2j1a_A	150	Hyaluronidase, CBM32; protein-carbohydrate interac	94.0
2wuh_A	178	Discoidin domain receptor 2; receptor-peptide comp	92.86
1czt_A	160	Protein (coagulation factor V); membrane-binding,	92.58
3bn6_A	158	Lactadherin; anticoagulation, anti-coagulation, an	92.36
3hnm_A	172	Putative chitobiase; PSI-2, protein structure init	92.22
3cqo_A	293	FBP32; F-lectin, fucolectin, sugar binding protein	91.97
3eyp_A	469	Putative alpha-L-fucosidase; structural genomics,	91.93
2yc2_A	139	IFT25, intraflagellar transport protein 25; transp	91.47
2yc2_A	139	IFT25, intraflagellar transport protein 25; transp	91.18
3lei_A	153	Platelet aggregation factor SM-HPAF; lectin domain	91.12
2qqi_A	318	Neuropilin-1; VEGF receptor, semaphorin receptor,	91.0
1tvg_A	153	LOC51668 protein; cell cycle, structural genomics,	90.79
1tvg_A	153	LOC51668 protein; cell cycle, structural genomics,	90.21
3hny_M	159	Coagulation factor VIII; blood clotting, acute pha	87.91
4gwi_A	153	Lectinolysin, platelet aggregation factor SM-HPAF;	87.78
2qqi_A	318	Neuropilin-1; VEGF receptor, semaphorin receptor,	87.31
2qqj_A	325	Neuropilin-2; VEGF receptor, semaphorin receptor,	87.23
2vm9_A	257	Discoidin-2, discoidin II; DDR, lectin, aggregatio	86.88
4deq_A	218	Neuropilin-1, vascular endothelial growth factor;	86.61
1w8o_A	601	Bacterial sialidase; 3D-structure, glycosidase, hy	85.32
3lei_A	153	Platelet aggregation factor SM-HPAF; lectin domain	85.21
4a41_A	161	GH89_CBM32-5, alpha-N-acetylglucosaminidase family	84.77
2qqj_A	325	Neuropilin-2; VEGF receptor, semaphorin receptor,	84.55
4a4a_A	914	Alpha-N-acetylglucosaminidase family protein; hydr	84.14
4a4a_A	914	Alpha-N-acetylglucosaminidase family protein; hydr	84.02
2qqm_A	450	Neuropilin-1; VEGF receptor, semaphorin receptor,	83.43
2qqo_A	460	Neuropilin-2; VEGF receptor, semaphorin receptor,	81.77
3f2z_A	159	Uncharacterized protein BF3579; the present C-term	81.54
3hnm_A	172	Putative chitobiase; PSI-2, protein structure init	81.04
1k12_A	158	Lectin; beta barrel, protein carbohydrate complex,	80.21

>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*

Probab=99.94  E-value=2.2e-27  Score=206.07  Aligned_cols=81  Identities=30%  Similarity=0.556  Sum_probs=74.7

Q ss_pred             ceeEEeeCCCeEEEE-EEEEEeeeCCCCCCeEEEEEecCCCCCceeeecchhhhhhhcCCCCCCC--cccCCCccccccc
Q psy17215          2 HFCEGQSYGKKFELT-YISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGV--ISRGNEQEALCTD   78 (174)
Q Consensus         2 ~v~ltldL~~~f~v~-~v~l~f~~~sprP~s~~iekS~d~G~~W~p~qyfa~~C~~~Fg~~~~~~--~~~~~~~~~~C~p   78 (174)
                      .|||||||+|+|||+ ||+|+|+  ||||++|+||||+|+|++|+||||||.||.+.|||+++..  +...++++++|++
T Consensus       103 ~VnlTL~L~k~felt~~iil~F~--spRP~sm~ierS~D~G~tW~P~QYfA~dC~~~Fg~~~~~~~~~~~~~~~eviCt~  180 (338)
T 3tbd_A          103 EANITLSWNKTVELTDDVVMTFE--YGRPTVMVLEKSLDNGRTWQPYQFYAEDCMEAFGMSARRARDMSSSSAHRVLCTE  180 (338)
T ss_dssp             CEEEEEEEEEEEEECSCEEEEES--SCCCSEEEEEEESSTTSSCEEEEEEESSHHHHHSCCBCCGGGCCGGGTTCCCEEC
T ss_pred             cceEEEcCCCeEEEEEEEEeecC--CCCCCeEEEEeccCCCCCceeehhhhhhhHHhcCCCCccccCccCCCCCccEECC
Confidence            599999999999999 7999999  9999999999999999999999999999999999998763  3346789999999


Q ss_pred             cccccC
Q psy17215         79 RHKKQG   84 (174)
Q Consensus        79 ~~s~la   84 (174)
                      +|+++.
T Consensus       181 ~yS~~~  186 (338)
T 3tbd_A          181 EYSRWA  186 (338)
T ss_dssp             TTTTTT
T ss_pred             CCCCCC
Confidence            999864

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=99.94  E-value=5e-27  Score=212.29  Aligned_cols=81  Identities=20%  Similarity=0.502  Sum_probs=75.5

Q ss_pred             ceeEEeeCCCeEEEEEEEEEeeeCCCCCCeEEEEEecCCCCCceeeecchhhhhhhcCCCCCCCcccCCCcccccccccc
Q psy17215          2 HFCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHK   81 (174)
Q Consensus         2 ~v~ltldL~~~f~v~~v~l~f~~~sprP~s~~iekS~d~G~~W~p~qyfa~~C~~~Fg~~~~~~~~~~~~~~~~C~p~~s   81 (174)
                      +|||||||+|+|||+||+|+|.  ||||++||||||+|+|++|+||||||.||.++|||+++.++  .+.++|+|+.+|+
T Consensus       103 ~v~itl~l~~~~~~~~v~~~f~--s~rP~~~~ieks~d~g~tw~p~qy~a~~C~~~f~~~~~~~~--~~~~~v~Ct~~~s  178 (525)
T 4aqs_A          103 NVTIQLDLEAEFHFTHLIMTFK--TFRPAAMLIERSSDFGKAWGVYRYFAYDCESSFPGISTGPM--KKVDDIICDSRYS  178 (525)
T ss_dssp             CCEEEEEEEEEEEEEEEEEEES--SCCCSEEEEEEESSTTSSCEEEEEEESSTTTTSSSSCCSCC--SSTTCCCEECTTC
T ss_pred             CeEEEEcCCCeEEEEEEEEEEE--CCCCCeEEEEEecCCCCCCcceeeehhhhhhhcCCCCCCCC--CCCCcceecccCC
Confidence            6999999999999999999999  99999999999999999999999999999999999998776  5578999999999


Q ss_pred             ccCCC
Q psy17215         82 KQGKG   86 (174)
Q Consensus        82 ~la~g   86 (174)
                      ++...
T Consensus       179 ~~~p~  183 (525)
T 4aqs_A          179 DIEPS  183 (525)
T ss_dssp             CSCST
T ss_pred             CCCCC
Confidence            87543

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}

Probab=99.93  E-value=4.5e-27  Score=206.84  Aligned_cols=93  Identities=32%  Similarity=0.629  Sum_probs=84.7

Q ss_pred             CCCccccccccccccCCCcccccccccceeeEeccccCCCCceeeeccC------cccccCCCCCCCCCCCccccccCCC
Q psy17215         69 GNEQEALCTDRHKKQGKGKMSRRRTNCQEVKVNSVCGLESPERYCDTSG------ACHVCDAGSPRGRFPAEYLTDLNNP  142 (174)
Q Consensus        69 ~~~~~~~C~p~~s~la~g~~~~~~~~~~~v~assTCG~~~pe~~C~~~~------~C~~Cd~~~p~~~Hp~~~ltD~~~~  142 (174)
                      .+.....|+|++.|||+|+         +|.|+|||| .+||+||++++      +|++||+++|+++||+++|||.++.
T Consensus        12 ~~~~p~~C~P~~~N~a~~~---------~i~assTCG-~~pe~yC~~~~~~~~~~~C~~Cda~~p~~~Hp~~~~~D~~~~   81 (375)
T 4aqt_A           12 EGGRPQRCMPEFVNAAFNV---------TVVATNTCG-TPPEEYCVQTGVTGVTKSCHLCDAGQQHLQHGAAFLTDYNNQ   81 (375)
T ss_dssp             TTCCBCCCCCCCEETTTTC---------CCEESCCTT-SSCEEEECCC----CCCCEEEECSSSTTTCCCGGGGSSCCCS
T ss_pred             CCCCcCccCCchhhhccCC---------eeeEecCCC-CCCcCeEEecCCcccCCcCCccCCCChhhhCCHhheeccCCC
Confidence            3456788999999999999         999999999 58999999863      6999999999999999999999999


Q ss_pred             CCceeecCCCCCCCCCCCCCCCeeEEEEeCCC
Q psy17215        143 SNVTCWRSEAQTSVNSLSASPDNVTLTLSLEK  174 (174)
Q Consensus       143 ~~~TwWQS~~~~~~~~~~~~p~~VtltLdLgk  174 (174)
                      ++.|||||+++.   .+.++|++|||||||||
T Consensus        82 ~~~TwWQS~~~~---~~~~~~~~VtitLdL~~  110 (375)
T 4aqt_A           82 ADTTWWQSQTML---AGVQYPNSINLTLHLGK  110 (375)
T ss_dssp             SSCCCEECCCGG---GTCSSSCCEEEEEEEEE
T ss_pred             CCCceEECCCcc---ccCCCCcceEEEEcCCC
Confidence            999999999987   46788899999999986

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.2e-26  Score=206.74  Aligned_cols=82  Identities=30%  Similarity=0.573  Sum_probs=75.4

Q ss_pred             ceeEEeeCCCeEEEE-EEEEEeeeCCCCCCeEEEEEecCCCCCceeeecchhhhhhhcCCCCCCC--cccCCCccccccc
Q psy17215          2 HFCEGQSYGKKFELT-YISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGV--ISRGNEQEALCTD   78 (174)
Q Consensus         2 ~v~ltldL~~~f~v~-~v~l~f~~~sprP~s~~iekS~d~G~~W~p~qyfa~~C~~~Fg~~~~~~--~~~~~~~~~~C~p   78 (174)
                      +|||||||+++|||+ ||+|+|+  ||||++|+||||+|+|++|+||||||.||.++|||+++..  +...++++++|++
T Consensus       131 ~V~itLdL~~~f~~t~~i~l~F~--spRP~am~ierS~D~G~tW~p~qYfA~dC~~~Fg~~~~~~~~~~~~~~~~viCt~  208 (426)
T 3zyj_B          131 QVNITLSWSKTIELTDNIVITFE--SGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTE  208 (426)
T ss_dssp             CEEEEEEEEEEEEECSCEEEEES--SCCCSEEEEEEESSTTSSCEEEEEEESSHHHHTSCCCCCGGGCCSSCSSCCCEEC
T ss_pred             ceeEEEcCCCcEEEEEEEEeecC--CCCCCeEEEEeccCCCCCceehHHHhhhhHHhcCCCcccccccCCCCCCcceeCC
Confidence            699999999999999 7999999  9999999999999999999999999999999999998753  4456789999999


Q ss_pred             cccccCC
Q psy17215         79 RHKKQGK   85 (174)
Q Consensus        79 ~~s~la~   85 (174)
                      +|+++..
T Consensus       209 ~yS~~~P  215 (426)
T 3zyj_B          209 EYSTGYT  215 (426)
T ss_dssp             TTTCSSS
T ss_pred             CCCCCCC
Confidence            9998754

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}

Probab=99.93  E-value=2.5e-26  Score=203.61  Aligned_cols=79  Identities=27%  Similarity=0.601  Sum_probs=73.7

Q ss_pred             ceeEEeeCCCeEEEEEEEEEeeeCCCCCCeEEEEEecCCCCCceeeecchh---hhhhhcCCCCCCCcccCCCccccccc
Q psy17215          2 HFCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSS---QCKKLYGRTATGVISRGNEQEALCTD   78 (174)
Q Consensus         2 ~v~ltldL~~~f~v~~v~l~f~~~sprP~s~~iekS~d~G~~W~p~qyfa~---~C~~~Fg~~~~~~~~~~~~~~~~C~p   78 (174)
                      +|||||||+++|||+||+|+|+ +||||++|+||||+|+|++|+||||||.   ||.++|||+++..+  .+.++++|++
T Consensus       107 ~V~itLdL~~~f~~t~v~l~F~-~spRP~~m~ierS~D~G~tW~p~qyfa~~~~dC~~~fg~~~~~~~--~~~~~viCt~  183 (403)
T 2y38_A          107 EVNVTLDLGQVFHVAYVLIKFA-NSPRPDLWVLERSTDFGHTYQPWQFFASSKRDCLERFGPRTLERI--TQDDDVICTT  183 (403)
T ss_dssp             CCEEEEEEEEEEEEEEEEEEEC-SSCCCSEEEEEEESSSSSSEEEEEEECSSHHHHHHHTCTTTTSCC--CSTTCCCEEC
T ss_pred             cceeEEeCCCcEEEEEEEEEec-CCCCCCeEEEEeccCCCCCccceecccCCccchhhhcCCCCCCCC--CCCCceeeec
Confidence            6999999999999999999997 6999999999999999999999999997   99999999988776  4467999999


Q ss_pred             ccccc
Q psy17215         79 RHKKQ   83 (174)
Q Consensus        79 ~~s~l   83 (174)
                      +|+++
T Consensus       184 ~ys~~  188 (403)
T 2y38_A          184 EYSRI  188 (403)
T ss_dssp             STTCS
T ss_pred             cCCCC
Confidence            99976

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}

Probab=99.93  E-value=5.3e-26  Score=200.02  Aligned_cols=81  Identities=37%  Similarity=0.740  Sum_probs=76.2

Q ss_pred             ceeEEeeCCCeEEEEEEEEEeeeCCCCCCeEEEEEecCCCCCceeeecchhhhhhhcCCCCCCCcc-cCCCccccccccc
Q psy17215          2 HFCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVIS-RGNEQEALCTDRH   80 (174)
Q Consensus         2 ~v~ltldL~~~f~v~~v~l~f~~~sprP~s~~iekS~d~G~~W~p~qyfa~~C~~~Fg~~~~~~~~-~~~~~~~~C~p~~   80 (174)
                      +|||||||+++|||+||+|+|+  ++||++|+||||+|+|++|+||||||.+|.+.|+|++++.+. ..++++++|+.+|
T Consensus       101 ~VtitLdL~~~f~~t~v~i~F~--~~rP~~m~Iers~d~G~tw~p~qyfa~~C~~~f~~~~~~~~~~~~~~~~viCt~~y  178 (375)
T 4aqt_A          101 SINLTLHLGKAFDITYVRLKFH--TSRPESFAIYKRTREDGPWIPYQYYSGSCENTYSKANRGFIRTGGDEQQALCTDEF  178 (375)
T ss_dssp             CEEEEEEEEEEEEEEEEEEEES--SSCCSEEEEEEESSSSSCCEEEEEEETTHHHHHSCCTTCCCCTTSCTTCCEEESTT
T ss_pred             ceEEEEcCCCeEEEEEEEEEec--CCCCCcEEEEEecCCCCCccceeeeecchhHhcCCCCCCCcCCCCCCCeeEeCCcC
Confidence            6999999999999999999999  999999999999999999999999999999999999988764 4778999999999


Q ss_pred             cccC
Q psy17215         81 KKQG   84 (174)
Q Consensus        81 s~la   84 (174)
                      +++.
T Consensus       179 s~~~  182 (375)
T 4aqt_A          179 SDIS  182 (375)
T ss_dssp             CSCC
T ss_pred             CCCc
Confidence            9874

>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*

Probab=99.88  E-value=1.1e-23  Score=182.91  Aligned_cols=90  Identities=29%  Similarity=0.481  Sum_probs=80.8

Q ss_pred             CccccccccccccCCCcccccccccceeeE---eccccCCCCceeeeccC--cc-cccCCCCCCCCCCCccccccCCCCC
Q psy17215         71 EQEALCTDRHKKQGKGKMSRRRTNCQEVKV---NSVCGLESPERYCDTSG--AC-HVCDAGSPRGRFPAEYLTDLNNPSN  144 (174)
Q Consensus        71 ~~~~~C~p~~s~la~g~~~~~~~~~~~v~a---ssTCG~~~pe~~C~~~~--~C-~~Cd~~~p~~~Hp~~~ltD~~~~~~  144 (174)
                      .+...|.|++.|||.|+         .+.+   ++|||. +||+||.+.+  .| ++||+++|+++||+++|||.++.++
T Consensus        17 ~~~~~C~P~~~nla~~~---------~~~~~~~~sTCG~-~pe~yC~~~~~~~C~~~CDa~~p~~aHP~~~ltD~~~~~~   86 (338)
T 3tbd_A           17 WEFYACQPKVMRLKDYV---------KVKVEPSGITCGD-PPERFCSHENPYLCSNECDASNPDLAHPPRLMFDKEEEGL   86 (338)
T ss_dssp             EEECCBCCCCEEGGGGC---------EEEEESTTCBSCS-SCEEECCSSCCSSCCEEECTTSTTTCCCGGGGSSCCCTTC
T ss_pred             ccccccCCCccchhcCe---------eEEeccCCCCcCc-ChhhheecCCcccccccccCCCccccCCHHHhccCCCCCC
Confidence            45678999999999999         8887   799995 8999999875  57 6999999999999999999999999


Q ss_pred             ceeecCCCCCCCCCCCCCCCeeEEEEeCCC
Q psy17215        145 VTCWRSEAQTSVNSLSASPDNVTLTLSLEK  174 (174)
Q Consensus       145 ~TwWQS~~~~~~~~~~~~p~~VtltLdLgk  174 (174)
                      .|||||+++.    +.+.|.+|||||||||
T Consensus        87 ~TwWQS~~~~----~~~~p~~VnlTL~L~k  112 (338)
T 3tbd_A           87 ATYWQSITWS----RYPSPLEANITLSWNK  112 (338)
T ss_dssp             CCCEEBCCST----TTTSCCCEEEEEEEEE
T ss_pred             CceeccCccc----CCCCCccceEEEcCCC
Confidence            9999999986    3456789999999986

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.88  E-value=2.3e-23  Score=185.65  Aligned_cols=90  Identities=29%  Similarity=0.519  Sum_probs=76.7

Q ss_pred             CccccccccccccCCCcccccccccceee---EeccccCCCCceeeeccC--cc-cccCCCCCCCCCCCccccccCCCCC
Q psy17215         71 EQEALCTDRHKKQGKGKMSRRRTNCQEVK---VNSVCGLESPERYCDTSG--AC-HVCDAGSPRGRFPAEYLTDLNNPSN  144 (174)
Q Consensus        71 ~~~~~C~p~~s~la~g~~~~~~~~~~~v~---assTCG~~~pe~~C~~~~--~C-~~Cd~~~p~~~Hp~~~ltD~~~~~~  144 (174)
                      .+...|.|++.|+|+|+         +|.   |+|||| ++||+||++..  +| ++||+++|+++||+++|||.++.++
T Consensus        45 ~~~~~C~P~~~n~a~~~---------~v~~~~assTCG-~~pe~yC~~~~~~~C~~~Cda~~p~~aHp~~~~tD~~~~~~  114 (426)
T 3zyj_B           45 WDYMACQPESTDMTKYL---------KVKLDPPDITCG-DPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHP  114 (426)
T ss_dssp             EEEBCCCCCCEEGGGTC---------EEEEESGGGBSC-SSCEECCCSSCTTCCCCEECSSSTTTCCCGGGGGSCC----
T ss_pred             CcCccCCCcHHhHhcCC---------eeeeeccCcccC-CCccceeeccCCCcccCcccCCCccccCCHHHeecCCCCCC
Confidence            34588999999999999         777   599999 58999999864  89 9999999999999999999999999


Q ss_pred             ceeecCCCCCCCCCCCCCCCeeEEEEeCCC
Q psy17215        145 VTCWRSEAQTSVNSLSASPDNVTLTLSLEK  174 (174)
Q Consensus       145 ~TwWQS~~~~~~~~~~~~p~~VtltLdLgk  174 (174)
                      .|||||+++.    ..+.|++|||||||||
T Consensus       115 ~twWQS~~~~----~~~~p~~V~itLdL~~  140 (426)
T 3zyj_B          115 STFWQSATWK----EYPKPLQVNITLSWSK  140 (426)
T ss_dssp             CCCEEBCCCC----SCSSCCCEEEEEEEEE
T ss_pred             CceecCCccc----CCCCccceeEEEcCCC
Confidence            9999999986    3456689999999986

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}

Probab=99.87  E-value=3.7e-23  Score=183.36  Aligned_cols=88  Identities=20%  Similarity=0.404  Sum_probs=52.3

Q ss_pred             CCccccccccccccCCCcccccccccceeeEeccccCCCC---------ceeeecc---------------CcccccCCC
Q psy17215         70 NEQEALCTDRHKKQGKGKMSRRRTNCQEVKVNSVCGLESP---------ERYCDTS---------------GACHVCDAG  125 (174)
Q Consensus        70 ~~~~~~C~p~~s~la~g~~~~~~~~~~~v~assTCG~~~p---------e~~C~~~---------------~~C~~Cd~~  125 (174)
                      ......|+|.+.|+|+|+         +|.|+||||+++|         |+||++.               .+|++||++
T Consensus         5 ~~~~~~c~P~~~Nla~~~---------~i~assTCG~~~~~~~~~~p~~e~yC~~~~~~~~~~~~~~~~~~~~C~~Cda~   75 (403)
T 2y38_A            5 GGDGFSLHPPYFNLAEGA---------RITASATCGEEAPTRSVSRPTEDLYCKLVGGPVAGGDPAQTIQGQYCDICTAA   75 (403)
T ss_dssp             ---CCCBCCCCEETTTTC---------EEEESSCC---------------------------------------------
T ss_pred             cccCCccCCcccccccCC---------eeEEEeCCCCCCCCccccCCcccccceeccCCcccccccccccCCccCccCCC
Confidence            356889999999999999         9999999999776         9999873               269999999


Q ss_pred             CCCCCCCCccccccCCCCCceeecCCCCCCCCCCCCCCCeeEEEEeCCC
Q psy17215        126 SPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLEK  174 (174)
Q Consensus       126 ~p~~~Hp~~~ltD~~~~~~~TwWQS~~~~~~~~~~~~p~~VtltLdLgk  174 (174)
                      +|.++||+++|||    ++.|||||+++..   +.+ +++|||||||||
T Consensus        76 ~p~~~Hp~~~~~D----~~~twWQS~~~~~---g~~-~~~V~itLdL~~  116 (403)
T 2y38_A           76 NSNKAHPVSNAID----GTERWWQSPPLSR---GLE-YNEVNVTLDLGQ  116 (403)
T ss_dssp             -----CCGGGTTS----SSSCCEECCCSTT---CSS-TTCCEEEEEEEE
T ss_pred             CccccCcHHHhcc----CCceeeccCCccC---CCc-cccceeEEeCCC
Confidence            9999999999999    4579999999862   333 379999999986

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=99.85  E-value=2.4e-22  Score=181.66  Aligned_cols=90  Identities=31%  Similarity=0.516  Sum_probs=75.8

Q ss_pred             CCCccccccccccccCCCcccccccccceeeEeccccCCCCceeeeccC-----cccccCCCCC--CCCCCCccccccC-
Q psy17215         69 GNEQEALCTDRHKKQGKGKMSRRRTNCQEVKVNSVCGLESPERYCDTSG-----ACHVCDAGSP--RGRFPAEYLTDLN-  140 (174)
Q Consensus        69 ~~~~~~~C~p~~s~la~g~~~~~~~~~~~v~assTCG~~~pe~~C~~~~-----~C~~Cd~~~p--~~~Hp~~~ltD~~-  140 (174)
                      ....+..|+|++.|||+||..       +|.|+||||+++||+||+++.     +|++||+++|  .++||+++|+|.. 
T Consensus        11 ~~~~~~~c~p~~~n~~~~~~~-------~~~~~~tCG~~~~e~~c~~~~~~~~~~c~~Cd~~~p~~~~~hp~~~~~~~~~   83 (525)
T 4aqs_A           11 YGCAEGSCYPATGDLLIGRAQ-------KLSVTSTCGLHKPEPYCIVSHLQEDKKCFICDSRDPYHETLNPDSHLIENVV   83 (525)
T ss_dssp             -CGGGSCBCCCCEESSTTCGG-------GEECSCCTTSSSCEEEEEECSSSSCEEEEEECCSSCCBTTTBTTCCCGGGSS
T ss_pred             cCCCCCCcCCCchhhhcCCCC-------cEEEecCCCCCCCcceeccCCCCCCCcCCcCcCCCCcccccCChhhcccccc
Confidence            446788999999999999933       799999999999999998763     7999999998  5789999998743 


Q ss_pred             ----CCCCceeecCCCCCCCCCCCCCCCeeEEEEeCCC
Q psy17215        141 ----NPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLEK  174 (174)
Q Consensus       141 ----~~~~~TwWQS~~~~~~~~~~~~p~~VtltLdLgk  174 (174)
                          ..+..|||||+++.         ++|||||||+|
T Consensus        84 ~~~~~~~~~~wwqs~~~~---------~~v~itl~l~~  112 (525)
T 4aqs_A           84 TTFAPNRLKIWWQSENGV---------ENVTIQLDLEA  112 (525)
T ss_dssp             CC-----CCCCEECCTTC---------CCCEEEEEEEE
T ss_pred             ccccCCCCcccccCCCCC---------cCeEEEEcCCC
Confidence                34567999999874         79999999986

>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A

Probab=96.13  E-value=0.0084  Score=43.66  Aligned_cols=44  Identities=25%  Similarity=0.378  Sum_probs=37.8

Q ss_pred             eEEeeCCCeEEEEEEEEEeeeCCCCCCeEEEEEecCCCCCceeee
Q psy17215          4 CEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQ   48 (174)
Q Consensus         4 ~ltldL~~~f~v~~v~l~f~~~sprP~s~~iekS~d~G~~W~p~q   48 (174)
                      -|+|||++.+.|..|.|++.....+|..+.|+-|.| |.+|.++.
T Consensus        45 ~l~vDLg~~~~v~~v~i~~~~~~~~~~~~~i~~S~D-g~~w~~~~   88 (145)
T 2jda_A           45 WVQLELDKEQSIENILIVPFKPTERKLKFSIFYSND-GKNWQPLA   88 (145)
T ss_dssp             EEEEEEEEEEEEEEEEEEESSTTTCCEEEEEEEESS-SSSCEEEE
T ss_pred             eEEEECCCceEEEEEEEEeccCCCceEEEEEEEeCC-CCceEEee
Confidence            589999999999999999972234899999999988 88999875

>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein; hydrolase, family 32 carbohydrate-binding module; HET: MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A*

Probab=95.80  E-value=0.0052  Score=47.31  Aligned_cols=53  Identities=19%  Similarity=0.183  Sum_probs=37.8

Q ss_pred             cccccccCCCcccccccccceeeEeccccCCCCceeeeccCcccccCCCCCCCCCCCccccccCCCCCceeecCCCCCCC
Q psy17215         77 TDRHKKQGKGKMSRRRTNCQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSV  156 (174)
Q Consensus        77 ~p~~s~la~g~~~~~~~~~~~v~assTCG~~~pe~~C~~~~~C~~Cd~~~p~~~Hp~~~ltD~~~~~~~TwWQS~~~~~~  156 (174)
                      .+.+.|||.|+         ++.|+|+-+                        .+++++++|-   +..|+|.|....  
T Consensus        23 ~~~~~NLA~~k---------~ataSs~~~------------------------~~~a~~AvDG---n~~T~W~s~~~~--   64 (161)
T 4a3z_A           23 SANYVNIAENK---------NVSGSNSQS------------------------GNPLSNITDG---DLSSLWISDNGA--   64 (161)
T ss_dssp             ---CCBTTTTC---------CEEESCBCT------------------------TCCGGGGSSS---CTTCCEEBGGGC--
T ss_pred             CCCcccccCCC---------ceEEeCCcC------------------------CCChhhcCcC---CCCCeEEcCCCC--
Confidence            45678999999         888887654                        2678899994   456999987542  


Q ss_pred             CCCCCCCCeeEEEEeCCC
Q psy17215        157 NSLSASPDNVTLTLSLEK  174 (174)
Q Consensus       157 ~~~~~~p~~VtltLdLgk  174 (174)
                             ..--|+||||+
T Consensus        65 -------~~~Wi~VDLg~   75 (161)
T 4a3z_A           65 -------MPANATIDLEG   75 (161)
T ss_dssp             -------SSEEEEEEEEE
T ss_pred             -------CCeEEEEECCC
Confidence                   35678888874

>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein; hydrolase, family 32 carbohydrate-binding module; HET: MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A*

Probab=95.21  E-value=0.026  Score=43.30  Aligned_cols=44  Identities=7%  Similarity=-0.012  Sum_probs=36.7

Q ss_pred             eeEEeeCCCeEEEEEEEEEeeeCCCCCCeEEEEEecCCCCCceeee
Q psy17215          3 FCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQ   48 (174)
Q Consensus         3 v~ltldL~~~f~v~~v~l~f~~~sprP~s~~iekS~d~G~~W~p~q   48 (174)
                      --|+||||+.+.|..|.|.|. ...+.....||-|.| |.+|+..-
T Consensus        67 ~Wi~VDLg~~~~v~~v~i~~~-~~~~~~~y~IevS~D-g~~W~~v~  110 (161)
T 4a3z_A           67 ANATIDLEGNNFVDFLELHFE-KEGFRFQFKVEVEDE-SGNRETVL  110 (161)
T ss_dssp             EEEEEEEEEEEEEEEEEEECS-STTCCEEEEEEEECT-TCCEEEEE
T ss_pred             eEEEEECCCcEEEeEEEEEEC-CCCceEEEEEEEEcC-CCCEEEEE
Confidence            358999999999999999998 233567899999977 88998763

>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A

Probab=95.02  E-value=0.057  Score=40.33  Aligned_cols=45  Identities=13%  Similarity=0.217  Sum_probs=37.9

Q ss_pred             eeEEeeCCCeEEEEEEEEEeeeC--CCCCCeEEEEEecCCCCCceeee
Q psy17215          3 FCEGQSYGKKFELTYISLSFCPK--SIKPDSLAIYKSQDFGKSWQPLQ   48 (174)
Q Consensus         3 v~ltldL~~~f~v~~v~l~f~~~--sprP~s~~iekS~d~G~~W~p~q   48 (174)
                      .-|+|||++.+.|..|.+.....  ..+|..+.|+-|.| |.+|+.+.
T Consensus        55 ~~i~vDLg~~~~i~~v~~~~~~~~~~~~~~~~~I~~S~D-g~~W~~v~  101 (159)
T 3f2z_A           55 YEIIIDMNHRVKIAQIELLPRGRGSNNPIKVVRFEASED-GTNWESIG  101 (159)
T ss_dssp             EEEEEEEEEEEEEEEEEEEECCTTCCCCCCEEEEEEESS-SSSCEEEE
T ss_pred             EEEEEECCCceEEEEEEEEecCCCCCCCeeEEEEEEEcC-CCCeEEeE
Confidence            46999999999999999987621  35899999999988 89999865

>4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: MSE; 1.55A {Clostridium perfringens}

Probab=94.62  E-value=0.036  Score=41.62  Aligned_cols=40  Identities=20%  Similarity=0.289  Sum_probs=35.5

Q ss_pred             EEeeCCCeEEEEEEEEEeeeCCCCCCeEEEEEecCCCCCceee
Q psy17215          5 EGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPL   47 (174)
Q Consensus         5 ltldL~~~f~v~~v~l~f~~~sprP~s~~iekS~d~G~~W~p~   47 (174)
                      ++|||++.+.|..|.+++.  ...+....|+-|.| |.+|+.+
T Consensus        65 ~~VDLg~~~~V~~v~i~~~--r~~v~~y~I~~S~D-G~~W~~~  104 (149)
T 4a42_A           65 VTFDLSKEKDISAIDIVSK--GNSPLKYSIEISND-GTEWTKI  104 (149)
T ss_dssp             EEEEEEEEEECCEEEEEEC--SSSCCCEEEEEESS-SSSCEEE
T ss_pred             EEEECCCcEEEEEEEEEcC--CCCcEEEEEEEEcC-CCeEeEe
Confidence            5899999999999999877  56688999999988 8999885

>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron}

Probab=94.22  E-value=0.11  Score=39.43  Aligned_cols=45  Identities=11%  Similarity=0.199  Sum_probs=37.9

Q ss_pred             eeEEeeCCCeEEEEEEEEEeeeC--CCCCCeEEEEEecCCCCCceeee
Q psy17215          3 FCEGQSYGKKFELTYISLSFCPK--SIKPDSLAIYKSQDFGKSWQPLQ   48 (174)
Q Consensus         3 v~ltldL~~~f~v~~v~l~f~~~--sprP~s~~iekS~d~G~~W~p~q   48 (174)
                      .-|+|||++.+.|..|.+.....  ..+|..+-|+-|.| |.+|+.+.
T Consensus        65 ~wi~vDLg~~~~i~~v~~~~r~~~~~~~~~~y~I~~S~D-g~~W~~v~  111 (169)
T 3ggl_A           65 YDIVIDMKQNIQIAQVELLPRGRGSNNPIKVVEFAASED-NVNWTPIG  111 (169)
T ss_dssp             EEEEEEEEEEEEEEEEEEEECCTTCCCCCCEEEEEEESS-SSCCEEEE
T ss_pred             EEEEEECCCcEEEeEEEEEecCCCCCCCeeEEEEEEeCC-CCCcEEeE
Confidence            46999999999999999877621  36899999999988 89999865

>2w1s_A Hyaluronoglucosaminidase; hexosaminidase, family 32 carbohydrate binding module, toxin, secreted, virulence, hydrolase, glycosidase; HET: MSE BTB; 1.45A {Clostridium perfringens} PDB: 2w1q_A* 2w1u_A* 2wdb_A*

Probab=94.04  E-value=0.088  Score=41.40  Aligned_cols=46  Identities=26%  Similarity=0.266  Sum_probs=37.3

Q ss_pred             eEEeeCCCeEEEEEE-EEEeeeC---CCCCCeEEEEEecCCCCCceeeecc
Q psy17215          4 CEGQSYGKKFELTYI-SLSFCPK---SIKPDSLAIYKSQDFGKSWQPLQFY   50 (174)
Q Consensus         4 ~ltldL~~~f~v~~v-~l~f~~~---sprP~s~~iekS~d~G~~W~p~qyf   50 (174)
                      -|+|||++...|+.| +++..+.   .....+..|+-|.| |.+|.+|.-.
T Consensus        67 wLQVDLg~~~~VtgV~~tQG~~~~~~~~~vt~Y~l~yS~D-G~~W~~~~~~  116 (192)
T 2w1s_A           67 FIGLDLGKEIKLDGIRFVIGKNGGGSSDKWNKFKLEYSLD-NESWTTIKEY  116 (192)
T ss_dssp             EEEEEEEEEEEEEEEEEEECCSSTTTTCCCSEEEEEEESS-SSSCEEEEEE
T ss_pred             eEEEECCCeEEEEEEEEEcCCCCCCCCCeEEEEEEEEEcC-CCCeEEEecC
Confidence            389999999999999 7776533   24667899999998 8999998754

>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A*

Probab=94.01  E-value=0.074  Score=40.17  Aligned_cols=45  Identities=11%  Similarity=0.146  Sum_probs=36.9

Q ss_pred             eeEEeeCCCeEEEEEEEEEeeeC--CCCCCeEEEEEecCCCCCceeee
Q psy17215          3 FCEGQSYGKKFELTYISLSFCPK--SIKPDSLAIYKSQDFGKSWQPLQ   48 (174)
Q Consensus         3 v~ltldL~~~f~v~~v~l~f~~~--sprP~s~~iekS~d~G~~W~p~q   48 (174)
                      .-|+|||++.+.|..|.++....  ..+|..+-|+-|.| |.+|+.+.
T Consensus        71 ~~i~iDLg~~~~I~~v~~~~r~~~~~~~~~~y~I~~S~D-G~~W~~v~  117 (161)
T 4a41_A           71 QSITLELGGSYEINKFTYLPRSGAKNGNITKYELHVSED-GNNFRKIS  117 (161)
T ss_dssp             EEEEEEEEEEEEEEEEEEECCSSCCTTCEEEEEEEEESS-SSCEEEEE
T ss_pred             EEEEEEcCCCEEEeEEEEEecCCCCCCcEEEEEEEEECC-CCceEEee
Confidence            56999999999999999876511  35788899999987 89999864

>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside hydrolase, GH84C, hydrolase; HET: GAL; 1.49A {Clostridium perfringens} PDB: 2j1e_A* 2j7m_A*

Probab=94.00  E-value=0.053  Score=39.13  Aligned_cols=44  Identities=9%  Similarity=0.123  Sum_probs=36.4

Q ss_pred             eeEEeeCCCeEEEEEEEEEeeeC--CCCCCeEEEEEecCCCCCceee
Q psy17215          3 FCEGQSYGKKFELTYISLSFCPK--SIKPDSLAIYKSQDFGKSWQPL   47 (174)
Q Consensus         3 v~ltldL~~~f~v~~v~l~f~~~--sprP~s~~iekS~d~G~~W~p~   47 (174)
                      .-|+|||++.+.|..|.+++...  ..+|..+.|+-|.| |.+|...
T Consensus        53 ~~l~iDLg~~~~i~~v~~~~~~~~~~~~~~~~~i~~S~D-g~~w~~v   98 (150)
T 2j1a_A           53 HHLTLELDNVYEINKVKYAPRQDSKNGRITGYKVSVSLD-GENFTEV   98 (150)
T ss_dssp             CEEEEEEEEEEEEEEEEEECCSSCCTTEEEEEEEEEESS-SSSEEEE
T ss_pred             eEEEEECCCCeEEeEEEEeecCCCCCCCEEEEEEEEEcC-CCceEEE
Confidence            46999999999999999987621  34678999999987 8899974

>2wuh_A Discoidin domain receptor 2; receptor-peptide complex, transferase, nucleotide-binding, tyrosine-protein kinase; 1.60A {Homo sapiens} PDB: 2z4f_A

Probab=92.86  E-value=0.17  Score=39.25  Aligned_cols=43  Identities=14%  Similarity=0.042  Sum_probs=35.7

Q ss_pred             EEeeCCCeEEEEEEEEEeeeC----CCCCCeEEEEEecCCCCCceeee
Q psy17215          5 EGQSYGKKFELTYISLSFCPK----SIKPDSLAIYKSQDFGKSWQPLQ   48 (174)
Q Consensus         5 ltldL~~~f~v~~v~l~f~~~----sprP~s~~iekS~d~G~~W~p~q   48 (174)
                      |+|||++...|+-|.++..+.    ..-..+..|+-|.| |.+|.+|.
T Consensus        75 LQVDLg~~~~VtgV~tQG~~~~~~~~~~vt~Y~l~yS~D-g~~W~~y~  121 (178)
T 2wuh_A           75 LQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKINYSRD-GTRWISWR  121 (178)
T ss_dssp             EEEEEEEEEEEEEEEEECCCGGGTCCCCCSEEEEEEESS-SSSCEECC
T ss_pred             EEEecCCceEEeEEEEecccCCCCccceeEEEEEEEEcC-CCcEEEEe
Confidence            899999999999999998622    13457789999999 79999876

>1czt_A Protein (coagulation factor V); membrane-binding, discoidin family, calcium- independent, blood clotting; 1.87A {Homo sapiens} SCOP: b.18.1.2 PDB: 1czs_A 1czv_A

Probab=92.58  E-value=0.082  Score=40.08  Aligned_cols=43  Identities=23%  Similarity=0.281  Sum_probs=34.1

Q ss_pred             EEeeCCCeEEEEEEEEEeeeC---CCCCCeEEEEEecCCCCCceeee
Q psy17215          5 EGQSYGKKFELTYISLSFCPK---SIKPDSLAIYKSQDFGKSWQPLQ   48 (174)
Q Consensus         5 ltldL~~~f~v~~v~l~f~~~---sprP~s~~iekS~d~G~~W~p~q   48 (174)
                      |+|||++...|+.|.++..+.   .....+..|+-|.| |.+|.+|.
T Consensus        59 LqVDLg~~~~Vt~v~tqG~~~~~~~~~v~~y~l~yS~D-g~~W~~~~  104 (160)
T 1czt_A           59 LEIDLLKIKKITAIITQGCKSLSSEMYVKSYTIHYSEQ-GVEWKPYR  104 (160)
T ss_dssp             EEEEEEEEEEEEEEEEECEEETTEEEEEEEEEEEEESS-SSSCEECC
T ss_pred             EEEeCCCcEEEEEEEEeCcCCCCcccEEEEEEEEEECC-CCcEEEEE
Confidence            899999999999999998621   12335677899988 89999875

>3bn6_A Lactadherin; anticoagulation, anti-coagulation, anticoagulant, anti- coagulant, membrane binding, phosphatidyl-serine binding; 1.67A {Bos taurus} PDB: 2pqs_A

Probab=92.36  E-value=0.091  Score=39.61  Aligned_cols=44  Identities=14%  Similarity=0.077  Sum_probs=34.5

Q ss_pred             EEeeCCCeEEEEEEEEEeeeCC---CCCCeEEEEEecCCCCCceeeec
Q psy17215          5 EGQSYGKKFELTYISLSFCPKS---IKPDSLAIYKSQDFGKSWQPLQF   49 (174)
Q Consensus         5 ltldL~~~f~v~~v~l~f~~~s---prP~s~~iekS~d~G~~W~p~qy   49 (174)
                      |+|||++...|+.|.++..+..   ....+..|+-|.| |.+|.+|.-
T Consensus        60 lqVDLg~~~~vt~v~tqg~~~~~~~~~v~~y~i~~S~D-g~~W~~~~~  106 (158)
T 3bn6_A           60 LQIDLGSQKRVTGIITQGARDFGHIQYVAAYRVAYGDD-GVTWTEYKD  106 (158)
T ss_dssp             EEEEEEEEEEEEEEEEECEEETTEEEEEEEEEEEEESS-SSSCEECCC
T ss_pred             EEEeCCCceEEEEEEeeCCCCCCCCceEEEEEEEEECC-CCceEEEEc
Confidence            8999999999999999876211   1345677899988 899998753

>3hnm_A Putative chitobiase; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, BTR319D.BT_411; 3.00A {Bacteroides thetaiotaomicron}

Probab=92.22  E-value=0.2  Score=38.78  Aligned_cols=48  Identities=15%  Similarity=0.156  Sum_probs=39.0

Q ss_pred             ceeEEeeCCCeEEEEEEEEEeeeCC------CCCCeEEEEEecCCCCCceeeecc
Q psy17215          2 HFCEGQSYGKKFELTYISLSFCPKS------IKPDSLAIYKSQDFGKSWQPLQFY   50 (174)
Q Consensus         2 ~v~ltldL~~~f~v~~v~l~f~~~s------prP~s~~iekS~d~G~~W~p~qyf   50 (174)
                      .-.|+|||++...|..+.+......      ..|..+-||-|.| |.+|+..--+
T Consensus        64 P~~itIDLg~~~~v~~~~~~~r~~~~~~~~~g~ik~~~I~~S~D-g~~W~~v~~~  117 (172)
T 3hnm_A           64 PYYFVFDMGKEYTLFRFGFANPVAPAAHVWAGTSKAGYVEASID-NENWVKLKDW  117 (172)
T ss_dssp             CEEEEEEEEEEEEEEEEEEECCCSSCTTSTTCCEEEEEEEEESS-SSCEEEEECC
T ss_pred             CEEEEEECCCceEEeEEEEEecCCCCcccCCCCeEEEEEEEEeC-CCCeEEeEEE
Confidence            3469999999999999988776332      4788999999999 7899987644

>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis}

Probab=91.97  E-value=0.12  Score=42.59  Aligned_cols=36  Identities=11%  Similarity=-0.020  Sum_probs=25.8

Q ss_pred             EEeeCCCeEEEEEEEEEeeeC----CCCCCeEEEEEecCC
Q psy17215          5 EGQSYGKKFELTYISLSFCPK----SIKPDSLAIYKSQDF   40 (174)
Q Consensus         5 ltldL~~~f~v~~v~l~f~~~----sprP~s~~iekS~d~   40 (174)
                      ++||||+.+.|..|+|.+...    ...+..+-|+-|.|.
T Consensus        53 ~~VDLg~~~~v~~V~i~~r~d~~~~~~~~~~i~v~~s~d~   92 (293)
T 3cqo_A           53 WRVDLLEPYIVTSITITNRGDCCPERLNGVEIHIGNSLQE   92 (293)
T ss_dssp             EEEEEEEEEEEEEEEEECCSSSCGGGGTTEEEEEESCCGG
T ss_pred             EEEECCCceEEEEEEEEeCCCCccccccCeEEEEecCCcc
Confidence            789999999999999996410    224455666667663

>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron}

Probab=91.93  E-value=0.098  Score=46.82  Aligned_cols=33  Identities=15%  Similarity=0.280  Sum_probs=25.0

Q ss_pred             CCCCccccccCCCCCceeecCCCCCCCCCCCCCCCeeEEEEeCCC
Q psy17215        130 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLEK  174 (174)
Q Consensus       130 ~Hp~~~ltD~~~~~~~TwWQS~~~~~~~~~~~~p~~VtltLdLgk  174 (174)
                      .+.+++++|.   +..|+|.++...         ..-.|+||||+
T Consensus       342 ~~~~~~a~Dg---d~~TyW~a~~~~---------~~~wl~vDLg~  374 (469)
T 3eyp_A          342 KYSPEKMLDN---EKNTYFAGKDGE---------VKADIIFTLPK  374 (469)
T ss_dssp             GGCGGGGGSC---CSSCCEECCTTC---------CCEEEEEEEEE
T ss_pred             CCChhhcccC---CCCceEeCCCCC---------CCcEEEEECCC
Confidence            3788999994   557999998653         34688898874

>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A

Probab=91.47  E-value=0.11  Score=38.67  Aligned_cols=22  Identities=32%  Similarity=0.572  Sum_probs=17.5

Q ss_pred             CCCCCccccccCCCCCceeecCCCC
Q psy17215        129 GRFPAEYLTDLNNPSNVTCWRSEAQ  153 (174)
Q Consensus       129 ~~Hp~~~ltD~~~~~~~TwWQS~~~  153 (174)
                      ..|++++|.|.   +..|||.|..+
T Consensus        25 ~~~~~~~~iDg---~~~T~W~s~g~   46 (139)
T 2yc2_A           25 ERFPPENMLDG---KDNTFWVTTGM   46 (139)
T ss_dssp             TTSCGGGGGSS---CTTCCEECCSS
T ss_pred             CCCChhheECC---CCCCEEeCCCC
Confidence            47999999994   46799999643

>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A

Probab=91.18  E-value=0.29  Score=36.33  Aligned_cols=41  Identities=10%  Similarity=-0.045  Sum_probs=35.8

Q ss_pred             eeEEeeCCCeEEEEEEEEEeeeCCCCCCeEEEEEecCC-CCCceee
Q psy17215          3 FCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDF-GKSWQPL   47 (174)
Q Consensus         3 v~ltldL~~~f~v~~v~l~f~~~sprP~s~~iekS~d~-G~~W~p~   47 (174)
                      -.|+|+|++...|.-|.|++.    ++....||.|.|. .+.|+.+
T Consensus        49 q~i~I~~~~~~~is~~~i~~~----~~k~~~ie~s~~~~p~~w~~i   90 (139)
T 2yc2_A           49 QEFVLRLESCIRVSKITTLSL----NVRKLAVEKCDQDKPDQFEKV   90 (139)
T ss_dssp             EEEEEEEEEEEEEEEEEEEEE----SEEEEEEEEECSSSCCCCEEE
T ss_pred             eEEEEECCCceEEEEEEEEec----CCcEEEEEEecCCCCCceEEE
Confidence            358999999999999999998    5999999999883 1789886

>3lei_A Platelet aggregation factor SM-HPAF; lectin domain of lectinolysin, fucose, blood clotting, nicke; HET: FUC; 1.90A {Streptococcus mitis} PDB: 3leg_A* 3le0_A* 3lek_A*

Probab=91.12  E-value=0.16  Score=38.03  Aligned_cols=55  Identities=18%  Similarity=0.073  Sum_probs=35.3

Q ss_pred             ccccCCCcccccccccceeeEeccccCCCCceeeeccCcccccCCCCCCCCCCCccccccCCCCCceeecCCCCCCCCCC
Q psy17215         80 HKKQGKGKMSRRRTNCQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSL  159 (174)
Q Consensus        80 ~s~la~g~~~~~~~~~~~v~assTCG~~~pe~~C~~~~~C~~Cd~~~p~~~Hp~~~ltD~~~~~~~TwWQS~~~~~~~~~  159 (174)
                      ..|||.|+         ++.+||+.+.                        +++++++|-   +..|.|.+..-.    .
T Consensus         9 ~~NlA~~k---------~ataSS~~~~------------------------~~a~~AvDG---~~~t~W~~~~ct----~   48 (153)
T 3lei_A            9 TENIARGK---------QASQSSTAYG------------------------GAATRAVDG---NVDSDYGHHSVT----H   48 (153)
T ss_dssp             SCCTTTTC---------EEEESCCCTT------------------------CCGGGGGSS---CCCCCGGGTCSC----C
T ss_pred             CcccCCCC---------CeeECCCcCC------------------------CCccccccC---CCCCccccCccc----c
Confidence            46999999         8999988751                        567788884   345788763211    0


Q ss_pred             CCCCCeeEEEEeCCC
Q psy17215        160 SASPDNVTLTLSLEK  174 (174)
Q Consensus       160 ~~~p~~VtltLdLgk  174 (174)
                      .....+--|+||||+
T Consensus        49 t~~~~~~W~~VDLg~   63 (153)
T 3lei_A           49 TNFEDNAWWQVDLGK   63 (153)
T ss_dssp             CCSBTTCEEEEEEEE
T ss_pred             CCCCCCCeEEEECCC
Confidence            001135668888874

>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A

Probab=91.00  E-value=0.36  Score=40.28  Aligned_cols=43  Identities=14%  Similarity=0.138  Sum_probs=35.7

Q ss_pred             EEeeCCCeEEEEEEEEEeeeC---CCCCCeEEEEEecCCCCCceeee
Q psy17215          5 EGQSYGKKFELTYISLSFCPK---SIKPDSLAIYKSQDFGKSWQPLQ   48 (174)
Q Consensus         5 ltldL~~~f~v~~v~l~f~~~---sprP~s~~iekS~d~G~~W~p~q   48 (174)
                      |+|||++...|+.|.++..+.   .....+..|+-|.| |.+|.+|.
T Consensus       217 LqVDLg~~~~Vt~V~tqg~~~~~~~~~v~~Y~l~~S~d-g~~W~~~~  262 (318)
T 2qqi_A          217 LQIDLGEEKIVRGIIIQGGKHRENKVFMRKFKIGYSNN-GSDWKMIM  262 (318)
T ss_dssp             EEEEEEEEEEEEEEEEEECCCTTCCCCCCCEEEEEESS-SSSCEECB
T ss_pred             EEEeCCCceEEEEEEEcCccCCCCCeEEEEEEEEEECC-CCCEEEEE
Confidence            899999999999999998732   13457888999988 89999865

>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A

Probab=90.79  E-value=0.15  Score=38.88  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=17.5

Q ss_pred             CCCCCccccccCCCCCceeecCCCC
Q psy17215        129 GRFPAEYLTDLNNPSNVTCWRSEAQ  153 (174)
Q Consensus       129 ~~Hp~~~ltD~~~~~~~TwWQS~~~  153 (174)
                      ..|++++|+|.   +..|+|.|..+
T Consensus        33 ~~~~~~~~iDg---n~~T~W~t~g~   54 (153)
T 1tvg_A           33 EKHPPENIIDG---NPETFWTTTGM   54 (153)
T ss_dssp             TTSCGGGGGSS---CTTCCEECCSC
T ss_pred             cccCHHHcCcC---CCCceEECCCC
Confidence            57999999994   55799999643

>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A

Probab=90.21  E-value=0.38  Score=36.66  Aligned_cols=40  Identities=13%  Similarity=0.066  Sum_probs=35.5

Q ss_pred             eeEEeeCCCeEEEEEEEEEeeeCCCCCCeEEEEEecCCCC--Cceee
Q psy17215          3 FCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGK--SWQPL   47 (174)
Q Consensus         3 v~ltldL~~~f~v~~v~l~f~~~sprP~s~~iekS~d~G~--~W~p~   47 (174)
                      -.|+|+|++...|.-|.|++.    ++....||.|.| |+  .|+..
T Consensus        57 q~i~Idf~k~~~is~~~i~~~----~vk~~~ie~s~d-~~p~~w~~i   98 (153)
T 1tvg_A           57 QEFIICFHKHVRIERLVIQSY----FVQTLKIEKSTS-KEPVDFEQW   98 (153)
T ss_dssp             EEEEEEEEEEEEEEEEEEEEE----SEEEEEEEEECS-SSSCCCEEE
T ss_pred             cEEEEECCCceEEEEEEEEec----CCEEEEEEEECC-CCCcceEEe
Confidence            358999999999999999999    589999999987 65  89886

>3hny_M Coagulation factor VIII; blood clotting, acute phase, blood coagulation, calcium, DIS mutation, disulfide bond, glycoprotein, hemophilia; 1.07A {Homo sapiens} SCOP: b.18.1.2 PDB: 3hnb_M 3hob_M 1d7p_M 1iqd_C 1cfg_A 1fac_A

Probab=87.91  E-value=0.39  Score=36.33  Aligned_cols=43  Identities=19%  Similarity=0.250  Sum_probs=32.3

Q ss_pred             EEeeCCCeEEEEEEEEEeeeCC---CCCCeEEEEEecCCCCCceeee
Q psy17215          5 EGQSYGKKFELTYISLSFCPKS---IKPDSLAIYKSQDFGKSWQPLQ   48 (174)
Q Consensus         5 ltldL~~~f~v~~v~l~f~~~s---prP~s~~iekS~d~G~~W~p~q   48 (174)
                      |+|||++...|+.|.++-....   .--.+..|+-|.| |.+|..|.
T Consensus        61 LqVDLg~~~~VtgV~tqG~~~~~~~~~v~~y~l~yS~D-g~~W~~~~  106 (159)
T 3hny_M           61 LQVDFQKTMKVTGVTTQGVKSLLTSMYVKEFLISSSQD-GHQWTLFF  106 (159)
T ss_dssp             EEEEEEEEEEEEEEEEECEEETTEEEEEEEEEEEEESS-SSSCEECE
T ss_pred             EEcccCCcEEEEEEEeecCCCCCccceEEEEEEEEEEC-CCcEEEEe
Confidence            8999999999999999865111   1124566888887 89999875

>4gwi_A Lectinolysin, platelet aggregation factor SM-HPAF; cholesterol-dependent cytolysins, lewis antigens, F-type LEC glycan binding; HET: BDZ; 1.60A {Streptococcus mitis} PDB: 4gwj_A* 3lei_A* 3leg_A* 3le0_A* 3lek_A*

Probab=87.78  E-value=0.41  Score=36.12  Aligned_cols=55  Identities=18%  Similarity=0.110  Sum_probs=34.6

Q ss_pred             ccccCCCcccccccccceeeEeccccCCCCceeeeccCcccccCCCCCCCCCCCccccccCCCCCceeecCCCCCCCCCC
Q psy17215         80 HKKQGKGKMSRRRTNCQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSL  159 (174)
Q Consensus        80 ~s~la~g~~~~~~~~~~~v~assTCG~~~pe~~C~~~~~C~~Cd~~~p~~~Hp~~~ltD~~~~~~~TwWQS~~~~~~~~~  159 (174)
                      ..|||.|+         ++.+||+.+                        .+++++++|.   +..|.|.+..-.    .
T Consensus         9 ~~NlA~~k---------~ataSS~~~------------------------~~~a~~AvDG---~~~t~w~~~sct----~   48 (153)
T 4gwi_A            9 TENIARGK---------QASQSSTAH------------------------GGAATRAVDG---NVDSDYGHHSVT----H   48 (153)
T ss_dssp             SCCTTTTC---------EEEESCCCT------------------------TCCGGGGGSS---CCCCCGGGTCCC----C
T ss_pred             ccccCCCC---------ceEEcCCCC------------------------CCCcceeEcC---CCCCcccccccc----c
Confidence            35999999         888888754                        2577788884   345788763210    0


Q ss_pred             CCCCCeeEEEEeCCC
Q psy17215        160 SASPDNVTLTLSLEK  174 (174)
Q Consensus       160 ~~~p~~VtltLdLgk  174 (174)
                      .....+.-|+||||+
T Consensus        49 t~~~~~~W~~VDLg~   63 (153)
T 4gwi_A           49 TNFEDNAWWQVDLGK   63 (153)
T ss_dssp             CCSBTTCEEEEEEEE
T ss_pred             CCCCCCCEEEEECCC
Confidence            001134568888874

>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A

Probab=87.31  E-value=0.53  Score=39.27  Aligned_cols=43  Identities=14%  Similarity=0.111  Sum_probs=34.0

Q ss_pred             EEeeCCCeEEEEEEEEEeeeCC-----CCCCeEEEEEecCCCCCceeee
Q psy17215          5 EGQSYGKKFELTYISLSFCPKS-----IKPDSLAIYKSQDFGKSWQPLQ   48 (174)
Q Consensus         5 ltldL~~~f~v~~v~l~f~~~s-----prP~s~~iekS~d~G~~W~p~q   48 (174)
                      |+|||++...|+.|.++.....     ..-.+..|+-|.| |.+|..|.
T Consensus        58 lqVDLg~~~~v~~v~tqg~~~~~~~~~~~v~~y~i~~S~D-g~~W~~~~  105 (318)
T 2qqi_A           58 IQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSN-GEDWITIK  105 (318)
T ss_dssp             EEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESS-SSSCEECE
T ss_pred             EEEccCCcEEEEeeeeeccccCCCCccEeEEEEEEEEecC-CCeEEEEe
Confidence            8999999999999999976222     1235577888988 89999874

>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens}

Probab=87.23  E-value=0.48  Score=39.57  Aligned_cols=43  Identities=16%  Similarity=0.058  Sum_probs=33.8

Q ss_pred             EEeeCCCeEEEEEEEEEeeeCC-----CCCCeEEEEEecCCCCCceeee
Q psy17215          5 EGQSYGKKFELTYISLSFCPKS-----IKPDSLAIYKSQDFGKSWQPLQ   48 (174)
Q Consensus         5 ltldL~~~f~v~~v~l~f~~~s-----prP~s~~iekS~d~G~~W~p~q   48 (174)
                      |+|||++...|+.|.++....+     ..-.+..|+-|.| |.+|..|.
T Consensus        59 lqvDLg~~~~vt~v~tqg~~~~~~~~~~~v~~y~l~~S~d-g~~W~~~~  106 (325)
T 2qqj_A           59 LQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTN-GEDWMVYR  106 (325)
T ss_dssp             EEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESS-SSSCEECE
T ss_pred             EEEeccceEEEEEEEeeCCcCCCCCcceeEEEEEEEEEcC-CcEeEEee
Confidence            8999999999999999986211     1224577888988 89999875

>2vm9_A Discoidin-2, discoidin II; DDR, lectin, aggregation, cell adhesion; 1.75A {Dictyostelium discoideum} PDB: 2vmc_A* 2vmd_A* 2vme_A*

Probab=86.88  E-value=0.74  Score=37.62  Aligned_cols=43  Identities=12%  Similarity=-0.033  Sum_probs=34.2

Q ss_pred             EEeeCCCeEEEEEEEEEeeeC-CCCCCeEEEEEecCCCCCceeee
Q psy17215          5 EGQSYGKKFELTYISLSFCPK-SIKPDSLAIYKSQDFGKSWQPLQ   48 (174)
Q Consensus         5 ltldL~~~f~v~~v~l~f~~~-sprP~s~~iekS~d~G~~W~p~q   48 (174)
                      |+|||++...|+.|.++..+. ..--.+..|+-|.| |.+|.+|.
T Consensus        63 LqVDLg~~~~Vt~V~tQG~~~~~~~vt~Y~l~yS~D-g~~W~~y~  106 (257)
T 2vm9_A           63 IVAGSDSVKHFVAISTQGRGDHDQWVTSYKLRYTLD-NVNWVEYN  106 (257)
T ss_dssp             EEEEEEEEEEEEEEEEECCSSSSCEEEEEEEEEESS-SSCEEEGG
T ss_pred             EeecCCCcEEEEEEEEeCCccCCceEEEEEEEEEcC-CCcEEEEc
Confidence            899999999999999998721 12235677888988 88999865

>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation factor domain, heparin binding domain, angiogene protein binding-cytokine complex; 2.65A {Homo sapiens} PDB: 1kmx_A 1vgh_A 2vgh_A

Probab=86.61  E-value=0.84  Score=36.65  Aligned_cols=43  Identities=14%  Similarity=0.113  Sum_probs=32.7

Q ss_pred             EEeeCCCeEEEEEEEEEeeeCCCC-----CCeEEEEEecCCCCCceeee
Q psy17215          5 EGQSYGKKFELTYISLSFCPKSIK-----PDSLAIYKSQDFGKSWQPLQ   48 (174)
Q Consensus         5 ltldL~~~f~v~~v~l~f~~~spr-----P~s~~iekS~d~G~~W~p~q   48 (174)
                      |+|||++...|+.|+++-...+..     -.+..|+-|.| |.+|..|.
T Consensus        57 LQVDLg~~~~VtgV~tQG~~~~~~~~~~~VtsY~l~yS~D-G~~W~~y~  104 (218)
T 4deq_A           57 IQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSN-GEDWITIK  104 (218)
T ss_dssp             EEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESS-SSSCEECE
T ss_pred             EEEeCCCcEEEEEEEEEeccCCCCCccceEEEEEEEEEeC-CCceEEee
Confidence            899999999999999987622211     13456788887 89999875

>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*

Probab=85.32  E-value=1.4  Score=39.26  Aligned_cols=45  Identities=16%  Similarity=0.335  Sum_probs=36.8

Q ss_pred             eeEEeeCCCeEEEEEEEEEeeeC--CCCCCeEEEEEecCCCCCce-eee
Q psy17215          3 FCEGQSYGKKFELTYISLSFCPK--SIKPDSLAIYKSQDFGKSWQ-PLQ   48 (174)
Q Consensus         3 v~ltldL~~~f~v~~v~l~f~~~--sprP~s~~iekS~d~G~~W~-p~q   48 (174)
                      ..|+|||++.+.|..|.+.....  ..++..+-||-|.| |.+|+ |+.
T Consensus       506 ~~i~vDLg~~~~i~~v~~~~r~~~~~~~~~~y~i~~S~D-g~~w~~~v~  553 (601)
T 1w8o_A          506 HRISLDLGGTHTISGLQYTRRQNSANEQVADYEIYTSLN-GTTWDGPVA  553 (601)
T ss_dssp             EEEEEEEEEEEEEEEEEEEECSSCSTTCBCEEEEEEESS-SSSCEEEEE
T ss_pred             eEEEEECCCcEEEeEEEEecCCCCCCCceEEEEEEEECC-CCccceeee
Confidence            46999999999999999976411  34889999999988 88999 454

>3lei_A Platelet aggregation factor SM-HPAF; lectin domain of lectinolysin, fucose, blood clotting, nicke; HET: FUC; 1.90A {Streptococcus mitis} PDB: 3leg_A* 3le0_A* 3lek_A*

Probab=85.21  E-value=1.5  Score=32.55  Aligned_cols=42  Identities=7%  Similarity=0.032  Sum_probs=31.7

Q ss_pred             eEEeeCCCeEEEEEEEEEeeeCC----CCCCeEEEEEecCCCCCcee
Q psy17215          4 CEGQSYGKKFELTYISLSFCPKS----IKPDSLAIYKSQDFGKSWQP   46 (174)
Q Consensus         4 ~ltldL~~~f~v~~v~l~f~~~s----prP~s~~iekS~d~G~~W~p   46 (174)
                      -|+||||+.+.|..|.| +.+..    .|-..+-|+-+.++|.+|..
T Consensus        56 W~~VDLg~~~~v~~V~i-~~~~d~~~~~r~~~~~I~vs~~dg~~w~~  101 (153)
T 3lei_A           56 WWQVDLGKTENVGKVKL-YNRGDGNVANRLSNFDVVLLNEAKQEVAR  101 (153)
T ss_dssp             EEEEEEEEEEEEEEEEE-EECCSTTCGGGSCSEEEEEECTTCCEEEE
T ss_pred             eEEEECCCceEEeEEEE-EeCCCCcccccceeEEEEEECCCCCcccc
Confidence            48999999999999999 65111    24456888888766888875

>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A*

Probab=84.77  E-value=0.55  Score=35.25  Aligned_cols=36  Identities=19%  Similarity=0.214  Sum_probs=25.3

Q ss_pred             CCCCccccccCCCCCceeecCCCCCCCCCCCCCCCeeEEEEeCCC
Q psy17215        130 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLEK  174 (174)
Q Consensus       130 ~Hp~~~ltD~~~~~~~TwWQS~~~~~~~~~~~~p~~VtltLdLgk  174 (174)
                      .+++++++|.   +..|+|.|....      .......|+||||+
T Consensus        44 ~~~~~~a~DG---~~~T~W~s~~~~------~~~~p~~i~iDLg~   79 (161)
T 4a41_A           44 EGLAKFAIDG---KENTIWHTKYNP------VEELPQSITLELGG   79 (161)
T ss_dssp             CCCGGGGGSS---CTTCCEECCTTT------TCCSCEEEEEEEEE
T ss_pred             CCcHHHcCcC---CCCCeEEeCCCC------CCCCCEEEEEEcCC
Confidence            4899999995   346899996431      11245789999875

>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens}

Probab=84.55  E-value=1.1  Score=37.47  Aligned_cols=45  Identities=13%  Similarity=0.088  Sum_probs=35.2

Q ss_pred             EEeeCCCeEEEEEEEEEeeeC---------CCCCCeEEEEEecCCCCCceeeecc
Q psy17215          5 EGQSYGKKFELTYISLSFCPK---------SIKPDSLAIYKSQDFGKSWQPLQFY   50 (174)
Q Consensus         5 ltldL~~~f~v~~v~l~f~~~---------sprP~s~~iekS~d~G~~W~p~qyf   50 (174)
                      |+|||++...|+.|+++..+.         ..--.+..|+-|.| |.+|..|.--
T Consensus       218 LqVDLg~~~~Vt~V~tqG~~~~~~~~~~~~~~~vt~Y~l~yS~d-g~~W~~~~~~  271 (325)
T 2qqj_A          218 LQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSLN-GKDWEYIQDP  271 (325)
T ss_dssp             EEEEEEEEEEEEEEEEECBCCC----CCCCCBCEEEEEEEEESS-SSSCEECEET
T ss_pred             eEeccCCceeEEEEEecCCCCCCCccccCcceeEEEEEEEEEeC-CCCeEEEecC
Confidence            899999999999999998721         12235678888888 8999987643

>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A

Probab=84.14  E-value=0.65  Score=44.90  Aligned_cols=50  Identities=18%  Similarity=0.155  Sum_probs=36.9

Q ss_pred             ccccccCCCcccccccccceeeEeccccCCCCceeeeccCcccccCCCCCCCCCCCccccccCCCCCceeecCCCCCCCC
Q psy17215         78 DRHKKQGKGKMSRRRTNCQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVN  157 (174)
Q Consensus        78 p~~s~la~g~~~~~~~~~~~v~assTCG~~~pe~~C~~~~~C~~Cd~~~p~~~Hp~~~ltD~~~~~~~TwWQS~~~~~~~  157 (174)
                      +.-.|||.|+         ++.|||+-+                        .|++++++|.   +..|+|.|. .    
T Consensus        22 ~~~~NLA~gk---------~vTASS~~~------------------------g~~p~nAvDG---n~~T~WsS~-~----   60 (914)
T 4a4a_A           22 ASGVEITEGV---------TVTAKGNTE------------------------GNTADLAIDG---DLSTYWESS-N----   60 (914)
T ss_dssp             --CCBCCSSC---------EEEESCCCT------------------------TCCGGGGSSS---CTTCCEECC-S----
T ss_pred             CccccccCCC---------ceEEeccCC------------------------CCcHHHeECC---CCCCeEecC-C----
Confidence            3456899999         999988753                        2888999984   456999997 2    


Q ss_pred             CCCCCCCeeEEEEeCCC
Q psy17215        158 SLSASPDNVTLTLSLEK  174 (174)
Q Consensus       158 ~~~~~p~~VtltLdLgk  174 (174)
                            ....||||||+
T Consensus        61 ------~~qWLqVDLG~   71 (914)
T 4a4a_A           61 ------DYKWIEVDLGG   71 (914)
T ss_dssp             ------SCCEEEEEEEE
T ss_pred             ------CCceEEEECCC
Confidence                  23579999974

>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A

Probab=84.02  E-value=1.1  Score=43.44  Aligned_cols=44  Identities=20%  Similarity=0.287  Sum_probs=37.3

Q ss_pred             eeEEeeCCCeEEEEEEEEEeeeCCCCCCeEEEEEecCCCCCceeeec
Q psy17215          3 FCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQF   49 (174)
Q Consensus         3 v~ltldL~~~f~v~~v~l~f~~~sprP~s~~iekS~d~G~~W~p~qy   49 (174)
                      .-|+||||+.+.|+.|.|+-.  ..+..+..|+-|.| |.+|+++.-
T Consensus        63 qWLqVDLG~~~~V~~V~l~~~--~~~v~~Y~Ie~S~D-G~~Wt~v~~  106 (914)
T 4a4a_A           63 KWIEVDLGGIYELSKIEIFNK--DEAVYKYNIYASED-GENFNKIAY  106 (914)
T ss_dssp             CEEEEEEEEEEEEEEEEEECS--SSSCEEEEEEEESS-SSCCEEEEE
T ss_pred             ceEEEECCCeEEEEEEEEEec--CCceEEEEEEEEcC-CCCeEEEEE
Confidence            358999999999999999754  56678899999998 999998753

>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1

Probab=83.43  E-value=1.2  Score=38.75  Aligned_cols=43  Identities=14%  Similarity=0.136  Sum_probs=34.3

Q ss_pred             EEeeCCCeEEEEEEEEEeeeCC---CCCCeEEEEEecCCCCCceeee
Q psy17215          5 EGQSYGKKFELTYISLSFCPKS---IKPDSLAIYKSQDFGKSWQPLQ   48 (174)
Q Consensus         5 ltldL~~~f~v~~v~l~f~~~s---prP~s~~iekS~d~G~~W~p~q   48 (174)
                      |+|||++...|+.|.++..+..   ..-.+..|+-|.| |.+|.+|.
T Consensus       349 LqVDLg~~~~vt~v~tqg~~~~~~~~~v~~Y~i~~S~d-g~~W~~~~  394 (450)
T 2qqm_A          349 LQIDLGEEKIVRGIIIQGGKHRENKVFMRKFKIGYSNN-GSDWKMIM  394 (450)
T ss_dssp             EEEEEEEEEEEEEEEEECCSCTTTCCCEEEEEEEEESS-SSSCEECB
T ss_pred             EEEeCCCcEEEEEEEecCccCCCCcEEEEEEEEEEECC-CCcEEEEE
Confidence            8999999999999999976221   2335678999988 89998865

>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}

Probab=81.77  E-value=1.5  Score=38.25  Aligned_cols=45  Identities=13%  Similarity=0.088  Sum_probs=34.8

Q ss_pred             EEeeCCCeEEEEEEEEEeeeC---------CCCCCeEEEEEecCCCCCceeeecc
Q psy17215          5 EGQSYGKKFELTYISLSFCPK---------SIKPDSLAIYKSQDFGKSWQPLQFY   50 (174)
Q Consensus         5 ltldL~~~f~v~~v~l~f~~~---------sprP~s~~iekS~d~G~~W~p~qyf   50 (174)
                      |+|||++...|+.|+++....         ..--.+..|+-|.| |.+|+.|.--
T Consensus       347 LqVDLg~~~~Vt~V~tqG~~~~~~~~~~~~~~~v~~Y~l~yS~d-g~~W~~~~~~  400 (460)
T 2qqo_A          347 LQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSLN-GKDWEYIQDP  400 (460)
T ss_dssp             EEEEEEEEEEEEEEEEECCCCC--CCCGGGCCCEEEEEEEEESS-SSSCEECEET
T ss_pred             EEEcCCCceEEEEEEecCCCCCCCccccccceeEEEEEEEEEeC-CCceEEEECC
Confidence            899999999999999997720         12234677888888 8999997643

>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A

Probab=81.54  E-value=1.2  Score=32.94  Aligned_cols=38  Identities=21%  Similarity=0.231  Sum_probs=25.6

Q ss_pred             CCCCCccccccCCCCCceeecCCCCCCCCCCCCCCCeeEEEEeCCC
Q psy17215        129 GRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLEK  174 (174)
Q Consensus       129 ~~Hp~~~ltD~~~~~~~TwWQS~~~~~~~~~~~~p~~VtltLdLgk  174 (174)
                      ..+++++|+|.   +..|+|.|....     ...+....|+||||+
T Consensus        26 ~~g~~~~a~DG---~~~T~W~s~~~~-----~~~~~p~~i~vDLg~   63 (159)
T 3f2z_A           26 NNGHAKHLIDG---NIETFWHSRWQG-----GSDPLPYEIIIDMNH   63 (159)
T ss_dssp             TSBSGGGGSSS---CTTCCEECCCTT-----CCCCSCEEEEEEEEE
T ss_pred             CCCcHHhcCCC---CCCCeEEcCCcC-----CCCCCCEEEEEECCC
Confidence            35789999995   345899986431     112245789999874

>3hnm_A Putative chitobiase; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, BTR319D.BT_411; 3.00A {Bacteroides thetaiotaomicron}

Probab=81.04  E-value=0.76  Score=35.47  Aligned_cols=37  Identities=19%  Similarity=0.146  Sum_probs=24.0

Q ss_pred             CCCCCccccccCCCCCceeecCCCCCCCCCCCCCCCeeEEEEeCCC
Q psy17215        129 GRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLEK  174 (174)
Q Consensus       129 ~~Hp~~~ltD~~~~~~~TwWQS~~~~~~~~~~~~p~~VtltLdLgk  174 (174)
                      ..|++++|+|.+   ..|+|.+....    +...  .-.|+|||||
T Consensus        37 ~G~~~~~liDgn---~~T~Wht~w~~----~~~~--P~~itIDLg~   73 (172)
T 3hnm_A           37 MGWGVESLIDNN---PGTQWLCRWDV----KEPL--PYYFVFDMGK   73 (172)
T ss_dssp             TSCSGGGGSSSC---TTSCEECCCSS----CCCS--CEEEEEEEEE
T ss_pred             cCccHHHcCCCC---CCCeEEecCCC----CCCC--CEEEEEECCC
Confidence            358999999953   35999984211    1122  3568888875

>1k12_A Lectin; beta barrel, protein carbohydrate complex, sugar binding protein; HET: FUC; 1.90A {Anguilla anguilla} SCOP: b.18.1.15

Probab=80.21  E-value=0.92  Score=34.04  Aligned_cols=59  Identities=12%  Similarity=-0.023  Sum_probs=35.0

Q ss_pred             ccccCCCcccccccccceeeEeccccCCCCceeeeccCcccccCCCCCCCC-CCCccccccCCCCCceeecCCCCCCCCC
Q psy17215         80 HKKQGKGKMSRRRTNCQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGR-FPAEYLTDLNNPSNVTCWRSEAQTSVNS  158 (174)
Q Consensus        80 ~s~la~g~~~~~~~~~~~v~assTCG~~~pe~~C~~~~~C~~Cd~~~p~~~-Hp~~~ltD~~~~~~~TwWQS~~~~~~~~  158 (174)
                      ..|||.|+         +..+||+.+...                    .. .++++.+|-   +..|.|.|..-.    
T Consensus         8 ~~NlA~gk---------~a~aSS~~~~~~--------------------~~~~~a~~AvDG---n~~t~w~s~sc~----   51 (158)
T 1k12_A            8 QENVAVRG---------KATQSAQLRGEH--------------------AANSEASNAIDG---NRDSNFYHGSCT----   51 (158)
T ss_dssp             EEEGGGGS---------EEEESCBCCSTT--------------------GGGCCGGGGGSS---CCCCCGGGSCSC----
T ss_pred             cccccCCC---------eeEECcccCCCC--------------------cccCCccccCcC---CCCCccccccEe----
Confidence            46999999         999999987310                    01 257778883   345678764211    


Q ss_pred             CCCCCCeeEEEEeCCC
Q psy17215        159 LSASPDNVTLTLSLEK  174 (174)
Q Consensus       159 ~~~~p~~VtltLdLgk  174 (174)
                      -.....+--|++|||+
T Consensus        52 ~T~~~~~~W~~VDLg~   67 (158)
T 1k12_A           52 HSSGQANPWWRVDLLQ   67 (158)
T ss_dssp             CBCSCSSCEEEEEEEE
T ss_pred             cCCCCCCCEEEEECCC
Confidence            0001134567777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d1w8oa2	142	Sialidase, C-terminal domain {Micromonospora virid	93.73
d1tvga_	136	Placental protein 25, pp25 {Human (Homo sapiens) [	92.59
d1jhja_	161	APC10/DOC1 subunit of the anaphase-promoting compl	91.58
d1jhja_	161	APC10/DOC1 subunit of the anaphase-promoting compl	91.47
d2qqia1	156	C2 domain of factor VIII {Human (Homo sapiens) [Ta	90.64
d1gqpa_	194	APC10/DOC1 subunit of the anaphase-promoting compl	89.9
d1k3ia2	162	Galactose oxidase, N-terminal domain {Fungi (Fusar	89.89
d1tvga_	136	Placental protein 25, pp25 {Human (Homo sapiens) [	89.38
d1sddb3	162	C2 domain of factor V {Cow (Bos taurus) [TaxId: 99	87.35
d1k3ia2	162	Galactose oxidase, N-terminal domain {Fungi (Fusar	86.43
d1w8oa2	142	Sialidase, C-terminal domain {Micromonospora virid	86.24
d1gqpa_	194	APC10/DOC1 subunit of the anaphase-promoting compl	85.39
d1k12a_	158	Fucose binding lectin {European eel (Anguilla angu	83.59
d2qqia2	155	B1 domain of neuropilin-1 {Human (Homo sapiens) [T	81.49

>d1w8oa2 b.18.1.1 (A:506-647) Sialidase, C-terminal domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Galactose-binding domain
domain: Sialidase, C-terminal domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=93.73  E-value=0.065  Score=36.85  Aligned_cols=45  Identities=13%  Similarity=0.227  Sum_probs=36.9

Q ss_pred             eeEEeeCCCeEEEEEEEEEeeeC--CCCCCeEEEEEecCCCCCceeee
Q psy17215          3 FCEGQSYGKKFELTYISLSFCPK--SIKPDSLAIYKSQDFGKSWQPLQ   48 (174)
Q Consensus         3 v~ltldL~~~f~v~~v~l~f~~~--sprP~s~~iekS~d~G~~W~p~q   48 (174)
                      .-|+|||++.+.|..|.|.+.-.  ..+|..+.||-|.| |..|....
T Consensus        47 ~wi~idl~~~~~v~~i~i~~~~~~~~~~~~~~~i~~S~d-g~~w~~~~   93 (142)
T d1w8oa2          47 HRISLDLGGTHTISGLQYTRRQNSANEQVADYEIYTSLN-GTTWDGPV   93 (142)
T ss_dssp             EEEEEEEEEEEEEEEEEEEECSSCSTTCBCEEEEEEESS-SSSCEEEE
T ss_pred             EEEEEECCCeEEeeEEEEECccccCcCCceeEEEEEecC-CCceEEEE
Confidence            35999999999999999987611  34789999999987 88897764

>d1tvga_ b.18.1.9 (A:) Placental protein 25, pp25 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: Placental protein 25, pp25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.044  Score=38.38  Aligned_cols=45  Identities=4%  Similarity=-0.060  Sum_probs=35.3

Q ss_pred             eeEEeeCCCeEEEEEEEEEeeeCCCCCCeEEEEEecCCCCCceeeecc
Q psy17215          3 FCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFY   50 (174)
Q Consensus         3 v~ltldL~~~f~v~~v~l~f~~~sprP~s~~iekS~d~G~~W~p~qyf   50 (174)
                      ..|+|||++.+.|..|.|...  ..++..+.|+=|.| |.+|.++-..
T Consensus        44 ~~i~idl~~~~~i~~i~i~~~--~~~~~~~~i~~s~D-g~~w~~v~~~   88 (136)
T d1tvga_          44 QEFIICFHKHVRIERLVIQSY--FVQTLKIEKSTSKE-PVDFEQWIEK   88 (136)
T ss_dssp             EEEEEEEEEEEEEEEEEEEEE--SEEEEEEEEECSSS-SCCCEEEEEE
T ss_pred             EEEEEECCCeEEEeeEEEEec--ccceeEEEEEEccC-CceeEEEEEe
Confidence            468999999999999999998  66665555555555 8899987654

>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: APC10/DOC1 subunit of the anaphase-promoting complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.58  E-value=0.077  Score=38.64  Aligned_cols=48  Identities=8%  Similarity=0.128  Sum_probs=39.9

Q ss_pred             eeEEeeCCCeEEEEEEEEEee-e--CCCCCCeEEEEEecCCCCCceeeecch
Q psy17215          3 FCEGQSYGKKFELTYISLSFC-P--KSIKPDSLAIYKSQDFGKSWQPLQFYS   51 (174)
Q Consensus         3 v~ltldL~~~f~v~~v~l~f~-~--~sprP~s~~iekS~d~G~~W~p~qyfa   51 (174)
                      -.|+|||++...|..|.|.+. .  .+-+|..+.||=|.| |.+|..+..+.
T Consensus        61 h~I~idl~~~~~i~~i~i~~~~~~d~s~~p~~~~i~~s~d-~~~w~~v~~~~  111 (161)
T d1jhja_          61 HLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNN-FHNLQEIRQLE  111 (161)
T ss_dssp             EEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEESS-TTSCEEEEEEE
T ss_pred             EEEEEEcCCCeEEEEEEEEecCCCCcCCCcEEEEEEEcCC-cCCceeEEEEE
Confidence            469999999999999999762 0  167999999999988 78899887654

>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: APC10/DOC1 subunit of the anaphase-promoting complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.47  E-value=0.027  Score=41.22  Aligned_cols=34  Identities=18%  Similarity=0.369  Sum_probs=24.6

Q ss_pred             CCCCCCccccccCCCCCceeecCCCCCCCCCCCCCCCeeEEEEeCCC
Q psy17215        128 RGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLEK  174 (174)
Q Consensus       128 ~~~Hp~~~ltD~~~~~~~TwWQS~~~~~~~~~~~~p~~VtltLdLgk  174 (174)
                      ..-|++++|+|.   +..|+|+|...          ..-.|+|||+|
T Consensus        36 ~~g~~~~~l~Dg---d~~T~W~S~~~----------~ph~I~idl~~   69 (161)
T d1jhja_          36 KPGFGVDQLRDD---NLETYWQSDGS----------QPHLVNIQFRR   69 (161)
T ss_dssp             BTTBSTHHHHSS---CTTCCEECCSS----------SSEEEEEEEEE
T ss_pred             CCCCCHHHccCC---CCCceeecCCC----------CCEEEEEEcCC
Confidence            346889999993   56799999632          23578888864

>d2qqia1 b.18.1.2 (A:431-586) C2 domain of factor VIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
domain: C2 domain of factor VIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.64  E-value=0.22  Score=35.47  Aligned_cols=44  Identities=14%  Similarity=0.099  Sum_probs=34.7

Q ss_pred             EEeeCCCeEEEEEEEEEeeeCC---CCCCeEEEEEecCCCCCceeeec
Q psy17215          5 EGQSYGKKFELTYISLSFCPKS---IKPDSLAIYKSQDFGKSWQPLQF   49 (174)
Q Consensus         5 ltldL~~~f~v~~v~l~f~~~s---prP~s~~iekS~d~G~~W~p~qy   49 (174)
                      |+|||++...|+.|.++.....   ....+..|+=|.| |.+|..+.-
T Consensus        55 lqvDlg~~~~I~gv~~qG~~~~~~~~~v~~y~l~yS~d-g~~W~~~~~  101 (156)
T d2qqia1          55 LQIDLGEEKIVRGIIIQGGKHRENKVFMRKFKIGYSNN-GSDWKMIMD  101 (156)
T ss_dssp             EEEEEEEEEEEEEEEEEECCCTTCCCCCCCEEEEEESS-SSSCEECBC
T ss_pred             EEecCCcEEEEEEEEEEecCCCCCceEEEEEEEEEeeC-CCeeEEEEE
Confidence            8999999999999999976211   1356789999987 889977653

>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: APC10/DOC1 subunit of the anaphase-promoting complex
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.90  E-value=0.071  Score=40.41  Aligned_cols=33  Identities=21%  Similarity=0.329  Sum_probs=23.1

Q ss_pred             CCCCCccccccCCCCCceeecCCCCCCCCCCCCCCCeeEEEEeCCC
Q psy17215        129 GRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLEK  174 (174)
Q Consensus       129 ~~Hp~~~ltD~~~~~~~TwWQS~~~~~~~~~~~~p~~VtltLdLgk  174 (174)
                      ..+++++++|.   +..|+|||...          ..-.|||+|+|
T Consensus        68 ~g~~~~~~~Dg---n~~T~W~S~~~----------~ph~i~idl~~  100 (194)
T d1gqpa_          68 LGNPVDFALDD---NYDTFWQSDGG----------QPHQLDIMFSK  100 (194)
T ss_dssp             TTCCGGGGSSS---CTTCCEECCSS----------SSEEEEEEEEE
T ss_pred             CCCCHHHhcCC---CCcceeccCCC----------CCEEEEEECCC
Confidence            35889999993   45799999632          23467777764

>d1tvga_ b.18.1.9 (A:) Placental protein 25, pp25 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: Placental protein 25, pp25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.38  E-value=0.11  Score=36.09  Aligned_cols=34  Identities=18%  Similarity=0.312  Sum_probs=24.0

Q ss_pred             CCCCCCccccccCCCCCceeecCCCCCCCCCCCCCCCeeEEEEeCCC
Q psy17215        128 RGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLEK  174 (174)
Q Consensus       128 ~~~Hp~~~ltD~~~~~~~TwWQS~~~~~~~~~~~~p~~VtltLdLgk  174 (174)
                      ...|++++++|.   +..|+|.+...          ..-.|+|||++
T Consensus        19 ~~~~~~~~~iDg---d~~T~W~s~~~----------~p~~i~idl~~   52 (136)
T d1tvga_          19 DEKHPPENIIDG---NPETFWTTTGM----------FPQEFIICFHK   52 (136)
T ss_dssp             CTTSCGGGGGSS---CTTCCEECCSC----------SSEEEEEEEEE
T ss_pred             CCCCCHHheEcC---CCCceeecCCC----------CcEEEEEECCC
Confidence            457999999994   45689988643          22467788763

>d1sddb3 b.18.1.2 (B:1863-2024) C2 domain of factor V {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
domain: C2 domain of factor V
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.35  E-value=0.39  Score=34.31  Aligned_cols=53  Identities=21%  Similarity=0.214  Sum_probs=38.4

Q ss_pred             EEeeCCCeEEEEEEEEEeeeCCCCC---CeEEEEEecCCCCCceeeecchhhhhhhc
Q psy17215          5 EGQSYGKKFELTYISLSFCPKSIKP---DSLAIYKSQDFGKSWQPLQFYSSQCKKLY   58 (174)
Q Consensus         5 ltldL~~~f~v~~v~l~f~~~sprP---~s~~iekS~d~G~~W~p~qyfa~~C~~~F   58 (174)
                      |+|||++...|+.|.++-..+...+   .+..|+=|.| |.+|..|.--...-...|
T Consensus        60 lqVDlg~~~~Vtgv~tqG~~~~~~~~~vt~y~l~yS~d-g~~w~~~~~~~~~~~~vF  115 (162)
T d1sddb3          60 IQVDMQKEVLLTGIQTQGAKHYLKPYYTTEFCVAYSLD-RKNWRIFKGNSTRNVMYF  115 (162)
T ss_dssp             EEEEEEEEEEEEEEEEECEESSSSEEEEEEEEEEEESS-SSSCEECCSSCSSSSCCE
T ss_pred             EEecCCcEEEEEEEEeECccCCCCceeEEEEEEEEeeC-CCeeEEeccCcccceeec
Confidence            8999999999999999865333332   4667888887 889988775444433445

>d1w8oa2 b.18.1.1 (A:506-647) Sialidase, C-terminal domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Galactose-binding domain
domain: Sialidase, C-terminal domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=86.24  E-value=0.35  Score=32.80  Aligned_cols=40  Identities=23%  Similarity=0.191  Sum_probs=26.0

Q ss_pred             CCCCCCccccccCCCCCceeecCCCCCCCCCCCCCCCeeEEEEeCCC
Q psy17215        128 RGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLEK  174 (174)
Q Consensus       128 ~~~Hp~~~ltD~~~~~~~TwWQS~~~~~~~~~~~~p~~VtltLdLgk  174 (174)
                      ...+++++++|.   +..|+|+|....    .........|+|||++
T Consensus        16 ~~~g~a~~~~Dg---~~~T~W~s~~~~----~~~~~~~~wi~idl~~   55 (142)
T d1w8oa2          16 REDGRASNVIDG---NPSTFWHTEWSR----ADAPGYPHRISLDLGG   55 (142)
T ss_dssp             SSCCCGGGGGSS---CTTCCEECCCSS----TTCCCSCEEEEEEEEE
T ss_pred             CCCCCHHheEcC---CCCCcccccCcC----CCCCCccEEEEEECCC
Confidence            357899999994   456899987432    1112245678888863

>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: APC10/DOC1 subunit of the anaphase-promoting complex
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.39  E-value=0.35  Score=36.35  Aligned_cols=46  Identities=11%  Similarity=0.257  Sum_probs=37.9

Q ss_pred             eeEEeeCCCeEEEEEEEEEeee---CCCCCCeEEEEEecCCCCCceeeec
Q psy17215          3 FCEGQSYGKKFELTYISLSFCP---KSIKPDSLAIYKSQDFGKSWQPLQF   49 (174)
Q Consensus         3 v~ltldL~~~f~v~~v~l~f~~---~sprP~s~~iekS~d~G~~W~p~qy   49 (174)
                      -.|+|||++...|..|.|.|..   .+-+|..+.|+-|.| |.+|..+..
T Consensus        92 h~i~idl~~~~~i~~i~i~~~~~~d~sy~p~~~~i~~s~d-~~~w~~v~t  140 (194)
T d1gqpa_          92 HQLDIMFSKRMDICVMAIFFSMIADESYAPSLVKVYAGHS-PSDARFYKM  140 (194)
T ss_dssp             EEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEESS-TTTCEEEEE
T ss_pred             EEEEEECCCCcEEEEEEEEecccccccCCceEEEEEEeCC-cCCceEEEE
Confidence            3699999999999999997731   167899999999998 778987654

>d1k12a_ b.18.1.15 (A:) Fucose binding lectin {European eel (Anguilla anguilla) [TaxId: 7936]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Fucose binding lectin
domain: Fucose binding lectin
species: European eel (Anguilla anguilla) [TaxId: 7936]

Probab=83.59  E-value=0.68  Score=32.20  Aligned_cols=41  Identities=10%  Similarity=-0.078  Sum_probs=32.3

Q ss_pred             eEEeeCCCeEEEEEEEEEeee--CCCCCCeEEEEEecCCCCCce
Q psy17215          4 CEGQSYGKKFELTYISLSFCP--KSIKPDSLAIYKSQDFGKSWQ   45 (174)
Q Consensus         4 ~ltldL~~~f~v~~v~l~f~~--~sprP~s~~iekS~d~G~~W~   45 (174)
                      -++||||+.|.|..|.|.+..  ...|+..+.|+-|.| +.+|.
T Consensus        60 W~~VDLg~~~~i~~v~i~~r~d~~~~~~~~~~i~vs~d-~~~~~  102 (158)
T d1k12a_          60 WWRVDLLQVYTITSVTITNRGDCCGERISGAEINIGQH-LASNG  102 (158)
T ss_dssp             EEEEEEEEEEEEEEEEEEECSSSCTTTTTTCEEEEESS-CTTTT
T ss_pred             EEEEEcCCceEeeEEEEEcccccccccccceeEEeccC-ccccc
Confidence            389999999999999998751  146778889998877 56664

>d2qqia2 b.18.1.2 (A:273-427) B1 domain of neuropilin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
domain: B1 domain of neuropilin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.49  E-value=0.82  Score=32.15  Aligned_cols=51  Identities=16%  Similarity=0.131  Sum_probs=33.8

Q ss_pred             EEeeCCCeEEEEEEEEEeeeCCC-CCC----eEEEEEecCCCCCceeeecchhhhhhhc
Q psy17215          5 EGQSYGKKFELTYISLSFCPKSI-KPD----SLAIYKSQDFGKSWQPLQFYSSQCKKLY   58 (174)
Q Consensus         5 ltldL~~~f~v~~v~l~f~~~sp-rP~----s~~iekS~d~G~~W~p~qyfa~~C~~~F   58 (174)
                      |+|||++...|+.|.++-.+... .-.    +..|+=|.| |..|.++.-  .+....|
T Consensus        54 lqvDlg~~~~itgi~~qg~~~~~~~~~~~v~~y~~~ys~d-g~~w~~~~~--~~~~~vF  109 (155)
T d2qqia2          54 IQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSN-GEDWITIKE--GNKPVLF  109 (155)
T ss_dssp             EEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESS-SSSCEECEE--TTEECCE
T ss_pred             EEecCCceeEeeeeeeccccCCcCCceeeeEEEEEEeccC-CCceEEEee--cccccee
Confidence            89999999999999998763322 112    334556666 788988652  2334445