Psyllid ID: psy17363

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790

MEDTEEYYNEILNYPKSVQDALKEIMPSTDVLDDHDFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIPQILELRSQVAQIQNTLSEQITQDLKNAFQNPSSGSFVPSKQIAEALRVVSILDPKVKKNILEWFISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLLEKRFADDETEGENKTKFDGIIGSCFQNYLYIYIESLDRNLSDLIDRFAEDSKQVLNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQLSTGEPMVALATTFQQYLRHYAHKVLQQNVSKQAGQTANTTLASVSNITRDLGLIKDQRTKYTPQEQAKICCVLTTAEYCLETTQQLEQKLKEKVDPNLANKIDLSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVKTNWSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQLLLDIHMLKTVLLDLPSIGSQVVRKAPASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCKLLPESDMTEFQRILDMKGLKTNEKNNLINLFRPKNPSNTSSSLVAATNSTSSSRQDTSSIQKLNNLIKKNLM

cccHHHHHHHcccccHHHHHHHHHHcccccccccccccHHHHHHHHccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHcHHHHHHccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHcccccccccccHHcccccccccccccHHHHHHHHHHHHHcc

cccHHHHHccEEcccHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccHHcccccccccccccHHHHHHHHHHHHcc

MEDTEEYYNEILNYPKSVQDALKEimpstdvlddhdfdsvQYINslfpteqslsniDDVIMKMESNIKEMDEEIETVVrsqsgvgqdgKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKhfqdstdipqILELRSQVAQIQNTLSEQITQDLKnafqnpssgsfvpskQIAEALRVVSILDPKVKKNILEWFISLQLSEYLVLfdesedsawLDKIDKRYAWFKKQLLHVEdkfgtlfpphwqlsekITLEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLLEKRFaddetegenktkfdgiiGSCFQNYLYIYIESLDRNLSDLIDRFAEDSKQVLNNINEtcetsaapvlpscADLFMFYKKSlvqctqlstgePMVALATTFQQYLRHYAHKVLQQnvskqagqtaNTTLASVSNITRdlglikdqrtkytpqeqAKICCVLTTAEYCLETTQQLEQKLKekvdpnlankidlsneqdVFHNVISSCIQLLVQDLELACEPALTAMVKTNWssvesvgdqsgYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFANSFIPKLVQHVfkckplstvgaEQLLLDIHMLKTVLLdlpsigsqvvrkapaSFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFckllpesdmTEFQRILDMKGlktneknnlinlfrpknpsntssslvaatnstsssrqdtSSIQKLNNLIKKNLM

MEDTEEYYNEILNYPKSVQDALKEIMPSTDVLDDHDFDSVQYINSLfpteqslsniDDVIMKMESNIKEMDEEIETVvrsqsgvgqdgKKALEDSQKVIMQLFSQvrdikskaekseemVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIPQILELRSQVAQIQNTLSEQITQDLKNAFQNPSSGSFVPSKQIAEALRVVSILDPKVKKNILEWFISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSELgkimskrkFEIDVKLLLYAIQKTSNFEQLLEKRfaddetegenktkfdgiigsCFQNYLYIYIESLDRNLSDLIDRFAEDSKQVLNNINETcetsaapvLPSCADLFMFYKKSLVQCTQLSTGEPMVALATTFQQYLRHYAHKVLQQNVSKQAGQTANTTLASVSNITRDLGLikdqrtkytpqeqAKICCVLTTAEYCLETTQQLEQKLKEKVDPNLANKIDLSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVKTNWSSVESVGDQSGYVTAItshlkqsvplIRTNLSSSRKYFTQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQLLLDIHMLKTVLLDLPSigsqvvrkapasfTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCKLLPESDMTEFQRILDMKGLKTNEKNNLINlfrpknpsntsSSLVAAtnstsssrqdtssiqklnnlikknlm

******YYNEILNYPKSVQDALKEIMPSTDVLDDHDFDSVQYINSLFPTEQSLSNIDDVI*************************************************************EITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIPQILELRSQVAQIQN**************************QIAEALRVVSILDPKVKKNILEWFISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLLEKRF*********KTKFDGIIGSCFQNYLYIYIESLDRNLSDLIDRFAEDSKQVLNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQLSTGEPMVALATTFQQYLRHYAHKVLQQNVS*****TANTTLASVSNITRDLGLIKDQRTKYTPQEQAKICCVLTTAEYCLETTQQLE*********NLANKIDLSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVKTNWSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQLLLDIHMLKTVLLDLPSIGSQVVRKAPASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCKLLPESDMTEFQRILDMKGLK******LIN*******************************************

*********EILNYPKSVQDALKEIMPSTDVLDDHDFDSVQYINSLFPTEQSLSNIDDVIMKMESN********************************IMQLFSQVR******************DIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLR*********EIVMPLQGVIEVMKHFQDSTDIPQILELRSQVAQIQNTLSEQITQDLKNA***************AEALRVVSILDPKVKKNILEWFISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLLE*******************IGSCFQNYLYIYIESLDRNLSD**************************VLPSCADLFMFYKKSLVQCTQLSTGEPMVALATTFQQYLRHYAHKVLQQN*********************************TPQEQAKICCVLTTAEYCLETTQQLEQKLKEKV*******IDLSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVKTNWSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQLLLDIHMLKTVLL*****************TKVVVKGMTKAEMILKLVMASAEPDICFVEQFCKLLPESDMTEFQRILDMKGLKTNEKNNLINLF**********************************LIKKNLM

MEDTEEYYNEILNYPKSVQDALKEIMPSTDVLDDHDFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETV**************LEDSQKVIMQLFSQVRD************REITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIPQILELRSQVAQIQNTLSEQITQDLKNAFQNPSSGSFVPSKQIAEALRVVSILDPKVKKNILEWFISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLLEKRFADDETEGENKTKFDGIIGSCFQNYLYIYIESLDRNLSDLIDRFAEDSKQVLNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQLSTGEPMVALATTFQQYLRHYAHKVLQQNVSKQAGQTANTTLASVSNITRDLGLIKDQRTKYTPQEQAKICCVLTTAEYCLETTQQLEQKLKEKVDPNLANKIDLSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVKTNWSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQLLLDIHMLKTVLLDLPSIGSQVVRKAPASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCKLLPESDMTEFQRILDMKGLKTNEKNNLINLFRPKNPS**********************IQKLNNLIKKNLM

*EDTEEYYNEILNYPKSVQDALKEIMPSTDVLDDHDFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIPQILELRSQVAQIQNTLSEQITQDLKNAFQNPSSGSFVPSKQIAEALRVVSILDPKVKKNILEWFISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLLEKRFADDETEGENKTKFDGIIGSCFQNYLYIYIESLDRNLSDLIDRFAEDSK***************PVLPSCADLFMFYKKSLVQCTQLSTGEPMVALATTFQQYLRHYAHKVLQQNVS***************************RTKYTPQEQAKICCVLTTAEYCLETTQQLEQKLKEKVDPNLANKIDLSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVKTNWSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQLLLDIHMLKTVLLDLPSIGS*VVRKAPASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCKLLPESDMTEFQRILDMKGLKTNEKNNLINLFRPK*************************IQKL*******LM

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MEDTEEYYNEILNYPKSVQDALKEIMPSTDVLDDHDFDSVQYINSLFPTEQSxxxxxxxxxxxxxxxxxxxxxxxxxxxxQSGVGQDGKKALEDSQKVIMQLFSQxxxxxxxxxxxxxxxxxxxxxIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIPQILELRSQVAQIQNTLSEQITQDLKNAFQNPSSGSFVPSKQIAEALRVVSILDPKVKKNILEWFISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLLEKRFADDETEGENKTKFDGIIGSCFQNYLYIYIESLDRNLSDLIDRFAEDSKQVLNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQLSTGEPMVALATTFQQYLRHYAHKVLQQNVSKQAGQTANTTLASVSNITRDLGLIKDQRTKYTPQEQAKICCVLTTAEYCLETTQQLEQKLKEKVDPNLANKIDLSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVKTNWSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQLLLDIHMLKTVLLDLPSIGSQVVRKAPASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCKLLPESDMTEFQRILDMKGLKTNEKNNLINLFRPKNPSNTSSSLVAATNSTSSSRQDTSSIQKLNNLIKKNLM

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		790	2.2.26 [Sep-21-2011]
Q5ZLD7		831	Vacuolar protein sorting-	yes	N/A	0.963	0.915	0.529	0.0
Q8CCB4		832	Vacuolar protein sorting-	yes	N/A	0.963	0.914	0.532	0.0
Q5R5J4		699	Vacuolar protein sorting-	yes	N/A	0.8	0.904	0.521	0.0
Q5VIR6		699	Vacuolar protein sorting-	no	N/A	0.8	0.904	0.523	0.0
P34561		798	Vacuolar protein sorting-	yes	N/A	0.908	0.899	0.374	1e-146
P87129		756	Vacuolar protein sorting-	yes	N/A	0.840	0.878	0.241	1e-68
P47061		822	Vacuolar protein sorting-	yes	N/A	0.658	0.632	0.233	1e-29

>sp\|Q5ZLD7\|VPS53_CHICK Vacuolar protein sorting-associated protein 53 homolog OS=Gallus gallus GN=VPS53 PE=2 SV=1	Back alignment and function desciption

 Score =  857 bits (2214), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/833 (52%), Positives = 578/833 (69%), Gaps = 72/833 (8%)

Query: 12  LNYPKSVQDALKEIMPSTDVLDDHDFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMD 71
           L    +VQ A++++ PS D LD  DF++V+YIN+LFPTEQSL+NID+V+ K+   I+++D
Sbjct: 16  LELAPAVQAAIEQVFPSQDPLDRADFNAVEYINTLFPTEQSLANIDEVVNKIRLKIRKLD 75

Query: 72  EEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLD 131
           + I TVVR Q+ VGQDG++ALE++QK I QLF +++DIK KAEKSE+MV+EITRDIK LD
Sbjct: 76  DNIRTVVRGQTNVGQDGRQALEEAQKAIQQLFGKIKDIKDKAEKSEQMVKEITRDIKQLD 135

Query: 132 TAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIPQ 191
            AKR+LTT+IT LNHLHML  GV SL  +  +RQYGE+   LQGV+ V++HF     IPQ
Sbjct: 136 HAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRRQYGEVANLLQGVVNVLEHFNKYMGIPQ 195

Query: 192 ILELRSQVAQIQNTLSEQITQDLKNAFQNPSSGS---FVPSKQIAEALRVVSILDPKVKK 248
           I +L  +V   QN L +QI  D + AF  PS G+     PS  + +A  V ++LDP++K+
Sbjct: 196 IRQLSERVKAAQNELGQQILADFEEAF--PSQGTKRPGGPSNVLRDACLVANVLDPRIKQ 253

Query: 249 NILEWFISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSE 308
            I++ FI   LSEYLVLF E++D AWLDKID+RYAW K+QL+  E+K+G +FP  W ++E
Sbjct: 254 EIIKKFIKQHLSEYLVLFQENQDVAWLDKIDRRYAWIKRQLVDYEEKYGRMFPQEWCMTE 313

Query: 309 KITLEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLLEKRFA----------- 357
           +I +EFC  TR+EL KIM  R  EI+VKLLL+AIQ+T+NFE LL KRF+           
Sbjct: 314 RIAVEFCHVTRTELAKIMRTRAKEIEVKLLLFAIQRTTNFEGLLAKRFSGCTLADGTVKK 373

Query: 358 ------------DDETEGE-----------NKTK--------FDGIIGSCFQNYLYIYIE 386
                       +DET  E           +K K        F GI+  CF+ +LY+YIE
Sbjct: 374 PEAPPPSTNPFLEDETGTETDEIVIEKSDADKPKKPKVPDNPFHGIVSKCFEPHLYVYIE 433

Query: 387 SLDRNLSDLIDRFAEDSKQ---VLNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQLS 443
           S D+NLS+LIDRF  D K       N++E        VLPSCADLF++YKK +VQC+QLS
Sbjct: 434 SQDKNLSELIDRFVADFKAQGPPKPNVDE-----GGAVLPSCADLFVYYKKCMVQCSQLS 488

Query: 444 TGEPMVALATTFQQYLRHYAHKVLQQNVSKQAGQTANTTLASVSNITRDLGLIKDQR--- 500
           TGEPM+AL T FQ+YLR YA K+L  N+ K    +   T+ S         L+K++    
Sbjct: 489 TGEPMIALTTIFQKYLREYAWKILSGNLPKTTSSSGGLTITS---------LLKEKEGSE 539

Query: 501 -TKYTPQEQAKICCVLTTAEYCLETTQQLEQKLKEKVDPNLANKIDLSNEQDVFHNVISS 559
             K+T +E   IC +L+TAEYCL TTQQLE+KLKEKVD +L  +I+L+ E D F  VIS+
Sbjct: 540 VAKFTLEELCLICSILSTAEYCLATTQQLEEKLKEKVDASLVERINLTGETDTFSIVISN 599

Query: 560 CIQLLVQDLELACEPALTAMVKTNWSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSR 619
            IQLLVQDL+ AC+PALTAM K  W +VE VGDQS YVT++  H+KQ+VP+IR NL+S+R
Sbjct: 600 SIQLLVQDLDAACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTR 659

Query: 620 KYFTQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQLLLDIHMLKTVLLDLPSIGSQVVRK 679
           KYFTQFC+KFANSFIPK + H+FKCKP+S VGAEQLLLD H LK VLLDLPSIGSQVVRK
Sbjct: 660 KYFTQFCIKFANSFIPKFINHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRK 719

Query: 680 APASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCKLLPESDMTEFQRILDMKGLKT 739
           APAS+T++VVKGMT+AEMILK+VMA  EP + FV+ + KLL +     FQ+ILDMKGLK 
Sbjct: 720 APASYTRIVVKGMTRAEMILKVVMAPHEPPVVFVDNYIKLLADCSTDTFQKILDMKGLKR 779

Query: 740 NEKNNLINLFR---PKNPSNTSSSLVAATNSTSSSRQDTSSIQKLNNLIKKNL 789
           +E+++++ LFR   P  PS   +S  + + S  +  Q++S I+KL  LIKK L
Sbjct: 780 SEQSSMLELFRQRLPAPPSGVENS-GSLSLSAPTPEQESSRIRKLEKLIKKRL 831

May be involved in retrograde transport of early and late endosomes to the late Golgi.
Gallus gallus (taxid: 9031)

>sp\|Q8CCB4\|VPS53_MOUSE Vacuolar protein sorting-associated protein 53 homolog OS=Mus musculus GN=Vps53 PE=2 SV=1	Back alignment and function description

>sp\|Q5R5J4\|VPS53_PONAB Vacuolar protein sorting-associated protein 53 homolog OS=Pongo abelii GN=VPS53 PE=2 SV=1	Back alignment and function description

>sp\|Q5VIR6\|VPS53_HUMAN Vacuolar protein sorting-associated protein 53 homolog OS=Homo sapiens GN=VPS53 PE=1 SV=1	Back alignment and function description

>sp\|P34561\|VPS53_CAEEL Vacuolar protein sorting-associated protein 53 homolog OS=Caenorhabditis elegans GN=vps-53 PE=3 SV=3	Back alignment and function description

>sp\|P87129\|VPS53_SCHPO Vacuolar protein sorting-associated protein 53 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps53 PE=1 SV=1	Back alignment and function description

>sp\|P47061\|VPS53_YEAST Vacuolar protein sorting-associated protein 53 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS53 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		790
405964856		841	Vacuolar protein sorting-associated prot	0.975	0.916	0.545	0.0
91085247		771	PREDICTED: similar to CG3338 CG3338-PA [	0.926	0.949	0.582	0.0
390332391		833	PREDICTED: vacuolar protein sorting-asso	0.991	0.939	0.531	0.0
328708099		849	PREDICTED: vacuolar protein sorting-asso	0.965	0.898	0.547	0.0
260830635		824	hypothetical protein BRAFLDRAFT_92989 [B	0.974	0.934	0.539	0.0
307203538		833	Vacuolar protein sorting-associated prot	0.984	0.933	0.545	0.0
383852517		837	PREDICTED: vacuolar protein sorting-asso	0.987	0.931	0.545	0.0
380016843		834	PREDICTED: vacuolar protein sorting-asso	0.987	0.935	0.547	0.0
345497502		848	PREDICTED: vacuolar protein sorting-asso	0.969	0.903	0.542	0.0
66547591		834	PREDICTED: vacuolar protein sorting-asso	0.988	0.936	0.546	0.0

>gi\|405964856\|gb\|EKC30298.1\| Vacuolar protein sorting-associated protein 53-like protein [Crassostrea gigas]	Back alignment and taxonomy information

 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/828 (54%), Positives = 604/828 (72%), Gaps = 57/828 (6%)

Query: 13  NYPKSVQDALKEIMPSTDVLDDHDFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDE 72
           N+P  +Q+ +++I+PS D LD  DF+ + YIN+LFPTEQSL NIDDV+ KM   I+++D+
Sbjct: 20  NFPPDIQEVIEQILPSDDPLDRADFNPIDYINTLFPTEQSLVNIDDVVGKMRMKIRKLDD 79

Query: 73  EIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDT 132
           EI +VVR Q+  G+DG+ ALE++Q+ I +LFS++++IK KA+KSEEMV+EITRDIK LD 
Sbjct: 80  EIRSVVRGQTNAGEDGRLALEEAQRAIQELFSKIKEIKDKADKSEEMVKEITRDIKQLDH 139

Query: 133 AKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIPQI 192
           AK+NLT++IT LNHLHMLV GV SL  L ++RQYGE+   LQGV  V++HFQ   +IPQI
Sbjct: 140 AKKNLTSSITTLNHLHMLVGGVDSLSNLSKRRQYGEVANLLQGVQNVLEHFQKYMEIPQI 199

Query: 193 LELRSQVAQIQNTLSEQITQDLKNAFQNPSSGSFVPS--KQIAEALRVVSILDPKVKKNI 250
            EL  +V  IQ+ L  QI  D + AFQ  +   + PS  +Q+ EA  VV +LD KVKK++
Sbjct: 200 KELADRVKSIQSDLGSQILADFEEAFQG-AGAKYGPSNQRQLKEACLVVDVLDSKVKKDL 258

Query: 251 LEWFISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKI 310
           L WF+ LQLSEYLVLF E E+ AWLDKID+RYAW K+ L+  E+KFG LFP  W++SE+I
Sbjct: 259 LAWFVKLQLSEYLVLFGEKEEVAWLDKIDRRYAWIKRTLVDFEEKFGPLFPEAWEVSERI 318

Query: 311 TLEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLLEKRF-------------A 357
            +EFC  TRSEL +IM +R  EIDVKLLL+AIQ+T+NFE L+ KRF             A
Sbjct: 319 CIEFCNLTRSELSRIMGRRTHEIDVKLLLFAIQRTTNFEALIAKRFTGVTLNEAQSGKVA 378

Query: 358 DDETEGEN------------------------------KTKFDGIIGSCFQNYLYIYIES 387
           + +T+  N                               + F GII  CF+ +L IYI+S
Sbjct: 379 NPQTQSSNPFVESTNPFETESEEEMTSSEESKEPLKQAGSPFTGIISKCFEQHLNIYIDS 438

Query: 388 LDRNLSDLIDRFAEDSKQVLNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQLSTGEP 447
            D+NL++LI+RF ED +Q      ET E+S   VLPSCADLF+FYKK +VQC+QLSTG+P
Sbjct: 439 QDKNLAELINRFLEDLRQQGTPRMETEESSN--VLPSCADLFVFYKKCMVQCSQLSTGKP 496

Query: 448 MVALATTFQQYLRHYAHKVLQQNVSKQAGQTANTTLASVSNITRDLGLIKDQRTKYTPQE 507
           M+ L  TFQ+YLR YA++VL  N+ K + Q+    ++S S + + + L + + TK+T +E
Sbjct: 497 MIDLTRTFQKYLREYANRVLLNNLPKASNQSGG--ISSASGLIQSI-LKEGEVTKFTEEE 553

Query: 508 QAKICCVLTTAEYCLETTQQLEQKLKEKVDPNLANKIDLSNEQDVFHNVISSCIQLLVQD 567
           Q +IC +L TAEYC+ET+QQLE+KLKEKV+P+L+N+ID+++EQD FHNVIS+CIQLLVQD
Sbjct: 554 QCRICSILCTAEYCMETSQQLEEKLKEKVNPSLSNQIDMNSEQDTFHNVISNCIQLLVQD 613

Query: 568 LELACEPALTAMVKTNWSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCV 627
           LE ACEPALTAM K +WSSVESVGDQSGY++A+T HLKQ++P+IR NL+SSRK+FTQFC+
Sbjct: 614 LETACEPALTAMSKMSWSSVESVGDQSGYISALTGHLKQNLPVIRDNLASSRKFFTQFCL 673

Query: 628 KFANSFIPKLVQHVFKCKPLSTVGAEQLLLDIHMLKTVLLDLPSIGSQVVRKAPASFTKV 687
           KFANSFIPK + H+FKCK +STV AEQLLLD H LKT+LLDLPS+GSQVVRKAP S+TK+
Sbjct: 674 KFANSFIPKFISHLFKCKNISTVAAEQLLLDTHSLKTILLDLPSLGSQVVRKAPTSYTKI 733

Query: 688 VVKGMTKAEMILKLVMASAEPDICFVEQFCKLLPESDMTEFQRILDMKGLKTNEKNNLIN 747
           VVKGMT+AE ILK+VM+       FVE + ++L +SD+ EFQ++L+MKGL+ +E++N++ 
Sbjct: 734 VVKGMTRAEHILKVVMSPHTDQHRFVESYYRMLSDSDLNEFQKVLEMKGLRRSEQSNILE 793

Query: 748 LFRPKNP-SNTSSSLVAATN-----STSSSRQDTSSIQKLNNLIKKNL 789
           ++R K P S  + S  + TN      T +S Q++S I+KL  LIKK L
Sbjct: 794 IYRAKMPVSAAAGSTHSDTNQNSALQTQTSEQESSRIRKLERLIKKRL 841

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi\|91085247\|ref\|XP_973234.1\| PREDICTED: similar to CG3338 CG3338-PA [Tribolium castaneum] gi\|270008454\|gb\|EFA04902.1\| hypothetical protein TcasGA2_TC014966 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|390332391\|ref\|XP_796587.3\| PREDICTED: vacuolar protein sorting-associated protein 53 homolog [Strongylocentrotus purpuratus]	Back alignment and taxonomy information

>gi\|328708099\|ref\|XP_001944870.2\| PREDICTED: vacuolar protein sorting-associated protein 53 homolog [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|260830635\|ref\|XP_002610266.1\| hypothetical protein BRAFLDRAFT_92989 [Branchiostoma floridae] gi\|229295630\|gb\|EEN66276.1\| hypothetical protein BRAFLDRAFT_92989 [Branchiostoma floridae]	Back alignment and taxonomy information

>gi\|307203538\|gb\|EFN82571.1\| Vacuolar protein sorting-associated protein 53-like protein [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|383852517\|ref\|XP_003701773.1\| PREDICTED: vacuolar protein sorting-associated protein 53 homolog [Megachile rotundata]	Back alignment and taxonomy information

>gi\|380016843\|ref\|XP_003692381.1\| PREDICTED: vacuolar protein sorting-associated protein 53 homolog [Apis florea]	Back alignment and taxonomy information

>gi\|345497502\|ref\|XP_001600124.2\| PREDICTED: vacuolar protein sorting-associated protein 53 homolog [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|66547591\|ref\|XP_623283.1\| PREDICTED: vacuolar protein sorting-associated protein 53 homolog [Apis mellifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		790
UNIPROTKB\|Q5ZLD7		831	VPS53 "Vacuolar protein sortin	0.553	0.525	0.545	1.5e-221
UNIPROTKB\|E1BJW7		832	VPS53 "Uncharacterized protein	0.522	0.496	0.570	2.5e-221
MGI\|MGI:1915549		832	Vps53 "vacuolar protein sortin	0.550	0.522	0.550	6.6e-221
UNIPROTKB\|F1RHI3		832	VPS53 "Uncharacterized protein	0.522	0.496	0.566	9.7e-220
UNIPROTKB\|E2R1D2		832	VPS53 "Uncharacterized protein	0.522	0.496	0.568	9.7e-220
ZFIN\|ZDB-GENE-041114-199		832	vps53 "vacuolar protein sortin	0.554	0.526	0.536	1.2e-219
UNIPROTKB\|Q5VIR6		699	VPS53 "Vacuolar protein sortin	0.449	0.507	0.535	2e-184
DICTYBASE\|DDB_G0285901		838	DDB_G0285901 "Vps53-like domai	0.454	0.428	0.367	7.3e-111
WB\|WBGene00011502		798	vps-53 [Caenorhabditis elegans	0.888	0.879	0.323	1.3e-98
UNIPROTKB\|P34561		798	vps-53 "Vacuolar protein sorti	0.888	0.879	0.323	1.3e-98

UNIPROTKB\|Q5ZLD7 VPS53 "Vacuolar protein sorting-associated protein 53 homolog" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

 Score = 1185 (422.2 bits), Expect = 1.5e-221, Sum P(2) = 1.5e-221
 Identities = 245/449 (54%), Positives = 312/449 (69%)

Query:   345 TSNFEQLLEKRFADDETEGE-NKTKFDGIIGSCFQNYLYIYIESLDRNLSDLIDRFAEDS 403
             T   E ++EK  AD   + +     F GI+  CF+ +LY+YIES D+NLS+LIDRF  D 
Sbjct:   391 TETDEIVIEKSDADKPKKPKVPDNPFHGIVSKCFEPHLYVYIESQDKNLSELIDRFVADF 450

Query:   404 KQVLNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQLSTGEPMVALATTFQQYLRHYA 463
             K          +   A VLPSCADLF++YKK +VQC+QLSTGEPM+AL T FQ+YLR YA
Sbjct:   451 K-AQGPPKPNVDEGGA-VLPSCADLFVYYKKCMVQCSQLSTGEPMIALTTIFQKYLREYA 508

Query:   464 HKVLQQNVSKQAGQTANTTLASVSNITRDLGLIKDQRTKYTPQEQAKICCVLTTAEYCLE 523
              K+L  N+ K    +   T+ S+  +    G    +  K+T +E   IC +L+TAEYCL 
Sbjct:   509 WKILSGNLPKTTSSSGGLTITSL--LKEKEG---SEVAKFTLEELCLICSILSTAEYCLA 563

Query:   524 TTQQLEQKLKEKVDPNLANKIDLSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVKTN 583
             TTQQLE+KLKEKVD +L  +I+L+ E D F  VIS+ IQLLVQDL+ AC+PALTAM K  
Sbjct:   564 TTQQLEEKLKEKVDASLVERINLTGETDTFSIVISNSIQLLVQDLDAACDPALTAMSKMQ 623

Query:   584 WSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFANSFIPKLVQHVFK 643
             W +VE VGDQS YVT++  H+KQ+VP+IR NL+S+RKYFTQFC+KFANSFIPK + H+FK
Sbjct:   624 WQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKFANSFIPKFINHLFK 683

Query:   644 CKPLSTVGAEQLLLDIHMLKTVLLDLPSIGSQVVRKAPASFTKVVVKGMTKAEMILKLVM 703
             CKP+S VGAEQLLLD H LK VLLDLPSIGSQVVRKAPAS+T++VVKGMT+AEMILK+VM
Sbjct:   684 CKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRKAPASYTRIVVKGMTRAEMILKVVM 743

Query:   704 ASAEPDICFVEQFCKLLPESDMTEFQRILDMKGLKTNEKNNLINLFR---PKNPSNTSSS 760
             A  EP + FV+ + KLL +     FQ+ILDMKGLK +E+++++ LFR   P  PS   +S
Sbjct:   744 APHEPPVVFVDNYIKLLADCSTDTFQKILDMKGLKRSEQSSMLELFRQRLPAPPSGVENS 803

Query:   761 LVAAXXXXXXXXXXXXXIQKLNNLIKKNL 789
               +              I+KL  LIKK L
Sbjct:   804 -GSLSLSAPTPEQESSRIRKLEKLIKKRL 831

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

UNIPROTKB\|E1BJW7 VPS53 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:1915549 Vps53 "vacuolar protein sorting 53 (yeast)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RHI3 VPS53 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R1D2 VPS53 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-041114-199 vps53 "vacuolar protein sorting 53 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5VIR6 VPS53 "Vacuolar protein sorting-associated protein 53 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0285901 DDB_G0285901 "Vps53-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

WB\|WBGene00011502 vps-53 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|P34561 vps-53 "Vacuolar protein sorting-associated protein 53 homolog" [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34561	VPS53_CAEEL	No assigned EC number	0.3748	0.9088	0.8997	yes	N/A
P87129	VPS53_SCHPO	No assigned EC number	0.2418	0.8405	0.8783	yes	N/A
Q5R5J4	VPS53_PONAB	No assigned EC number	0.5216	0.8	0.9041	yes	N/A
Q8CCB4	VPS53_MOUSE	No assigned EC number	0.5329	0.9632	0.9146	yes	N/A
Q5ZLD7	VPS53_CHICK	No assigned EC number	0.5294	0.9632	0.9157	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		790
pfam04100		375	pfam04100, Vps53_N, Vps53-like, N-terminal	1e-136

>gnl\|CDD\|217892 pfam04100, Vps53_N, Vps53-like, N-terminal	Back alignment and domain information

 Score =  408 bits (1051), Expect = e-136
 Identities = 175/372 (47%), Positives = 265/372 (71%), Gaps = 3/372 (0%)

Query: 36  DFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDS 95
           DF +++YIN LFPTEQSL+NID +I K++  I+ +D  I+TVVR Q+ VG+ GK+AL+++
Sbjct: 3   DFSALEYINQLFPTEQSLTNIDSLIQKIQEEIRRLDANIKTVVRGQANVGEKGKEALDEA 62

Query: 96  QKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVH 155
           QK I +LF ++++IKSKAE +EEMV+EITRDIK LD AK+NLTT+IT L+ LHMLVTGV 
Sbjct: 63  QKAIEELFQKIKEIKSKAESTEEMVKEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVE 122

Query: 156 SLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIPQILELRSQVAQIQNTLSEQITQDLK 215
           SL  LI++R YGE   PLQ +++++ HF     + +I  L   +++++ +L  QI QD K
Sbjct: 123 SLNALIQKRSYGEAASPLQAILQLLNHFIKYKSVDEIANLSESISKLKGSLLSQIFQDFK 182

Query: 216 NAFQNPSSGS-FVPSKQIAEALRVVSILDPKVKKNILEWFISLQLSEYLVLFDESEDSAW 274
           +AF +       +  +++++A  V   LDP V++ +++WF S QL EY  +F E+E++AW
Sbjct: 183 SAFGSQGEHRTGLLLQKLSDACLVADALDPSVREELIKWFCSQQLEEYEQIFRENEEAAW 242

Query: 275 LDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSELGKIMSKRKFEID 334
           LDKID+RYAWFK+ L   E+K+G +FP  W ++E++T+EFC  TR +L KI+ +R  E+D
Sbjct: 243 LDKIDRRYAWFKRLLRDFEEKYGPIFPADWHVAERLTVEFCHVTRKQLAKILVRRDKELD 302

Query: 335 VKLLLYAIQKTSNFEQLLEKRFADDETEGENKTK--FDGIIGSCFQNYLYIYIESLDRNL 392
           VKLLL+A+Q T  FE+ L+KRF++   +     +  F G I SCF+ +L +YIES ++ L
Sbjct: 303 VKLLLFALQSTLEFEKFLDKRFSNTSKKTPEPKELAFHGAISSCFEPHLTLYIESQEKEL 362

Query: 393 SDLIDRFAEDSK 404
           S+L+++F  + K
Sbjct: 363 SELLEKFVSEEK 374

Vps53 complexes with Vps52 and Vps54 to form a multi- subunit complex involved in regulating membrane trafficking events. Length = 375

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		790
KOG2180\|consensus		793		100.0
PF04100		383	Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007	100.0
PF06046		566	Sec6: Exocyst complex component Sec6; InterPro: IP	99.97
COG5173		742	SEC6 Exocyst complex subunit SEC6 [Intracellular t	99.95
KOG2286\|consensus		667		99.86
PF04437		494	RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR00	99.76
PF10191		766	COG7: Golgi complex component 7 (COG7); InterPro:	99.67
KOG2346\|consensus		636		99.49
KOG0412\|consensus		773		98.87
PF07393		710	Sec10: Exocyst complex component Sec10; InterPro:	98.86
KOG2218\|consensus		737		98.83
PF04091		311	Sec15: Exocyst complex subunit Sec15-like ; InterP	98.69
PF10475		291	DUF2450: Protein of unknown function N-terminal do	98.63
PF06248		593	Zw10: Centromere/kinetochore Zw10; InterPro: IPR00	98.43
KOG2176\|consensus		800		98.33
KOG2307\|consensus		705		98.02
PF10392		132	COG5: Golgi transport complex subunit 5; InterPro:	97.57
KOG4182\|consensus		828		97.56
PF04124		338	Dor1: Dor1-like family ; InterPro: IPR007255 Dor1	97.48
PF15469		182	Sec5: Exocyst complex component Sec5	97.46
PF05664		677	DUF810: Protein of unknown function (DUF810); Inte	97.42
PF08700		87	Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT te	97.37
KOG2347\|consensus		934		97.32
KOG2180\|consensus		793		96.66
PF06148		133	COG2: COG (conserved oligomeric Golgi) complex com	96.61
PF04048		142	Sec8_exocyst: Sec8 exocyst complex component speci	96.61
PF10474		234	DUF2451: Protein of unknown function C-terminus (D	96.49
KOG3745\|consensus		763		95.86
KOG2211\|consensus		797		95.52
KOG1011\|consensus		1283		94.05
KOG3691\|consensus		982		93.75
KOG2115\|consensus		951		93.31
KOG2069\|consensus		581		90.78
PF15290		305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	88.55
PF08318		331	COG4: COG4 transport protein; InterPro: IPR013167	82.29
KOG2033\|consensus		863		80.96
smart00762		324	Cog4 COG4 transport protein. This region is found	80.5

>KOG2180\|consensus	Back alignment and domain information

Probab=100.00  E-value=1.4e-163  Score=1351.84  Aligned_cols=727  Identities=44%  Similarity=0.747  Sum_probs=692.6

Q ss_pred             CchhHHHHHhhhCCCCCCCCCCCCchhhhhhcccCcccccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhh
Q psy17363         14 YPKSVQDALKEIMPSTDVLDDHDFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALE   93 (790)
Q Consensus        14 ~~~~v~~~~~~~~~~~d~lds~dfd~~~~In~lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~   93 (790)
                      ++++|...|.+++|.      |+|+.++|||++||+++||++||+++++++.+++++|++|+.+|+.|.|++++|+.++.
T Consensus         2 ~~~~v~~~I~q~~~t------~~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~   75 (793)
T KOG2180|consen    2 LKGNVLYDINQMIPT------PEFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLA   75 (793)
T ss_pred             CCchHHHHHHHhcCC------cchhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHH
Confidence            678999999999998      89999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhhhccccccch
Q psy17363         94 DSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPL  173 (790)
Q Consensus        94 ~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll  173 (790)
                      +++.+|.+|+++|.+|+++|++||.||++||+|||+||.||||||+|||+|+|||||++||++|++|+++|+|++++++|
T Consensus        76 da~~ai~eL~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~l  155 (793)
T KOG2180|consen   76 DAQAAIEELFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPL  155 (793)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhhccCCCChhHHHHHHHHHHHHHhHhHHHHHHHHHhhhcCCCCC-CCcChhHHHHHHhhhhccChhhhhhHHH
Q psy17363        174 QGVIEVMKHFQDSTDIPQILELRSQVAQIQNTLSEQITQDLKNAFQNPSSG-SFVPSKQIAEALRVVSILDPKVKKNILE  252 (790)
Q Consensus       174 ~~~~~L~~~F~~y~~i~~i~~L~~~v~~l~~~l~~qI~~df~~~~~~~~~~-~~~~~~~l~daC~vvd~l~~~~k~~li~  252 (790)
                      +++.+|++||++||++|+|+.|+..+++++..+..||+.||+++|.+++.. .+...+.|.|||+|+|+|+|++|+++|+
T Consensus       156 qai~~ll~~F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~v~d~lepsvreelIk  235 (793)
T KOG2180|consen  156 QAILQLLNHFIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACLVVDALEPSVREELIK  235 (793)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHhCCccHHHHHH
Confidence            999999999999999999999999999999999999999999999988773 2334578999999999999999999999


Q ss_pred             HHHHhhccceeeeeccCcchhhHhhhhhHHHHHHhhhccccccccccCCCcccccchhhHHHHHhhhhhhhhhhhccccc
Q psy17363        253 WFISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSELGKIMSKRKFE  332 (790)
Q Consensus       253 ~~~~~~L~ey~~~F~~~~ea~~Ld~i~rRy~Wf~r~L~~~e~~~~~iFP~~W~v~~~l~~~Fc~~Tr~~L~~iL~~~~~~  332 (790)
                      |||.++|.+|..+|++++|+||||||+|||+||+|.|++|+++|+++||++|+|+.|||.+||+.||++|..||.++..+
T Consensus       236 wf~~qqL~ey~~IF~en~E~a~LDkidrRY~wfKr~L~~fe~k~~~iFP~dW~v~~RLt~eFc~~Tr~~L~~Il~~~~~~  315 (793)
T KOG2180|consen  236 WFCSQQLEEYEQIFRENEEAASLDKLDRRYAWFKRLLRDFEEKWKPIFPADWHVAYRLTIEFCHQTRKQLESILKRRKKE  315 (793)
T ss_pred             HHHHHHHHHHHHHHhccHhhhhhhhHHHHHHHHHHHHHHHHHhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998889


Q ss_pred             hhHHHHHHHHhccccHHHHHHhhccCccccc----------cccccccchhhhhccchhhhhhhhhccchHHHHHHHhhh
Q psy17363        333 IDVKLLLYAIQKTSNFEQLLEKRFADDETEG----------ENKTKFDGIIGSCFQNYLYIYIESLDRNLSDLIDRFAED  402 (790)
Q Consensus       333 idv~lLl~alq~T~~FE~~l~krf~~~~~~~----------~~~~~f~g~iS~~FepyL~~yv~~qdk~l~~~l~~~~~~  402 (790)
                      +|+++||.|||+|++||++|++||+|.+..+          ....+|+|+||+||||||.+||++|++.|+++|++|+++
T Consensus       316 ~~v~lll~Alq~TleFE~~L~kRF~g~~~~~~~~~ns~~~~k~~~~f~~~isScFEPhLtlyI~~qek~l~ellek~v~e  395 (793)
T KOG2180|consen  316 PDVKLLLFALQSTLEFEKFLDKRFSGGTLTGKPEKNSQFEPKERFNFEGAISSCFEPHLTLYIESQEKELSELLEKFVSE  395 (793)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccccccchhhHHHHhcccchhhhhhHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999998643321          122479999999999999999999999999999999999


Q ss_pred             HHHHHhchhhhhccCCCCCCcchhhHHHHhhhccccccccccC-CchHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccc
Q psy17363        403 SKQVLNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQLSTG-EPMVALATTFQQYLRHYAHKVLQQNVSKQAGQTANT  481 (790)
Q Consensus       403 ~~~~~~~~~~~d~~~~~~vl~Ss~dLF~~yk~~l~~~~~ls~g-~~L~~L~~~f~k~L~~Ya~~iL~~~lp~~~~~~~~~  481 (790)
                      ++++++|..+.|  .++.|+|||+|||++||+|++||.+|+++ +||+++..+|+|||++|+++||.+.||...+     
T Consensus       396 ~~~~~~p~~~~~--~~s~vlpSsadlF~~Ykkcltq~~~Ls~n~dpl~~~~~~f~k~LreYa~kil~~~lP~~t~-----  468 (793)
T KOG2180|consen  396 EKWDGEPKSNTD--EESLVLPSSADLFVAYKKCLTQCSELSENNDPLIALLAVFSKWLREYAQKILLGNLPDTTS-----  468 (793)
T ss_pred             hccCCCCCCCcc--cccccCccHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhccCCcccc-----
Confidence            998876666666  78999999999999999999999999999 9999999999999999999999999998765     


Q ss_pred             chhccccccccccccc-cc--cccCCcccccceeEeecchhHHHHhHHHHHHHHhhhcCCcccccccCCccchhHHHHHH
Q psy17363        482 TLASVSNITRDLGLIK-DQ--RTKYTPQEQAKICCVLTTAEYCLETTQQLEQKLKEKVDPNLANKIDLSNEQDVFHNVIS  558 (790)
Q Consensus       482 ~~s~~~~~~~~~~~~k-e~--~~~~~~~~~~~ic~ilnTAdYc~~t~~qLe~kl~e~i~~~~~~~i~~~~~~d~f~~vis  558 (790)
                         +.+|+++ ..+.+ |+  ..+++.+++..+|++++||+||.+|+.|||++++|+++..|.++|+|+.+++.|+.+++
T Consensus       469 ---~s~g~~v-~~l~~~e~~~~~~~t~d~l~di~~~lst~e~~~~tt~qle~kl~e~~~~~~~~~vs~s~~r~~~~~~~~  544 (793)
T KOG2180|consen  469 ---SSDGAAV-YLLLRIEGAEYCRFTIDQLLDICCILSTAEYCLATTIQLEKKLKEIVDASYIKGVSFSEEREVFSSKIS  544 (793)
T ss_pred             ---cccCchh-hhHHHhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHh
Confidence               3445544 34444 22  45788899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcchhhhhHHhhccccccccccCccccchhhhhhhhccccceecccccchhHHHHHHHhhhhchhHHHH
Q psy17363        559 SCIQLLVQDLELACEPALTAMVKTNWSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFANSFIPKLV  638 (790)
Q Consensus       559 ~~i~~Lv~~le~~~~~al~~m~k~~W~~~e~vgd~S~Yv~~i~~~l~~~~~~i~~~L~~~~~yf~~fc~k~~~~~i~~f~  638 (790)
                      .|++.+|++++++|+|+++.|.++.|.+++.|||||+||+++..|+++.+|.+++++...++||++||.+++.+|+++|+
T Consensus       545 ~s~q~lv~D~e~a~~~~lt~msk~~~~~l~~vgDQss~v~s~~~h~~q~~~~i~~~~~~~r~~f~~fc~r~a~~f~~kf~  624 (793)
T KOG2180|consen  545 VSLQFLVQDLENALDPDLTPMSKMQWQNLEGVGDQSSYVSSLNFHLSQFVPLIRDALALDRKYFAQFCVRLAASFIPKFL  624 (793)
T ss_pred             hhHHHHHHHHHHhhCcccChHHHHHHHHhcCccccchhhHHHHHHHHhhhHHHHHHhccccchHHHhhHHHHhhcchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccccccchhHHHHHHHHHHHHhccCCCchhhhhhcCCccceeeeeccchhHHHHHHHHHhhcCCCchhHHHhhh
Q psy17363        639 QHVFKCKPLSTVGAEQLLLDIHMLKTVLLDLPSIGSQVVRKAPASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCK  718 (790)
Q Consensus       639 ~~l~k~k~is~~gaeQLllD~~~Lk~~ll~lp~~~~~~~~~~p~sy~k~V~~~~~k~E~iLKll~~p~~~~~~fv~~y~~  718 (790)
                      +.++||+|++.+|||||++|+|++|++|+.+|++++..+.++|  |+++|++.|+++|||||+||+|.+|+++|+++|..
T Consensus       625 ~~l~R~k~~s~~g~EQLlldt~slK~~ll~lp~~~s~~n~~~~--y~~~~~~~m~~~e~iiK~lm~p~~~~~~f~e~yik  702 (793)
T KOG2180|consen  625 NVLFRAKPISVVGAEQLLLDTESLKDALLTLPPLRSLFNDKRP--YKRHVDNNMTQAEMIIKVLMTPLDPADDFYEQYIK  702 (793)
T ss_pred             HHHHHhhhHhhhHHHHHHHHHHHHHHHhhcCCchhhhccccch--HHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            9999999999999999999999999999999999999988888  99999999999999999999999999999999999


Q ss_pred             hCCCCchhHHHHHhhccCCccccccccccccCCCCCCCCcc
Q psy17363        719 LLPESDMTEFQRILDMKGLKTNEKNNLINLFRPKNPSNTSS  759 (790)
Q Consensus       719 l~~d~s~~~f~kIL~lKg~~r~eq~~lle~f~~~~~~~~~~  759 (790)
                      |+||.+.++|||||+|||++|.++...+..|+-.+++.++.
T Consensus       703 L~~~~~~a~~~~vLelKgv~r~d~~~~l~~~~~~~~~~~~e  743 (793)
T KOG2180|consen  703 LLPDPDSAEWQKVLELKGVKRDDALWKLLWFAYNLEADDSE  743 (793)
T ss_pred             hcCCCcHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccCCCc
Confidence            99999999999999999999999999999999998877733

>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events []	Back alignment and domain information

>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex	Back alignment and domain information

>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2286\|consensus	Back alignment and domain information

>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases	Back alignment and domain information

>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []	Back alignment and domain information

>KOG2346\|consensus	Back alignment and domain information

>KOG0412\|consensus	Back alignment and domain information

>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins []	Back alignment and domain information

>KOG2218\|consensus	Back alignment and domain information

>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane	Back alignment and domain information

>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known	Back alignment and domain information

>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells	Back alignment and domain information

>KOG2176\|consensus	Back alignment and domain information

>KOG2307\|consensus	Back alignment and domain information

>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking	Back alignment and domain information

>KOG4182\|consensus	Back alignment and domain information

>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 []	Back alignment and domain information

>PF15469 Sec5: Exocyst complex component Sec5	Back alignment and domain information

>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi	Back alignment and domain information

>KOG2347\|consensus	Back alignment and domain information

>KOG2180\|consensus	Back alignment and domain information

>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex	Back alignment and domain information

>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane	Back alignment and domain information

>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known	Back alignment and domain information

>KOG3745\|consensus	Back alignment and domain information

>KOG2211\|consensus	Back alignment and domain information

>KOG1011\|consensus	Back alignment and domain information

>KOG3691\|consensus	Back alignment and domain information

>KOG2115\|consensus	Back alignment and domain information

>KOG2069\|consensus	Back alignment and domain information

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp	Back alignment and domain information

>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport []	Back alignment and domain information

>KOG2033\|consensus	Back alignment and domain information

>smart00762 Cog4 COG4 transport protein	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		790
3ns4_A		271	Vacuolar protein sorting-associated protein 53; GA	5e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
3fhn_A		706	Protein transport protein TIP20; TIP20P, vesicle t	6e-09

>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae} Length = 271	Back alignment and structure

 Score = 84.1 bits (207), Expect = 5e-18
 Identities = 30/192 (15%), Positives = 60/192 (31%), Gaps = 24/192 (12%)

Query: 620 KYFTQFCVKFANSFIPKLVQHVFK-CKPLSTVG----------------AEQLLLDIHML 662
            Y   F  K  +      V +  +  +P+                     EQLLLD+ +L
Sbjct: 22  VYKWNFLDKVIDIMTTNFVSNTIRLLQPVPPFSLAGSKRKFETRTVVNIGEQLLLDLELL 81

Query: 663 KTVLLDLPSIGSQVVRKAP----ASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCK 718
           K +   LP   S               +     + +    +KL+MA  +    + E + K
Sbjct: 82  KEIFHTLPESVSNDSDLRENTSYKRVKRHADNNIDQLLKFIKLLMAPLDSADDYYETYSK 141

Query: 719 LLPE-SDMTEFQRILDMKGLKT--NEKNNLINLFRPKNPSNTSSSLVAATNSTSSSRQDT 775
           L     D   +  +L +KG+         + + +  +       S   +       + D 
Sbjct: 142 LTNNNPDSAVWSFVLALKGIPWDLALWKKMWSAYNLETDDTDEGSRPDSNRDLFIFKWDK 201

Query: 776 SSIQKLNNLIKK 787
             + +  N + +
Sbjct: 202 VLLGQFENNLAR 213

PyMOL of 3ns4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae} Length = 706	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		790
3ns4_A		271	Vacuolar protein sorting-associated protein 53; GA	99.97
2fji_1		399	Exocyst complex component SEC6; exocytosis, tandem	99.93
3fhn_A		706	Protein transport protein TIP20; TIP20P, vesicle t	99.76
3swh_A		341	MUNC13-1, protein UNC-13 homolog A; alpha helical,	98.08
2a2f_X		325	Exocyst complex component SEC15; all helical struc	97.65
3hr0_A		263	COG4; conserved oligomeric golgi complex, intracel	97.43
3n1e_A		141	Vacuolar protein sorting-associated protein 54; sp	87.53

>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=99.97  E-value=8.4e-34  Score=288.23  Aligned_cols=140  Identities=20%  Similarity=0.283  Sum_probs=128.1

Q ss_pred             chhHHHHHHHhhhhchhHHHHhhh-hccccc---------------ccc-chhHHHHHHHHHHHHhccCCCchh-hhhhc
Q psy17363        618 SRKYFTQFCVKFANSFIPKLVQHV-FKCKPL---------------STV-GAEQLLLDIHMLKTVLLDLPSIGS-QVVRK  679 (790)
Q Consensus       618 ~~~yf~~fc~k~~~~~i~~f~~~l-~k~k~i---------------s~~-gaeQLllD~~~Lk~~ll~lp~~~~-~~~~~  679 (790)
                      +..||++||||++++|+++|+++| ++|||+               +++ ||||||||+|+||++|++||+.++ +++++
T Consensus        20 R~~Y~rnFcDK~ve~~~~~Fi~~Ii~~ckPi~pf~~~~~~rk~~~~s~v~gaEQLLLD~~sLK~~Ll~LP~~~~~~~~~~   99 (271)
T 3ns4_A           20 RDVYKWNFLDKVIDIMTTNFVSNTIRLLQPVPPFSLAGSKRKFETRTVVNIGEQLLLDLELLKEIFHTLPESVSNDSDLR   99 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCSSSSCSCSSCHHHHHHHHHHHHHHHHHHHHHHHHGGGGGCSCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHheeCcccccccccccccccccchhHHHHHHHHHHHHHHHHHcccccccccccC
Confidence            479999999999999999999999 789999               888 999999999999999999999876 33566


Q ss_pred             CC---ccceeeeeccchhHHHHHHHHHhhcCCCchhHHHhhhhCCC-CchhHHHHHhhccCCc--cccccccccccCCCC
Q psy17363        680 AP---ASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCKLLPE-SDMTEFQRILDMKGLK--TNEKNNLINLFRPKN  753 (790)
Q Consensus       680 ~p---~sy~k~V~~~~~k~E~iLKll~~p~~~~~~fv~~y~~l~~d-~s~~~f~kIL~lKg~~--r~eq~~lle~f~~~~  753 (790)
                      +|   ++|+|+|+++|+++|++||+||+|.+||++||++|..|+|| .+..+|+|||+|||++  +++|++|++.|+.+.
T Consensus       100 ~~ts~~sytK~V~~~~~kle~lLKvLm~P~dppe~~ve~Y~~Li~dn~s~~nF~KIL~LKGv~wdl~~wk~~~~~f~l~~  179 (271)
T 3ns4_A          100 ENTSYKRVKRHADNNIDQLLKFIKLLMAPLDSADDYYETYSKLTNNNPDSAVWSFVLALKGIPWDLALWKKMWSAYNLET  179 (271)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHTTSCCCHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHC
T ss_pred             CCcccchhhhHHhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCccHHHHHHHHHHHhhcc
Confidence            77   57999999999999999999999999999999999999999 9999999999999995  889999999999876


Q ss_pred             CCCC
Q psy17363        754 PSNT  757 (790)
Q Consensus       754 ~~~~  757 (790)
                      ....
T Consensus       180 ~~~~  183 (271)
T 3ns4_A          180 DDTD  183 (271)
T ss_dssp             ----
T ss_pred             cccc
Confidence            5544

PyMOL of 3ns4

>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}	Back alignment and structure

>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=99.76  E-value=2.1e-17  Score=192.13  Aligned_cols=610  Identities=14%  Similarity=0.159  Sum_probs=383.0

Q ss_pred             cccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhh
Q psy17363         51 QSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLL  130 (790)
Q Consensus        51 ~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~L  130 (790)
                      ++|-+||+.|+.+++++..|-.+|+.+-..+..-+.+ ...++.+-       ++|-.--..-+..++...+ ..|.+=|
T Consensus        10 ~dl~~i~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~i~~~~~s~~~~~~l~~~-yg~l~il   80 (706)
T 3fhn_A           10 DDLLNINDRIKQVQNERNELASKLQNLKQSLASNDTE-VALSEVIA-------QDIIEVGASVEGLEQLRAK-YGDLQIL   80 (706)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCCCHHHH-------HHHHHSCSSHHHHHHHHHT-TCCCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccchH-HHHHHHHH-------HHHHhccccHHHHHHHHHH-cCCcHHH
Confidence            5667789999999999999999998875533111111 11122122       2221111111233333333 3666666


Q ss_pred             hhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhh----hccccccchhhHHHHHhhccCCCChh----HHH----HHHHH
Q psy17363        131 DTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQR----QYGEIVMPLQGVIEVMKHFQDSTDIP----QIL----ELRSQ  198 (790)
Q Consensus       131 D~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r----~Y~e~~~ll~~~~~L~~~F~~y~~i~----~i~----~L~~~  198 (790)
                      +..+.++..-.+.-+.++-|-.-=++|..++...    .+.+...+...+..+.....+-.+++    +.+    .+..+
T Consensus        81 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (706)
T 3fhn_A           81 NKLEKVAVQQTQMQAGVDKLDSFERQLDELAEQPPDQFTLDDVKALHSKLTSVFATVPQINNIDSQYAAYNKLKSKVTGK  160 (706)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHTTSCCCCCTTSTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcccccchhhhhhhhhcchHHHHHH
Confidence            6666666665555555554433333344443322    23333333333333321111212122    122    24445


Q ss_pred             HHH-HHhHhHHHHHHHHHhhhcCCCCCCCc--C-----hhHHHHHHh----hhhccChhhhh----------------h-
Q psy17363        199 VAQ-IQNTLSEQITQDLKNAFQNPSSGSFV--P-----SKQIAEALR----VVSILDPKVKK----------------N-  249 (790)
Q Consensus       199 v~~-l~~~l~~qI~~df~~~~~~~~~~~~~--~-----~~~l~daC~----vvd~l~~~~k~----------------~-  249 (790)
                      +.. +.+.++..+..+|+..+...+|+.+.  +     ...++.++.    +.|...|+...                . 
T Consensus       161 ~~~~l~~~~~~~ls~~l~~~L~~~kWp~~~~~~~~~~~~~~~~~~~~~l~kL~~Lq~p~~~~~~~~~~~~~~~~~~~~~~  240 (706)
T 3fhn_A          161 YNDVIIQRLATNWSNTFDQKLLEAQWDTQKFASTSVGLVKCLRENSTKLYQLSLLYLPLEEETQNGDSERPLSRSNNNQE  240 (706)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHTTTTSTTCCGGGSHHHHHHHHHHHHHHHHHTTCCCCCCC------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCcccCCcchhHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCCC
Confidence            544 56788899999999999888887532  1     134777776    67777765321                1 


Q ss_pred             ----HHHHHHHhhccceeeeeccCcchhhHhhhhhHHHHHHhhhcccccc----ccccCCCccccc--chhhHHHHHhhh
Q psy17363        250 ----ILEWFISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKKQLLHVEDK----FGTLFPPHWQLS--EKITLEFCERTR  319 (790)
Q Consensus       250 ----li~~~~~~~L~ey~~~F~~~~ea~~Ld~i~rRy~Wf~r~L~~~e~~----~~~iFP~~W~v~--~~l~~~Fc~~Tr  319 (790)
                          -++.+++.+...++.+|.++.++   ++++-.|.|+.+.|...=..    |...|+..=.+.  ..++..--...|
T Consensus       241 p~llp~~~L~~P~~~RFrYHF~g~k~T---dKpEwyf~Fl~~~lq~~L~~~~~~f~d~~~~~~~~~~~~eFI~~LL~~vr  317 (706)
T 3fhn_A          241 PVLWNFKSLANNFNVRFTYHFHATSSS---SKIETYFQFLNDYLAENLYKCINIFHDDCNGLTKPVIHEQFINYVLQPIR  317 (706)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTCSCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCBGGGTBCHHHHHHHHHHHHSHHHH
T ss_pred             ccchhHHHHHHHHHHHhhhhcCCCCCC---CCcHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHH
Confidence                28889999999999999988765   78887788888777766555    333333211111  122222236667


Q ss_pred             hhhhhhhhccccchhHHHHHHHHhccccHHHHHHhhccCccccccccccccchhhhhccchhhhhhhhhccchHHHHHHH
Q psy17363        320 SELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLLEKRFADDETEGENKTKFDGIIGSCFQNYLYIYIESLDRNLSDLIDRF  399 (790)
Q Consensus       320 ~~L~~iL~~~~~~idv~lLl~alq~T~~FE~~l~krf~~~~~~~~~~~~f~g~iS~~FepyL~~yv~~qdk~l~~~l~~~  399 (790)
                      +.+...|..    -|+.+|.+.+..++.|++.|...|++.+         .|.++-+=+.|+..|++.|.+.-.+.++..
T Consensus       318 eKl~~~l~~----~d~~lLsHlI~Ell~FD~~Lr~~~~Y~~---------~Gl~~li~~~~f~~WL~~Ek~fA~~rf~~I  384 (706)
T 3fhn_A          318 DKVRSTLFQ----NDLKTLIVLISQILATDKNLLNSFHYHG---------LGLVSLISDEVWEKWINYEVEMANRQFINI  384 (706)
T ss_dssp             HHHHHHHHT----SCHHHHHHHHHHHHHHHHHHHHHTCCCS---------CCGGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhHhcc----cchHHHHHHHHHHHHHHHHHHHhcCCCC---------CcchhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777764    2788999999999999999999997521         577776668899999999999944444444


Q ss_pred             hhhHHHHHhchhhhhccCCCCCCcch---hhHHHHhhh--------ccccccccccCCchHHHHHHHHHHHHHHHHHHHh
Q psy17363        400 AEDSKQVLNNINETCETSAAPVLPSC---ADLFMFYKK--------SLVQCTQLSTGEPMVALATTFQQYLRHYAHKVLQ  468 (790)
Q Consensus       400 ~~~~~~~~~~~~~~d~~~~~~vl~Ss---~dLF~~yk~--------~l~~~~~ls~g~~L~~L~~~f~k~L~~Ya~~iL~  468 (790)
                      ++.        ++       ...+|+   .+|+..++.        .+....+++..  +  ...++...+..|..++..
T Consensus       385 i~s--------~d-------~lt~sA~~~~~LLe~It~~l~~~~~~rY~~L~~~~~K--l--~f~IqiqL~d~Y~~~L~~  445 (706)
T 3fhn_A          385 TKN--------PE-------DFPKSSQNFVKLINKIYDYLEPFYDLDFDLLVRYKLM--T--CSLIFMNLTSSYLDYILT  445 (706)
T ss_dssp             TSS--------GG-------GGGGHHHHHHHHHHHHHHHHSHHHHCCCGGGGHHHHH--H--HHHHHHHHHHHHHHHHHT
T ss_pred             HhC--------Cc-------cCCHHHHHHHHHHHHHHHhccccchhhcccccchHHH--H--HHHHHHhhHHHHHHHHhC
Confidence            321        11       112344   456666655        33333333332  2  347778888889887643


Q ss_pred             hhhhhhhccccccchhccccccccccccccccccCCcccccceeEeecch-hHHHHhH-HHHHHHHhhhcCCcccccccC
Q psy17363        469 QNVSKQAGQTANTTLASVSNITRDLGLIKDQRTKYTPQEQAKICCVLTTA-EYCLETT-QQLEQKLKEKVDPNLANKIDL  546 (790)
Q Consensus       469 ~~lp~~~~~~~~~~~s~~~~~~~~~~~~ke~~~~~~~~~~~~ic~ilnTA-dYc~~t~-~qLe~kl~e~i~~~~~~~i~~  546 (790)
                         |.           ++|+..     .+|+..--+...+..+|.|.|+- ||+.+.. -+|-+.+.+..+..+  .--|
T Consensus       446 ---~s-----------~lgr~~-----tke~~~~~g~~~L~~L~~V~~~L~dWsddvfFLeLw~~l~~~t~s~~--gSIF  504 (706)
T 3fhn_A          446 ---VD-----------SLNETR-----TKEQELYQTMAKLQHVNFVYRKIKSLSSNFIFIQLTDIVNSTESKKY--NSLF  504 (706)
T ss_dssp             ---CC-----------CSCSEE-----EHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTCCC--SCTT
T ss_pred             ---cc-----------cccccc-----chHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhcccCccc--CccH
Confidence               11           222210     11110000011334455555432 2221111 156666665544433  4489


Q ss_pred             CccchhHHHHHHH-HHHHHHHhhhhcchhhhhHHhh-ccccccccccC--------ccccchhhhhhhhccccceecc-c
Q psy17363        547 SNEQDVFHNVISS-CIQLLVQDLELACEPALTAMVK-TNWSSVESVGD--------QSGYVTAITSHLKQSVPLIRTN-L  615 (790)
Q Consensus       547 ~~~~d~f~~vis~-~i~~Lv~~le~~~~~al~~m~k-~~W~~~e~vgd--------~S~Yv~~i~~~l~~~~~~i~~~-L  615 (790)
                      +++...|..+..+ ....+|..+...++.+++++.+ ..|.++....+        .|+.+..+...|+..+..+... |
T Consensus       505 DetIs~Y~~L~~~~~~~~Iv~~v~~eik~~lK~Y~k~s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~~L~~~lL  584 (706)
T 3fhn_A          505 QNVENDYEKAMSTDMQNSIVHRIQKLLKETLRNYFKISTWSTLEMSVDENIGPSSVPSAELVNSINVLRRLINKLDSMDI  584 (706)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHHCCGGGTCCCC------CCCCCCGGGHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcccCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence            9999999999999 9999999999999999999999 68997653322        2677788888999999888887 5


Q ss_pred             ccchhHHHHHHHhhhhchhHHHHhhhhccccccccchhHHHHHHHHHHHHhccCCCchhhhhhcCCccceeeeeccchhH
Q psy17363        616 SSSRKYFTQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQLLLDIHMLKTVLLDLPSIGSQVVRKAPASFTKVVVKGMTKA  695 (790)
Q Consensus       616 ~~~~~yf~~fc~k~~~~~i~~f~~~l~k~k~is~~gaeQLllD~~~Lk~~ll~lp~~~~~~~~~~p~sy~k~V~~~~~k~  695 (790)
                      +  ...|+++...+++.+..-+++.|+...+|++.||.|+..|+..|+.+|. +|.           ++   ....|.++
T Consensus       585 ~--~~~f~~IwR~ia~~Ld~yL~e~IL~~nkFS~~Ga~Qf~~D~~~L~~v~~-lp~-----------~~---~~~~~~~L  647 (706)
T 3fhn_A          585 P--LAISLKVKNELLNVIVNYFTESILKLNKFNQNGLNQFLHDFKSLSSILS-LPS-----------HA---TNYKCMSL  647 (706)
T ss_dssp             C--HHHHHHHHHHHHHHHHHHHHHTTTTTSCBCHHHHHHHHHHHHHHHTTSC-CCT-----------TC---CCHHHHHH
T ss_pred             C--HHHHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHhc-CCC-----------cc---hhhHHHHH
Confidence            7  7899999999999999999999999999999999999999999998887 763           11   35689999


Q ss_pred             HHHHHHHHhhcCCC-chhHHHhhhhCCCCchhHHHHHhhccCCccccccc
Q psy17363        696 EMILKLVMASAEPD-ICFVEQFCKLLPESDMTEFQRILDMKGLKTNEKNN  744 (790)
Q Consensus       696 E~iLKll~~p~~~~-~~fv~~y~~l~~d~s~~~f~kIL~lKg~~r~eq~~  744 (790)
                      ...+++|..|.++. ..|...  ..++.+...++...+.+|-++-+|.+.
T Consensus       648 ~E~l~LL~L~~d~~~~~f~~~--~y~~~~~~~~l~~~~~i~~l~~~~i~d  695 (706)
T 3fhn_A          648 HELVKILKLKYDPNNQQFLNP--EYIKTGNFTSLKEAYSIKYLKDTKIQD  695 (706)
T ss_dssp             HHHHHHHGGGGCGGGTTTTSH--HHHHHCCCSHHHHHHTCSSSCHHHHHH
T ss_pred             HHHHHHcCCCCCcchhhHHHH--HHHccCChHHHHHhcCcccCCHHHHHH
Confidence            99999999998664 223311  223556667788888888777666543

PyMOL of 3fhn

>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}	Back alignment and structure

>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}	Back alignment and structure

>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}	Back alignment and structure

>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		790
d2d2sa1		229	Exocyst complex component EXO84 {Baker's yeast (Sa	83.5

>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Exocyst complex component
domain: Exocyst complex component EXO84
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.50  E-value=2.9  Score=39.80  Aligned_cols=72  Identities=13%  Similarity=0.271  Sum_probs=56.1

Q ss_pred             hhhhhHHHHhhhhhHHHHHhhhccccccchhhHHHHHhhccCC---CChhHHHHHHHHHHHHHhHhHHHHHHHHH
Q psy17363        144 LNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDS---TDIPQILELRSQVAQIQNTLSEQITQDLK  215 (790)
Q Consensus       144 LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~L~~~F~~y---~~i~~i~~L~~~v~~l~~~l~~qI~~df~  215 (790)
                      =+||+-+.+.+|.|..++..++|.+|..++....+.+..+...   .++.-+..+...++..+..|.+++..++.
T Consensus         6 ~~~~~wl~d~~d~LDv~Ia~~~feeAl~ll~~~e~~l~~~~~~~~~~~~~~~~~i~~kv~~r~~~L~~~L~~~l~   80 (229)
T d2d2sa1           6 AQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL   80 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhHhcccHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3788889999999999999999999999999999888665543   22345556777888888888888877664

PyMOL of d2d2sa1