Psyllid ID: psy17279

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MAGIESVLFWLPGERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK
Secondary Structure (PSIPRED)
cccccHHcccccccccccccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccEEEccccccccccccHHEHEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAGIESVLfwlpgerldhYATEAVESLvywrdpkisgavFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKtneghpfkeyleldislpadKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTlpkvyennkaTIDANLEVVQGKIAEITSK
Flexible Loop (DISEMBL)
MAGIESVLFWLPGERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGkiaeitsk
Low Complexity Region (SEG)
MAGIESVLFWLPGERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISvvanlallvlvGAIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK
Disordered region (IsUnstruct)
****ESVLFWLPGERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKI******
Disordered Region (DISOPRED)
*********************EAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITS*
Disordered Region (DISEMBL)
MAGIESVLFWLPGERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK
Disordered Region (DISPRO)
****ESVLFWLPGERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAGIESVLFWLPGERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q99P72	1162	Reticulon-4 OS=Mus muscul	no	N/A	0.868	0.148	0.471	3e-44
Q9NQC3	1192	Reticulon-4 OS=Homo sapie	no	N/A	0.787	0.130	0.5	4e-44
Q5J6M8	214	Reticulon-3-A OS=Xenopus	N/A	N/A	0.888	0.822	0.488	5e-44
A7MC64	764	Reticulon-1 OS=Xenopus tr	yes	N/A	0.949	0.246	0.473	5e-44
Q68EW1	214	Reticulon-3-B OS=Xenopus	N/A	N/A	0.919	0.850	0.472	7e-44
Q9JK11	1163	Reticulon-4 OS=Rattus nor	yes	N/A	0.787	0.134	0.493	1e-43
Q28D16	213	Reticulon-3 OS=Xenopus tr	no	N/A	0.888	0.826	0.488	1e-43
Q6IFY7	207	Reticulon-1-A OS=Xenopus	N/A	N/A	0.909	0.869	0.480	9e-43
Q5MY90	752	Reticulon-1-B OS=Xenopus	N/A	N/A	0.969	0.255	0.469	3e-42
Q5IS59	776	Reticulon-1 OS=Pan troglo	no	N/A	0.868	0.221	0.523	4e-42

>sp|Q99P72|RTN4_MOUSE Reticulon-4 OS=Mus musculus GN=Rtn4 PE=1 SV=2

 Score =  178 bits (451), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 83/176 (47%), Positives = 131/176 (74%), Gaps = 4/176 (2%)

Query: 27   LVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKT 86
            L+YWRD K +G VFG SL +L+SL  +S++SV A +AL +L   I FRIYK ++QA+QK+
Sbjct: 978  LLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQKS 1037

Query: 87   NEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWT 146
            +EGHPF+ YLE ++++  + V+  + +A+ H ++T+ ELRR+FLV+D VDS+KF +++W 
Sbjct: 1038 DEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVLMWV 1097

Query: 147  FTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANL----EVVQGKIAEITSK 198
            FTYVG+ FNGLTL+I+  ++LF++P +YE ++A ID  L    + V+  +A+I +K
Sbjct: 1098 FTYVGALFNGLTLLILALISLFSIPVIYERHQAQIDHYLGLANKSVKDAMAKIQAK 1153

Developmental neurite growth regulatory factor with a role as a negative regulator of axon-axon adhesion and growth, and as a facilitator of neurite branching. Regulates neurite fasciculation, branching and extension in the developing nervous system. Involved in down-regulation of growth, stabilization of wiring and restriction of plasticity in the adult CNS. Regulates the radial migration of cortical neurons via an RTN4R-LINGO1 containing receptor complex. May inhibit BACE1 activity and amyloid precursor protein processing.
Mus musculus (taxid: 10090)

>sp|Q9NQC3|RTN4_HUMAN Reticulon-4 OS=Homo sapiens GN=RTN4 PE=1 SV=2

 Score =  177 bits (449), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 120/156 (76%)

Query: 27   LVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKT 86
            L+YWRD K +G VFG SL +L+SL  +S++SV A +AL +L   I FRIYK ++QA+QK+
Sbjct: 1008 LLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQKS 1067

Query: 87   NEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWT 146
            +EGHPF+ YLE ++++  + V+  + +A+ H + T+ ELRR+FLV+D VDS+KF +++W 
Sbjct: 1068 DEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVLMWV 1127

Query: 147  FTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATID 182
            FTYVG+ FNGLTL+I+  ++LF++P +YE ++A ID
Sbjct: 1128 FTYVGALFNGLTLLILALISLFSVPVIYERHQAQID 1163

Developmental neurite growth regulatory factor with a role as a negative regulator of axon-axon adhesion and growth, and as a facilitator of neurite branching. Regulates neurite fasciculation, branching and extension in the developing nervous system. Involved in down-regulation of growth, stabilization of wiring and restriction of plasticity in the adult CNS. Regulates the radial migration of cortical neurons via an RTN4R-LINGO1 containing receptor complex (By similarity). Isoform 2 reduces the anti-apoptotic activity of Bcl-xl and Bcl-2. This is likely consecutive to their change in subcellular location, from the mitochondria to the endoplasmic reticulum, after binding and sequestration. Isoform 2 and isoform 3 inhibit BACE1 activity and amyloid precursor protein processing.

Homo sapiens (taxid: 9606)

>sp|Q5J6M8|RTN3A_XENLA Reticulon-3-A OS=Xenopus laevis GN=rtn3-a PE=2 SV=2

 Score =  177 bits (448), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 86/176 (48%), Positives = 123/176 (69%)

Query: 23  AVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQA 82
           AV  L+YWRD K SG VFG ++ +L+SLA +S+ISV++ L L +L   I +R+YKS+LQA
Sbjct: 25  AVRDLLYWRDVKQSGMVFGGTMVLLLSLAAFSIISVISYLVLSLLTVTISYRVYKSVLQA 84

Query: 83  VQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVI 142
           VQKT+EGHPFK  LE DI+L +D  + A  A+++H +  L  + R+FLV+D VDS+K  +
Sbjct: 85  VQKTDEGHPFKPLLEKDITLSSDSFQKALTASLAHVNHALKYIVRLFLVDDLVDSLKLAL 144

Query: 143 ILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
           ++W  TYVG+ FNG+TL+I+G +  FT P VYE  K  ID  + +V  ++  IT K
Sbjct: 145 LMWLMTYVGAVFNGITLLILGVLLTFTAPIVYEKYKVQIDHYVSLVHSQVKSITEK 200

May be involved in membrane trafficking in the early secretory pathway.

Xenopus laevis (taxid: 8355)

>sp|A7MC64|RTN1_XENTR Reticulon-1 OS=Xenopus tropicalis GN=rtn1 PE=2 SV=2

 Score =  177 bits (448), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 89/188 (47%), Positives = 131/188 (69%)

Query: 11  LPGERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGA 70
           LP + L   +      L+YWRD K +G VFG  L +L SL  +S++SV+A LAL  L   
Sbjct: 565 LPLKPLPFLSKRKAIELLYWRDIKQTGIVFGSVLLMLFSLTQFSVVSVIAYLALAALSAT 624

Query: 71  IGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFL 130
           I FRIYKS+LQAVQKT+EGHPFK YL+++ISL  ++++  T+   ++ ++ + ELRR+FL
Sbjct: 625 ISFRIYKSVLQAVQKTDEGHPFKSYLDMEISLSQEQIQKYTDCLQAYTNSIVKELRRLFL 684

Query: 131 VEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQG 190
           V+D VDS+KF +++W  TYVG+ FNGLTL+I+  V++F+LP VY+  +A ID  L +V+ 
Sbjct: 685 VQDLVDSLKFAVLMWLLTYVGALFNGLTLLIMAVVSMFSLPVVYDKYQAQIDQYLGLVRT 744

Query: 191 KIAEITSK 198
            +  I +K
Sbjct: 745 NMNTIVTK 752

May be involved in neuroendocrine secretion or in membrane trafficking in neuroendocrine cells.

Xenopus tropicalis (taxid: 8364)

>sp|Q68EW1|RTN3B_XENLA Reticulon-3-B OS=Xenopus laevis GN=rtn3-b PE=2 SV=1

 Score =  176 bits (447), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 123/182 (67%)

Query: 17  DHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIY 76
           D  +  AV  L+YWRD K SG VFG ++ +L+SLA +S+ISV++ L L +L   I FR+Y
Sbjct: 19  DKGSGCAVRDLLYWRDVKQSGMVFGGTMVLLLSLAAFSIISVISYLVLSLLSVTISFRVY 78

Query: 77  KSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVD 136
           KS+LQAVQKT EGHPFK  LE DI+L +D  +    ++++H +  L  + R+FLVED VD
Sbjct: 79  KSVLQAVQKTEEGHPFKPLLEKDIALSSDSFQKGLSSSLAHVNHALKSIVRLFLVEDLVD 138

Query: 137 SIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEIT 196
           S+K  +++W  TY+G+ FNG+TL+I+G +  FT P VYE  K  ID  + +V  ++  IT
Sbjct: 139 SLKLALLMWLMTYIGAVFNGITLLILGVLLAFTTPLVYEKYKVQIDHYVSLVHSQVKSIT 198

Query: 197 SK 198
            K
Sbjct: 199 EK 200

May be involved in membrane trafficking in the early secretory pathway.

Xenopus laevis (taxid: 8355)

>sp|Q9JK11|RTN4_RAT Reticulon-4 OS=Rattus norvegicus GN=Rtn4 PE=1 SV=1

 Score =  176 bits (446), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 120/156 (76%)

Query: 27   LVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKT 86
            L+YWRD K +G VFG SL +L+SL  +S++SV A +AL +L   I FRIYK ++QA+QK+
Sbjct: 979  LLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQKS 1038

Query: 87   NEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWT 146
            +EGHPF+ YLE ++++  + V+  + +A+ H ++T+ ELRR+FLV+D VDS+KF +++W 
Sbjct: 1039 DEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVLMWV 1098

Query: 147  FTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATID 182
            FTYVG+ FNGLTL+I+  ++LF++P +YE ++  ID
Sbjct: 1099 FTYVGALFNGLTLLILALISLFSIPVIYERHQVQID 1134

Developmental neurite growth regulatory factor with a role as a negative regulator of axon-axon adhesion and growth, and as a facilitator of neurite branching. Regulates neurite fasciculation, branching and extension in the developing nervous system. Involved in down-regulation of growth, stabilization of wiring and restriction of plasticity in the adult CNS. Regulates the radial migration of cortical neurons via an RTN4R-LINGO1 containing receptor complex. Isoform 2 and isoform 3 inhibit BACE1 activity and amyloid precursor protein processing.

Rattus norvegicus (taxid: 10116)

>sp|Q28D16|RTN3_XENTR Reticulon-3 OS=Xenopus tropicalis GN=rtn3 PE=2 SV=1

 Score =  176 bits (446), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/176 (48%), Positives = 122/176 (69%)

Query: 23  AVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQA 82
           AV+ L+YWRD K SG VFG ++ +L+SLA +S+ISV++ L L +L   I +R+YKS+LQA
Sbjct: 24  AVQDLLYWRDVKQSGMVFGGTMVLLLSLAAFSIISVISYLVLSLLAVTISYRVYKSVLQA 83

Query: 83  VQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVI 142
           VQKT+EGHPFK  LE DI+L +D  + A   +++H +  L  + R+FLVED VDS+K  +
Sbjct: 84  VQKTDEGHPFKPLLEKDIALSSDAFQKALSTSLAHVNHALKYIVRLFLVEDLVDSLKLAL 143

Query: 143 ILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
           ++W  TYVG+ FNG+TL+I+G +  FT P VYE  K  ID  + +V   +  IT K
Sbjct: 144 LMWLMTYVGAVFNGITLLILGVLLAFTAPIVYEKYKVQIDHYVSLVHSHVKSITEK 199

May be involved in membrane trafficking in the early secretory pathway.

Xenopus tropicalis (taxid: 8364)

>sp|Q6IFY7|RTN1A_XENLA Reticulon-1-A OS=Xenopus laevis GN=rtn1-a PE=2 SV=1

 Score =  172 bits (437), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 87/181 (48%), Positives = 130/181 (71%), Gaps = 1/181 (0%)

Query: 18  HYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYK 77
           ++  +A++ L+YWRD K +G VFG  L +L SL  +S++SV+A LAL  L   I FRIYK
Sbjct: 16  NWKCQAID-LLYWRDIKQTGIVFGSVLLMLFSLIQFSVVSVMAYLALAALSATISFRIYK 74

Query: 78  SILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDS 137
           S+LQAVQKT+EGHPFK YL+++ISL  ++++  T+    + ++   ELRR+FLV+D VDS
Sbjct: 75  SVLQAVQKTDEGHPFKSYLDMEISLSQEQIQKYTDCLQVYTNSIAKELRRLFLVQDLVDS 134

Query: 138 IKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITS 197
           +KF +++W  TYVG+ FNGLTL+I+  V++F+LP VY+  +A ID  L +V+  +  I +
Sbjct: 135 LKFAVLMWLLTYVGALFNGLTLLIMAVVSMFSLPVVYDKYQAQIDQYLGLVRTNMNTIMT 194

Query: 198 K 198
           K
Sbjct: 195 K 195

May be involved in neuroendocrine secretion or in membrane trafficking in neuroendocrine cells.

Xenopus laevis (taxid: 8355)

>sp|Q5MY90|RTN1B_XENLA Reticulon-1-B OS=Xenopus laevis GN=rtn1-b PE=2 SV=1

 Score =  171 bits (433), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 92/196 (46%), Positives = 135/196 (68%), Gaps = 4/196 (2%)

Query: 3   GIESVLFWLPGERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANL 62
           G+ S+L   P   L  +  +A++ L+YWRD K +G VFG  L +L SL  +S++SV+A L
Sbjct: 549 GMTSILGPKP---LTFFKKKAID-LLYWRDVKQTGIVFGSILLMLFSLTLFSVVSVIAYL 604

Query: 63  ALLVLVGAIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATL 122
           AL  L   I FRIYKS+LQAVQKT+EGHPFK YL+++ISL  ++++  T     + ++  
Sbjct: 605 ALAALSATISFRIYKSVLQAVQKTDEGHPFKSYLDIEISLSQEQIQKYTGCFQLYTNSIA 664

Query: 123 LELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATID 182
            ELRR+FLV+D VDS+KF +++W  TYVG+ FNGLTL+I+  V++F+LP VY+  +A ID
Sbjct: 665 KELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLTLLIMAVVSMFSLPVVYDKYQAQID 724

Query: 183 ANLEVVQGKIAEITSK 198
             L +V+  +  I +K
Sbjct: 725 QYLGLVRTNMNIIVTK 740

May be involved in neuroendocrine secretion or in membrane trafficking in neuroendocrine cells.

Xenopus laevis (taxid: 8355)

>sp|Q5IS59|RTN1_PANTR Reticulon-1 OS=Pan troglodytes GN=RTN1 PE=2 SV=1

 Score =  171 bits (432), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 90/172 (52%), Positives = 126/172 (73%)

Query: 27  LVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKT 86
           L+YWRD K +G VFG  L +L SL  +S++SVVA LAL  L   I FRIYKS+LQAVQKT
Sbjct: 592 LLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQKT 651

Query: 87  NEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWT 146
           +EGHPFK YLEL+I+L  ++++  T+    + ++TL ELRR+FLV+D VDS+KF +++W 
Sbjct: 652 DEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWL 711

Query: 147 FTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
            TYVG+ FNGLTL+++  V++FTLP VY  ++A ID  L +V+  I  + +K
Sbjct: 712 LTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVAK 763

May be involved in neuroendocrine secretion or in membrane trafficking in neuroendocrine cells.

Pan troglodytes (taxid: 9598)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
307188898	192	Reticulon-1 [Camponotus floridanus]	0.883	0.911	0.668	3e-63
189236779	491	PREDICTED: similar to reticulon/nogo [Tr	0.934	0.376	0.645	2e-62
270006218	211	hypothetical protein TcasGA2_TC008387 [T	0.883	0.829	0.674	5e-61
195114630	234	GI14630 [Drosophila mojavensis] gi|19391	0.934	0.790	0.592	3e-59
195386096	236	GJ17140 [Drosophila virilis] gi|19414819	0.934	0.783	0.587	4e-59
195437430	587	GK24458 [Drosophila willistoni] gi|19416	0.934	0.315	0.587	6e-59
281364426	607	Rtnl1, isoform H [Drosophila melanogaste	0.934	0.304	0.592	8e-59
195342616	234	GM18049 [Drosophila sechellia] gi|195576	0.934	0.790	0.592	8e-59
28574662	234	Rtnl1, isoform B [Drosophila melanogaste	0.934	0.790	0.592	8e-59
40215775	458	LD43688p [Drosophila melanogaster]	0.934	0.403	0.592	9e-59

>gi|307188898|gb|EFN73447.1| Reticulon-1 [Camponotus floridanus]

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 117/175 (66%), Positives = 145/175 (82%)

Query: 24  VESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAV 83
           V +L+YWRDPK SG VFG  L VL+SLAY+SLISV+A L+LLVL G I FRIYK++LQAV
Sbjct: 1   VAALIYWRDPKKSGIVFGTILGVLLSLAYFSLISVLAYLSLLVLTGTILFRIYKTVLQAV 60

Query: 84  QKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVII 143
           QKT++GHPFK+ L+LD++LPA+KV    + A++HA+A   ELRR+FLVEDFVDS+KF ++
Sbjct: 61  QKTSDGHPFKDILDLDLTLPAEKVHEVADVAVAHANAAFSELRRLFLVEDFVDSLKFGVL 120

Query: 144 LWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
           LW  TYVGSWFNG+TL+IIG VALFTLPKVYE N+  ID NL +VQ KI EIT+K
Sbjct: 121 LWCLTYVGSWFNGMTLIIIGVVALFTLPKVYETNQEQIDQNLALVQAKINEITAK 175

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236779|ref|XP_967166.2| PREDICTED: similar to reticulon/nogo [Tribolium castaneum]

 Score =  243 bits (621), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 122/189 (64%), Positives = 151/189 (79%), Gaps = 4/189 (2%)

Query: 10  WLPGERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVG 69
           W   ERL       VESL+YWRDPK SG VFG  L VL++L Y+SLISVVA L+LL L G
Sbjct: 290 WFNPERL----NPKVESLIYWRDPKKSGPVFGGVLLVLLALTYFSLISVVAYLSLLGLTG 345

Query: 70  AIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIF 129
            I FRIYK+I+QAVQKT +GHPFK+ LE D+SLP +KVK  +E A++H +A ++ELRR+F
Sbjct: 346 TISFRIYKNIVQAVQKTGDGHPFKDLLEFDVSLPQEKVKEVSEVAVAHINAAVVELRRLF 405

Query: 130 LVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQ 189
           LVED VDSIKF ++LWT TY+G+WFNG+TL+II +VALF+LPKVYE NK  IDANLE+V+
Sbjct: 406 LVEDLVDSIKFGVLLWTLTYLGAWFNGMTLIIIAWVALFSLPKVYETNKTQIDANLEIVR 465

Query: 190 GKIAEITSK 198
            K+AEITSK
Sbjct: 466 TKLAEITSK 474

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006218|gb|EFA02666.1| hypothetical protein TcasGA2_TC008387 [Tribolium castaneum]

 Score =  239 bits (609), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 118/175 (67%), Positives = 147/175 (84%)

Query: 24  VESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAV 83
           VESL+YWRDPK SG VFG  L VL++L Y+SLISVVA L+LL L G I FRIYK+I+QAV
Sbjct: 20  VESLIYWRDPKKSGPVFGGVLLVLLALTYFSLISVVAYLSLLGLTGTISFRIYKNIVQAV 79

Query: 84  QKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVII 143
           QKT +GHPFK+ LE D+SLP +KVK  +E A++H +A ++ELRR+FLVED VDSIKF ++
Sbjct: 80  QKTGDGHPFKDLLEFDVSLPQEKVKEVSEVAVAHINAAVVELRRLFLVEDLVDSIKFGVL 139

Query: 144 LWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
           LWT TY+G+WFNG+TL+II +VALF+LPKVYE NK  IDANLE+V+ K+AEITSK
Sbjct: 140 LWTLTYLGAWFNGMTLIIIAWVALFSLPKVYETNKTQIDANLEIVRTKLAEITSK 194

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195114630|ref|XP_002001870.1| GI14630 [Drosophila mojavensis] gi|193912445|gb|EDW11312.1| GI14630 [Drosophila mojavensis]

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/189 (59%), Positives = 143/189 (75%), Gaps = 4/189 (2%)

Query: 10  WLPGERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVG 69
           W   ERL       VESL+YWRD K SG VFG  L  L++++ +S+ISV A L+LL L+G
Sbjct: 28  WFKPERLH----PLVESLIYWRDVKKSGIVFGAGLITLVAISCFSVISVFAYLSLLTLIG 83

Query: 70  AIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIF 129
            + FRIYKS+ QAVQKTN+GHPFKEYLELD++L  +KV+     A++H +    ELRR+F
Sbjct: 84  TVAFRIYKSVTQAVQKTNDGHPFKEYLELDLTLSQEKVQHIAGVAVAHINGFTAELRRLF 143

Query: 130 LVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQ 189
           LVED VDSIKF +ILW FTY+G+WFNG+TLVI+ FV+LFTLPKVYENNK +ID  L++V+
Sbjct: 144 LVEDIVDSIKFGVILWVFTYIGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTYLDLVR 203

Query: 190 GKIAEITSK 198
            K+ EIT K
Sbjct: 204 NKLTEITDK 212

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195386096|ref|XP_002051740.1| GJ17140 [Drosophila virilis] gi|194148197|gb|EDW63895.1| GJ17140 [Drosophila virilis]

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 111/189 (58%), Positives = 144/189 (76%), Gaps = 4/189 (2%)

Query: 10  WLPGERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVG 69
           W   ERL       VESL+YWRD K SG VFG  L  L++++ +S+ISV A L+LL LVG
Sbjct: 28  WFKPERLH----PQVESLIYWRDVKKSGIVFGAGLITLVAISSFSVISVFAYLSLLALVG 83

Query: 70  AIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIF 129
            + FR+YKS+ QAVQKTN+GHPFKEYLELD++L  +KV+     A++H +  + ELRR+F
Sbjct: 84  TVAFRVYKSVTQAVQKTNDGHPFKEYLELDLTLSQEKVQHFAGVAVAHINGFVAELRRLF 143

Query: 130 LVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQ 189
           LVED +DSIKF +ILW FTY+G+WFNG+TLVI+ FV+LFTLPKVYENNK +ID  L++V+
Sbjct: 144 LVEDIIDSIKFGVILWVFTYIGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTYLDLVR 203

Query: 190 GKIAEITSK 198
            K+ EIT K
Sbjct: 204 NKLTEITDK 212

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195437430|ref|XP_002066643.1| GK24458 [Drosophila willistoni] gi|194162728|gb|EDW77629.1| GK24458 [Drosophila willistoni]

 Score =  232 bits (591), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 111/189 (58%), Positives = 143/189 (75%), Gaps = 4/189 (2%)

Query: 10  WLPGERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVG 69
           W   ERL       VESL+YWRD K SG VFG  L  L++++++S+ISV A L+LL L G
Sbjct: 379 WFKPERL----HPQVESLIYWRDVKKSGIVFGAGLITLVAISWFSVISVFAYLSLLALFG 434

Query: 70  AIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIF 129
            + FRIYKS+ QAVQKTN+GHPFKEYLELD++L  +KV+     A++H +    ELRR+F
Sbjct: 435 TVAFRIYKSVTQAVQKTNDGHPFKEYLELDLTLSQEKVQNIAGVAVAHLNGFTAELRRLF 494

Query: 130 LVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQ 189
           LVED +DSIKF +ILW FTY+G+WFNG+TLVI+ FV+LFTLPKVYENNK +ID  L++V+
Sbjct: 495 LVEDLIDSIKFGVILWVFTYIGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTYLDLVR 554

Query: 190 GKIAEITSK 198
            K+ EIT K
Sbjct: 555 SKLTEITDK 563

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281364426|ref|NP_001162875.1| Rtnl1, isoform H [Drosophila melanogaster] gi|272406895|gb|ACZ94166.1| Rtnl1, isoform H [Drosophila melanogaster]

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 112/189 (59%), Positives = 143/189 (75%), Gaps = 4/189 (2%)

Query: 10  WLPGERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVG 69
           W   ERL       VESL+YWRD K SG VFG  L  L +++ +S+ISV A L+LL L G
Sbjct: 401 WFKPERL----HPQVESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLFG 456

Query: 70  AIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIF 129
            + FRIYKS+ QAVQKTNEGHPFK+YLELD++L  +KV+     A++H +  + ELRR+F
Sbjct: 457 TVAFRIYKSVTQAVQKTNEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFISELRRLF 516

Query: 130 LVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQ 189
           LVED +DSIKF +ILW FTYVG+WFNG+TLVI+ FV+LFTLPKVYENNK +ID +L++V+
Sbjct: 517 LVEDIIDSIKFGVILWVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLDLVR 576

Query: 190 GKIAEITSK 198
            K+ EIT K
Sbjct: 577 SKLTEITDK 585

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195342616|ref|XP_002037896.1| GM18049 [Drosophila sechellia] gi|195576668|ref|XP_002078197.1| GD22669 [Drosophila simulans] gi|194132746|gb|EDW54314.1| GM18049 [Drosophila sechellia] gi|194190206|gb|EDX03782.1| GD22669 [Drosophila simulans]

 Score =  231 bits (590), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 112/189 (59%), Positives = 143/189 (75%), Gaps = 4/189 (2%)

Query: 10  WLPGERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVG 69
           W   ERL       VESL+YWRD K SG VFG  L  L +++ +S+ISV A L+LL L G
Sbjct: 28  WFKPERLH----PQVESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLFG 83

Query: 70  AIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIF 129
            + FRIYKS+ QAVQKTNEGHPFK+YLELD++L  +KV+     A++H +  + ELRR+F
Sbjct: 84  TVAFRIYKSVTQAVQKTNEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFISELRRLF 143

Query: 130 LVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQ 189
           LVED +DSIKF +ILW FTYVG+WFNG+TLVI+ FV+LFTLPKVYENNK +ID +L++V+
Sbjct: 144 LVEDIIDSIKFGVILWVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLDLVR 203

Query: 190 GKIAEITSK 198
            K+ EIT K
Sbjct: 204 SKLTEITDK 212

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28574662|ref|NP_787984.1| Rtnl1, isoform B [Drosophila melanogaster] gi|28574664|ref|NP_787985.1| Rtnl1, isoform E [Drosophila melanogaster] gi|281364428|ref|NP_001162876.1| Rtnl1, isoform I [Drosophila melanogaster] gi|281364430|ref|NP_001162877.1| Rtnl1, isoform J [Drosophila melanogaster] gi|7296921|gb|AAF52194.1| Rtnl1, isoform E [Drosophila melanogaster] gi|17862200|gb|AAL39577.1| LD14068p [Drosophila melanogaster] gi|22945622|gb|AAF52197.2| Rtnl1, isoform B [Drosophila melanogaster] gi|220942982|gb|ACL84034.1| Rtnl1-PB [synthetic construct] gi|220953138|gb|ACL89112.1| Rtnl1-PB [synthetic construct] gi|272406896|gb|ACZ94167.1| Rtnl1, isoform I [Drosophila melanogaster] gi|272406897|gb|ACZ94168.1| Rtnl1, isoform J [Drosophila melanogaster]

 Score =  231 bits (590), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 112/189 (59%), Positives = 143/189 (75%), Gaps = 4/189 (2%)

Query: 10  WLPGERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVG 69
           W   ERL       VESL+YWRD K SG VFG  L  L +++ +S+ISV A L+LL L G
Sbjct: 28  WFKPERLH----PQVESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLFG 83

Query: 70  AIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIF 129
            + FRIYKS+ QAVQKTNEGHPFK+YLELD++L  +KV+     A++H +  + ELRR+F
Sbjct: 84  TVAFRIYKSVTQAVQKTNEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFISELRRLF 143

Query: 130 LVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQ 189
           LVED +DSIKF +ILW FTYVG+WFNG+TLVI+ FV+LFTLPKVYENNK +ID +L++V+
Sbjct: 144 LVEDIIDSIKFGVILWVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLDLVR 203

Query: 190 GKIAEITSK 198
            K+ EIT K
Sbjct: 204 SKLTEITDK 212

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|40215775|gb|AAR82778.1| LD43688p [Drosophila melanogaster]

 Score =  231 bits (590), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 112/189 (59%), Positives = 143/189 (75%), Gaps = 4/189 (2%)

Query: 10  WLPGERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVG 69
           W   ERL       VESL+YWRD K SG VFG  L  L +++ +S+ISV A L+LL L G
Sbjct: 252 WFKPERL----HPQVESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLFG 307

Query: 70  AIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIF 129
            + FRIYKS+ QAVQKTNEGHPFK+YLELD++L  +KV+     A++H +  + ELRR+F
Sbjct: 308 TVAFRIYKSVTQAVQKTNEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFISELRRLF 367

Query: 130 LVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQ 189
           LVED +DSIKF +ILW FTYVG+WFNG+TLVI+ FV+LFTLPKVYENNK +ID +L++V+
Sbjct: 368 LVEDIIDSIKFGVILWVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLDLVR 427

Query: 190 GKIAEITSK 198
            K+ EIT K
Sbjct: 428 SKLTEITDK 436

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
FB|FBgn0053113	607	Rtnl1 "Reticulon-like1" [Droso	0.934	0.304	0.566	5.5e-54
UNIPROTKB|E1BUW7	347	Gga.4205 "Uncharacterized prot	0.979	0.559	0.418	5.2e-42
UNIPROTKB|F1P5B2	344	Gga.4205 "Uncharacterized prot	0.969	0.558	0.428	5.2e-42
UNIPROTKB|I3LBH0	208	RTN1 "Uncharacterized protein"	0.909	0.865	0.464	3.6e-41
UNIPROTKB|F1P5B1	326	Gga.4205 "Uncharacterized prot	0.888	0.539	0.437	7.5e-41
UNIPROTKB|Q1LZ76	208	RTN1 "Uncharacterized protein"	0.909	0.865	0.464	7.5e-41
UNIPROTKB|F1PNX5	208	RTN1 "Uncharacterized protein"	0.909	0.865	0.464	7.5e-41
UNIPROTKB|Q7YRW9	199	RTN4 "Uncharacterized protein"	0.893	0.889	0.429	1.2e-40
UNIPROTKB|A8MT72	193	RTN1 "Reticulon-1" [Homo sapie	0.868	0.891	0.482	1.2e-40
UNIPROTKB|Q6IM70	199	RTN4 "RTN4-C" [Sus scrofa (tax	0.893	0.889	0.429	1.2e-40

FB|FBgn0053113 Rtnl1 "Reticulon-like1" [Drosophila melanogaster (taxid:7227)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 107/189 (56%), Positives = 137/189 (72%)

Query:    10 WLPGERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISXXXXXXXXXXXG 69
             W   ERL H     VESL+YWRD K SG VFG  L  L +++ +S+IS           G
Sbjct:   401 WFKPERL-H---PQVESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLFG 456

Query:    70 AIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIF 129
              + FRIYKS+ QAVQKTNEGHPFK+YLELD++L  +KV+     A++H +  + ELRR+F
Sbjct:   457 TVAFRIYKSVTQAVQKTNEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFISELRRLF 516

Query:   130 LVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQ 189
             LVED +DSIKF +ILW FTYVG+WFNG+TLVI+ FV+LFTLPKVYENNK +ID +L++V+
Sbjct:   517 LVEDIIDSIKFGVILWVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLDLVR 576

Query:   190 GKIAEITSK 198
              K+ EIT K
Sbjct:   577 SKLTEITDK 585

GO:0042048 "olfactory behavior" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0044432 "endoplasmic reticulum part" evidence=IDA

GO:0005790 "smooth endoplasmic reticulum" evidence=IDA

GO:0045169 "fusome" evidence=IDA

GO:0002121 "inter-male aggressive behavior" evidence=IMP

UNIPROTKB|E1BUW7 Gga.4205 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 82/196 (41%), Positives = 128/196 (65%)

Query:     5 ESVLFWLPG--ERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISXXXXX 62
             +  LF LP   E L H +   +  L+YWRD K +G VFG SL +L+SL  +S++S     
Sbjct:   139 DETLFALPATSEPLMHSSAGNIVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYI 198

Query:    63 XXXXXXGAIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATL 122
                     I FRIYK ++QA+QK++EGHPF+ YLE D+++  + ++  +   + H + T+
Sbjct:   199 ALALLSVTISFRIYKGVIQAIQKSDEGHPFRAYLESDVAVSEELIQKYSSVVLGHINGTV 258

Query:   123 LELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATID 182
              ELRR+FLV+D VDS+KF +++W FTYVG+ FNGLTL+I+  ++LF++P +YE ++A ID
Sbjct:   259 KELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQID 318

Query:   183 ANLEVVQGKIAEITSK 198
               L +V   + +  +K
Sbjct:   319 HYLGLVNKNVKDAMAK 334

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|F1P5B2 Gga.4205 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 84/196 (42%), Positives = 129/196 (65%)

Query:     5 ESVLFWLPG--ERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISXXXXX 62
             +  LF LP   E L H  + AV  L+YWRD K +G VFG SL +L+SL  +S++S     
Sbjct:   138 DETLFALPATSEPLMH--SSAVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYI 195

Query:    63 XXXXXXGAIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATL 122
                     I FRIYK ++QA+QK++EGHPF+ YLE D+++  + ++  +   + H + T+
Sbjct:   196 ALALLSVTISFRIYKGVIQAIQKSDEGHPFRAYLESDVAVSEELIQKYSSVVLGHINGTV 255

Query:   123 LELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATID 182
              ELRR+FLV+D VDS+KF +++W FTYVG+ FNGLTL+I+  ++LF++P +YE ++A ID
Sbjct:   256 KELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQID 315

Query:   183 ANLEVVQGKIAEITSK 198
               L +V   + +  +K
Sbjct:   316 HYLGLVNKNVKDAMAK 331

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|I3LBH0 RTN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 84/181 (46%), Positives = 126/181 (69%)

Query:    18 HYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISXXXXXXXXXXXGAIGFRIYK 77
             ++ ++A++ L+YWRD K +G VFG  L +L SL  +S++S             I FRIYK
Sbjct:    16 NWKSQAID-LLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYK 74

Query:    78 SILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDS 137
             S+LQAVQKT+EGHPFK YLEL+I+L  ++++  T+    + ++TL ELRR+FLV+D VDS
Sbjct:    75 SVLQAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDS 134

Query:   138 IKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITS 197
             +KF +++W  TYVG+ FNGLTL+++  V++FTLP VY  ++A ID  L +V+  I  + +
Sbjct:   135 LKFAVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVA 194

Query:   198 K 198
             K
Sbjct:   195 K 195

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|F1P5B1 Gga.4205 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 77/176 (43%), Positives = 120/176 (68%)

Query:    23 AVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISXXXXXXXXXXXGAIGFRIYKSILQA 82
             AV  L+YWRD K +G VFG SL +L+SL  +S++S             I FRIYK ++QA
Sbjct:   138 AVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQA 197

Query:    83 VQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVI 142
             +QK++EGHPF+ YLE D+++  + ++  +   + H + T+ ELRR+FLV+D VDS+KF +
Sbjct:   198 IQKSDEGHPFRAYLESDVAVSEELIQKYSSVVLGHINGTVKELRRLFLVDDLVDSLKFAV 257

Query:   143 ILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
             ++W FTYVG+ FNGLTL+I+  ++LF++P +YE ++A ID  L +V   + +  +K
Sbjct:   258 LMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLVNKNVKDAMAK 313

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|Q1LZ76 RTN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 84/181 (46%), Positives = 125/181 (69%)

Query:    18 HYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISXXXXXXXXXXXGAIGFRIYK 77
             ++ ++A++ L+YWRD K +G VFG  L +L SL  +S++S             I FRIYK
Sbjct:    16 NWKSQAID-LLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYK 74

Query:    78 SILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDS 137
             S+LQAVQKT+EGHPFK YLEL+I+L  ++++  T+    + + TL ELRR+FLV+D VDS
Sbjct:    75 SVLQAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNNTLKELRRLFLVQDLVDS 134

Query:   138 IKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITS 197
             +KF +++W  TYVG+ FNGLTL+++  V++FTLP VY  ++A ID  L +V+  I  + +
Sbjct:   135 LKFAVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVA 194

Query:   198 K 198
             K
Sbjct:   195 K 195

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|F1PNX5 RTN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 84/181 (46%), Positives = 125/181 (69%)

Query:    18 HYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISXXXXXXXXXXXGAIGFRIYK 77
             ++ ++A++ L+YWRD K +G VFG  L +L SL  +S++S             I FRIYK
Sbjct:    16 NWKSQAID-LLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYK 74

Query:    78 SILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDS 137
             S+LQAVQKT+EGHPFK YLEL+I+L  ++++  T+    + + TL ELRR+FLV+D VDS
Sbjct:    75 SVLQAVQKTDEGHPFKTYLELEITLSQEQIQKYTDCLQFYVNNTLKELRRLFLVQDLVDS 134

Query:   138 IKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITS 197
             +KF +++W  TYVG+ FNGLTL+++  V++FTLP VY  ++A ID  L +V+  I  + +
Sbjct:   135 LKFAVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINTVVA 194

Query:   198 K 198
             K
Sbjct:   195 K 195

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|Q7YRW9 RTN4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 76/177 (42%), Positives = 121/177 (68%)

Query:    22 EAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISXXXXXXXXXXXGAIGFRIYKSILQ 81
             + V  L+YWRD K +G VFG SL +L+SL  +S++S             I FRIYK ++Q
Sbjct:    10 DKVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQ 69

Query:    82 AVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFV 141
             A+QK++EGHPF+ YLE ++++  + V+  + +A+ H + T+ ELRR+FLV+D VDS+KF 
Sbjct:    70 AIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFA 129

Query:   142 IILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
             +++W FTYVG+ FNGLTL+I+  ++LF++P +YE ++A ID  L +    + +  +K
Sbjct:   130 VLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAK 186

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|A8MT72 RTN1 "Reticulon-1" [Homo sapiens (taxid:9606)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 83/172 (48%), Positives = 119/172 (69%)

Query:    27 LVYWRDPKISGAVFGVSLAVLISLAYYSLISXXXXXXXXXXXGAIGFRIYKSILQAVQKT 86
             L+YWRD K +G VFG  L +L SL  +S++S             I FRIYKS+LQAVQKT
Sbjct:     9 LLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQKT 68

Query:    87 NEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWT 146
             +EGHPFK YLEL+I+L  ++++  T+    + ++TL ELRR+FLV+D VDS+KF +++W 
Sbjct:    69 DEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWL 128

Query:   147 FTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
              TYVG+ FNGLTL+++  V++FTLP VY  ++A ID  L +V+  I  + +K
Sbjct:   129 LTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVAK 180

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|Q6IM70 RTN4 "RTN4-C" [Sus scrofa (taxid:9823)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 76/177 (42%), Positives = 121/177 (68%)

Query:    22 EAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISXXXXXXXXXXXGAIGFRIYKSILQ 81
             + V  L+YWRD K +G VFG SL +L+SL  +S++S             I FRIYK ++Q
Sbjct:    10 DKVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQ 69

Query:    82 AVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFV 141
             A+QK++EGHPF+ YLE ++++  + V+  + +A+ H + T+ ELRR+FLV+D VDS+KF 
Sbjct:    70 AIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFA 129

Query:   142 IILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
             +++W FTYVG+ FNGLTL+I+  ++LF++P +YE ++A ID  L +    + +  +K
Sbjct:   130 VLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAK 186

GO:0005783 "endoplasmic reticulum" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	198
pfam02453	164	pfam02453, Reticulon, Reticulon	2e-47

>gnl|CDD|217046 pfam02453, Reticulon, Reticulon

 Score =  152 bits (386), Expect = 2e-47
 Identities = 70/173 (40%), Positives = 103/173 (59%), Gaps = 11/173 (6%)

Query: 24  VESLVYWRDPKISGAVFGVSLA--VLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQ 81
           V  L+ WRDPK SG VFG  L   +L SL+ YSL+SV++ L LL+L     +R+ K +L 
Sbjct: 1   VADLLLWRDPKKSGVVFGSLLVIWLLFSLSGYSLLSVLSYLLLLLLAVTFLWRLAKKLLN 60

Query: 82  AVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFV 141
           AV          E L+ D++L  + V+   ++     +  L ELRR+FL ED VDS+K  
Sbjct: 61  AVP---------EPLDPDVTLSEETVEEIADSLRVLINKALKELRRLFLGEDLVDSLKAA 111

Query: 142 IILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAE 194
           + LW  +Y+GS F+GLTL+ IG +  FT+P +YE  +  IDA +E  + K+ +
Sbjct: 112 VGLWLLSYLGSLFSGLTLLYIGVILAFTVPLLYEKYQDEIDAYVEKAKAKVKK 164

Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologues. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
KOG1792|consensus	230		100.0
PF02453	169	Reticulon: Reticulon; InterPro: IPR003388 Eukaryot	100.0
PF04842	683	DUF639: Plant protein of unknown function (DUF639)	97.58
KOG1792|consensus	230		94.55
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	93.75
PF06398	359	Pex24p: Integral peroxisomal membrane peroxin; Int	93.18
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	88.56

>KOG1792|consensus

Probab=100.00  E-value=5.6e-39  Score=266.19  Aligned_cols=174  Identities=34%  Similarity=0.567  Sum_probs=156.3

Q ss_pred             CCCCcchhhhccccCCcchhHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCccc
Q psy17279         18 HYATEAVESLVYWRDPKISGAVFGVSL--AVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQK-TNEGHPFKE   94 (198)
Q Consensus        18 ~~g~~~v~dlllWrd~~~S~~vf~~~~--~~L~~~~~~slis~~~~~~l~~l~~~~~~~i~~~~~~~~~~-~~~~~P~~~   94 (198)
                      .+|||+++|+++|||+|.||.++++.+  |++++..+|+.+++.|++++..+.  +.| .|++...+.+| +++.    .
T Consensus        37 ~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~--i~F-~w~~~~~~~~k~~~~~----~  109 (230)
T KOG1792|consen   37 VLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALA--ILF-LWSKAVTFLNKKSEPG----A  109 (230)
T ss_pred             cCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHH-HHHHHHHHHhcCCCcc----c
Confidence            488999999999999999999999987  688888999999999998877776  556 44554454554 5442    4


Q ss_pred             ccccccccCHHHHHHHHHHHHHHHHHHHHHHhhHHcccCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHH
Q psy17279         95 YLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVY  174 (198)
Q Consensus        95 yl~~~~~lse~~v~~~~~~v~~~in~~l~~lr~l~~~~d~~~slk~~~~L~ils~lg~~~s~~tLl~i~~~~~FtvP~~Y  174 (198)
                      |++.++++|||.+++.+++++.++|+.+.++|++++++|+++++|+++.+|+++++|+|||+.|++++|++++||+|.+|
T Consensus       110 ~lp~~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~~TvP~~Y  189 (230)
T KOG1792|consen  110 YLPVEITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFNFLTLLYIGLVLLFTVPVLY  189 (230)
T ss_pred             cCCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchh
Confidence            55579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcHHHHHHHHHHHHHHHHhHhcC
Q psy17279        175 ENNKATIDANLEVVQGKIAEITSK  198 (198)
Q Consensus       175 ~~~q~~ID~~v~~~~~~i~~~~~~  198 (198)
                      |+|||+||++++++.++++++++|
T Consensus       190 Eky~d~ID~~~~~~~~~~k~~~~~  213 (230)
T KOG1792|consen  190 EKYEDQIDPYLGKVMEELKKHYRK  213 (230)
T ss_pred             HHhHHHHhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999874

>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER)

Probab=100.00  E-value=4.6e-38  Score=248.80  Aligned_cols=167  Identities=36%  Similarity=0.669  Sum_probs=49.7

Q ss_pred             hhhhccccCCcchhHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccccccc
Q psy17279         24 VESLVYWRDPKISGAVFGVSLA--VLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKTNEGHPFKEYLELDIS  101 (198)
Q Consensus        24 v~dlllWrd~~~S~~vf~~~~~--~L~~~~~~slis~~~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~P~~~yl~~~~~  101 (198)
                      |+|+++||||++||++|++++.  +++...++|++|++|+++++.+++++.++..+++   +++.+.+ |++++.+++.+
T Consensus         1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~   76 (169)
T PF02453_consen    1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKV---LSRSPKG-PFKEPLDYDLE   76 (169)
T ss_dssp             ----------------------------------------------------THCCCT---CCHHHHC-TTHHHHCHHHH
T ss_pred             CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---hccCCCC-CccCCcccccc
Confidence            6899999999999999999986  8999999999999999999999877765444443   3332212 78888888899


Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHhhHHcccCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHhhcHHHH
Q psy17279        102 LPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATI  181 (198)
Q Consensus       102 lse~~v~~~~~~v~~~in~~l~~lr~l~~~~d~~~slk~~~~L~ils~lg~~~s~~tLl~i~~~~~FtvP~~Y~~~q~~I  181 (198)
                      ++||++++.++.+.+.+|..++.+|+++.++|+..|+++++++|+++++|+++|++||++++++++||+|++||+||++|
T Consensus        77 ~~~~~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~I  156 (169)
T PF02453_consen   77 ISEERVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEI  156 (169)
T ss_dssp             HCCHHHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-------------------------------------------
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy17279        182 DANLEVVQGKIAE  194 (198)
Q Consensus       182 D~~v~~~~~~i~~  194 (198)
                      |++++++++|+||
T Consensus       157 d~~~~~~~~~~~k  169 (169)
T PF02453_consen  157 DQYVAKVKEKVKK  169 (169)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999885

Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.

>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function

Probab=97.58  E-value=0.0024  Score=60.53  Aligned_cols=141  Identities=16%  Similarity=0.194  Sum_probs=90.5

Q ss_pred             cchhhhccccCCcchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CCCCccccc
Q psy17279         22 EAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKTN-----EGHPFKEYL   96 (198)
Q Consensus        22 ~~v~dlllWrd~~~S~~vf~~~~~~L~~~~~~slis~~~~~~l~~l~~~~~~~i~~~~~~~~~~~~-----~~~P~~~yl   96 (198)
                      ..+.++..|+||.+|...++.....++-       -++.|++-..+...+.+-++.+.-...++..     ...|.++- 
T Consensus       504 ~~~~~l~~We~P~kt~~Fl~~~~~iI~r-------~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nT-  575 (683)
T PF04842_consen  504 KWLQKLASWEEPLKTLVFLALFLYIIYR-------GWLGYIFPAFLLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNT-  575 (683)
T ss_pred             HHHHHHhhccCcchhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhccCCccceEEecCCCCccH-
Confidence            6778999999999999888765543331       2333333333333333334422211111110     11121111 


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHHhhHHcccCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhH
Q psy17279         97 ELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLP  171 (198)
Q Consensus        97 ~~~~~lse~~v~~~~~~v~~~in~~l~~lr~l~~~~d~~~slk~~~~L~ils~lg~~~s~~tLl~i~~~~~FtvP  171 (198)
                       .+-.+.-...-.-++......|-++-++|.|++...+..+-++++.+..++.+-.++.+.-++...++-.||-.
T Consensus       576 -vEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre  649 (683)
T PF04842_consen  576 -VEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRE  649 (683)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             11112222233345666778899999999999999999999999999999999999999999999999999864

>KOG1792|consensus

Probab=94.55  E-value=0.083  Score=44.31  Aligned_cols=73  Identities=11%  Similarity=0.102  Sum_probs=61.2

Q ss_pred             HHhhHHcccCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHhhc-----------------------HHH
Q psy17279        124 ELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENN-----------------------KAT  180 (198)
Q Consensus       124 ~lr~l~~~~d~~~slk~~~~L~ils~lg~~~s~~tLl~i~~~~~FtvP~~Y~~~-----------------------q~~  180 (198)
                      +..|+++++|.+.++.+.++..++..+-..++..++..++.+.+++++..+.++                       |++
T Consensus        42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~  121 (230)
T KOG1792|consen   42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEF  121 (230)
T ss_pred             chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHH
Confidence            578999999999999999999999999999999999999999888888777665                       456


Q ss_pred             HHHHHHHHHHHHHhHh
Q psy17279        181 IDANLEVVQGKIAEIT  196 (198)
Q Consensus       181 ID~~v~~~~~~i~~~~  196 (198)
                      +++++..++.++|+.+
T Consensus       122 ~~~~a~~~~~~in~~l  137 (230)
T KOG1792|consen  122 VLALASSLRVEINQAL  137 (230)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6777777777777654

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=93.75  E-value=0.5  Score=37.34  Aligned_cols=67  Identities=13%  Similarity=0.058  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHhhHHcccCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHhhc
Q psy17279        111 TEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENN  177 (198)
Q Consensus       111 ~~~v~~~in~~l~~lr~l~~~~d~~~slk~~~~L~ils~lg~~~s~~tLl~i~~~~~FtvP~~Y~~~  177 (198)
                      ++.+.+.+....++++.++.++|+..|..+++++.+.+.+--+..+..++.+..+..++=|++-...
T Consensus        71 vQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~  137 (156)
T PF08372_consen   71 VQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPL  137 (156)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCC
Confidence            4445556667778999999999999999999999998888888888888888878888887776543

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide

Probab=93.18  E-value=1.5  Score=38.72  Aligned_cols=28  Identities=11%  Similarity=0.299  Sum_probs=21.7

Q ss_pred             cchhhhccccCCcchhHHHHHHHHHHHH
Q psy17279         22 EAVESLVYWRDPKISGAVFGVSLAVLIS   49 (198)
Q Consensus        22 ~~v~dlllWrd~~~S~~vf~~~~~~L~~   49 (198)
                      ..+.+++.|+||..+-.++...++.++.
T Consensus        30 d~vl~il~W~~p~~t~~~L~l~t~~~l~   57 (359)
T PF06398_consen   30 DRVLRILTWTNPDYTLSFLLLYTFLCLN   57 (359)
T ss_pred             HHHHHeEEeCCCCcchHHHHHHHHHHHH
Confidence            5678999999999988887766655443

Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=88.56  E-value=0.83  Score=36.11  Aligned_cols=24  Identities=29%  Similarity=0.648  Sum_probs=20.9

Q ss_pred             cchhhhccccCCcchhHHHHHHHH
Q psy17279         22 EAVESLVYWRDPKISGAVFGVSLA   45 (198)
Q Consensus        22 ~~v~dlllWrd~~~S~~vf~~~~~   45 (198)
                      +++..++.||||..|+....+.+.
T Consensus        83 ERl~allsWrdP~aT~lf~~~clv  106 (156)
T PF08372_consen   83 ERLQALLSWRDPRATALFVVFCLV  106 (156)
T ss_pred             HHHHHhhccCCccHHHHHHHHHHH
Confidence            788899999999999998877654

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	198
2ko2_A	79	Nogo66 Length = 79		1e-16
2g31_A	60	Human Nogo-A Functional Domain: Nogo60 Length = 60		2e-13
2jv5_A	54	Nogo54 Length = 54		9e-11

>pdb|2KO2|A Chain A, Nogo66 Length = 79

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 54/68 (79%)
Query: 72  GFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLV 131
           G RIYK ++QA+QK++EGHPF+ YLE ++++  + V+  + +A+ H ++T+ ELRR+FLV
Sbjct: 12  GMRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLV 71
Query: 132 EDFVDSIK 139
           +D VDS+K
Sbjct: 72  DDLVDSLK 79

>pdb|2G31|A Chain A, Human Nogo-A Functional Domain: Nogo60 Length = 60

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 47/60 (78%)
Query: 74  RIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVED 133
           RIYK ++QA+QK++EGHPF+ YLE ++++  + V+  + +A+ H + T+ ELRR+FLV+D
Sbjct: 1   RIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD 60

>pdb|2JV5|A Chain A, Nogo54 Length = 54

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 41/54 (75%)
Query: 74  RIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRR 127
           RIYK ++QA+QK++EGHPF+ YLE ++++  + V+  + +A+ H + T+ ELRR
Sbjct: 1   RIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRR 54

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
2ko2_A	79	Reticulon-4; NOGO, membrane protein, peripheral, D	3e-26
2g31_A	60	Reticulon-4; NOGO, helix, signaling protein; NMR {	1e-24

>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus} Length = 79

 Score = 95.3 bits (237), Expect = 3e-26
 Identities = 33/70 (47%), Positives = 54/70 (77%)

Query: 70  AIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIF 129
             G RIYK ++QA+QK++EGHPF+ YLE ++++  + V+  + +A+ H ++T+ ELRR+F
Sbjct: 10  PRGMRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLF 69

Query: 130 LVEDFVDSIK 139
           LV+D VDS+K
Sbjct: 70  LVDDLVDSLK 79

>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A Length = 60

 Score = 90.7 bits (225), Expect = 1e-24
 Identities = 28/60 (46%), Positives = 47/60 (78%)

Query: 74  RIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVED 133
           RIYK ++QA+QK++EGHPF+ YLE ++++  + V+  + +A+ H + T+ ELRR+FLV+D
Sbjct: 1   RIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
2ko2_A	79	Reticulon-4; NOGO, membrane protein, peripheral, D	99.45
2g31_A	60	Reticulon-4; NOGO, helix, signaling protein; NMR {	99.18

>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}

Probab=99.45  E-value=2.8e-15  Score=103.67  Aligned_cols=69  Identities=48%  Similarity=0.922  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHhccCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhHHcccCHHHHHH
Q psy17279         71 IGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIK  139 (198)
Q Consensus        71 ~~~~i~~~~~~~~~~~~~~~P~~~yl~~~~~lse~~v~~~~~~v~~~in~~l~~lr~l~~~~d~~~slk  139 (198)
                      ..||+|+++++.+||++++|||++|+|.|+++|+|+++++++.+...+|.++.++|+++++||+.+|+|
T Consensus        11 ~sfRiYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK   79 (79)
T 2ko2_A           11 RGMRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK   79 (79)
T ss_dssp             --CTHHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence            357999999999999999999999999999999999999999999999999999999999999998875

>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A

Probab=99.18  E-value=9.8e-14  Score=91.51  Aligned_cols=60  Identities=47%  Similarity=0.923  Sum_probs=56.0

Q ss_pred             HHHHHHHHHhccCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhHHcccC
Q psy17279         74 RIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVED  133 (198)
Q Consensus        74 ~i~~~~~~~~~~~~~~~P~~~yl~~~~~lse~~v~~~~~~v~~~in~~l~~lr~l~~~~d  133 (198)
                      |+|+++++.++|++++|||++|+|.|+++|+|.++++++.+..++|.++.++|+++++||
T Consensus         1 RiYk~vlqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed   60 (60)
T 2g31_A            1 RIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD   60 (60)
T ss_dssp             CCCCTTTTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred             ChHHHHHHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence            356677788899999999999999999999999999999999999999999999999987

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00