Psyllid ID: psy17351

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGSTKRRKALEHLHEMEDQMKQAQDEIQARKEEEERRQAQVSSRVGEILTPGLKETAPGTPYTPRRTPKRFGL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHcccccEEcccccHHHHHHHHcccccccccccEEEEEEEEcccccccccccEEcccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHccccEEEccccHHHHHHHHHHHHHcccccccEEEEEEEEEEHHHHHHHHEcccHHHHHHHcHHHEEcccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccHHccc
Coil and Loop (DISEMBL)
MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSalfgmgftpdyVVYHELIMTSKEYMQCVTAvdgqwlaelgpmffsvketgksgstKRRKALEHLHEMEDQMKQAQDEIQARKEEEERRQAQVSSRvgeiltpglketapgtpytprrtpkrfgl
Flexible Loop (DISEMBL)
MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFsvketgksgsTKRRKALEHLHEMEDQMKQAQDEIQARKEEEerrqaqvssrvgeiltpglketapgtpytprrtpkrfgl
Low Complexity Region (SEG)
MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGSTKRRKALEHLHEMEDQMKQAQDeiqarkeeeerrqaqVSSRVGEILTPGLKETAPGTPYTPRRTPKRFGL
Disordered region (IsUnstruct)
*********QLKEILIQQKMKLVSCGTDWDVIRKCICSALFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSV******************************************************************************
Disordered Region (DISOPRED)
MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFF***************************************************************************KRFG*
Disordered Region (DISEMBL)
********TQLKEILIQQKMKLVSCGTDWDVIRKCICSALFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKE*********RKALEHLHEM****************************VGEILTPGLKETAPG**************
Disordered Region (DISPRO)
MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGS*KRRKALEHLHEMEDQMKQAQDEIQARKEEEERRQ*******G***************************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGSTKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVSSRVGEILTPGLKETAPGTPYTPRRTPKRFGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q17R09	1227	Pre-mRNA-splicing factor	yes	N/A	0.987	0.130	0.546	3e-51
Q92620	1227	Pre-mRNA-splicing factor	yes	N/A	0.987	0.130	0.546	4e-51
P34498	1131	Probable pre-mRNA-splicin	yes	N/A	0.845	0.121	0.473	6e-38
Q9P774	1173	Pre-mRNA-splicing factor	yes	N/A	0.808	0.111	0.325	3e-20
P15938	1071	Pre-mRNA-splicing factor	yes	N/A	0.512	0.077	0.415	5e-18
Q54F05	1160	ATP-dependent RNA helicas	no	N/A	0.641	0.089	0.318	1e-16
Q09530	1200	Probable pre-mRNA-splicin	no	N/A	0.641	0.086	0.333	2e-16
Q38953	1168	Probable pre-mRNA-splicin	no	N/A	0.641	0.089	0.325	9e-16
Q14562	1220	ATP-dependent RNA helicas	no	N/A	0.641	0.085	0.310	1e-14
A2A4P0	1244	ATP-dependent RNA helicas	no	N/A	0.641	0.083	0.310	1e-14

>sp|Q17R09|PRP16_BOVIN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1

 Score =  200 bits (508), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 105/192 (54%), Positives = 132/192 (68%), Gaps = 32/192 (16%)

Query: 1    MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSA--------------------- 39
            MRKVREVR QLK+I++QQ+M L SCGTDWD++RKCIC+A                     
Sbjct: 1038 MRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTGM 1097

Query: 40   ---------LFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKS 90
                     LFGMG+TPDY+VYHEL+MT+KEYMQCVTAVDG+WLAELGPMF+SVK+ GKS
Sbjct: 1098 PCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKS 1157

Query: 91   GSTKRRKALEHLHEMEDQMKQAQDEIQARKEEEERRQAQVSSRVGEILTPGLKETAPGTP 150
                RR+A E    ME++M  A+++++AR++E+E+R    S R  +I TPG KE   G P
Sbjct: 1158 RQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVRSTKIYTPGRKEQ--GEP 1215

Query: 151  YTPRRTPKRFGL 162
             TPRRTP RFGL
Sbjct: 1216 MTPRRTPARFGL 1227

Probable ATP-binding RNA helicase involved in pre-mRNA splicing.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3

>sp|Q92620|PRP16_HUMAN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2

 Score =  200 bits (508), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 105/192 (54%), Positives = 132/192 (68%), Gaps = 32/192 (16%)

Query: 1    MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSA--------------------- 39
            MRKVREVR QLK+I++QQ+M L SCGTDWD++RKCIC+A                     
Sbjct: 1038 MRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTGM 1097

Query: 40   ---------LFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKS 90
                     LFGMG+TPDY+VYHEL+MT+KEYMQCVTAVDG+WLAELGPMF+SVK+ GKS
Sbjct: 1098 PCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKS 1157

Query: 91   GSTKRRKALEHLHEMEDQMKQAQDEIQARKEEEERRQAQVSSRVGEILTPGLKETAPGTP 150
                RR+A E    ME++M  A+++++AR++E+E+R    S R  +I TPG KE   G P
Sbjct: 1158 RQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVRSTKIYTPGRKEQ--GEP 1215

Query: 151  YTPRRTPKRFGL 162
             TPRRTP RFGL
Sbjct: 1216 MTPRRTPARFGL 1227

Probable ATP-binding RNA helicase involved in pre-mRNA splicing.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|P34498|MOG1_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1 PE=1 SV=2

 Score =  156 bits (394), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 80/169 (47%), Positives = 110/169 (65%), Gaps = 32/169 (18%)

Query: 1    MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSA--------------------- 39
            ++KVREVR QLKEI+   K+ L+S G++WD++RKCICSA                     
Sbjct: 948  LKKVREVRAQLKEIMQDLKLPLISNGSEWDIVRKCICSAYFHNAARLKGIGEYVNVRTGI 1007

Query: 40   ---------LFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKS 90
                     LFGMGF PDYVVYHELIMT+KEYMQCVTAVD  WLAELGPMF+S+KE+ +S
Sbjct: 1008 PCFLHPTSALFGMGFMPDYVVYHELIMTAKEYMQCVTAVDAIWLAELGPMFYSIKESKQS 1067

Query: 91   GSTKRRKALEHLHEMEDQMKQAQDEIQARKEEEER--RQAQVSSRVGEI 137
                + +++  +  ME +M++AQ E++ RKEE ++  ++ + S RV E+
Sbjct: 1068 RKELKMESVRTVETMEAEMREAQKEMERRKEESDKAFKRPESSRRVVEV 1116

Probable ATP-binding RNA helicase involved in pre-mRNA splicing.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q9P774|PRP16_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp16 PE=3 SV=2

 Score = 97.4 bits (241), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 91/163 (55%), Gaps = 32/163 (19%)

Query: 1    MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSA--------------------- 39
            +++ R++R QL EI+ +QK+ L S  +DWD++R+ +CSA                     
Sbjct: 998  LKRARDIRQQLVEIMSKQKISLESV-SDWDIVRRVLCSAYFHQAACAKGIGEYVHLRSGM 1056

Query: 40   ---------LFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKS 90
                     L+G+G+ PDYV+YHEL++TSKEYM  VT+VD  WLAE G +++SVKE  ++
Sbjct: 1057 PCHLHVTSSLYGLGYLPDYVIYHELVLTSKEYMNIVTSVDPYWLAEFGGVYYSVKERFRN 1116

Query: 91   GSTKRRKALEHLHEMEDQMKQAQDEIQARKEEEERRQAQVSSR 133
             +    +      +++ Q+  A  E+ A+++  + ++   S R
Sbjct: 1117 ETESYDRVFSSKPQLDAQIA-ADRELDAKQKLAKNQEPVKSKR 1158

Probable ATP-binding RNA helicase involved in pre-mRNA splicing.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|P15938|PRP16_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP16 PE=1 SV=2

 Score = 90.5 bits (223), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/113 (41%), Positives = 62/113 (54%), Gaps = 30/113 (26%)

Query: 3   KVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICS------------------------ 38
           + R++R QL  IL  QK+ ++S G DWD+I+KCICS                        
Sbjct: 874 RARDIRDQLLTILKSQKIPVISSGKDWDIIKKCICSGFAHQAAKITGLRNYVHLKTGVSV 933

Query: 39  ------ALFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVK 85
                 AL G+G  P YVVYHEL+MTSKEY+ CVT+VD  WL E G + + +K
Sbjct: 934 QLHPTSALHGLGDLPPYVVYHELLMTSKEYICCVTSVDPFWLMEYGGLLYDIK 986

Influences the fidelity of branchpoint recognition in yeast splicing. This is RNA-dependent ATPase which is essential for viability. It may mediate one of the many ATP-requiring steps of spliceosome assembly and that accuracy of branchpoint recognition may be coupled to ATP binding and/or hydrolysis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 28/132 (21%)

Query: 1    MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALFG------------------ 42
            +R+ ++VR QL  I+ + K+ ++S G ++  I+K ICS  F                   
Sbjct: 1015 LRRAQDVRKQLITIMDRYKLDIISAGRNYTKIQKAICSGFFANASKKDPNEGYKTLVEGQ 1074

Query: 43   ----------MGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGS 92
                          PD+V+YHEL+MT+KEYM+ V  +D +WL EL P FF   +  K   
Sbjct: 1075 PVYIHPSSTLFNRNPDWVIYHELVMTTKEYMREVCTIDPKWLVELAPKFFKTSDPNKISK 1134

Query: 93   TKRRKALEHLHE 104
             KR++ +E L++
Sbjct: 1135 RKRKEKIEPLYD 1146

Facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 28/132 (21%)

Query: 1    MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALFGM--------GF------- 45
            M++ +++R QL  I+ + K+ +VSCG D   ++K ICS  F          G+       
Sbjct: 1047 MKRAQDIRKQLLGIMDRHKLLMVSCGRDVSRVQKAICSGFFRNAAKRDPQEGYRTLTDGQ 1106

Query: 46   -------------TPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGS 92
                          P++VVYHEL+MT+KEYM+ VTA+D +WL E  P FF + ++ K  +
Sbjct: 1107 NVYIHPSSACFQQQPEWVVYHELVMTTKEYMREVTAIDPKWLVEFAPSFFKIGDSTKLST 1166

Query: 93   TKRRKALEHLHE 104
             KR + ++ L +
Sbjct: 1167 FKRNQKIDPLFD 1178

Could act late in the splicing of pre-mRNA and mediate the release of the spliced mRNA from spliceosomes.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q38953|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2

 Score = 82.8 bits (203), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 28/132 (21%)

Query: 1    MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALFGMGF--------------- 45
            +R+ ++VR QL  I+ + K+ +V+ G ++  IRK I +  F  G                
Sbjct: 1022 LRRAQDVRKQLLSIMDKYKLDVVTAGKNFTKIRKAITAGFFFHGARKDPQEGYRTLVENQ 1081

Query: 46   -------------TPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGS 92
                          PD+V+YH+L+MT+KEYM+ VT +D +WL EL P FF V +  K   
Sbjct: 1082 PVYIHPSSALFQRQPDWVIYHDLVMTTKEYMREVTVIDPKWLVELAPRFFKVSDPTKMSK 1141

Query: 93   TKRRKALEHLHE 104
             KR++ +E L++
Sbjct: 1142 RKRQERIEPLYD 1153

Could act late in the splicing of pre-mRNA and mediate the release of the spliced mRNA from spliceosomes.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q14562|DHX8_HUMAN ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 28/132 (21%)

Query: 1    MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALFG------------------ 42
            +R+ +++R Q+  I+ + K+ +VSCG     ++K ICS  F                   
Sbjct: 1072 LRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQ 1131

Query: 43   ----------MGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGS 92
                          P++VVYHEL++T+KEYM+ VT +D +WL E  P FF V +  K   
Sbjct: 1132 VVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTKLSK 1191

Query: 93   TKRRKALEHLHE 104
             K+++ LE L+ 
Sbjct: 1192 QKKQQRLEPLYN 1203

Facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|A2A4P0|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 28/132 (21%)

Query: 1    MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALFG------------------ 42
            +R+ +++R Q+  I+ + K+ +VSCG     ++K ICS  F                   
Sbjct: 1096 LRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQ 1155

Query: 43   ----------MGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGS 92
                          P++VVYHEL++T+KEYM+ VT +D +WL E  P FF V +  K   
Sbjct: 1156 VVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTKLSK 1215

Query: 93   TKRRKALEHLHE 104
             K+++ LE L+ 
Sbjct: 1216 QKKQQRLEPLYN 1227

Facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
110764513	1093	PREDICTED: pre-mRNA-splicing factor ATP-	0.981	0.145	0.619	1e-60
322785811	1134	hypothetical protein SINV_02380 [Solenop	0.981	0.140	0.619	1e-60
307211051	1130	Pre-mRNA-splicing factor ATP-dependent R	0.981	0.140	0.619	1e-60
307188795	1136	Pre-mRNA-splicing factor ATP-dependent R	0.981	0.139	0.619	1e-60
332025135	1132	Pre-mRNA-splicing factor ATP-dependent R	0.981	0.140	0.619	1e-60
350421485	1152	PREDICTED: pre-mRNA-splicing factor ATP-	0.981	0.138	0.619	2e-60
383860116	1139	PREDICTED: pre-mRNA-splicing factor ATP-	0.981	0.139	0.619	2e-60
340726893	1152	PREDICTED: pre-mRNA-splicing factor ATP-	0.981	0.138	0.619	3e-60
380018977	1137	PREDICTED: LOW QUALITY PROTEIN: pre-mRNA	0.981	0.139	0.614	4e-60
242012723	1186	pre-mRNA-splicing factor ATP-dependent R	0.962	0.131	0.614	1e-58

>gi|110764513|ref|XP_001122500.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Apis mellifera]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 141/192 (73%), Gaps = 33/192 (17%)

Query: 1    MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSA--------------------- 39
            MRKVREVR QL+EIL QQKM++VSCGTDWD++RKCICSA                     
Sbjct: 905  MRKVREVRQQLEEILKQQKMEVVSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCRTGM 964

Query: 40   ---------LFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKS 90
                     LFGMGFTPDYVVYHEL+MT+KEYMQCVTAVDG WLAELGPMFFSVKETG+S
Sbjct: 965  PCHLHPTSALFGMGFTPDYVVYHELVMTAKEYMQCVTAVDGHWLAELGPMFFSVKETGRS 1024

Query: 91   GSTKRRKALEHLHEMEDQMKQAQDEIQARKEEEERRQAQVSSRVGEILTPGLKETAPGTP 150
            G  KRR+A++HLHEME QMK+A++E++AR +E+  R+ Q S R  EILTPG++E  PGTP
Sbjct: 1025 GRAKRRQAMQHLHEMEGQMKEAEEEMKARAQEQLERE-QASIRKKEILTPGIRE--PGTP 1081

Query: 151  YTPRRTPKRFGL 162
               R+TP R GL
Sbjct: 1082 APYRKTPSRLGL 1093

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785811|gb|EFZ12430.1| hypothetical protein SINV_02380 [Solenopsis invicta]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 140/192 (72%), Gaps = 33/192 (17%)

Query: 1    MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSA--------------------- 39
            MRKVREVR+QL+EIL QQKM +VSCGTDWD++RKCICSA                     
Sbjct: 946  MRKVREVRSQLEEILKQQKMDVVSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCRTGM 1005

Query: 40   ---------LFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKS 90
                     LFGMGFTPDYVVYHEL+MT+KEYMQCVTAVDG WLAELGPMFFSVKETG+S
Sbjct: 1006 PCHLHPTSALFGMGFTPDYVVYHELVMTAKEYMQCVTAVDGHWLAELGPMFFSVKETGRS 1065

Query: 91   GSTKRRKALEHLHEMEDQMKQAQDEIQARKEEEERRQAQVSSRVGEILTPGLKETAPGTP 150
            G  KRR+A++HLHEME QMK+A++E++AR +E+  R+ Q S R  EILTPG++E  PGTP
Sbjct: 1066 GRAKRRQAMQHLHEMEHQMKEAEEEMKARAQEQLERE-QASVRKKEILTPGIRE--PGTP 1122

Query: 151  YTPRRTPKRFGL 162
               R TP R GL
Sbjct: 1123 APYRNTPGRLGL 1134

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211051|gb|EFN87303.1| Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Harpegnathos saltator]

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 140/192 (72%), Gaps = 33/192 (17%)

Query: 1    MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSA--------------------- 39
            MRKVREVR+QL+EIL QQKM +VSCGTDWD++RKCICSA                     
Sbjct: 942  MRKVREVRSQLEEILKQQKMDVVSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCRTGM 1001

Query: 40   ---------LFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKS 90
                     LFGMGFTPDYVVYHEL+MT+KEYMQCVTAVDG WLAELGPMFFSVKETG+S
Sbjct: 1002 PCHLHPTSALFGMGFTPDYVVYHELVMTAKEYMQCVTAVDGHWLAELGPMFFSVKETGRS 1061

Query: 91   GSTKRRKALEHLHEMEDQMKQAQDEIQARKEEEERRQAQVSSRVGEILTPGLKETAPGTP 150
            G  KRR+A++HLHEME QMK+A++E++AR +E+  R+ Q S R  EILTPG++E  PGTP
Sbjct: 1062 GRAKRRQAMQHLHEMEHQMKEAEEEMKARAQEQLERE-QASVRKKEILTPGIRE--PGTP 1118

Query: 151  YTPRRTPKRFGL 162
               R TP R GL
Sbjct: 1119 APYRNTPGRLGL 1130

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307188795|gb|EFN73387.1| Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Camponotus floridanus]

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 140/192 (72%), Gaps = 33/192 (17%)

Query: 1    MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSA--------------------- 39
            MRKVREVR+QL+EIL QQKM +VSCGTDWD++RKCICSA                     
Sbjct: 948  MRKVREVRSQLEEILKQQKMDVVSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCRTGM 1007

Query: 40   ---------LFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKS 90
                     LFGMGFTPDYVVYHEL+MT+KEYMQCVTAVDG WLAELGPMFFSVKETG+S
Sbjct: 1008 PCHLHPTSALFGMGFTPDYVVYHELVMTAKEYMQCVTAVDGHWLAELGPMFFSVKETGRS 1067

Query: 91   GSTKRRKALEHLHEMEDQMKQAQDEIQARKEEEERRQAQVSSRVGEILTPGLKETAPGTP 150
            G  KRR+A++HLHEME QMK+A++E++AR +E+  R+ Q S R  EILTPG++E  PGTP
Sbjct: 1068 GRAKRRQAMQHLHEMEHQMKEAEEEMKARAQEQLERE-QASVRKKEILTPGIRE--PGTP 1124

Query: 151  YTPRRTPKRFGL 162
               R TP R GL
Sbjct: 1125 APYRNTPGRLGL 1136

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025135|gb|EGI65315.1| Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Acromyrmex echinatior]

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 140/192 (72%), Gaps = 33/192 (17%)

Query: 1    MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSA--------------------- 39
            MRKVREVR+QL+EIL QQKM +VSCGTDWD++RKCICSA                     
Sbjct: 944  MRKVREVRSQLEEILKQQKMDVVSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCRTGM 1003

Query: 40   ---------LFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKS 90
                     LFGMGFTPDYVVYHEL+MT+KEYMQCVTAVDG WLAELGPMFFSVKETG+S
Sbjct: 1004 PCHLHPTSALFGMGFTPDYVVYHELVMTAKEYMQCVTAVDGHWLAELGPMFFSVKETGRS 1063

Query: 91   GSTKRRKALEHLHEMEDQMKQAQDEIQARKEEEERRQAQVSSRVGEILTPGLKETAPGTP 150
            G  KRR+A++HLHEME QMK+A++E++AR +E+  R+ Q S R  EILTPG++E  PGTP
Sbjct: 1064 GRAKRRQAMQHLHEMEHQMKEAEEEMKARAQEQLERE-QASVRKKEILTPGIRE--PGTP 1120

Query: 151  YTPRRTPKRFGL 162
               R TP R GL
Sbjct: 1121 APYRNTPGRLGL 1132

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350421485|ref|XP_003492857.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Bombus impatiens]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 140/192 (72%), Gaps = 33/192 (17%)

Query: 1    MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSA--------------------- 39
            MRKVREVR QL+EIL QQKM++VSCGTDWD++RKCICSA                     
Sbjct: 964  MRKVREVRQQLEEILKQQKMEVVSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCRTGM 1023

Query: 40   ---------LFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKS 90
                     LFGMGFTPDYVVYHEL+MT KEYMQCVTAVDG WLAELGPMFFSVKETG+S
Sbjct: 1024 PCHLHPTSALFGMGFTPDYVVYHELVMTGKEYMQCVTAVDGHWLAELGPMFFSVKETGRS 1083

Query: 91   GSTKRRKALEHLHEMEDQMKQAQDEIQARKEEEERRQAQVSSRVGEILTPGLKETAPGTP 150
            G  KRR+A++HLHEME QMK+A++E++AR +E+  R+ Q S R  EILTPG++E  PGTP
Sbjct: 1084 GRAKRRQAMQHLHEMEGQMKEAEEEMKARAQEQLERE-QASIRKKEILTPGIRE--PGTP 1140

Query: 151  YTPRRTPKRFGL 162
               R+TP R GL
Sbjct: 1141 APYRKTPSRLGL 1152

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860116|ref|XP_003705537.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Megachile rotundata]

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 141/192 (73%), Gaps = 33/192 (17%)

Query: 1    MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSA--------------------- 39
            MRKVREVR QL+EIL QQKM++VSCGTDWD++RKCICSA                     
Sbjct: 951  MRKVREVRQQLEEILKQQKMEVVSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCRTGM 1010

Query: 40   ---------LFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKS 90
                     LFGMGFTPDYVVYHEL+MT+KEYMQCVTAVDG WLAELGPMFFSVKETG+S
Sbjct: 1011 PCHLHPTSALFGMGFTPDYVVYHELVMTAKEYMQCVTAVDGHWLAELGPMFFSVKETGRS 1070

Query: 91   GSTKRRKALEHLHEMEDQMKQAQDEIQARKEEEERRQAQVSSRVGEILTPGLKETAPGTP 150
            G  KRR+A++HLHEME QMK+A++E++AR +E+  R+ Q S R  EILTPG++E  PGTP
Sbjct: 1071 GRAKRRQAMQHLHEMEGQMKEAEEEMKARAQEQLERE-QASIRKQEILTPGIRE--PGTP 1127

Query: 151  YTPRRTPKRFGL 162
               R+TP R GL
Sbjct: 1128 APYRKTPGRLGL 1139

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726893|ref|XP_003401786.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Bombus terrestris]

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 140/192 (72%), Gaps = 33/192 (17%)

Query: 1    MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSA--------------------- 39
            MRKVREVR QL+EIL QQKM++VSCGTDWD++RKCICSA                     
Sbjct: 964  MRKVREVRQQLEEILKQQKMEVVSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCRTGM 1023

Query: 40   ---------LFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKS 90
                     LFGMGFTPDYVVYHEL+MT KEYMQCVTAVDG WLAELGPMFFSVKETG+S
Sbjct: 1024 PCHLHPTSALFGMGFTPDYVVYHELVMTGKEYMQCVTAVDGHWLAELGPMFFSVKETGRS 1083

Query: 91   GSTKRRKALEHLHEMEDQMKQAQDEIQARKEEEERRQAQVSSRVGEILTPGLKETAPGTP 150
            G  KRR+A++HLHEME QMK+A++E++AR +E+  R+ Q S R  EILTPG++E  PGTP
Sbjct: 1084 GRAKRRQAMQHLHEMEGQMKEAEEEMKARAQEQLERE-QASIRKKEILTPGIRE--PGTP 1140

Query: 151  YTPRRTPKRFGL 162
               R+TP R GL
Sbjct: 1141 APYRKTPSRLGL 1152

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018977|ref|XP_003693395.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Apis florea]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 140/192 (72%), Gaps = 33/192 (17%)

Query: 1    MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSA--------------------- 39
            MRKVREVR QL+EIL QQKM++VSCGTDWD++RKCICSA                     
Sbjct: 949  MRKVREVRQQLEEILKQQKMEVVSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCRTGM 1008

Query: 40   ---------LFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKS 90
                     LFGMGFTPDYVVYHEL+MT+KEYMQCVTAVDG WLAELGPMFFSVK TG+S
Sbjct: 1009 PCHLHPTSALFGMGFTPDYVVYHELVMTAKEYMQCVTAVDGHWLAELGPMFFSVKXTGRS 1068

Query: 91   GSTKRRKALEHLHEMEDQMKQAQDEIQARKEEEERRQAQVSSRVGEILTPGLKETAPGTP 150
            G  KRR+A++HLHEME QMK+A++E++AR +E+  R+ Q S R  EILTPG++E  PGTP
Sbjct: 1069 GRAKRRQAMQHLHEMEGQMKEAEEEMKARAQEQLERE-QASIRKKEILTPGIRE--PGTP 1125

Query: 151  YTPRRTPKRFGL 162
               R+TP R GL
Sbjct: 1126 APYRKTPSRLGL 1137

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012723|ref|XP_002427077.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp16, putative [Pediculus humanus corporis] gi|212511335|gb|EEB14339.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp16, putative [Pediculus humanus corporis]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 138/192 (71%), Gaps = 36/192 (18%)

Query: 1    MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSA--------------------- 39
            MRKVREVR QLK+I+ QQK+++VSCGTDWD++RKCICSA                     
Sbjct: 1001 MRKVREVRQQLKDIMEQQKIEVVSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCRTGM 1060

Query: 40   ---------LFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKS 90
                     LFGMG+TPDYVVYHELIMT+KEYMQCVTAVDG WLAELGPMFFS+KETGKS
Sbjct: 1061 PCHLHPTSALFGMGYTPDYVVYHELIMTAKEYMQCVTAVDGHWLAELGPMFFSLKETGKS 1120

Query: 91   GSTKRRKALEHLHEMEDQMKQAQDEIQARKEEEERRQAQVSSRVGEILTPGLKETAPGTP 150
            G  KR++ALEHL EME QMK AQ+EI+ARKEE E+R+   S R  +ILTPG+KE     P
Sbjct: 1121 GRAKRKRALEHLQEMESQMKIAQEEIKARKEEAEKREL-ASQRKTDILTPGIKE-----P 1174

Query: 151  YTPRRTPKRFGL 162
             + R+TP R GL
Sbjct: 1175 GSVRKTPARLGL 1186

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
UNIPROTKB|B4DVG8	539	DHX38 "Uncharacterized protein	0.759	0.228	0.576	3.4e-50
UNIPROTKB|F1S3A8	766	DHX38 "Uncharacterized protein	0.759	0.160	0.576	1.2e-48
ZFIN|ZDB-GENE-040426-1144	1258	dhx38 "DEAH (Asp-Glu-Ala-His)	0.759	0.097	0.568	1.6e-48
UNIPROTKB|E1C094	1164	E1C094 "Uncharacterized protei	0.759	0.105	0.568	5.5e-48
UNIPROTKB|F1NY80	1170	F1NY80 "Uncharacterized protei	0.759	0.105	0.568	5.6e-48
UNIPROTKB|F1MVJ1	1226	DHX38 "Pre-mRNA-splicing facto	0.759	0.100	0.576	8.3e-48
UNIPROTKB|E2RC56	1226	DHX38 "Uncharacterized protein	0.759	0.100	0.576	8.3e-48
UNIPROTKB|Q17R09	1227	DHX38 "Pre-mRNA-splicing facto	0.759	0.100	0.576	8.3e-48
UNIPROTKB|Q92620	1227	DHX38 "Pre-mRNA-splicing facto	0.759	0.100	0.576	8.3e-48
RGD|1310345	1228	Dhx38 "DEAH (Asp-Glu-Ala-His)	0.759	0.100	0.576	8.4e-48

UNIPROTKB|B4DVG8 DHX38 "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 363 (132.8 bits), Expect = 3.4e-50, Sum P(2) = 3.4e-50
 Identities = 72/125 (57%), Positives = 86/125 (68%)

Query:    38 SALFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGSTKRRK 97
             S+LFGMG+TPDY+VYHEL+MT+KEYMQCVTAVDG+WLAELGPMF+SVK+ GKS    RR+
Sbjct:   417 SSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRQENRRR 476

Query:    98 ALEHLHEMEDQMKQAQDXXXXXXXXXXXXXXXVSSRVGEILTPGLKETAPGTPYTPRRTP 157
             A E    ME++M  A++                S R  +I TPG KE   G P TPRRTP
Sbjct:   477 AKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVRSTKIYTPGRKEQ--GEPMTPRRTP 534

Query:   158 KRFGL 162
              RFGL
Sbjct:   535 ARFGL 539

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

UNIPROTKB|F1S3A8 DHX38 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 363 (132.8 bits), Expect = 1.2e-48, Sum P(2) = 1.2e-48
 Identities = 72/125 (57%), Positives = 86/125 (68%)

Query:    38 SALFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGSTKRRK 97
             S+LFGMG+TPDY+VYHEL+MT+KEYMQCVTAVDG+WLAELGPMF+SVK+ GKS    RR+
Sbjct:   644 SSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRQENRRR 703

Query:    98 ALEHLHEMEDQMKQAQDXXXXXXXXXXXXXXXVSSRVGEILTPGLKETAPGTPYTPRRTP 157
             A E    ME++M  A++                S R  +I TPG KE   G P TPRRTP
Sbjct:   704 AKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVRSTKIYTPGRKEQ--GEPMTPRRTP 761

Query:   158 KRFGL 162
              RFGL
Sbjct:   762 ARFGL 766

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1144 dhx38 "DEAH (Asp-Glu-Ala-His) box polypeptide 38" [Danio rerio (taxid:7955)]

 Score = 366 (133.9 bits), Expect = 1.6e-48, Sum P(2) = 1.6e-48
 Identities = 71/125 (56%), Positives = 86/125 (68%)

Query:    38 SALFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGSTKRRK 97
             SALFGMG+TPDY++YHEL+MT+KEYMQCVTAVDG+WLAELGPMF+S+K  GKS    RR+
Sbjct:  1136 SALFGMGYTPDYIIYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQENRRR 1195

Query:    98 ALEHLHEMEDQMKQAQDXXXXXXXXXXXXXXXVSSRVGEILTPGLKETAPGTPYTPRRTP 157
             A E +  ME++M  AQ+                S R  +I TPG KE    TP TP+RTP
Sbjct:  1196 AKEEITNMEEEMSLAQEQIRARKEEQDRKNNLGSVRAVKICTPGRKEEM--TPMTPKRTP 1253

Query:   158 KRFGL 162
              RFGL
Sbjct:  1254 ARFGL 1258

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E1C094 E1C094 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 363 (132.8 bits), Expect = 5.5e-48, Sum P(2) = 5.5e-48
 Identities = 71/125 (56%), Positives = 86/125 (68%)

Query:    38 SALFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGSTKRRK 97
             S+LFGMG+TPDY+VYHEL+MT+KEYMQCVTAVDG+WLAELGPMF+S+K  GKS    RR+
Sbjct:  1042 SSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQENRRR 1101

Query:    98 ALEHLHEMEDQMKQAQDXXXXXXXXXXXXXXXVSSRVGEILTPGLKETAPGTPYTPRRTP 157
             A E    ME++M  A++                S+R  +I TPG KE   G P TPRRTP
Sbjct:  1102 AKEEASAMEEEMALAEEQLRARREEQERRNPLGSARCTKIYTPGRKEQ--GEPLTPRRTP 1159

Query:   158 KRFGL 162
              RFGL
Sbjct:  1160 ARFGL 1164

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1NY80 F1NY80 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 363 (132.8 bits), Expect = 5.6e-48, Sum P(2) = 5.6e-48
 Identities = 71/125 (56%), Positives = 86/125 (68%)

Query:    38 SALFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGSTKRRK 97
             S+LFGMG+TPDY+VYHEL+MT+KEYMQCVTAVDG+WLAELGPMF+S+K  GKS    RR+
Sbjct:  1048 SSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQENRRR 1107

Query:    98 ALEHLHEMEDQMKQAQDXXXXXXXXXXXXXXXVSSRVGEILTPGLKETAPGTPYTPRRTP 157
             A E    ME++M  A++                S+R  +I TPG KE   G P TPRRTP
Sbjct:  1108 AKEEASAMEEEMALAEEQLRARREEQERRNPLGSARCTKIYTPGRKEQ--GEPLTPRRTP 1165

Query:   158 KRFGL 162
              RFGL
Sbjct:  1166 ARFGL 1170

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|F1MVJ1 DHX38 "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16" [Bos taurus (taxid:9913)]

 Score = 363 (132.8 bits), Expect = 8.3e-48, Sum P(2) = 8.3e-48
 Identities = 72/125 (57%), Positives = 86/125 (68%)

Query:    38 SALFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGSTKRRK 97
             S+LFGMG+TPDY+VYHEL+MT+KEYMQCVTAVDG+WLAELGPMF+SVK+ GKS    RR+
Sbjct:  1104 SSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRQENRRR 1163

Query:    98 ALEHLHEMEDQMKQAQDXXXXXXXXXXXXXXXVSSRVGEILTPGLKETAPGTPYTPRRTP 157
             A E    ME++M  A++                S R  +I TPG KE   G P TPRRTP
Sbjct:  1164 AKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVRSTKIYTPGRKEQ--GEPMTPRRTP 1221

Query:   158 KRFGL 162
              RFGL
Sbjct:  1222 ARFGL 1226

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RC56 DHX38 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 363 (132.8 bits), Expect = 8.3e-48, Sum P(2) = 8.3e-48
 Identities = 72/125 (57%), Positives = 86/125 (68%)

Query:    38 SALFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGSTKRRK 97
             S+LFGMG+TPDY+VYHEL+MT+KEYMQCVTAVDG+WLAELGPMF+SVK+ GKS    RR+
Sbjct:  1104 SSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRQENRRR 1163

Query:    98 ALEHLHEMEDQMKQAQDXXXXXXXXXXXXXXXVSSRVGEILTPGLKETAPGTPYTPRRTP 157
             A E    ME++M  A++                S R  +I TPG KE   G P TPRRTP
Sbjct:  1164 AKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVRSTKIYTPGRKEQ--GEPMTPRRTP 1221

Query:   158 KRFGL 162
              RFGL
Sbjct:  1222 ARFGL 1226

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q17R09 DHX38 "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16" [Bos taurus (taxid:9913)]

 Score = 363 (132.8 bits), Expect = 8.3e-48, Sum P(2) = 8.3e-48
 Identities = 72/125 (57%), Positives = 86/125 (68%)

Query:    38 SALFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGSTKRRK 97
             S+LFGMG+TPDY+VYHEL+MT+KEYMQCVTAVDG+WLAELGPMF+SVK+ GKS    RR+
Sbjct:  1105 SSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRQENRRR 1164

Query:    98 ALEHLHEMEDQMKQAQDXXXXXXXXXXXXXXXVSSRVGEILTPGLKETAPGTPYTPRRTP 157
             A E    ME++M  A++                S R  +I TPG KE   G P TPRRTP
Sbjct:  1165 AKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVRSTKIYTPGRKEQ--GEPMTPRRTP 1222

Query:   158 KRFGL 162
              RFGL
Sbjct:  1223 ARFGL 1227

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q92620 DHX38 "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16" [Homo sapiens (taxid:9606)]

 Score = 363 (132.8 bits), Expect = 8.3e-48, Sum P(2) = 8.3e-48
 Identities = 72/125 (57%), Positives = 86/125 (68%)

Query:    38 SALFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGSTKRRK 97
             S+LFGMG+TPDY+VYHEL+MT+KEYMQCVTAVDG+WLAELGPMF+SVK+ GKS    RR+
Sbjct:  1105 SSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRQENRRR 1164

Query:    98 ALEHLHEMEDQMKQAQDXXXXXXXXXXXXXXXVSSRVGEILTPGLKETAPGTPYTPRRTP 157
             A E    ME++M  A++                S R  +I TPG KE   G P TPRRTP
Sbjct:  1165 AKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVRSTKIYTPGRKEQ--GEPMTPRRTP 1222

Query:   158 KRFGL 162
              RFGL
Sbjct:  1223 ARFGL 1227

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;TAS

GO:0005634 "nucleus" evidence=NAS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006369 "termination of RNA polymerase II transcription" evidence=TAS

GO:0006406 "mRNA export from nucleus" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0031124 "mRNA 3'-end processing" evidence=TAS

RGD|1310345 Dhx38 "DEAH (Asp-Glu-Ala-His) box polypeptide 38" [Rattus norvegicus (taxid:10116)]

 Score = 363 (132.8 bits), Expect = 8.4e-48, Sum P(2) = 8.4e-48
 Identities = 72/125 (57%), Positives = 86/125 (68%)

Query:    38 SALFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGSTKRRK 97
             S+LFGMG+TPDY+VYHEL+MT+KEYMQCVTAVDG+WLAELGPMF+SVK+ GKS    RR+
Sbjct:  1106 SSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRQENRRR 1165

Query:    98 ALEHLHEMEDQMKQAQDXXXXXXXXXXXXXXXVSSRVGEILTPGLKETAPGTPYTPRRTP 157
             A E    ME++M  A++                S R  +I TPG KE   G P TPRRTP
Sbjct:  1166 AKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVRSTKIYTPGRKEQ--GEPMTPRRTP 1223

Query:   158 KRFGL 162
              RFGL
Sbjct:  1224 ARFGL 1228

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q17R09	PRP16_BOVIN	3, ., 6, ., 4, ., 1, 3	0.5468	0.9876	0.1303	yes	N/A
Q92620	PRP16_HUMAN	3, ., 6, ., 4, ., 1, 3	0.5468	0.9876	0.1303	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	162
pfam07717	109	pfam07717, OB_NTP_bind, Oligonucleotide/oligosacch	4e-21

>gnl|CDD|219532 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding (OB)-fold

 Score = 82.4 bits (204), Expect = 4e-21
 Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 36/109 (33%)

Query: 9   TQLKEILIQQKMK------LVSCGTDWDVIRKCICSALF----------GMGFT------ 46
            QL EIL +  +       L S   D+++IRK +C+ LF          G   T      
Sbjct: 1   KQLLEILERLGLPEEPSSLLNSSSNDYELIRKALCAGLFPNVARLVDEKGEYKTLKEGQP 60

Query: 47  --------------PDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMF 81
                         P++VVYHEL+ T+KEYM+ VTA+D +WL EL P +
Sbjct: 61  VFIHPSSVLFGKKPPEWVVYHELVETTKEYMRDVTAIDPEWLLELAPHY 109

This family is found towards the C-terminus of the DEAD-box helicases (pfam00270). In these helicases it is apparently always found in association with pfam04408. There do seem to be a couple of instances where it occurs by itself - . The structure PDB:3i4u adopts an OB-fold. helicases (pfam00270). In these helicases it is apparently always found in association with pfam04408. This C-terminal domain of the yeast helicase contains an oligonucleotide/oligosaccharide-binding (OB)-fold which seems to be placed at the entrance of the putative nucleic acid cavity. It also constitutes the binding site for the G-patch-containing domain of Pfa1p. When found on DEAH/RHA helicases, this domain is central to the regulation of the helicase activity through its binding of both RNA and G-patch domain proteins. Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
KOG0924|consensus	1042		99.96
KOG0922|consensus	674		99.82
KOG0925|consensus	699		99.82
KOG0923|consensus	902		99.71
PF07717	114	OB_NTP_bind: Oligonucleotide/oligosaccharide-bindi	99.69
PRK11131	1294	ATP-dependent RNA helicase HrpA; Provisional	99.68
TIGR01967	1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	99.36
KOG0926|consensus	1172		98.42
COG1643	845	HrpA HrpA-like helicases [DNA replication, recombi	96.45
KOG0920|consensus	924		94.3
PRK11664	812	ATP-dependent RNA helicase HrpB; Provisional	82.35

>KOG0924|consensus

Probab=99.96  E-value=4.4e-30  Score=237.10  Aligned_cols=141  Identities=50%  Similarity=0.898  Sum_probs=122.8

Q ss_pred             CccHHHHHHHHHHHHHHcCCcccccCcchhhhHHHHHhhhh------------------------------cCCCCCCEE
Q psy17351          1 MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALF------------------------------GMGFTPDYV   50 (162)
Q Consensus         1 L~~A~~IR~QL~~i~~r~~l~~~s~~~d~d~IrKcL~s~lf------------------------------~~~~~P~~V   50 (162)
                      |++|++||.||++|++.+++++.|| +|||.|+||||+++|                              +. +.|+||
T Consensus       863 L~~arevR~ql~~il~~l~~~l~S~-~dwdivrKCIcs~~fhn~Arlkg~g~YV~~~tg~~c~lHPsS~L~g~-y~p~Yi  940 (1042)
T KOG0924|consen  863 LKKAREVRRQLLEILKQLKLPLISS-DDWDIVRKCICSAYFHNAARLKGIGEYVNLSTGIPCHLHPSSVLHGL-YTPDYI  940 (1042)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccC-chHHHHHHHHHHHHHHHHHHhccCceEEEccCCcceeecchHhhhcC-CCCCee
Confidence            5789999999999999999999999 899999999999665                              23 699999


Q ss_pred             EehhhhhccccccccceeechhhHHHhcccceeccCCCCCchhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy17351         51 VYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGSTKRRKALEHLHEMEDQMKQAQDEIQARKEEEERRQAQV  130 (162)
Q Consensus        51 VY~ELv~TsK~YmR~VT~Idp~WL~e~aP~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (162)
                      |||||++|+++||+|||+|+|+||.|++|.||++++...+  +.+....++...||++|..++.....++.+...+..+.
T Consensus       941 vyhel~~T~keym~cvT~v~~~wl~E~gp~~y~ik~~~~s--e~k~~~~ed~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 1018 (1042)
T KOG0924|consen  941 VYHELLMTTKEYMQCVTSVSPEWLAELGPMFYSIKEAVTS--EHKHPVVEDGSDMEEEMFKAARDLVGRRLESKKASDKN 1018 (1042)
T ss_pred             eehHHHHhHHHHHHHHhhCCHHHHHHhCceeEeccccccc--hhccccccccchhhhhHHHHHHHHHHhhccchhccccc
Confidence            9999999999999999999999999999999999988877  67777888899999999998887777766665554233


Q ss_pred             ccCcceeecCCCCCC
Q psy17351        131 SSRVGEILTPGLKET  145 (162)
Q Consensus       131 ~~~~~~i~~~g~~~~  145 (162)
                      ..+..+|.+||.+++
T Consensus      1019 ~~~~~k~~~~~~~~e 1033 (1042)
T KOG0924|consen 1019 YKRSTKINEPGEKKE 1033 (1042)
T ss_pred             hhhhhhhcCcccccc
Confidence            334689999999975

>KOG0922|consensus

Probab=99.82  E-value=9.3e-21  Score=174.61  Aligned_cols=87  Identities=43%  Similarity=0.886  Sum_probs=80.3

Q ss_pred             CccHHHHHHHHHHHHHHcCCcccccCcchhhhHHHHHhhhh----------------------------cCCCCCCEEEe
Q psy17351          1 MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALF----------------------------GMGFTPDYVVY   52 (162)
Q Consensus         1 L~~A~~IR~QL~~i~~r~~l~~~s~~~d~d~IrKcL~s~lf----------------------------~~~~~P~~VVY   52 (162)
                      |++|.+||+||..||.+++++..||+.|.+.|+||||+|+|                            +++.+|+||||
T Consensus       557 l~~a~~ir~QL~~i~~~~~~~~~s~~~d~~~i~k~l~aGff~N~A~~~~~~~Yrti~~~~~v~IHPSS~l~~~~p~~viy  636 (674)
T KOG0922|consen  557 LKRAKDIRKQLRRILDKFGLPVSSCGGDMEKIRKCLCAGFFRNVAERDYQDGYRTIRGGQPVYIHPSSVLFRRKPEWVIY  636 (674)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCeEEccCCcEEEEechHHhhcCCCCEEEE
Confidence            67899999999999999999999999999999999999877                            24567999999


Q ss_pred             hhhhhccccccccceeechhhHHHhcccceeccCC
Q psy17351         53 HELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKET   87 (162)
Q Consensus        53 ~ELv~TsK~YmR~VT~Idp~WL~e~aP~~f~~~~~   87 (162)
                      |||++|+|.|||+||.|+++||.++||+||+....
T Consensus       637 ~el~~Ttk~Y~r~Vt~i~~~wL~e~ap~~~~~~~~  671 (674)
T KOG0922|consen  637 HELLQTTKEYMRNVTAIDPEWLLELAPHFFKQSDE  671 (674)
T ss_pred             EEEeecchHhHhheeecCHHHHHHhCchHhhcccc
Confidence            99999999999999999999999999999876553

>KOG0925|consensus

Probab=99.82  E-value=2.1e-20  Score=168.69  Aligned_cols=90  Identities=29%  Similarity=0.595  Sum_probs=81.7

Q ss_pred             CccHHHHHHHHHHHHHHcCCccccc----CcchhhhHHHHHhhhh---------------------------cCCCCCCE
Q psy17351          1 MRKVREVRTQLKEILIQQKMKLVSC----GTDWDVIRKCICSALF---------------------------GMGFTPDY   49 (162)
Q Consensus         1 L~~A~~IR~QL~~i~~r~~l~~~s~----~~d~d~IrKcL~s~lf---------------------------~~~~~P~~   49 (162)
                      |..|.+||.||.+||+++++++.+.    .+++.+|||||+||+|                           ++..+|+|
T Consensus       554 l~~Ad~vR~qL~rim~R~~L~~~st~F~S~~y~~nirKALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps~~l~~~PeW  633 (699)
T KOG0925|consen  554 LKSADNVRQQLLRIMDRFNLPLCSTDFGSRDYYVNIRKALVSGYFMQVAHLERGGHYLTVKDNQVVQLHPSTCLDHKPEW  633 (699)
T ss_pred             HHhHHHHHHHHHHHHHHhcCcccCCCCCChhHHHHHHHHHHHHHHHHHHhhccCCceEEEecCceEEeccccccCCCCCe
Confidence            5689999999999999999998764    3457899999999988                           24679999


Q ss_pred             EEehhhhhccccccccceeechhhHHHhcccceeccCCCCC
Q psy17351         50 VVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKS   90 (162)
Q Consensus        50 VVY~ELv~TsK~YmR~VT~Idp~WL~e~aP~~f~~~~~~~~   90 (162)
                      |+|||+|.|+++|+|.||.|.|+||.++||+||+..+++.+
T Consensus       634 VlyneFvlt~~N~ir~vt~I~pewlv~laP~YydlsNfp~~  674 (699)
T KOG0925|consen  634 VLYNEFVLTTKNFIRTVTDIRPEWLVELAPQYYDLSNFPPS  674 (699)
T ss_pred             EEEeeEEeeccceeeeecccCHHHHHHhchhhcccccCCch
Confidence            99999999999999999999999999999999999998876

>KOG0923|consensus

Probab=99.71  E-value=3.1e-18  Score=158.54  Aligned_cols=90  Identities=37%  Similarity=0.709  Sum_probs=82.6

Q ss_pred             CccHHHHHHHHHHHHHHcCCcccccCcchhhhHHHHHhhhh----------------------------cCCCCCCEEEe
Q psy17351          1 MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALF----------------------------GMGFTPDYVVY   52 (162)
Q Consensus         1 L~~A~~IR~QL~~i~~r~~l~~~s~~~d~d~IrKcL~s~lf----------------------------~~~~~P~~VVY   52 (162)
                      |.+|++||.||..++.+..+...||..+.+.||+||.+|+|                            +++..|+||||
T Consensus       773 m~rardir~qL~gll~~v~~~~~s~~~~~~~irk~i~aGff~h~a~l~~~g~y~tvk~~~tv~~hp~S~l~~~~P~wvvy  852 (902)
T KOG0923|consen  773 MKRARDIRDQLEGLLERVEIDLSSNQNDLDKIRKAITAGFFYHTAKLSKGGHYRTVKHPQTVSIHPNSGLFEQLPRWVVY  852 (902)
T ss_pred             HHHHHHHHHHHHHHhhhccccccCChHHHHHHHHHHhccccccceeccCCCcceeeccCcceeecCcccccccCCceEEE
Confidence            67899999999999999999999999999999999999776                            23567999999


Q ss_pred             hhhhhccccccccceeechhhHHHhcccceeccCCCCC
Q psy17351         53 HELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKS   90 (162)
Q Consensus        53 ~ELv~TsK~YmR~VT~Idp~WL~e~aP~~f~~~~~~~~   90 (162)
                      ||||+|+++|||.|+.|+++||.|+|||||+.++....
T Consensus       853 ~eLv~tske~mr~~~e~e~~Wlie~aphyyk~kdled~  890 (902)
T KOG0923|consen  853 HELVLTSKEFMRQVIEIEEEWLIEVAPHYYKLKDLEDA  890 (902)
T ss_pred             eehhcChHHHHHHHHhhhhhHHHHhchhhhhhhhcccc
Confidence            99999999999999999999999999999998876644

>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO)

Probab=99.69  E-value=3e-17  Score=120.45  Aligned_cols=73  Identities=37%  Similarity=0.688  Sum_probs=56.4

Q ss_pred             HHHHHHHHHcCCccccc-------------CcchhhhHHHHHhhhh----------------------------cCCCCC
Q psy17351          9 TQLKEILIQQKMKLVSC-------------GTDWDVIRKCICSALF----------------------------GMGFTP   47 (162)
Q Consensus         9 ~QL~~i~~r~~l~~~s~-------------~~d~d~IrKcL~s~lf----------------------------~~~~~P   47 (162)
                      +||.+||+++|+...+.             .++++.|++|||+|||                            ..+.+|
T Consensus         1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~~~~p   80 (114)
T PF07717_consen    1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLFKKPP   80 (114)
T ss_dssp             HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTTTTT-
T ss_pred             CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCcccccccc
Confidence            59999999998765443             1456889999999887                            246789


Q ss_pred             CEEEehhhhhccccccccceeechhhHHHhcccc
Q psy17351         48 DYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMF   81 (162)
Q Consensus        48 ~~VVY~ELv~TsK~YmR~VT~Idp~WL~e~aP~~   81 (162)
                      +||||+|++.|+|.||++||+|+|+||.++||+|
T Consensus        81 ~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~~~~  114 (114)
T PF07717_consen   81 KWVVYHELVRTSKPYMRDVTAISPEWLLLFAPHY  114 (114)
T ss_dssp             SEEEEEEEEESSSEEEEEEEE--HHHHHHH-TTT
T ss_pred             ccchhhhheecCCcEEEECcCCCHHHHHHHcccC
Confidence            9999999999999999999999999999999986

In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional

Probab=99.68  E-value=2.6e-17  Score=161.72  Aligned_cols=88  Identities=17%  Similarity=0.349  Sum_probs=79.6

Q ss_pred             CccHHHHHHHHHHHHHHcCCcccccCcchhhhHHHHHhhhh----------------------------cCCCCCCEEEe
Q psy17351          1 MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALF----------------------------GMGFTPDYVVY   52 (162)
Q Consensus         1 L~~A~~IR~QL~~i~~r~~l~~~s~~~d~d~IrKcL~s~lf----------------------------~~~~~P~~VVY   52 (162)
                      |+.|.+|+.||..+|+++|++..++.++++.|++|||+|||                            +++.+|+||||
T Consensus       587 l~e~~~i~~QL~~~~~~~g~~~~~~~~~~~~i~~all~G~~~nva~~~~~~~~y~~~~~~~~~ihP~S~L~~~~p~wvv~  666 (1294)
T PRK11131        587 VREWQDIYTQLRQVVKELGIPVNSEPAEYREIHTALLTGLLSHIGMKDAEKQEYTGARNARFSIFPGSGLFKKPPKWVMV  666 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHHhhcHHHHeeccCCCCeEEccCCcEEEEcCCccccCCCCCEEEE
Confidence            57899999999999999999999988899999999999877                            13467999999


Q ss_pred             hhhhhccccccccceeechhhHHHhcccceeccCCC
Q psy17351         53 HELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETG   88 (162)
Q Consensus        53 ~ELv~TsK~YmR~VT~Idp~WL~e~aP~~f~~~~~~   88 (162)
                      +|+|.|++.|||+||.|+|+||.+++|+||+...++
T Consensus       667 ~Elv~Tsr~y~r~va~I~p~Wl~~~a~~l~~~~y~e  702 (1294)
T PRK11131        667 AELVETSRLWGRIAARIEPEWIEPLAQHLIKRSYSE  702 (1294)
T ss_pred             EeeeccChhhhhhhcccCHHHHHHHHHHhccccCCC
Confidence            999999999999999999999999999998666543

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA

Probab=99.36  E-value=6.8e-13  Score=131.08  Aligned_cols=85  Identities=25%  Similarity=0.436  Sum_probs=75.6

Q ss_pred             CccHHHHHHHHHHHHHHcCCcccccCcchhhhHHHHHhhhh---------------------------cCCCCCCEEEeh
Q psy17351          1 MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALF---------------------------GMGFTPDYVVYH   53 (162)
Q Consensus         1 L~~A~~IR~QL~~i~~r~~l~~~s~~~d~d~IrKcL~s~lf---------------------------~~~~~P~~VVY~   53 (162)
                      |+.+.+|+.||..++++++++..++.++++.|.+|||+|||                           +.+.+|+||||+
T Consensus       578 l~~~~~i~~QL~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~iA~~~~~~~y~~~~g~~~~ihP~S~L~~~~p~wvv~~  657 (1283)
T TIGR01967       578 VREWQDIYRQLTQVVKELGLKLNEEPADYDAIHKALLSGLLSQIGMKDEKHEYDGARGRKFHIFPGSPLFKKPPKWVMAA  657 (1283)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCCCCccHHHHHHHHHHhhHHHHheeCCCCcEEecCCcEEEECCCccccCCCCCEEEEe
Confidence            45788999999999999999888777788889999999776                           124569999999


Q ss_pred             hhhhccccccccceeechhhHHHhcccceecc
Q psy17351         54 ELIMTSKEYMQCVTAVDGQWLAELGPMFFSVK   85 (162)
Q Consensus        54 ELv~TsK~YmR~VT~Idp~WL~e~aP~~f~~~   85 (162)
                      |++.|++.||++|++|+|+||.+++|++|...
T Consensus       658 elv~t~~~~ir~~a~I~p~wl~~~~~~~~~~~  689 (1283)
T TIGR01967       658 ELVETSKLYARLVAKIEPEWVEPVAGHLIKKN  689 (1283)
T ss_pred             eecccchheEeeeccCCHHHHHHHhHHHhEec
Confidence            99999999999999999999999999998766

This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.

>KOG0926|consensus

Probab=98.42  E-value=2.1e-07  Score=88.99  Aligned_cols=82  Identities=30%  Similarity=0.553  Sum_probs=60.9

Q ss_pred             CccHHHHHHHHHHHHHHcCCcc-------ccc-Ccc--hhhhHHHHHhhhh----------------------------c
Q psy17351          1 MRKVREVRTQLKEILIQQKMKL-------VSC-GTD--WDVIRKCICSALF----------------------------G   42 (162)
Q Consensus         1 L~~A~~IR~QL~~i~~r~~l~~-------~s~-~~d--~d~IrKcL~s~lf----------------------------~   42 (162)
                      |..++++|.||..|....++..       ... .++  ...++..||+|+.                            .
T Consensus       902 m~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~Ag~~DrVArk~~~~~y~~~~i~~~~fl~~~svl  981 (1172)
T KOG0926|consen  902 MEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICAGFADRVARKVDATEYDAAKIQEPVFLHRWSVL  981 (1172)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHHHHHHHHHHhccccccchhhhcCceeeeehhhh
Confidence            4568899999999987554322       111 122  3357899999532                            2


Q ss_pred             CCCCCCEEEehhhhhcccccccc-ceeechhhHHHhcccce
Q psy17351         43 MGFTPDYVVYHELIMTSKEYMQC-VTAVDGQWLAELGPMFF   82 (162)
Q Consensus        43 ~~~~P~~VVY~ELv~TsK~YmR~-VT~Idp~WL~e~aP~~f   82 (162)
                      .+..|+||+|.||+.|+..||.+ ||+|+|+||...++.|.
T Consensus       982 ~~~ape~viY~el~~~~~~~~~~~v~~v~pewl~~~~~slc 1022 (1172)
T KOG0926|consen  982 INSAPELVIYQELLLTNRPYMHGGVTAVRPEWLLNHAKSLC 1022 (1172)
T ss_pred             hccCccceehhhhhhcCCcccccceEEEchHHHHhhhhhhc
Confidence            46789999999999999888765 99999999999888543

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]

Probab=96.45  E-value=0.0011  Score=64.41  Aligned_cols=86  Identities=16%  Similarity=0.185  Sum_probs=65.0

Q ss_pred             CccHHHHHHHHHHHHHH-cCCcccccCc------------------chhhhHHHHHhhhh--------------------
Q psy17351          1 MRKVREVRTQLKEILIQ-QKMKLVSCGT------------------DWDVIRKCICSALF--------------------   41 (162)
Q Consensus         1 L~~A~~IR~QL~~i~~r-~~l~~~s~~~------------------d~d~IrKcL~s~lf--------------------   41 (162)
                      |.++..|+.|+...+.+ .+..+.++..                  .||.+++|++++++                    
T Consensus       569 L~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~  648 (845)
T COG1643         569 LSRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQLQLDGRPYVTLSDNT  648 (845)
T ss_pred             HHhhHHHHHHHHHhhhccccchhhhcccCcchhhhhhhhhhhccchhHHHHhhhhhhheecceeeeeccccccccCCCCc
Confidence            45677888898888877 5544433332                  26889999999433                    


Q ss_pred             ----------cCCCCCCEEEehhhhhccccccc-----------cceeechhhHHHhcc---cceeccC
Q psy17351         42 ----------GMGFTPDYVVYHELIMTSKEYMQ-----------CVTAVDGQWLAELGP---MFFSVKE   86 (162)
Q Consensus        42 ----------~~~~~P~~VVY~ELv~TsK~YmR-----------~VT~Idp~WL~e~aP---~~f~~~~   86 (162)
                                .....++|++|++++.|++.|++           +|+++.+.||.+.++   +|++...
T Consensus       649 ~v~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~wL~~~~~~~~~~~~~~~  717 (845)
T COG1643         649 PVFAHPSSVRLGLVLLEWIKYAEFLRTRKGYLREGRGERWPDVQTLIELLKLWLKEQVKGLRGLDGLTK  717 (845)
T ss_pred             eeEecchhHhhcccCcchHHHHHHHHHHHHHHhhcccccCcccchHhhhHHHhhhhhccccchhhhhhh
Confidence                      22457899999999999999999           699999999999988   5554443

>KOG0920|consensus

Probab=94.30  E-value=0.06  Score=52.97  Aligned_cols=86  Identities=20%  Similarity=0.404  Sum_probs=64.8

Q ss_pred             CccHHHHHHHHHHHHHHcCCcccc------------cCcchhhhHHHHHhhhhc--------------------------
Q psy17351          1 MRKVREVRTQLKEILIQQKMKLVS------------CGTDWDVIRKCICSALFG--------------------------   42 (162)
Q Consensus         1 L~~A~~IR~QL~~i~~r~~l~~~s------------~~~d~d~IrKcL~s~lf~--------------------------   42 (162)
                      |+...+.+.|+...+...++--.+            ...+++.|+.+||++||-                          
T Consensus       718 l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~~~~~~~~~~~~~~~~~~v~  797 (924)
T KOG0920|consen  718 LQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNIAFVRRMEPKSKSVTFVTKADGRVI  797 (924)
T ss_pred             HHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCceeeeecccCCcCcceeecCCceeEE
Confidence            456678899999999988743221            134678899999997760                          


Q ss_pred             ----------CCCCCCEEEehhhhhccc-cccccceeechhhHHHhcccceeccC
Q psy17351         43 ----------MGFTPDYVVYHELIMTSK-EYMQCVTAVDGQWLAELGPMFFSVKE   86 (162)
Q Consensus        43 ----------~~~~P~~VVY~ELv~TsK-~YmR~VT~Idp~WL~e~aP~~f~~~~   86 (162)
                                .+....|++|+|-+.|++ .|+|++|.|.+.=+.-++...+.+..
T Consensus       798 i~~~sv~~~~~~~~~p~l~~~~k~~t~~~~~~rd~T~v~~~~~llfgg~~~~~~~  852 (924)
T KOG0920|consen  798 IHPSSVNEQSTGFQSPFLVFPEKVKSTRLVSLRDTTSVSSSALLLFGGGISTVRM  852 (924)
T ss_pred             EecchhhccccccCCcceEEeeecccCCcceeeecCCCCcHHheeecCCceeecC
Confidence                      122223999999999999 99999999999988888886664433

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional

Probab=82.35  E-value=0.72  Score=44.95  Aligned_cols=39  Identities=13%  Similarity=0.125  Sum_probs=32.1

Q ss_pred             CCEEEehhhhhcc-ccc--cccceeechhhHHHhcccceecc
Q psy17351         47 PDYVVYHELIMTS-KEY--MQCVTAVDGQWLAELGPMFFSVK   85 (162)
Q Consensus        47 P~~VVY~ELv~Ts-K~Y--mR~VT~Idp~WL~e~aP~~f~~~   85 (162)
                      .+|+|++|++.++ +.+  |+.+++|+++||.+++|++|...
T Consensus       532 ~~~lv~a~~~~~~~~~~~ri~~a~~l~~~~l~~~~~~~~~~~  573 (812)
T PRK11664        532 HEWLIAPLLLQGSASPDARILLALPLDIDELVQRCPQLVQQS  573 (812)
T ss_pred             CCeEEEEEhhccCccccceeeEeeccCHHHHHHHHHHhceee
Confidence            5799999998774 444  66899999999999999876544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	162
3i4u_A	270	Crystal Structure Analysis Of A Helicase Associated		1e-13
3kx2_B	767	Crystal Structure Of Prp43p In Complex With Adp Len		8e-06
2xau_A	773	Crystal Structure Of The Prp43p Deah-Box Rna Helica		8e-06

>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain Length = 270

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 28/120 (23%)
Query: 1   MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALFG------------------ 42
           +R+ +++R Q+  I+ + K+ +VSCG     ++K ICS  F                   
Sbjct: 138 LRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQ 197
Query: 43  ----------MGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGS 92
                         P++VVYHEL++T+KEYM+ VT +D +WL E  P FF V E    G 
Sbjct: 198 VVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVLEVDLQGD 257

>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 43  MGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGSTKRRKALEHL 102
           +G   ++V+Y+E ++TSK Y++ VT+V  +WL E+ P ++ +    K G  K   +LE +
Sbjct: 687 LGHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSNFQK-GDVKL--SLERI 743
Query: 103 HEMEDQMKQ 111
            E  D++ +
Sbjct: 744 KEKVDRLNE 752

>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 43  MGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGSTKRRKALEHL 102
           +G   ++V+Y+E ++TSK Y++ VT+V  +WL E+ P ++ +    K G  K   +LE +
Sbjct: 687 LGHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSNFQK-GDVKL--SLERI 743
Query: 103 HEMEDQMKQ 111
            E  D++ +
Sbjct: 744 KEKVDRLNE 752
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
3i4u_A	270	ATP-dependent RNA helicase DHX8; splicing, ATP-bin	6e-42
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	1e-37

>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Length = 270

 Score =  140 bits (354), Expect = 6e-42
 Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 28/132 (21%)

Query: 1   MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALFG------------------ 42
           +R+ +++R Q+  I+ + K+ +VSCG     ++K ICS  F                   
Sbjct: 138 LRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQ 197

Query: 43  ----------MGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGS 92
                         P++VVYHEL++T+KEYM+ VT +D +WL E  P FF V E    G 
Sbjct: 198 VVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVLEVDLQGD 257

Query: 93  TKRRKALEHLHE 104
                      E
Sbjct: 258 HGLSAWSHPQFE 269

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773

 Score =  135 bits (342), Expect = 1e-37
 Identities = 28/159 (17%), Positives = 71/159 (44%), Gaps = 32/159 (20%)

Query: 1   MRKVREVRTQLKEILIQQKMKLVSCGTD----WDVIRKCICSALF--------------- 41
           +     +R+QL+ ++ +  ++L +   +    +D IRK + S  F               
Sbjct: 613 LSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYIT 672

Query: 42  -------------GMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETG 88
                         +G   ++V+Y+E ++TSK Y++ VT+V  +WL E+ P ++ +    
Sbjct: 673 VKDNQDVLIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSNFQ 732

Query: 89  KSGSTKRRKALEHLHEMEDQMKQAQDEIQARKEEEERRQ 127
           K       + ++   +  +++KQ +++ +++  ++    
Sbjct: 733 KGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHH 771

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
3i4u_A	270	ATP-dependent RNA helicase DHX8; splicing, ATP-bin	99.85
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	99.59

>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}

Probab=99.85  E-value=7.4e-22  Score=165.14  Aligned_cols=89  Identities=42%  Similarity=0.813  Sum_probs=79.3

Q ss_pred             CccHHHHHHHHHHHHHHcCCcccccCcchhhhHHHHHhhhh----------------------------cCCCCCCEEEe
Q psy17351          1 MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALF----------------------------GMGFTPDYVVY   52 (162)
Q Consensus         1 L~~A~~IR~QL~~i~~r~~l~~~s~~~d~d~IrKcL~s~lf----------------------------~~~~~P~~VVY   52 (162)
                      |++|.+||.||.++|.+.++++.+|+.+++.|++|||+|||                            +++.+|+||||
T Consensus       138 l~~~~~ir~QL~~~l~~~~~~~~s~~~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~~~p~wvvy  217 (270)
T 3i4u_A          138 LRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVY  217 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCCTTCTHHHHHHHHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTTSCCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCCCcchHHHHHHHHHHHhHHHHheeCCCCceEEccCCCEEEECchhhhcCCCCCEEEE
Confidence            56899999999999999999999999999999999999887                            13567999999


Q ss_pred             hhhhhccccccccceeechhhHHHhcccceeccCCCC
Q psy17351         53 HELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGK   89 (162)
Q Consensus        53 ~ELv~TsK~YmR~VT~Idp~WL~e~aP~~f~~~~~~~   89 (162)
                      +|+|.|+|.|||+||+|+|+||.+++|+||+.++...
T Consensus       218 ~Elv~Tsk~y~r~vt~I~p~wL~~~ap~~~~~~~~~~  254 (270)
T 3i4u_A          218 HELVLTTKEYMREVTTIDPRWLVEFAPAFFKVLEVDL  254 (270)
T ss_dssp             EEEEESSSEEEEEEEECCHHHHHHHCTTTEECC----
T ss_pred             EehhhhhHhHHHhccccCHHHHHHHhHHHhccccccc
Confidence            9999999999999999999999999999999887653

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=99.59  E-value=1.3e-15  Score=142.19  Aligned_cols=90  Identities=29%  Similarity=0.655  Sum_probs=78.0

Q ss_pred             CccHHHHHHHHHHHHHHcCCcccccC----cchhhhHHHHHhhhhc----------------------------CCCCCC
Q psy17351          1 MRKVREVRTQLKEILIQQKMKLVSCG----TDWDVIRKCICSALFG----------------------------MGFTPD   48 (162)
Q Consensus         1 L~~A~~IR~QL~~i~~r~~l~~~s~~----~d~d~IrKcL~s~lf~----------------------------~~~~P~   48 (162)
                      |+.|.+||.||.++|.+++++..++.    ++++.|++|||+|||.                            +...|+
T Consensus       613 l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~~~~~  692 (773)
T 2xau_A          613 LSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHDAE  692 (773)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCCCTTSTTHHHHHHHHHHHHHTTSEEEECCC--CEEETTTCCEEEECTTCCCCTTCS
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcCCCCCCchhhHHHHHHHHHHhChHhheeeccCCCcceEeeCCCEEEECCCcccCCCCC
Confidence            45799999999999999999887654    3568899999998771                            233699


Q ss_pred             EEEehhhhhccccccccceeechhhHHHhcccceeccCCCCC
Q psy17351         49 YVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKS   90 (162)
Q Consensus        49 ~VVY~ELv~TsK~YmR~VT~Idp~WL~e~aP~~f~~~~~~~~   90 (162)
                      ||||+|++.|++.|||+||+|+|+||.+++|+||...+.+.+
T Consensus       693 ~~v~~e~~~t~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~  734 (773)
T 2xau_A          693 WVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSNFQKG  734 (773)
T ss_dssp             EEEEEEEEESSSEEEEEEEECCHHHHHHHCTTTSCGGGCCSS
T ss_pred             EEEEEEeeccchhheeecccCCHHHHHHHHHHheeeccCCch
Confidence            999999999999999999999999999999999988887644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00